## Fri Oct 18 17:45:32 2024
## emapper-2.1.12
## /data/home/zkh/miniconda3/envs/eggnog-mapper/bin/emapper.py -i /data/home/zkh/binning/Potential_rubisco_autotrophic/SX3_bin.15.fa -m mmseqs --itype genome -o SX3_bin.15 --output_dir /data/home/zkh/meta_analysis/eggnog-mapper/all_bins_1385/SX3_bin.15 --cpu 28
##
#query	seed_ortholog	evalue	score	eggNOG_OGs	max_annot_lvl	COG_category	Description	Preferred_name	GOs	EC	KEGG_ko	KEGG_Pathway	KEGG_Module	KEGG_Reaction	KEGG_rclass	BRITE	KEGG_TC	CAZy	BiGG_Reaction	PFAMs
SX3_k127_1005630_5	1230476.C207_01281	1.367e-110	379.0	COG0683@1|root,COG0683@2|Bacteria,1MV5T@1224|Proteobacteria,2V9EY@28211|Alphaproteobacteria,3JR88@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	MA20_42580	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1005630_1	1297865.APJD01000044_gene6899	3.023e-224	696.0	COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2TT26@28211|Alphaproteobacteria,3JSMK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_42575	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1005630_2	1230476.C207_01283	5.375e-189	593.0	COG0559@1|root,COG0559@2|Bacteria,1N54M@1224|Proteobacteria,2TTF5@28211|Alphaproteobacteria,3JS6W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_42570	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1005630_6	1230476.C207_01284	3.609e-70	240.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,3K0HZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
SX3_k127_1005630_0	1297865.APJD01000044_gene6901	0.0	1303.0	COG1022@1|root,COG1022@2|Bacteria,1MU4D@1224|Proteobacteria,2TSSI@28211|Alphaproteobacteria,3JTHV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	AMP-binding enzyme	MA20_42565	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding
SX3_k127_1005630_3	1297865.APJD01000044_gene6902	3.865e-174	548.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TQK1@28211|Alphaproteobacteria,3JT7I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	MA20_42560	-	-	ko:K01995,ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_1005630_4	1297865.APJD01000044_gene6903	7.302e-141	448.0	COG0664@1|root,COG0664@2|Bacteria,1MUHT@1224|Proteobacteria,2U1RI@28211|Alphaproteobacteria,3JRZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cyclic nucleotide-monophosphate binding domain	MA20_42555	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2,cNMP_binding
SX3_k127_1005630_7	172088.AUGA01000101_gene4396	1.335e-25	107.0	COG1089@1|root,COG1089@2|Bacteria,1MUX0@1224|Proteobacteria,2TR8G@28211|Alphaproteobacteria,3JSHE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose	gmd	-	4.2.1.47	ko:K01711	ko00051,ko00520,ko01100,map00051,map00520,map01100	-	R00888	RC00402	ko00000,ko00001,ko01000	-	-	-	GDP_Man_Dehyd
SX3_k127_100905_9	1230476.C207_04137	3.496e-180	567.0	COG1073@1|root,COG1073@2|Bacteria,1QWJW@1224|Proteobacteria,2TT45@28211|Alphaproteobacteria,3JSX1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	alpha/beta hydrolase fold	MA20_36090	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Chlorophyllase2,Hydrolase_4
SX3_k127_100905_14	1297865.APJD01000010_gene4898	1.704e-164	529.0	COG1396@1|root,COG1396@2|Bacteria,1MUG2@1224|Proteobacteria,2TR3R@28211|Alphaproteobacteria,3JW2Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_31
SX3_k127_100905_5	1297865.APJD01000010_gene4897	1.717e-239	740.0	COG0604@1|root,COG0604@2|Bacteria,1QWJV@1224|Proteobacteria,2TX01@28211|Alphaproteobacteria,3JRM5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Alcohol dehydrogenase GroES-like domain	-	-	1.1.1.1	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_100905_1	1297865.APJD01000010_gene4896	0.0	1307.0	COG0793@1|root,COG1680@1|root,COG0793@2|Bacteria,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2U0IV@28211|Alphaproteobacteria,3JVVE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase,PDZ_2
SX3_k127_100905_6	1297865.APJD01000010_gene4895	1.327e-237	737.0	COG2207@1|root,COG2207@2|Bacteria,1P4M5@1224|Proteobacteria,2TSQV@28211|Alphaproteobacteria,3JXM4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
SX3_k127_100905_7	1297865.APJD01000010_gene4894	1.77e-204	637.0	COG1192@1|root,COG1192@2|Bacteria,1MVKR@1224|Proteobacteria,2TRZY@28211|Alphaproteobacteria,3JUQ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	ATPase MipZ	mipZ	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	MipZ
SX3_k127_100905_12	1297865.APJD01000010_gene4893	1.001e-174	552.0	COG0414@1|root,COG0414@2|Bacteria,1MV1S@1224|Proteobacteria,2TS2D@28211|Alphaproteobacteria,3JVAJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate	panC	GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605	6.3.2.1	ko:K01918	ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110	M00119	R02473	RC00096,RC00141	ko00000,ko00001,ko00002,ko01000	-	-	-	Pantoate_ligase
SX3_k127_100905_16	1297865.APJD01000010_gene4892	2.127e-161	509.0	COG3904@1|root,COG3904@2|Bacteria,1MY3P@1224|Proteobacteria,2U2AS@28211|Alphaproteobacteria,3JRMD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	periplasmic protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_100905_20	1297865.APJD01000010_gene4891	1.772e-88	297.0	COG5458@1|root,COG5458@2|Bacteria,1N054@1224|Proteobacteria,2UBY1@28211|Alphaproteobacteria,3JSUQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1489)	MA20_36070	-	-	-	-	-	-	-	-	-	-	-	DUF1489
SX3_k127_100905_10	1297865.APJD01000010_gene4890	4.231e-178	560.0	2FGXG@1|root,348SR@2|Bacteria,1MXYU@1224|Proteobacteria,2TTD5@28211|Alphaproteobacteria,3JTBT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_100905_22	1297865.APJD01000010_gene4889	1.366e-35	136.0	2DS8Z@1|root,33F1X@2|Bacteria,1N095@1224|Proteobacteria,2UCJ3@28211|Alphaproteobacteria,3K03Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_36060	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_100905_21	1297865.APJD01000010_gene4888	4.535e-70	237.0	COG3753@1|root,COG3753@2|Bacteria,1N7FF@1224|Proteobacteria,2UARR@28211|Alphaproteobacteria,3JYS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF937)	-	-	-	-	-	-	-	-	-	-	-	-	DUF937
SX3_k127_100905_19	1297865.APJD01000010_gene4887	1.57e-142	454.0	COG0625@1|root,COG0625@2|Bacteria,1PHM1@1224|Proteobacteria,2TTQZ@28211|Alphaproteobacteria,3JVI7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase	gstch10	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N_3
SX3_k127_100905_18	1297865.APJD01000010_gene4886	4.661e-143	455.0	COG3821@1|root,COG3821@2|Bacteria,1RDXR@1224|Proteobacteria,2TTTD@28211|Alphaproteobacteria,3JS0T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function, DUF599	-	-	-	-	-	-	-	-	-	-	-	-	DUF599
SX3_k127_100905_11	1297865.APJD01000010_gene4885	3.149e-176	554.0	2DPWJ@1|root,333PH@2|Bacteria,1QMKY@1224|Proteobacteria,2U09G@28211|Alphaproteobacteria,3JVEJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_100905_13	1297865.APJD01000010_gene4884	1.13e-164	519.0	COG0656@1|root,COG0656@2|Bacteria,1MWFS@1224|Proteobacteria,2TT2Q@28211|Alphaproteobacteria,3JRGG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aldo/keto reductase family	yafB	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
SX3_k127_100905_4	1297865.APJD01000010_gene4883	2.479e-301	923.0	COG1858@1|root,COG1858@2|Bacteria,1MV70@1224|Proteobacteria,2TU35@28211|Alphaproteobacteria,3JX58@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Di-haem cytochrome c peroxidase	-	-	1.11.1.5	ko:K00428	-	-	-	-	ko00000,ko01000	-	-	-	CCP_MauG,Cytochrom_C
SX3_k127_100905_3	1297865.APJD01000010_gene4882	0.0	1073.0	COG3511@1|root,COG3511@2|Bacteria,1MVNS@1224|Proteobacteria,2U1QU@28211|Alphaproteobacteria,3JTQP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Phosphoesterase family	-	-	3.1.4.3	ko:K01114	ko00562,ko00564,ko00565,ko01100,ko01110,ko02024,ko04919,map00562,map00564,map00565,map01100,map01110,map02024,map04919	-	R01312,R02027,R02052,R03332,R07381	RC00017,RC00425	ko00000,ko00001,ko01000,ko02042	-	-	-	Phosphoesterase
SX3_k127_100905_8	1297865.APJD01000010_gene4881	2.213e-187	587.0	COG2207@1|root,COG2207@2|Bacteria,1MY46@1224|Proteobacteria,2TUHY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_6,HTH_18
SX3_k127_100905_17	1297865.APJD01000010_gene4880	3.057e-152	486.0	COG4221@1|root,COG4221@2|Bacteria,1R83E@1224|Proteobacteria,2TVY6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_100905_15	1297865.APJD01000010_gene4879	1.992e-162	512.0	COG1028@1|root,COG1028@2|Bacteria,1MW4W@1224|Proteobacteria,2V6H7@28211|Alphaproteobacteria,3K4R6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_100905_0	1297865.APJD01000010_gene4878	0.0	1921.0	COG3383@1|root,COG3383@2|Bacteria,1QTZB@1224|Proteobacteria,2TVZI@28211|Alphaproteobacteria,3JTEA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Formate dehydrogenase, alpha subunit	fdhA	-	1.17.1.9	ko:K00123	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	Fer2_4,Fer4,Fer4_7,Fer4_9,Molybdop_Fe4S4,Molybdopterin,Molydop_binding
SX3_k127_100905_2	1297865.APJD01000010_gene4877	0.0	1177.0	COG1894@1|root,COG1905@1|root,COG1894@2|Bacteria,COG1905@2|Bacteria,1MV8F@1224|Proteobacteria,2TR1V@28211|Alphaproteobacteria,3JR36@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region	nuoEF	-	1.17.1.9	ko:K00122	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	2Fe-2S_thioredx,Complex1_51K,NADH_4Fe-4S,SLBB
SX3_k127_101162_3	224911.27355408	1.682e-21	94.0	COG3288@1|root,COG3288@2|Bacteria,1MVXU@1224|Proteobacteria,2TSZN@28211|Alphaproteobacteria,3JU1M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Alanine dehydrogenase/PNT, C-terminal domain	pntAA	GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600	1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	AlaDh_PNT_C,AlaDh_PNT_N
SX3_k127_101162_4	172088.AUGA01000032_gene1460	1.074e-20	91.0	2EHA1@1|root,33B1X@2|Bacteria,1N6XW@1224|Proteobacteria,2UF37@28211|Alphaproteobacteria,3K10Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	cytochrome c oxidase subunit IV	MA20_03820	-	-	-	-	-	-	-	-	-	-	-	COX4_pro_2
SX3_k127_101162_0	1297865.APJD01000039_gene1744	0.0	1285.0	COG1164@1|root,COG1164@2|Bacteria,1MXAC@1224|Proteobacteria,2TRPY@28211|Alphaproteobacteria,3JUD8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Oligopeptidase F	pepF	-	-	ko:K08602	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M3,Peptidase_M3_N
SX3_k127_101162_1	1230476.C207_04430	6.853e-307	942.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,3JR1C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Sigma-54 interaction domain	tacA	GO:0003674,GO:0003700,GO:0004857,GO:0006355,GO:0008073,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010967,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033238,GO:0042979,GO:0043086,GO:0044092,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141	-	-	-	-	-	-	-	-	-	-	HTH_8,Response_reg,Sigma54_activ_2,Sigma54_activat
SX3_k127_101162_2	1297865.APJD01000039_gene1742	3.389e-210	660.0	COG2989@1|root,COG2989@2|Bacteria,1MV14@1224|Proteobacteria,2TRJ9@28211|Alphaproteobacteria,3JR7I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative peptidoglycan binding domain	-	-	-	ko:K21470	-	-	-	-	ko00000,ko01002,ko01011	-	-	-	PG_binding_1,YkuD
SX3_k127_1019420_21	1297865.APJD01000003_gene6074	2.39e-57	203.0	2A7R3@1|root,30WPW@2|Bacteria,1REIF@1224|Proteobacteria,2U7I5@28211|Alphaproteobacteria,3JZDS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_26595	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1019420_22	1297865.APJD01000003_gene6073	5.543e-50	183.0	COG0851@1|root,COG0851@2|Bacteria,1N6QD@1224|Proteobacteria,2UF6R@28211|Alphaproteobacteria,3JZC7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell	minE	-	-	ko:K03608	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	MinE
SX3_k127_1019420_15	1297865.APJD01000003_gene6072	7.6e-165	520.0	COG2894@1|root,COG2894@2|Bacteria,1MUEU@1224|Proteobacteria,2TSAG@28211|Alphaproteobacteria,3JTQF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Cellulose biosynthesis protein BcsQ	minD	-	-	ko:K03609	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31,CbiA
SX3_k127_1019420_19	1297865.APJD01000003_gene6071	2.636e-139	444.0	COG0850@1|root,COG0850@2|Bacteria,1RHVN@1224|Proteobacteria,2TUYE@28211|Alphaproteobacteria,3JTKE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization	minC	-	-	ko:K03610	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	MinC_C,MinC_N
SX3_k127_1019420_13	1297865.APJD01000003_gene6070	1.962e-196	613.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2TRIG@28211|Alphaproteobacteria,3JXP0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1019420_16	1297865.APJD01000003_gene6069	6.444e-160	518.0	COG0596@1|root,COG0596@2|Bacteria,1P6EB@1224|Proteobacteria,2TXDP@28211|Alphaproteobacteria,3K6Z5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	-	-	-	ko:K19707	-	-	-	-	ko00000,ko03021	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_1019420_23	1230476.C207_03939	2.175e-37	141.0	2EHBN@1|root,30YYQ@2|Bacteria,1NJ0S@1224|Proteobacteria,2UKCS@28211|Alphaproteobacteria,3K5BV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1019420_17	1297865.APJD01000003_gene6068	3.466e-146	464.0	COG1309@1|root,COG1309@2|Bacteria,1N4HB@1224|Proteobacteria,2U1IP@28211|Alphaproteobacteria,3JXG6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1019420_11	1297865.APJD01000003_gene6067	1.142e-216	673.0	COG0226@1|root,COG0226@2|Bacteria,1MUAZ@1224|Proteobacteria,2TTJA@28211|Alphaproteobacteria,3JU7Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex PstSACB involved in phosphate import	pstS	-	-	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	M00222	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.7	-	-	PBP_like_2
SX3_k127_1019420_12	1297865.APJD01000003_gene6066	1.993e-215	669.0	COG3181@1|root,COG3181@2|Bacteria,1MW18@1224|Proteobacteria,2U2TB@28211|Alphaproteobacteria,3JT1W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_1019420_8	1297865.APJD01000003_gene6065	2.653e-230	713.0	COG1162@1|root,COG1162@2|Bacteria,1MUEF@1224|Proteobacteria,2TR5R@28211|Alphaproteobacteria,3K3ZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	RsgA GTPase	rsgA	-	3.1.3.100	ko:K06949	ko00730,ko01100,map00730,map01100	-	R00615,R02135	RC00002,RC00017	ko00000,ko00001,ko01000,ko03009	-	-	-	RsgA_GTPase
SX3_k127_1019420_5	1297865.APJD01000003_gene6064	2.993e-265	826.0	COG2271@1|root,COG2271@2|Bacteria,1MUSX@1224|Proteobacteria,2TSQW@28211|Alphaproteobacteria,3K2XG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	ko:K08191	-	-	-	-	ko00000,ko02000	2.A.1.14.2	-	-	MFS_1
SX3_k127_1019420_9	1297865.APJD01000003_gene6063	2.154e-225	706.0	COG2070@1|root,COG2070@2|Bacteria,1MU2F@1224|Proteobacteria,2TRM9@28211|Alphaproteobacteria,3K2PH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FMN-dependent dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	NMO
SX3_k127_1019420_3	1297865.APJD01000003_gene6062	0.0	1047.0	COG3203@1|root,COG3203@2|Bacteria,1MXN6@1224|Proteobacteria,2TSH7@28211|Alphaproteobacteria,3JQSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	ropAch1	-	-	-	-	-	-	-	-	-	-	-	Porin_2
SX3_k127_1019420_18	1297865.APJD01000003_gene6061	2.874e-141	449.0	COG1309@1|root,COG1309@2|Bacteria,1N91A@1224|Proteobacteria,2VFY1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1019420_1	1297865.APJD01000003_gene6060	0.0	1598.0	COG3119@1|root,COG3119@2|Bacteria,1MV92@1224|Proteobacteria,2TTXG@28211|Alphaproteobacteria,3JVJZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sulfatase	-	-	-	-	-	-	-	-	-	-	-	-	Sulfatase
SX3_k127_1019420_10	1297865.APJD01000003_gene6059	2.094e-219	681.0	COG1262@1|root,COG1262@2|Bacteria,1MZ25@1224|Proteobacteria,2TRJH@28211|Alphaproteobacteria,3JTEW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase
SX3_k127_1019420_0	1297865.APJD01000003_gene6058	0.0	1604.0	COG3119@1|root,COG3119@2|Bacteria,1MV92@1224|Proteobacteria,2TTXG@28211|Alphaproteobacteria,3JVJZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sulfatase	-	-	-	-	-	-	-	-	-	-	-	-	Sulfatase
SX3_k127_1019420_2	1297865.APJD01000003_gene6057	0.0	1333.0	COG1042@1|root,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2TR24@28211|Alphaproteobacteria,3JRT1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA binding domain	-	-	-	-	-	-	-	-	-	-	-	-	ATP-grasp_5,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
SX3_k127_1019420_6	1297865.APJD01000003_gene6056	4.354e-265	818.0	COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,2TSK3@28211|Alphaproteobacteria,3JWBK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_16145	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_1019420_14	1297865.APJD01000003_gene6055	1.395e-193	603.0	COG2175@1|root,COG2175@2|Bacteria,1MV5K@1224|Proteobacteria,2TQTZ@28211|Alphaproteobacteria,3JY5P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Taurine catabolism dioxygenase TauD, TfdA family	-	-	1.14.11.17	ko:K03119	ko00430,ko00920,map00430,map00920	-	R05320	RC01331	ko00000,ko00001,ko01000	-	-	-	TauD
SX3_k127_1019420_20	1297865.APJD01000003_gene6054	3.692e-128	410.0	COG1309@1|root,COG1309@2|Bacteria,1NFRC@1224|Proteobacteria,2UGXZ@28211|Alphaproteobacteria,3K199@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1019420_4	1297865.APJD01000003_gene6053	9.38e-302	933.0	COG2376@1|root,COG2376@2|Bacteria,1MVSR@1224|Proteobacteria,2TTK3@28211|Alphaproteobacteria,3JUYN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Dak1 domain	dhaK	-	2.7.1.28,2.7.1.29,4.6.1.15	ko:K00863	ko00051,ko00561,ko00680,ko01100,ko01120,ko01200,ko04622,map00051,map00561,map00680,map01100,map01120,map01200,map04622	M00344	R01011,R01059	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Dak1,Dak2
SX3_k127_1019420_7	1297865.APJD01000003_gene6052	1.081e-255	790.0	COG0715@1|root,COG0715@2|Bacteria,1R9FK@1224|Proteobacteria,2U2KX@28211|Alphaproteobacteria,3K0BG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1/THI5 like	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
SX3_k127_1036144_1	1297865.APJD01000004_gene5379	2.755e-310	953.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JS7F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Efflux pump membrane transporter	MA20_18040	-	-	ko:K18138,ko:K18146	ko01501,ko01503,map01501,map01503	M00647,M00649,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2,2.A.6.2.40	-	-	ACR_tran
SX3_k127_1036144_3	1297865.APJD01000004_gene5378	6.187e-248	766.0	COG4637@1|root,COG4637@2|Bacteria,1ND40@1224|Proteobacteria,2TTJW@28211|Alphaproteobacteria,3JW27@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain, putative AbiEii toxin, Type IV TA system	-	-	-	-	-	-	-	-	-	-	-	-	AAA_15,AAA_21
SX3_k127_1036144_8	1297865.APJD01000004_gene5377	1.153e-171	540.0	COG0483@1|root,COG0483@2|Bacteria,1MUQT@1224|Proteobacteria,2TR06@28211|Alphaproteobacteria,3JS0C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Inositol monophosphatase	suhB	-	3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
SX3_k127_1036144_7	1297865.APJD01000004_gene5376	2.154e-212	668.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2TR2B@28211|Alphaproteobacteria,3JRKY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sel1-like repeats.	-	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
SX3_k127_1036144_9	1297865.APJD01000004_gene5375	5.066e-134	428.0	COG0352@1|root,COG0352@2|Bacteria,1MV42@1224|Proteobacteria,2TSSA@28211|Alphaproteobacteria,3JS4M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Thiamine monophosphate synthase	thiE	-	2.5.1.3	ko:K00788	ko00730,ko01100,map00730,map01100	M00127	R03223,R10712	RC00224,RC03255,RC03397	ko00000,ko00001,ko00002,ko01000	-	-	-	TMP-TENI
SX3_k127_1036144_5	1230476.C207_02667	3.695e-219	681.0	COG3588@1|root,COG3588@2|Bacteria,1MVFK@1224|Proteobacteria,2TSIV@28211|Alphaproteobacteria,3JVD2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Fructose-bisphosphate aldolase class-I	fbaB	-	4.1.2.13	ko:K01623	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003,M00165,M00167	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147	-	-	-	Glycolytic
SX3_k127_1036144_4	1230476.C207_02668	8.652e-231	715.0	COG0191@1|root,COG0191@2|Bacteria,1MURX@1224|Proteobacteria,2TSAD@28211|Alphaproteobacteria,3JS5T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Function of homologous gene experimentally demonstrated in an other organism	cbbA	-	4.1.2.13	ko:K01624	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003,M00165,M00167,M00344,M00345	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	F_bP_aldolase
SX3_k127_1036144_2	1297865.APJD01000004_gene5372	3.253e-251	776.0	COG0126@1|root,COG0126@2|Bacteria,1MUNU@1224|Proteobacteria,2TSKQ@28211|Alphaproteobacteria,3JQMR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the phosphoglycerate kinase family	pgk	GO:0003674,GO:0003824,GO:0004618,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	2.7.2.3	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01512	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGK
SX3_k127_1036144_6	1297865.APJD01000004_gene5371	2.255e-216	675.0	COG0057@1|root,COG0057@2|Bacteria,1MU93@1224|Proteobacteria,2TR6E@28211|Alphaproteobacteria,3JSED@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	gapA	-	1.2.1.12	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	M00001,M00002,M00003,M00165,M00166,M00308,M00552	R01061	RC00149	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	Gp_dh_C,Gp_dh_N
SX3_k127_1036144_0	1297865.APJD01000004_gene5370	0.0	1209.0	COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,2TQUX@28211|Alphaproteobacteria,3JUC9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate	tktA	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transket_pyr,Transketolase_C,Transketolase_N
SX3_k127_1036144_10	420662.Mpe_A2790	1.69e-18	88.0	COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,2VHNX@28216|Betaproteobacteria,1KKID@119065|unclassified Burkholderiales	28216|Betaproteobacteria	H	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	-	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	TAL_FSA,Transket_pyr,Transketolase_C,Transketolase_N
SX3_k127_106963_4	398525.KB900701_gene5313	1.379e-134	431.0	COG1612@1|root,COG1612@2|Bacteria,1MVJ4@1224|Proteobacteria,2TR0M@28211|Alphaproteobacteria,3JR20@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group	ctaA	-	-	ko:K02259	ko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714	M00154	R07412	RC00769	ko00000,ko00001,ko00002,ko03029	3.D.4.4	-	-	COX15-CtaA
SX3_k127_106963_6	1297865.APJD01000020_gene98	5.926e-36	138.0	2EFTF@1|root,339JI@2|Bacteria,1N78S@1224|Proteobacteria,2UG3X@28211|Alphaproteobacteria,3K0ZB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2842)	MA20_36920	-	-	-	-	-	-	-	-	-	-	-	DUF2842
SX3_k127_106963_5	1122963.AUHB01000018_gene2084	2.171e-110	362.0	COG0030@1|root,COG0030@2|Bacteria,1R0K7@1224|Proteobacteria,2U8JF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	Ribosomal RNA adenine dimethylase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_106963_1	1297865.APJD01000020_gene96	5.884e-231	715.0	COG0726@1|root,COG0726@2|Bacteria,1MVVK@1224|Proteobacteria,2TV75@28211|Alphaproteobacteria,3JTJU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	polysaccharide deacetylase	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_106963_0	1297865.APJD01000020_gene95	1.565e-261	806.0	COG5653@1|root,COG5653@2|Bacteria,1MVAR@1224|Proteobacteria,2TTKY@28211|Alphaproteobacteria,3JRH4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_6
SX3_k127_106963_3	1297865.APJD01000020_gene94	2.136e-183	575.0	COG0583@1|root,COG0583@2|Bacteria,1Q6E2@1224|Proteobacteria,2U2WM@28211|Alphaproteobacteria,3JVQK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	gbpR	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_106963_2	1297865.APJD01000020_gene93	5.278e-211	659.0	COG2271@1|root,COG2271@2|Bacteria,1MUEK@1224|Proteobacteria,2TS60@28211|Alphaproteobacteria,3JWWC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	ko:K13021	-	-	-	-	ko00000,ko02000	2.A.1.14.3	-	-	MFS_1
SX3_k127_1076057_10	1297865.APJD01000018_gene5746	2.299e-30	121.0	COG0667@1|root,COG0667@2|Bacteria,1MWGQ@1224|Proteobacteria,2TUJ8@28211|Alphaproteobacteria,3JRSP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldo/keto reductase family	-	-	1.1.1.122	ko:K00064	ko00051,ko00053,ko01100,ko01110,ko01120,map00051,map00053,map01100,map01110,map01120	M00114	R07675,R08926	RC00066,RC00161	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldo_ket_red
SX3_k127_1076057_3	1297865.APJD01000018_gene5745	3.84e-226	703.0	28X2W@1|root,2ZJ1E@2|Bacteria,1R92Z@1224|Proteobacteria,2TS5H@28211|Alphaproteobacteria,3JXJZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PcfJ
SX3_k127_1076057_9	1297865.APJD01000018_gene5744	6.626e-64	219.0	COG2329@1|root,COG2329@2|Bacteria,1NDM8@1224|Proteobacteria,2UG48@28211|Alphaproteobacteria,3JZNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ydhR
SX3_k127_1076057_6	1297865.APJD01000018_gene5743	2.827e-118	381.0	COG1309@1|root,COG1309@2|Bacteria,1R679@1224|Proteobacteria,2TRSA@28211|Alphaproteobacteria,3JUJW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1076057_8	398525.KB900701_gene7457	2.635e-76	257.0	COG3791@1|root,COG3791@2|Bacteria,1PSHT@1224|Proteobacteria,2VANH@28211|Alphaproteobacteria,3K4DU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
SX3_k127_1076057_5	1297865.APJD01000018_gene5741	6.192e-198	620.0	arCOG11957@1|root,2Z84N@2|Bacteria,1QIVS@1224|Proteobacteria,2U486@28211|Alphaproteobacteria,3K3JA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1076057_2	1230476.C207_00151	1.006e-234	728.0	COG0683@1|root,COG0683@2|Bacteria,1MWJ1@1224|Proteobacteria,2TT0T@28211|Alphaproteobacteria,3JWGZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	braC	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1076057_1	1297865.APJD01000018_gene5739	1.1e-245	762.0	COG2334@1|root,COG2334@2|Bacteria,1R27Y@1224|Proteobacteria,2UK4N@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Phosphotransferase enzyme family	-	-	-	-	-	-	-	-	-	-	-	-	APH
SX3_k127_1076057_0	1297865.APJD01000018_gene5738	2.438e-259	802.0	COG1960@1|root,COG1960@2|Bacteria,1MXMQ@1224|Proteobacteria,2U0CV@28211|Alphaproteobacteria,3JX3A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.14.13.235	ko:K22027	-	-	-	-	ko00000,ko01000	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_N
SX3_k127_1076057_4	1297865.APJD01000018_gene5737	2.446e-224	696.0	COG3693@1|root,COG3693@2|Bacteria,1P7A6@1224|Proteobacteria,2TT8P@28211|Alphaproteobacteria,3JX5V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Domain of unknown function (DUF4424)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4424
SX3_k127_1076057_7	1297865.APJD01000018_gene5736	3.096e-106	346.0	COG0500@1|root,COG0500@2|Bacteria	2|Bacteria	Q	methyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
SX3_k127_109731_5	1297865.APJD01000033_gene6945	4.005e-63	217.0	COG0782@1|root,COG0782@2|Bacteria,1RHU5@1224|Proteobacteria,2U95I@28211|Alphaproteobacteria,3JYH7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcription elongation factor, GreA/GreB, C-term	greB	-	-	-	-	-	-	-	-	-	-	-	GreA_GreB
SX3_k127_109731_2	1297865.APJD01000033_gene6944	8.662e-129	412.0	COG1802@1|root,COG1802@2|Bacteria,1P2DT@1224|Proteobacteria,2TSI4@28211|Alphaproteobacteria,3JSII@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_109731_1	1297865.APJD01000033_gene6943	1.051e-219	681.0	COG0502@1|root,COG0502@2|Bacteria,1MVFF@1224|Proteobacteria,2TSD6@28211|Alphaproteobacteria,3JQNU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism	bioB	-	2.8.1.6	ko:K01012	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R01078	RC00441	ko00000,ko00001,ko00002,ko01000	-	-	-	BATS,Radical_SAM
SX3_k127_109731_0	1297865.APJD01000033_gene6942	3.59e-249	769.0	COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,2TTAK@28211|Alphaproteobacteria,3JRMK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Aminotransferase class I and II	bioF	-	2.3.1.47	ko:K00652	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R03210,R10124	RC00004,RC00039,RC02725	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
SX3_k127_109731_4	172088.AUGA01000006_gene8040	6.564e-111	365.0	COG0132@1|root,COG0132@2|Bacteria,1RDRK@1224|Proteobacteria,2U5AJ@28211|Alphaproteobacteria,3JW8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring	bioD	GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.1.197,6.3.3.3	ko:K01935,ko:K02169	ko00780,ko01100,map00780,map01100	M00123,M00572,M00573,M00577	R03182,R09543	RC00003,RC00460,RC00868	ko00000,ko00001,ko00002,ko01000	-	-	-	AAA_26
SX3_k127_109731_3	1297865.APJD01000033_gene6940	3.026e-126	417.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,3JR83@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	bioA	-	2.6.1.62	ko:K00833	ko00780,ko01100,map00780,map01100	M00123,M00573,M00577	R03231	RC00006,RC00887	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
SX3_k127_1098270_8	1297865.APJD01000010_gene4970	1.165e-189	595.0	COG0745@1|root,COG0745@2|Bacteria,1MX29@1224|Proteobacteria,2TV8G@28211|Alphaproteobacteria,3JR5C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	RESPONSE REGULATOR receiver	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1098270_19	1230476.C207_05754	3.532e-39	148.0	2EHXX@1|root,33BPE@2|Bacteria,1N90E@1224|Proteobacteria,2UFK2@28211|Alphaproteobacteria,3K14U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1098270_4	1297865.APJD01000010_gene4972	1.934e-232	724.0	COG2114@1|root,COG2114@2|Bacteria,1N3JU@1224|Proteobacteria,2U05E@28211|Alphaproteobacteria,3JTMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc
SX3_k127_1098270_15	1297865.APJD01000010_gene4973	7.416e-95	319.0	COG3832@1|root,COG3832@2|Bacteria,1Q51U@1224|Proteobacteria,2TSKI@28211|Alphaproteobacteria,3JW89@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_1098270_11	1297865.APJD01000010_gene4974	7.495e-139	450.0	COG1418@1|root,COG1418@2|Bacteria,1MV0J@1224|Proteobacteria,2TVFS@28211|Alphaproteobacteria,3JQWX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	-	-	-	-	-	-	-	-	-	-	-	-	HD
SX3_k127_1098270_5	1297865.APJD01000010_gene4975	7.107e-206	642.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,2TS7I@28211|Alphaproteobacteria,3JR98@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DJ-1/PfpI family	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI,HTH_18
SX3_k127_1098270_13	1297865.APJD01000010_gene4976	1.846e-123	396.0	COG0406@1|root,COG0406@2|Bacteria,1RH8P@1224|Proteobacteria,2TVG2@28211|Alphaproteobacteria,3JXPM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	alpha-ribazole phosphatase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1098270_16	1297865.APJD01000010_gene4977	3.44e-69	237.0	COG2315@1|root,COG2315@2|Bacteria,1RHEZ@1224|Proteobacteria,2U97K@28211|Alphaproteobacteria,3JZ02@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YjbR	-	-	-	-	-	-	-	-	-	-	-	-	YjbR
SX3_k127_1098270_14	1230476.C207_05748	1.382e-120	389.0	COG1695@1|root,COG1695@2|Bacteria,1RHSE@1224|Proteobacteria,2U1HF@28211|Alphaproteobacteria,3JVTZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulator PadR family	yqjI	-	-	-	-	-	-	-	-	-	-	-	PadR
SX3_k127_1098270_12	1297865.APJD01000010_gene4979	5.705e-136	436.0	COG4122@1|root,COG4122@2|Bacteria,1N57D@1224|Proteobacteria,2TT8Y@28211|Alphaproteobacteria,3JTNU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	O-methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24,Methyltransf_3
SX3_k127_1098270_10	1297865.APJD01000010_gene4980	2.081e-146	466.0	COG3393@1|root,COG3393@2|Bacteria,1RAAU@1224|Proteobacteria,2TT9P@28211|Alphaproteobacteria,3JW0C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FR47-like protein	MA20_27790	-	-	-	-	-	-	-	-	-	-	-	FR47
SX3_k127_1098270_2	1297865.APJD01000010_gene4981	1.826e-250	781.0	COG1680@1|root,COG1680@2|Bacteria,1QD0J@1224|Proteobacteria,2U189@28211|Alphaproteobacteria,3JY8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_1098270_0	1297865.APJD01000010_gene4982	0.0	1273.0	COG5434@1|root,COG5434@2|Bacteria,1R7P2@1224|Proteobacteria,2U0DS@28211|Alphaproteobacteria,3JXFX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Right handed beta helix region	-	-	-	-	-	-	-	-	-	-	-	-	Beta_helix
SX3_k127_1098270_6	1297865.APJD01000010_gene4983	8.359e-193	602.0	COG0693@1|root,COG0693@2|Bacteria,1R41H@1224|Proteobacteria,2TUJM@28211|Alphaproteobacteria,3JXZN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	intracellular protease amidase	-	-	3.5.1.124,4.2.1.130	ko:K05523	ko00620,ko01120,map00620,map01120	-	R09796	RC02658	ko00000,ko00001,ko01000,ko01002	-	-	-	DJ-1_PfpI
SX3_k127_1098270_9	1297865.APJD01000010_gene4984	1.584e-146	465.0	COG2197@1|root,COG2197@2|Bacteria,1NH4V@1224|Proteobacteria,2TWZ4@28211|Alphaproteobacteria,3JWM3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Autoinducer binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Autoind_bind,GerE
SX3_k127_1098270_7	1297865.APJD01000010_gene4985	6.675e-192	600.0	COG0583@1|root,COG0583@2|Bacteria,1MZTA@1224|Proteobacteria,2U1KF@28211|Alphaproteobacteria,3JYYA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1098270_3	1297865.APJD01000010_gene4986	4.602e-233	726.0	COG2271@1|root,COG2271@2|Bacteria,1QWJ9@1224|Proteobacteria,2TWZ5@28211|Alphaproteobacteria,3JW98@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1098270_17	1230476.C207_05739	1.053e-64	223.0	2DP7H@1|root,330V6@2|Bacteria,1R3EB@1224|Proteobacteria,2U01I@28211|Alphaproteobacteria,3JYRG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Conserved hypothetical protein (Lin0512_fam)	MA20_27785	-	-	-	-	-	-	-	-	-	-	-	Lin0512_fam
SX3_k127_1098270_1	1297865.APJD01000010_gene4988	0.0	1158.0	COG0129@1|root,COG0129@2|Bacteria,1R7EQ@1224|Proteobacteria,2U2PJ@28211|Alphaproteobacteria,3JX2Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	Dehydratase family	-	-	-	-	-	-	-	-	-	-	-	-	ILVD_EDD
SX3_k127_1098270_18	1297865.APJD01000010_gene4989	2.733e-49	176.0	COG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,2U149@28211|Alphaproteobacteria,3JUGF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	ko:K13774	ko00281,map00281	-	R08087,R08096,R10125,R10126	RC00080,RC00087	ko00000,ko00001	-	-	-	adh_short_C2
SX3_k127_1110920_16	1297865.APJD01000019_gene3274	6.5e-79	263.0	COG0526@1|root,COG0526@2|Bacteria,1RI3N@1224|Proteobacteria,2TSEW@28211|Alphaproteobacteria,3JRPK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CO	Redoxin	ccmG	GO:0005575,GO:0005623,GO:0042597,GO:0044464	-	ko:K02199	-	-	-	-	ko00000,ko03110	-	-	-	AhpC-TSA,Redoxin
SX3_k127_1110920_18	1297865.APJD01000019_gene3273	3.413e-67	230.0	COG1555@1|root,COG1555@2|Bacteria,1N7MI@1224|Proteobacteria,2U8WE@28211|Alphaproteobacteria,3JYXP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Helix-hairpin-helix motif	-	-	-	-	-	-	-	-	-	-	-	-	HHH_3
SX3_k127_1110920_14	1297865.APJD01000019_gene3272	4.053e-120	390.0	COG2917@1|root,COG2917@2|Bacteria,1NWIZ@1224|Proteobacteria,2U74X@28211|Alphaproteobacteria,3JU97@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	probably involved in intracellular septation	ispZ	-	-	ko:K06190	-	-	-	-	ko00000	-	-	-	IspA
SX3_k127_1110920_8	1297865.APJD01000019_gene3271	4.616e-190	595.0	COG0552@1|root,COG0552@2|Bacteria,1MUDU@1224|Proteobacteria,2TS0M@28211|Alphaproteobacteria,3JQNZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	ftsY	-	-	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2,3.A.5.7	-	-	SRP54,SRP54_N
SX3_k127_1110920_9	1297865.APJD01000019_gene3270	3.462e-157	496.0	COG0564@1|root,COG0564@2|Bacteria,1MVJ5@1224|Proteobacteria,2TSCG@28211|Alphaproteobacteria,3JRTQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Pseudouridine synthase	MA20_43745	-	5.4.99.28,5.4.99.29	ko:K06177	-	-	-	-	ko00000,ko01000,ko03009,ko03016	-	-	-	PseudoU_synth_2
SX3_k127_1110920_5	1297865.APJD01000019_gene3269	1.058e-231	730.0	COG5330@1|root,COG5330@2|Bacteria,1R3VY@1224|Proteobacteria,2TUGG@28211|Alphaproteobacteria,3JUE9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	MA20_43740	-	-	-	-	-	-	-	-	-	-	-	DUF2336
SX3_k127_1110920_2	1297865.APJD01000019_gene3267	1.675e-274	846.0	COG0621@1|root,COG0621@2|Bacteria,1MUCS@1224|Proteobacteria,2TRYD@28211|Alphaproteobacteria,3JTP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	MiaB-like tRNA modifying enzyme	mtaB	GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035598,GO:0035600,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050497,GO:0071704,GO:0090304,GO:1901360	2.8.4.5	ko:K18707	-	-	R10649	RC00003,RC03221	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,UPF0004
SX3_k127_1110920_6	1297865.APJD01000019_gene3266	7.634e-194	605.0	COG0253@1|root,COG0253@2|Bacteria,1MWDH@1224|Proteobacteria,2TUF2@28211|Alphaproteobacteria,3JR65@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan	dapF	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.1.1.7	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00527	R02735	RC00302	ko00000,ko00001,ko00002,ko01000	-	-	-	DAP_epimerase
SX3_k127_1110920_12	1297865.APJD01000019_gene3265	1.912e-135	439.0	COG4978@1|root,COG4978@2|Bacteria,1R4X9@1224|Proteobacteria,2TUZK@28211|Alphaproteobacteria,3JTV1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	Bacterial transcription activator, effector binding domain	MA20_43725	-	-	-	-	-	-	-	-	-	-	-	GyrI-like
SX3_k127_1110920_11	1297865.APJD01000019_gene3264	2.038e-142	455.0	COG2968@1|root,COG2968@2|Bacteria,1RH7T@1224|Proteobacteria,2U981@28211|Alphaproteobacteria,3JVGB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF541)	omp28	GO:0005575,GO:0005623,GO:0042597,GO:0044464	-	ko:K09807	-	-	-	-	ko00000	-	-	-	SIMPL
SX3_k127_1110920_4	1297865.APJD01000019_gene3263	1.192e-238	737.0	COG2220@1|root,COG2220@2|Bacteria,1MV20@1224|Proteobacteria,2TRBC@28211|Alphaproteobacteria,3JSHY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Beta-lactamase superfamily domain	romA	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_2
SX3_k127_1110920_22	224911.27348729	2.631e-07	55.0	COG0541@1|root,COG0541@2|Bacteria,1MVIA@1224|Proteobacteria,2TQSW@28211|Alphaproteobacteria,3JR15@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	ffh	-	3.6.5.4	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko01000,ko02044	3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9	-	-	SRP54,SRP54_N,SRP_SPB
SX3_k127_1110920_0	1230476.C207_04693	0.0	996.0	COG0541@1|root,COG0541@2|Bacteria,1MVIA@1224|Proteobacteria,2TQSW@28211|Alphaproteobacteria,3JR15@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	ffh	-	3.6.5.4	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko01000,ko02044	3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9	-	-	SRP54,SRP54_N,SRP_SPB
SX3_k127_1110920_19	1297865.APJD01000019_gene3261	8.511e-63	216.0	COG0228@1|root,COG0228@2|Bacteria,1MZCT@1224|Proteobacteria,2U94X@28211|Alphaproteobacteria,3JYTG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bS16 family	rpsP	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02959	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S16
SX3_k127_1110920_15	1297865.APJD01000019_gene3260	1.437e-108	351.0	COG0806@1|root,COG0806@2|Bacteria,1MWQR@1224|Proteobacteria,2U9UT@28211|Alphaproteobacteria,3JT77@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes	rimM	-	-	ko:K02860	-	-	-	-	ko00000,ko03009	-	-	-	PRC,RimM
SX3_k127_1110920_7	1297865.APJD01000019_gene3259	1.131e-192	601.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,3JQYD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_1110920_3	1297865.APJD01000019_gene3258	2.961e-243	753.0	COG0477@1|root,COG2814@2|Bacteria,1MVQ8@1224|Proteobacteria,2TV49@28211|Alphaproteobacteria,3JW3C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1110920_10	1297865.APJD01000019_gene3257	5.453e-155	490.0	COG0336@1|root,COG0336@2|Bacteria,1MUN1@1224|Proteobacteria,2TSIZ@28211|Alphaproteobacteria,3JUNP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the RNA methyltransferase TrmD family	trmD	GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.228	ko:K00554	-	-	R00597	RC00003,RC00334	ko00000,ko01000,ko03016	-	-	-	tRNA_m1G_MT
SX3_k127_1110920_17	1298867.AUES01000040_gene958	2.753e-78	267.0	COG0335@1|root,COG0335@2|Bacteria,1RH3A@1224|Proteobacteria,2U9DF@28211|Alphaproteobacteria,3JYVU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	rplS	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02884	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L19
SX3_k127_1110920_21	196490.AUEZ01000023_gene7190	2.497e-13	70.0	2AI49@1|root,318IB@2|Bacteria,1NP60@1224|Proteobacteria,2UJQ3@28211|Alphaproteobacteria,3K1T8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1110920_1	1297865.APJD01000019_gene3255	4.419e-315	966.0	COG0065@1|root,COG0065@2|Bacteria,1MVYR@1224|Proteobacteria,2TR6K@28211|Alphaproteobacteria,3JUMY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	leuC	-	4.2.1.33,4.2.1.35	ko:K01703	ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170	RC00497,RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase
SX3_k127_1110920_20	1297865.APJD01000019_gene3254	5.864e-41	154.0	2CEKU@1|root,301C3@2|Bacteria,1N755@1224|Proteobacteria,2UHT2@28211|Alphaproteobacteria,3K0WC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1115851_2	1297865.APJD01000007_gene2125	3.93e-163	514.0	COG4446@1|root,COG4446@2|Bacteria,1N31A@1224|Proteobacteria,2U0NZ@28211|Alphaproteobacteria,3JU37@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1499)	MA20_07395	-	-	-	-	-	-	-	-	-	-	-	DUF1499
SX3_k127_1115851_1	1297865.APJD01000007_gene2124	3.091e-203	633.0	COG0491@1|root,COG0491@2|Bacteria,1MVC3@1224|Proteobacteria,2TUAZ@28211|Alphaproteobacteria,3JRMU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	MA20_07390	-	3.1.2.6	ko:K01069	ko00620,map00620	-	R01736	RC00004,RC00137	ko00000,ko00001,ko01000	-	-	-	Lactamase_B
SX3_k127_1115851_0	1297865.APJD01000007_gene2123	1.06e-266	822.0	COG1960@1|root,COG1960@2|Bacteria,1MUK0@1224|Proteobacteria,2TSAC@28211|Alphaproteobacteria,3JS55@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	gcdH	-	1.3.8.6	ko:K00252	ko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,map00071,map00310,map00362,map00380,map01100,map01120,map01130	M00032	R02487,R02488,R10074	RC00052,RC00156	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_1125311_13	323097.Nham_4451	6.366e-39	145.0	COG0629@1|root,COG0629@2|Bacteria,1RGKI@1224|Proteobacteria,2U8I4@28211|Alphaproteobacteria,3JYYF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Single-strand binding protein family	-	-	-	-	-	-	-	-	-	-	-	-	SSB
SX3_k127_1125311_10	883078.HMPREF9695_05007	6.648e-79	271.0	COG1525@1|root,COG1525@2|Bacteria,1RI82@1224|Proteobacteria,2U9NI@28211|Alphaproteobacteria,3JXH4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	nuclease	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1125311_9	1197906.CAJQ02000056_gene3669	1.642e-92	306.0	2ED15@1|root,336Y3@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1125311_6	1197906.CAJQ02000056_gene3668	1.153e-128	414.0	COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,2TQTD@28211|Alphaproteobacteria,3JWNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	-	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_1125311_12	1197906.CAJQ02000056_gene3667	4.669e-52	184.0	COG3838@1|root,COG3838@2|Bacteria,1NJ0X@1224|Proteobacteria,2UJTF@28211|Alphaproteobacteria,3JZZ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TrbC/VIRB2 family	virB2	-	-	ko:K03197	ko03070,ko05134,map03070,map05134	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	TrbC
SX3_k127_1125311_11	1197906.CAJQ02000056_gene3666	7.316e-54	197.0	COG3702@1|root,COG3702@2|Bacteria,1RGVU@1224|Proteobacteria,2VGS9@28211|Alphaproteobacteria,3JZRY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Type IV secretory pathway, VirB3-like protein	-	-	-	ko:K03198	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	VirB3
SX3_k127_1125311_0	1197906.CAJQ02000056_gene3665	0.0	1560.0	COG3451@1|root,COG3451@2|Bacteria,1MXH0@1224|Proteobacteria,2TR1U@28211|Alphaproteobacteria,3JRFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	component of type IV transporter system	virB4	-	-	ko:K03199	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	CagE_TrbE_VirB
SX3_k127_1125311_8	504832.OCAR_7696	5.036e-114	375.0	2FGDE@1|root,3489K@2|Bacteria,1R96B@1224|Proteobacteria,2U4A7@28211|Alphaproteobacteria,3JWDC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1125311_7	1197906.CAJQ02000055_gene4069	1.052e-122	396.0	29I1K@1|root,304YP@2|Bacteria,1RG48@1224|Proteobacteria,2U0N8@28211|Alphaproteobacteria,3JUBT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Type IV secretion system proteins	-	-	-	-	-	-	-	-	-	-	-	-	T4SS
SX3_k127_1125311_15	1197906.CAJQ02000055_gene4067	3.4e-28	115.0	29UZT@1|root,30GCU@2|Bacteria,1P8X7@1224|Proteobacteria,2UY0Z@28211|Alphaproteobacteria,3K5E2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1125311_2	1197906.CAJQ02000055_gene4066	5.434e-217	678.0	COG3704@1|root,COG3704@2|Bacteria,1R71U@1224|Proteobacteria,2U4ZX@28211|Alphaproteobacteria,3JVZ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TrbL/VirB6 plasmid conjugal transfer protein	virB6	-	-	ko:K03201	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	TrbL
SX3_k127_1125311_5	1197906.CAJQ02000055_gene4065	1.57e-142	454.0	COG3736@1|root,COG3736@2|Bacteria,1MXRC@1224|Proteobacteria,2U2AZ@28211|Alphaproteobacteria,3JVQ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	VirB8 protein	virB8	-	-	ko:K03203	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	VirB8
SX3_k127_1125311_4	1197906.CAJQ02000055_gene4064	4.226e-164	518.0	COG3504@1|root,COG3504@2|Bacteria,1MVHJ@1224|Proteobacteria,2U07J@28211|Alphaproteobacteria,3JV7J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Conjugal transfer protein	-	-	-	ko:K03204	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	CagX
SX3_k127_1125311_1	1197906.CAJQ02000055_gene4063	6.665e-234	729.0	COG2948@1|root,COG2948@2|Bacteria,1MU7U@1224|Proteobacteria,2VEQH@28211|Alphaproteobacteria,3K6CX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Bacterial conjugation TrbI-like protein	-	-	-	ko:K03195,ko:K20533	ko02024,ko03070,map02024,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7,3.A.7.4	-	-	TrbI
SX3_k127_1125311_3	1197906.CAJQ02000054_gene1139	8.967e-208	651.0	COG0630@1|root,COG0630@2|Bacteria,1QUJ6@1224|Proteobacteria,2TW2D@28211|Alphaproteobacteria,3K6IQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Type II/IV secretion system protein	virB11	-	-	ko:K02283,ko:K03196	ko03070,ko05120,map03070,map05120	M00333,M00564	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.7	-	-	T2SSE
SX3_k127_1125311_14	1040987.AZUY01000022_gene1556	7.857e-32	137.0	COG3505@1|root,COG3505@2|Bacteria,1MV1G@1224|Proteobacteria,2TR6N@28211|Alphaproteobacteria,43N9B@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	U	TraM recognition site of TraD and TraG	virD4	-	-	ko:K03205	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	T4SS-DNA_transf
SX3_k127_1151764_2	1297865.APJD01000036_gene1438	3.987e-47	169.0	COG0008@1|root,COG0008@2|Bacteria,1MUN7@1224|Proteobacteria,2TR2V@28211|Alphaproteobacteria,3JUNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the class-I aminoacyl-tRNA synthetase family	gluQ	-	-	ko:K01894	-	-	-	-	ko00000,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1c
SX3_k127_1151764_0	1297865.APJD01000036_gene1439	5.606e-261	807.0	COG0642@1|root,COG0784@1|root,COG0642@2|Bacteria,COG0784@2|Bacteria,1NC9X@1224|Proteobacteria,2TWQ8@28211|Alphaproteobacteria,3K6KY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,Response_reg
SX3_k127_1151764_1	78245.Xaut_0308	3.432e-89	309.0	COG1295@1|root,COG1295@2|Bacteria,1MXQA@1224|Proteobacteria,2TTN5@28211|Alphaproteobacteria,3EZ17@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	Virulence factor BrkB	MA20_20550	-	-	ko:K07058	-	-	-	-	ko00000	-	-	-	Virul_fac_BrkB
SX3_k127_1151764_3	1230476.C207_05107	2.381e-31	124.0	2C8F7@1|root,33A2N@2|Bacteria,1NH9E@1224|Proteobacteria,2UJFC@28211|Alphaproteobacteria,3K15P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Hypoxia induced protein conserved region	MA20_20545	-	-	-	-	-	-	-	-	-	-	-	HIG_1_N
SX3_k127_1157404_3	1297865.APJD01000020_gene126	2.664e-170	535.0	COG4221@1|root,COG4221@2|Bacteria,1R83E@1224|Proteobacteria,2TVY6@28211|Alphaproteobacteria,3JXDD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_1157404_2	1297865.APJD01000020_gene127	1.18e-194	608.0	COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2TUNU@28211|Alphaproteobacteria,3JUG2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1157404_6	1297865.APJD01000020_gene129	2.15e-68	233.0	COG2329@1|root,COG2329@2|Bacteria,1RCYM@1224|Proteobacteria,2U7PT@28211|Alphaproteobacteria,3K6AH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1157404_4	1297865.APJD01000020_gene130	9.371e-166	523.0	COG0457@1|root,COG0457@2|Bacteria,1QAEC@1224|Proteobacteria,2VEQQ@28211|Alphaproteobacteria,3K6CY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_19
SX3_k127_1157404_5	1297865.APJD01000020_gene131	2.239e-164	517.0	28Q4W@1|root,2ZCMZ@2|Bacteria,1MX8J@1224|Proteobacteria,2U0AB@28211|Alphaproteobacteria,3JTV5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1157404_1	1297865.APJD01000020_gene132	2.859e-231	730.0	COG4948@1|root,COG4948@2|Bacteria,1MYZE@1224|Proteobacteria,2TU3A@28211|Alphaproteobacteria,3JW29@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	MA20_06335	-	4.2.1.156,4.2.1.42,5.1.2.2	ko:K01781,ko:K20023	ko00053,ko00627,ko01120,map00053,map00627,map01120	-	R03791,R04161,R05608	RC00543,RC00998	ko00000,ko00001,ko01000	-	-	-	MR_MLE_C,MR_MLE_N
SX3_k127_1157404_0	1297865.APJD01000020_gene133	4.441e-277	856.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2TQXH@28211|Alphaproteobacteria,3JRZF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Multicopper oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
SX3_k127_1157404_9	1120963.KB894491_gene1107	5.62e-06	55.0	2DE24@1|root,2ZK69@2|Bacteria,1P9N5@1224|Proteobacteria,1SU0Y@1236|Gammaproteobacteria	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1157404_8	1298867.AUES01000004_gene642	3.607e-40	149.0	COG0544@1|root,COG0544@2|Bacteria,1MUJP@1224|Proteobacteria,2TS8W@28211|Alphaproteobacteria,3JSQU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase	tig	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K03545	-	-	-	-	ko00000	-	-	-	FKBP_C,Trigger_C,Trigger_N
SX3_k127_1159154_6	1502724.FF80_03525	0.0007747	43.0	COG1298@1|root,COG1298@2|Bacteria,1MUF3@1224|Proteobacteria,2TQUR@28211|Alphaproteobacteria,3N635@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	N	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin	flhA	-	-	ko:K02400	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FHIPEP
SX3_k127_1159154_1	172088.AUGA01000047_gene1377	0.0	1023.0	COG1298@1|root,COG1298@2|Bacteria,1MUF3@1224|Proteobacteria,2TQUR@28211|Alphaproteobacteria,3JR3G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin	flhA	-	-	ko:K02400	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FHIPEP
SX3_k127_1159154_5	1297865.APJD01000024_gene409	1.763e-43	158.0	2AFUM@1|root,315X2@2|Bacteria,1NFM8@1224|Proteobacteria,2UI30@28211|Alphaproteobacteria,3K1NQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1159154_4	1297865.APJD01000024_gene408	1.425e-81	276.0	29CS9@1|root,2ZZQF@2|Bacteria,1N14R@1224|Proteobacteria,2UDSQ@28211|Alphaproteobacteria,3K0M6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1159154_2	1230476.C207_06919	1.584e-250	777.0	COG2271@1|root,COG2271@2|Bacteria,1QVY6@1224|Proteobacteria,2TVPK@28211|Alphaproteobacteria,3JSM7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	MA20_09740	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1159154_3	1297865.APJD01000024_gene406	7.23e-94	312.0	COG1846@1|root,COG1846@2|Bacteria,1R3ZX@1224|Proteobacteria,2TR9P@28211|Alphaproteobacteria,3K3C6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_1159154_0	1297865.APJD01000024_gene405	0.0	1025.0	COG3203@1|root,COG3203@2|Bacteria,1MXN6@1224|Proteobacteria,2TSH7@28211|Alphaproteobacteria,3JQSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	ropAch1	-	-	-	-	-	-	-	-	-	-	-	Porin_2
SX3_k127_1160292_4	1230476.C207_03800	1.44e-217	686.0	COG2304@1|root,COG2304@2|Bacteria,1N2UU@1224|Proteobacteria,2TYMP@28211|Alphaproteobacteria,3JUCA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	von Willebrand factor type A domain	-	-	-	-	-	-	-	-	-	-	-	-	VWA,VWA_2
SX3_k127_1160292_10	1297865.APJD01000035_gene5465	2.108e-99	324.0	COG5321@1|root,COG5321@2|Bacteria,1RDXW@1224|Proteobacteria,2U73Y@28211|Alphaproteobacteria,3JQPD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DNA repair protein MmcB-like	MA20_23405	-	-	-	-	-	-	-	-	-	-	-	MmcB-like
SX3_k127_1160292_8	1297865.APJD01000035_gene5466	2.865e-117	383.0	COG4567@1|root,COG4567@2|Bacteria,1RD7J@1224|Proteobacteria,2TSK7@28211|Alphaproteobacteria,3JTE4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Bacterial regulatory protein, Fis family	actR	-	-	ko:K15012	ko02020,map02020	M00523	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg
SX3_k127_1160292_2	1297865.APJD01000035_gene5467	1.357e-282	869.0	COG0642@1|root,COG2205@2|Bacteria,1QV2U@1224|Proteobacteria,2TW9G@28211|Alphaproteobacteria,3JU8Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	regB	-	2.7.13.3	ko:K15011	ko02020,map02020	M00523	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA
SX3_k127_1160292_6	1230476.C207_03796	9.283e-166	523.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TSC5@28211|Alphaproteobacteria,3JQYP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ATPases associated with a variety of cellular activities	MA20_23390	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
SX3_k127_1160292_5	1297865.APJD01000035_gene5469	1.908e-167	537.0	COG0842@1|root,COG0842@2|Bacteria,1MUF4@1224|Proteobacteria,2TRTS@28211|Alphaproteobacteria,3JSW7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	transport, permease protein	MA20_23385	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
SX3_k127_1160292_1	1297865.APJD01000035_gene5470	1.237e-299	923.0	COG4553@1|root,COG4553@2|Bacteria,1MVUH@1224|Proteobacteria,2TQXW@28211|Alphaproteobacteria,3JTT6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	PHB de-polymerase C-terminus	phaZ	-	3.1.1.75	ko:K05973	ko00650,map00650	-	R05118	-	ko00000,ko00001,ko01000	-	-	-	PHB_depo_C
SX3_k127_1160292_7	224911.27349159	3.249e-163	516.0	COG1451@1|root,COG1451@2|Bacteria,1MXZU@1224|Proteobacteria,2U1JG@28211|Alphaproteobacteria,3JSR0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function DUF45	MA20_23375	-	-	ko:K07043	-	-	-	-	ko00000	-	-	-	DUF45
SX3_k127_1160292_11	224911.27348962	1.373e-06	57.0	COG2050@1|root,COG2050@2|Bacteria,1R5RX@1224|Proteobacteria,2U1DZ@28211|Alphaproteobacteria,3JVKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase-like superfamily	MA20_24410	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
SX3_k127_1160292_0	1297865.APJD01000035_gene5472	0.0	1475.0	COG0744@1|root,COG0744@2|Bacteria,1QTST@1224|Proteobacteria,2TQQ8@28211|Alphaproteobacteria,3JR5K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-binding Protein	pbpC	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	Transgly,Transpeptidase
SX3_k127_1160292_9	1297865.APJD01000035_gene5473	3.592e-100	326.0	COG5470@1|root,COG5470@2|Bacteria,1MWI7@1224|Proteobacteria,2U0S6@28211|Alphaproteobacteria,3JYCC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1330)	MA20_23360	-	-	-	-	-	-	-	-	-	-	-	DUF1330
SX3_k127_1160292_3	1297865.APJD01000035_gene5474	4.261e-270	832.0	COG0683@1|root,COG0683@2|Bacteria,1MU4V@1224|Proteobacteria,2TV7X@28211|Alphaproteobacteria,3JQUF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1168541_1	1297865.APJD01000003_gene6276	7.987e-242	746.0	COG1523@1|root,COG1523@2|Bacteria,1MU19@1224|Proteobacteria,2TRVS@28211|Alphaproteobacteria,3JR1B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the glycosyl hydrolase 13 family	glgX	-	3.2.1.196,3.2.1.68	ko:K01214,ko:K02438	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R02111,R09995,R11261	-	ko00000,ko00001,ko00002,ko01000	-	CBM48,GH13	-	Alpha-amylase,CBM_48
SX3_k127_1168541_0	1297865.APJD01000003_gene6275	0.0	1204.0	COG3284@1|root,COG3284@2|Bacteria,1NRG5@1224|Proteobacteria,2TR0H@28211|Alphaproteobacteria,3JS68@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KQ	Sigma-54 interaction domain	MA20_04760	-	-	ko:K21405	-	-	-	-	ko00000,ko03000	-	-	-	GAF,HTH_8,Sigma54_activat
SX3_k127_1168541_3	1297865.APJD01000003_gene6274	5.93e-126	405.0	COG0428@1|root,COG0428@2|Bacteria,1R76P@1224|Proteobacteria,2U2BE@28211|Alphaproteobacteria,3JUKQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	transporter	-	-	-	ko:K07238	-	-	-	-	ko00000,ko02000	2.A.5.5	-	-	-
SX3_k127_1168541_4	1297865.APJD01000003_gene6273	3.47e-117	377.0	COG1853@1|root,COG1853@2|Bacteria,1NESS@1224|Proteobacteria,2U10U@28211|Alphaproteobacteria,3JVHP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	MA20_04755	-	1.16.8.1,1.5.1.36	ko:K00484,ko:K09024,ko:K13786	ko00240,ko00350,ko00740,ko00860,ko01100,ko01120,ko01220,map00240,map00350,map00740,map00860,map01100,map01120,map01220	-	R02698,R03299,R05218,R05705,R09748,R09750,R09936	RC00046,RC00126,RC01010,RC02732	ko00000,ko00001,ko01000	-	-	-	Flavin_Reduct
SX3_k127_1168541_2	1297865.APJD01000003_gene6272	1.554e-233	721.0	COG2141@1|root,COG2141@2|Bacteria,1MX64@1224|Proteobacteria,2TT8C@28211|Alphaproteobacteria,3JSF0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_04750	-	1.14.13.162	ko:K21731	-	-	-	-	ko00000,ko01000	-	-	-	Bac_luciferase
SX3_k127_117372_4	1297865.APJD01000011_gene6614	3.133e-234	725.0	COG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,2TU1G@28211|Alphaproteobacteria,3JU3K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	alcohol dehydrogenase	adh	-	1.1.1.1,1.1.1.284	ko:K00001,ko:K00121	ko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_117372_0	1297865.APJD01000011_gene6613	0.0	1203.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQU2@28211|Alphaproteobacteria,3JUAT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	MA20_19255	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M
SX3_k127_117372_8	1297865.APJD01000011_gene6612	5.6e-144	460.0	COG1028@1|root,COG1028@2|Bacteria,1MWJQ@1224|Proteobacteria,2TSQ1@28211|Alphaproteobacteria,3JRBU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_19265	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
SX3_k127_117372_7	1297865.APJD01000011_gene6611	3.893e-172	541.0	COG1024@1|root,COG1024@2|Bacteria,1MWF6@1224|Proteobacteria,2TTQ1@28211|Alphaproteobacteria,3JT0H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_19270	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_117372_9	1297865.APJD01000011_gene6610	6.788e-128	410.0	COG0454@1|root,COG0456@2|Bacteria,1QAZR@1224|Proteobacteria,2TVHS@28211|Alphaproteobacteria,3JTNT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) family	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_3
SX3_k127_117372_10	1297865.APJD01000011_gene6609	1.115e-41	153.0	COG5457@1|root,COG5457@2|Bacteria,1NEF1@1224|Proteobacteria,2UD9T@28211|Alphaproteobacteria,3K0CX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1127)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1127
SX3_k127_117372_6	172088.AUGA01000001_gene6713	8.013e-187	585.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,3JRI1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	MA20_19295	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_117372_2	1297865.APJD01000011_gene6607	4.057e-282	871.0	COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,2TQVP@28211|Alphaproteobacteria,3JU2J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	citA	-	-	ko:K03288	-	-	-	-	ko00000,ko02000	2.A.1.6.1,2.A.1.6.7	-	-	MFS_1,Sugar_tr
SX3_k127_117372_1	1297865.APJD01000011_gene6606	1.288e-305	939.0	COG1053@1|root,COG1053@2|Bacteria,1MX5A@1224|Proteobacteria,2TV7T@28211|Alphaproteobacteria,3JQYS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD dependent oxidoreductase	cobZ	-	-	ko:K13796	-	-	-	-	ko00000	-	-	-	FAD_binding_2
SX3_k127_117372_5	1297865.APJD01000011_gene6605	8.944e-228	716.0	COG0400@1|root,COG0400@2|Bacteria,1NXXX@1224|Proteobacteria,2UW6X@28211|Alphaproteobacteria,3JX5B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_117372_3	1297865.APJD01000011_gene6604	4.123e-239	739.0	COG1149@1|root,COG1149@2|Bacteria,1QTYV@1224|Proteobacteria,2TTH3@28211|Alphaproteobacteria,3JV8K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	TIGRFAM CitB domain protein	tcuB	-	-	ko:K13795	-	-	-	-	ko00000	-	-	-	-
SX3_k127_1176083_14	1297865.APJD01000075_gene2642	2.262e-20	90.0	COG2826@1|root,COG2826@2|Bacteria,1PP49@1224|Proteobacteria,2TRVA@28211|Alphaproteobacteria,3JZ7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_38,rve
SX3_k127_1176083_2	1297865.APJD01000019_gene3083	5.921e-209	650.0	COG1072@1|root,COG1072@2|Bacteria,1MV3M@1224|Proteobacteria,2TS7E@28211|Alphaproteobacteria,3JRQJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Pantothenic acid kinase	coaA	GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.1.33	ko:K00867	ko00770,ko01100,map00770,map01100	M00120	R02971,R03018,R04391	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PRK
SX3_k127_1176083_12	1297865.APJD01000019_gene3084	4.323e-59	205.0	COG0140@1|root,COG0140@2|Bacteria,1MZEE@1224|Proteobacteria,2UBU3@28211|Alphaproteobacteria,3JZNP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	phosphoribosyl-ATP diphosphatase activity	hisE	-	3.6.1.31	ko:K01523	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04035	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	PRA-PH
SX3_k127_1176083_3	1297865.APJD01000019_gene3085	1.658e-164	518.0	COG0107@1|root,COG0107@2|Bacteria,1MUS0@1224|Proteobacteria,2TQXD@28211|Alphaproteobacteria,3JTPS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit	hisF	GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763	-	ko:K02500	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04558	RC00010,RC01190,RC01943	ko00000,ko00001,ko00002,ko01000	-	-	-	His_biosynth
SX3_k127_1176083_4	1297865.APJD01000019_gene3086	2.761e-151	484.0	COG0106@1|root,COG0106@2|Bacteria,1MW6S@1224|Proteobacteria,2TRSG@28211|Alphaproteobacteria,3JQMK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase	hisA	GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.3.1.16	ko:K01814	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04640	RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	His_biosynth
SX3_k127_1176083_13	1123240.ATVO01000004_gene1221	5.938e-52	194.0	COG0118@1|root,COG0118@2|Bacteria,1MU4X@1224|Proteobacteria,2TTT4@28211|Alphaproteobacteria,2K223@204457|Sphingomonadales	204457|Sphingomonadales	E	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR	hisH	-	-	ko:K02501	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04558	RC00010,RC01190,RC01943	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase
SX3_k127_1176083_9	1297865.APJD01000019_gene3088	8.962e-110	355.0	2BXM2@1|root,331PK@2|Bacteria,1MUGN@1224|Proteobacteria,2UFNI@28211|Alphaproteobacteria,3JW9M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2628)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2628
SX3_k127_1176083_5	1297865.APJD01000019_gene3089	1.6e-124	400.0	COG0131@1|root,COG0131@2|Bacteria,1MWBS@1224|Proteobacteria,2TTVV@28211|Alphaproteobacteria,3JU1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	imidazoleglycerol-phosphate dehydratase	hisB	GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.6.1.9,3.1.3.15,4.2.1.19	ko:K00817,ko:K01089,ko:K01693	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	M00026	R00694,R00734,R03013,R03243,R03457	RC00006,RC00017,RC00888,RC00932	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	IGPD
SX3_k127_1176083_8	1297865.APJD01000019_gene3090	1.709e-112	363.0	COG5405@1|root,COG5405@2|Bacteria,1MVF2@1224|Proteobacteria,2TRRE@28211|Alphaproteobacteria,3JRD8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery	hslV	-	3.4.25.2	ko:K01419	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Proteasome
SX3_k127_1176083_10	1297865.APJD01000019_gene3091	1.196e-104	342.0	COG1670@1|root,COG1670@2|Bacteria,1R4VC@1224|Proteobacteria,2UEQW@28211|Alphaproteobacteria,3JVY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Siderophore biosynthesis protein domain	-	-	2.3.1.82	ko:K00663	-	-	-	-	ko00000,ko01000,ko01504	-	-	-	Acetyltransf_8
SX3_k127_1176083_6	1297865.APJD01000019_gene3092	1.542e-123	400.0	29CWT@1|root,2ZZUX@2|Bacteria,1REF2@1224|Proteobacteria,2U7K7@28211|Alphaproteobacteria,3JSSE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2585)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2585
SX3_k127_1176083_0	1297865.APJD01000019_gene3093	3.428e-269	830.0	COG1220@1|root,COG1220@2|Bacteria,1MVK9@1224|Proteobacteria,2TRXC@28211|Alphaproteobacteria,3JT4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis	hslU	-	-	ko:K03667	-	-	-	-	ko00000,ko03110	-	-	-	AAA_2,ClpB_D2-small
SX3_k127_1176083_1	1297865.APJD01000019_gene3094	5.873e-239	741.0	2EGQS@1|root,33AGX@2|Bacteria,1N4DX@1224|Proteobacteria,2TTB0@28211|Alphaproteobacteria,3JUA4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1176083_7	1297865.APJD01000019_gene3095	2.97e-115	379.0	COG2840@1|root,COG2840@2|Bacteria,1RH34@1224|Proteobacteria,2UCM1@28211|Alphaproteobacteria,3JWQZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Smr domain	smrA	-	-	-	-	-	-	-	-	-	-	-	Smr
SX3_k127_1176083_11	1297865.APJD01000019_gene3096	3.43e-64	220.0	COG2821@1|root,COG2821@2|Bacteria,1MXD4@1224|Proteobacteria,2TS5S@28211|Alphaproteobacteria,3JTB1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	MltA specific insert domain	mltA	-	-	ko:K08304	-	-	-	-	ko00000,ko01000,ko01011	-	GH102	-	3D,MltA
SX3_k127_1181097_20	1297865.APJD01000001_gene5993	6.769e-11	62.0	COG0745@1|root,COG3920@1|root,COG0745@2|Bacteria,COG3920@2|Bacteria,1MVPJ@1224|Proteobacteria,2TSSQ@28211|Alphaproteobacteria,3JRJU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase-like ATPase domain	fsrR	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HATPase_c_2,HisKA_2,Response_reg
SX3_k127_1181097_11	1297865.APJD01000001_gene5994	2.224e-151	480.0	2A5XG@1|root,30UPH@2|Bacteria,1R4CI@1224|Proteobacteria,2TSS2@28211|Alphaproteobacteria,3JVUC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1181097_18	1297865.APJD01000001_gene5995	1.012e-67	231.0	2A96K@1|root,30YB8@2|Bacteria,1RIA7@1224|Proteobacteria,2UABI@28211|Alphaproteobacteria,3JZME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	BA14K
SX3_k127_1181097_19	1297865.APJD01000001_gene5996	4.335e-56	206.0	293I8@1|root,32HPF@2|Bacteria,1RK13@1224|Proteobacteria,2UBKH@28211|Alphaproteobacteria,3JZYW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1181097_3	1297865.APJD01000001_gene5997	1.176e-295	910.0	COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2TSN8@28211|Alphaproteobacteria,3JQRY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	OEP
SX3_k127_1181097_0	1297865.APJD01000001_gene5998	0.0	2058.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JRBW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	AcrB/AcrD/AcrF family	-	-	-	ko:K07789	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
SX3_k127_1181097_1	1297865.APJD01000001_gene5999	0.0	1947.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JSVA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K07788	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
SX3_k127_1181097_4	1297865.APJD01000001_gene6000	6.228e-257	796.0	COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,2TSB6@28211|Alphaproteobacteria,3JWP5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Biotin-lipoyl like	-	-	-	ko:K07799,ko:K18990	ko02020,map02020	M00648,M00720	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2.30,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_1181097_2	1297865.APJD01000001_gene6001	3.084e-302	929.0	COG0471@1|root,COG0471@2|Bacteria,1MUSA@1224|Proteobacteria,2TU0C@28211|Alphaproteobacteria,3JRI4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sodium:sulfate symporter transmembrane region	-	-	-	ko:K03319,ko:K09477,ko:K11106,ko:K14445	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.47,2.A.47.1,2.A.47.3.2,2.A.47.3.3	-	-	Na_sulph_symp
SX3_k127_1181097_12	1297865.APJD01000001_gene6002	6.975e-146	463.0	COG2360@1|root,COG2360@2|Bacteria,1R9W8@1224|Proteobacteria,2U59K@28211|Alphaproteobacteria,3JUI9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine	aat	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008914,GO:0016740,GO:0016746,GO:0016755,GO:0044424,GO:0044464,GO:0140096	2.3.2.6	ko:K00684	-	-	R03813,R11443,R11444	RC00055,RC00064	ko00000,ko01000	-	-	-	Leu_Phe_trans
SX3_k127_1181097_7	1297865.APJD01000001_gene6003	2.989e-199	623.0	COG4765@1|root,COG4765@2|Bacteria,1RHI7@1224|Proteobacteria,2UBR9@28211|Alphaproteobacteria,3JR7X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2155)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2155
SX3_k127_1181097_10	1297865.APJD01000001_gene6004	1.381e-151	494.0	COG1028@1|root,COG1028@2|Bacteria,1MUFX@1224|Proteobacteria,2TVKK@28211|Alphaproteobacteria,3JSD2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_1181097_6	1297865.APJD01000001_gene6005	1.676e-205	640.0	COG0657@1|root,COG0657@2|Bacteria,1NEXK@1224|Proteobacteria,2U5X1@28211|Alphaproteobacteria,3JSH0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Carboxylesterase family	-	-	-	ko:K01066	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_3
SX3_k127_1181097_5	1297865.APJD01000001_gene6006	1.231e-255	790.0	COG1055@1|root,COG1055@2|Bacteria,1MUH8@1224|Proteobacteria,2U0BW@28211|Alphaproteobacteria,3JU7T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sodium proton antiporter, NhaD family	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1181097_8	1297865.APJD01000001_gene6007	2.193e-198	619.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,2TS7I@28211|Alphaproteobacteria,3JSNX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_29105	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI,HTH_18
SX3_k127_1181097_13	1297865.APJD01000001_gene6008	1.756e-145	462.0	COG0693@1|root,COG0693@2|Bacteria,1N8N6@1224|Proteobacteria,2TT0U@28211|Alphaproteobacteria,3JTZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DJ-1/PfpI family	MA20_29100	-	4.2.1.103	ko:K18199	ko00930,map00930	-	R05771	RC01467	ko00000,ko00001,ko01000,ko01002	-	-	-	DJ-1_PfpI
SX3_k127_1181097_15	1297865.APJD01000001_gene6009	2.151e-93	308.0	COG3761@1|root,COG3761@2|Bacteria,1RHS3@1224|Proteobacteria,2U95G@28211|Alphaproteobacteria,3JYGF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH ubiquinone oxidoreductase subunit NDUFA12	MA20_29090	-	1.6.99.3	ko:K00356	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	NDUFA12
SX3_k127_1181097_16	1297865.APJD01000001_gene6010	1.718e-91	303.0	2E9ZT@1|root,33457@2|Bacteria,1RC3E@1224|Proteobacteria,2U4S1@28211|Alphaproteobacteria,3JV9I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	BA14K-like protein	-	-	-	-	-	-	-	-	-	-	-	-	BA14K
SX3_k127_1181097_9	1297865.APJD01000001_gene6011	7.348e-176	557.0	COG0697@1|root,COG0697@2|Bacteria,1NEYM@1224|Proteobacteria,2TX6U@28211|Alphaproteobacteria,3JU0M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_1181097_17	1297865.APJD01000001_gene6012	1.081e-80	270.0	COG0745@1|root,COG0745@2|Bacteria,1N9SP@1224|Proteobacteria,2U6CP@28211|Alphaproteobacteria,3JY7U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	cheY-homologous receiver domain	MA20_29080	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_1181097_14	1297865.APJD01000001_gene6013	7e-113	366.0	COG0784@1|root,COG4191@1|root,COG5278@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,COG5278@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JUCI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	CHASE3 domain	-	-	-	-	-	-	-	-	-	-	-	-	CHASE3,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_8,Response_reg
SX3_k127_1189240_5	883080.HMPREF9697_03933	3.135e-112	368.0	28M6F@1|root,2ZAK3@2|Bacteria,1QRV5@1224|Proteobacteria,2TTG0@28211|Alphaproteobacteria,3JWMJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1189240_2	323097.Nham_4483	1.752e-187	595.0	COG4227@1|root,COG4227@2|Bacteria,1MU8I@1224|Proteobacteria,2TRIT@28211|Alphaproteobacteria,3JR5I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Domain of unknown function (DUF1738)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1738
SX3_k127_1189240_13	883080.HMPREF9697_03940	8.247e-06	51.0	COG5489@1|root,COG5489@2|Bacteria,1RDVU@1224|Proteobacteria,2U98G@28211|Alphaproteobacteria,3JZBA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_1189240_3	288000.BBta_1469	1.005e-161	523.0	COG4974@1|root,COG4974@2|Bacteria,1RBKD@1224|Proteobacteria,2U2W3@28211|Alphaproteobacteria,3K5HY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_1,Phage_integrase
SX3_k127_1189240_9	288000.BBta_1470	3.122e-31	129.0	COG0582@1|root,COG0582@2|Bacteria,1R69Y@1224|Proteobacteria,2U478@28211|Alphaproteobacteria,3K1IG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	to previously reported genes of	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1189240_4	13689.BV96_03845	1.07e-123	409.0	COG0582@1|root,COG0582@2|Bacteria,1R69Y@1224|Proteobacteria,2U478@28211|Alphaproteobacteria,2K970@204457|Sphingomonadales	204457|Sphingomonadales	L	to previously reported genes of	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1189240_1	288000.BBta_1471	4.649e-212	676.0	COG0582@1|root,COG0582@2|Bacteria,1R9AB@1224|Proteobacteria,2U537@28211|Alphaproteobacteria,3K1PW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1189240_10	288000.BBta_1472	3.861e-25	112.0	2C8VX@1|root,2ZKNX@2|Bacteria,1NNBJ@1224|Proteobacteria,2UN5R@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	to previously reported genes of	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1189240_7	376733.IT41_15705	3.774e-52	195.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TU0K@28211|Alphaproteobacteria,2PY62@265|Paracoccus	28211|Alphaproteobacteria	C	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family	-	-	-	-	-	-	-	-	-	-	-	-	MerB,Pyr_redox_2,Pyr_redox_dim
SX3_k127_1189240_0	504832.OCAR_7751	3.805e-260	808.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TU0K@28211|Alphaproteobacteria,3JWEP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family	merA	-	1.16.1.1	ko:K00520	-	-	-	-	ko00000,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_dim
SX3_k127_1189240_14	1429916.X566_09360	2.064e-05	51.0	2E3VI@1|root,32YSQ@2|Bacteria,1N7PI@1224|Proteobacteria,2UF8H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Membrane transport protein MerF	-	-	-	ko:K19058	-	-	-	-	ko00000,ko02000	1.A.72.4	-	-	MerT,Transport_MerF
SX3_k127_1189240_11	1417296.U879_05390	9.674e-25	106.0	COG2608@1|root,COG2608@2|Bacteria,1NAZ1@1224|Proteobacteria,2UGB0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	mercury ion transmembrane transporter activity	-	-	-	ko:K08364	-	-	-	-	ko00000,ko02000	1.A.72.1	-	-	HMA
SX3_k127_1189240_8	666684.AfiDRAFT_1019	6.392e-45	167.0	COG2608@1|root,COG2608@2|Bacteria,1RDCB@1224|Proteobacteria,2UCEK@28211|Alphaproteobacteria,3K0GV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	MerT mercuric transport protein	-	-	-	ko:K08363	-	-	-	-	ko00000,ko02000	1.A.72.1	-	-	MerT
SX3_k127_1189240_6	1437448.AZRT01000127_gene284	2.108e-69	239.0	COG0789@1|root,COG0789@2|Bacteria,1MZ3P@1224|Proteobacteria,2UC95@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	ko:K08365	-	-	-	-	ko00000,ko03000	-	-	-	MerR,MerR-DNA-bind,MerR_1
SX3_k127_1189240_12	318996.AXAZ01000018_gene1050	6.504e-14	70.0	COG3335@1|root,COG3335@2|Bacteria,1MZ39@1224|Proteobacteria,2UCFH@28211|Alphaproteobacteria,3K69M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DDE superfamily endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	DDE_3
SX3_k127_1199876_1	1297865.APJD01000035_gene5495	7.407e-199	620.0	COG0697@1|root,COG0697@2|Bacteria,1R6KH@1224|Proteobacteria,2TTBR@28211|Alphaproteobacteria,3JWIF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_23245	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_1199876_2	1297865.APJD01000035_gene5494	1.42e-102	336.0	COG0735@1|root,COG0735@2|Bacteria,1MZIW@1224|Proteobacteria,2U9G4@28211|Alphaproteobacteria,3JS2Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the Fur family	MA20_23250	-	-	ko:K09823	ko02024,map02024	-	-	-	ko00000,ko00001,ko03000	-	-	-	FUR
SX3_k127_1199876_4	652103.Rpdx1_0547	2.189e-58	207.0	COG1846@1|root,COG1846@2|Bacteria,1MZY5@1224|Proteobacteria,2U9EE@28211|Alphaproteobacteria,3JSF5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	MarR family	MA20_23255	-	-	ko:K06075	-	-	-	-	ko00000,ko03000	-	-	-	MarR,MarR_2
SX3_k127_1199876_0	1297865.APJD01000035_gene5492	4.122e-251	779.0	COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,2TS39@28211|Alphaproteobacteria,3JS8W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	HlyD membrane-fusion protein of T1SS	-	-	-	ko:K03543	-	M00701	-	-	ko00000,ko00002,ko02000	8.A.1.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_1199876_3	1230476.C207_03767	4.299e-83	276.0	COG0477@1|root,COG0477@2|Bacteria,1RGPN@1224|Proteobacteria,2TQKW@28211|Alphaproteobacteria,3JS9D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	MFS/sugar transport protein	MA20_23265	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
SX3_k127_1205324_30	1297865.APJD01000026_gene2528	6.91e-77	257.0	COG3173@1|root,COG3173@2|Bacteria,1MWAK@1224|Proteobacteria,2TT2N@28211|Alphaproteobacteria,3JV5A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ecdysteroid kinase	-	-	-	-	-	-	-	-	-	-	-	-	APH
SX3_k127_1205324_26	1297865.APJD01000026_gene2527	1.522e-144	462.0	COG0778@1|root,COG0778@2|Bacteria,1PG8V@1224|Proteobacteria,2U6HW@28211|Alphaproteobacteria,3K3RV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase family	-	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
SX3_k127_1205324_8	1297865.APJD01000026_gene2526	9.643e-248	765.0	COG1804@1|root,COG1804@2|Bacteria,1MW1H@1224|Proteobacteria,2TR7D@28211|Alphaproteobacteria,3JUQ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	5.1.99.4	ko:K01796	ko00120,ko01100,ko04146,map00120,map01100,map04146	M00104	R08734,R08739	RC02345	ko00000,ko00001,ko00002,ko01000	-	-	-	CoA_transf_3
SX3_k127_1205324_25	1297865.APJD01000026_gene2525	1.086e-149	474.0	COG1028@1|root,COG1028@2|Bacteria,1MXQR@1224|Proteobacteria,2TW65@28211|Alphaproteobacteria,3JVTV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	NAD dependent epimerase/dehydratase family	MA20_09905	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_1205324_12	1297865.APJD01000026_gene2524	1.557e-221	689.0	COG1609@1|root,COG1609@2|Bacteria,1MVUR@1224|Proteobacteria,2TUPD@28211|Alphaproteobacteria,3JRS8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn _helix lactose operon repressor	-	-	-	ko:K02529,ko:K06145	-	-	-	-	ko00000,ko03000	-	-	-	LacI,Peripla_BP_3
SX3_k127_1205324_6	1297865.APJD01000026_gene2523	8.705e-283	870.0	COG1653@1|root,COG1653@2|Bacteria,1MUNZ@1224|Proteobacteria,2U05K@28211|Alphaproteobacteria,3JWRT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_1,SBP_bac_8
SX3_k127_1205324_19	1297865.APJD01000026_gene2522	2.716e-185	581.0	COG1175@1|root,COG1175@2|Bacteria,1MWB7@1224|Proteobacteria,2TQZY@28211|Alphaproteobacteria,3JSZ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02025	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_1205324_23	1297865.APJD01000026_gene2521	5.591e-169	533.0	COG0395@1|root,COG0395@2|Bacteria,1MXTE@1224|Proteobacteria,2U09S@28211|Alphaproteobacteria,3JU5C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_1205324_14	1297865.APJD01000026_gene2520	7.506e-217	673.0	COG1063@1|root,COG1063@2|Bacteria,1MWX0@1224|Proteobacteria,2TU6B@28211|Alphaproteobacteria,3JQMN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Alcohol dehydrogenase GroES-like domain	-	-	1.1.1.14	ko:K00008	ko00040,ko00051,ko01100,map00040,map00051,map01100	M00014	R00875,R01896	RC00085,RC00102	ko00000,ko00001,ko00002,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_1205324_9	1297865.APJD01000026_gene2519	3.946e-230	713.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,3JSZ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	TOBE domain	-	-	-	ko:K10112	ko02010,map02010	M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1	-	-	ABC_tran,TOBE,TOBE_2
SX3_k127_1205324_17	1297865.APJD01000026_gene2518	1.623e-200	632.0	COG0524@1|root,COG0524@2|Bacteria,1MWX4@1224|Proteobacteria,2VF16@28211|Alphaproteobacteria,3JV89@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the carbohydrate kinase PfkB family	-	-	2.7.1.184	ko:K18478	-	-	R10970	RC00002,RC00017	ko00000,ko01000	-	-	-	PfkB
SX3_k127_1205324_10	1297865.APJD01000026_gene2517	2.573e-226	704.0	COG3684@1|root,COG3684@2|Bacteria,1QZI3@1224|Proteobacteria,2U07T@28211|Alphaproteobacteria,3JRZZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	DeoC/LacD family aldolase	MA20_09915	-	4.1.2.40,4.1.2.57	ko:K01635,ko:K01671	ko00052,ko01100,ko02024,map00052,map01100,map02024	-	R01069,R10760	RC00438,RC00439	ko00000,ko00001,ko01000	-	-	-	DeoC
SX3_k127_1205324_11	1230476.C207_01045	7.664e-223	691.0	COG1638@1|root,COG1638@2|Bacteria,1MWXG@1224|Proteobacteria,2U10G@28211|Alphaproteobacteria,3JSRE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	MA20_29430	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_1205324_2	1297865.APJD01000026_gene2515	0.0	1185.0	COG1593@1|root,COG3090@1|root,COG1593@2|Bacteria,COG3090@2|Bacteria,1MU0F@1224|Proteobacteria,2TSEZ@28211|Alphaproteobacteria,3JSEF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporters, DctQ component	MA20_29425	-	-	-	-	-	-	-	-	-	-	-	DctM,DctQ
SX3_k127_1205324_3	1297865.APJD01000026_gene2514	0.0	1134.0	COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2TR96@28211|Alphaproteobacteria,3JR8T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_29420	-	6.2.1.48	ko:K00666,ko:K02182	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_1205324_33	1121861.KB899911_gene1270	1.928e-27	117.0	COG1846@1|root,COG1846@2|Bacteria,1N0MG@1224|Proteobacteria,2UDDI@28211|Alphaproteobacteria,2JTF7@204441|Rhodospirillales	204441|Rhodospirillales	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_1205324_24	1297865.APJD01000026_gene2512	1.189e-162	512.0	COG0778@1|root,COG0778@2|Bacteria,1Q7UM@1224|Proteobacteria,2VDZM@28211|Alphaproteobacteria,3JX3R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase family	-	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
SX3_k127_1205324_21	1297865.APJD01000026_gene2511	5.339e-177	557.0	COG1235@1|root,COG1235@2|Bacteria,1MVJH@1224|Proteobacteria,2TQQN@28211|Alphaproteobacteria,3JRCY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Beta-lactamase superfamily domain	phnP	-	3.1.4.55	ko:K06167	ko00440,map00440	-	R10205	RC00296	ko00000,ko00001,ko01000	-	-	-	Lactamase_B_2
SX3_k127_1205324_22	1297865.APJD01000026_gene2510	7.472e-170	536.0	COG0084@1|root,COG0084@2|Bacteria,1MUC0@1224|Proteobacteria,2TS88@28211|Alphaproteobacteria,3JTFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	TatD related DNase	MA20_29410	-	-	ko:K03424	-	-	-	-	ko00000,ko01000	-	-	-	TatD_DNase
SX3_k127_1205324_1	1297865.APJD01000026_gene2509	0.0	1287.0	COG0143@1|root,COG0143@2|Bacteria,1MUBY@1224|Proteobacteria,2TQKA@28211|Alphaproteobacteria,3JS60@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation	metG	-	6.1.1.10	ko:K01874	ko00450,ko00970,map00450,map00970	M00359,M00360	R03659,R04773	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,tRNA-synt_1g
SX3_k127_1205324_13	1297865.APJD01000026_gene2508	5.609e-218	679.0	COG0470@1|root,COG0470@2|Bacteria,1MY1W@1224|Proteobacteria,2TV3E@28211|Alphaproteobacteria,3JRBI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase III delta prime subunit	holB	-	2.7.7.7	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta2
SX3_k127_1205324_27	1297865.APJD01000026_gene2507	1.242e-141	454.0	COG0125@1|root,COG0125@2|Bacteria,1MV9C@1224|Proteobacteria,2U72D@28211|Alphaproteobacteria,3JQP0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis	tmk	GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.4.9	ko:K00943	ko00240,ko01100,map00240,map01100	M00053	R02094,R02098	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Thymidylate_kin
SX3_k127_1205324_7	1297865.APJD01000026_gene2506	3.099e-270	834.0	COG1686@1|root,COG1686@2|Bacteria,1MUU7@1224|Proteobacteria,2TS1P@28211|Alphaproteobacteria,3JSWY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the peptidase S11 family	dacC	-	3.4.16.4	ko:K07258	ko00550,ko01100,map00550,map01100	-	-	-	ko00000,ko00001,ko01000,ko01002,ko01011	-	-	-	PBP5_C,Peptidase_S11
SX3_k127_1205324_16	1297865.APJD01000026_gene2505	3.265e-209	651.0	COG0596@1|root,COG0596@2|Bacteria,1N5ZI@1224|Proteobacteria,2TS7X@28211|Alphaproteobacteria,3JQMA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	MA20_29380	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_1205324_18	1297865.APJD01000026_gene2504	4.491e-190	595.0	COG0797@1|root,COG0797@2|Bacteria,1MZ8S@1224|Proteobacteria,2TUER@28211|Alphaproteobacteria,3JUGC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	rlpA	-	-	ko:K03642	-	-	-	-	ko00000	-	-	-	DPBB_1,SPOR
SX3_k127_1205324_38	1297865.APJD01000026_gene2503	7.109e-08	57.0	2AG7V@1|root,316D1@2|Bacteria,1NHBT@1224|Proteobacteria,2UKDT@28211|Alphaproteobacteria,3K1ZT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1205324_37	1230476.C207_01059	3.291e-11	63.0	2AJ3Y@1|root,319NC@2|Bacteria,1NJSG@1224|Proteobacteria,2UJW4@28211|Alphaproteobacteria,3K21A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1205324_31	1230476.C207_01060	2.271e-70	240.0	COG0494@1|root,COG0494@2|Bacteria,1R001@1224|Proteobacteria,2U7WK@28211|Alphaproteobacteria,3JZ9Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	NUDIX domain	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_1205324_29	1297865.APJD01000026_gene2501	1.617e-94	310.0	COG0394@1|root,COG0394@2|Bacteria,1RE6V@1224|Proteobacteria,2U82Y@28211|Alphaproteobacteria,3JZ9H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Low molecular weight phosphatase family	-	-	3.1.3.48	ko:K01104	-	-	-	-	ko00000,ko01000	-	-	-	LMWPc
SX3_k127_1205324_36	1168059.KB899087_gene1061	3.223e-13	70.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,2TRIY@28211|Alphaproteobacteria,3F0VP@335928|Xanthobacteraceae	28211|Alphaproteobacteria	L	Resolvase, N terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
SX3_k127_1205324_15	1297865.APJD01000026_gene2499	4.179e-211	655.0	COG2267@1|root,COG2267@2|Bacteria,1QUW0@1224|Proteobacteria,2TWTR@28211|Alphaproteobacteria,3K712@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Alpha/beta hydrolase family	-	-	3.8.1.5	ko:K01563	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05284,R05367,R05368,R05369,R05370,R07669,R07670	RC01317,RC01340,RC01341,RC02013	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
SX3_k127_1205324_28	1297865.APJD01000026_gene2498	2.008e-95	314.0	COG1733@1|root,COG1733@2|Bacteria,1RIZT@1224|Proteobacteria,2U7SS@28211|Alphaproteobacteria,3JYGD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_1205324_34	398525.KB900701_gene4960	8.485e-25	104.0	2BSRR@1|root,32MUN@2|Bacteria,1N8MG@1224|Proteobacteria,2UFFX@28211|Alphaproteobacteria,3K0VX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1205324_20	1297865.APJD01000026_gene2497	3.256e-179	561.0	COG3570@1|root,COG3570@2|Bacteria,1MW4R@1224|Proteobacteria,2TU3X@28211|Alphaproteobacteria,3JW9A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Aminoglycoside/hydroxyurea antibiotic resistance kinase	str	-	2.7.1.72	ko:K04343	-	M00766	R02225	RC00002,RC00078	br01600,ko00000,ko00002,ko01000,ko01504	-	-	-	APH_6_hur
SX3_k127_1205324_32	1230476.C207_06945	8.786e-49	175.0	29B67@1|root,2ZY4K@2|Bacteria,1RJ4A@1224|Proteobacteria,2U9GH@28211|Alphaproteobacteria,3JZPP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_35995	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1205324_5	1297865.APJD01000026_gene2495	1.357e-305	936.0	COG2133@1|root,COG2133@2|Bacteria,1MVK5@1224|Proteobacteria,2TRN9@28211|Alphaproteobacteria,3JU1E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glucose / Sorbosone dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	GSDH
SX3_k127_1205324_4	1297865.APJD01000026_gene2494	6.383e-321	985.0	COG2202@1|root,COG3437@1|root,COG3920@1|root,COG2202@2|Bacteria,COG3437@2|Bacteria,COG3920@2|Bacteria,1NWNJ@1224|Proteobacteria,2TWQC@28211|Alphaproteobacteria,3JU7K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HWE histidine kinase	MA20_07275	-	-	-	-	-	-	-	-	-	-	-	HWE_HK,PAS_3,PAS_4,PAS_9,Response_reg
SX3_k127_1205324_0	1297865.APJD01000026_gene2493	0.0	2067.0	COG0642@1|root,COG0745@1|root,COG0784@1|root,COG0840@1|root,COG1511@1|root,COG2203@1|root,COG0745@2|Bacteria,COG0784@2|Bacteria,COG0840@2|Bacteria,COG1511@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TWQB@28211|Alphaproteobacteria,3JQWC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Domain present in phytochromes and cGMP-specific phosphodiesterases.	MA20_07280	-	-	-	-	-	-	-	-	-	-	-	GAF_2,HATPase_c,HisKA,Response_reg
SX3_k127_1208876_2	1297865.APJD01000003_gene6421	1.114e-244	758.0	2C10Y@1|root,33VU3@2|Bacteria,1RFVX@1224|Proteobacteria,2U8EA@28211|Alphaproteobacteria,3K2DH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1208876_0	1297865.APJD01000003_gene6420	0.0	1464.0	COG0542@1|root,COG0542@2|Bacteria,1R8ER@1224|Proteobacteria,2TRK5@28211|Alphaproteobacteria,3K3NQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Torsin	-	-	-	-	-	-	-	-	-	-	-	-	AAA_2,ClpB_D2-small
SX3_k127_1208876_9	1197906.CAJQ02000003_gene3219	9.711e-12	65.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,2TRIY@28211|Alphaproteobacteria,3JUGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Resolvase	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
SX3_k127_1208876_7	1297865.APJD01000003_gene6418	4.667e-36	136.0	COG3024@1|root,COG3024@2|Bacteria,1NGJ8@1224|Proteobacteria,2UJJF@28211|Alphaproteobacteria,3K11A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase	yacG	-	-	ko:K09862	-	-	-	-	ko00000	-	-	-	YacG
SX3_k127_1208876_3	1297865.APJD01000003_gene6417	5.447e-129	417.0	COG0424@1|root,COG0424@2|Bacteria,1RH6H@1224|Proteobacteria,2TSS5@28211|Alphaproteobacteria,3JQSH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	nucleoside-triphosphate diphosphatase activity	maf	-	-	ko:K06287	-	-	-	-	ko00000	-	-	-	Maf
SX3_k127_1208876_5	1297865.APJD01000003_gene6416	3.186e-98	321.0	COG0394@1|root,COG0394@2|Bacteria,1RANV@1224|Proteobacteria,2U5EE@28211|Alphaproteobacteria,3JU2V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Low molecular weight phosphotyrosine protein phosphatase	MA20_21085	-	1.20.4.1,3.1.3.48	ko:K01104,ko:K03741	-	-	-	-	ko00000,ko01000	-	-	-	LMWPc
SX3_k127_1208876_4	1297865.APJD01000003_gene6415	1.05e-104	342.0	COG5328@1|root,COG5328@2|Bacteria,1RA93@1224|Proteobacteria,2U741@28211|Alphaproteobacteria,3JTW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0262 family	MA20_21090	-	-	-	-	-	-	-	-	-	-	-	UPF0262
SX3_k127_1208876_1	1297865.APJD01000003_gene6414	7.515e-265	818.0	COG0141@1|root,COG0141@2|Bacteria,1MUUF@1224|Proteobacteria,2TSBN@28211|Alphaproteobacteria,3JR34@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine	hisD	GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.23	ko:K00013	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01158,R01163,R03012	RC00099,RC00242,RC00463	ko00000,ko00001,ko00002,ko01000	-	-	-	Histidinol_dh
SX3_k127_1208876_6	1297865.APJD01000003_gene6413	1.37e-88	295.0	2CN5Z@1|root,32SGB@2|Bacteria,1N1FB@1224|Proteobacteria,2UBV1@28211|Alphaproteobacteria,3JYHB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2948)	MA20_21100	-	-	-	-	-	-	-	-	-	-	-	DUF2948
SX3_k127_1208876_8	1297865.APJD01000014_gene736	2.674e-26	107.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TRUA@28211|Alphaproteobacteria,3JRAQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Function of homologous gene experimentally demonstrated in an other organism	-	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1,Hydrolase_4
SX3_k127_1209214_25	1297865.APJD01000014_gene736	2.674e-26	107.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TRUA@28211|Alphaproteobacteria,3JRAQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Function of homologous gene experimentally demonstrated in an other organism	-	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1,Hydrolase_4
SX3_k127_1209214_14	1297865.APJD01000014_gene735	5.654e-140	448.0	COG1335@1|root,COG1335@2|Bacteria,1MU5N@1224|Proteobacteria,2TU4C@28211|Alphaproteobacteria,3JTBF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
SX3_k127_1209214_23	1297865.APJD01000014_gene734	2.363e-45	176.0	COG4317@1|root,COG4317@2|Bacteria,1N7ZU@1224|Proteobacteria,2UGRZ@28211|Alphaproteobacteria,3K0QZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1427)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1427
SX3_k127_1209214_2	1297865.APJD01000014_gene733	0.0	1307.0	COG1574@1|root,COG1574@2|Bacteria,1MWP2@1224|Proteobacteria,2TT4X@28211|Alphaproteobacteria,3JUZ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_3
SX3_k127_1209214_20	1297865.APJD01000014_gene732	1.028e-87	295.0	COG2259@1|root,COG2259@2|Bacteria,1RHKP@1224|Proteobacteria,2U8R2@28211|Alphaproteobacteria,3JZ2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DoxX	-	-	-	-	-	-	-	-	-	-	-	-	DoxX
SX3_k127_1209214_11	1297865.APJD01000014_gene731	4.26e-192	602.0	COG0346@1|root,COG0346@2|Bacteria,1N1QT@1224|Proteobacteria,2TU6X@28211|Alphaproteobacteria,3JST8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	lactoylglutathione lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1209214_5	1297865.APJD01000014_gene730	5e-324	992.0	28HF6@1|root,2Z7RB@2|Bacteria,1P254@1224|Proteobacteria,2TSDA@28211|Alphaproteobacteria,3JS78@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alginate export	-	-	-	-	-	-	-	-	-	-	-	-	Alginate_exp
SX3_k127_1209214_15	1297865.APJD01000014_gene729	7.568e-130	416.0	COG3619@1|root,COG3619@2|Bacteria,1R5V0@1224|Proteobacteria,2TVAE@28211|Alphaproteobacteria,3JWCU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1275)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1275
SX3_k127_1209214_3	1297865.APJD01000014_gene728	0.0	1007.0	COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2TVDE@28211|Alphaproteobacteria,3JSET@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	OEP
SX3_k127_1209214_7	1297865.APJD01000014_gene726	8.016e-251	777.0	COG0845@1|root,COG0845@2|Bacteria,1QNEF@1224|Proteobacteria,2VF10@28211|Alphaproteobacteria,3K3JB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Biotin-lipoyl like	-	-	-	ko:K15727	-	-	-	-	ko00000,ko02000	8.A.1.2.1	-	-	HlyD_D23
SX3_k127_1209214_0	1297865.APJD01000014_gene725	0.0	2106.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRJE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
SX3_k127_1209214_22	1297865.APJD01000014_gene723	3.689e-62	215.0	2BPKV@1|root,32IDW@2|Bacteria,1P12B@1224|Proteobacteria,2UUJZ@28211|Alphaproteobacteria,3K4XV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1209214_16	1297865.APJD01000014_gene722	4.977e-125	401.0	COG2197@1|root,COG2197@2|Bacteria,1R9ZF@1224|Proteobacteria,2U9TQ@28211|Alphaproteobacteria,3JZEB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_1209214_4	1297865.APJD01000014_gene721	0.0	1004.0	COG0642@1|root,COG2205@2|Bacteria,1R72I@1224|Proteobacteria,2TU7S@28211|Alphaproteobacteria,3K0JD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	4HB_MCP_1,HAMP,HATPase_c,HisKA,PAS_4
SX3_k127_1209214_24	1297865.APJD01000014_gene720	4.214e-45	165.0	COG3750@1|root,COG3750@2|Bacteria,1N27S@1224|Proteobacteria,2UC5V@28211|Alphaproteobacteria,3K0A0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2312)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2312
SX3_k127_1209214_12	1297865.APJD01000014_gene719	7.797e-167	524.0	COG1024@1|root,COG1024@2|Bacteria,1R6CV@1224|Proteobacteria,2TSB3@28211|Alphaproteobacteria,3JZ57@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_1209214_21	1297865.APJD01000014_gene718	3.222e-85	284.0	2A9WP@1|root,30Z4N@2|Bacteria,1RK2B@1224|Proteobacteria,2UAWK@28211|Alphaproteobacteria,3JZXA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1209214_27	1038860.AXAP01000102_gene4499	2.155e-15	78.0	COG5285@1|root,COG5285@2|Bacteria,1R9W1@1224|Proteobacteria,2U5N9@28211|Alphaproteobacteria,3JYDE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phytanoyl-CoA dioxygenase (PhyH)	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
SX3_k127_1209214_6	1297865.APJD01000014_gene717	9.842e-320	981.0	COG1129@1|root,COG1129@2|Bacteria,1MU22@1224|Proteobacteria,2TQJV@28211|Alphaproteobacteria,3JWV0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	ATPases associated with a variety of cellular activities	-	-	3.6.3.17	ko:K10441,ko:K10545	ko02010,map02010	M00212,M00215	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19,3.A.1.2.4	-	-	ABC_tran
SX3_k127_1209214_10	1297865.APJD01000014_gene716	4.782e-194	612.0	COG1172@1|root,COG1172@2|Bacteria,1MX7D@1224|Proteobacteria,2U0D6@28211|Alphaproteobacteria,3JT3E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Branched-chain amino acid transport system / permease component	-	-	-	ko:K10440	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	BPD_transp_2
SX3_k127_1209214_8	1230476.C207_00425	1.705e-242	754.0	COG1879@1|root,COG1879@2|Bacteria,1RDXP@1224|Proteobacteria,2TV3C@28211|Alphaproteobacteria,3JTN5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding protein domain	-	-	-	ko:K10439	ko02010,ko02030,map02010,map02030	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	Peripla_BP_4
SX3_k127_1209214_13	1297865.APJD01000014_gene714	1.456e-164	520.0	COG1349@1|root,COG1349@2|Bacteria,1MY40@1224|Proteobacteria,2U63I@28211|Alphaproteobacteria,3JW45@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DeoR C terminal sensor domain	-	-	-	ko:K11534	-	-	-	-	ko00000,ko03000	-	-	-	DeoRC,HTH_DeoR
SX3_k127_1209214_9	1297865.APJD01000014_gene713	5.033e-222	691.0	COG0274@1|root,COG0274@2|Bacteria,1N8AG@1224|Proteobacteria,2TS26@28211|Alphaproteobacteria,3JRBY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate	deoC	-	4.1.2.4	ko:K01619	ko00030,map00030	-	R01066	RC00436,RC00437	ko00000,ko00001,ko01000	-	-	-	DeoC
SX3_k127_1209214_1	1297865.APJD01000014_gene712	0.0	1579.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JXR9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	aldA	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_1209214_19	1297865.APJD01000014_gene711	1.549e-92	305.0	COG4154@1|root,COG4154@2|Bacteria,1RJ03@1224|Proteobacteria,2U9P9@28211|Alphaproteobacteria,3JXV6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	RbsD / FucU transport protein family	-	-	5.1.3.29	ko:K02431	-	-	R10764	RC00563	ko00000,ko01000	-	-	-	RbsD_FucU
SX3_k127_1209214_17	1297865.APJD01000014_gene710	3.061e-122	394.0	COG0524@1|root,COG0524@2|Bacteria,1MV5B@1224|Proteobacteria,2TSUM@28211|Alphaproteobacteria,3JV0G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway	rbsK	-	2.7.1.15	ko:K00852	ko00030,map00030	-	R01051,R02750	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	PfkB
SX3_k127_1245496_8	272568.GDI3778	3.431e-157	515.0	COG0323@1|root,COG4191@1|root,COG0323@2|Bacteria,COG4191@2|Bacteria,1ND4X@1224|Proteobacteria,2TXKN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	LT	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HATPase_c_3
SX3_k127_1245496_17	1163408.UU9_00575	5.46e-39	150.0	COG3727@1|root,COG3727@2|Bacteria,1RH1C@1224|Proteobacteria,1S2V3@1236|Gammaproteobacteria,1X7MQ@135614|Xanthomonadales	135614|Xanthomonadales	L	May nick specific sequences that contain T G mispairs resulting from m5C-deamination	-	-	-	ko:K07458	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	Vsr
SX3_k127_1245496_5	1297865.APJD01000014_gene960	1.313e-168	530.0	COG3836@1|root,COG3836@2|Bacteria,1MUSG@1224|Proteobacteria,2TVCG@28211|Alphaproteobacteria,3JR17@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	HpcH/HpaI aldolase/citrate lyase family	MA20_09190	-	4.1.2.52	ko:K02510	ko00350,ko01120,map00350,map01120	-	R01645,R01647	RC00307,RC00572,RC00574,RC03057	ko00000,ko00001,ko01000	-	-	-	HpcH_HpaI
SX3_k127_1245496_6	1297865.APJD01000014_gene959	1.042e-164	519.0	COG0796@1|root,COG0796@2|Bacteria,1NAI2@1224|Proteobacteria,2TSR7@28211|Alphaproteobacteria,3JRJY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Provides the (R)-glutamate required for cell wall biosynthesis	murI	-	5.1.1.3	ko:K01776	ko00471,ko01100,map00471,map01100	-	R00260	RC00302	ko00000,ko00001,ko01000,ko01011	-	-	-	Asp_Glu_race
SX3_k127_1245496_13	1297865.APJD01000014_gene958	2.263e-122	392.0	COG3038@1|root,COG3038@2|Bacteria,1MZ7X@1224|Proteobacteria,2UBYU@28211|Alphaproteobacteria,3JU04@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Prokaryotic cytochrome b561	-	-	-	ko:K12262	-	-	-	-	ko00000	-	-	-	Ni_hydr_CYTB
SX3_k127_1245496_3	1297865.APJD01000014_gene957	2.069e-229	710.0	COG2957@1|root,COG2957@2|Bacteria,1MX65@1224|Proteobacteria,2U0RR@28211|Alphaproteobacteria,3JXN8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Porphyromonas-type peptidyl-arginine deiminase	aguA	-	3.5.3.12	ko:K10536	ko00330,ko01100,map00330,map01100	-	R01416	RC00177	ko00000,ko00001,ko01000	-	-	-	PAD_porph
SX3_k127_1245496_2	172088.AUGA01000020_gene3621	9.95e-254	784.0	COG1473@1|root,COG1473@2|Bacteria,1MUIV@1224|Proteobacteria,2TR5B@28211|Alphaproteobacteria,3JSSH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_09240	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_1245496_11	1297865.APJD01000014_gene955	9.541e-132	426.0	COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,2U0JP@28211|Alphaproteobacteria,3JU69@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	MA20_09265	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_1245496_1	1297865.APJD01000014_gene954	4.715e-278	860.0	COG4585@1|root,COG4585@2|Bacteria,1MWPN@1224|Proteobacteria,2TUJ5@28211|Alphaproteobacteria,3JTN7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	MA20_09270	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA_3
SX3_k127_1245496_9	1297865.APJD01000014_gene953	1.399e-152	483.0	COG0811@1|root,COG0811@2|Bacteria,1PPAP@1224|Proteobacteria,2TS0F@28211|Alphaproteobacteria,3JSC6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	MotA/TolQ/ExbB proton channel family	MA20_09275	-	-	-	-	-	-	-	-	-	-	-	MotA_ExbB
SX3_k127_1245496_16	420662.Mpe_A2592	9.441e-59	211.0	28NA5@1|root,2ZBDZ@2|Bacteria,1MXY5@1224|Proteobacteria,2VMFN@28216|Betaproteobacteria,1KKFX@119065|unclassified Burkholderiales	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1245496_12	1297865.APJD01000014_gene951	5.622e-124	400.0	2E53F@1|root,32ZWJ@2|Bacteria,1N6KB@1224|Proteobacteria,2TSI3@28211|Alphaproteobacteria,3JR3D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_09285	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1245496_14	398525.KB900701_gene5982	9.371e-122	391.0	COG1309@1|root,COG1309@2|Bacteria,1R44G@1224|Proteobacteria,2TTF0@28211|Alphaproteobacteria,3JRTR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_09250	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1245496_7	1297865.APJD01000014_gene949	2.466e-159	503.0	COG0639@1|root,COG0639@2|Bacteria,1MUV1@1224|Proteobacteria,2TSFT@28211|Alphaproteobacteria,3JSJA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Calcineurin-like phosphoesterase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos_2
SX3_k127_1245496_0	1297865.APJD01000014_gene948	1e-323	992.0	COG0515@1|root,COG0589@1|root,COG0515@2|Bacteria,COG0589@2|Bacteria,1MV1P@1224|Proteobacteria,2TQTS@28211|Alphaproteobacteria,3JSWF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KLT	Serine threonine protein kinase	MA20_09295	-	-	-	-	-	-	-	-	-	-	-	Pkinase,Usp
SX3_k127_1245496_10	1297865.APJD01000014_gene947	1.402e-145	467.0	COG0036@1|root,COG0036@2|Bacteria,1MUZM@1224|Proteobacteria,2TQKR@28211|Alphaproteobacteria,3JR4Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the ribulose-phosphate 3-epimerase family	rpe	-	5.1.3.1	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007	R01529	RC00540	ko00000,ko00001,ko00002,ko01000	-	-	-	Ribul_P_3_epim
SX3_k127_1245496_15	172088.AUGA01000020_gene3610	8.788e-105	349.0	COG5126@1|root,COG5126@2|Bacteria,1R6G5@1224|Proteobacteria,2U0AR@28211|Alphaproteobacteria,3JWI8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	DTZ	EF-hand domain pair	-	-	-	-	-	-	-	-	-	-	-	-	EF-hand_5,EF-hand_6,EF-hand_7
SX3_k127_1245496_4	1297865.APJD01000014_gene944	1.384e-205	645.0	COG3191@1|root,COG3191@2|Bacteria,1MWDP@1224|Proteobacteria,2TRDC@28211|Alphaproteobacteria,3JUMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EQ	Peptidase family S58	dmpA	-	3.4.11.19	ko:K01266	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_S58
SX3_k127_1250923_9	1297865.APJD01000009_gene2751	8.192e-44	159.0	2A6HK@1|root,30VAW@2|Bacteria,1R8I4@1224|Proteobacteria,2TUAX@28211|Alphaproteobacteria,3JXYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FRG domain	-	-	-	-	-	-	-	-	-	-	-	-	FRG
SX3_k127_1250923_3	1297865.APJD01000009_gene2750	2.623e-173	546.0	COG0300@1|root,COG0300@2|Bacteria,1NT7C@1224|Proteobacteria,2U0P1@28211|Alphaproteobacteria,3JU7Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_1250923_8	1297865.APJD01000009_gene2749	1.485e-79	267.0	COG0784@1|root,COG0784@2|Bacteria,1RM32@1224|Proteobacteria,2U796@28211|Alphaproteobacteria,3JYXE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	MA20_04865	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_1250923_1	1297865.APJD01000009_gene2748	4.027e-196	611.0	COG0412@1|root,COG0412@2|Bacteria,1R5J6@1224|Proteobacteria,2UE6V@28211|Alphaproteobacteria,3K3GU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Prolyl oligopeptidase family	-	-	-	-	-	-	-	-	-	-	-	-	DLH,Peptidase_S9
SX3_k127_1250923_6	1297865.APJD01000009_gene2747	4.528e-118	381.0	COG1280@1|root,COG1280@2|Bacteria,1MXAI@1224|Proteobacteria,2TQWG@28211|Alphaproteobacteria,3JU18@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	LysE type translocator	MA20_04860	-	-	-	-	-	-	-	-	-	-	-	LysE
SX3_k127_1250923_0	1297865.APJD01000009_gene2746	6.379e-254	787.0	COG2199@1|root,COG3706@2|Bacteria,1MVME@1224|Proteobacteria,2TV5Y@28211|Alphaproteobacteria,3JS9X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF
SX3_k127_1250923_5	1297865.APJD01000009_gene2745	9.855e-136	437.0	COG3023@1|root,COG3023@2|Bacteria,1NCI6@1224|Proteobacteria,2TSC2@28211|Alphaproteobacteria,3JTUP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	N-acetylmuramoyl-L-alanine amidase	-	-	-	-	-	-	-	-	-	-	-	-	Amidase_2
SX3_k127_1250923_7	335659.S23_59390	2.483e-83	278.0	2DRK9@1|root,33C5C@2|Bacteria,1RE1R@1224|Proteobacteria,2U8I7@28211|Alphaproteobacteria,3JZ4F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1250923_2	1230476.C207_03609	9.043e-187	586.0	COG0568@1|root,COG0568@2|Bacteria,1MVWR@1224|Proteobacteria,2TR9Q@28211|Alphaproteobacteria,3JSUI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	RNA polymerase sigma factor RpoH	rpoH	-	-	ko:K03089	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r1_2,Sigma70_r2,Sigma70_r4
SX3_k127_1250923_4	1297865.APJD01000009_gene2742	4.777e-165	518.0	COG0564@1|root,COG0564@2|Bacteria,1MUBN@1224|Proteobacteria,2TSBK@28211|Alphaproteobacteria,3JRC8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Responsible for synthesis of pseudouridine from uracil	rluD	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.23	ko:K06180	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
SX3_k127_1274779_3	1297865.APJD01000001_gene5939	3.908e-261	807.0	COG0654@1|root,COG0654@2|Bacteria,1P1NX@1224|Proteobacteria,2TRZX@28211|Alphaproteobacteria,3JR32@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	MA20_30655	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
SX3_k127_1274779_7	1297865.APJD01000001_gene5940	2.508e-166	527.0	COG3637@1|root,COG3637@2|Bacteria,1NJWW@1224|Proteobacteria,2UD8G@28211|Alphaproteobacteria,3JSHX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	OmpA-like transmembrane domain	-	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_1274779_0	1297865.APJD01000001_gene5941	2e-323	991.0	COG4249@1|root,COG4249@2|Bacteria,1MX7B@1224|Proteobacteria,2TUDI@28211|Alphaproteobacteria,3JRZ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	MA20_30665	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
SX3_k127_1274779_5	1297865.APJD01000001_gene5942	1.467e-182	575.0	COG2207@1|root,COG2207@2|Bacteria,1N3QH@1224|Proteobacteria,2U1E7@28211|Alphaproteobacteria,3JWG5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_1274779_8	1297865.APJD01000001_gene5943	9.253e-139	441.0	COG1309@1|root,COG1309@2|Bacteria,1RJCM@1224|Proteobacteria,2UB9M@28211|Alphaproteobacteria,3JZVU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1274779_9	1230476.C207_01363	1.623e-112	370.0	COG2207@1|root,COG2207@2|Bacteria,1RCPH@1224|Proteobacteria,2U6YY@28211|Alphaproteobacteria,3JYKA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
SX3_k127_1274779_1	1297865.APJD01000001_gene5945	3.083e-311	956.0	COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,2TR6Q@28211|Alphaproteobacteria,3JS2G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the DEAD box helicase family	rhlE	-	3.6.4.13	ko:K03732,ko:K11927	ko03018,map03018	M00394	-	-	ko00000,ko00001,ko00002,ko01000,ko03019	-	-	-	DEAD,Helicase_C
SX3_k127_1274779_4	1297865.APJD01000001_gene5946	3.955e-234	725.0	COG2199@1|root,COG3706@2|Bacteria,1NC00@1224|Proteobacteria,2TU9T@28211|Alphaproteobacteria,3JRRT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	MA20_30680	-	2.7.7.65	ko:K13590	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000	-	-	-	GGDEF
SX3_k127_1274779_10	1297865.APJD01000001_gene5947	2.499e-84	288.0	COG3070@1|root,COG3070@2|Bacteria,1N8X8@1224|Proteobacteria,2UFNC@28211|Alphaproteobacteria,3JYWH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	TfoX N-terminal domain	MA20_30690	-	-	ko:K07343	-	-	-	-	ko00000	-	-	-	TfoX_N
SX3_k127_1274779_11	1230476.C207_01358	1.788e-79	265.0	COG0316@1|root,COG0316@2|Bacteria,1RH6T@1224|Proteobacteria,2UBWJ@28211|Alphaproteobacteria,3JYPC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the HesB IscA family	iscA	GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009058,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0018130,GO:0019438,GO:0019538,GO:0022607,GO:0031163,GO:0031974,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0097428,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	-	ko:K13628	-	-	-	-	ko00000,ko03016	-	-	-	Fe-S_biosyn
SX3_k127_1274779_12	1297865.APJD01000001_gene5949	1.555e-72	246.0	COG2151@1|root,COG2151@2|Bacteria,1MZ9Y@1224|Proteobacteria,2U72U@28211|Alphaproteobacteria,3JYPK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Iron-sulfur cluster assembly protein	MA20_30700	-	-	-	-	-	-	-	-	-	-	-	FeS_assembly_P
SX3_k127_1274779_2	1297865.APJD01000001_gene5950	1.903e-274	848.0	COG0520@1|root,COG0520@2|Bacteria,1MUPD@1224|Proteobacteria,2TRNY@28211|Alphaproteobacteria,3JSRM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine	sufS	-	2.8.1.7,4.4.1.16	ko:K11717	ko00450,ko01100,map00450,map01100	-	R03599,R11528	RC00961,RC01789,RC02313	ko00000,ko00001,ko01000	-	-	-	Aminotran_5
SX3_k127_1274779_6	1297865.APJD01000001_gene5951	2.158e-178	559.0	COG0719@1|root,COG0719@2|Bacteria,1MVK0@1224|Proteobacteria,2TTK9@28211|Alphaproteobacteria,3JSQ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Uncharacterized protein family (UPF0051)	sufD	-	-	ko:K09015	-	-	-	-	ko00000	-	-	-	UPF0051
SX3_k127_1279282_3	1297865.APJD01000007_gene1983	3.811e-262	807.0	COG3825@1|root,COG3825@2|Bacteria,1MUAJ@1224|Proteobacteria,2TS5P@28211|Alphaproteobacteria,3JSTY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	VWA domain containing CoxE-like protein	MA20_01305	-	-	ko:K09989	-	-	-	-	ko00000	-	-	-	VWA_CoxE
SX3_k127_1279282_0	1297865.APJD01000007_gene1982	0.0	1243.0	COG2199@1|root,COG2202@1|root,COG2202@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,2TU0D@28211|Alphaproteobacteria,3JRER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF,PAS,PAS_3,PAS_4,PAS_9,dCache_1
SX3_k127_1279282_7	1297865.APJD01000007_gene1981	4.852e-37	140.0	COG2261@1|root,COG2261@2|Bacteria,1N72Y@1224|Proteobacteria,2UFM5@28211|Alphaproteobacteria,3K0CJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Transglycosylase associated protein	MA20_01300	-	-	-	-	-	-	-	-	-	-	-	Transgly_assoc
SX3_k127_1279282_5	1297865.APJD01000007_gene1980	3.779e-183	572.0	COG0714@1|root,COG0714@2|Bacteria,1MV5I@1224|Proteobacteria,2TRI8@28211|Alphaproteobacteria,3JS7C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain (dynein-related subfamily)	MA20_01295	-	-	-	-	-	-	-	-	-	-	-	AAA,AAA_5
SX3_k127_1279282_2	1297865.APJD01000007_gene1979	0.0	1058.0	COG2072@1|root,COG2072@2|Bacteria,1MU71@1224|Proteobacteria,2TV2E@28211|Alphaproteobacteria,3JQVH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	FMO-like,K_oxygenase,NAD_binding_8,Pyr_redox_2
SX3_k127_1279282_1	1297865.APJD01000007_gene1978	0.0	1150.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,3JUPN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	MA20_01285	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
SX3_k127_1279282_6	1297865.APJD01000007_gene1977	1.457e-129	413.0	COG1670@1|root,COG1670@2|Bacteria,1MXEE@1224|Proteobacteria,2U62V@28211|Alphaproteobacteria,3JVBK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Acetyltransferase (GNAT) domain	-	-	-	ko:K22479	-	-	-	-	ko00000	-	-	-	Acetyltransf_3
SX3_k127_1279282_4	1297865.APJD01000007_gene1976	2.974e-209	651.0	COG3386@1|root,COG3386@2|Bacteria,1MXVD@1224|Proteobacteria,2TVCW@28211|Alphaproteobacteria,3JSYA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	SMP-30/Gluconolaconase/LRE-like region	MA20_01275	-	3.1.1.17	ko:K01053	ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220	M00129	R01519,R02933,R03751	RC00537,RC00983	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	SGL
SX3_k127_1281371_13	1297865.APJD01000033_gene7022	4.461e-108	351.0	COG0524@1|root,COG0524@2|Bacteria,1MUUC@1224|Proteobacteria,2TS9D@28211|Alphaproteobacteria,3JTT2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	pfkB family carbohydrate kinase	pfkB	-	2.7.1.20,2.7.1.4	ko:K00847,ko:K00856	ko00051,ko00230,ko00500,ko00520,ko01100,map00051,map00230,map00500,map00520,map01100	-	R00185,R00760,R00867,R03920	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	PfkB
SX3_k127_1281371_1	1297865.APJD01000033_gene7023	1.775e-304	937.0	COG0728@1|root,COG0728@2|Bacteria,1MUH0@1224|Proteobacteria,2TS44@28211|Alphaproteobacteria,3JS7U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane	murJ	-	-	ko:K03980	-	-	-	-	ko00000,ko01011,ko02000	2.A.66.4	-	-	MVIN
SX3_k127_1281371_5	1297865.APJD01000033_gene7024	4.243e-231	716.0	COG0180@1|root,COG0180@2|Bacteria,1MV4T@1224|Proteobacteria,2TQZX@28211|Alphaproteobacteria,3JT4N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Tryptophanyl-tRNA synthetase	trpS	-	6.1.1.2	ko:K01867	ko00970,map00970	M00359,M00360	R03664	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1b
SX3_k127_1281371_14	172088.AUGA01000027_gene53	1.738e-102	335.0	COG0589@1|root,COG0589@2|Bacteria,1R9XB@1224|Proteobacteria,2U59E@28211|Alphaproteobacteria,3JTIW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Universal stress protein family	MA20_23830	-	-	-	-	-	-	-	-	-	-	-	Usp
SX3_k127_1281371_12	1297865.APJD01000033_gene7026	7.949e-117	386.0	COG0694@1|root,COG0694@2|Bacteria,1MVQ1@1224|Proteobacteria,2TUD1@28211|Alphaproteobacteria,3JR1N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Scaffold protein Nfu/NifU N terminal	nifU	-	-	-	-	-	-	-	-	-	-	-	Nfu_N,NifU
SX3_k127_1281371_11	1297865.APJD01000033_gene7027	1.132e-142	454.0	COG1214@1|root,COG1214@2|Bacteria,1MXPH@1224|Proteobacteria,2TTM2@28211|Alphaproteobacteria,3JTCP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glycoprotease family	yeaZ	-	2.3.1.234	ko:K01409,ko:K14742	-	-	R10648	RC00070,RC00416	ko00000,ko01000,ko03016	-	-	-	Peptidase_M22
SX3_k127_1281371_15	1297865.APJD01000033_gene7028	4.922e-100	332.0	COG0454@1|root,COG0456@2|Bacteria,1RIE6@1224|Proteobacteria,2UF5C@28211|Alphaproteobacteria,3JX20@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FR47-like protein	rimI	-	2.3.1.128	ko:K03789	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Acetyltransf_1,Acetyltransf_10
SX3_k127_1281371_16	1297865.APJD01000033_gene7029	1.459e-91	304.0	COG0735@1|root,COG0735@2|Bacteria,1RDWJ@1224|Proteobacteria,2U6ZS@28211|Alphaproteobacteria,3JUS6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the Fur family	fur	-	-	ko:K03711	-	-	-	-	ko00000,ko03000	-	-	-	FUR
SX3_k127_1281371_10	1297865.APJD01000033_gene7030	1.288e-147	468.0	COG0637@1|root,COG0637@2|Bacteria,1NSPA@1224|Proteobacteria,2U0W3@28211|Alphaproteobacteria,3JT7R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HAD-hyrolase-like	MA20_23860	-	-	-	-	-	-	-	-	-	-	-	HAD_2
SX3_k127_1281371_2	1297865.APJD01000033_gene7031	1.047e-300	923.0	COG0621@1|root,COG0621@2|Bacteria,1MURS@1224|Proteobacteria,2TQN6@28211|Alphaproteobacteria,3JQKY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	miaB	-	2.8.4.3	ko:K06168	-	-	R10645,R10646,R10647	RC00003,RC00980,RC03221,RC03222	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,TRAM,UPF0004
SX3_k127_1281371_7	1297865.APJD01000033_gene7032	3.536e-210	664.0	COG1702@1|root,COG1702@2|Bacteria,1MVDV@1224|Proteobacteria,2TRV3@28211|Alphaproteobacteria,3JS5Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	PhoH-like protein	phoH	-	-	ko:K06217	-	-	-	-	ko00000	-	-	-	PhoH
SX3_k127_1281371_18	521098.Aaci_1983	9.765e-22	102.0	COG0319@1|root,COG0319@2|Bacteria,1V6BU@1239|Firmicutes,4HIIE@91061|Bacilli,279W9@186823|Alicyclobacillaceae	91061|Bacilli	S	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA	ybeY	-	-	ko:K07042	-	-	-	-	ko00000,ko03009	-	-	-	UPF0054
SX3_k127_1281371_4	1297865.APJD01000033_gene7034	7.959e-237	735.0	COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,2TVFA@28211|Alphaproteobacteria,3JSH4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Transporter associated domain	tlyC	-	-	ko:K06189	-	-	-	-	ko00000,ko02000	9.A.40.1.2	-	-	CBS,CorC_HlyC
SX3_k127_1281371_0	1297865.APJD01000033_gene7035	0.0	1073.0	COG0815@1|root,COG0815@2|Bacteria,1MUBU@1224|Proteobacteria,2TQRC@28211|Alphaproteobacteria,3JQPB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transfers the fatty acyl group on membrane lipoproteins	lnt	-	-	ko:K03820	-	-	-	-	ko00000,ko01000	-	GT2	-	CN_hydrolase
SX3_k127_1281371_17	1230476.C207_02322	1.288e-74	256.0	COG1396@1|root,COG1396@2|Bacteria,1RDBW@1224|Proteobacteria,2U7CY@28211|Alphaproteobacteria,3JY7N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix domain	MA20_23890	-	-	-	-	-	-	-	-	-	-	-	HTH_3
SX3_k127_1281371_3	1297865.APJD01000033_gene7037	3.27e-249	769.0	COG0624@1|root,COG0624@2|Bacteria,1MUSU@1224|Proteobacteria,2TRTW@28211|Alphaproteobacteria,3JTYP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase dimerisation domain	-	-	3.4.17.11	ko:K01295	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_1281371_9	1297865.APJD01000033_gene7038	4.349e-162	514.0	COG0220@1|root,COG0220@2|Bacteria,1MUWJ@1224|Proteobacteria,2TUU9@28211|Alphaproteobacteria,3JRZJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA	trmB	GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234	2.1.1.33	ko:K03439	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Methyltransf_4
SX3_k127_1281371_8	398525.KB900701_gene1405	4.91e-188	590.0	COG5285@1|root,COG5285@2|Bacteria,1QRDD@1224|Proteobacteria,2U0EC@28211|Alphaproteobacteria,3JQYY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phytanoyl-CoA dioxygenase (PhyH)	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
SX3_k127_1281371_6	1297865.APJD01000033_gene7040	8.524e-220	682.0	COG5330@1|root,COG5330@2|Bacteria,1R3VY@1224|Proteobacteria,2TSZ2@28211|Alphaproteobacteria,3JV4H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
SX3_k127_129066_12	1297865.APJD01000026_gene2470	2.227e-136	437.0	COG1540@1|root,COG1540@2|Bacteria,1MUYV@1224|Proteobacteria,2TQUC@28211|Alphaproteobacteria,3JT0U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0271 (lamB) family	MA20_13135	-	-	ko:K07160	-	-	-	-	ko00000	-	-	-	LamB_YcsF
SX3_k127_129066_4	1297865.APJD01000026_gene2471	1.042e-213	673.0	COG1984@1|root,COG1984@2|Bacteria,1MU9H@1224|Proteobacteria,2TS7P@28211|Alphaproteobacteria,3JUFZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Allophanate hydrolase subunit 2	MA20_13140	-	3.5.1.54	ko:K01457	ko00220,ko00791,ko01100,ko01120,map00220,map00791,map01100,map01120	-	R00005	RC02756	ko00000,ko00001,ko01000	-	-	-	CT_A_B
SX3_k127_129066_9	1297865.APJD01000026_gene2472	1.375e-150	477.0	COG2049@1|root,COG2049@2|Bacteria,1MWRB@1224|Proteobacteria,2U0AE@28211|Alphaproteobacteria,3JS42@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Allophanate hydrolase subunit 1	MA20_13145	-	3.5.1.54	ko:K01457	ko00220,ko00791,ko01100,ko01120,map00220,map00791,map01100,map01120	-	R00005	RC02756	ko00000,ko00001,ko01000	-	-	-	CT_C_D
SX3_k127_129066_10	1297865.APJD01000026_gene2473	8.867e-147	467.0	COG0684@1|root,COG0684@2|Bacteria,1MUWV@1224|Proteobacteria,2TU1X@28211|Alphaproteobacteria,3JUHY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Aldolase/RraA	MA20_13150	-	-	-	-	-	-	-	-	-	-	-	RraA-like
SX3_k127_129066_15	1297865.APJD01000026_gene2474	5.991e-86	289.0	COG1917@1|root,COG1917@2|Bacteria,1RH1V@1224|Proteobacteria,2U990@28211|Alphaproteobacteria,3JYQR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AraC-like ligand binding domain	MA20_13155	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_129066_8	1297865.APJD01000026_gene2475	3.156e-168	529.0	COG0834@1|root,COG0834@2|Bacteria,1MWDK@1224|Proteobacteria,2TWHY@28211|Alphaproteobacteria,3JQVI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	pheC	-	4.2.1.51,4.2.1.91	ko:K01713	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00024	R00691,R01373	RC00360	ko00000,ko00001,ko00002,ko01000	-	-	-	SBP_bac_3
SX3_k127_129066_13	1297865.APJD01000026_gene2476	2.225e-131	420.0	2A6PJ@1|root,30VHG@2|Bacteria,1R9W6@1224|Proteobacteria,2U5KC@28211|Alphaproteobacteria,3JY5T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_129066_0	1297865.APJD01000026_gene2477	9.326e-311	954.0	COG0154@1|root,COG0154@2|Bacteria,1MWWQ@1224|Proteobacteria,2TSN9@28211|Alphaproteobacteria,3JS0D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the amidase family	-	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_129066_5	1297865.APJD01000026_gene2478	9.121e-205	657.0	COG0111@1|root,COG0111@2|Bacteria,1NU4B@1224|Proteobacteria,2TRM8@28211|Alphaproteobacteria,3JTYB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family	MA20_13185	-	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_129066_3	1297865.APJD01000026_gene2479	3.962e-238	737.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,3JT2D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	MA20_13190	-	-	ko:K10112	ko02010,map02010	M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1	-	-	ABC_tran,TOBE,TOBE_2
SX3_k127_129066_7	1297865.APJD01000026_gene2480	3.85e-194	612.0	COG0395@1|root,COG0395@2|Bacteria,1PG6Q@1224|Proteobacteria,2U1HZ@28211|Alphaproteobacteria,3JTY3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	MA20_13195	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_129066_6	1297865.APJD01000026_gene2481	1.484e-200	625.0	COG1175@1|root,COG1175@2|Bacteria,1MXKR@1224|Proteobacteria,2TRDJ@28211|Alphaproteobacteria,3JUDP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	MA20_13200	-	-	ko:K02025	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_129066_1	1297865.APJD01000026_gene2482	1.109e-272	845.0	COG1653@1|root,COG1653@2|Bacteria,1MXY4@1224|Proteobacteria,2TS7N@28211|Alphaproteobacteria,3JU4D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_1,SBP_bac_8
SX3_k127_129066_11	1297865.APJD01000026_gene2483	8.486e-140	448.0	2FCGM@1|root,344K2@2|Bacteria,1MY21@1224|Proteobacteria,2U2D8@28211|Alphaproteobacteria,3JWIX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	LTXXQ motif family protein	-	-	-	-	-	-	-	-	-	-	-	-	LTXXQ
SX3_k127_129066_17	114615.BRADO3472	7e-35	142.0	2900F@1|root,2ZMQR@2|Bacteria,1P528@1224|Proteobacteria,2UW2G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_129066_14	1297865.APJD01000026_gene2484	1.998e-86	286.0	COG0346@1|root,COG0346@2|Bacteria,1N7R0@1224|Proteobacteria,2U65K@28211|Alphaproteobacteria,3JY8W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_129066_2	1297865.APJD01000026_gene2485	2.696e-260	803.0	COG1960@1|root,COG1960@2|Bacteria,1MXMQ@1224|Proteobacteria,2U0CV@28211|Alphaproteobacteria,3JUP6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.14.13.235	ko:K22027	-	-	-	-	ko00000,ko01000	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_N
SX3_k127_129066_16	1297865.APJD01000026_gene2486	3.004e-66	226.0	COG0477@1|root,COG2814@2|Bacteria,1QAIM@1224|Proteobacteria,2U3KU@28211|Alphaproteobacteria,3JW30@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
SX3_k127_1291786_46	1297865.APJD01000005_gene3742	7.341e-59	205.0	COG0477@1|root,COG2814@2|Bacteria,1MX2Q@1224|Proteobacteria,2TRNS@28211|Alphaproteobacteria,3JS7R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Fungal trichothecene efflux pump (TRI12)	MA20_15570	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1291786_29	1297865.APJD01000005_gene3741	8.517e-119	383.0	COG2983@1|root,COG2983@2|Bacteria,1RHMX@1224|Proteobacteria,2U99S@28211|Alphaproteobacteria,3JR5E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0260 family	MA20_15575	-	-	ko:K09160	-	-	-	-	ko00000	-	-	-	CxxCxxCC
SX3_k127_1291786_0	1297865.APJD01000005_gene3740	0.0	1559.0	COG0744@1|root,COG0744@2|Bacteria,1QTST@1224|Proteobacteria,2TQQ8@28211|Alphaproteobacteria,3JR76@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	penicillin-binding protein	pbp	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	Transgly,Transpeptidase
SX3_k127_1291786_28	1297865.APJD01000005_gene3739	4.119e-119	385.0	COG5402@1|root,COG5402@2|Bacteria,1N26C@1224|Proteobacteria,2TT9K@28211|Alphaproteobacteria,3JU6I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1214)	MA20_15585	-	-	-	-	-	-	-	-	-	-	-	DUF1214
SX3_k127_1291786_30	1297865.APJD01000005_gene3738	9.085e-119	389.0	COG5436@1|root,COG5436@2|Bacteria,1MW0D@1224|Proteobacteria,2TU65@28211|Alphaproteobacteria,3JSRN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1254)	MA20_15590	-	-	-	-	-	-	-	-	-	-	-	DUF1254
SX3_k127_1291786_14	1297865.APJD01000005_gene3737	9.313e-194	605.0	COG0491@1|root,COG0491@2|Bacteria,1N1ZW@1224|Proteobacteria,2TUMN@28211|Alphaproteobacteria,3JTZK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_1291786_16	1297865.APJD01000005_gene3736	1.899e-178	559.0	COG0583@1|root,COG0583@2|Bacteria,1RC4N@1224|Proteobacteria,2VF1M@28211|Alphaproteobacteria,3JV5X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1291786_21	1297865.APJD01000005_gene3735	1.413e-159	505.0	2CVSH@1|root,32SY5@2|Bacteria,1MVP4@1224|Proteobacteria,2TTAG@28211|Alphaproteobacteria,3JQUT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_15675	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1291786_48	1297865.APJD01000005_gene3734	4.649e-30	122.0	2C35M@1|root,301N4@2|Bacteria,1N8YA@1224|Proteobacteria,2UFAA@28211|Alphaproteobacteria,3K1A0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1291786_15	1297865.APJD01000005_gene3733	9.308e-183	575.0	COG5330@1|root,COG5330@2|Bacteria,1MUTG@1224|Proteobacteria,2U0SA@28211|Alphaproteobacteria,3JQV3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
SX3_k127_1291786_41	1297865.APJD01000005_gene3732	1.432e-76	256.0	COG5447@1|root,COG5447@2|Bacteria,1N1KU@1224|Proteobacteria,2UCBQ@28211|Alphaproteobacteria,3JYZB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1491)	MA20_15690	-	-	-	-	-	-	-	-	-	-	-	DUF1491
SX3_k127_1291786_4	1297865.APJD01000005_gene3731	0.0	1102.0	COG0666@1|root,COG0666@2|Bacteria,1P877@1224|Proteobacteria,2U33E@28211|Alphaproteobacteria,3JTQB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ankyrin repeats	-	-	-	-	-	-	-	-	-	-	-	-	Ank,Ank_2
SX3_k127_1291786_25	1297865.APJD01000005_gene3730	6.097e-143	455.0	COG3409@1|root,COG3409@2|Bacteria,1NFKG@1224|Proteobacteria,2UI0E@28211|Alphaproteobacteria,3JVIT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Putative peptidoglycan binding domain	-	-	-	-	-	-	-	-	-	-	-	-	PG_binding_1
SX3_k127_1291786_3	1297865.APJD01000005_gene3729	0.0	1137.0	COG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TSRP@28211|Alphaproteobacteria,3JSU6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	divJ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.13.3	ko:K07716,ko:K11357	ko02020,ko04112,map02020,map04112	M00511	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS,PAS_3,PAS_4
SX3_k127_1291786_42	1297865.APJD01000005_gene3728	2.232e-70	250.0	2E4C7@1|root,32Z7R@2|Bacteria,1RBPI@1224|Proteobacteria,2U5ZQ@28211|Alphaproteobacteria,3JY81@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Family of unknown function (DUF5330)	-	-	-	-	-	-	-	-	-	-	-	-	DUF5330
SX3_k127_1291786_38	1297865.APJD01000005_gene3727	8.41e-89	293.0	COG2166@1|root,COG2166@2|Bacteria,1RI8F@1224|Proteobacteria,2U9A2@28211|Alphaproteobacteria,3JY1C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Fe-S metabolism associated domain	sufE	-	-	ko:K02426	-	-	-	-	ko00000	-	-	-	SufE
SX3_k127_1291786_39	1297865.APJD01000005_gene3726	3.453e-82	275.0	COG4957@1|root,COG4957@2|Bacteria,1RGUW@1224|Proteobacteria,2U99M@28211|Alphaproteobacteria,3JY44@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulator	MA20_15715	-	-	-	-	-	-	-	-	-	-	-	ROS_MUCR
SX3_k127_1291786_17	1297865.APJD01000005_gene3725	5.33e-178	560.0	2E7KS@1|root,3322S@2|Bacteria,1PBYA@1224|Proteobacteria,2U1J9@28211|Alphaproteobacteria,3JTUG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1291786_5	1297865.APJD01000005_gene3724	0.0	1083.0	COG1807@1|root,COG1807@2|Bacteria,1NSSV@1224|Proteobacteria,2TSZG@28211|Alphaproteobacteria,3JU5Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	MA20_15725	-	-	-	-	-	-	-	-	-	-	-	PMT_2
SX3_k127_1291786_19	1297865.APJD01000005_gene3723	9.235e-172	540.0	COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2TRMV@28211|Alphaproteobacteria,3JSHD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	MA20_15730	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
SX3_k127_1291786_44	196490.AUEZ01000075_gene7651	2.439e-68	234.0	COG1943@1|root,COG1943@2|Bacteria,1RCWW@1224|Proteobacteria,2U5BB@28211|Alphaproteobacteria,3JY75@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Transposase IS200 like	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
SX3_k127_1291786_49	1380355.JNIJ01000033_gene4251	1.613e-13	77.0	COG1943@1|root,COG1943@2|Bacteria,1RCWW@1224|Proteobacteria,2U5BB@28211|Alphaproteobacteria,3JY75@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Transposase IS200 like	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
SX3_k127_1291786_8	1297865.APJD01000005_gene3722	2.903e-313	963.0	COG0624@1|root,COG0624@2|Bacteria,1MW20@1224|Proteobacteria,2TQY4@28211|Alphaproteobacteria,3JQX1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase dimerisation domain	MA20_15735	-	-	ko:K01436	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_1291786_7	1297865.APJD01000005_gene3721	0.0	1052.0	COG0433@1|root,COG0433@2|Bacteria,1MU59@1224|Proteobacteria,2TRU8@28211|Alphaproteobacteria,3JRPZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF853)	yjgR	-	-	ko:K06915	-	-	-	-	ko00000	-	-	-	DUF853
SX3_k127_1291786_45	398525.KB900701_gene3752	3.41e-66	229.0	2AUTH@1|root,31KGJ@2|Bacteria,1RH09@1224|Proteobacteria,2UAJV@28211|Alphaproteobacteria,3JYQI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_15750	-	-	-	-	-	-	-	-	-	-	-	DUF2780
SX3_k127_1291786_40	1297865.APJD01000005_gene3720	8.487e-77	260.0	COG3743@1|root,COG3743@2|Bacteria,1RA3K@1224|Proteobacteria,2U7GQ@28211|Alphaproteobacteria,3JY2M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4332)	MA20_15755	-	-	-	-	-	-	-	-	-	-	-	DUF4332
SX3_k127_1291786_20	1297865.APJD01000005_gene3719	1.678e-168	532.0	COG0294@1|root,COG0294@2|Bacteria,1MUIR@1224|Proteobacteria,2TTMG@28211|Alphaproteobacteria,3JRVE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives	folP	-	2.5.1.15,2.7.6.3	ko:K00796,ko:K13941,ko:K18824	ko00790,ko01100,map00790,map01100	M00126,M00840,M00841	R03066,R03067,R03503	RC00002,RC00017,RC00121,RC00842	ko00000,ko00001,ko00002,ko01000,ko01504	-	-	-	Pterin_bind
SX3_k127_1291786_43	1297865.APJD01000005_gene3718	2.25e-70	246.0	COG1539@1|root,COG1539@2|Bacteria,1RHII@1224|Proteobacteria,2UGT3@28211|Alphaproteobacteria,3JZ50@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin	folB	-	1.13.11.81,4.1.2.25,5.1.99.8	ko:K01633	ko00790,ko01100,map00790,map01100	M00126,M00840	R03504,R11037,R11073	RC00721,RC00943,RC01479,RC03333,RC03334	ko00000,ko00001,ko00002,ko01000	-	-	-	FolB
SX3_k127_1291786_35	1297865.APJD01000005_gene3717	7.207e-101	329.0	COG0801@1|root,COG0801@2|Bacteria,1MZH8@1224|Proteobacteria,2U8D6@28211|Alphaproteobacteria,3JWAZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	folK	-	2.7.6.3,4.1.2.25	ko:K00950,ko:K13940	ko00790,ko01100,map00790,map01100	M00126,M00841	R03503,R03504	RC00002,RC00017,RC00721,RC00943	ko00000,ko00001,ko00002,ko01000	-	-	-	HPPK
SX3_k127_1291786_2	1297865.APJD01000005_gene3716	0.0	1222.0	COG1884@1|root,COG1884@2|Bacteria,1NR2K@1224|Proteobacteria,2TSYT@28211|Alphaproteobacteria,3JR6E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Methylmalonyl-CoA mutase	mutA	-	5.4.99.2	ko:K01847	ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200	M00373,M00376,M00741	R00833	RC00395	ko00000,ko00001,ko00002,ko01000	-	-	-	MM_CoA_mutase
SX3_k127_1291786_36	1230476.C207_06224	1.409e-94	311.0	COG3791@1|root,COG3791@2|Bacteria,1RE8S@1224|Proteobacteria,2U73V@28211|Alphaproteobacteria,3JVB0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
SX3_k127_1291786_1	1297865.APJD01000005_gene3714	0.0	1409.0	COG1884@1|root,COG2185@1|root,COG1884@2|Bacteria,COG2185@2|Bacteria,1MUXX@1224|Proteobacteria,2TQYC@28211|Alphaproteobacteria,3JSBP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Methylmalonyl-CoA mutase	mutB	-	5.4.99.2	ko:K01847	ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200	M00373,M00376,M00741	R00833	RC00395	ko00000,ko00001,ko00002,ko01000	-	-	-	B12-binding,MM_CoA_mutase
SX3_k127_1291786_18	1297865.APJD01000005_gene3713	1.843e-172	542.0	2ANQE@1|root,31DQ0@2|Bacteria,1MWJD@1224|Proteobacteria,2TTQI@28211|Alphaproteobacteria,3JRIK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3298)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3298,DUF4163
SX3_k127_1291786_34	1297865.APJD01000005_gene3712	4.081e-104	346.0	COG3427@1|root,COG3427@2|Bacteria,1RCAV@1224|Proteobacteria,2U6C0@28211|Alphaproteobacteria,3JYHR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
SX3_k127_1291786_10	1297865.APJD01000005_gene3711	1.391e-269	839.0	COG0705@1|root,COG0705@2|Bacteria,1Q79P@1224|Proteobacteria,2UAMU@28211|Alphaproteobacteria,3JWSP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Rhomboid family	-	-	3.4.21.105	ko:K19225	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Rhomboid
SX3_k127_1291786_13	1297865.APJD01000005_gene3710	3.458e-203	636.0	COG1703@1|root,COG1703@2|Bacteria,1MVI0@1224|Proteobacteria,2TS96@28211|Alphaproteobacteria,3JRRJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	LAO AO transport system	argK	-	-	ko:K07588	-	-	-	-	ko00000,ko01000	-	-	-	ArgK
SX3_k127_1291786_26	1297865.APJD01000005_gene3709	4.136e-138	439.0	COG2039@1|root,COG2039@2|Bacteria,1MWYG@1224|Proteobacteria,2TU8G@28211|Alphaproteobacteria,3JQYT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Removes 5-oxoproline from various penultimate amino acid residues except L-proline	MA20_15835	-	3.4.19.3	ko:K01304	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_C15
SX3_k127_1291786_47	317936.Nos7107_2446	8.385e-38	156.0	COG0265@1|root,COG0457@1|root,COG0265@2|Bacteria,COG0457@2|Bacteria,1G4J0@1117|Cyanobacteria,1HJ4A@1161|Nostocales	1117|Cyanobacteria	O	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_1,TPR_11,TPR_2,TPR_8,Trypsin_2
SX3_k127_1291786_22	1297865.APJD01000005_gene3708	2.661e-157	497.0	COG1028@1|root,COG1028@2|Bacteria,1R413@1224|Proteobacteria,2TW0W@28211|Alphaproteobacteria,3K6DW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_1291786_6	1297865.APJD01000005_gene3707	0.0	1077.0	COG0028@1|root,COG0028@2|Bacteria,1MX6Q@1224|Proteobacteria,2TS3K@28211|Alphaproteobacteria,3JX86@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, central domain	-	-	-	-	-	-	-	-	-	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_1291786_9	1297865.APJD01000005_gene3706	4.219e-290	892.0	COG5434@1|root,COG5434@2|Bacteria,1N3IG@1224|Proteobacteria,2U0A8@28211|Alphaproteobacteria,3JSMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Right handed beta helix region	MA20_15840	-	-	-	-	-	-	-	-	-	-	-	Beta_helix,Pectate_lyase_3
SX3_k127_1291786_37	1297865.APJD01000005_gene3705	7.998e-93	305.0	28VSQ@1|root,2ZHUH@2|Bacteria,1N2DW@1224|Proteobacteria,2UCYN@28211|Alphaproteobacteria,3K02K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1291786_24	1297865.APJD01000005_gene3704	8.323e-148	473.0	COG5662@1|root,COG5662@2|Bacteria,1QPSZ@1224|Proteobacteria,2TU7W@28211|Alphaproteobacteria,3JSW8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AntiSigma factor	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1291786_33	1038860.AXAP01000038_gene3775	3.273e-106	347.0	COG1595@1|root,COG1595@2|Bacteria,1MVPD@1224|Proteobacteria,2TVKC@28211|Alphaproteobacteria,3JTB7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	MA20_15865	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4,Sigma70_r4_2
SX3_k127_1291786_11	1297865.APJD01000005_gene3702	2.908e-232	726.0	COG2199@1|root,COG3706@2|Bacteria,1RD8D@1224|Proteobacteria,2U0TB@28211|Alphaproteobacteria,3JRD3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	diguanylate cyclase	-	-	2.7.7.65	ko:K21019	ko02025,map02025	-	-	-	ko00000,ko00001,ko01000	-	-	-	GGDEF,MASE1,PAS,PAS_3,PAS_4
SX3_k127_1291786_12	1297865.APJD01000005_gene3701	5.661e-225	708.0	COG5330@1|root,COG5330@2|Bacteria,1R3VY@1224|Proteobacteria,2TUQ8@28211|Alphaproteobacteria,3JSHG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
SX3_k127_1291786_27	1297865.APJD01000005_gene3700	2.794e-125	404.0	COG4944@1|root,COG4944@2|Bacteria,1MXEV@1224|Proteobacteria,2TQKY@28211|Alphaproteobacteria,3JUGU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1109)	MA20_15880	-	-	-	-	-	-	-	-	-	-	-	DUF1109
SX3_k127_1291786_31	1297865.APJD01000005_gene3699	4.904e-109	354.0	COG1595@1|root,COG1595@2|Bacteria,1MVS7@1224|Proteobacteria,2U0XJ@28211|Alphaproteobacteria,3JSXU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	MA20_15885	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_1291786_32	1297865.APJD01000005_gene3698	1.119e-107	355.0	2A5MM@1|root,30UCA@2|Bacteria,1Q16S@1224|Proteobacteria,2U0RI@28211|Alphaproteobacteria,3JUXX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1291786_23	1297865.APJD01000005_gene3697	6.907e-152	488.0	COG1024@1|root,COG1024@2|Bacteria,1MWZC@1224|Proteobacteria,2TRYS@28211|Alphaproteobacteria,3JSFG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	MA20_15895	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_1295588_1	1297865.APJD01000007_gene2028	1.133e-190	595.0	COG1946@1|root,COG1946@2|Bacteria,1RJ64@1224|Proteobacteria,2UR6T@28211|Alphaproteobacteria,3K35H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA thioesterase	-	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
SX3_k127_1295588_2	1297865.APJD01000007_gene2027	1.164e-38	146.0	2DHW8@1|root,3015N@2|Bacteria,1N687@1224|Proteobacteria,2UC6M@28211|Alphaproteobacteria,3K0TS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1295588_0	1297865.APJD01000007_gene2026	0.0	1341.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JSME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_1296361_1	1297865.APJD01000020_gene308	9.278e-221	685.0	COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2TSRF@28211|Alphaproteobacteria,3JTG4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Belongs to the bacterial solute-binding protein 3 family	MA20_30070	-	-	ko:K09969	ko02010,map02010	M00232	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	SBP_bac_3
SX3_k127_1296361_0	1297865.APJD01000020_gene309	1.095e-248	769.0	COG4597@1|root,COG4597@2|Bacteria,1MV0S@1224|Proteobacteria,2TR7G@28211|Alphaproteobacteria,3JV9Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	amino acid ABC transporter	MA20_30065	-	-	ko:K09970	ko02010,map02010	M00232	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	BPD_transp_1
SX3_k127_1296361_2	1297865.APJD01000020_gene310	5.734e-214	683.0	COG0765@1|root,COG0765@2|Bacteria,1MV3I@1224|Proteobacteria,2TR9C@28211|Alphaproteobacteria,3JRDN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	amino acid ABC	-	-	-	ko:K09971	ko02010,map02010	M00232	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	BPD_transp_1
SX3_k127_1298165_0	1230476.C207_01501	0.0	1211.0	COG0188@1|root,COG0188@2|Bacteria,1MUGG@1224|Proteobacteria,2TSPQ@28211|Alphaproteobacteria,3JSSS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrA	-	5.99.1.3	ko:K02469	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
SX3_k127_1298165_6	1297865.APJD01000026_gene2392	4.854e-78	261.0	COG5395@1|root,COG5395@2|Bacteria,1N0CF@1224|Proteobacteria,2UC5R@28211|Alphaproteobacteria,3JYQZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted membrane protein (DUF2306)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2306
SX3_k127_1298165_5	1297865.APJD01000026_gene2391	5.675e-100	329.0	COG0629@1|root,COG0629@2|Bacteria,1RCWT@1224|Proteobacteria,2U5BZ@28211|Alphaproteobacteria,3JRSD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	ssb	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	-	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	-	-	-	ko00000,ko00001,ko03029,ko03032,ko03400	-	-	-	SSB
SX3_k127_1298165_2	1297865.APJD01000026_gene2390	6.001e-164	517.0	COG3637@1|root,COG3637@2|Bacteria,1MWEG@1224|Proteobacteria,2TSCB@28211|Alphaproteobacteria,3JTF0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_1298165_3	1297865.APJD01000026_gene2389	6.521e-159	503.0	COG3637@1|root,COG3637@2|Bacteria,1MV2H@1224|Proteobacteria,2TTV4@28211|Alphaproteobacteria,3JT5Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_1298165_4	1297865.APJD01000026_gene2388	1.436e-129	416.0	COG3637@1|root,COG3637@2|Bacteria,1NJWW@1224|Proteobacteria,2UD8G@28211|Alphaproteobacteria,3JWFZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Outer membrane protein beta-barrel domain	-	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_1298165_1	1297865.APJD01000026_gene2387	5.654e-178	561.0	COG0178@1|root,COG0178@2|Bacteria,1MW0W@1224|Proteobacteria,2TQK9@28211|Alphaproteobacteria,3JTF6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate	uvrA	-	-	ko:K03701	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	ABC_tran
SX3_k127_1300441_0	1297865.APJD01000015_gene3436	2.408e-219	681.0	COG4784@1|root,COG4784@2|Bacteria,1QTT7@1224|Proteobacteria,2TTU7@28211|Alphaproteobacteria,3JSNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase family M48	MA20_40030	-	-	-	-	-	-	-	-	-	-	-	LysM,Peptidase_M48
SX3_k127_1300441_1	1297865.APJD01000015_gene3437	1.802e-148	475.0	COG1525@1|root,COG1525@2|Bacteria,1R3VA@1224|Proteobacteria,2U0NK@28211|Alphaproteobacteria,3JRDT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Staphylococcal nuclease homologue	-	-	-	-	-	-	-	-	-	-	-	-	SNase
SX3_k127_1300441_2	1297865.APJD01000015_gene3438	6.2e-141	451.0	COG2373@1|root,COG3210@1|root,COG4932@1|root,COG2373@2|Bacteria,COG3210@2|Bacteria,COG4932@2|Bacteria,1QUUN@1224|Proteobacteria,2TX9V@28211|Alphaproteobacteria,3K64F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Bacterial Ig-like domain (group 3)	-	-	-	-	-	-	-	-	-	-	-	-	Big_3_3,PATR
SX3_k127_132335_0	1297865.APJD01000014_gene738	0.0	1875.0	COG3710@1|root,COG3903@1|root,COG3710@2|Bacteria,COG3903@2|Bacteria,1MWPD@1224|Proteobacteria,2TQQR@28211|Alphaproteobacteria,3JTWJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulatory protein, C terminal	-	-	-	-	-	-	-	-	-	-	-	-	AAA_22,NB-ARC,Trans_reg_C
SX3_k127_132335_2	1297865.APJD01000014_gene737	2.802e-80	272.0	29I11@1|root,304Y4@2|Bacteria,1NMYJ@1224|Proteobacteria,2UNKE@28211|Alphaproteobacteria,3K27R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_132335_1	1297865.APJD01000014_gene736	4.714e-102	332.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TRUA@28211|Alphaproteobacteria,3JRAQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Function of homologous gene experimentally demonstrated in an other organism	-	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1,Hydrolase_4
SX3_k127_1324364_4	1230476.C207_03529	9.654e-91	299.0	COG3719@1|root,COG3719@2|Bacteria,1PTUN@1224|Proteobacteria,2TQUU@28211|Alphaproteobacteria,3JSX9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the RNase T2 family	rns	-	3.1.27.1,3.1.27.6	ko:K01166,ko:K01169	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Ribonuclease_T2
SX3_k127_1324364_3	1297865.APJD01000009_gene2824	2.603e-103	341.0	2CSH4@1|root,32SR7@2|Bacteria,1N366@1224|Proteobacteria,2UE8T@28211|Alphaproteobacteria,3JX2G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1324364_6	1230476.C207_03531	2.383e-52	191.0	29A3V@1|root,2ZX51@2|Bacteria,1N1FQ@1224|Proteobacteria,2UDE2@28211|Alphaproteobacteria,3K04X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_05540	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1324364_2	1297865.APJD01000009_gene2822	1.356e-106	355.0	29V5H@1|root,30GJ5@2|Bacteria,1PHC8@1224|Proteobacteria,2TUP3@28211|Alphaproteobacteria,3JWIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF3617
SX3_k127_1324364_0	1297865.APJD01000009_gene2821	0.0	1468.0	COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2TVX5@28211|Alphaproteobacteria,3K6QH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_1324364_1	1297865.APJD01000009_gene2820	1.303e-294	906.0	COG0642@1|root,COG2205@2|Bacteria,1MUAK@1224|Proteobacteria,2TQRE@28211|Alphaproteobacteria,3JR9T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	envZ	-	2.7.13.3	ko:K07638	ko02020,ko02026,map02020,map02026	M00445,M00742,M00743	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA
SX3_k127_1324364_5	1297865.APJD01000009_gene2819	1.031e-66	227.0	COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,2TSQF@28211|Alphaproteobacteria,3JSI0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	transcriptional regulator, winged helix family	petR	-	-	ko:K07659	ko02020,ko02026,map02020,map02026	M00445,M00742,M00743	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_1329191_0	1297865.APJD01000018_gene5755	0.0	1039.0	COG1335@1|root,COG3386@1|root,COG1335@2|Bacteria,COG3386@2|Bacteria,1MU0C@1224|Proteobacteria,2TSXG@28211|Alphaproteobacteria,3JUN4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GQ	SMP-30/Gluconolaconase/LRE-like region	MA20_13995	-	3.1.1.17	ko:K01053,ko:K14274	ko00030,ko00040,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00040,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220	M00129	R01519,R02427,R02933,R03751	RC00537,RC00713,RC00983	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Isochorismatase,SGL
SX3_k127_1329191_3	1297865.APJD01000018_gene5754	2.121e-118	382.0	COG1182@1|root,COG1182@2|Bacteria,1NJP3@1224|Proteobacteria,2TT0Q@28211|Alphaproteobacteria,3JSSK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity	-	-	-	ko:K01118	-	-	-	-	ko00000,ko01000	-	-	-	Flavodoxin_2
SX3_k127_1329191_4	1304877.KI519399_gene3301	0.0002544	44.0	2A79Y@1|root,30W6M@2|Bacteria,1RD3K@1224|Proteobacteria,2U7AJ@28211|Alphaproteobacteria,3JYYU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1329191_1	1297865.APJD01000018_gene5753	7.015e-281	865.0	COG0642@1|root,COG2205@2|Bacteria,1MW8M@1224|Proteobacteria,2TUSJ@28211|Alphaproteobacteria,3JSVN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
SX3_k127_1329191_2	1297865.APJD01000018_gene5752	6.096e-143	458.0	COG0745@1|root,COG0745@2|Bacteria,1MU67@1224|Proteobacteria,2U261@28211|Alphaproteobacteria,3JTHT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	-	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_1336619_0	1297865.APJD01000011_gene6700	1.084e-263	813.0	COG2733@1|root,COG2733@2|Bacteria,1MX3G@1224|Proteobacteria,2U15J@28211|Alphaproteobacteria,3JSYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF445)	-	-	-	-	-	-	-	-	-	-	-	-	DUF445
SX3_k127_1336619_5	1297865.APJD01000011_gene6699	1.581e-31	134.0	2BR4F@1|root,32K2D@2|Bacteria,1P18J@1224|Proteobacteria,2UU5G@28211|Alphaproteobacteria,3K4ZW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1336619_2	1297865.APJD01000011_gene6698	1.279e-244	758.0	2E6HP@1|root,3314Y@2|Bacteria,1QGPJ@1224|Proteobacteria,2UP1A@28211|Alphaproteobacteria,3K3AP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1336619_3	1297865.APJD01000011_gene6697	1.804e-201	635.0	COG0329@1|root,COG0329@2|Bacteria,1MWV5@1224|Proteobacteria,2TRE1@28211|Alphaproteobacteria,3JW2J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EM	Dihydrodipicolinate synthetase family	MA20_21525	-	4.2.1.43	ko:K13876	ko00053,ko01100,map00053,map01100	-	R02278	RC00429	ko00000,ko00001,ko01000	-	-	-	DHDPS
SX3_k127_1336619_1	1297865.APJD01000011_gene6696	2.856e-254	800.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria,3JTE3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_FMN
SX3_k127_1336619_4	1230476.C207_03148	4.297e-166	528.0	COG2141@1|root,COG2141@2|Bacteria,1N899@1224|Proteobacteria,2TTZ7@28211|Alphaproteobacteria,3JT2F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_21690	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_1336745_16	330084.JNYZ01000002_gene1746	1.306e-32	132.0	COG0154@1|root,COG0154@2|Bacteria,2GKPZ@201174|Actinobacteria,4E1PC@85010|Pseudonocardiales	201174|Actinobacteria	J	Belongs to the amidase family	-	-	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
SX3_k127_1336745_2	330084.JNYZ01000002_gene1745	4.637e-113	378.0	COG2141@1|root,COG2141@2|Bacteria,2GKP1@201174|Actinobacteria	201174|Actinobacteria	C	Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_1336745_11	1297865.APJD01000016_gene3381	7.272e-66	229.0	COG0251@1|root,COG0251@2|Bacteria	2|Bacteria	J	oxidation-reduction process	aldR	-	3.5.99.10	ko:K09022	-	-	R11098,R11099	RC03275,RC03354	ko00000,ko01000	-	-	-	Ribonuc_L-PSP
SX3_k127_1336745_9	1502850.FG91_00563	3.433e-70	249.0	COG1846@1|root,COG1853@1|root,COG1846@2|Bacteria,COG1853@2|Bacteria,1RGYM@1224|Proteobacteria,2UCHI@28211|Alphaproteobacteria,2K5NZ@204457|Sphingomonadales	204457|Sphingomonadales	K	COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
SX3_k127_1336745_6	460265.Mnod_5498	1.224e-87	300.0	COG2084@1|root,COG2084@2|Bacteria,1MWR4@1224|Proteobacteria,2U157@28211|Alphaproteobacteria,1JTSB@119045|Methylobacteriaceae	28211|Alphaproteobacteria	I	6-phosphogluconate dehydrogenase NAD-binding	-	-	1.1.1.31	ko:K00020	ko00280,ko01100,map00280,map01100	-	R05066	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_1336745_19	234621.RER_46440	3.478e-07	55.0	2ARGU@1|root,31GT3@2|Bacteria,2HA8X@201174|Actinobacteria,4G8BQ@85025|Nocardiaceae	201174|Actinobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1336745_3	316058.RPB_4410	7.014e-97	320.0	COG1853@1|root,COG1853@2|Bacteria,1MUPP@1224|Proteobacteria,2VERI@28211|Alphaproteobacteria,3JV8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	MA20_21390	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
SX3_k127_1336745_10	596151.DesfrDRAFT_2022	1.649e-66	235.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,42M9C@68525|delta/epsilon subdivisions,2WJ75@28221|Deltaproteobacteria,2M8GA@213115|Desulfovibrionales	28221|Deltaproteobacteria	E	PFAM ABC transporter related	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_1336745_17	747365.Thena_0135	5.254e-31	137.0	COG0411@1|root,COG0411@2|Bacteria,1TR0P@1239|Firmicutes,2490B@186801|Clostridia,42FCE@68295|Thermoanaerobacterales	186801|Clostridia	E	PFAM ABC transporter related	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_1336745_1	1037409.BJ6T_30250	6.595e-160	514.0	COG3547@1|root,COG3547@2|Bacteria,1MUER@1224|Proteobacteria,2TSGZ@28211|Alphaproteobacteria,3JUDN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	IS116 IS110 IS902 family	-	-	-	-	-	-	-	-	-	-	-	-	DEDD_Tnp_IS110,Transposase_20
SX3_k127_1336745_7	883078.HMPREF9695_00025	5.386e-86	294.0	COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,2TU56@28211|Alphaproteobacteria,3JZ5C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	-	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_1336745_5	1038866.KB902783_gene5968	1.112e-92	307.0	COG4959@1|root,COG4959@2|Bacteria,1MV1E@1224|Proteobacteria,2TV10@28211|Alphaproteobacteria,3JW20@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OU	Signal peptidase, peptidase S26	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S26
SX3_k127_1336745_4	1038860.AXAP01000070_gene8549	2.229e-94	312.0	2BYDP@1|root,2Z7UG@2|Bacteria,1P8PK@1224|Proteobacteria,2U09C@28211|Alphaproteobacteria,3JSV4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2840)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2840
SX3_k127_1336745_0	709797.CSIRO_0105	4.049e-174	548.0	COG5534@1|root,COG5534@2|Bacteria,1MXQ0@1224|Proteobacteria,2TRBV@28211|Alphaproteobacteria,3JSIT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	PFAM Replication initiator protein A	-	-	-	-	-	-	-	-	-	-	-	-	RPA
SX3_k127_1336745_13	1230476.C207_00031	1.092e-43	161.0	COG3311@1|root,COG3311@2|Bacteria,1RGX4@1224|Proteobacteria,2UBWS@28211|Alphaproteobacteria,3JZJN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_17
SX3_k127_1336745_8	1038866.KB902783_gene5964	8.136e-78	265.0	COG5419@1|root,COG5419@2|Bacteria,1RM1S@1224|Proteobacteria,2U0UD@28211|Alphaproteobacteria,3JYDX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized conserved protein (DUF2285)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2285
SX3_k127_1336745_15	883078.HMPREF9695_00019	9.426e-33	129.0	2AJD2@1|root,319YH@2|Bacteria,1Q4FS@1224|Proteobacteria,2V6H6@28211|Alphaproteobacteria,3K1XQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1336745_12	319003.Bra1253DRAFT_02687	6.634e-45	164.0	2E4AR@1|root,32Z6E@2|Bacteria,1MZRK@1224|Proteobacteria,2UC71@28211|Alphaproteobacteria,3K01P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized conserved protein (DUF2285)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2285
SX3_k127_1336745_14	1040989.AWZU01000045_gene6388	1.086e-36	139.0	COG1396@1|root,COG1396@2|Bacteria,1QV34@1224|Proteobacteria,2TW9R@28211|Alphaproteobacteria,3K6V4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
SX3_k127_1336745_18	1038867.AXAY01000015_gene6911	8.468e-30	118.0	COG5489@1|root,COG5489@2|Bacteria,1RDDE@1224|Proteobacteria,2U6ZR@28211|Alphaproteobacteria,3K1GX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_1342758_16	1297865.APJD01000011_gene6833	3.908e-56	199.0	COG5000@1|root,COG5001@1|root,COG5000@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JTV0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	4HB_MCP_1,EAL,GGDEF,HAMP,MHYT,PAS,PAS_3,PAS_7,PAS_8,dCache_1
SX3_k127_1342758_11	1297865.APJD01000011_gene6832	8.224e-72	243.0	COG3794@1|root,COG3794@2|Bacteria,1RE6B@1224|Proteobacteria,2UAER@28211|Alphaproteobacteria,3JZ39@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	PFAM blue (type 1) copper domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Copper-bind,Cupredoxin_1
SX3_k127_1342758_3	1297865.APJD01000011_gene6831	1.402e-210	657.0	COG3544@1|root,COG3544@2|Bacteria,1QBQI@1224|Proteobacteria,2TSAX@28211|Alphaproteobacteria,3JSRT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1342758_18	1230476.C207_02516	7.309e-13	70.0	2BJ3F@1|root,32DCC@2|Bacteria,1NM40@1224|Proteobacteria,2UK4Z@28211|Alphaproteobacteria,3K248@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1342758_2	1297865.APJD01000011_gene6829	2.08e-225	700.0	COG1858@1|root,COG1858@2|Bacteria,1MV70@1224|Proteobacteria,2TRTJ@28211|Alphaproteobacteria,3JTMC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Di-haem cytochrome c peroxidase	-	-	1.11.1.5	ko:K00428	-	-	-	-	ko00000,ko01000	-	-	-	CCP_MauG,Cytochrom_C
SX3_k127_1342758_1	1297865.APJD01000011_gene6828	0.0	1079.0	COG3614@1|root,COG3920@1|root,COG3614@2|Bacteria,COG3920@2|Bacteria,1MXU8@1224|Proteobacteria,2TSGK@28211|Alphaproteobacteria,3JRZE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	MA20_18310	-	-	-	-	-	-	-	-	-	-	-	CHASE,HWE_HK,PAS
SX3_k127_1342758_6	1230476.C207_03019	4.631e-150	475.0	COG0378@1|root,COG0378@2|Bacteria,1MVBD@1224|Proteobacteria,2TQMU@28211|Alphaproteobacteria,3JSA5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KO	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG	ureG	-	-	ko:K03189	-	-	-	-	ko00000	-	-	-	cobW
SX3_k127_1342758_7	1297865.APJD01000011_gene6826	1.44e-148	475.0	COG0830@1|root,COG0830@2|Bacteria,1MW8Q@1224|Proteobacteria,2TRVW@28211|Alphaproteobacteria,3JSYT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter	ureF	-	-	ko:K03188	-	-	-	-	ko00000	-	-	-	UreF
SX3_k127_1342758_10	652103.Rpdx1_1691	2.543e-79	269.0	COG2371@1|root,COG2371@2|Bacteria,1MZQZ@1224|Proteobacteria,2TVBW@28211|Alphaproteobacteria,3JRXK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly	ureE	-	-	ko:K03187	-	-	-	-	ko00000	-	-	-	UreE_C,UreE_N
SX3_k127_1342758_12	1297865.APJD01000011_gene6824	1.453e-62	215.0	COG1359@1|root,COG1359@2|Bacteria,1NGPW@1224|Proteobacteria,2VGJ5@28211|Alphaproteobacteria,3K6BC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_1342758_14	1297865.APJD01000011_gene6823	3.982e-58	203.0	COG1359@1|root,COG1359@2|Bacteria,1NGPW@1224|Proteobacteria,2U9QJ@28211|Alphaproteobacteria,3JZIW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	MA20_18330	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_1342758_0	1297865.APJD01000011_gene6822	0.0	1156.0	COG0804@1|root,COG0804@2|Bacteria,1MU5P@1224|Proteobacteria,2TSXP@28211|Alphaproteobacteria,3JSTP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family	ureC	-	3.5.1.5	ko:K01428	ko00220,ko00230,ko00791,ko01100,ko01120,ko05120,map00220,map00230,map00791,map01100,map01120,map05120	-	R00131	RC02798,RC02806	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Urease_alpha
SX3_k127_1342758_9	1297865.APJD01000011_gene6821	1.127e-100	331.0	COG0317@1|root,COG0317@2|Bacteria,1RGUA@1224|Proteobacteria,2U05J@28211|Alphaproteobacteria,3JT6M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	HD domain	-	-	2.7.6.5,3.1.7.2	ko:K01139	ko00230,map00230	-	R00336,R00429	RC00002,RC00078	ko00000,ko00001,ko01000,ko03009	-	-	-	HD_4
SX3_k127_1342758_13	1297865.APJD01000011_gene6820	5.302e-61	210.0	COG0832@1|root,COG0832@2|Bacteria,1RGW0@1224|Proteobacteria,2U9T4@28211|Alphaproteobacteria,3JYUT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the urease beta subunit family	ureB	-	3.5.1.5	ko:K01429	ko00220,ko00230,ko00791,ko01100,ko01120,map00220,map00230,map00791,map01100,map01120	-	R00131	RC02798,RC02806	ko00000,ko00001,ko01000	-	-	-	Urease_beta
SX3_k127_1342758_15	1230476.C207_03027	6.221e-57	200.0	COG0831@1|root,COG0831@2|Bacteria,1RGXE@1224|Proteobacteria,2U947@28211|Alphaproteobacteria,3JZJV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the urease gamma subunit family	ureA	-	3.5.1.5	ko:K01430,ko:K14048	ko00220,ko00230,ko00791,ko01100,ko01120,ko05120,map00220,map00230,map00791,map01100,map01120,map05120	-	R00131	RC02798,RC02806	ko00000,ko00001,ko01000	-	-	-	Urease_beta,Urease_gamma
SX3_k127_1342758_4	1297865.APJD01000011_gene6818	1.221e-171	540.0	COG0829@1|root,COG0829@2|Bacteria,1RABD@1224|Proteobacteria,2U57R@28211|Alphaproteobacteria,3JVJT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter	ureD	-	-	ko:K03190	-	-	-	-	ko00000	-	-	-	UreD
SX3_k127_1342758_8	1297865.APJD01000011_gene6817	1.95e-147	467.0	COG0410@1|root,COG0410@2|Bacteria,1MU4Z@1224|Proteobacteria,2TS23@28211|Alphaproteobacteria,3JSG8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	urtE	-	-	ko:K11963	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran
SX3_k127_1342758_5	1297865.APJD01000011_gene6816	3.331e-160	507.0	COG4674@1|root,COG4674@2|Bacteria,1MUBR@1224|Proteobacteria,2TQVJ@28211|Alphaproteobacteria,3JVGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Branched-chain amino acid ATP-binding cassette transporter	urtD	-	-	ko:K11962	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_1342758_17	1297865.APJD01000011_gene6815	2.797e-16	78.0	COG4177@1|root,COG4177@2|Bacteria,1MUPI@1224|Proteobacteria,2TTN2@28211|Alphaproteobacteria,3JRRF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	urtC	-	-	ko:K11961	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
SX3_k127_1346200_1	1297865.APJD01000022_gene331	1.899e-168	531.0	2A52X@1|root,30TRD@2|Bacteria,1MXQZ@1224|Proteobacteria,2U25V@28211|Alphaproteobacteria,3JX1E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1346200_3	1297865.APJD01000022_gene332	1.533e-117	381.0	COG0457@1|root,COG0457@2|Bacteria,1R80G@1224|Proteobacteria,2U19K@28211|Alphaproteobacteria,3JRTD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_11,TPR_2,TPR_8
SX3_k127_1346200_6	1297865.APJD01000022_gene333	4.066e-49	177.0	COG0828@1|root,COG0828@2|Bacteria,1MZA1@1224|Proteobacteria,2UC58@28211|Alphaproteobacteria,3JZDH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bS21 family	rpsU	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904	-	ko:K02970	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S21
SX3_k127_1346200_2	1297865.APJD01000022_gene334	2.433e-150	476.0	COG0580@1|root,COG0580@2|Bacteria,1MXTJ@1224|Proteobacteria,2TRGG@28211|Alphaproteobacteria,3JQPT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity	aqpZ	-	-	ko:K06188	-	-	-	-	ko00000,ko02000	1.A.8	-	-	MIP
SX3_k127_1346200_0	1297865.APJD01000022_gene335	4.698e-230	722.0	COG0026@1|root,COG0026@2|Bacteria,1MU70@1224|Proteobacteria,2TRSV@28211|Alphaproteobacteria,3JR4N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)	purK	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	6.3.4.18	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07404	RC01927	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp
SX3_k127_1346200_5	1297865.APJD01000022_gene336	2.124e-93	308.0	COG0041@1|root,COG0041@2|Bacteria,1RCWJ@1224|Proteobacteria,2U58D@28211|Alphaproteobacteria,3JU0Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)	purE	-	5.4.99.18	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R07405	RC01947	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRC
SX3_k127_1346200_4	398525.KB900701_gene322	4.747e-117	381.0	COG2199@1|root,COG2199@2|Bacteria,1Q7FU@1224|Proteobacteria,2TRE7@28211|Alphaproteobacteria,3JTVT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF
SX3_k127_1346200_7	1297865.APJD01000022_gene338	3.681e-39	145.0	2EHU7@1|root,33BJV@2|Bacteria,1N0GN@1224|Proteobacteria,2UD2K@28211|Alphaproteobacteria,3K01J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_03750	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1348327_6	1197906.CAJQ02000056_gene3680	9.887e-44	160.0	28WAF@1|root,2ZIAY@2|Bacteria,1R22W@1224|Proteobacteria,2TZ9J@28211|Alphaproteobacteria,3K70Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3991)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3991,Toprim_2
SX3_k127_1348327_0	452662.SJA_C1-04160	2.103e-235	743.0	COG2203@1|root,COG5001@1|root,COG2203@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,2K1GG@204457|Sphingomonadales	204457|Sphingomonadales	T	GAF domain	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GAF_2,GGDEF
SX3_k127_1348327_5	883080.HMPREF9697_03979	1.64e-104	342.0	COG3916@1|root,COG3916@2|Bacteria,1MXFA@1224|Proteobacteria,2U30F@28211|Alphaproteobacteria,3JSIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	QT	Autoinducer	mrlI	-	2.3.1.228,2.3.1.229	ko:K18096	ko02024,map02024	-	-	-	ko00000,ko00001,ko01000	-	-	-	Autoind_synth
SX3_k127_1348327_7	1197906.CAJQ02000056_gene3677	7.099e-41	156.0	2ACIH@1|root,3124N@2|Bacteria,1N2YU@1224|Proteobacteria,2UDS3@28211|Alphaproteobacteria,3K0HW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1348327_4	224914.BMEII1016	1.189e-128	413.0	COG0693@1|root,COG0693@2|Bacteria,1MVTT@1224|Proteobacteria,2TT0C@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	intracellular protease amidase	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI
SX3_k127_1348327_1	1224136.AMFN01000022_gene2052	9.103e-165	527.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,1RMFE@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Alpha beta hydrolase	cpo	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
SX3_k127_1348327_3	1218076.BAYB01000029_gene4818	1.354e-131	426.0	arCOG09106@1|root,2Z9A1@2|Bacteria,1MXNU@1224|Proteobacteria,2W1UZ@28216|Betaproteobacteria,1K5JZ@119060|Burkholderiaceae	28216|Betaproteobacteria	S	acetoacetate decarboxylase	-	-	-	-	-	-	-	-	-	-	-	-	ADC
SX3_k127_1348327_2	224914.BMEII1018	1.077e-162	516.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	NADH flavin oxidoreductase NADH oxidase	-	-	1.5.8.1,1.5.8.2	ko:K00317	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R01588,R02511	RC00185,RC00556,RC00557,RC00732	ko00000,ko00001,ko01000	-	-	-	Oxidored_FMN,Pyr_redox_2
SX3_k127_1349896_3	1297865.APJD01000007_gene1951	2.455e-211	657.0	COG5459@1|root,COG5459@2|Bacteria,1MWMM@1224|Proteobacteria,2TQX8@28211|Alphaproteobacteria,3JT6V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Mitochondrial small ribosomal subunit Rsm22	-	-	-	-	-	-	-	-	-	-	-	-	Rsm22
SX3_k127_1349896_0	1297865.APJD01000007_gene1952	0.0	2104.0	COG1196@1|root,COG1196@2|Bacteria,1MUAQ@1224|Proteobacteria,2TRQG@28211|Alphaproteobacteria,3JUPU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Required for chromosome condensation and partitioning	smc	-	-	ko:K03529	-	-	-	-	ko00000,ko03036	-	-	-	SMC_N
SX3_k127_1349896_8	1297865.APJD01000007_gene1953	8.855e-31	121.0	COG1651@1|root,COG1651@2|Bacteria,1RFF4@1224|Proteobacteria,2U5BN@28211|Alphaproteobacteria,3JS38@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Thioredoxin	MA20_42440	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin_4
SX3_k127_1349896_5	1297865.APJD01000007_gene1953	3.188e-100	332.0	COG1651@1|root,COG1651@2|Bacteria,1RFF4@1224|Proteobacteria,2U5BN@28211|Alphaproteobacteria,3JS38@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Thioredoxin	MA20_42440	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin_4
SX3_k127_1349896_6	1297865.APJD01000007_gene1954	5.915e-94	314.0	COG5389@1|root,COG5389@2|Bacteria,1N82D@1224|Proteobacteria,2UFA9@28211|Alphaproteobacteria,3JY8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF721)	MA20_42435	-	-	-	-	-	-	-	-	-	-	-	DUF721
SX3_k127_1349896_2	1297865.APJD01000007_gene1955	5.211e-236	730.0	COG1194@1|root,COG1194@2|Bacteria,1MUD4@1224|Proteobacteria,2TQVX@28211|Alphaproteobacteria,3JQMI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	FES	mutY	GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360	-	ko:K03575	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	EndIII_4Fe-2S,HhH-GPD,NUDIX_4
SX3_k127_1349896_7	1297865.APJD01000007_gene1956	6.267e-83	277.0	COG2050@1|root,COG2050@2|Bacteria,1RBET@1224|Proteobacteria,2U5TM@28211|Alphaproteobacteria,3JY4D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	MA20_42425	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_1349896_1	1297865.APJD01000007_gene1957	2.735e-294	904.0	COG0654@1|root,COG0654@2|Bacteria,1MXEW@1224|Proteobacteria,2TRRC@28211|Alphaproteobacteria,3JV1F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_42420	-	1.14.13.218	ko:K20940	ko00405,ko01130,map00405,map01130	M00835	-	-	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_1349896_4	1297865.APJD01000007_gene1958	4.834e-134	428.0	COG0625@1|root,COG0625@2|Bacteria,1MWUG@1224|Proteobacteria,2TTZ6@28211|Alphaproteobacteria,3JSTS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the GST superfamily	gstB	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_3,GST_N
SX3_k127_1361477_2	172088.AUGA01000101_gene4396	5.661e-23	99.0	COG1089@1|root,COG1089@2|Bacteria,1MUX0@1224|Proteobacteria,2TR8G@28211|Alphaproteobacteria,3JSHE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose	gmd	-	4.2.1.47	ko:K01711	ko00051,ko00520,ko01100,map00051,map00520,map01100	-	R00888	RC00402	ko00000,ko00001,ko01000	-	-	-	GDP_Man_Dehyd
SX3_k127_1361477_0	1297865.APJD01000044_gene6891	2.436e-233	723.0	COG0673@1|root,COG0673@2|Bacteria,1MUP0@1224|Proteobacteria,2VF2U@28211|Alphaproteobacteria,3JVEI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase family, C-terminal alpha/beta domain	-	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
SX3_k127_1361477_1	1297865.APJD01000044_gene6892	5.335e-95	321.0	COG1045@1|root,COG1045@2|Bacteria,1QWJD@1224|Proteobacteria,2TWZD@28211|Alphaproteobacteria,3JYB2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Hexapeptide repeat of succinyl-transferase	-	-	-	-	-	-	-	-	-	-	-	-	Hexapep,Hexapep_2
SX3_k127_1361477_3	398525.KB900701_gene6287	1.578e-09	58.0	COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,2TRIQ@28211|Alphaproteobacteria,3JU8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the DegT DnrJ EryC1 family	-	-	-	-	-	-	-	-	-	-	-	-	DegT_DnrJ_EryC1
SX3_k127_1373824_0	1297865.APJD01000015_gene3438	0.0	1498.0	COG2373@1|root,COG3210@1|root,COG4932@1|root,COG2373@2|Bacteria,COG3210@2|Bacteria,COG4932@2|Bacteria,1QUUN@1224|Proteobacteria,2TX9V@28211|Alphaproteobacteria,3K64F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Bacterial Ig-like domain (group 3)	-	-	-	-	-	-	-	-	-	-	-	-	Big_3_3,PATR
SX3_k127_1373824_3	1297865.APJD01000015_gene3439	8.419e-254	784.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3JU7H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	MA20_40040	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1373824_8	1297865.APJD01000015_gene3440	6.001e-164	517.0	COG1024@1|root,COG1024@2|Bacteria,1MVQN@1224|Proteobacteria,2U31Y@28211|Alphaproteobacteria,3JRTV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	MA20_40045	-	5.3.3.18	ko:K15866	ko00360,ko01120,map00360,map01120	-	R09837,R09839	RC00004,RC00326,RC02689,RC03003	ko00000,ko00001,ko01000	-	-	-	ECH_1
SX3_k127_1373824_7	1297865.APJD01000015_gene3441	8.705e-166	521.0	COG0346@1|root,COG0346@2|Bacteria,1MW8Z@1224|Proteobacteria,2TS64@28211|Alphaproteobacteria,3JRWG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	lactoylglutathione lyase activity	MA20_40050	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase_3
SX3_k127_1373824_1	1297865.APJD01000015_gene3442	0.0	1344.0	COG0045@1|root,COG1042@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2TR24@28211|Alphaproteobacteria,3JRT1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA binding domain	-	-	-	-	-	-	-	-	-	-	-	-	ATP-grasp_5,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
SX3_k127_1373824_6	1297865.APJD01000015_gene3443	1.333e-169	533.0	COG1024@1|root,COG1024@2|Bacteria,1MWGT@1224|Proteobacteria,2TV7F@28211|Alphaproteobacteria,3JU1Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	MA20_40055	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_1373824_2	1297865.APJD01000015_gene3444	1.97e-257	794.0	COG1960@1|root,COG1960@2|Bacteria,1MW0F@1224|Proteobacteria,2TR9I@28211|Alphaproteobacteria,3JUIJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_40060	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_1373824_4	1297865.APJD01000015_gene3445	1e-223	695.0	COG1960@1|root,COG1960@2|Bacteria,1NQAE@1224|Proteobacteria,2U0TJ@28211|Alphaproteobacteria,3JTKC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_40065	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_N
SX3_k127_1373824_5	1297865.APJD01000015_gene3446	1.808e-176	556.0	COG1414@1|root,COG1414@2|Bacteria,1RFSY@1224|Proteobacteria,2U3M4@28211|Alphaproteobacteria,3JZH2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	IclR helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR,IclR
SX3_k127_1373824_9	398525.KB900701_gene1129	5.817e-29	115.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria,3JTE3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_FMN
SX3_k127_1421673_11	1297865.APJD01000009_gene2856	7.997e-116	374.0	COG0323@1|root,COG0323@2|Bacteria,1MV61@1224|Proteobacteria,2TR2M@28211|Alphaproteobacteria,3JT55@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	mutL	GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391	-	ko:K03572	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	DNA_mis_repair,HATPase_c_3,MutL_C
SX3_k127_1421673_17	1297865.APJD01000009_gene2855	3.364e-65	228.0	COG4321@1|root,COG4321@2|Bacteria,1MZP2@1224|Proteobacteria,2UBZU@28211|Alphaproteobacteria,3JZPJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ribbon-helix-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	RHH_4
SX3_k127_1421673_5	1297865.APJD01000009_gene2854	1.094e-266	827.0	COG1309@1|root,COG1309@2|Bacteria,1R7F8@1224|Proteobacteria,2U0DG@28211|Alphaproteobacteria,3JV70@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1421673_7	1297865.APJD01000009_gene2853	8.431e-210	652.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,3JVB6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the ABC transporter superfamily	oppF	-	-	ko:K02032,ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	ABC_tran,oligo_HPY
SX3_k127_1421673_6	1297865.APJD01000009_gene2852	8.235e-218	677.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,3JRF7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Oligopeptide/dipeptide transporter, C-terminal region	-	-	-	ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	ABC_tran,oligo_HPY
SX3_k127_1421673_1	1297865.APJD01000009_gene2851	0.0	1135.0	COG0747@1|root,COG0747@2|Bacteria,1PFW6@1224|Proteobacteria,2U1GT@28211|Alphaproteobacteria,3JUHW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptide ABC transporter substrate-binding protein	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_1421673_9	1297865.APJD01000009_gene2850	3.746e-183	576.0	COG1173@1|root,COG1173@2|Bacteria,1MU26@1224|Proteobacteria,2VF5U@28211|Alphaproteobacteria,3JXA1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_1421673_8	1297865.APJD01000009_gene2849	7.12e-194	606.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TR0N@28211|Alphaproteobacteria,3JUIB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_1421673_18	1297865.APJD01000009_gene2848	5.732e-21	100.0	COG4321@1|root,COG4321@2|Bacteria	2|Bacteria	O	Ribbon-helix-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	RHH_4
SX3_k127_1421673_19	224911.27352803	1.112e-08	60.0	COG1173@1|root,COG1173@2|Bacteria,1MWP1@1224|Proteobacteria,2TSUG@28211|Alphaproteobacteria,3JR90@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_13270	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_1421673_2	1297865.APJD01000009_gene2847	0.0	1086.0	COG2303@1|root,COG2303@2|Bacteria,1MU3F@1224|Proteobacteria,2TT3C@28211|Alphaproteobacteria,3JREI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N
SX3_k127_1421673_12	1297865.APJD01000009_gene2846	9.225e-116	373.0	2BXMA@1|root,2ZBQ1@2|Bacteria,1MXZ1@1224|Proteobacteria,2TUF6@28211|Alphaproteobacteria,3JT8C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	(twin-arginine translocation) pathway signal	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1421673_14	1297865.APJD01000009_gene2845	5.448e-85	281.0	COG0346@1|root,COG0346@2|Bacteria,1RI06@1224|Proteobacteria,2U77N@28211|Alphaproteobacteria,3JYGH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	lguL	-	4.4.1.5	ko:K01759	ko00620,map00620	-	R02530	RC00004,RC00740	ko00000,ko00001,ko01000	-	-	-	Glyoxalase
SX3_k127_1421673_16	1230476.C207_03509	1.495e-72	248.0	COG3474@1|root,COG3474@2|Bacteria,1RGSY@1224|Proteobacteria,2U84R@28211|Alphaproteobacteria,3JYUJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
SX3_k127_1421673_15	1297865.APJD01000009_gene2843	2.18e-77	261.0	COG1186@1|root,COG1186@2|Bacteria,1RH75@1224|Proteobacteria,2U9M7@28211|Alphaproteobacteria,3JY9E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Class I peptide chain release factor	MA20_05665	GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112	-	ko:K15034	-	-	-	-	ko00000,ko03012	-	-	-	RF-1
SX3_k127_1421673_20	1038867.AXAY01000026_gene1381	0.0005538	45.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,3JUU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337,ko:K14162	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_1421673_4	1297865.APJD01000009_gene2842	1.672e-281	893.0	COG0612@1|root,COG0612@2|Bacteria,1MU6R@1224|Proteobacteria,2TRMX@28211|Alphaproteobacteria,3JSBY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase M16 inactive domain	pqqG	-	-	ko:K07263,ko:K07623	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M16,Peptidase_M16_C
SX3_k127_1421673_3	1297865.APJD01000009_gene2841	3.54e-298	917.0	COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,2TRFB@28211|Alphaproteobacteria,3JRIY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the peptidase M16 family	pqqF	-	-	ko:K07263	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M16,Peptidase_M16_C
SX3_k127_1421673_10	1297865.APJD01000009_gene2840	4.303e-154	487.0	2AXUQ@1|root,31PVX@2|Bacteria,1R6KT@1224|Proteobacteria,2UGTF@28211|Alphaproteobacteria,3JU6Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1421673_13	1297865.APJD01000009_gene2839	2.197e-98	325.0	COG0597@1|root,COG0597@2|Bacteria,1RGV9@1224|Proteobacteria,2UBUC@28211|Alphaproteobacteria,3JT06@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	This protein specifically catalyzes the removal of signal peptides from prolipoproteins	lspA	-	3.4.23.36	ko:K03101	ko03060,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_A8
SX3_k127_1421673_0	1297865.APJD01000009_gene2838	0.0	2119.0	COG0060@1|root,COG0060@2|Bacteria,1MVBQ@1224|Proteobacteria,2TR3N@28211|Alphaproteobacteria,3JRA9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)	ileS	-	6.1.1.5	ko:K01870	ko00970,map00970	M00359,M00360	R03656	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,tRNA-synt_1,zf-FPG_IleRS
SX3_k127_142472_0	1297865.APJD01000004_gene5358	2.795e-144	457.0	COG1408@1|root,COG1408@2|Bacteria,1MUH5@1224|Proteobacteria,2TVHN@28211|Alphaproteobacteria,3JR2C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase superfamily domain	ykuE	-	-	ko:K07098	-	-	-	-	ko00000	-	-	-	Metallophos
SX3_k127_142472_3	1297865.APJD01000004_gene5357	1.069e-86	300.0	COG0824@1|root,COG0824@2|Bacteria,1MZH6@1224|Proteobacteria,2UBYM@28211|Alphaproteobacteria,3JY1I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thioesterase superfamily	ybgC	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT
SX3_k127_142472_2	1297865.APJD01000004_gene5356	1.311e-102	334.0	COG3558@1|root,COG3558@2|Bacteria,1RA64@1224|Proteobacteria,2U5FW@28211|Alphaproteobacteria,3JV5M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1348)	MA20_04335	-	-	ko:K09958	-	-	-	-	ko00000	-	-	-	DUF1348
SX3_k127_142472_1	1297865.APJD01000004_gene5355	4.247e-138	440.0	COG0625@1|root,COG0625@2|Bacteria,1MY47@1224|Proteobacteria,2U0Y3@28211|Alphaproteobacteria,3JU13@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_04130	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_142472_4	1297865.APJD01000004_gene5354	8.099e-53	187.0	COG1309@1|root,COG1309@2|Bacteria,1N2VD@1224|Proteobacteria,2U0HH@28211|Alphaproteobacteria,3JR4G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1424990_4	1297865.APJD01000005_gene3790	4.992e-222	690.0	2E5MX@1|root,330CT@2|Bacteria,1QB6R@1224|Proteobacteria,2U53Q@28211|Alphaproteobacteria,3JX8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1424990_5	1297865.APJD01000005_gene3789	4.639e-206	642.0	COG1216@1|root,COG1216@2|Bacteria,1MYS1@1224|Proteobacteria,2U2NK@28211|Alphaproteobacteria,3JVDE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
SX3_k127_1424990_0	1297865.APJD01000005_gene3788	0.0	1355.0	COG0457@1|root,COG0457@2|Bacteria,1QVTD@1224|Proteobacteria,2TWZT@28211|Alphaproteobacteria,3JWRB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Glycosyltransferase WbsX	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tran_WbsX,Methyltransf_23
SX3_k127_1424990_1	1297865.APJD01000005_gene3787	0.0	1329.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2TR2B@28211|Alphaproteobacteria,3JUW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sel1-like repeats.	-	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
SX3_k127_1424990_3	398525.KB900701_gene3815	9.096e-239	746.0	COG0845@1|root,COG0845@2|Bacteria,1MUI8@1224|Proteobacteria,2TTX9@28211|Alphaproteobacteria,3JTVD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	HlyD family secretion protein	-	-	-	ko:K02022,ko:K11003	ko03070,ko05133,map03070,map05133	M00325,M00575	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	8.A.1.3.1,8.A.1.3.2	-	-	Biotin_lipoyl_2,HlyD,HlyD_3
SX3_k127_1424990_2	1297865.APJD01000005_gene3785	0.0	1245.0	COG2274@1|root,COG2274@2|Bacteria,1R2T0@1224|Proteobacteria,2USBQ@28211|Alphaproteobacteria,3JRFR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter	-	-	-	ko:K06147,ko:K11004	ko02010,ko03070,ko05133,map02010,map03070,map05133	M00325,M00575	-	-	ko00000,ko00001,ko00002,ko02000,ko02044	3.A.1.106,3.A.1.109,3.A.1.109.1,3.A.1.109.2,3.A.1.21	-	-	ABC_membrane,ABC_tran,Peptidase_C39
SX3_k127_1481967_3	1297865.APJD01000007_gene1970	5.032e-141	449.0	COG0164@1|root,COG0164@2|Bacteria,1RA65@1224|Proteobacteria,2U73X@28211|Alphaproteobacteria,3JQUR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	rnhB	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576	3.1.26.4	ko:K03470	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	RNase_HII
SX3_k127_1481967_1	1297865.APJD01000007_gene1971	1.004e-320	985.0	COG1807@1|root,COG1807@2|Bacteria,1QA8B@1224|Proteobacteria,2TY1E@28211|Alphaproteobacteria,3JSHV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	MA20_42315	-	-	-	-	-	-	-	-	-	-	-	PMT_2
SX3_k127_1481967_2	1297865.APJD01000007_gene1972	2.604e-166	524.0	COG1573@1|root,COG1573@2|Bacteria,1MWX1@1224|Proteobacteria,2TT4Q@28211|Alphaproteobacteria,3JU3F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	UreE urease accessory protein, C-terminal domain	udgA	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
SX3_k127_1481967_0	1297865.APJD01000007_gene1973	0.0	1150.0	COG0644@1|root,COG2440@1|root,COG0644@2|Bacteria,COG2440@2|Bacteria,1MVU6@1224|Proteobacteria,2TS0R@28211|Alphaproteobacteria,3JTT9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	electron transfer	etf	GO:0003674,GO:0003824,GO:0004174,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016645,GO:0016649,GO:0016722,GO:0017133,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032592,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043783,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045251,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070013,GO:0098573,GO:0098798,GO:1902494,GO:1990204	1.5.5.1	ko:K00311	-	-	-	-	ko00000,ko01000	-	-	-	ETF_QO,FAD_binding_2,NAD_binding_8,Thi4
SX3_k127_1494131_9	1297865.APJD01000005_gene3884	8.45e-168	527.0	COG0657@1|root,COG0657@2|Bacteria,1MV3J@1224|Proteobacteria,2TUQ3@28211|Alphaproteobacteria,3JW6A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	alpha/beta hydrolase fold	-	-	3.5.1.9	ko:K01432	ko00380,ko00630,ko01100,map00380,map00630,map01100	M00038	R00988,R01959,R04911	RC00263,RC00323	ko00000,ko00001,ko00002,ko01000	-	-	-	Abhydrolase_3
SX3_k127_1494131_12	1297865.APJD01000005_gene3883	1.442e-97	321.0	COG1846@1|root,COG1846@2|Bacteria,1MZE9@1224|Proteobacteria,2TSUB@28211|Alphaproteobacteria,3JQPR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	MA20_38125	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_1494131_4	1297865.APJD01000005_gene3882	2.413e-250	779.0	COG0683@1|root,COG0683@2|Bacteria,1MVV2@1224|Proteobacteria,2TRFU@28211|Alphaproteobacteria,3JT1D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_38130	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1494131_11	1297865.APJD01000005_gene3881	1.359e-100	331.0	COG1917@1|root,COG1917@2|Bacteria,1PJ5Y@1224|Proteobacteria,2TVK5@28211|Alphaproteobacteria,3K6KQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_1494131_3	1297865.APJD01000005_gene3880	2.958e-278	855.0	COG0654@1|root,COG0654@2|Bacteria,1MXEW@1224|Proteobacteria,2TRRC@28211|Alphaproteobacteria,3JV1F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_38140	-	1.14.13.218	ko:K20940	ko00405,ko01130,map00405,map01130	M00835	-	-	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_1494131_13	1297865.APJD01000005_gene3879	8.576e-78	261.0	COG0251@1|root,COG0251@2|Bacteria,1RHSP@1224|Proteobacteria,2U9A9@28211|Alphaproteobacteria,3JYDU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	-	-	3.5.99.10	ko:K09022	-	-	R11098,R11099	RC03275,RC03354	ko00000,ko01000	-	-	-	Ribonuc_L-PSP
SX3_k127_1494131_8	1297865.APJD01000005_gene3878	3.167e-178	573.0	COG1024@1|root,COG1024@2|Bacteria,1MXHV@1224|Proteobacteria,2TTEG@28211|Alphaproteobacteria,3JVV9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_38145	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_1494131_10	1297865.APJD01000005_gene3877	8.392e-151	484.0	COG1028@1|root,COG1028@2|Bacteria,1MUS7@1224|Proteobacteria,2TTYG@28211|Alphaproteobacteria,3JVR1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	bdh	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
SX3_k127_1494131_0	1297865.APJD01000005_gene3876	0.0	1603.0	COG0654@1|root,COG1902@1|root,COG0654@2|Bacteria,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria,3JRQ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	1.14.13.40	ko:K09461	ko00627,ko01120,map00627,map01120	-	R03998,R03999	RC00244	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3,NAD_binding_8,Oxidored_FMN
SX3_k127_1494131_2	1297865.APJD01000005_gene3875	0.0	1005.0	COG1129@1|root,COG1129@2|Bacteria,1MU22@1224|Proteobacteria,2TQJV@28211|Alphaproteobacteria,3JQYV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	ABC transporter	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
SX3_k127_1494131_5	1297865.APJD01000005_gene3874	1.604e-247	773.0	COG3386@1|root,COG3386@2|Bacteria,1R64I@1224|Proteobacteria,2U1AR@28211|Alphaproteobacteria,3JWWS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PFAM SMP-30 Gluconolaconase	-	-	-	-	-	-	-	-	-	-	-	-	SGL,Str_synth
SX3_k127_1494131_1	1230476.C207_01880	0.0	1444.0	COG1172@1|root,COG3386@1|root,COG1172@2|Bacteria,COG3386@2|Bacteria,1MX7V@1224|Proteobacteria,2U1AZ@28211|Alphaproteobacteria,3JRP9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Strictosidine synthase	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_2,SGL,Str_synth
SX3_k127_1494131_6	1297865.APJD01000005_gene3872	9.458e-224	698.0	COG1879@1|root,COG1879@2|Bacteria,1Q3KM@1224|Proteobacteria,2TVRK@28211|Alphaproteobacteria,3JUVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_4
SX3_k127_1494131_7	1230476.C207_01878	4.138e-201	628.0	COG1172@1|root,COG1172@2|Bacteria,1MX7D@1224|Proteobacteria,2TRYA@28211|Alphaproteobacteria,3JVTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Branched-chain amino acid transport system / permease component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_2
SX3_k127_1494131_14	1297865.APJD01000005_gene3870	8.871e-70	237.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2TRAK@28211|Alphaproteobacteria,3JXH0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1503033_12	883078.HMPREF9695_01240	6.066e-07	51.0	COG2242@1|root,COG2242@2|Bacteria,1R3Z5@1224|Proteobacteria,2TT0M@28211|Alphaproteobacteria,3JT0E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
SX3_k127_1503033_10	883080.HMPREF9697_00919	2.011e-11	68.0	COG2116@1|root,COG2116@2|Bacteria,1MU0W@1224|Proteobacteria,2TTIW@28211|Alphaproteobacteria,3JWT4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Formate/nitrite transporter	-	-	-	ko:K21993	-	-	-	-	ko00000,ko02000	1.A.16.2	-	-	Form_Nir_trans
SX3_k127_1503033_11	883080.HMPREF9697_00919	5.274e-07	57.0	COG2116@1|root,COG2116@2|Bacteria,1MU0W@1224|Proteobacteria,2TTIW@28211|Alphaproteobacteria,3JWT4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Formate/nitrite transporter	-	-	-	ko:K21993	-	-	-	-	ko00000,ko02000	1.A.16.2	-	-	Form_Nir_trans
SX3_k127_1503033_0	883080.HMPREF9697_00918	0.0	1447.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,3JQNW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPase, P-type (transporting), HAD superfamily, subfamily IC	-	-	3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016	-	R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5	-	-	E1-E2_ATPase,Hydrolase,YHS
SX3_k127_1503033_9	666684.AfiDRAFT_0909	4.342e-49	175.0	COG1937@1|root,COG1937@2|Bacteria,1N9P2@1224|Proteobacteria,2UF3F@28211|Alphaproteobacteria,3JZE7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal-sensitive transcriptional repressor	MA20_24475	-	-	ko:K21600	-	-	-	-	ko00000,ko03000	-	-	-	Trns_repr_metal
SX3_k127_1503033_4	1297863.APJF01000028_gene1348	6.348e-86	286.0	2A7K7@1|root,30WI5@2|Bacteria,1RE4P@1224|Proteobacteria,2U7FN@28211|Alphaproteobacteria,3JYT8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1503033_8	323097.Nham_4383	3.803e-49	178.0	2BK15@1|root,32EEB@2|Bacteria,1N9Y3@1224|Proteobacteria,2UF5J@28211|Alphaproteobacteria,3K1H3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1503033_2	504832.OCAR_7633	2.314e-286	882.0	COG1538@1|root,COG1538@2|Bacteria,1MWB0@1224|Proteobacteria,2TTSE@28211|Alphaproteobacteria,3JV4F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	copB	-	-	-	-	-	-	-	-	-	-	-	OEP
SX3_k127_1503033_1	666684.AfiDRAFT_0905	4.311e-295	908.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2TUTX@28211|Alphaproteobacteria,3JSM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Multicopper oxidase	MA20_09720	-	1.16.3.3	ko:K22348	-	-	-	-	ko00000,ko01000	-	-	-	Cu-oxidase_2,Cu-oxidase_3
SX3_k127_1503033_5	323097.Nham_4387	2.901e-82	279.0	COG2010@1|root,COG2010@2|Bacteria,1MW1W@1224|Proteobacteria,2TVSN@28211|Alphaproteobacteria,3JXI2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C,Cytochrome_CBB3
SX3_k127_1503033_3	666684.AfiDRAFT_0903	6.439e-231	719.0	COG2348@1|root,COG2348@2|Bacteria,1RAT2@1224|Proteobacteria,2U696@28211|Alphaproteobacteria,3JZ2E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	FemAB family	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_6
SX3_k127_1503033_7	666684.AfiDRAFT_0902	3.723e-53	188.0	COG5569@1|root,COG5569@2|Bacteria,1N8CJ@1224|Proteobacteria,2U9SU@28211|Alphaproteobacteria,3JZKA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Copper binding periplasmic protein CusF	-	-	-	-	-	-	-	-	-	-	-	-	CusF_Ec,DUF305
SX3_k127_1503033_6	666684.AfiDRAFT_0901	5.501e-79	265.0	COG2520@1|root,COG2520@2|Bacteria,1QW8N@1224|Proteobacteria,2TWT2@28211|Alphaproteobacteria,3K6NV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
SX3_k127_1503309_2	1297865.APJD01000005_gene3768	0.0	1106.0	COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,1MVI9@1224|Proteobacteria,2TT1Y@28211|Alphaproteobacteria,3JRJB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K16554	ko05111,map05111	-	-	-	ko00000,ko00001,ko02000	8.A.3.1	-	-	AAA_31,GNVR,Wzz
SX3_k127_1503309_10	1297865.APJD01000005_gene3769	6.952e-163	513.0	COG0500@1|root,COG0500@2|Bacteria,1R7BN@1224|Proteobacteria,2U50R@28211|Alphaproteobacteria,3JUW7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Nodulation protein S (NodS)	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
SX3_k127_1503309_8	1297865.APJD01000005_gene3770	1.532e-253	781.0	COG0438@1|root,COG0438@2|Bacteria,1R4NX@1224|Proteobacteria,2U1EN@28211|Alphaproteobacteria,3JXK2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glycos_transf_1
SX3_k127_1503309_3	1297865.APJD01000005_gene3771	4.233e-283	873.0	COG3307@1|root,COG3307@2|Bacteria,1R9A7@1224|Proteobacteria,2TR72@28211|Alphaproteobacteria,3JW41@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	O-Antigen ligase	-	-	-	-	-	-	-	-	-	-	-	-	Wzy_C
SX3_k127_1503309_7	1297865.APJD01000005_gene3772	3.729e-262	810.0	COG2244@1|root,COG2244@2|Bacteria,1R4N2@1224|Proteobacteria,2TVGI@28211|Alphaproteobacteria,3JW34@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	polysaccharide biosynthetic process	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1503309_12	1297865.APJD01000005_gene3773	4.811e-136	437.0	COG4627@1|root,COG4627@2|Bacteria,1NKXY@1224|Proteobacteria,2UJD3@28211|Alphaproteobacteria,3JUR8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
SX3_k127_1503309_13	398525.KB900701_gene3804	9.577e-130	421.0	COG0500@1|root,COG2226@2|Bacteria,1RF1C@1224|Proteobacteria,2U86S@28211|Alphaproteobacteria,3JXW1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_1503309_11	1297865.APJD01000005_gene3775	3.122e-150	479.0	COG2227@1|root,COG2227@2|Bacteria,1QBZK@1224|Proteobacteria,2U444@28211|Alphaproteobacteria,3JWUX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Nodulation protein S (NodS)	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_1503309_4	1297865.APJD01000005_gene3776	3.595e-282	874.0	COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,2TREV@28211|Alphaproteobacteria,3JW49@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	UDP binding domain	-	-	1.1.1.132	ko:K00066	ko00051,ko00520,ko02020,map00051,map00520,map02020	-	R00880	RC00291	ko00000,ko00001,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
SX3_k127_1503309_6	1297865.APJD01000005_gene3777	4.076e-274	844.0	COG0438@1|root,COG0438@2|Bacteria,1PDZE@1224|Proteobacteria,2TR1N@28211|Alphaproteobacteria,3JVFV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_2,Glyco_trans_4_4
SX3_k127_1503309_5	1297865.APJD01000005_gene3778	1.229e-274	844.0	COG3664@1|root,COG3664@2|Bacteria,1MX9Q@1224|Proteobacteria,2TWU2@28211|Alphaproteobacteria,3JXZ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glycosyl hydrolase catalytic core	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_cc
SX3_k127_1503309_0	1297865.APJD01000005_gene3779	0.0	1423.0	COG0673@1|root,COG1063@1|root,COG0673@2|Bacteria,COG1063@2|Bacteria,1PS9M@1224|Proteobacteria,2V4GN@28211|Alphaproteobacteria,3JWNE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	inositol 2-dehydrogenase activity	-	-	-	-	-	-	-	-	-	-	-	-	ADH_zinc_N,GFO_IDH_MocA
SX3_k127_1503309_1	1297865.APJD01000005_gene3780	0.0	1403.0	COG5360@1|root,COG5360@2|Bacteria,1MZ5X@1224|Proteobacteria,2TVDH@28211|Alphaproteobacteria,3JXJC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Heparinase II/III N-terminus	-	-	-	-	-	-	-	-	-	-	-	-	Hepar_II_III,Hepar_II_III_N
SX3_k127_1503309_9	1297865.APJD01000005_gene3781	7.658e-248	767.0	COG0438@1|root,COG0438@2|Bacteria,1NB81@1224|Proteobacteria,2U3N3@28211|Alphaproteobacteria,3JX7E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyltransferase Family 4	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_1524819_13	1297865.APJD01000014_gene484	2.393e-98	321.0	COG1409@1|root,COG1409@2|Bacteria,1QI4K@1224|Proteobacteria,2TV5Q@28211|Alphaproteobacteria,3JSSF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos
SX3_k127_1524819_16	1297865.APJD01000014_gene485	1.642e-45	169.0	2AINI@1|root,3194Y@2|Bacteria,1N060@1224|Proteobacteria,2UC4S@28211|Alphaproteobacteria,3K074@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1524819_6	1297865.APJD01000014_gene486	2.727e-225	703.0	COG2130@1|root,COG2130@2|Bacteria,1MUC2@1224|Proteobacteria,2TQYM@28211|Alphaproteobacteria,3JRF5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	N-terminal domain of oxidoreductase	MA20_27525	-	1.1.1.1	ko:K00001,ko:K07119	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N_2,ADH_zinc_N
SX3_k127_1524819_2	1230476.C207_06586	1.082e-317	974.0	COG0516@1|root,COG0517@1|root,COG0516@2|Bacteria,COG0517@2|Bacteria,1MUJM@1224|Proteobacteria,2TQXC@28211|Alphaproteobacteria,3JSB9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth	guaB	GO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	1.1.1.205,1.7.1.7	ko:K00088,ko:K00364	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	M00050	R01130,R01134,R08240	RC00143,RC00457,RC02207	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	CBS,IMPDH,NMO
SX3_k127_1524819_15	1297865.APJD01000014_gene488	1.025e-50	180.0	2DSYX@1|root,33HZJ@2|Bacteria,1N1YP@1224|Proteobacteria,2UCIJ@28211|Alphaproteobacteria,3K06M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1524819_3	1230476.C207_06584	4.115e-304	935.0	COG0477@1|root,COG0477@2|Bacteria,1QTWJ@1224|Proteobacteria,2TVYQ@28211|Alphaproteobacteria,3JT2H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_27515	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1524819_17	113395.AXAI01000007_gene1224	9.076e-37	143.0	COG2329@1|root,COG2329@2|Bacteria,1Q4HA@1224|Proteobacteria,2UN5H@28211|Alphaproteobacteria,3K6BI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_1524819_8	1297865.APJD01000014_gene491	7.877e-193	602.0	COG0583@1|root,COG0583@2|Bacteria,1R7M1@1224|Proteobacteria,2VF1J@28211|Alphaproteobacteria,3K2IV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1524819_11	1297865.APJD01000014_gene492	1.044e-142	457.0	COG0293@1|root,COG0293@2|Bacteria,1MW1C@1224|Proteobacteria,2TSBW@28211|Alphaproteobacteria,3JRJX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit	ftsJ	-	2.1.1.166	ko:K02427	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	FtsJ
SX3_k127_1524819_19	1038860.AXAP01000060_gene2284	0.000611	46.0	COG0135@1|root,COG0135@2|Bacteria,1RA87@1224|Proteobacteria,2U7CH@28211|Alphaproteobacteria,3JRQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the TrpF family	trpF	-	5.3.1.24	ko:K01817	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03509	RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	PRAI
SX3_k127_1524819_7	1230476.C207_06582	2.619e-209	653.0	COG0248@1|root,COG0248@2|Bacteria,1MV35@1224|Proteobacteria,2TT2C@28211|Alphaproteobacteria,3JRA2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	FP	Ppx/GppA phosphatase family	ppx	-	3.6.1.11,3.6.1.40	ko:K01524	ko00230,map00230	-	R03409	RC00002	ko00000,ko00001,ko01000	-	-	-	Ppx-GppA
SX3_k127_1524819_0	1230476.C207_06581	0.0	1538.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,3JQVN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	MA20_27485	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_1524819_10	1297865.APJD01000014_gene495	1.69e-172	557.0	COG2030@1|root,COG2030@2|Bacteria,1NYEM@1224|Proteobacteria,2U0F4@28211|Alphaproteobacteria,3JVIY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	dehydratase	MA20_27475	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1524819_14	1297865.APJD01000014_gene496	8.564e-95	325.0	COG1671@1|root,COG1671@2|Bacteria,1RCZA@1224|Proteobacteria,2U997@28211|Alphaproteobacteria,3JV5Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0178 family	MA20_27470	-	-	ko:K09768	-	-	-	-	ko00000	-	-	-	DUF188
SX3_k127_1524819_1	1297865.APJD01000014_gene497	0.0	1190.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TR3X@28211|Alphaproteobacteria,3JTPC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter C-terminal domain	uup	GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010528,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0070894,GO:0071944,GO:0080090,GO:0097159,GO:1901363	-	ko:K15738	-	-	-	-	ko00000,ko02000	3.A.1.120.6	-	-	ABC_tran,ABC_tran_CTD
SX3_k127_1524819_4	1297865.APJD01000014_gene498	9.8e-246	759.0	COG3616@1|root,COG3616@2|Bacteria,1MVQE@1224|Proteobacteria,2TSQ3@28211|Alphaproteobacteria,3JSXI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Putative serine dehydratase domain	MA20_27460	-	-	-	-	-	-	-	-	-	-	-	Ala_racemase_N,D-ser_dehydrat
SX3_k127_1524819_9	1297865.APJD01000014_gene499	1.542e-190	595.0	COG0583@1|root,COG0583@2|Bacteria,1R55T@1224|Proteobacteria,2U1HT@28211|Alphaproteobacteria,3JRZS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1524819_5	1297865.APJD01000014_gene500	7.188e-244	756.0	COG0477@1|root,COG2814@2|Bacteria,1MVVW@1224|Proteobacteria,2TVQU@28211|Alphaproteobacteria,3JVZP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1524819_12	1297865.APJD01000014_gene501	1.264e-124	400.0	COG2081@1|root,COG2081@2|Bacteria,1MUGC@1224|Proteobacteria,2TR1K@28211|Alphaproteobacteria,3JSJK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HI0933-like protein	-	-	-	ko:K07007	-	-	-	-	ko00000	-	-	-	HI0933_like
SX3_k127_1539073_13	1297865.APJD01000011_gene6572	1.493e-24	104.0	COG0789@1|root,COG0789@2|Bacteria,1N9C6@1224|Proteobacteria,2UC87@28211|Alphaproteobacteria,3K16A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator MerR family	-	-	-	-	-	-	-	-	-	-	-	-	MerR,MerR-DNA-bind,MerR_1
SX3_k127_1539073_8	1297865.APJD01000011_gene6573	8.866e-178	558.0	COG2220@1|root,COG2220@2|Bacteria,1NVME@1224|Proteobacteria,2U180@28211|Alphaproteobacteria,3JRGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Beta-lactamase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_3
SX3_k127_1539073_6	1297865.APJD01000011_gene6574	3.588e-211	661.0	COG0596@1|root,COG0596@2|Bacteria,1MWT6@1224|Proteobacteria,2TSCE@28211|Alphaproteobacteria,3JUJZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_1539073_1	1297865.APJD01000011_gene6575	0.0	1362.0	COG1502@1|root,COG1502@2|Bacteria,1R4EZ@1224|Proteobacteria,2U0UJ@28211|Alphaproteobacteria,3JXRX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	PLD-like domain	-	-	-	-	-	-	-	-	-	-	-	-	PLDc_2
SX3_k127_1539073_3	1297865.APJD01000011_gene6576	2.531e-286	895.0	2CJVH@1|root,2Z82D@2|Bacteria,1MX2M@1224|Proteobacteria,2TTCY@28211|Alphaproteobacteria,3JSEN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_19455	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	-
SX3_k127_1539073_11	1297865.APJD01000011_gene6577	3.133e-155	494.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TY37@28211|Alphaproteobacteria,3JRC1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ATPases associated with a variety of cellular activities	MA20_19450	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
SX3_k127_1539073_7	1297865.APJD01000011_gene6578	2.808e-180	565.0	COG0559@1|root,COG0559@2|Bacteria,1MU25@1224|Proteobacteria,2TSDS@28211|Alphaproteobacteria,3JTSI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_19445	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1539073_5	1297865.APJD01000011_gene6579	4.228e-234	726.0	COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2TV37@28211|Alphaproteobacteria,3JRUP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_19440	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1539073_12	1297865.APJD01000011_gene6580	1.141e-154	509.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TVJU@28211|Alphaproteobacteria,3JQXN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	MA20_19435	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_1539073_9	1297865.APJD01000011_gene6581	3.102e-163	516.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TR61@28211|Alphaproteobacteria,3JUH1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	AAA domain, putative AbiEii toxin, Type IV TA system	MA20_19430	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,DLIC
SX3_k127_1539073_2	1297865.APJD01000011_gene6582	0.0	1298.0	COG1022@1|root,COG1022@2|Bacteria,1MU4D@1224|Proteobacteria,2TSSI@28211|Alphaproteobacteria,3JSSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	AMP-binding enzyme	MA20_19425	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding
SX3_k127_1539073_4	1297865.APJD01000011_gene6583	2.098e-258	807.0	COG0683@1|root,COG0683@2|Bacteria,1MWR8@1224|Proteobacteria,2UQXU@28211|Alphaproteobacteria,3JS0Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_19420	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1539073_10	1297865.APJD01000011_gene6584	6.07e-159	505.0	COG3672@1|root,COG3672@2|Bacteria,1RDQS@1224|Proteobacteria,2TTZT@28211|Alphaproteobacteria,3JVGR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial transglutaminase-like cysteine proteinase BTLCP	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C93
SX3_k127_1539073_0	1297865.APJD01000011_gene6585	0.0	2526.0	COG2931@1|root,COG4254@1|root,COG2931@2|Bacteria,COG4254@2|Bacteria,1MU7T@1224|Proteobacteria,2TV0C@28211|Alphaproteobacteria,3JS2H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	QU	FecR protein	-	-	-	-	-	-	-	-	-	-	-	-	Cadherin_3,FecR,HemolysinCabind,Laminin_G_3,VWA
SX3_k127_1550725_1	1297865.APJD01000007_gene2122	1.76e-236	731.0	COG0108@1|root,COG0807@1|root,COG0108@2|Bacteria,COG0807@2|Bacteria,1MU8P@1224|Proteobacteria,2TSMA@28211|Alphaproteobacteria,3JT2I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate	ribB	-	3.5.4.25,4.1.99.12	ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	M00125,M00840	R00425,R07281	RC00293,RC01792,RC01815,RC02504	ko00000,ko00001,ko00002,ko01000	-	-	-	DHBP_synthase,GTP_cyclohydro2
SX3_k127_1550725_0	398525.KB900701_gene3296	0.0	1047.0	COG0475@1|root,COG1226@1|root,COG0475@2|Bacteria,COG1226@2|Bacteria,1MV34@1224|Proteobacteria,2TRC5@28211|Alphaproteobacteria,3JTZ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family	MA20_07375	-	-	-	-	-	-	-	-	-	-	-	Na_H_Exchanger,TrkA_N
SX3_k127_1550725_3	1230476.C207_02973	2.29e-100	329.0	2D2K4@1|root,32XTX@2|Bacteria,1R38A@1224|Proteobacteria,2U62K@28211|Alphaproteobacteria,3JR4U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3124)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3124
SX3_k127_1550725_2	1297865.APJD01000007_gene2119	1.932e-192	602.0	COG1167@1|root,COG1167@2|Bacteria,1MV6F@1224|Proteobacteria,2TR7I@28211|Alphaproteobacteria,3JRS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EK	Alanine-glyoxylate amino-transferase	MA20_07365	-	-	ko:K00375,ko:K05825	ko00300,ko01100,ko01130,ko01210,map00300,map01100,map01130,map01210	-	R01939	RC00006	ko00000,ko00001,ko01000,ko03000	-	-	-	Aminotran_1_2,GntR
SX3_k127_1571153_4	1297865.APJD01000007_gene2259	1.261e-188	591.0	28JPA@1|root,2Z9FC@2|Bacteria,1PN1F@1224|Proteobacteria,2TSKX@28211|Alphaproteobacteria,3JT6R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1571153_3	1297865.APJD01000007_gene2260	9.527e-253	784.0	COG0477@1|root,COG2814@2|Bacteria,1QUY6@1224|Proteobacteria,2TWZ0@28211|Alphaproteobacteria,3JQS0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1571153_1	1297865.APJD01000007_gene2261	0.0	1131.0	COG0146@1|root,COG0146@2|Bacteria,1QU46@1224|Proteobacteria,2TVYU@28211|Alphaproteobacteria,3JRW4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EQ	Hydantoinase B/oxoprolinase	-	-	3.5.2.14	ko:K01474	ko00330,ko01100,map00330,map01100	-	R03187	RC00632	ko00000,ko00001,ko01000	-	-	-	Hydantoinase_B
SX3_k127_1571153_0	1297865.APJD01000007_gene2262	0.0	1302.0	COG0145@1|root,COG0145@2|Bacteria,1MU2Y@1224|Proteobacteria,2TQZ6@28211|Alphaproteobacteria,3JSA9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EQ	Hydantoinase/oxoprolinase	-	-	3.5.2.14	ko:K01473	ko00330,ko01100,map00330,map01100	-	R03187	RC00632	ko00000,ko00001,ko01000	-	-	-	Hydant_A_N,Hydantoinase_A
SX3_k127_1571153_2	1297865.APJD01000007_gene2263	2.647e-256	792.0	COG0683@1|root,COG0683@2|Bacteria,1R44H@1224|Proteobacteria,2U0EQ@28211|Alphaproteobacteria,3JRNC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_1571877_4	1297865.APJD01000001_gene5993	3.646e-34	135.0	COG0745@1|root,COG3920@1|root,COG0745@2|Bacteria,COG3920@2|Bacteria,1MVPJ@1224|Proteobacteria,2TSSQ@28211|Alphaproteobacteria,3JRJU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase-like ATPase domain	fsrR	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HATPase_c_2,HisKA_2,Response_reg
SX3_k127_1571877_3	1297865.APJD01000001_gene5992	2.833e-90	298.0	COG0784@1|root,COG0784@2|Bacteria,1QUN7@1224|Proteobacteria,2U718@28211|Alphaproteobacteria,3JY4Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	MA20_29145	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_1571877_0	1297865.APJD01000001_gene5991	1.897e-304	941.0	COG4251@1|root,COG5278@1|root,COG4251@2|Bacteria,COG5278@2|Bacteria,1NSQ1@1224|Proteobacteria,2TSPY@28211|Alphaproteobacteria,3JU59@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	CHASE3,HATPase_c,HisKA,MHYT,PAS_3
SX3_k127_1571877_1	1297865.APJD01000001_gene5990	1.094e-298	916.0	COG0439@1|root,COG0439@2|Bacteria,1MU4H@1224|Proteobacteria,2U25Z@28211|Alphaproteobacteria,3JTBZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Biotin carboxylase	accC	GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576	6.3.4.14,6.4.1.2	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04385	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,CPSase_L_D2
SX3_k127_1571877_2	1297865.APJD01000001_gene5989	9.361e-91	300.0	COG0511@1|root,COG0511@2|Bacteria,1RCXA@1224|Proteobacteria,2U93Y@28211|Alphaproteobacteria,3JY4E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA	accB	GO:0003674,GO:0003824,GO:0003989,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009305,GO:0009987,GO:0016049,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901564,GO:1901576	-	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742	RC00040,RC00367	ko00000,ko00001,ko00002	-	-	-	Biotin_lipoyl
SX3_k127_1581760_8	1297865.APJD01000001_gene5971	5.76e-225	698.0	COG3307@1|root,COG3307@2|Bacteria,1R495@1224|Proteobacteria,2TQUQ@28211|Alphaproteobacteria,3JTQD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	O-Antigen ligase	-	-	-	-	-	-	-	-	-	-	-	-	Wzy_C
SX3_k127_1581760_2	1297865.APJD01000001_gene5970	4.292e-297	941.0	COG0438@1|root,COG0438@2|Bacteria,1R402@1224|Proteobacteria,2VF3P@28211|Alphaproteobacteria,3JU30@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_1581760_10	1297865.APJD01000001_gene5969	2.722e-153	484.0	COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,2TU3M@28211|Alphaproteobacteria,3JQWF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	ABC transporter	-	-	-	ko:K09691	ko02010,map02010	M00250	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.103	-	-	ABC_tran,Wzt_C
SX3_k127_1581760_1	1297865.APJD01000001_gene5968	0.0	1279.0	COG0438@1|root,COG1682@1|root,COG0438@2|Bacteria,COG1682@2|Bacteria,1MVB4@1224|Proteobacteria,2TSSB@28211|Alphaproteobacteria,3JT7U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	2.4.1.348	ko:K12995	-	-	-	-	ko00000,ko01000,ko01003,ko01005	-	GT4	-	ABC2_membrane,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_1581760_17	1297865.APJD01000001_gene5967	2.926e-28	124.0	29MWW@1|root,308UN@2|Bacteria,1NPV5@1224|Proteobacteria,2UMM0@28211|Alphaproteobacteria,3K20M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1581760_15	1297865.APJD01000001_gene5966	1.413e-87	289.0	2A851@1|root,30X5T@2|Bacteria,1RFM4@1224|Proteobacteria,2U6ZY@28211|Alphaproteobacteria,3JYSI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1581760_9	1297865.APJD01000001_gene5965	1.101e-183	575.0	COG5281@1|root,COG5281@2|Bacteria,1NZ1M@1224|Proteobacteria,2TS08@28211|Alphaproteobacteria,3JUB7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	sister chromatid segregation	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1581760_6	1297865.APJD01000001_gene5964	2.031e-239	743.0	28PH1@1|root,2ZC7N@2|Bacteria,1RAFS@1224|Proteobacteria,2TQW7@28211|Alphaproteobacteria,3JSPU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1581760_3	1230476.C207_01343	1.251e-278	859.0	COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2TQZE@28211|Alphaproteobacteria,3JRKV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Peptidase family M23	MA20_30780	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
SX3_k127_1581760_13	1230476.C207_01344	2.34e-119	389.0	COG1225@1|root,COG1225@2|Bacteria,1RD4R@1224|Proteobacteria,2U6Z9@28211|Alphaproteobacteria,3JTEU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Redoxin	bcp	-	1.11.1.15	ko:K03564	-	-	-	-	ko00000,ko01000	-	-	-	AhpC-TSA
SX3_k127_1581760_0	1297865.APJD01000001_gene5961	0.0	2397.0	COG3164@1|root,COG3164@2|Bacteria,1MVDY@1224|Proteobacteria,2TSGG@28211|Alphaproteobacteria,3JTCH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function	MA20_30770	-	-	-	-	-	-	-	-	-	-	-	AsmA_2,DUF3971
SX3_k127_1581760_5	1297865.APJD01000001_gene5960	2.942e-271	840.0	COG0477@1|root,COG2814@2|Bacteria,1P4XF@1224|Proteobacteria,2U185@28211|Alphaproteobacteria,3JT15@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1581760_4	1297865.APJD01000001_gene5959	2.218e-273	841.0	COG0162@1|root,COG0162@2|Bacteria,1MVUQ@1224|Proteobacteria,2TQPA@28211|Alphaproteobacteria,3JRMZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)	tyrS	GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564	6.1.1.1	ko:K01866	ko00970,map00970	M00359,M00360	R02918	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	S4,tRNA-synt_1b
SX3_k127_1581760_7	1297865.APJD01000001_gene5958	9.078e-229	710.0	COG2377@1|root,COG2377@2|Bacteria,1MV4E@1224|Proteobacteria,2TS4G@28211|Alphaproteobacteria,3JSYI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling	anmK	-	2.7.1.170	ko:K09001	-	-	-	-	ko00000,ko01000	-	-	-	AnmK
SX3_k127_1581760_11	1297865.APJD01000001_gene5957	1.608e-143	456.0	COG0625@1|root,COG0625@2|Bacteria,1MXJD@1224|Proteobacteria,2TS1B@28211|Alphaproteobacteria,3JSVW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	gstch1	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N_3
SX3_k127_1581760_16	1297865.APJD01000001_gene5956	1.833e-60	209.0	COG2076@1|root,COG2076@2|Bacteria,1RK97@1224|Proteobacteria,2UADY@28211|Alphaproteobacteria,3JZVD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Small Multidrug Resistance protein	-	-	-	ko:K11741	-	-	-	-	ko00000,ko02000	2.A.7.1	-	-	Multi_Drug_Res
SX3_k127_1581760_12	1230476.C207_01351	2.351e-143	454.0	COG2945@1|root,COG2945@2|Bacteria,1MUDY@1224|Proteobacteria,2TRMI@28211|Alphaproteobacteria,3JQVF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	X-Pro dipeptidyl-peptidase (S15 family)	QU41_16170	-	-	ko:K07018	-	-	-	-	ko00000	-	-	-	Hydrolase_4,Peptidase_S15
SX3_k127_1581760_14	1297865.APJD01000001_gene5954	1.759e-90	299.0	COG1104@1|root,COG1104@2|Bacteria,1MU1C@1224|Proteobacteria,2TSQE@28211|Alphaproteobacteria,3JRD9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-V	nifS	GO:0000096,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006464,GO:0006520,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016043,GO:0016226,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0018282,GO:0018283,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0031071,GO:0031163,GO:0031974,GO:0031981,GO:0032324,GO:0034641,GO:0036211,GO:0042278,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043545,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0046983,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657	2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	-	R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	-	-	-	Aminotran_5
SX3_k127_1591348_7	1297865.APJD01000041_gene2656	1.096e-89	295.0	COG0457@1|root,COG0457@2|Bacteria,1MXMD@1224|Proteobacteria,2U0F2@28211|Alphaproteobacteria,3JVSC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_14,TPR_16,TPR_19
SX3_k127_1591348_2	1297865.APJD01000041_gene2655	1.969e-157	507.0	2BSS6@1|root,32MV7@2|Bacteria,1RAIF@1224|Proteobacteria,2U5UX@28211|Alphaproteobacteria,3JYB9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1591348_6	1297865.APJD01000041_gene2654	2.516e-91	304.0	COG1596@1|root,COG1596@2|Bacteria,1N7GP@1224|Proteobacteria,2U771@28211|Alphaproteobacteria,3JZ8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	SLBB domain	-	-	-	ko:K01991	ko02026,map02026	-	-	-	ko00000,ko00001,ko02000	1.B.18	-	-	Poly_export,SLBB
SX3_k127_1591348_1	1297865.APJD01000041_gene2653	1.078e-180	566.0	COG3267@1|root,COG3267@2|Bacteria,1MU3G@1224|Proteobacteria,2U1EJ@28211|Alphaproteobacteria,3JX7M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	AAA domain	exeA	-	-	ko:K02450	-	M00331	-	-	ko00000,ko00002,ko02044	9.B.42	-	-	AAA_22
SX3_k127_1591348_0	1297865.APJD01000041_gene2652	1.164e-235	734.0	COG3206@1|root,COG3206@2|Bacteria,1MVBX@1224|Proteobacteria,2TTBW@28211|Alphaproteobacteria,3JV0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	protein involved in exopolysaccharide biosynthesis	-	-	-	-	-	-	-	-	-	-	-	-	GNVR,Wzz
SX3_k127_1591348_5	1297865.APJD01000041_gene2651	4.179e-124	402.0	COG0489@1|root,COG0489@2|Bacteria,1MWQC@1224|Proteobacteria,2TXN9@28211|Alphaproteobacteria,3JX2T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	CobQ/CobB/MinD/ParA nucleotide binding domain	-	-	-	-	-	-	-	-	-	-	-	-	CbiA,ParA
SX3_k127_1591348_3	1297865.APJD01000041_gene2650	6.51e-141	449.0	29BUU@1|root,2ZYT4@2|Bacteria,1RKVC@1224|Proteobacteria,2U9XC@28211|Alphaproteobacteria,3JZZF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1591348_4	1297865.APJD01000041_gene2649	7.495e-131	421.0	2DKYH@1|root,30WKQ@2|Bacteria,1RCXC@1224|Proteobacteria,2U6TU@28211|Alphaproteobacteria,3JYM3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3485)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3485
SX3_k127_1600487_7	1230476.C207_02542	9.203e-28	113.0	COG2225@1|root,COG2225@2|Bacteria,1MVEV@1224|Proteobacteria,2TS9R@28211|Alphaproteobacteria,3JQN2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA	glcB	GO:0000287,GO:0003674,GO:0003824,GO:0004474,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009436,GO:0009987,GO:0016054,GO:0016740,GO:0016746,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0046395,GO:0046487,GO:0046872,GO:0046912,GO:0071704,GO:0072329,GO:1901575	2.3.3.9	ko:K01638	ko00620,ko00630,ko01100,ko01110,ko01120,ko01200,map00620,map00630,map01100,map01110,map01120,map01200	M00012	R00472	RC00004,RC00308,RC02747	ko00000,ko00001,ko00002,ko01000	-	-	-	Malate_synthase
SX3_k127_1600487_3	1297865.APJD01000011_gene6856	2.539e-242	753.0	COG0477@1|root,COG2814@2|Bacteria,1MVD0@1224|Proteobacteria,2TTBC@28211|Alphaproteobacteria,3JXQA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	nepI	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1600487_4	1297865.APJD01000011_gene6857	2.041e-195	619.0	COG2207@1|root,COG2207@2|Bacteria,1N0FA@1224|Proteobacteria,2U2GJ@28211|Alphaproteobacteria,3K5XW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cupin	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_6,HTH_18
SX3_k127_1600487_0	1297865.APJD01000011_gene6858	0.0	1262.0	COG0529@1|root,COG2895@1|root,COG0529@2|Bacteria,COG2895@2|Bacteria,1MUD9@1224|Proteobacteria,2TQNJ@28211|Alphaproteobacteria,3JRFP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Catalyzes the synthesis of activated sulfate	cysC	-	2.7.1.25,2.7.7.4	ko:K00955	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130	M00176	R00509,R00529,R04928,R04929	RC00002,RC00078,RC02809,RC02889	ko00000,ko00001,ko00002,ko01000	-	-	-	APS_kinase,GTP_EFTU
SX3_k127_1600487_5	1230476.C207_02546	1.84e-178	562.0	COG0175@1|root,COG0175@2|Bacteria,1MUCZ@1224|Proteobacteria,2TT2D@28211|Alphaproteobacteria,3JRFD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	sulfate adenylyltransferase (ATP) activity	cysD	-	2.7.7.4	ko:K00957	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130	M00176,M00596	R00529,R04929	RC02809,RC02889	ko00000,ko00001,ko00002,ko01000	-	-	-	PAPS_reduct
SX3_k127_1600487_2	1297865.APJD01000011_gene6860	1.086e-302	930.0	COG0007@1|root,COG1648@1|root,COG0007@2|Bacteria,COG1648@2|Bacteria,1MUI0@1224|Proteobacteria,2TRJC@28211|Alphaproteobacteria,3JT91@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme	cobA	-	1.3.1.76,2.1.1.107,4.99.1.4	ko:K02302,ko:K02303	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02864,R03194,R03947	RC00003,RC00871,RC01012,RC01034	ko00000,ko00001,ko00002,ko01000	-	-	-	CysG_dimeriser,NAD_binding_7,Sirohm_synth_M,TP_methylase
SX3_k127_1600487_6	1297865.APJD01000011_gene6861	3.501e-57	209.0	2EG12@1|root,339T3@2|Bacteria,1Q25W@1224|Proteobacteria,2V64K@28211|Alphaproteobacteria,3K0FW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2849)	MA20_18225	-	-	-	-	-	-	-	-	-	-	-	DUF2849
SX3_k127_1600487_1	1297865.APJD01000011_gene6862	0.0	1126.0	COG0155@1|root,COG0155@2|Bacteria,1MVVB@1224|Proteobacteria,2TRCR@28211|Alphaproteobacteria,3JU72@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Nitrite and sulphite reductase 4Fe-4S domain	cysI	-	1.8.1.2	ko:K00381	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00176	R00858	RC00065	ko00000,ko00001,ko00002,ko01000	-	-	-	NIR_SIR,NIR_SIR_ferr
SX3_k127_1600487_8	172088.AUGA01000001_gene6445	6.433e-21	93.0	COG3749@1|root,COG3749@2|Bacteria,1RJR9@1224|Proteobacteria,2UDH7@28211|Alphaproteobacteria,3JY89@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF934)	MA20_18215	-	-	-	-	-	-	-	-	-	-	-	DUF934
SX3_k127_1600803_11	1123072.AUDH01000037_gene135	2.746e-35	134.0	COG0013@1|root,COG0013@2|Bacteria,1MU9A@1224|Proteobacteria,2TQV4@28211|Alphaproteobacteria,2JQJ1@204441|Rhodospirillales	204441|Rhodospirillales	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	alaS	-	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DHHA1,tRNA-synt_2c,tRNA_SAD
SX3_k127_1600803_12	1297865.APJD01000008_gene5544	9.749e-31	123.0	COG0013@1|root,COG0013@2|Bacteria,1MU9A@1224|Proteobacteria,2TQV4@28211|Alphaproteobacteria,3JS26@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	alaS	GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DHHA1,tRNA-synt_2c,tRNA_SAD
SX3_k127_1600803_1	1297865.APJD01000008_gene5545	1.71e-256	793.0	COG0404@1|root,COG0404@2|Bacteria,1MV96@1224|Proteobacteria,2TRN4@28211|Alphaproteobacteria,3JRGH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	glycine cleavage system	gcvT	GO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008483,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019464,GO:0019752,GO:0032259,GO:0032991,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902494,GO:1990204	2.1.2.10	ko:K00605	ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200	M00532	R01221,R02300,R04125	RC00022,RC00069,RC00183,RC02834	ko00000,ko00001,ko00002,ko01000	-	-	-	GCV_T,GCV_T_C
SX3_k127_1600803_6	1297865.APJD01000008_gene5546	3.296e-68	235.0	COG0509@1|root,COG0509@2|Bacteria,1RGV7@1224|Proteobacteria,2U9BY@28211|Alphaproteobacteria,3JYRT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein	gcvH	-	-	ko:K02437	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	M00532	R01221	RC00022,RC02834	ko00000,ko00001,ko00002	-	-	-	GCV_H
SX3_k127_1600803_0	1297865.APJD01000008_gene5547	0.0	1923.0	COG0403@1|root,COG1003@1|root,COG0403@2|Bacteria,COG1003@2|Bacteria,1MUDP@1224|Proteobacteria,2TSFF@28211|Alphaproteobacteria,3JUAJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor	gcvP	-	1.4.4.2	ko:K00281,ko:K00283	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	M00532	R01221,R03425	RC00022,RC00929,RC02834,RC02880	ko00000,ko00001,ko00002,ko01000	-	-	-	Aminotran_5,GDC-P
SX3_k127_1600803_4	1297865.APJD01000008_gene5548	2.933e-87	293.0	COG0824@1|root,COG0824@2|Bacteria,1MYY1@1224|Proteobacteria,2U4W3@28211|Alphaproteobacteria,3JYI9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thioesterase-like superfamily	-	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT,4HBT_2
SX3_k127_1600803_3	1230476.C207_00707	6.043e-209	651.0	2DBAY@1|root,2Z84S@2|Bacteria,1R7V4@1224|Proteobacteria,2U4D2@28211|Alphaproteobacteria,3JXS6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_2	1230476.C207_00708	6.716e-226	701.0	COG0468@1|root,COG0468@2|Bacteria,1MU3C@1224|Proteobacteria,2TRPR@28211|Alphaproteobacteria,3JR81@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	recA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0071496	-	ko:K03553	ko03440,map03440	M00729	-	-	ko00000,ko00001,ko00002,ko03400	-	-	-	RecA
SX3_k127_1600803_19	1037409.BJ6T_39780	7.741e-11	65.0	2AIGU@1|root,319QM@2|Bacteria,1NFPW@1224|Proteobacteria,2UG6H@28211|Alphaproteobacteria,3K1BA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_23	316056.RPC_4437	0.0003039	45.0	2AIFU@1|root,318XD@2|Bacteria,1NQC5@1224|Proteobacteria,2UMHP@28211|Alphaproteobacteria,3K23E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_16	1230476.C207_00709	1.066e-19	89.0	2A6MU@1|root,30VFN@2|Bacteria,1P456@1224|Proteobacteria,2UY3N@28211|Alphaproteobacteria,3K5P7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_20	391624.OIHEL45_02550	3.675e-09	60.0	28N2S@1|root,2ZB8K@2|Bacteria,1R9VY@1224|Proteobacteria,2U8QS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	P63C domain	-	-	-	-	-	-	-	-	-	-	-	-	P63C
SX3_k127_1600803_15	936455.KI421499_gene1740	4.723e-20	91.0	2EH5K@1|root,314JM@2|Bacteria,1NAK4@1224|Proteobacteria,2UGR9@28211|Alphaproteobacteria,3K12Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_14	1037409.BJ6T_31140	9.06e-21	93.0	2EH5K@1|root,314JM@2|Bacteria,1NAK4@1224|Proteobacteria,2UGR9@28211|Alphaproteobacteria,3K12Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_7	1038860.AXAP01000055_gene3542	2.947e-55	196.0	2EH5K@1|root,33AXH@2|Bacteria,1RJVM@1224|Proteobacteria,2UA7C@28211|Alphaproteobacteria,3JZD1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_5	936455.KI421499_gene5798	6.048e-78	262.0	COG0071@1|root,COG0071@2|Bacteria,1RH2X@1224|Proteobacteria,2U96D@28211|Alphaproteobacteria,3JY7Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Hsp20/alpha crystallin family	ibpA	-	-	ko:K04080	-	-	-	-	ko00000,ko03110	-	-	-	HSP20
SX3_k127_1600803_17	1037409.BJ6T_39780	5.249e-18	85.0	2AIGU@1|root,319QM@2|Bacteria,1NFPW@1224|Proteobacteria,2UG6H@28211|Alphaproteobacteria,3K1BA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_10	1297865.APJD01000008_gene5552	1.139e-36	139.0	2AEEH@1|root,3149B@2|Bacteria,1N9IZ@1224|Proteobacteria,2UFIG@28211|Alphaproteobacteria,3K0VM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_9	172088.AUGA01000011_gene2713	3.512e-39	152.0	2C0Z1@1|root,32Y66@2|Bacteria,1N9AH@1224|Proteobacteria,2UFBQ@28211|Alphaproteobacteria,3K07K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_8	1297865.APJD01000008_gene5554	8.496e-49	179.0	2DH9F@1|root,2ZYVP@2|Bacteria,1RM5M@1224|Proteobacteria,2VGFP@28211|Alphaproteobacteria,3JZNH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_13	1297865.APJD01000008_gene5555	4.816e-23	98.0	2AGZB@1|root,31784@2|Bacteria,1NJAN@1224|Proteobacteria,2UK4Y@28211|Alphaproteobacteria,3K1XB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1600803_18	1230476.C207_00715	3.561e-15	76.0	COG0154@1|root,COG0154@2|Bacteria,1MWWQ@1224|Proteobacteria,2TSN9@28211|Alphaproteobacteria,3JS0D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the amidase family	MA20_04710	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_1621695_2	392499.Swit_3235	2.573e-12	66.0	COG0493@1|root,COG1145@1|root,COG0493@2|Bacteria,COG1145@2|Bacteria,1MU2H@1224|Proteobacteria,2TQK5@28211|Alphaproteobacteria,2KAE5@204457|Sphingomonadales	204457|Sphingomonadales	C	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	-	-	-	-	-	-	-	-	-	-	-	-	Fer4_20,Pyr_redox_2
SX3_k127_1621695_0	1297865.APJD01000006_gene4416	0.0	1262.0	COG0674@1|root,COG1014@1|root,COG0674@2|Bacteria,COG1014@2|Bacteria,1NBSJ@1224|Proteobacteria,2TU21@28211|Alphaproteobacteria,3JUZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg	MA20_01045	-	1.2.7.11,1.2.7.3	ko:K00174	ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200	M00009,M00011,M00173,M00620	R01196,R01197	RC00004,RC02742,RC02833	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	PFOR_II,POR,POR_N
SX3_k127_1621695_1	398525.KB900701_gene6821	1.205e-239	742.0	COG1013@1|root,COG1013@2|Bacteria,1R5BF@1224|Proteobacteria,2TR4R@28211|Alphaproteobacteria,3JTAE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	MA20_01040	-	1.2.7.11,1.2.7.3	ko:K00175	ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200	M00009,M00011,M00173,M00620	R01196,R01197	RC00004,RC02742,RC02833	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	PFO_beta_C,TPP_enzyme_C
SX3_k127_1624141_53	1297865.APJD01000005_gene3552	1.918e-60	208.0	COG3327@1|root,COG3327@2|Bacteria,1R4IF@1224|Proteobacteria,2TS3A@28211|Alphaproteobacteria,3JU2C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	phenylacetic acid degradation operon negative regulatory protein PaaX	paaX	-	-	ko:K02616	-	-	-	-	ko00000,ko03000	-	-	-	PaaX,PaaX_C
SX3_k127_1624141_20	1297865.APJD01000005_gene3553	6.498e-223	691.0	COG3396@1|root,COG3396@2|Bacteria,1MVQ7@1224|Proteobacteria,2TTC4@28211|Alphaproteobacteria,3JTGS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phenylacetic acid catabolic protein	paaA	-	1.14.13.149	ko:K02609	ko00360,ko01120,map00360,map01120	-	R09838	RC02690	ko00000,ko00001,ko01000	-	-	-	PaaA_PaaC
SX3_k127_1624141_54	1297865.APJD01000005_gene3554	2.31e-58	202.0	COG3460@1|root,COG3460@2|Bacteria,1RHM5@1224|Proteobacteria,2U9HF@28211|Alphaproteobacteria,3JZFH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	phenylacetic acid degradation	paaB	-	-	ko:K02610	ko00360,ko01120,map00360,map01120	-	R09838	RC02690	ko00000,ko00001	-	-	-	PaaB
SX3_k127_1624141_33	1297865.APJD01000005_gene3555	5.032e-170	533.0	COG3396@1|root,COG3396@2|Bacteria,1MVYQ@1224|Proteobacteria,2TRYF@28211|Alphaproteobacteria,3JUK9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phenylacetic acid catabolic protein	paaC	-	1.14.13.149	ko:K02611	ko00360,ko01120,map00360,map01120	-	R09838	RC02690	ko00000,ko00001,ko01000	-	-	-	PaaA_PaaC
SX3_k127_1624141_47	113395.AXAI01000009_gene2374	1.147e-86	293.0	COG2151@1|root,COG2151@2|Bacteria,1RF3S@1224|Proteobacteria,2TRQW@28211|Alphaproteobacteria,3JSNZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Iron-sulfur cluster assembly protein	paaD	-	-	ko:K02612	ko00360,ko01120,map00360,map01120	-	R09838	RC02690	ko00000,ko00001	-	-	-	FeS_assembly_P
SX3_k127_1624141_18	1297865.APJD01000005_gene3557	1.856e-238	737.0	COG1018@1|root,COG1018@2|Bacteria,1MY2Q@1224|Proteobacteria,2U0WY@28211|Alphaproteobacteria,3JTD7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Oxidoreductase FAD-binding domain	paaE	-	-	ko:K02613	ko00360,ko01120,map00360,map01120	-	R09838	RC02690	ko00000,ko00001	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
SX3_k127_1624141_46	1230476.C207_02409	2.495e-90	299.0	COG2050@1|root,COG2050@2|Bacteria,1RH35@1224|Proteobacteria,2U5QW@28211|Alphaproteobacteria,3JV3S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	paaI	-	-	ko:K02614	ko00360,map00360	-	R09840	RC00004,RC00014	ko00000,ko00001,ko01000	-	-	-	4HBT
SX3_k127_1624141_8	1297865.APJD01000005_gene3559	5.393e-297	911.0	COG1541@1|root,COG1541@2|Bacteria,1MV1W@1224|Proteobacteria,2TRVF@28211|Alphaproteobacteria,3JTWB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)	paaF	-	6.2.1.30	ko:K01912	ko00360,ko01120,ko05111,map00360,map01120,map05111	-	R02539	RC00004,RC00014	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C_2
SX3_k127_1624141_62	114615.BRADO3920	1.929e-05	51.0	COG4953@1|root,COG4953@2|Bacteria,1MUA9@1224|Proteobacteria,2TR2R@28211|Alphaproteobacteria,3JS2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-Binding Protein C-terminus Family	pbpC	-	2.4.1.129	ko:K05367	ko00550,map00550	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	BiPBP_C,Transgly,Transpeptidase
SX3_k127_1624141_5	1297865.APJD01000005_gene3560	6.585e-309	950.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TV11@28211|Alphaproteobacteria,3JWJD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	-	-	6.3.5.6,6.3.5.7	ko:K02433,ko:K21801	ko00380,ko00970,ko01100,map00380,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
SX3_k127_1624141_22	1297865.APJD01000005_gene3561	1.852e-214	667.0	COG0604@1|root,COG0604@2|Bacteria,1MXZ9@1224|Proteobacteria,2TUS6@28211|Alphaproteobacteria,3JRKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	MA20_16610	-	-	-	-	-	-	-	-	-	-	-	ADH_zinc_N
SX3_k127_1624141_23	1297865.APJD01000005_gene3562	8.633e-208	648.0	COG2391@1|root,COG2391@2|Bacteria,1MXSE@1224|Proteobacteria,2TRUQ@28211|Alphaproteobacteria,3JS3X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulphur transport	-	-	-	ko:K07112	-	-	-	-	ko00000	-	-	-	Sulf_transp
SX3_k127_1624141_56	1411123.JQNH01000001_gene867	2.373e-50	186.0	COG0546@1|root,COG0546@2|Bacteria,1RDA7@1224|Proteobacteria,2U703@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	HAD-superfamily hydrolase subfamily IA, variant 1	ppaX	-	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	-	R01334	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD_2
SX3_k127_1624141_49	1041138.KB890222_gene378	8.039e-76	259.0	COG0698@1|root,COG0698@2|Bacteria,1RHBF@1224|Proteobacteria,2U94R@28211|Alphaproteobacteria,4B8RP@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	Ribose/Galactose Isomerase	rpiB	-	5.3.1.6	ko:K01808	ko00030,ko00051,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01056,R09030	RC00376,RC00434	ko00000,ko00001,ko00002,ko01000	-	-	-	LacAB_rpiB
SX3_k127_1624141_51	709797.CSIRO_2870	2.743e-68	235.0	COG0669@1|root,COG0669@2|Bacteria,1RD9F@1224|Proteobacteria,2U74H@28211|Alphaproteobacteria,3JV4W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate	coaD	-	2.7.7.3	ko:K00954	ko00770,ko01100,map00770,map01100	M00120	R03035	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_like
SX3_k127_1624141_30	172088.AUGA01000002_gene5814	1.819e-177	559.0	COG0697@1|root,COG0697@2|Bacteria,1P38S@1224|Proteobacteria,2U1BY@28211|Alphaproteobacteria,3JR3W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_1624141_7	1297865.APJD01000005_gene3565	1.061e-306	941.0	COG1167@1|root,COG1167@2|Bacteria,1MVGT@1224|Proteobacteria,2TRK7@28211|Alphaproteobacteria,3JRN2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EK	Bacterial regulatory proteins, gntR family	-	-	-	ko:K00375	-	-	-	-	ko00000,ko03000	-	-	-	Aminotran_1_2,GntR
SX3_k127_1624141_15	1297865.APJD01000005_gene3566	2.905e-264	816.0	COG1073@1|root,COG1765@1|root,COG1073@2|Bacteria,COG1765@2|Bacteria,1N2BT@1224|Proteobacteria,2TQN7@28211|Alphaproteobacteria,3JQSS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	OsmC-like protein	MA20_16590	-	-	ko:K06889,ko:K07397	-	-	-	-	ko00000	-	-	-	Hydrolase_4,OsmC
SX3_k127_1624141_39	1297865.APJD01000005_gene3567	2.941e-152	480.0	COG2041@1|root,COG2041@2|Bacteria,1MWZK@1224|Proteobacteria,2TTCH@28211|Alphaproteobacteria,3JUNV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase molybdopterin binding domain	yuiH	-	-	-	-	-	-	-	-	-	-	-	Oxidored_molyb
SX3_k127_1624141_12	1297865.APJD01000005_gene3568	1.272e-286	880.0	COG0477@1|root,COG0477@2|Bacteria,1MVZG@1224|Proteobacteria,2TRS1@28211|Alphaproteobacteria,3JRAC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	kgtP	-	-	ko:K03761	-	-	-	-	ko00000,ko02000	2.A.1.6.2	-	-	Sugar_tr
SX3_k127_1624141_10	1297865.APJD01000005_gene3569	2.836e-291	899.0	COG2124@1|root,COG2124@2|Bacteria,1MY5H@1224|Proteobacteria,2TR6X@28211|Alphaproteobacteria,3JU3Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	MA20_16575	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_1624141_57	1297865.APJD01000005_gene3570	5.865e-40	149.0	COG1141@1|root,COG1141@2|Bacteria,1MZJU@1224|Proteobacteria,2UCKK@28211|Alphaproteobacteria,3K07G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	4Fe-4S single cluster domain of Ferredoxin I	MA20_16570	-	-	ko:K05337	-	-	-	-	ko00000	-	-	-	Fer4_15
SX3_k127_1624141_44	1297865.APJD01000005_gene3571	1.181e-126	407.0	COG1309@1|root,COG1309@2|Bacteria,1NJ0Y@1224|Proteobacteria,2TVAJ@28211|Alphaproteobacteria,3JRD1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WHG domain	MA20_16565	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
SX3_k127_1624141_6	1297865.APJD01000005_gene3572	1.647e-307	943.0	COG0154@1|root,COG0154@2|Bacteria,1MW3Z@1224|Proteobacteria,2TS56@28211|Alphaproteobacteria,3JS92@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	MA20_16525	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_1624141_28	1297865.APJD01000005_gene3573	1.731e-182	572.0	COG0657@1|root,COG0657@2|Bacteria,1MV3J@1224|Proteobacteria,2TUQ3@28211|Alphaproteobacteria,3JWES@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	alpha/beta hydrolase fold	-	-	3.5.1.9	ko:K01432	ko00380,ko00630,ko01100,map00380,map00630,map01100	M00038	R00988,R01959,R04911	RC00263,RC00323	ko00000,ko00001,ko00002,ko01000	-	-	-	Abhydrolase_3
SX3_k127_1624141_38	1297865.APJD01000005_gene3574	2.698e-161	511.0	COG4221@1|root,COG4221@2|Bacteria,1QW75@1224|Proteobacteria,2TWQR@28211|Alphaproteobacteria,3JTEM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KR domain	MA20_16520	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_1624141_43	1297865.APJD01000005_gene3575	6.531e-135	430.0	COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,2TSBB@28211|Alphaproteobacteria,3JTGC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CE	Isocitrate/isopropylmalate dehydrogenase	MA20_16515	-	1.1.1.83,1.1.1.93,4.1.1.73	ko:K07246	ko00630,ko00650,map00630,map00650	-	R00215,R01751,R02545,R06180	RC00084,RC00105,RC00594	ko00000,ko00001,ko01000	-	-	-	Iso_dh
SX3_k127_1624141_45	1297865.APJD01000005_gene3575	1.437e-99	324.0	COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,2TSBB@28211|Alphaproteobacteria,3JTGC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CE	Isocitrate/isopropylmalate dehydrogenase	MA20_16515	-	1.1.1.83,1.1.1.93,4.1.1.73	ko:K07246	ko00630,ko00650,map00630,map00650	-	R00215,R01751,R02545,R06180	RC00084,RC00105,RC00594	ko00000,ko00001,ko01000	-	-	-	Iso_dh
SX3_k127_1624141_59	1245469.S58_71530	6.435e-18	95.0	2AAGC@1|root,30ZTB@2|Bacteria,1P66Q@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1624141_25	1297865.APJD01000005_gene3576	8.693e-198	617.0	COG0111@1|root,COG0111@2|Bacteria,1NU4B@1224|Proteobacteria,2TSC4@28211|Alphaproteobacteria,3JUK8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	MA20_16500	-	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_1624141_13	1297865.APJD01000005_gene3577	6.069e-274	843.0	COG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2TR5X@28211|Alphaproteobacteria,3JRW2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M20/M25/M40	MA20_16495	-	3.5.1.6,3.5.1.87	ko:K06016	ko00240,ko01100,map00240,map01100	M00046	R00905,R04666	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_1624141_27	1297865.APJD01000005_gene3578	4.129e-192	601.0	COG0583@1|root,COG0583@2|Bacteria,1QU1H@1224|Proteobacteria,2U0TE@28211|Alphaproteobacteria,3JSUK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	MA20_16490	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1624141_34	1297865.APJD01000005_gene3579	6.642e-168	529.0	COG4336@1|root,COG4336@2|Bacteria,1MW52@1224|Proteobacteria,2TST8@28211|Alphaproteobacteria,3JS4D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the D-glutamate cyclase family	MA20_16485	-	-	-	-	-	-	-	-	-	-	-	DUF1445
SX3_k127_1624141_16	1297865.APJD01000005_gene3580	1.43e-261	808.0	COG0683@1|root,COG0683@2|Bacteria,1MWQB@1224|Proteobacteria,2U0KM@28211|Alphaproteobacteria,3JT54@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_16480	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1624141_36	1230476.C207_02378	4.71e-166	528.0	COG0559@1|root,COG0559@2|Bacteria,1N5XH@1224|Proteobacteria,2TSH5@28211|Alphaproteobacteria,3JS0U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_16475	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1624141_24	1297865.APJD01000005_gene3582	7.421e-203	648.0	COG4177@1|root,COG4177@2|Bacteria,1MU52@1224|Proteobacteria,2TSUI@28211|Alphaproteobacteria,3JUMZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1624141_40	1297865.APJD01000005_gene3583	1.986e-149	478.0	COG0411@1|root,COG0411@2|Bacteria,1MUFT@1224|Proteobacteria,2U22X@28211|Alphaproteobacteria,3JRTA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	MA20_16465	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_1624141_52	1382356.JQMP01000001_gene1142	2.4e-64	229.0	COG0410@1|root,COG0410@2|Bacteria,2G69M@200795|Chloroflexi,27Y8Q@189775|Thermomicrobia	189775|Thermomicrobia	E	PFAM ABC transporter related	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_1624141_58	1304877.KI519399_gene4073	4.402e-20	90.0	COG0235@1|root,COG0235@2|Bacteria,1MW7B@1224|Proteobacteria,2TSX7@28211|Alphaproteobacteria,3JUIT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	MA20_16455	-	4.1.1.104	ko:K22130	-	-	-	-	ko00000,ko01000	-	-	-	Aldolase_II
SX3_k127_1624141_41	1297865.APJD01000005_gene3585	3.708e-141	449.0	COG0235@1|root,COG0235@2|Bacteria,1MW7B@1224|Proteobacteria,2TSX7@28211|Alphaproteobacteria,3JUIT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	MA20_16455	-	4.1.1.104	ko:K22130	-	-	-	-	ko00000,ko01000	-	-	-	Aldolase_II
SX3_k127_1624141_29	1297865.APJD01000005_gene3586	3.013e-181	569.0	COG2084@1|root,COG2084@2|Bacteria,1MUD0@1224|Proteobacteria,2TT7P@28211|Alphaproteobacteria,3JT85@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	MA20_16450	-	1.1.1.411	ko:K08319	-	-	-	-	ko00000,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_1624141_31	1297865.APJD01000005_gene3587	1.028e-174	547.0	COG3622@1|root,COG3622@2|Bacteria,1MV53@1224|Proteobacteria,2TSVI@28211|Alphaproteobacteria,3JQMJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the hyi family	MA20_16445	-	5.3.1.35	ko:K22131	-	-	-	-	ko00000,ko01000	-	-	-	AP_endonuc_2
SX3_k127_1624141_14	1297865.APJD01000005_gene3588	7.355e-268	826.0	COG3395@1|root,COG3395@2|Bacteria,1MW4G@1224|Proteobacteria,2TS85@28211|Alphaproteobacteria,3JT3V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative sugar-binding N-terminal domain	-	-	2.7.1.217	ko:K21948	-	-	R11706,R11707	-	ko00000,ko01000	-	-	-	DUF1357_C,DUF1537
SX3_k127_1624141_3	1297865.APJD01000005_gene3589	0.0	1001.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JVHV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Tar ligand binding domain homologue	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	4HB_MCP_1,MCPsignal
SX3_k127_1624141_4	1297865.APJD01000005_gene3590	5.348e-318	979.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSI9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	chemotaxis	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	4HB_MCP_1,MCPsignal
SX3_k127_1624141_0	1297865.APJD01000005_gene3591	0.0	2053.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JTRG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
SX3_k127_1624141_19	1297865.APJD01000005_gene3592	7.795e-238	739.0	COG0845@1|root,COG0845@2|Bacteria,1NQZ0@1224|Proteobacteria,2U105@28211|Alphaproteobacteria,3JUK0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Biotin-lipoyl like	-	-	-	-	-	-	-	-	-	-	-	-	HlyD_D23
SX3_k127_1624141_2	1297865.APJD01000005_gene3593	0.0	1024.0	COG0183@1|root,COG0183@2|Bacteria,1QUU1@1224|Proteobacteria,2U0EW@28211|Alphaproteobacteria,3JR6T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_16420	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	-
SX3_k127_1624141_17	1297865.APJD01000005_gene3594	8.131e-241	746.0	COG2070@1|root,COG2070@2|Bacteria,1MU2F@1224|Proteobacteria,2TRM9@28211|Alphaproteobacteria,3JU1G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	MA20_16415	-	-	-	-	-	-	-	-	-	-	-	NMO
SX3_k127_1624141_26	1297865.APJD01000005_gene3595	1.432e-194	612.0	COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,2TTDF@28211|Alphaproteobacteria,3JTWQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_16405	-	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_C_2,GST_N
SX3_k127_1624141_55	1297865.APJD01000005_gene3596	2.115e-53	190.0	COG2388@1|root,COG2388@2|Bacteria,1N8AQ@1224|Proteobacteria,2VG54@28211|Alphaproteobacteria,3K6I1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GCN5-related N-acetyl-transferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_CG
SX3_k127_1624141_42	1297865.APJD01000005_gene3597	9.817e-137	436.0	COG1853@1|root,COG1853@2|Bacteria,1MXPE@1224|Proteobacteria,2TS7H@28211|Alphaproteobacteria,3JSXQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	MA20_16400	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
SX3_k127_1624141_11	1297865.APJD01000005_gene3598	3.895e-287	883.0	COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,2TSK3@28211|Alphaproteobacteria,3JR07@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_16395	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_1624141_48	1297865.APJD01000005_gene3599	6.447e-76	255.0	COG0346@1|root,COG0346@2|Bacteria,1RH8G@1224|Proteobacteria,2U9BR@28211|Alphaproteobacteria,3JYZN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	COG0346 Lactoylglutathione lyase and related lyases	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_1624141_35	1297865.APJD01000005_gene3600	8.286e-167	525.0	COG1028@1|root,COG1028@2|Bacteria,1MWGK@1224|Proteobacteria,2TVQ8@28211|Alphaproteobacteria,3JQVW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	NAD dependent epimerase/dehydratase family	MA20_16385	-	1.1.1.69	ko:K00046	-	-	-	-	ko00000,ko01000	-	-	-	adh_short_C2
SX3_k127_1624141_32	1297865.APJD01000005_gene3601	2.335e-171	540.0	COG1024@1|root,COG1024@2|Bacteria,1MVQN@1224|Proteobacteria,2TUXD@28211|Alphaproteobacteria,3JSP8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase	MA20_16380	-	5.3.3.18	ko:K15866	ko00360,ko01120,map00360,map01120	-	R09837,R09839	RC00004,RC00326,RC02689,RC03003	ko00000,ko00001,ko01000	-	-	-	ECH_1
SX3_k127_1624141_21	1297865.APJD01000005_gene3602	1.43e-221	690.0	COG3173@1|root,COG3173@2|Bacteria,1MY0Y@1224|Proteobacteria,2TRMW@28211|Alphaproteobacteria,3JSBA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phosphotransferase enzyme family	MA20_16375	-	-	-	-	-	-	-	-	-	-	-	APH
SX3_k127_1624141_50	1297865.APJD01000005_gene3603	4.89e-75	253.0	COG3173@1|root,COG3173@2|Bacteria,1QW8D@1224|Proteobacteria,2TWSN@28211|Alphaproteobacteria,3K6NI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aminoglycoside phosphotransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1624141_37	1297865.APJD01000005_gene3604	2.449e-165	521.0	COG1024@1|root,COG1024@2|Bacteria,1MWZC@1224|Proteobacteria,2TRIH@28211|Alphaproteobacteria,3JRFJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	MA20_16365	-	4.2.1.149	ko:K08299	-	-	R10675	RC01095	ko00000,ko01000	-	-	-	ECH_1
SX3_k127_1624141_9	1297865.APJD01000005_gene3605	1.442e-291	895.0	COG1960@1|root,COG1960@2|Bacteria,1MWUU@1224|Proteobacteria,2TT47@28211|Alphaproteobacteria,3JS9P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_16360	-	1.3.8.1,1.3.8.7	ko:K00248,ko:K00249	ko00071,ko00280,ko00410,ko00640,ko00650,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map00650,map01100,map01110,map01120,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01178,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00120,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_1624141_1	1297865.APJD01000005_gene3606	0.0	1066.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JS0G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_16355	-	6.2.1.3	ko:K00666,ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_1633900_3	1297865.APJD01000028_gene5245	2.865e-159	502.0	COG0777@1|root,COG0777@2|Bacteria,1MW8G@1224|Proteobacteria,2TRSH@28211|Alphaproteobacteria,3JSZ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA	accD	-	2.1.3.15,6.4.1.2	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
SX3_k127_1633900_1	1297865.APJD01000028_gene5246	3.748e-284	888.0	COG0285@1|root,COG0285@2|Bacteria,1MVCH@1224|Proteobacteria,2TR64@28211|Alphaproteobacteria,3JTEY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the folylpolyglutamate synthase family	folC	-	6.3.2.12,6.3.2.17	ko:K11754	ko00790,ko01100,map00790,map01100	M00126,M00841	R00942,R02237,R04241	RC00064,RC00090,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	Mur_ligase_M
SX3_k127_1633900_2	1297865.APJD01000028_gene5247	3.694e-162	511.0	COG0639@1|root,COG0639@2|Bacteria,1N4BG@1224|Proteobacteria,2TR4D@28211|Alphaproteobacteria,3JSJP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Calcineurin-like phosphoesterase superfamily domain	MA20_24125	-	-	-	-	-	-	-	-	-	-	-	Metallophos_2
SX3_k127_1633900_4	172088.AUGA01000027_gene106	9.162e-64	220.0	COG3118@1|root,COG3118@2|Bacteria,1MZBB@1224|Proteobacteria,2UCCR@28211|Alphaproteobacteria,3JYUR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the thioredoxin family	trxA	-	-	ko:K03671	ko04621,ko05418,map04621,map05418	-	-	-	ko00000,ko00001,ko03110	-	-	-	Thioredoxin
SX3_k127_1633900_0	1297865.APJD01000028_gene5249	0.0	1446.0	COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,2TQJZ@28211|Alphaproteobacteria,3JSGA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the helicase family. UvrD subfamily	addA	-	3.6.4.12	ko:K16898	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	PDDEXK_1,UvrD-helicase,UvrD_C
SX3_k127_1655750_6	1297865.APJD01000006_gene4386	1.166e-123	397.0	COG2216@1|root,COG2216@2|Bacteria,1MU7D@1224|Proteobacteria,2TREM@28211|Alphaproteobacteria,3JQUQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system	kdpB	-	3.6.3.12	ko:K01547	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	3.A.3.7	-	-	E1-E2_ATPase,Hydrolase
SX3_k127_1655750_7	1297865.APJD01000006_gene4387	1.843e-118	382.0	COG2156@1|root,COG2156@2|Bacteria,1RABG@1224|Proteobacteria,2TSQ7@28211|Alphaproteobacteria,3JSZV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex	kdpC	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044425,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132	3.6.3.12	ko:K01548	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	3.A.3.7	-	-	KdpC
SX3_k127_1655750_2	1297865.APJD01000006_gene4388	0.0	1752.0	COG0642@1|root,COG2205@2|Bacteria,1MUZQ@1224|Proteobacteria,2TSS7@28211|Alphaproteobacteria,3JSNS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Osmosensitive K+ channel His kinase sensor domain	kdpD	-	2.7.13.3	ko:K07646	ko02020,map02020	M00454	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	DUF4118,GAF_3,HATPase_c,HisKA,KdpD,Usp
SX3_k127_1655750_5	1297865.APJD01000006_gene4389	1.287e-140	458.0	COG0745@1|root,COG0745@2|Bacteria,1MWZ5@1224|Proteobacteria,2TV3A@28211|Alphaproteobacteria,3JTFA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	kdpE	-	-	ko:K07667	ko02020,ko02024,map02020,map02024	M00454	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_1655750_9	398525.KB900701_gene6846	2.671e-24	107.0	2EIK5@1|root,33CBF@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1655750_4	1297865.APJD01000006_gene4391	4.875e-182	572.0	COG1273@1|root,COG1273@2|Bacteria,1N4UX@1224|Proteobacteria,2TRTI@28211|Alphaproteobacteria,3JVAZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD	ku	-	-	ko:K10979	ko03450,map03450	-	-	-	ko00000,ko00001,ko03400	-	-	-	Ku
SX3_k127_1655750_1	1297865.APJD01000006_gene4392	0.0	1795.0	COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,1MVWY@1224|Proteobacteria,2TRSZ@28211|Alphaproteobacteria,3JR3Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA ligase	ligD	-	6.5.1.1	ko:K01971	ko03450,map03450	-	R00381	RC00005	ko00000,ko00001,ko01000,ko03400	-	-	-	DNA_ligase_A_C,DNA_ligase_A_M,LigD_N
SX3_k127_1655750_8	1297865.APJD01000006_gene4394	1.531e-58	203.0	2E9WT@1|root,3342I@2|Bacteria,1NBEH@1224|Proteobacteria,2UFGC@28211|Alphaproteobacteria,3JZIT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)	MA20_00895	-	-	-	-	-	-	-	-	-	-	-	PHA_gran_rgn
SX3_k127_1655750_0	1297865.APJD01000006_gene4395	0.0	1903.0	COG3280@1|root,COG3280@2|Bacteria,1QTVK@1224|Proteobacteria,2TW4J@28211|Alphaproteobacteria,3JS6B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Alpha amylase, catalytic domain	treY	-	5.4.99.15	ko:K06044	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R01824,R09995	-	ko00000,ko00001,ko00002,ko01000	-	GH13	-	Alpha-amylase
SX3_k127_1655750_3	1297865.APJD01000006_gene4396	2.154e-199	620.0	COG0296@1|root,COG0296@2|Bacteria,1MVM7@1224|Proteobacteria,2TQUJ@28211|Alphaproteobacteria,3JUR0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	4-alpha-D-((1- 4)-alpha-D-glucano)trehalose trehalohydrolase	treZ	-	2.4.1.18,3.2.1.141	ko:K00700,ko:K01236	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R02110,R09995,R11256	RC00049	ko00000,ko00001,ko00002,ko01000,ko04147	-	CBM48,GH13	-	Alpha-amylase,CBM_48,DUF3459
SX3_k127_1660257_9	1297865.APJD01000019_gene3337	1.15e-158	502.0	COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,2TSPI@28211|Alphaproteobacteria,3JTZ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Uncharacterised MFS-type transporter YbfB	araJ	-	-	ko:K19577	-	-	-	-	ko00000,ko02000	2.A.1.2.65	-	-	MFS_1
SX3_k127_1660257_7	1297865.APJD01000019_gene3338	1.376e-226	703.0	COG0667@1|root,COG0667@2|Bacteria,1MV2Y@1224|Proteobacteria,2TS02@28211|Alphaproteobacteria,3JT9N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldo/keto reductase family	mocA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0017144,GO:0034641,GO:0042723,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:1901360,GO:1901564	1.1.1.91	ko:K05882	-	-	-	-	ko00000,ko01000	-	-	-	Aldo_ket_red
SX3_k127_1660257_8	1297865.APJD01000019_gene3339	4.631e-201	629.0	COG4977@1|root,COG4977@2|Bacteria,1MXZQ@1224|Proteobacteria,2U0GT@28211|Alphaproteobacteria,3JUZN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K07506	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18,HTH_AraC
SX3_k127_1660257_1	1297865.APJD01000019_gene3340	0.0	1177.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TRG4@28211|Alphaproteobacteria,3JSRW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	-	-	1.14.13.226	ko:K18371	ko00640,map00640	-	R10704	RC03250	ko00000,ko00001,ko01000	-	-	-	FMO-like,Pyr_redox_2,Pyr_redox_3
SX3_k127_1660257_3	1230476.C207_06378	3.02e-261	809.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JTME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	ko:K18372	ko00640,map00640	-	R10705	RC00460,RC00461	ko00000,ko00001,ko01000	-	-	-	Beta-lactamase,DUF3471
SX3_k127_1660257_2	1297865.APJD01000019_gene3342	1.029e-288	891.0	COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,2TVIP@28211|Alphaproteobacteria,3JVWW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
SX3_k127_1660257_10	1297865.APJD01000019_gene3343	8.96e-139	441.0	COG0745@1|root,COG0745@2|Bacteria,1NCKY@1224|Proteobacteria,2TRPQ@28211|Alphaproteobacteria,3JVV7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
SX3_k127_1660257_12	1297865.APJD01000019_gene3344	1.029e-124	399.0	COG3963@1|root,COG3963@2|Bacteria,1N1KB@1224|Proteobacteria,2U646@28211|Alphaproteobacteria,3JSCT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Ribosomal RNA adenine dimethylase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25,RrnaAD
SX3_k127_1660257_11	1297865.APJD01000019_gene3345	3.042e-134	435.0	COG0586@1|root,COG0586@2|Bacteria,1MX4M@1224|Proteobacteria,2U6ZF@28211|Alphaproteobacteria,3JWK1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SNARE associated Golgi protein	-	-	3.1.3.1	ko:K01077	ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020	M00126	R02135,R04620	RC00017	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147	-	-	-	SNARE_assoc
SX3_k127_1660257_5	1297865.APJD01000019_gene3346	6.737e-238	748.0	COG2908@1|root,COG2908@2|Bacteria,1MVKD@1224|Proteobacteria,2TSEB@28211|Alphaproteobacteria,3JXX6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase superfamily domain	lpxH	-	-	-	-	-	-	-	-	-	-	-	Metallophos,Metallophos_2
SX3_k127_1660257_6	1297865.APJD01000019_gene3347	8.991e-229	709.0	COG0438@1|root,COG0438@2|Bacteria,1MUB7@1224|Proteobacteria,2TQQ0@28211|Alphaproteobacteria,3JTNY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	glycosyl transferase group 1	mgtA	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_1660257_4	1297865.APJD01000019_gene3348	4.282e-243	751.0	COG0498@1|root,COG0498@2|Bacteria,1R7X1@1224|Proteobacteria,2TUR3@28211|Alphaproteobacteria,3JTSA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	MA20_04465	-	4.2.3.1	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	M00018	R01466,R05086	RC00017,RC00526	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_1660257_0	1297865.APJD01000019_gene3349	0.0	1418.0	COG0365@1|root,COG0365@2|Bacteria,1MUX7@1224|Proteobacteria,2TRND@28211|Alphaproteobacteria,3JQRB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acetyl-coenzyme A synthetase N-terminus	-	-	6.2.1.16	ko:K01907	ko00280,ko00650,map00280,map00650	-	R01357	RC00004,RC00014	ko00000,ko00001,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
SX3_k127_1660257_13	1297865.APJD01000019_gene3350	9.301e-57	198.0	COG1472@1|root,COG1472@2|Bacteria,1NSMF@1224|Proteobacteria,2U3SF@28211|Alphaproteobacteria,3JUCU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glycosyl hydrolase family 3 N terminal domain	-	-	3.2.1.52	ko:K01207	ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501	M00628	R00022,R05963,R07809,R07810,R10831	RC00049	ko00000,ko00001,ko00002,ko01000	-	-	-	Glyco_hydro_3
SX3_k127_1666562_6	1297865.APJD01000011_gene6675	1.531e-36	138.0	COG0683@1|root,COG0683@2|Bacteria,1MV1Z@1224|Proteobacteria,2TRTD@28211|Alphaproteobacteria,3JS33@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1666562_4	1297865.APJD01000011_gene6674	3.639e-258	799.0	COG0683@1|root,COG0683@2|Bacteria,1MV1Z@1224|Proteobacteria,2TRTD@28211|Alphaproteobacteria,3JS33@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_18620	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1666562_0	1297865.APJD01000011_gene6673	7.235e-272	838.0	COG0683@1|root,COG0683@2|Bacteria,1MV1Z@1224|Proteobacteria,2TRTD@28211|Alphaproteobacteria,3JRR8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_1666562_2	1297865.APJD01000011_gene6672	5.173e-267	825.0	COG0683@1|root,COG0683@2|Bacteria,1MV1Z@1224|Proteobacteria,2TRTD@28211|Alphaproteobacteria,3JRR8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1666562_1	1297865.APJD01000011_gene6671	4.776e-269	830.0	COG0683@1|root,COG0683@2|Bacteria,1MV1A@1224|Proteobacteria,2U134@28211|Alphaproteobacteria,3JU6P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_1666562_3	1297865.APJD01000011_gene6670	5.28e-264	816.0	COG2379@1|root,COG2379@2|Bacteria,1MVIK@1224|Proteobacteria,2TQJY@28211|Alphaproteobacteria,3JREE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	MOFRL family	MA20_18630	-	2.7.1.165	ko:K11529	ko00030,ko00260,ko00561,ko00630,ko00680,ko01100,ko01120,ko01130,ko01200,map00030,map00260,map00561,map00630,map00680,map01100,map01120,map01130,map01200	M00346	R08572	RC00002,RC00428	ko00000,ko00001,ko00002,ko01000	-	-	-	DUF4147,MOFRL
SX3_k127_1666562_5	172088.AUGA01000001_gene6652	2.608e-100	329.0	COG1846@1|root,COG1846@2|Bacteria,1N7PQ@1224|Proteobacteria,2UF5S@28211|Alphaproteobacteria,3JW0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	MA20_18635	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_1666562_7	318996.AXAZ01000059_gene1205	1.472e-20	93.0	COG0559@1|root,COG0559@2|Bacteria,1MXMC@1224|Proteobacteria,2TRYG@28211|Alphaproteobacteria,3JTK3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_18640	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1668753_1	1297865.APJD01000002_gene4045	0.0	1407.0	COG1251@1|root,COG1251@2|Bacteria,1MW58@1224|Proteobacteria,2TS8I@28211|Alphaproteobacteria,3JRH5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Pyridine nucleotide-disulphide oxidoreductase	nirB	-	1.2.1.58,1.7.1.15	ko:K00362,ko:K18359	ko00360,ko00910,ko01120,map00360,map00910,map01120	M00530	R00787,R02450	RC00004,RC00176,RC02860	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_BFD,NIR_SIR,NIR_SIR_ferr,Pyr_redox_2,Rieske_2
SX3_k127_1668753_8	1297865.APJD01000002_gene4046	3.296e-68	235.0	COG2146@1|root,COG2146@2|Bacteria,1N03R@1224|Proteobacteria,2UC33@28211|Alphaproteobacteria,3JZ5G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske-like [2Fe-2S] domain	nirD	-	1.7.1.15	ko:K00363	ko00910,ko01120,map00910,map01120	M00530	R00787	RC00176	ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,Rieske_2
SX3_k127_1668753_0	1297865.APJD01000002_gene4047	0.0	1840.0	COG0243@1|root,COG0243@2|Bacteria,1NS3T@1224|Proteobacteria,2TQYD@28211|Alphaproteobacteria,3JUBJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family	nasA	-	-	ko:K00372	ko00910,ko01120,map00910,map01120	M00531	R00798,R01106	RC02812	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_BFD,Molybdop_Fe4S4,Molybdopterin,Molydop_binding
SX3_k127_1668753_9	1297865.APJD01000002_gene4048	3.406e-46	167.0	29EAS@1|root,3018S@2|Bacteria,1N6KW@1224|Proteobacteria,2UBYA@28211|Alphaproteobacteria,3K0FI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1668753_2	1297865.APJD01000002_gene4049	1.345e-273	844.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,3JSEP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_31055	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_1668753_5	1297865.APJD01000002_gene4050	1.051e-150	477.0	COG3246@1|root,COG3246@2|Bacteria,1NZS9@1224|Proteobacteria,2U35R@28211|Alphaproteobacteria,3JZMF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	beta-keto acid cleavage enzyme	-	-	-	-	-	-	-	-	-	-	-	-	BKACE
SX3_k127_1668753_7	1230476.C207_01652	5.669e-80	267.0	COG0251@1|root,COG0251@2|Bacteria,1MZ0F@1224|Proteobacteria,2U5WF@28211|Alphaproteobacteria,3JYJM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	-	-	3.5.99.10	ko:K09022	-	-	R11098,R11099	RC03275,RC03354	ko00000,ko01000	-	-	-	Ribonuc_L-PSP
SX3_k127_1668753_4	1297865.APJD01000002_gene4052	1.032e-179	566.0	COG2503@1|root,COG2503@2|Bacteria,1R4QB@1224|Proteobacteria,2U268@28211|Alphaproteobacteria,3K2R1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HAD superfamily, subfamily IIIB (Acid phosphatase)	-	-	-	-	-	-	-	-	-	-	-	-	Acid_phosphat_B
SX3_k127_1668753_6	1297865.APJD01000002_gene4053	4.185e-141	453.0	COG1309@1|root,COG1309@2|Bacteria,1RDIM@1224|Proteobacteria,2VEVK@28211|Alphaproteobacteria,3JVA7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_31040	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1668753_3	1297865.APJD01000002_gene4054	1.325e-272	844.0	COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,2TSK3@28211|Alphaproteobacteria,3JTM1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_31035	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_1685256_2	1297865.APJD01000002_gene4159	5.511e-177	557.0	COG0697@1|root,COG0697@2|Bacteria,1MXX1@1224|Proteobacteria,2TQN0@28211|Alphaproteobacteria,3JTCS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_35620	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_1685256_0	1297865.APJD01000002_gene4160	0.0	1699.0	COG2202@1|root,COG4191@1|root,COG2202@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQTN@28211|Alphaproteobacteria,3JRHF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	MA20_35625	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_4,PAS_8
SX3_k127_1685256_3	1220582.RRU01S_37_00260	2.886e-159	513.0	COG4325@1|root,COG4325@2|Bacteria,1MXTM@1224|Proteobacteria,2TRWI@28211|Alphaproteobacteria,4BD3W@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Predicted membrane protein (DUF2254)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2254
SX3_k127_1685256_10	1297865.APJD01000002_gene4162	2.456e-69	243.0	2A59E@1|root,30W9E@2|Bacteria,1RDCU@1224|Proteobacteria,2U70P@28211|Alphaproteobacteria,3JYP5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	T3SS negative regulator,GrlR	MA20_35630	-	-	-	-	-	-	-	-	-	-	-	GrlR
SX3_k127_1685256_7	1230476.C207_06038	1.217e-85	284.0	2A78J@1|root,30W51@2|Bacteria,1RCYY@1224|Proteobacteria,2U7AT@28211|Alphaproteobacteria,3JYRN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1685256_8	398525.KB900701_gene5567	2.063e-84	287.0	COG0346@1|root,COG0346@2|Bacteria,1RB65@1224|Proteobacteria,2U7DP@28211|Alphaproteobacteria,3JYA1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	MA20_35640	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase,Glyoxalase_4
SX3_k127_1685256_5	172088.AUGA01000021_gene5177	2.167e-96	319.0	2C1CQ@1|root,3007V@2|Bacteria,1R1FC@1224|Proteobacteria,2U0RM@28211|Alphaproteobacteria,3JT3M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1685256_4	1297865.APJD01000002_gene4166	1.525e-104	343.0	2A7IM@1|root,30WGD@2|Bacteria,1RE0E@1224|Proteobacteria,2U7MM@28211|Alphaproteobacteria,3JYQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1685256_9	1297865.APJD01000002_gene4167	1.263e-79	267.0	2A7JW@1|root,30WHS@2|Bacteria,1RE3G@1224|Proteobacteria,2U57U@28211|Alphaproteobacteria,3JZ1U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1685256_1	1297865.APJD01000002_gene4168	3.014e-184	577.0	COG0190@1|root,COG0190@2|Bacteria,1MWU4@1224|Proteobacteria,2TRZZ@28211|Alphaproteobacteria,3JWHH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	folD	-	1.5.1.5,3.5.4.9	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R01220,R01655	RC00202,RC00578	ko00000,ko00001,ko00002,ko01000	-	-	-	THF_DHG_CYH,THF_DHG_CYH_C
SX3_k127_1685256_6	1297865.APJD01000002_gene4169	1.818e-92	304.0	COG2030@1|root,COG2030@2|Bacteria,1RC3B@1224|Proteobacteria,2U6SZ@28211|Alphaproteobacteria,3JY30@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	MaoC like domain	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
SX3_k127_1685256_11	1297865.APJD01000002_gene4170	2.024e-62	216.0	COG1695@1|root,COG1695@2|Bacteria,1N0PH@1224|Proteobacteria,2UBD4@28211|Alphaproteobacteria,3JZHS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator PadR-like family	-	-	-	ko:K10947	-	-	-	-	ko00000,ko03000	-	-	-	PadR
SX3_k127_1685256_12	1297865.APJD01000002_gene4171	3.594e-45	166.0	COG4709@1|root,COG4709@2|Bacteria,1RAQB@1224|Proteobacteria,2U62C@28211|Alphaproteobacteria,3JZ18@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1700)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1700
SX3_k127_1686494_5	323098.Nwi_1493	1.269e-08	56.0	COG3598@1|root,COG3598@2|Bacteria,1R4GJ@1224|Proteobacteria,2TUNT@28211|Alphaproteobacteria,3K03G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	TOPRIM	-	-	-	-	-	-	-	-	-	-	-	-	AAA_25
SX3_k127_1686494_2	452662.SJA_C1-20000	5.29e-101	333.0	2AJHN@1|root,31A47@2|Bacteria,1NVHI@1224|Proteobacteria,2URMA@28211|Alphaproteobacteria,2K5KE@204457|Sphingomonadales	204457|Sphingomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1686494_3	1320556.AVBP01000003_gene3892	1.371e-70	244.0	COG3905@1|root,COG3905@2|Bacteria,1MXJX@1224|Proteobacteria,2U7AR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	copG family	-	-	-	-	-	-	-	-	-	-	-	-	RHH_1
SX3_k127_1686494_0	1304878.AUGD01000045_gene5348	0.0	1338.0	COG3505@1|root,COG3505@2|Bacteria,1MV1G@1224|Proteobacteria,2TR6N@28211|Alphaproteobacteria,3JRBG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PFAM TRAG family protein	-	-	-	ko:K03205	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	T4SS-DNA_transf
SX3_k127_1686494_1	1304878.AUGD01000039_gene5382	0.0	1059.0	COG3843@1|root,COG3843@2|Bacteria,1MU0S@1224|Proteobacteria,2TSP8@28211|Alphaproteobacteria,3JSRJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Protein of unknown function (DUF3363)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3363
SX3_k127_1686494_4	1297865.APJD01000065_gene3480	7.144e-31	121.0	COG0741@1|root,COG0741@2|Bacteria	2|Bacteria	M	lytic transglycosylase activity	-	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_1696743_2	1297865.APJD01000018_gene5746	4.933e-182	569.0	COG0667@1|root,COG0667@2|Bacteria,1MWGQ@1224|Proteobacteria,2TUJ8@28211|Alphaproteobacteria,3JRSP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldo/keto reductase family	-	-	1.1.1.122	ko:K00064	ko00051,ko00053,ko01100,ko01110,ko01120,map00051,map00053,map01100,map01110,map01120	M00114	R07675,R08926	RC00066,RC00161	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldo_ket_red
SX3_k127_1696743_1	1297865.APJD01000018_gene5747	5.432e-186	582.0	COG3618@1|root,COG3618@2|Bacteria,1P5PT@1224|Proteobacteria,2U3BR@28211|Alphaproteobacteria,3JU4M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	ko:K07046	ko00051,ko01120,map00051,map01120	-	R10689	RC00537	ko00000,ko00001,ko01000	-	-	-	Amidohydro_2
SX3_k127_1696743_0	1297865.APJD01000018_gene5748	0.0	1517.0	COG2183@1|root,COG2183@2|Bacteria,1MUA7@1224|Proteobacteria,2TTSC@28211|Alphaproteobacteria,3JST7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Tex-like protein N-terminal domain	tex	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896	-	ko:K06959	-	-	-	-	ko00000	-	-	-	HHH_3,S1,Tex_N,Tex_YqgF
SX3_k127_1696743_3	1297865.APJD01000018_gene5749	7.028e-66	224.0	2CDIE@1|root,33QUZ@2|Bacteria,1MUZ0@1224|Proteobacteria,2U4E7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1722505_0	1297865.APJD01000011_gene6626	0.0	1268.0	COG0318@1|root,COG0318@2|Bacteria,1MUQZ@1224|Proteobacteria,2TRV7@28211|Alphaproteobacteria,3JRYR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	MA20_06730	-	6.2.1.34	ko:K12508	-	-	-	-	ko00000,ko01000	-	-	-	AMP-binding
SX3_k127_1722505_1	1297865.APJD01000011_gene6625	1.514e-169	533.0	COG1024@1|root,COG1024@2|Bacteria,1MXHV@1224|Proteobacteria,2TTEG@28211|Alphaproteobacteria,3JT1F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	MA20_06735	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_1722505_3	1297865.APJD01000011_gene6624	1.724e-144	474.0	COG1028@1|root,COG1028@2|Bacteria,1MUBQ@1224|Proteobacteria,2TRPN@28211|Alphaproteobacteria,3JU36@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_06740	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_1722505_2	1230476.C207_06667	2.407e-145	462.0	COG1309@1|root,COG1309@2|Bacteria,1MX0H@1224|Proteobacteria,2U08M@28211|Alphaproteobacteria,3JUKN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator, TetR, C-terminal	MA20_06745	-	-	-	-	-	-	-	-	-	-	-	TetR_C_9,TetR_N
SX3_k127_1722505_4	1297865.APJD01000011_gene6622	3.974e-14	73.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TSA0@28211|Alphaproteobacteria,3JQM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_06750	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_1722642_6	1297865.APJD01000012_gene1302	1.6e-135	432.0	COG4291@1|root,COG4291@2|Bacteria,1RGUF@1224|Proteobacteria,2TRCQ@28211|Alphaproteobacteria,3JS4S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1345)	MA20_23190	-	-	-	-	-	-	-	-	-	-	-	DUF1345
SX3_k127_1722642_0	1297865.APJD01000012_gene1301	0.0	1166.0	COG4249@1|root,COG4249@2|Bacteria,1MXFD@1224|Proteobacteria,2TRW5@28211|Alphaproteobacteria,3JQPH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
SX3_k127_1722642_9	1297865.APJD01000012_gene1300	7.447e-70	244.0	2CFZD@1|root,34B4A@2|Bacteria,1RIU6@1224|Proteobacteria,2UCSA@28211|Alphaproteobacteria,3K0E4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1722642_7	172088.AUGA01000006_gene8127	4.281e-82	279.0	COG3791@1|root,COG3791@2|Bacteria,1N031@1224|Proteobacteria,2U764@28211|Alphaproteobacteria,3JXS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
SX3_k127_1722642_8	1230476.C207_03754	5.927e-73	246.0	2AK6F@1|root,31AWH@2|Bacteria,1QW6W@1224|Proteobacteria,2TWQG@28211|Alphaproteobacteria,3JY6U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative lumazine-binding	MA20_23205	-	-	-	-	-	-	-	-	-	-	-	Lumazine_bd_2
SX3_k127_1722642_1	1297865.APJD01000012_gene1297	0.0	1028.0	COG0025@1|root,COG0025@2|Bacteria,1MW5T@1224|Proteobacteria,2TSHB@28211|Alphaproteobacteria,3JRMP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sodium/hydrogen exchanger family	MA20_23215	-	-	ko:K03316	-	-	-	-	ko00000	2.A.36	-	-	Na_H_Exchanger
SX3_k127_1722642_2	398525.KB900701_gene1252	2.66e-307	942.0	COG4638@1|root,COG4638@2|Bacteria,1MX47@1224|Proteobacteria,2TV03@28211|Alphaproteobacteria,3JTQC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
SX3_k127_1722642_4	1297865.APJD01000035_gene5498	1.798e-206	642.0	COG2175@1|root,COG2175@2|Bacteria,1MV5K@1224|Proteobacteria,2TQTZ@28211|Alphaproteobacteria,3JWFY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Taurine catabolism dioxygenase TauD, TfdA family	MA20_23235	-	1.14.11.17	ko:K03119	ko00430,ko00920,map00430,map00920	-	R05320	RC01331	ko00000,ko00001,ko01000	-	-	-	TauD
SX3_k127_1722642_3	1297865.APJD01000035_gene5497	1.368e-278	857.0	COG0821@1|root,COG0821@2|Bacteria,1MUAX@1224|Proteobacteria,2TQSI@28211|Alphaproteobacteria,3JRWP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate	ispG	GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576	1.17.7.1,1.17.7.3	ko:K03526	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R08689,R10859	RC01486	ko00000,ko00001,ko00002,ko01000	-	-	-	GcpE
SX3_k127_1722642_5	1297865.APJD01000035_gene5496	3.369e-194	606.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TTCU@28211|Alphaproteobacteria,3JTP9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	-	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_1725417_13	883078.HMPREF9695_03849	3.135e-50	181.0	COG0642@1|root,COG2205@2|Bacteria,1QTVU@1224|Proteobacteria,2TW3R@28211|Alphaproteobacteria,3K314@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c
SX3_k127_1725417_8	1304878.AUGD01000030_gene3670	2.872e-136	434.0	COG0745@1|root,COG0745@2|Bacteria,1MY5Y@1224|Proteobacteria,2U4YV@28211|Alphaproteobacteria,3JXWC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	Transcriptional regulatory protein, C terminal	-	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_1725417_3	883078.HMPREF9695_03851	2.749e-253	784.0	COG1538@1|root,COG1538@2|Bacteria,1R5QE@1224|Proteobacteria,2U1J8@28211|Alphaproteobacteria,3JXCR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	OEP
SX3_k127_1725417_0	883078.HMPREF9695_03852	0.0	2044.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2U1WP@28211|Alphaproteobacteria,3JTMP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	AcrB/AcrD/AcrF family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
SX3_k127_1725417_9	883078.HMPREF9695_03854	2.283e-132	424.0	COG1814@1|root,COG1814@2|Bacteria,1MUZE@1224|Proteobacteria,2TT6M@28211|Alphaproteobacteria,3JRM0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	VIT family	-	-	-	-	-	-	-	-	-	-	-	-	VIT1
SX3_k127_1725417_15	1185766.DL1_16670	7.538e-40	150.0	2EGIV@1|root,33AB2@2|Bacteria,1NHS9@1224|Proteobacteria,2UJHH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PilZ domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_1725417_14	883078.HMPREF9695_03856	5.738e-45	170.0	2AGWW@1|root,3175A@2|Bacteria,1NJ52@1224|Proteobacteria,2UN7Q@28211|Alphaproteobacteria,3K5MD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1725417_1	1304878.AUGD01000030_gene3666	0.0	1757.0	COG0474@1|root,COG0474@2|Bacteria,1MUU5@1224|Proteobacteria,2TRZD@28211|Alphaproteobacteria,3JR79@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPase, P-type (transporting), HAD superfamily, subfamily IC	mgtA	-	3.6.3.2	ko:K01531	-	-	-	-	ko00000,ko01000	3.A.3.4	-	-	Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase
SX3_k127_1725417_2	883078.HMPREF9695_03860	0.0	1491.0	COG3637@1|root,COG3659@1|root,COG3637@2|Bacteria,COG3659@2|Bacteria,1Q8C7@1224|Proteobacteria,2TU66@28211|Alphaproteobacteria,3JRBM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Carbohydrate-selective porin, OprB family	-	-	-	ko:K16080	-	-	-	-	ko00000,ko02000	1.B.4.2.2	-	-	OMP_b-brl,OprB
SX3_k127_1725417_6	883078.HMPREF9695_03861	6.097e-143	455.0	COG1285@1|root,COG1285@2|Bacteria,1MURJ@1224|Proteobacteria,2TT5N@28211|Alphaproteobacteria,3JVDS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MgtC family	-	-	-	ko:K07507	-	-	-	-	ko00000,ko02000	9.B.20	-	-	MgtC
SX3_k127_1725417_4	1304878.AUGD01000030_gene3663	8.834e-211	657.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,3JU58@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phospho-acceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA,PAS_3,PAS_4,PAS_8,dCache_1
SX3_k127_1725417_10	883078.HMPREF9695_03863	2.156e-127	408.0	COG4566@1|root,COG4566@2|Bacteria,1R47Z@1224|Proteobacteria,2TSQS@28211|Alphaproteobacteria,3JQPG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_1725417_5	883078.HMPREF9695_03864	1.594e-181	572.0	COG0583@1|root,COG0583@2|Bacteria,1PM16@1224|Proteobacteria,2U1M0@28211|Alphaproteobacteria,3JWTD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1725417_18	266835.14026545	3.57e-11	66.0	COG5639@1|root,COG5639@2|Bacteria	2|Bacteria	G	conserved small protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF2274
SX3_k127_1725417_7	1297865.APJD01000035_gene5436	7.072e-138	439.0	COG2948@1|root,COG2948@2|Bacteria,1MU7U@1224|Proteobacteria,2TRRR@28211|Alphaproteobacteria,3JRQC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PFAM conjugation TrbI family protein	-	-	-	ko:K20533	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	TrbI
SX3_k127_1725708_9	1297865.APJD01000005_gene3515	2.604e-75	256.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JRYN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	MA20_16805	-	-	ko:K18138,ko:K18307	ko01501,ko01503,ko02024,map01501,map01503,map02024	M00644,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2,2.A.6.2.20,2.A.6.2.32	-	-	ACR_tran
SX3_k127_1725708_3	1297865.APJD01000005_gene3514	6.673e-250	772.0	COG0845@1|root,COG0845@2|Bacteria,1MUFW@1224|Proteobacteria,2U2CU@28211|Alphaproteobacteria,3JQRQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	MA20_16810	-	-	ko:K18306	ko02024,map02024	M00644	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2.20,2.A.6.2.32,8.A.1	-	-	HlyD_D23
SX3_k127_1725708_5	1297865.APJD01000005_gene3513	4.624e-137	440.0	COG1309@1|root,COG1309@2|Bacteria,1MUE2@1224|Proteobacteria,2TT72@28211|Alphaproteobacteria,3JU93@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_16815	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_1725708_7	1297865.APJD01000005_gene3512	7.738e-119	384.0	COG0028@1|root,COG0028@2|Bacteria,1R6QP@1224|Proteobacteria,2TXAJ@28211|Alphaproteobacteria,3JUDG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	MA20_16820	-	-	-	-	-	-	-	-	-	-	-	TPP_enzyme_C
SX3_k127_1725708_8	1297865.APJD01000005_gene3511	4.616e-108	351.0	COG4032@1|root,COG4032@2|Bacteria,1P0HU@1224|Proteobacteria,2TRJ2@28211|Alphaproteobacteria,3JQMU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	MA20_16825	-	4.1.1.79	ko:K06034	ko00680,ko01120,map00680,map01120	M00358	R05774	RC00506	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_N
SX3_k127_1725708_0	1297865.APJD01000005_gene3510	1.207e-272	844.0	COG2124@1|root,COG2124@2|Bacteria,1MY5H@1224|Proteobacteria,2TTRR@28211|Alphaproteobacteria,3JVM6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	MA20_16830	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_1725708_6	1297865.APJD01000005_gene3509	5.78e-126	406.0	COG1226@1|root,32Y28@2|Bacteria,1NEAT@1224|Proteobacteria,2U33B@28211|Alphaproteobacteria,3JXU3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ion channel	-	-	-	-	-	-	-	-	-	-	-	-	Ion_trans_2
SX3_k127_1725708_1	1297865.APJD01000005_gene3508	1.137e-266	821.0	COG4992@1|root,COG4992@2|Bacteria,1MV3C@1224|Proteobacteria,2TSGT@28211|Alphaproteobacteria,3JS3D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-III	rocD	GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363	2.6.1.11,2.6.1.13,2.6.1.17	ko:K00819,ko:K00821	ko00220,ko00300,ko00330,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map00330,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00028,M00845	R00667,R02283,R04475	RC00006,RC00062	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
SX3_k127_1725708_2	1297865.APJD01000005_gene3507	3.072e-251	775.0	COG1304@1|root,COG1304@2|Bacteria,1MUEZ@1224|Proteobacteria,2TQNW@28211|Alphaproteobacteria,3JTJY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FMN-dependent dehydrogenase	lldD1	GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010204,GO:0016999,GO:0017000,GO:0017144,GO:0023052,GO:0031347,GO:0031349,GO:0042579,GO:0042742,GO:0042743,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0050665,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0072593,GO:0080134,GO:0098542,GO:1903409	1.1.2.3	ko:K00101	ko00620,ko01100,map00620,map01100	-	R00196	RC00044	ko00000,ko00001,ko01000	-	-	-	FMN_dh
SX3_k127_1725708_4	1297865.APJD01000005_gene3506	8.403e-178	556.0	COG1082@1|root,COG1082@2|Bacteria,1Q173@1224|Proteobacteria,2TTFM@28211|Alphaproteobacteria,3JRMB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Xylose isomerase-like TIM barrel	MA20_16875	-	-	-	-	-	-	-	-	-	-	-	AP_endonuc_2
SX3_k127_1758156_5	1297865.APJD01000011_gene6663	1.067e-54	192.0	COG1028@1|root,COG1028@2|Bacteria,1MUBQ@1224|Proteobacteria,2TRPN@28211|Alphaproteobacteria,3JU36@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_18715	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_1758156_4	1297865.APJD01000011_gene6664	3.023e-91	299.0	COG0824@1|root,COG0824@2|Bacteria,1MZPN@1224|Proteobacteria,2UCYR@28211|Alphaproteobacteria,3JY0U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thioesterase-like superfamily	MA20_18720	-	3.1.2.23	ko:K01075	ko00130,ko00362,ko01100,ko01110,ko01120,map00130,map00362,map01100,map01110,map01120	-	R01301	RC00004,RC00174	ko00000,ko00001,ko01000	-	-	-	4HBT,4HBT_2
SX3_k127_1758156_1	1297865.APJD01000011_gene6665	4.59e-246	760.0	COG0683@1|root,COG0683@2|Bacteria,1MXR4@1224|Proteobacteria,2TU0F@28211|Alphaproteobacteria,3JS9I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_18725	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1758156_6	1038867.AXAY01000004_gene2471	0.0007936	44.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,3JYGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
SX3_k127_1758156_3	1297865.APJD01000011_gene6666	2.569e-137	452.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TSA6@28211|Alphaproteobacteria,3JSQY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	MA20_18650	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_1758156_0	1297865.APJD01000011_gene6667	0.0	1135.0	COG0411@1|root,COG4177@1|root,COG0411@2|Bacteria,COG4177@2|Bacteria,1MUTY@1224|Proteobacteria,2TQVU@28211|Alphaproteobacteria,3JRTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family	MA20_18645	-	-	ko:K01995,ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C,BPD_transp_2
SX3_k127_1758156_2	1297865.APJD01000011_gene6668	3.617e-187	586.0	COG0559@1|root,COG0559@2|Bacteria,1MXMC@1224|Proteobacteria,2TRYG@28211|Alphaproteobacteria,3JTK3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_18640	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1758808_14	1297865.APJD01000003_gene6117	2.787e-45	163.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,3JRYC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the ABC transporter superfamily	MA20_22940	-	-	ko:K02032,ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	ABC_tran,oligo_HPY
SX3_k127_1758808_0	1297865.APJD01000003_gene6116	0.0	1296.0	COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,2TRC2@28211|Alphaproteobacteria,3JR6K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Biotin carboxylase C-terminal domain	MA20_22950	-	6.4.1.5	ko:K13777	ko00281,map00281	-	R03494	RC00367,RC00942	ko00000,ko00001,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2
SX3_k127_1758808_2	1297865.APJD01000003_gene6115	0.0	1077.0	COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2TRV6@28211|Alphaproteobacteria,3JS1P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Carboxyl transferase domain	MA20_22955	-	6.4.1.5	ko:K13778	ko00281,map00281	-	R03494	RC00367,RC00942	ko00000,ko00001,ko01000	-	-	-	Carboxyl_trans
SX3_k127_1758808_1	1297865.APJD01000003_gene6114	0.0	1099.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JTDD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_1758808_8	1297865.APJD01000003_gene6113	1.927e-194	607.0	COG3246@1|root,COG3246@2|Bacteria,1MZTP@1224|Proteobacteria,2TQKN@28211|Alphaproteobacteria,3JUXJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	beta-keto acid cleavage enzyme	MA20_22960	-	-	-	-	-	-	-	-	-	-	-	BKACE
SX3_k127_1758808_4	1297865.APJD01000003_gene6112	5.167e-268	827.0	COG0683@1|root,COG0683@2|Bacteria,1R8N8@1224|Proteobacteria,2U3GX@28211|Alphaproteobacteria,3JWFE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1758808_9	1297865.APJD01000003_gene6111	1.044e-181	569.0	COG2207@1|root,COG2207@2|Bacteria,1N70D@1224|Proteobacteria,2U1QA@28211|Alphaproteobacteria,3JRXA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix domain	MA20_22965	-	-	-	-	-	-	-	-	-	-	-	HTH_18
SX3_k127_1758808_11	1297865.APJD01000003_gene6110	2.145e-141	451.0	COG0625@1|root,COG0625@2|Bacteria,1PA0Q@1224|Proteobacteria,2TVIC@28211|Alphaproteobacteria,3JVHC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	MA20_22970	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_1758808_6	1297865.APJD01000003_gene6109	5.874e-259	798.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3JQQB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_22975	-	-	ko:K11731	ko00281,map00281	-	R08089	RC01893	ko00000,ko00001,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_1758808_7	1297865.APJD01000003_gene6108	9.346e-243	753.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3JSPS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_22980	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_1758808_3	1297865.APJD01000003_gene6107	0.0	1066.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JTTG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_22985	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_1758808_5	1297865.APJD01000003_gene6106	2.062e-266	820.0	COG0683@1|root,COG0683@2|Bacteria,1MV1Z@1224|Proteobacteria,2TRTD@28211|Alphaproteobacteria,3JTXH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_1758808_12	1297865.APJD01000003_gene6105	1.747e-138	442.0	COG4089@1|root,COG4089@2|Bacteria,1MV8K@1224|Proteobacteria,2U3GA@28211|Alphaproteobacteria,3JT2V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1614)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1614
SX3_k127_1758808_10	1297865.APJD01000003_gene6104	1.484e-157	498.0	COG1813@1|root,COG1813@2|Bacteria,1MXA5@1224|Proteobacteria,2TU2N@28211|Alphaproteobacteria,3K6M3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
SX3_k127_1758808_13	398525.KB900701_gene1960	6.57e-119	392.0	COG2304@1|root,COG2304@2|Bacteria,1MW8K@1224|Proteobacteria,2TV9Y@28211|Alphaproteobacteria,3JSX0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Vault protein inter-alpha-trypsin domain	-	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	VIT,VWA_3
SX3_k127_1760358_12	1297865.APJD01000001_gene5922	5.317e-22	97.0	COG0460@1|root,COG0460@2|Bacteria,1MUDC@1224|Proteobacteria,2TQWS@28211|Alphaproteobacteria,3JTE6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	homoserine dehydrogenase	hom	GO:0003674,GO:0003824,GO:0004412,GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.3	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	M00017,M00018	R01773,R01775	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	ACT,Homoserine_dh,NAD_binding_3
SX3_k127_1760358_2	1297865.APJD01000001_gene5923	7.703e-268	826.0	COG0436@1|root,COG0436@2|Bacteria,1MWS8@1224|Proteobacteria,2TRE3@28211|Alphaproteobacteria,3JRSM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class I and II	aatC	GO:0003674,GO:0003824,GO:0004021,GO:0006082,GO:0006090,GO:0006520,GO:0006522,GO:0006523,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009078,GO:0009079,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019272,GO:0019752,GO:0030632,GO:0032787,GO:0042851,GO:0042852,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046144,GO:0046145,GO:0046394,GO:0046416,GO:0046436,GO:0046437,GO:0047635,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	-	ko:K14261	-	-	-	-	ko00000,ko01000,ko01007	-	-	-	Aminotran_1_2
SX3_k127_1760358_11	1297865.APJD01000001_gene5924	1.663e-46	170.0	2ADU3@1|root,313JS@2|Bacteria,1N74I@1224|Proteobacteria,2UF9R@28211|Alphaproteobacteria,3K18S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1760358_0	1297865.APJD01000001_gene5925	0.0	1245.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2TR7S@28211|Alphaproteobacteria,3JRU1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus	phbC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1,PhaC_N
SX3_k127_1760358_9	1297865.APJD01000001_gene5926	5.167e-79	265.0	COG3686@1|root,COG3686@2|Bacteria,1RAEH@1224|Proteobacteria,2U5JJ@28211|Alphaproteobacteria,3JY5A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MAPEG family	MA20_30600	-	-	-	-	-	-	-	-	-	-	-	MAPEG
SX3_k127_1760358_7	1297865.APJD01000001_gene5927	4.857e-126	408.0	COG0500@1|root,COG0500@2|Bacteria,1R5D7@1224|Proteobacteria,2UA9F@28211|Alphaproteobacteria,3JY6W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23,Methyltransf_25
SX3_k127_1760358_5	1297865.APJD01000001_gene5928	4.489e-210	653.0	COG0002@1|root,COG0002@2|Bacteria,1MVJ6@1224|Proteobacteria,2TRMT@28211|Alphaproteobacteria,3JRRU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde	argC	-	1.2.1.38	ko:K00145	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R03443	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Semialdhyde_dh
SX3_k127_1760358_4	398525.KB900701_gene4732	3.062e-216	682.0	COG0002@1|root,COG0002@2|Bacteria,1MVJ6@1224|Proteobacteria,2TRMT@28211|Alphaproteobacteria,3JRRU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde	argC	-	1.2.1.38	ko:K00145	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R03443	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Semialdhyde_dh,Semialdhyde_dhC
SX3_k127_1760358_6	1297865.APJD01000001_gene5930	1.398e-140	450.0	COG2808@1|root,COG2808@2|Bacteria,1N1B9@1224|Proteobacteria,2U5JV@28211|Alphaproteobacteria,3JSF2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Putative FMN-binding domain	paiB	-	-	ko:K07734	-	-	-	-	ko00000,ko03000	-	-	-	FMN_bind_2
SX3_k127_1760358_3	1297865.APJD01000001_gene5931	3.336e-217	676.0	COG0491@1|root,COG0491@2|Bacteria,1MY6G@1224|Proteobacteria,2TTBX@28211|Alphaproteobacteria,3JS8K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_1760358_1	1297865.APJD01000001_gene5932	4.338e-300	923.0	COG0457@1|root,COG4249@1|root,COG0457@2|Bacteria,COG4249@2|Bacteria,1MXFD@1224|Proteobacteria,2TRW5@28211|Alphaproteobacteria,3JR0X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,Sel1,TPR_1,TPR_2,TPR_8
SX3_k127_1760358_8	1297865.APJD01000001_gene5933	5.077e-111	359.0	COG0586@1|root,COG0586@2|Bacteria,1R0F3@1224|Proteobacteria,2U088@28211|Alphaproteobacteria,3JR8I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SNARE associated Golgi protein	MA20_30625	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
SX3_k127_1760358_10	1297865.APJD01000001_gene5934	3.257e-68	234.0	COG3278@1|root,COG3278@2|Bacteria,1NA04@1224|Proteobacteria,2UG1T@28211|Alphaproteobacteria,3JZAU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the heme-copper respiratory oxidase family	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1760358_13	1297865.APJD01000001_gene5935	1.04e-21	94.0	COG0187@1|root,COG0187@2|Bacteria,1MVH1@1224|Proteobacteria,2TQZV@28211|Alphaproteobacteria,3JRV8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule	parE	-	-	ko:K02622	-	-	-	-	ko00000,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim
SX3_k127_1763344_1	1297865.APJD01000009_gene2912	5e-324	992.0	COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2TSG6@28211|Alphaproteobacteria,3JRIA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD linked oxidases, C-terminal domain	glcD	-	1.1.3.15	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
SX3_k127_1763344_16	1297865.APJD01000009_gene2913	6.033e-76	261.0	COG3474@1|root,COG3474@2|Bacteria,1MZGS@1224|Proteobacteria,2UCUT@28211|Alphaproteobacteria,3JY3A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	cycA	GO:0005575,GO:0005623,GO:0042597,GO:0044464	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
SX3_k127_1763344_0	1297865.APJD01000009_gene2914	0.0	1168.0	COG0028@1|root,COG0028@2|Bacteria,1MWKP@1224|Proteobacteria,2TQK6@28211|Alphaproteobacteria,3JTPN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, central domain	poxB	-	1.2.3.3,1.2.5.1	ko:K00156,ko:K00158	ko00620,ko01100,map00620,map01100	-	R00207,R03145	RC00860,RC02745	ko00000,ko00001,ko01000	-	-	-	Rieske,TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_1763344_8	1297865.APJD01000009_gene2915	2.041e-198	627.0	COG2267@1|root,COG2267@2|Bacteria,1MW9H@1224|Proteobacteria,2U1YC@28211|Alphaproteobacteria,3JUEG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_1763344_18	1297865.APJD01000009_gene2916	1.651e-55	198.0	2DMHT@1|root,32RN3@2|Bacteria,1N0KK@1224|Proteobacteria,2UCFK@28211|Alphaproteobacteria,3JZ5E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_36130	-	-	-	-	-	-	-	-	-	-	-	PEGA
SX3_k127_1763344_19	1297865.APJD01000009_gene2917	2.368e-28	117.0	2AE82@1|root,31422@2|Bacteria,1N8YS@1224|Proteobacteria,2UF9C@28211|Alphaproteobacteria,3K0YY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_05970	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1763344_13	1297865.APJD01000009_gene2918	3.14e-136	436.0	COG0457@1|root,COG0457@2|Bacteria,1N0DE@1224|Proteobacteria,2UCGA@28211|Alphaproteobacteria,3JTSW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	MA20_05980	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_2,TPR_6,TPR_8
SX3_k127_1763344_20	504832.OCAR_5080	1.081e-18	85.0	COG0257@1|root,COG0257@2|Bacteria,1NGBJ@1224|Proteobacteria,2UJAG@28211|Alphaproteobacteria,3K1QP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL36 family	rpmJ	-	-	ko:K02919	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L36
SX3_k127_1763344_7	1297865.APJD01000009_gene2920	1.225e-199	625.0	COG2159@1|root,COG2159@2|Bacteria,1MUUR@1224|Proteobacteria,2TSQB@28211|Alphaproteobacteria,3JVK7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	MA20_05990	-	-	ko:K07045	-	-	-	-	ko00000	-	-	-	Amidohydro_2
SX3_k127_1763344_10	1297865.APJD01000009_gene2921	8.988e-158	499.0	COG1011@1|root,COG1011@2|Bacteria,1MVWN@1224|Proteobacteria,2TS5K@28211|Alphaproteobacteria,3JQRH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	MA20_05995	-	3.8.1.2	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05287	RC00697	ko00000,ko00001,ko01000	-	-	-	HAD_2,Hydrolase
SX3_k127_1763344_15	1297865.APJD01000009_gene2922	2.306e-90	306.0	COG2606@1|root,COG2606@2|Bacteria,1RD82@1224|Proteobacteria,2U7H0@28211|Alphaproteobacteria,3JQV7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aminoacyl-tRNA editing domain	MA20_06000	-	-	-	-	-	-	-	-	-	-	-	tRNA_edit
SX3_k127_1763344_17	1297865.APJD01000009_gene2923	3.367e-69	241.0	2EHBN@1|root,30YYN@2|Bacteria,1RJ5D@1224|Proteobacteria,2UAPP@28211|Alphaproteobacteria,3JZC6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1763344_9	1297865.APJD01000009_gene2924	2.214e-190	595.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2TRIG@28211|Alphaproteobacteria,3JT9F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR family	MA20_06030	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1763344_12	1297865.APJD01000009_gene2925	1.029e-147	471.0	COG1028@1|root,COG1028@2|Bacteria,1N4J7@1224|Proteobacteria,2TSDX@28211|Alphaproteobacteria,3JTR8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_1763344_11	1297865.APJD01000009_gene2926	7.474e-150	482.0	COG1741@1|root,COG1741@2|Bacteria,1MVSW@1224|Proteobacteria,2TSR6@28211|Alphaproteobacteria,3JQM8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the pirin family	MA20_06040	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin
SX3_k127_1763344_14	1297865.APJD01000009_gene2927	1.354e-122	395.0	COG0655@1|root,COG0655@2|Bacteria,1MW7N@1224|Proteobacteria,2TR4Z@28211|Alphaproteobacteria,3JRQZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the WrbA family	wrbA	GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114	1.6.5.2	ko:K03809	ko00130,ko01110,map00130,map01110	-	R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000	-	-	-	FMN_red
SX3_k127_1763344_3	1297865.APJD01000009_gene2928	5.183e-240	744.0	COG5653@1|root,COG5653@2|Bacteria,1MWS9@1224|Proteobacteria,2TT7E@28211|Alphaproteobacteria,3JSXP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_6
SX3_k127_1763344_6	1297865.APJD01000009_gene2929	1.524e-211	662.0	COG2850@1|root,COG2850@2|Bacteria,1R3U2@1224|Proteobacteria,2U3SX@28211|Alphaproteobacteria,3JX8J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	peptidyl-arginine hydroxylation	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_8
SX3_k127_1763344_5	1297865.APJD01000009_gene2930	1.913e-225	700.0	COG0438@1|root,COG0438@2|Bacteria,1R535@1224|Proteobacteria,2U0WF@28211|Alphaproteobacteria,3JXDJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	transferase activity, transferring glycosyl groups	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glycos_transf_1
SX3_k127_1763344_2	1297865.APJD01000009_gene2931	1.029e-274	853.0	COG3307@1|root,COG3307@2|Bacteria,1R5EX@1224|Proteobacteria,2TTQF@28211|Alphaproteobacteria,3JTQN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	O-Antigen ligase	-	-	-	-	-	-	-	-	-	-	-	-	Wzy_C
SX3_k127_1763344_4	1297865.APJD01000009_gene2932	1.263e-228	708.0	COG1216@1|root,COG1216@2|Bacteria,1R59U@1224|Proteobacteria,2TV7K@28211|Alphaproteobacteria,3JQXD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyltransferase like family 2	MA20_06075	-	-	-	-	-	-	-	-	-	-	-	Glyco_tranf_2_3,Glycos_transf_2
SX3_k127_1785442_3	1297865.APJD01000023_gene1169	3.099e-178	559.0	COG2267@1|root,COG2267@2|Bacteria,1MZG8@1224|Proteobacteria,2TUWZ@28211|Alphaproteobacteria,3JUFG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	3.4.11.5	ko:K01259	ko00330,map00330	-	R00135	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_1785442_0	1297865.APJD01000023_gene1170	0.0	1623.0	COG0243@1|root,COG0243@2|Bacteria,1NR6J@1224|Proteobacteria,2TSAP@28211|Alphaproteobacteria,3JUM4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family	MA20_34055	-	-	ko:K08351	ko00780,ko01100,map00780,map01100	-	R10127	RC03056	ko00000,ko00001,ko01000,ko02000	5.A.3.4	-	-	Molybdopterin,Molydop_binding
SX3_k127_1785442_1	1297865.APJD01000023_gene1171	9.321e-303	932.0	COG5492@1|root,COG5492@2|Bacteria,1R30C@1224|Proteobacteria	1224|Proteobacteria	N	domain, Protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1785442_5	1297865.APJD01000023_gene1172	4.473e-112	362.0	2DYNP@1|root,34AG8@2|Bacteria	2|Bacteria	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	VPEP
SX3_k127_1785442_4	1297865.APJD01000023_gene1173	1.127e-165	523.0	COG1209@1|root,COG1209@2|Bacteria,1MU0X@1224|Proteobacteria,2TQPI@28211|Alphaproteobacteria,3JTWF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis	rfbA	-	2.7.7.24	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	M00793	R02328	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
SX3_k127_1785442_2	1297865.APJD01000023_gene1174	3.286e-241	745.0	COG1088@1|root,COG1088@2|Bacteria,1MU5E@1224|Proteobacteria,2TT5T@28211|Alphaproteobacteria,3JRQ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily	rfbB	-	4.2.1.46	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	M00793	R06513	RC00402	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
SX3_k127_1785442_6	1297865.APJD01000023_gene1175	8.473e-108	351.0	28WRV@1|root,2ZIRK@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1795657_2	1297865.APJD01000028_gene5203	8.639e-178	559.0	COG2050@1|root,COG2050@2|Bacteria,1R5RX@1224|Proteobacteria,2U1DZ@28211|Alphaproteobacteria,3JVKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase-like superfamily	MA20_24410	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
SX3_k127_1795657_0	1230476.C207_02238	1.088e-240	758.0	COG1600@1|root,COG1600@2|Bacteria,1MV1H@1224|Proteobacteria,2TR5E@28211|Alphaproteobacteria,3JSKT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)	queG	GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	1.17.99.6	ko:K18979	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DUF1730,Fer4_16,HEAT_2
SX3_k127_1795657_3	1297865.APJD01000028_gene5206	4.049e-164	521.0	COG1968@1|root,COG1968@2|Bacteria,1MX02@1224|Proteobacteria,2TSUR@28211|Alphaproteobacteria,3JTTD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin	uppP	-	3.6.1.27	ko:K06153	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	BacA
SX3_k127_1795657_1	1297865.APJD01000028_gene5207	8.979e-198	618.0	COG0702@1|root,COG0702@2|Bacteria,1MW54@1224|Proteobacteria,2TQMD@28211|Alphaproteobacteria,3JRP1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	NmrA-like family	MA20_24380	-	1.6.5.3,1.6.99.3	ko:K00329,ko:K00356	ko00190,map00190	-	R11945	RC00061	ko00000,ko00001,ko01000	-	-	-	3Beta_HSD,Epimerase,NAD_binding_10,RmlD_sub_bind
SX3_k127_1828972_9	1297865.APJD01000005_gene3976	1.533e-230	714.0	COG4548@1|root,COG4548@2|Bacteria,1MVBZ@1224|Proteobacteria,2TU4K@28211|Alphaproteobacteria,3JQR3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	von Willebrand factor, type A	-	-	-	-	-	-	-	-	-	-	-	-	VWA,VWA_2
SX3_k127_1828972_16	1297865.APJD01000005_gene3977	3.274e-135	433.0	COG4773@1|root,COG4773@2|Bacteria,1N09E@1224|Proteobacteria,2UDKC@28211|Alphaproteobacteria,3K0MJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Secretin and TonB N terminus short domain	-	-	-	-	-	-	-	-	-	-	-	-	TonB_2
SX3_k127_1828972_17	1297865.APJD01000005_gene3978	6.295e-96	316.0	COG1595@1|root,COG1595@2|Bacteria,1RHYH@1224|Proteobacteria,2UA7M@28211|Alphaproteobacteria,3JZHQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_1828972_10	1297865.APJD01000005_gene3979	4.045e-207	647.0	COG3712@1|root,COG3712@2|Bacteria,1PXE6@1224|Proteobacteria,2TTZ0@28211|Alphaproteobacteria,3JXFV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	PT	Domain of unknown function (DUF4880)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4880,FecR
SX3_k127_1828972_0	1297865.APJD01000005_gene3980	0.0	7663.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,3JS9Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	haemagglutination activity domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF3739,Glug,Haemagg_act
SX3_k127_1828972_3	1297865.APJD01000005_gene3981	0.0	1105.0	COG0747@1|root,COG0747@2|Bacteria,1MWBH@1224|Proteobacteria,2TTF4@28211|Alphaproteobacteria,3JW5C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_1828972_7	1297865.APJD01000005_gene3982	2.135e-275	847.0	COG1680@1|root,COG1680@2|Bacteria,1P3SQ@1224|Proteobacteria,2U0E0@28211|Alphaproteobacteria,3JS2D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_1828972_15	1297865.APJD01000005_gene3983	4.858e-144	456.0	COG2197@1|root,COG2197@2|Bacteria,1PFF2@1224|Proteobacteria,2U10X@28211|Alphaproteobacteria,3JUPT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
SX3_k127_1828972_4	1297865.APJD01000005_gene3984	0.0	1051.0	COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2TQWP@28211|Alphaproteobacteria,3JS58@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Gamma-glutamyltranspeptidase	-	-	2.3.2.2,3.4.19.13	ko:K00681	ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100	-	R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935	RC00064,RC00090,RC00096	ko00000,ko00001,ko01000,ko01002	-	-	-	G_glu_transpept
SX3_k127_1828972_2	1297865.APJD01000005_gene3985	0.0	1131.0	COG1574@1|root,COG1574@2|Bacteria,1MWP2@1224|Proteobacteria,2TTRU@28211|Alphaproteobacteria,3JV01@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_3
SX3_k127_1828972_8	1297865.APJD01000005_gene3986	1.575e-233	724.0	COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TS4B@28211|Alphaproteobacteria,3JW7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobalamin synthesis protein cobW C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	CobW_C,cobW
SX3_k127_1828972_5	1297865.APJD01000005_gene3987	9.225e-297	910.0	COG0683@1|root,COG0683@2|Bacteria,1N0MT@1224|Proteobacteria,2TUMI@28211|Alphaproteobacteria,3JS0N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_1828972_13	1297865.APJD01000005_gene3988	1.715e-166	526.0	COG0411@1|root,COG0411@2|Bacteria,1MUFT@1224|Proteobacteria,2U22X@28211|Alphaproteobacteria,3JS0B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_1828972_18	1218076.BAYB01000002_gene500	2.875e-75	259.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2W8Y0@28216|Betaproteobacteria,1K85C@119060|Burkholderiaceae	28216|Betaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
SX3_k127_1828972_12	1297865.APJD01000005_gene3990	8.089e-171	538.0	COG0559@1|root,COG0559@2|Bacteria,1P3FU@1224|Proteobacteria,2U0D7@28211|Alphaproteobacteria,3JXW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1828972_11	1297865.APJD01000005_gene3991	1.145e-200	632.0	COG4177@1|root,COG4177@2|Bacteria,1NY9G@1224|Proteobacteria,2TTSN@28211|Alphaproteobacteria,3JT7P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_1828972_1	1297865.APJD01000005_gene3992	0.0	1365.0	COG3733@1|root,COG3733@2|Bacteria,1MW7W@1224|Proteobacteria,2TUWM@28211|Alphaproteobacteria,3JTB2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Copper amine oxidase, N3 domain	tynA	-	1.4.3.21	ko:K00276	ko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110	-	R02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740	RC00062,RC00189,RC00676,RC01052	ko00000,ko00001,ko01000	-	-	-	Cu_amine_oxid,Cu_amine_oxidN2,Cu_amine_oxidN3
SX3_k127_1828972_19	172088.AUGA01000014_gene2982	1.553e-36	145.0	2ADJ3@1|root,3139F@2|Bacteria,1N61Z@1224|Proteobacteria,2UCT6@28211|Alphaproteobacteria,3K0QT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1828972_6	1297865.APJD01000005_gene3994	1.69e-294	905.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,3JQS8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	2.6.1.55	ko:K15372	ko00410,ko00430,ko01100,map00410,map00430,map01100	-	R00908,R01684	RC00006,RC00062	ko00000,ko00001,ko01000	-	-	-	Aminotran_3
SX3_k127_1828972_14	1297865.APJD01000005_gene3995	1.218e-152	482.0	COG1011@1|root,COG1011@2|Bacteria,1N73G@1224|Proteobacteria,2TVJH@28211|Alphaproteobacteria,3JT4G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	-	-	-	ko:K07025	-	-	-	-	ko00000	-	-	-	HAD_2
SX3_k127_1836979_5	762376.AXYL_05849	3.903e-82	281.0	2DBS9@1|root,2ZAQQ@2|Bacteria,1NMZK@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF3800)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3800
SX3_k127_1836979_1	1297865.APJD01000031_gene1574	1.011e-160	510.0	2E1E3@1|root,32WT7@2|Bacteria,1N2IA@1224|Proteobacteria,2UEYY@28211|Alphaproteobacteria,3K53D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
SX3_k127_1836979_4	1297865.APJD01000031_gene1573	1.127e-89	297.0	COG3193@1|root,COG3193@2|Bacteria,1REF5@1224|Proteobacteria,2U5M2@28211|Alphaproteobacteria,3JYZK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haem-degrading	-	-	-	-	-	-	-	-	-	-	-	-	Haem_degrading
SX3_k127_1836979_0	388399.SSE37_01460	2.142e-170	552.0	COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,2TQYA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine	-	-	2.3.1.31	ko:K00641	ko00270,ko01100,ko01130,map00270,map01100,map01130	-	R01776	RC00004,RC00041	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
SX3_k127_1836979_2	1297865.APJD01000003_gene6050	9.758e-152	483.0	COG1116@1|root,COG1116@2|Bacteria,1MUIM@1224|Proteobacteria,2TRHM@28211|Alphaproteobacteria,3JUE4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_1836979_3	1297865.APJD01000003_gene6051	2.334e-148	473.0	COG0600@1|root,COG0600@2|Bacteria,1N0FV@1224|Proteobacteria,2U1I5@28211|Alphaproteobacteria,3K6GK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_1865908_1	1297865.APJD01000007_gene2338	1.784e-157	497.0	COG3920@1|root,COG3920@2|Bacteria,1NU8D@1224|Proteobacteria,2U0N4@28211|Alphaproteobacteria,3JQZW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HWE histidine kinase	-	-	2.1.1.80,3.1.1.61	ko:K13924	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko01000,ko02022,ko02035	-	-	-	HWE_HK,PAS_9,dCache_1
SX3_k127_1865908_0	1297865.APJD01000007_gene2337	7.622e-265	818.0	COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,2TRET@28211|Alphaproteobacteria,3JTMT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family	-	-	-	ko:K03309,ko:K11103	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.23,2.A.23.1.3,2.A.23.1.6,2.A.23.1.7	-	-	SDF
SX3_k127_1865908_2	1297865.APJD01000007_gene2336	1.017e-44	166.0	29CCX@1|root,2ZZBD@2|Bacteria,1MZTJ@1224|Proteobacteria,2UCRB@28211|Alphaproteobacteria,3K0C0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1865908_3	1245469.S58_51520	1.444e-15	77.0	COG1396@1|root,COG1396@2|Bacteria,1RDBW@1224|Proteobacteria,2U7CY@28211|Alphaproteobacteria,3JY0P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cro/C1-type HTH DNA-binding domain	QU41_21520	-	-	-	-	-	-	-	-	-	-	-	HTH_3
SX3_k127_1868242_13	1297865.APJD01000009_gene2972	6.524e-66	227.0	COG1414@1|root,COG1414@2|Bacteria,1NCG5@1224|Proteobacteria,2U1VD@28211|Alphaproteobacteria,3JVJH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix isocitrate lyase regulation	-	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR,IclR
SX3_k127_1868242_5	1297865.APJD01000009_gene2973	8.572e-267	822.0	COG0477@1|root,COG2814@2|Bacteria,1QTW0@1224|Proteobacteria,2TW8Y@28211|Alphaproteobacteria,3K6S4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_1868242_2	1297865.APJD01000009_gene2974	8.274e-311	953.0	COG0624@1|root,COG0624@2|Bacteria,1MW20@1224|Proteobacteria,2TTGM@28211|Alphaproteobacteria,3JT2B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M20/M25/M40	MA20_06185	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_1868242_4	1297865.APJD01000009_gene2975	1.666e-302	929.0	COG2141@1|root,COG2141@2|Bacteria,1MUJ9@1224|Proteobacteria,2TQKS@28211|Alphaproteobacteria,3JTAR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_06190	-	1.14.14.5	ko:K04091	ko00920,map00920	-	R07210,R10206	RC01779,RC02556	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
SX3_k127_1868242_0	1297865.APJD01000009_gene2976	0.0	1104.0	COG0028@1|root,COG0028@2|Bacteria,1MX6Q@1224|Proteobacteria,2TS3K@28211|Alphaproteobacteria,3JUFH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Belongs to the TPP enzyme family	MA20_06195	-	4.1.1.7	ko:K01576	ko00627,ko01120,map00627,map01120	-	R01764,R02672	RC00595	ko00000,ko00001,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_1868242_14	1297865.APJD01000009_gene2977	8.999e-54	191.0	29CMP@1|root,32HQ9@2|Bacteria,1P2XZ@1224|Proteobacteria,2UU3U@28211|Alphaproteobacteria,3K4MA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1868242_10	1297865.APJD01000009_gene2978	1.203e-117	378.0	COG3791@1|root,COG3791@2|Bacteria,1PRCW@1224|Proteobacteria,2U4AZ@28211|Alphaproteobacteria,3JXGC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	MA20_06205	-	-	-	-	-	-	-	-	-	-	-	GFA
SX3_k127_1868242_6	1297865.APJD01000009_gene2979	5.687e-246	764.0	COG1902@1|root,COG1902@2|Bacteria,1MVIX@1224|Proteobacteria,2TT2F@28211|Alphaproteobacteria,3JU0K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	MA20_06210	-	-	ko:K10680	ko00633,ko01120,map00633,map01120	-	R08014,R08017,R08042	RC00250	ko00000,ko00001,ko01000	-	-	-	Oxidored_FMN
SX3_k127_1868242_12	1297865.APJD01000009_gene2980	1.131e-73	249.0	COG2005@1|root,COG2005@2|Bacteria,1P9SX@1224|Proteobacteria,2UC9Q@28211|Alphaproteobacteria,3JYDZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial regulatory helix-turn-helix protein, lysR family	modE	-	-	ko:K02019	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1
SX3_k127_1868242_1	1297865.APJD01000009_gene2981	0.0	1006.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JS1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	MA20_06215	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_1868242_17	1101190.ARWB01000001_gene2643	0.0008199	48.0	COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TS4B@28211|Alphaproteobacteria,36XEC@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Cobalamin synthesis protein cobW C-terminal domain	p47K	-	-	-	-	-	-	-	-	-	-	-	CobW_C,cobW
SX3_k127_1868242_8	1230476.C207_04294	1.733e-175	552.0	COG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,2TWIJ@28211|Alphaproteobacteria,3JU0W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_1868242_11	1297865.APJD01000009_gene2983	3.414e-75	259.0	2ECDR@1|root,336BZ@2|Bacteria,1RETI@1224|Proteobacteria,2U6SD@28211|Alphaproteobacteria,3JZ2N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1868242_3	1297865.APJD01000009_gene2984	2.555e-306	939.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JVNS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldedh
SX3_k127_1868242_9	1297865.APJD01000009_gene2985	3.256e-121	389.0	COG1618@1|root,COG1618@2|Bacteria,1RHUK@1224|Proteobacteria,2U9YB@28211|Alphaproteobacteria,3JYCD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Protein of unknown function (DUF2478)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2478
SX3_k127_1868242_16	172088.AUGA01000001_gene6300	3.188e-05	47.0	2EHAM@1|root,33B2H@2|Bacteria,1RAIW@1224|Proteobacteria,2U5TZ@28211|Alphaproteobacteria,3JY03@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1868242_15	1230476.C207_04295	1.139e-36	139.0	297CE@1|root,2ZUJZ@2|Bacteria,1N70S@1224|Proteobacteria,2UHEE@28211|Alphaproteobacteria,3K0J5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_06225	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1868242_7	1297865.APJD01000009_gene2987	5.544e-189	590.0	COG0778@1|root,COG0778@2|Bacteria,1NTK9@1224|Proteobacteria,2TR3E@28211|Alphaproteobacteria,3JV2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1881897_7	395019.Bmul_5680	6.123e-08	56.0	COG3439@1|root,COG3439@2|Bacteria,1RH9Z@1224|Proteobacteria,2VTC8@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Domain of unknown function DUF302	-	-	-	-	-	-	-	-	-	-	-	-	DUF302
SX3_k127_1881897_6	78245.Xaut_2893	2.442e-27	119.0	COG0730@1|root,COG0730@2|Bacteria,1MVBS@1224|Proteobacteria,2TQW0@28211|Alphaproteobacteria,3EZCD@335928|Xanthobacteraceae	28211|Alphaproteobacteria	S	membrane transporter protein	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_1881897_5	224911.27351345	1.413e-49	180.0	COG0640@1|root,COG0640@2|Bacteria,1MZAU@1224|Proteobacteria,2U9NV@28211|Alphaproteobacteria,3JZQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	ko:K03892	-	-	-	-	ko00000,ko03000	-	-	-	HTH_20
SX3_k127_1881897_3	504832.OCAR_7747	8.191e-100	329.0	COG0394@1|root,COG0394@2|Bacteria,1MWYQ@1224|Proteobacteria,2TU1U@28211|Alphaproteobacteria,3JT8H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Low molecular weight phosphotyrosine protein phosphatase	arsC1	-	1.20.4.1	ko:K03741	-	-	-	-	ko00000,ko01000	-	-	-	LMWPc
SX3_k127_1881897_1	504832.OCAR_7748	1.46e-197	619.0	COG0798@1|root,COG0798@2|Bacteria,1MUXY@1224|Proteobacteria,2TSVJ@28211|Alphaproteobacteria,3JSKB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sodium Bile acid symporter family	arsB	-	-	ko:K03325	-	-	-	-	ko00000,ko02000	2.A.59	-	-	SBF
SX3_k127_1881897_4	319003.Bra1253DRAFT_07811	1.648e-62	216.0	COG1393@1|root,COG1393@2|Bacteria,1MZ4Z@1224|Proteobacteria,2U70U@28211|Alphaproteobacteria,3JYT0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ArsC family	arsC	-	1.20.4.1	ko:K00537	-	-	-	-	ko00000,ko01000	-	-	-	ArsC
SX3_k127_1881897_2	323097.Nham_4428	3.22e-145	461.0	COG0431@1|root,COG0431@2|Bacteria,1MVEB@1224|Proteobacteria,2TR9S@28211|Alphaproteobacteria,3JUS5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NADPH-dependent FMN reductase	arsH	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010181,GO:0016043,GO:0016491,GO:0016645,GO:0016646,GO:0022607,GO:0032553,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0048037,GO:0050662,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0052873,GO:0055114,GO:0065003,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363	-	ko:K11811	-	-	-	-	ko00000	-	-	-	FMN_red
SX3_k127_1881897_0	504832.OCAR_7751	1.611e-228	711.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TU0K@28211|Alphaproteobacteria,3JWEP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family	merA	-	1.16.1.1	ko:K00520	-	-	-	-	ko00000,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_dim
SX3_k127_1884205_6	1297865.APJD01000023_gene1061	2.343e-112	363.0	COG0028@1|root,COG0028@2|Bacteria,1MX6Q@1224|Proteobacteria,2TS3K@28211|Alphaproteobacteria,3JTQX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Belongs to the TPP enzyme family	MA20_04525	-	4.1.1.7	ko:K01576	ko00627,ko01120,map00627,map01120	-	R01764,R02672	RC00595	ko00000,ko00001,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_1884205_9	1297865.APJD01000023_gene1060	3.163e-77	262.0	COG1942@1|root,COG1942@2|Bacteria,1RHA5@1224|Proteobacteria,2U5U5@28211|Alphaproteobacteria,3K5T6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tautomerase enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Tautomerase_2
SX3_k127_1884205_7	1297865.APJD01000023_gene1059	4.6e-98	327.0	COG1733@1|root,COG1733@2|Bacteria,1RA78@1224|Proteobacteria,2U6TK@28211|Alphaproteobacteria,3JYNW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_1884205_4	1297865.APJD01000023_gene1058	1.202e-126	417.0	COG0346@1|root,COG0346@2|Bacteria,1MV4D@1224|Proteobacteria,2U0JF@28211|Alphaproteobacteria,3JVP2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	glyoxalase bleomycin resistance protein dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_1884205_10	1297865.APJD01000023_gene1057	5.986e-53	189.0	COG1359@1|root,COG1359@2|Bacteria,1NGPW@1224|Proteobacteria,2U9DJ@28211|Alphaproteobacteria,3JZJY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_1884205_2	1297865.APJD01000023_gene1056	9.28e-226	706.0	COG0079@1|root,COG0079@2|Bacteria,1MW7I@1224|Proteobacteria,2TT3X@28211|Alphaproteobacteria,3JS7G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily	hisC	-	2.6.1.9	ko:K00817	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	M00026	R00694,R00734,R03243	RC00006,RC00888	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
SX3_k127_1884205_11	1297865.APJD01000023_gene1055	9.972e-51	180.0	COG5591@1|root,COG5591@2|Bacteria,1N9QU@1224|Proteobacteria,2UHZK@28211|Alphaproteobacteria,3K27N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase propeptide and YPEB domain	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_2
SX3_k127_1884205_8	1297865.APJD01000023_gene1054	9.423e-78	261.0	2BZQA@1|root,32WE5@2|Bacteria,1N533@1224|Proteobacteria,2UD0J@28211|Alphaproteobacteria,3K0KR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of Unknown Function (DUF930)	-	-	-	-	-	-	-	-	-	-	-	-	DUF930
SX3_k127_1884205_3	1297865.APJD01000023_gene1053	8.806e-192	598.0	COG3777@1|root,COG3777@2|Bacteria,1P96N@1224|Proteobacteria,2TV0U@28211|Alphaproteobacteria,3JQXP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	N-terminal half of MaoC dehydratase	MA20_04520	-	4.2.1.153	ko:K09709	ko00720,ko01120,ko01200,map00720,map01120,map01200	M00376	R09282	RC02479	ko00000,ko00001,ko00002,ko01000	-	-	-	MaoC_dehydrat_N,MaoC_dehydratas
SX3_k127_1884205_1	1297865.APJD01000023_gene1052	6.473e-232	732.0	COG1804@1|root,COG1804@2|Bacteria,1MU4A@1224|Proteobacteria,2TRSB@28211|Alphaproteobacteria,3JR7A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_04515	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_1884205_0	1297865.APJD01000023_gene1051	4.57e-256	791.0	COG1960@1|root,COG1960@2|Bacteria,1MVAH@1224|Proteobacteria,2TR02@28211|Alphaproteobacteria,3JR31@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_04510	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_1884205_5	1297865.APJD01000023_gene1050	3.413e-124	398.0	COG0583@1|root,COG0583@2|Bacteria,1MXR1@1224|Proteobacteria,2TRA1@28211|Alphaproteobacteria,3JSTX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR family	MA20_04505	-	-	ko:K19338	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_1886615_2	1297865.APJD01000028_gene5163	1.777e-223	694.0	COG1420@1|root,COG1420@2|Bacteria,1MVX4@1224|Proteobacteria,2TRUF@28211|Alphaproteobacteria,3JS5A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons	hrcA	-	-	ko:K03705	-	-	-	-	ko00000,ko03000	-	-	-	HrcA,HrcA_DNA-bdg
SX3_k127_1886615_6	172088.AUGA01000016_gene2530	1.465e-146	471.0	COG0689@1|root,COG0689@2|Bacteria,1MVFZ@1224|Proteobacteria,2TRMC@28211|Alphaproteobacteria,3JRP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates	rph	GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575	2.7.7.56	ko:K00989	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	RNase_PH,RNase_PH_C
SX3_k127_1886615_7	1297865.APJD01000028_gene5161	6.532e-136	432.0	COG0127@1|root,COG0127@2|Bacteria,1MUK5@1224|Proteobacteria,2TV4B@28211|Alphaproteobacteria,3JTQ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions	rdgB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576	3.6.1.66	ko:K02428	ko00230,map00230	-	R00426,R00720,R01855,R02100,R02720,R03531	RC00002	ko00000,ko00001,ko01000	-	-	-	Ham1p_like
SX3_k127_1886615_0	1297865.APJD01000028_gene5160	2.854e-247	764.0	COG0635@1|root,COG0635@2|Bacteria,1MU76@1224|Proteobacteria,2TT63@28211|Alphaproteobacteria,3JTNX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Involved in the biosynthesis of porphyrin-containing compound	hemN	-	-	-	-	-	-	-	-	-	-	-	HemN_C,Radical_SAM
SX3_k127_1886615_1	1297865.APJD01000028_gene5159	2.001e-231	721.0	COG0683@1|root,COG0683@2|Bacteria,1QURG@1224|Proteobacteria,2TS62@28211|Alphaproteobacteria,3JR0B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	LppC putative lipoprotein	MA20_24635	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_1886615_5	1297865.APJD01000028_gene5158	6.848e-200	623.0	COG0313@1|root,COG0313@2|Bacteria,1MU0E@1224|Proteobacteria,2TR14@28211|Alphaproteobacteria,3JTNR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA	rsmI	-	2.1.1.198	ko:K07056	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	TP_methylase
SX3_k127_1886615_8	172088.AUGA01000016_gene2525	4.493e-67	232.0	COG0792@1|root,COG0792@2|Bacteria,1N6VN@1224|Proteobacteria,2UFTM@28211|Alphaproteobacteria,3JZ0S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the UPF0102 family	MA20_24645	-	-	ko:K07460	-	-	-	-	ko00000	-	-	-	UPF0102
SX3_k127_1886615_4	1297865.APJD01000028_gene5156	1.846e-206	642.0	COG0189@1|root,COG0189@2|Bacteria,1MVUA@1224|Proteobacteria,2TQNE@28211|Alphaproteobacteria,3JS1I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the prokaryotic GSH synthase family	gshB	GO:0003674,GO:0003824,GO:0004363,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0019184,GO:0034641,GO:0042398,GO:0043043,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044424,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901564,GO:1901566,GO:1901576	6.3.2.3	ko:K01920	ko00270,ko00480,ko01100,map00270,map00480,map01100	M00118	R00497,R10994	RC00096,RC00141	ko00000,ko00001,ko00002,ko01000	-	-	-	GSH-S_ATP,GSH-S_N
SX3_k127_1886615_3	1297865.APJD01000028_gene5155	8.835e-210	652.0	COG0491@1|root,COG0491@2|Bacteria,1MY6G@1224|Proteobacteria,2TTBX@28211|Alphaproteobacteria,3JTGB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	MA20_30545	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_1887117_4	1297865.APJD01000033_gene7057	3.304e-216	671.0	COG1052@1|root,COG1052@2|Bacteria,1MU2D@1224|Proteobacteria,2TSM8@28211|Alphaproteobacteria,3JQKZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	D-isomer specific 2-hydroxyacid dehydrogenase	gyaR	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	1.1.1.26	ko:K00015	ko00630,ko01100,ko01110,ko01120,map00630,map01100,map01110,map01120	-	R00717,R01388	RC00031,RC00042	ko00000,ko00001,ko01000	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_1887117_7	1297865.APJD01000033_gene7056	1.479e-124	402.0	COG3807@1|root,COG3807@2|Bacteria,1RHM2@1224|Proteobacteria,2UA1R@28211|Alphaproteobacteria,3JT0T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial SH3 domain	MA20_24010	-	6.1.1.12	ko:K01876	ko00970,map00970	M00359,M00360	R05577	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	SH3_4
SX3_k127_1887117_11	1230476.C207_02305	3.13e-99	326.0	COG0735@1|root,COG0735@2|Bacteria,1RH58@1224|Proteobacteria,2U75R@28211|Alphaproteobacteria,3JUEN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the Fur family	irr	-	-	ko:K09826	-	-	-	-	ko00000,ko03000	-	-	-	FUR
SX3_k127_1887117_9	1297865.APJD01000033_gene7054	8.901e-115	369.0	COG0764@1|root,COG0764@2|Bacteria,1MWV8@1224|Proteobacteria,2TV8S@28211|Alphaproteobacteria,3JRCK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl- ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)- decenoyl-ACP. Can catalyze the dehydratase reaction for beta- hydroxyacyl-ACPs with saturated chain lengths up to 16 0, being most active on intermediate chain length	fabA	-	4.2.1.59,5.3.3.14	ko:K01716	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00083	R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07639	RC00831,RC01078,RC01095	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FabA
SX3_k127_1887117_1	1230476.C207_02307	4.151e-263	811.0	COG0304@1|root,COG0304@2|Bacteria,1MU1X@1224|Proteobacteria,2TQYV@28211|Alphaproteobacteria,3JS31@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the beta-ketoacyl-ACP synthases family	fabB	GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.41	ko:K00647	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
SX3_k127_1887117_2	1230476.C207_02308	2.363e-248	772.0	COG3007@1|root,COG3007@2|Bacteria,1MWCQ@1224|Proteobacteria,2U1IY@28211|Alphaproteobacteria,3JX0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP)	fabV	-	-	-	-	-	-	-	-	-	-	-	Eno-Rase_FAD_bd,Eno-Rase_NADH_b,Enoyl_reductase
SX3_k127_1887117_15	224911.27348412	1.01e-07	59.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1887117_8	1297865.APJD01000033_gene7051	4.126e-123	404.0	COG0625@1|root,COG0625@2|Bacteria,1RA05@1224|Proteobacteria,2TS58@28211|Alphaproteobacteria,3JT29@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	MA20_23980	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_1887117_10	1297865.APJD01000033_gene7050	2.199e-103	338.0	COG0454@1|root,COG0456@2|Bacteria,1RAFA@1224|Proteobacteria,2U1HD@28211|Alphaproteobacteria,3JR40@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
SX3_k127_1887117_6	1297865.APJD01000033_gene7049	2.638e-154	488.0	COG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,2TQYJ@28211|Alphaproteobacteria,3JTU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Destroys radicals which are normally produced within the cells and which are toxic to biological systems	sodA	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C,Sod_Fe_N
SX3_k127_1887117_0	1297865.APJD01000033_gene7048	0.0	1415.0	COG1185@1|root,COG1185@2|Bacteria,1MVB9@1224|Proteobacteria,2TRH3@28211|Alphaproteobacteria,3JR39@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction	pnp	GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575	2.7.7.8	ko:K00962	ko00230,ko00240,ko03018,map00230,map00240,map03018	M00394	R00437,R00438,R00439,R00440	RC02795	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019	-	-	-	KH_1,PNPase,RNase_PH,RNase_PH_C,S1
SX3_k127_1887117_14	1230476.C207_02310	2.491e-08	55.0	COG1185@1|root,COG1185@2|Bacteria,1MVB9@1224|Proteobacteria,2TRH3@28211|Alphaproteobacteria,3JR39@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction	pnp	GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575	2.7.7.8	ko:K00962	ko00230,ko00240,ko03018,map00230,map00240,map03018	M00394	R00437,R00438,R00439,R00440	RC02795	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019	-	-	-	KH_1,PNPase,RNase_PH,RNase_PH_C,S1
SX3_k127_1887117_13	398525.KB900701_gene1414	1.652e-48	173.0	COG0184@1|root,COG0184@2|Bacteria,1MZ2W@1224|Proteobacteria,2UBRZ@28211|Alphaproteobacteria,3JZHF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome	rpsO	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02956	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S15
SX3_k127_1887117_3	1297865.APJD01000033_gene7046	3.399e-234	731.0	COG0130@1|root,COG0130@2|Bacteria,1MV0N@1224|Proteobacteria,2TSJK@28211|Alphaproteobacteria,3JRP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs	truB	GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481	5.4.99.25	ko:K03177	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	TruB-C_2,TruB_C_2,TruB_N
SX3_k127_1887117_12	1297865.APJD01000033_gene7045	4.383e-92	304.0	COG0858@1|root,COG0858@2|Bacteria,1MZPE@1224|Proteobacteria,2UCJF@28211|Alphaproteobacteria,3JY9A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA	rbfA	-	-	ko:K02834	-	-	-	-	ko00000,ko03009	-	-	-	RBFA
SX3_k127_1887117_5	1297865.APJD01000033_gene7044	9.834e-178	558.0	COG0532@1|root,COG0532@2|Bacteria,1MV26@1224|Proteobacteria,2TQMY@28211|Alphaproteobacteria,3JRUZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	infB	-	-	ko:K02519	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc
SX3_k127_1902956_5	172088.AUGA01000027_gene87	4.886e-06	48.0	COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2TUNU@28211|Alphaproteobacteria,3JQPC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1902956_2	1297865.APJD01000028_gene5267	5.143e-217	677.0	COG0667@1|root,COG0667@2|Bacteria,1MVEH@1224|Proteobacteria,2TRHS@28211|Alphaproteobacteria,3JVP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldo keto reductase	-	-	1.1.1.65	ko:K05275	ko00750,ko01100,ko01120,map00750,map01100,map01120	-	R01708	RC00116	ko00000,ko00001,ko01000	-	-	-	Aldo_ket_red
SX3_k127_1902956_3	1297865.APJD01000028_gene5266	1.24e-168	531.0	COG0476@1|root,COG0476@2|Bacteria,1MW7H@1224|Proteobacteria,2TRWY@28211|Alphaproteobacteria,3JQSR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	ThiF family	moeB	-	2.7.7.80	ko:K21029	ko04122,map04122	-	R07459	RC00043	ko00000,ko00001,ko01000	-	-	-	ThiF
SX3_k127_1902956_1	1297865.APJD01000028_gene5265	9.494e-278	857.0	COG0265@1|root,COG3409@1|root,COG0265@2|Bacteria,COG3409@2|Bacteria,1MV63@1224|Proteobacteria,2TU13@28211|Alphaproteobacteria,3JUXT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MO	Putative peptidoglycan binding domain	-	-	-	-	-	-	-	-	-	-	-	-	PG_binding_1,SPOR,Trypsin_2
SX3_k127_1902956_0	1297865.APJD01000028_gene5264	0.0	1146.0	COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2TR49@28211|Alphaproteobacteria,3JTD9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Gamma-glutamyltranspeptidase	MA20_24045	-	2.3.2.2,3.4.19.13	ko:K00681	ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100	-	R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935	RC00064,RC00090,RC00096	ko00000,ko00001,ko01000,ko01002	-	-	-	G_glu_transpept
SX3_k127_1902956_4	1297865.APJD01000028_gene5263	1.095e-72	244.0	COG1670@1|root,COG1670@2|Bacteria,1RE40@1224|Proteobacteria,2TSJ6@28211|Alphaproteobacteria,3JUSX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_3
SX3_k127_190500_0	1297865.APJD01000010_gene4944	0.0	1300.0	COG0557@1|root,COG0557@2|Bacteria,1MUS6@1224|Proteobacteria,2TRC1@28211|Alphaproteobacteria,3JRHJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs	rnr	GO:0000175,GO:0003674,GO:0003724,GO:0003824,GO:0004386,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008408,GO:0008997,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016896,GO:0017111,GO:0019222,GO:0019439,GO:0034458,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575	-	ko:K12573	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	RNB,S1
SX3_k127_190500_6	1230476.C207_04177	1.255e-90	304.0	COG5349@1|root,COG5349@2|Bacteria,1MZDD@1224|Proteobacteria,2UCM4@28211|Alphaproteobacteria,3JYRF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF983)	MA20_36345	-	-	-	-	-	-	-	-	-	-	-	DUF983
SX3_k127_190500_3	1297865.APJD01000010_gene4942	1.369e-162	512.0	COG0494@1|root,COG0494@2|Bacteria,1N8EV@1224|Proteobacteria,2TTNV@28211|Alphaproteobacteria,3JUJI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes	MA20_36340	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_190500_10	1304877.KI519399_gene3301	0.0003196	46.0	2A79Y@1|root,30W6M@2|Bacteria,1RD3K@1224|Proteobacteria,2U7AJ@28211|Alphaproteobacteria,3JYYU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_190500_1	1297865.APJD01000010_gene4941	6.705e-296	908.0	COG2141@1|root,COG2141@2|Bacteria,1MUVN@1224|Proteobacteria,2TR26@28211|Alphaproteobacteria,3JQKW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_36320	-	1.14.14.5	ko:K04091	ko00920,map00920	-	R07210,R10206	RC01779,RC02556	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
SX3_k127_190500_7	398525.KB900701_gene5444	7.625e-26	108.0	COG0267@1|root,COG0267@2|Bacteria,1N6QV@1224|Proteobacteria,2UF4D@28211|Alphaproteobacteria,3K0Z0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL33 family	rpmG	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02913	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L33
SX3_k127_190500_4	1297865.APJD01000010_gene4939	6.152e-110	359.0	2BZSP@1|root,331XA@2|Bacteria,1R6PZ@1224|Proteobacteria,2TSEG@28211|Alphaproteobacteria,3JSZ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_190500_8	1297865.APJD01000010_gene4938	6.356e-23	100.0	2AETE@1|root,314QE@2|Bacteria,1NB5S@1224|Proteobacteria,2UFMG@28211|Alphaproteobacteria,3K108@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_190500_2	1297865.APJD01000010_gene4937	2.312e-292	904.0	COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,2TT2J@28211|Alphaproteobacteria,3JQXC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ammonium Transporter	amtB	-	-	ko:K03320	-	-	-	-	ko00000,ko02000	1.A.11	-	-	Ammonium_transp
SX3_k127_190500_5	1297865.APJD01000010_gene4935	1.888e-97	318.0	COG0477@1|root,COG2814@2|Bacteria,1MVHG@1224|Proteobacteria,2TRA4@28211|Alphaproteobacteria,3JSPN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_36250	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1909830_12	1297865.APJD01000023_gene1154	1.252e-96	319.0	COG0438@1|root,COG0438@2|Bacteria,1PEAE@1224|Proteobacteria,2TRDN@28211|Alphaproteobacteria,3JQR5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
SX3_k127_1909830_1	1297865.APJD01000023_gene1153	0.0	1225.0	COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,1R5P9@1224|Proteobacteria,2U0GE@28211|Alphaproteobacteria,3JS2C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	DM	protein involved in exopolysaccharide biosynthesis	-	-	-	ko:K16554	ko05111,map05111	-	-	-	ko00000,ko00001,ko02000	8.A.3.1	-	-	AAA_31,GNVR,Wzz
SX3_k127_1909830_3	1297865.APJD01000023_gene1152	1.716e-268	830.0	COG2244@1|root,COG2244@2|Bacteria,1MXTA@1224|Proteobacteria,2TSNJ@28211|Alphaproteobacteria,3JVHK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polysaccharide biosynthesis C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt,Polysacc_synt_C
SX3_k127_1909830_5	1297865.APJD01000023_gene1151	7.482e-261	808.0	COG0654@1|root,COG0654@2|Bacteria,1MUEW@1224|Proteobacteria,2TUIB@28211|Alphaproteobacteria,3JU6H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
SX3_k127_1909830_7	1297865.APJD01000023_gene1150	4.924e-243	751.0	COG5653@1|root,COG5653@2|Bacteria,1R68D@1224|Proteobacteria,2TSSF@28211|Alphaproteobacteria,3JU2A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_6
SX3_k127_1909830_10	1297865.APJD01000023_gene1149	1.376e-176	561.0	COG1922@1|root,COG1922@2|Bacteria,1N1HD@1224|Proteobacteria,2TSBS@28211|Alphaproteobacteria,3JTQA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the glycosyltransferase 26 family	MA20_06090	-	2.4.1.187	ko:K05946	ko05111,map05111	-	-	-	ko00000,ko00001,ko01000,ko01003	-	GT26	-	Glyco_tran_WecB
SX3_k127_1909830_4	1297865.APJD01000023_gene1148	4.96e-267	823.0	COG0402@1|root,COG0402@2|Bacteria,1MX34@1224|Proteobacteria,2U0IN@28211|Alphaproteobacteria,3JVRN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Amidohydrolase family	-	-	3.5.4.1	ko:K01485	ko00240,ko00330,ko01100,map00240,map00330,map01100	-	R00974,R01411,R02922	RC00074,RC00514,RC00809	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Amidohydro_3,MGS
SX3_k127_1909830_2	1297865.APJD01000023_gene1147	1.187e-270	835.0	COG0477@1|root,COG2814@2|Bacteria,1QTW0@1224|Proteobacteria,2TSC6@28211|Alphaproteobacteria,3JVT2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_1909830_14	1297865.APJD01000023_gene1146	3.655e-37	142.0	2CC28@1|root,34BMI@2|Bacteria,1N71Q@1224|Proteobacteria,2UGXB@28211|Alphaproteobacteria,3K1M0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1909830_11	172088.AUGA01000012_gene7244	1.278e-147	470.0	COG1659@1|root,COG1659@2|Bacteria,1QKHQ@1224|Proteobacteria,2TUWD@28211|Alphaproteobacteria,3JVHM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Encapsulating protein for peroxidase	-	-	-	-	-	-	-	-	-	-	-	-	Linocin_M18
SX3_k127_1909830_8	1297865.APJD01000023_gene1144	5.927e-231	717.0	COG2837@1|root,COG2837@2|Bacteria,1MWDD@1224|Proteobacteria,2TVIX@28211|Alphaproteobacteria,3JTZU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Dyp-type peroxidase family	-	-	-	ko:K07223	-	-	-	-	ko00000	-	-	-	Dyp_perox
SX3_k127_1909830_13	1297865.APJD01000023_gene1143	2.043e-49	177.0	COG3798@1|root,COG3798@2|Bacteria,1N2FJ@1224|Proteobacteria,2UC84@28211|Alphaproteobacteria,3K024@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2171)	MA20_37705	-	-	-	-	-	-	-	-	-	-	-	DUF2171
SX3_k127_1909830_0	172088.AUGA01000012_gene7241	0.0	1637.0	COG0542@1|root,COG0542@2|Bacteria,1MURH@1224|Proteobacteria,2TRKI@28211|Alphaproteobacteria,3JRD0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	clpB	-	-	ko:K03695	ko04213,map04213	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
SX3_k127_1909830_6	1230476.C207_06702	1.053e-244	760.0	COG3115@1|root,COG3115@2|Bacteria,1QR19@1224|Proteobacteria,2U3VA@28211|Alphaproteobacteria,3JV0B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	YXWGXW repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	YXWGXW
SX3_k127_1909830_15	398525.KB900701_gene7150	2.108e-28	118.0	2A1TS@1|root,30Q2Q@2|Bacteria,1N9V0@1224|Proteobacteria,2UFJQ@28211|Alphaproteobacteria,3K0VB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1909830_9	1297865.APJD01000023_gene1140	9.86e-194	606.0	COG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,2TR01@28211|Alphaproteobacteria,3JU9R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	DnaJ C terminal domain	cbpA	-	-	-	-	-	-	-	-	-	-	-	DnaJ,DnaJ_C
SX3_k127_1909830_16	1297865.APJD01000023_gene1139	2.189e-17	83.0	COG0789@1|root,COG0789@2|Bacteria,1N831@1224|Proteobacteria,2UFMB@28211|Alphaproteobacteria,3JZYC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	MerR HTH family regulatory protein	-	-	-	ko:K18997	-	-	-	-	ko00000,ko03036	-	-	-	MerR_2
SX3_k127_1913300_20	196490.AUEZ01000044_gene6938	1.977e-12	67.0	COG1028@1|root,COG1028@2|Bacteria,1MUBQ@1224|Proteobacteria,2TRPN@28211|Alphaproteobacteria,3JU36@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_18715	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_1913300_0	1297865.APJD01000011_gene6662	0.0	1261.0	COG0318@1|root,COG0318@2|Bacteria,1MUQZ@1224|Proteobacteria,2TRV7@28211|Alphaproteobacteria,3JSE9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	MA20_18710	-	6.2.1.34	ko:K12508	-	-	-	-	ko00000,ko01000	-	-	-	AMP-binding
SX3_k127_1913300_6	1297865.APJD01000011_gene6661	2.297e-163	515.0	COG1024@1|root,COG1024@2|Bacteria,1MWYZ@1224|Proteobacteria,2TRNB@28211|Alphaproteobacteria,3JS4Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_18705	-	4.2.1.155	ko:K20036	ko00920,map00920	-	R10936	RC00004,RC03306,RC03307	ko00000,ko00001,ko01000	-	-	-	ECH_1
SX3_k127_1913300_12	1297865.APJD01000011_gene6660	2.332e-95	313.0	2DMP1@1|root,32SS8@2|Bacteria,1N0XZ@1224|Proteobacteria,2UBZ9@28211|Alphaproteobacteria,3JU71@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0311 family	MA20_18690	-	-	-	-	-	-	-	-	-	-	-	DUF3237
SX3_k127_1913300_2	1297865.APJD01000011_gene6659	1.835e-269	842.0	COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2TQNK@28211|Alphaproteobacteria,3JTGN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporter, DctM component	MA20_18685	-	-	-	-	-	-	-	-	-	-	-	DctM
SX3_k127_1913300_10	1297865.APJD01000011_gene6658	5.273e-118	381.0	COG3090@1|root,COG3090@2|Bacteria,1NDFB@1224|Proteobacteria,2U1K8@28211|Alphaproteobacteria,3JT8K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporters, DctQ component	MA20_18680	-	-	-	-	-	-	-	-	-	-	-	DctQ
SX3_k127_1913300_4	1297865.APJD01000011_gene6657	3.581e-229	710.0	COG1638@1|root,COG1638@2|Bacteria,1MVHI@1224|Proteobacteria,2TQVT@28211|Alphaproteobacteria,3JTC3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	MA20_18675	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_1913300_3	1230476.C207_06620	8.106e-250	773.0	COG0654@1|root,COG0654@2|Bacteria,1MV8T@1224|Proteobacteria,2TRB8@28211|Alphaproteobacteria,3JSNQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	pobA	GO:0000166,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016705,GO:0016709,GO:0018659,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363	1.14.13.2	ko:K00481	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R01298	RC00046	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3
SX3_k127_1913300_13	1297865.APJD01000011_gene6655	1.645e-94	311.0	COG2050@1|root,COG2050@2|Bacteria,1RHP8@1224|Proteobacteria,2UA1N@28211|Alphaproteobacteria,3JYAS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase-like superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT,4HBT_3
SX3_k127_1913300_5	1297865.APJD01000011_gene6654	1.852e-185	582.0	COG0583@1|root,COG0583@2|Bacteria,1MUNN@1224|Proteobacteria,2VEUG@28211|Alphaproteobacteria,3JUT2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator, LysR family	MA20_18660	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_1913300_9	1297865.APJD01000011_gene6653	1.682e-136	434.0	COG3576@1|root,COG3576@2|Bacteria,1NBWC@1224|Proteobacteria,2TUCA@28211|Alphaproteobacteria,3JQXA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Pyridoxamine 5'-phosphate oxidase	MA20_18655	-	-	ko:K07006	-	-	-	-	ko00000	-	-	-	Putative_PNPOx
SX3_k127_1913300_7	1297865.APJD01000011_gene6652	7.53e-163	512.0	COG0625@1|root,COG0625@2|Bacteria,1MX33@1224|Proteobacteria,2TV9R@28211|Alphaproteobacteria,3JRRN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Outer mitochondrial membrane transport complex protein	MA20_18730	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_C_6,GST_N_4
SX3_k127_1913300_19	1297865.APJD01000011_gene6651	4.217e-44	161.0	2ACQA@1|root,312AW@2|Bacteria,1N3AT@1224|Proteobacteria,2UEPA@28211|Alphaproteobacteria,3K0PS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1913300_8	1297865.APJD01000011_gene6650	3.562e-148	471.0	COG2378@1|root,COG2378@2|Bacteria,1MXS8@1224|Proteobacteria,2TT5H@28211|Alphaproteobacteria,3JV0Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WYL domain	MA20_18740	-	-	-	-	-	-	-	-	-	-	-	HTH_11,WYL
SX3_k127_1913300_17	1297865.APJD01000011_gene6649	5.388e-71	242.0	COG0727@1|root,COG0727@2|Bacteria,1N37X@1224|Proteobacteria,2U95A@28211|Alphaproteobacteria,3JZEV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative zinc- or iron-chelating domain	-	-	-	ko:K06940	-	-	-	-	ko00000	-	-	-	CxxCxxCC
SX3_k127_1913300_15	1297865.APJD01000011_gene6648	1.286e-80	269.0	2EHCP@1|root,33B4H@2|Bacteria,1RC35@1224|Proteobacteria,2U667@28211|Alphaproteobacteria,3JYHJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_18750	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1913300_14	1297865.APJD01000011_gene6647	3.638e-81	271.0	2EESX@1|root,338KG@2|Bacteria,1RD32@1224|Proteobacteria,2U7BH@28211|Alphaproteobacteria,3JZ24@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3307)	MA20_18760	-	-	-	-	-	-	-	-	-	-	-	DUF3307
SX3_k127_1913300_1	1297865.APJD01000011_gene6646	3.582e-287	884.0	COG2358@1|root,COG2358@2|Bacteria,1NANT@1224|Proteobacteria,2U1M3@28211|Alphaproteobacteria,3JW9J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NMT1-like family	MA20_18765	-	-	-	-	-	-	-	-	-	-	-	NMT1_3
SX3_k127_1913300_16	1297865.APJD01000011_gene6645	1.99e-78	264.0	COG1873@1|root,COG1873@2|Bacteria,1N6X0@1224|Proteobacteria,2UFAR@28211|Alphaproteobacteria,3JZ09@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
SX3_k127_1913300_18	1297865.APJD01000011_gene6644	5.876e-47	171.0	2AER8@1|root,314MV@2|Bacteria,1NHCJ@1224|Proteobacteria,2UJIA@28211|Alphaproteobacteria,3K210@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1913300_11	1297865.APJD01000011_gene6643	2.793e-97	317.0	COG0664@1|root,COG0664@2|Bacteria,1PIN3@1224|Proteobacteria,2TSA8@28211|Alphaproteobacteria,3JX1T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Crp-like helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2,cNMP_binding
SX3_k127_1948724_0	1297865.APJD01000021_gene3066	0.0	1063.0	2EW85@1|root,33PM1@2|Bacteria,1MXDD@1224|Proteobacteria,2TU7X@28211|Alphaproteobacteria,3JWUG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_39245	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1948724_2	1297865.APJD01000021_gene3065	2.223e-159	505.0	COG4249@1|root,COG4249@2|Bacteria,1R3SZ@1224|Proteobacteria,2TVR0@28211|Alphaproteobacteria,3JT21@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	MA20_39250	-	-	-	-	-	-	-	-	-	-	-	Lectin_C,PG_binding_1,Peptidase_C14
SX3_k127_1948724_1	1297865.APJD01000021_gene3064	1.202e-170	539.0	COG0845@1|root,COG0845@2|Bacteria,1N202@1224|Proteobacteria,2VF1D@28211|Alphaproteobacteria,3JRQ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	MA20_39255	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_1948997_0	1297865.APJD01000006_gene4369	0.0	1650.0	COG0421@1|root,COG0421@2|Bacteria,1QVKE@1224|Proteobacteria,2U21Z@28211|Alphaproteobacteria,3JV0W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	-	-	2.5.1.16	ko:K00797	ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100	M00034,M00133	R01920,R02869,R08359	RC00021,RC00053	ko00000,ko00001,ko00002,ko01000	-	-	-	Spermine_synth
SX3_k127_1948997_1	1297865.APJD01000006_gene4368	2.672e-273	841.0	COG0303@1|root,COG1910@1|root,COG0303@2|Bacteria,COG1910@2|Bacteria,1MVD5@1224|Proteobacteria,2TVN2@28211|Alphaproteobacteria,3JU2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	HP	MoeA C-terminal region (domain IV)	MA20_10225	-	2.10.1.1	ko:K03750,ko:K07219	ko00790,ko01100,map00790,map01100	-	R09735	RC03462	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,MoeA_C,MoeA_N,PBP_like
SX3_k127_1950930_3	172088.AUGA01000037_gene3697	1.211e-121	395.0	COG4254@1|root,COG4254@2|Bacteria,1N8ZX@1224|Proteobacteria,2UH3D@28211|Alphaproteobacteria,3JQQN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FecR protein	MA20_44920	-	-	-	-	-	-	-	-	-	-	-	FecR
SX3_k127_1950930_1	1297865.APJD01000007_gene1859	1.217e-256	794.0	COG4346@1|root,COG4346@2|Bacteria,1QHX0@1224|Proteobacteria,2TVG5@28211|Alphaproteobacteria,3JT74@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	C-terminal four TMM region of protein-O-mannosyltransferase	-	-	2.4.1.109	ko:K00728	ko00514,ko00515,ko01100,map00514,map00515,map01100	-	R04072,R07620,R11399	RC00005,RC00059,RC00397	ko00000,ko00001,ko01000,ko01003	-	GT39	-	PMT,PMT_2,PMT_4TMC
SX3_k127_1950930_4	1297865.APJD01000007_gene1860	2.952e-117	384.0	COG2885@1|root,COG2885@2|Bacteria,1R6QU@1224|Proteobacteria,2TTMS@28211|Alphaproteobacteria,3JQYH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	OmpA family	-	-	-	-	-	-	-	-	-	-	-	-	OmpA
SX3_k127_1950930_5	1297865.APJD01000007_gene1861	1.84e-47	171.0	2E5T0@1|root,330HC@2|Bacteria,1N7GC@1224|Proteobacteria,2UHV0@28211|Alphaproteobacteria,3K0RW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1950930_2	1297865.APJD01000007_gene1862	1.448e-256	792.0	COG3214@1|root,COG3214@2|Bacteria,1N40B@1224|Proteobacteria,2TT7U@28211|Alphaproteobacteria,3JRUK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Winged helix DNA-binding domain	-	-	-	ko:K09927	-	-	-	-	ko00000	-	-	-	HTH_42
SX3_k127_1950930_0	1297865.APJD01000007_gene1863	6.918e-282	870.0	COG2271@1|root,COG2271@2|Bacteria,1MUEK@1224|Proteobacteria,2TS60@28211|Alphaproteobacteria,3JR21@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	MA20_44880	-	-	ko:K13021	-	-	-	-	ko00000,ko02000	2.A.1.14.3	-	-	MFS_1
SX3_k127_1963498_0	1297865.APJD01000011_gene6744	0.0	1986.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2TR2B@28211|Alphaproteobacteria,3JRS2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Sel1-like repeats.	-	-	-	ko:K07126,ko:K13582	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	PG_binding_1,Sel1
SX3_k127_1963498_1	1230476.C207_03104	1.653e-16	81.0	COG3904@1|root,COG3904@2|Bacteria,1R3Y5@1224|Proteobacteria,2U1FS@28211|Alphaproteobacteria,3JT94@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	periplasmic protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1966034_28	1297865.APJD01000001_gene5853	2.238e-22	96.0	COG1386@1|root,COG1386@2|Bacteria,1PUA6@1224|Proteobacteria,2TU64@28211|Alphaproteobacteria,3JUGS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves	scpB	-	-	ko:K06024	-	-	-	-	ko00000,ko03036	-	-	-	SMC_ScpB
SX3_k127_1966034_26	1230476.C207_01454	9.202e-41	152.0	COG1826@1|root,COG1826@2|Bacteria,1NGDP@1224|Proteobacteria,2UFBN@28211|Alphaproteobacteria,3K08F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system	tatA	GO:0003674,GO:0005215	-	ko:K03116	ko03060,ko03070,map03060,map03070	M00336	-	-	ko00000,ko00001,ko00002,ko02044	2.A.64	-	-	MttA_Hcf106
SX3_k127_1966034_17	1297865.APJD01000001_gene5851	5.598e-98	323.0	COG1826@1|root,COG1826@2|Bacteria,1N73F@1224|Proteobacteria,2UF4Z@28211|Alphaproteobacteria,3JVG6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation	tatB	GO:0003674,GO:0005215	-	ko:K03117	ko03060,ko03070,map03060,map03070	M00336	-	-	ko00000,ko00001,ko00002,ko02044	2.A.64	-	-	MttA_Hcf106
SX3_k127_1966034_14	1297865.APJD01000001_gene5850	8.787e-157	497.0	COG0805@1|root,COG0805@2|Bacteria,1MVAY@1224|Proteobacteria,2TTIX@28211|Alphaproteobacteria,3JRJG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides	tatC	-	-	ko:K03118	ko03060,ko03070,map03060,map03070	M00336	-	-	ko00000,ko00001,ko00002,ko02044	2.A.64	-	-	TatC
SX3_k127_1966034_3	1297865.APJD01000001_gene5849	2.275e-286	885.0	COG0172@1|root,COG0172@2|Bacteria,1MUJF@1224|Proteobacteria,2TR4T@28211|Alphaproteobacteria,3JRG5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)	serS	-	6.1.1.11	ko:K01875	ko00970,map00970	M00359,M00360	R03662,R08218	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Seryl_tRNA_N,tRNA-synt_2b
SX3_k127_1966034_16	1297865.APJD01000001_gene5848	5.107e-123	397.0	2A7C6@1|root,30W92@2|Bacteria,1RDBQ@1224|Proteobacteria,2U763@28211|Alphaproteobacteria,3JYSK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1966034_13	1297865.APJD01000001_gene5847	1.586e-166	523.0	COG0496@1|root,COG0496@2|Bacteria,1MVHE@1224|Proteobacteria,2TQXZ@28211|Alphaproteobacteria,3JR6Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates	surE	-	3.1.3.5	ko:K03787	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	-	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000	-	-	-	SurE
SX3_k127_1966034_20	1230476.C207_01460	6.315e-72	246.0	COG0784@1|root,COG0784@2|Bacteria,1N70P@1224|Proteobacteria,2UF5P@28211|Alphaproteobacteria,3JZER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	MA20_41525	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_1966034_15	398525.KB900701_gene4814	8.675e-129	413.0	COG2518@1|root,COG2518@2|Bacteria,1MXQC@1224|Proteobacteria,2TVCY@28211|Alphaproteobacteria,3JTHI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	pcm	-	2.1.1.77	ko:K00573	-	-	-	-	ko00000,ko01000	-	-	-	PCMT
SX3_k127_1966034_4	1297865.APJD01000001_gene5844	9.712e-267	824.0	COG0739@1|root,COG1388@1|root,COG0739@2|Bacteria,COG1388@2|Bacteria,1QV29@1224|Proteobacteria,2TW8Q@28211|Alphaproteobacteria,3JTS0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Lysin motif	lysM	-	-	-	-	-	-	-	-	-	-	-	LysM,Peptidase_M23
SX3_k127_1966034_7	1230476.C207_01465	2.267e-195	614.0	COG2607@1|root,COG2607@2|Bacteria,1MVMX@1224|Proteobacteria,2TTFE@28211|Alphaproteobacteria,3JRQI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF815)	MA20_41470	-	-	ko:K06923	-	-	-	-	ko00000	-	-	-	DUF815
SX3_k127_1966034_29	1380355.JNIJ01000024_gene2331	2.493e-07	52.0	COG1862@1|root,COG1862@2|Bacteria,1MZT2@1224|Proteobacteria,2UBZ6@28211|Alphaproteobacteria,3JYU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Preprotein translocase subunit	yajC	-	-	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	YajC
SX3_k127_1966034_22	1230476.C207_01466	2.779e-66	228.0	COG1862@1|root,COG1862@2|Bacteria,1MZT2@1224|Proteobacteria,2UBZ6@28211|Alphaproteobacteria,3JYU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Preprotein translocase subunit	yajC	-	-	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	YajC
SX3_k127_1966034_1	1297865.APJD01000001_gene5841	0.0	1033.0	COG0342@1|root,COG0342@2|Bacteria,1MV5U@1224|Proteobacteria,2TQYG@28211|Alphaproteobacteria,3JSE2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	secD	-	-	ko:K03072,ko:K12257	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	2.A.6.4,3.A.5.2,3.A.5.7	-	-	SecD_SecF,Sec_GG
SX3_k127_1966034_6	1297865.APJD01000001_gene5840	4.451e-202	632.0	COG0341@1|root,COG0341@2|Bacteria,1MU74@1224|Proteobacteria,2TSFW@28211|Alphaproteobacteria,3JUBX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	secF	-	-	ko:K03072,ko:K03074	ko03060,ko03070,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	2.A.6.4,3.A.5.2,3.A.5.7	-	-	SecD_SecF,Sec_GG
SX3_k127_1966034_19	1297865.APJD01000001_gene5839	1.764e-73	265.0	COG3737@1|root,COG3737@2|Bacteria,1N083@1224|Proteobacteria,2U95K@28211|Alphaproteobacteria,3JYVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF498/DUF598)	MA20_41450	-	-	-	-	-	-	-	-	-	-	-	DUF498
SX3_k127_1966034_10	1297865.APJD01000001_gene5838	2.057e-184	586.0	COG1562@1|root,COG1562@2|Bacteria,1MX4W@1224|Proteobacteria,2U08T@28211|Alphaproteobacteria,3JR6N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Squalene/phytoene synthase	crtB	-	2.5.1.32,2.5.1.99	ko:K02291,ko:K18163	ko00906,ko01062,ko01100,ko01110,ko04714,map00906,map01062,map01100,map01110,map04714	M00097	R02065,R04218,R07270,R10177	RC00362,RC01101,RC02869	ko00000,ko00001,ko00002,ko01000,ko01006,ko03029	-	-	-	SQS_PSY
SX3_k127_1966034_24	1297865.APJD01000001_gene5837	8.542e-51	183.0	2AA05@1|root,30Z8N@2|Bacteria,1RKAI@1224|Proteobacteria,2U9U6@28211|Alphaproteobacteria,3JZS2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1488)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1488
SX3_k127_1966034_5	1297865.APJD01000001_gene5836	5.696e-234	733.0	COG0318@1|root,COG2112@1|root,COG0318@2|Bacteria,COG2112@2|Bacteria,1R4X2@1224|Proteobacteria,2TQVY@28211|Alphaproteobacteria,3JU2U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQT	serine threonine protein kinase	MA20_41400	-	-	-	-	-	-	-	-	-	-	-	AMP-binding_C
SX3_k127_1966034_2	1297865.APJD01000001_gene5835	2.86e-308	945.0	COG1206@1|root,COG1206@2|Bacteria,1MWNQ@1224|Proteobacteria,2TR6M@28211|Alphaproteobacteria,3JSPG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs	trmFO	GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363	2.1.1.74	ko:K04094	-	-	-	-	ko00000,ko01000,ko03016,ko03036	-	-	-	GIDA
SX3_k127_1966034_27	1298867.AUES01000007_gene5052	1.112e-25	106.0	COG5457@1|root,COG5457@2|Bacteria,1N809@1224|Proteobacteria,2UF7P@28211|Alphaproteobacteria,3K150@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1127)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1127
SX3_k127_1966034_23	1297865.APJD01000001_gene5833	6.657e-52	185.0	2AERP@1|root,314NE@2|Bacteria,1NAY6@1224|Proteobacteria,2UFAT@28211|Alphaproteobacteria,3K18C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1966034_11	1230476.C207_01478	2.047e-169	536.0	COG2951@1|root,COG2951@2|Bacteria,1MVY0@1224|Proteobacteria,2TTVI@28211|Alphaproteobacteria,3JSD1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	MA20_41385	-	-	-	-	-	-	-	-	-	-	-	SLT_2
SX3_k127_1966034_9	1297865.APJD01000001_gene5831	1.964e-184	582.0	COG5473@1|root,COG5473@2|Bacteria,1MVRU@1224|Proteobacteria,2TRUD@28211|Alphaproteobacteria,3JT5T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted integral membrane protein (DUF2189)	MA20_41380	-	-	-	-	-	-	-	-	-	-	-	DUF2189
SX3_k127_1966034_21	1230476.C207_01480	3.278e-67	232.0	2C8DW@1|root,32RKY@2|Bacteria,1MZUD@1224|Proteobacteria,2UCNB@28211|Alphaproteobacteria,3JZ38@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF3597)	MA20_41375	-	-	-	-	-	-	-	-	-	-	-	DUF3597
SX3_k127_1966034_12	1297865.APJD01000001_gene5829	9.765e-168	534.0	COG0179@1|root,COG0179@2|Bacteria,1MVFA@1224|Proteobacteria,2TRTM@28211|Alphaproteobacteria,3JTVN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	-	-	3.7.1.20	ko:K16165	ko00350,ko01100,ko01120,map00350,map01100,map01120	-	R01085	RC00326,RC00446	ko00000,ko00001,ko01000	-	-	-	FAA_hydrolase
SX3_k127_1966034_25	1297865.APJD01000001_gene5828	3.632e-47	185.0	COG2388@1|root,COG2388@2|Bacteria,1N8AQ@1224|Proteobacteria,2UFVS@28211|Alphaproteobacteria,3JZRZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GCN5-related N-acetyl-transferase	-	-	-	ko:K06975	-	-	-	-	ko00000	-	-	-	Acetyltransf_CG
SX3_k127_1966034_18	1297865.APJD01000001_gene5827	2.006e-85	283.0	2DMYT@1|root,32UF9@2|Bacteria,1REV0@1224|Proteobacteria,2U8Z0@28211|Alphaproteobacteria,3K0D4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SPW repeat	-	-	-	-	-	-	-	-	-	-	-	-	SPW
SX3_k127_1966034_0	1297865.APJD01000001_gene5826	0.0	1133.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JR7R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_41335	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_1966034_8	1297865.APJD01000001_gene5825	8.63e-189	589.0	COG1661@1|root,COG1661@2|Bacteria,1MW02@1224|Proteobacteria,2TTGQ@28211|Alphaproteobacteria,3JUYE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF296)	-	-	-	-	-	-	-	-	-	-	-	-	DUF296
SX3_k127_1968191_0	504832.OCAR_7695	0.0	1041.0	COG3451@1|root,COG3451@2|Bacteria,1MXH0@1224|Proteobacteria,2TR1U@28211|Alphaproteobacteria,3JRFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	component of type IV transporter system	virB4	-	-	ko:K03199	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	CagE_TrbE_VirB
SX3_k127_1968191_4	504832.OCAR_7696	1.578e-117	389.0	2FGDE@1|root,3489K@2|Bacteria,1R96B@1224|Proteobacteria,2U4A7@28211|Alphaproteobacteria,3JWDC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1968191_3	323097.Nham_4443	4.93e-119	391.0	29I1K@1|root,304YP@2|Bacteria,1RG48@1224|Proteobacteria,2U0N8@28211|Alphaproteobacteria,3JUBT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Type IV secretion system proteins	-	-	-	-	-	-	-	-	-	-	-	-	T4SS
SX3_k127_1968191_5	504832.OCAR_7699	1.618e-21	98.0	29UZT@1|root,30GCU@2|Bacteria,1P8X7@1224|Proteobacteria,2UY0Z@28211|Alphaproteobacteria,3K5E2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1968191_1	504832.OCAR_7700	2.853e-217	677.0	COG3704@1|root,COG3704@2|Bacteria,1MW0K@1224|Proteobacteria,2U4UI@28211|Alphaproteobacteria,3K5VF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TrbL/VirB6 plasmid conjugal transfer protein	-	-	-	ko:K03201	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	TrbL
SX3_k127_1968191_2	323097.Nham_4440	5.505e-140	447.0	COG3736@1|root,COG3736@2|Bacteria,1MXRC@1224|Proteobacteria,2U2AZ@28211|Alphaproteobacteria,3JVQ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	VirB8 protein	virB8	-	-	ko:K03203	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	VirB8
SX3_k127_1968191_7	323097.Nham_4439	0.0002171	48.0	COG3504@1|root,COG3504@2|Bacteria,1MVHJ@1224|Proteobacteria,2U07J@28211|Alphaproteobacteria,3JV7J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Conjugal transfer protein	-	-	-	ko:K03204	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	CagX
SX3_k127_1976568_20	1297865.APJD01000018_gene5669	7.391e-92	301.0	COG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,2U70T@28211|Alphaproteobacteria,3JY1U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the MsrB Met sulfoxide reductase family	msrB	-	1.8.4.12	ko:K07305	-	-	-	-	ko00000,ko01000	-	-	-	SelR
SX3_k127_1976568_13	1297865.APJD01000018_gene5670	1.736e-145	462.0	COG0225@1|root,COG0225@2|Bacteria,1NC84@1224|Proteobacteria,2TTDD@28211|Alphaproteobacteria,3JTRK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	msrA_1	-	1.8.4.11	ko:K07304	-	-	-	-	ko00000,ko01000	-	-	-	PMSR
SX3_k127_1976568_6	1297865.APJD01000018_gene5671	3.78e-244	754.0	COG0507@1|root,COG0507@2|Bacteria,1MW43@1224|Proteobacteria,2TQWC@28211|Alphaproteobacteria,3JSER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	UvrD-like helicase C-terminal domain	recD	-	3.1.11.5	ko:K01144	-	-	-	-	ko00000,ko01000	-	-	-	AAA_30,UvrD_C_2
SX3_k127_1976568_3	1297865.APJD01000018_gene5672	1.186e-271	835.0	COG2141@1|root,COG2141@2|Bacteria,1MX64@1224|Proteobacteria,2TV8M@28211|Alphaproteobacteria,3JTR2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_03405	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_1976568_8	1297865.APJD01000018_gene5673	5.953e-199	623.0	COG0715@1|root,COG0715@2|Bacteria,1MV9S@1224|Proteobacteria,2TTIU@28211|Alphaproteobacteria,3JTNG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ABC transporter, phosphonate, periplasmic substrate-binding protein	-	-	-	ko:K02051,ko:K15553	ko00920,ko02010,map00920,map02010	M00188,M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16,3.A.1.17,3.A.1.17.2	-	-	NMT1,NMT1_2
SX3_k127_1976568_12	196490.AUEZ01000051_gene432	8.625e-153	489.0	COG0715@1|root,COG2141@1|root,COG0715@2|Bacteria,COG2141@2|Bacteria,1MWMV@1224|Proteobacteria,2TTIQ@28211|Alphaproteobacteria,3JT2Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Catalyzes the desulfonation of aliphatic sulfonates	ssuD	-	1.14.14.5	ko:K04091	ko00920,map00920	-	R07210,R10206	RC01779,RC02556	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
SX3_k127_1976568_5	1297865.APJD01000018_gene5675	4.943e-261	808.0	COG2141@1|root,COG2141@2|Bacteria,1MWMV@1224|Proteobacteria,2TTIQ@28211|Alphaproteobacteria,3JT2Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Catalyzes the desulfonation of aliphatic sulfonates	ssuD	-	1.14.14.5	ko:K04091	ko00920,map00920	-	R07210,R10206	RC01779,RC02556	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
SX3_k127_1976568_9	1297865.APJD01000018_gene5676	1.014e-167	528.0	COG0600@1|root,COG0600@2|Bacteria,1MWS0@1224|Proteobacteria,2VET7@28211|Alphaproteobacteria,3JQV6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	ssuC	-	-	ko:K15554	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	BPD_transp_1
SX3_k127_1976568_10	1297865.APJD01000018_gene5677	2.944e-164	529.0	COG1116@1|root,COG1116@2|Bacteria,1MUKI@1224|Proteobacteria,2TSP4@28211|Alphaproteobacteria,3JSJB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system	ssuB	-	-	ko:K15555	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.17.2	-	-	ABC_tran
SX3_k127_1976568_18	1297865.APJD01000018_gene5678	1.928e-117	379.0	COG1853@1|root,COG1853@2|Bacteria,1MZKY@1224|Proteobacteria,2U22K@28211|Alphaproteobacteria,3JSX3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
SX3_k127_1976568_24	1297865.APJD01000018_gene5679	5.388e-27	110.0	2ADSE@1|root,313HY@2|Bacteria,1N6U7@1224|Proteobacteria,2UG47@28211|Alphaproteobacteria,3K12P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_11210	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1976568_1	1297865.APJD01000018_gene5680	3.306e-293	901.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,3JTQK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Sigma-54 interaction domain	flbD	-	-	ko:K10943	ko02020,ko05111,map02020,map05111	M00515	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
SX3_k127_1976568_21	1297865.APJD01000018_gene5681	5.519e-66	225.0	COG1886@1|root,COG1886@2|Bacteria,1RGWT@1224|Proteobacteria,2UC6U@28211|Alphaproteobacteria,3JYS1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliN	GO:0005575,GO:0005623,GO:0005886,GO:0009288,GO:0009425,GO:0016020,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464,GO:0071944	-	ko:K02417	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FliMN_C
SX3_k127_1976568_17	1297865.APJD01000018_gene5682	1.071e-121	399.0	COG1317@1|root,COG1317@2|Bacteria,1NSNC@1224|Proteobacteria,2TUID@28211|Alphaproteobacteria,3JUQR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Flagellar assembly protein FliH	fliH	-	-	ko:K02411	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	FliH
SX3_k127_1976568_7	1297865.APJD01000018_gene5683	1.469e-222	691.0	COG1536@1|root,COG1536@2|Bacteria,1MV9X@1224|Proteobacteria,2TRIV@28211|Alphaproteobacteria,3JSDH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliG	-	-	ko:K02410	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliG_C,FliG_M,FliG_N
SX3_k127_1976568_0	1297865.APJD01000018_gene5684	1.54e-316	974.0	COG1766@1|root,COG1766@2|Bacteria,1MUQR@1224|Proteobacteria,2TR6J@28211|Alphaproteobacteria,3JS0P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	The M ring may be actively involved in energy transduction	fliF	-	-	ko:K02409	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	YscJ_FliF,YscJ_FliF_C
SX3_k127_1976568_23	1297865.APJD01000018_gene5685	1.622e-53	189.0	2AMHV@1|root,31CDG@2|Bacteria,1RGVA@1224|Proteobacteria,2U98Q@28211|Alphaproteobacteria,3JZCI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1153)	MA20_11245	-	-	-	-	-	-	-	-	-	-	-	DUF1153
SX3_k127_1976568_11	1297865.APJD01000018_gene5686	5.332e-160	508.0	COG0596@1|root,COG0596@2|Bacteria,1MX5U@1224|Proteobacteria,2TTK0@28211|Alphaproteobacteria,3JVHS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	MA20_06435	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_1976568_14	1297865.APJD01000018_gene5688	8.515e-141	448.0	COG1843@1|root,COG1843@2|Bacteria,1MXCG@1224|Proteobacteria,2UCHH@28211|Alphaproteobacteria,3JRET@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Required for flagellar hook formation. May act as a scaffolding protein	flgD	-	-	ko:K02389	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FLgD_tudor,FlgD,FlgD_ig
SX3_k127_1976568_2	1297865.APJD01000018_gene5689	2.232e-278	868.0	COG3144@1|root,COG3144@2|Bacteria,1N7X4@1224|Proteobacteria,2UF9W@28211|Alphaproteobacteria,3JS1U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellar hook-length control protein FliK	-	-	-	ko:K10565	-	-	-	-	ko00000,ko02035	-	-	-	Flg_hook
SX3_k127_1976568_26	1230476.C207_03205	1.413e-11	78.0	COG0482@1|root,COG0482@2|Bacteria,1MUT1@1224|Proteobacteria,2TQU7@28211|Alphaproteobacteria,3JQMX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	mnmA	-	2.8.1.13	ko:K00566	ko04122,map04122	-	R08700	RC02313,RC02315	ko00000,ko00001,ko01000,ko03016	-	-	-	tRNA_Me_trans
SX3_k127_1976568_4	1297865.APJD01000018_gene5690	3.86e-263	812.0	COG0482@1|root,COG0482@2|Bacteria,1MUT1@1224|Proteobacteria,2TQU7@28211|Alphaproteobacteria,3JQMX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	mnmA	-	2.8.1.13	ko:K00566	ko04122,map04122	-	R08700	RC02313,RC02315	ko00000,ko00001,ko01000,ko03016	-	-	-	tRNA_Me_trans
SX3_k127_1976568_15	1297865.APJD01000018_gene5691	1.625e-136	438.0	COG0500@1|root,COG2226@2|Bacteria,1MVIS@1224|Proteobacteria,2TV8R@28211|Alphaproteobacteria,3JR6F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	ubiE/COQ5 methyltransferase family	pmtA	-	2.1.1.17,2.1.1.71	ko:K00570	ko00564,ko01100,ko01110,map00564,map01100,map01110	M00091	R01320,R02056,R03424	RC00003,RC00060,RC00181,RC00496	ko00000,ko00001,ko00002,ko01000	-	-	-	Methyltransf_11
SX3_k127_1976568_22	1297865.APJD01000018_gene5692	2.254e-63	219.0	2EPTB@1|root,33HDV@2|Bacteria,1N08E@1224|Proteobacteria,2UC66@28211|Alphaproteobacteria,3K0I8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1976568_16	1297865.APJD01000018_gene5693	1.903e-127	411.0	COG0810@1|root,COG4774@1|root,COG0810@2|Bacteria,COG4774@2|Bacteria,1N8AU@1224|Proteobacteria	1224|Proteobacteria	P	Secretin and TonB N terminus short domain	-	-	-	-	-	-	-	-	-	-	-	-	STN
SX3_k127_1976568_19	1297865.APJD01000018_gene5694	1.343e-108	359.0	COG1595@1|root,COG1595@2|Bacteria,1RI9I@1224|Proteobacteria,2UCTI@28211|Alphaproteobacteria,3K0N3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Sigma-70 region 2	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_197914_1	1297865.APJD01000007_gene1946	5.076e-112	362.0	COG0503@1|root,COG0503@2|Bacteria,1MVZ6@1224|Proteobacteria,2TV7J@28211|Alphaproteobacteria,3JQWV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	apt	-	2.4.2.7	ko:K00759	ko00230,ko01100,map00230,map01100	-	R00190,R01229,R04378	RC00063	ko00000,ko00001,ko01000,ko04147	-	-	-	Pribosyltran
SX3_k127_197914_0	1297865.APJD01000007_gene1945	0.0	1465.0	COG0147@1|root,COG0512@1|root,COG0147@2|Bacteria,COG0512@2|Bacteria,1MVBJ@1224|Proteobacteria,2TRWB@28211|Alphaproteobacteria,3JU3J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Anthranilate synthase component I	trpE	-	4.1.3.27	ko:K13503	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R00985,R00986	RC00010,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	Anth_synt_I_N,Chorismate_bind,GATase
SX3_k127_197914_2	1297865.APJD01000007_gene1944	5.391e-76	259.0	COG0346@1|root,COG0346@2|Bacteria,1P5FR@1224|Proteobacteria,2TVCC@28211|Alphaproteobacteria,3JSK6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.25	ko:K16049	ko00984,ko01100,ko01120,ko01220,map00984,map01100,map01120,map01220	-	R04597	RC01610	ko00000,ko00001,ko01000	-	-	-	Glyoxalase
SX3_k127_1988313_3	1297865.APJD01000003_gene6409	4.8e-277	853.0	COG0492@1|root,COG2905@1|root,COG0492@2|Bacteria,COG2905@2|Bacteria,1MVX2@1224|Proteobacteria,2TQN3@28211|Alphaproteobacteria,3JU7C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cyclic nucleotide-monophosphate binding domain	MA20_21135	-	1.8.1.9	ko:K00384	ko00450,map00450	-	R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_3,cNMP_binding
SX3_k127_1988313_10	1230476.C207_02714	2.839e-17	82.0	2AG2X@1|root,3167C@2|Bacteria,1NGKJ@1224|Proteobacteria,2UJRM@28211|Alphaproteobacteria,3K1ZP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1988313_8	1297865.APJD01000003_gene6407	3.43e-64	220.0	2A7SP@1|root,30WRP@2|Bacteria,1REPY@1224|Proteobacteria,2U7IP@28211|Alphaproteobacteria,3JYUV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1988313_6	1297865.APJD01000003_gene6406	1.313e-168	530.0	COG3637@1|root,COG3637@2|Bacteria,1R4WV@1224|Proteobacteria,2U0V2@28211|Alphaproteobacteria,3JR5B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	OmpA-like transmembrane domain	MA20_19585	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_1988313_1	1297865.APJD01000003_gene6405	0.0	1260.0	COG0840@1|root,COG4192@1|root,COG0840@2|Bacteria,COG4192@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSEI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	chemotaxis	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal
SX3_k127_1988313_5	1297865.APJD01000003_gene6404	1.042e-240	743.0	COG0491@1|root,COG0491@2|Bacteria,1MUXF@1224|Proteobacteria,2TSYY@28211|Alphaproteobacteria,3JSHZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	MA20_19595	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_1988313_4	1297865.APJD01000003_gene6403	7.854e-274	842.0	COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,2TQXI@28211|Alphaproteobacteria,3JSGC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	5-aminolevulinic acid synthase	hemA	-	2.3.1.37	ko:K00643	ko00260,ko00860,ko01100,ko01110,map00260,map00860,map01100,map01110	-	R00830	RC00004,RC02815	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_1_2
SX3_k127_1988313_0	1297865.APJD01000003_gene6402	0.0	2215.0	COG0591@1|root,COG0642@1|root,COG0784@1|root,COG0591@2|Bacteria,COG0784@2|Bacteria,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,2TR1M@28211|Alphaproteobacteria,3JTFW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	MA20_19630	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_7,Response_reg
SX3_k127_1988313_2	1297865.APJD01000003_gene6401	2.213e-283	877.0	COG0477@1|root,COG2814@2|Bacteria,1MX1Q@1224|Proteobacteria,2TY3F@28211|Alphaproteobacteria,3K3P5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_1988313_7	1297865.APJD01000003_gene6400	5.292e-120	387.0	COG2345@1|root,COG2345@2|Bacteria,1RDXT@1224|Proteobacteria,2U1K1@28211|Alphaproteobacteria,3K1UC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_11,HTH_5,MarR_2,PadR,Replic_Relax
SX3_k127_1988313_11	1297865.APJD01000003_gene6399	2.528e-16	78.0	COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,2U06A@28211|Alphaproteobacteria,3JSMM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	transcriptional regulator, LuxR family	MA20_19670	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_1990524_9	1297865.APJD01000011_gene6806	1.489e-24	102.0	COG1287@1|root,COG1287@2|Bacteria,1N1IK@1224|Proteobacteria,2TUYH@28211|Alphaproteobacteria,3JSAB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	oligosaccharyl transferase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1990524_5	1297865.APJD01000011_gene6807	5.523e-100	326.0	COG4964@1|root,COG4964@2|Bacteria,1R3QI@1224|Proteobacteria,2UGFC@28211|Alphaproteobacteria,3JWX7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Pilus formation protein N terminal region	pilQ	-	-	-	-	-	-	-	-	-	-	-	T2SS-T3SS_pil_N
SX3_k127_1990524_6	288000.BBta_7024	9.874e-65	226.0	COG4961@1|root,COG4961@2|Bacteria,1N3XK@1224|Proteobacteria,2UBRJ@28211|Alphaproteobacteria,3JXUI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TadE-like protein	-	-	-	ko:K02651	ko04112,map04112	-	-	-	ko00000,ko00001,ko02035,ko02044	-	-	-	TadE
SX3_k127_1990524_4	1297865.APJD01000011_gene6809	2.806e-125	412.0	COG4961@1|root,COG4961@2|Bacteria,1N744@1224|Proteobacteria,2UGR2@28211|Alphaproteobacteria,3JWHX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TadE-like protein	-	-	-	-	-	-	-	-	-	-	-	-	TadE
SX3_k127_1990524_10	224911.27348412	5.035e-08	65.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_1990524_8	666684.AfiDRAFT_0603	5.388e-38	142.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,3K084@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	'Cold-shock' DNA-binding domain	QU41_19825	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
SX3_k127_1990524_7	398525.KB900701_gene2306	5.33e-57	199.0	COG0361@1|root,COG0361@2|Bacteria,1MZFU@1224|Proteobacteria,2UBRU@28211|Alphaproteobacteria,3JZIK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex	infA	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877	-	ko:K02518	-	-	-	-	ko00000,ko03012	-	-	-	eIF-1a
SX3_k127_1990524_1	1297865.APJD01000011_gene6812	9.753e-298	915.0	COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,2TR6Q@28211|Alphaproteobacteria,3JRCA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the DEAD box helicase family	rhlE	-	3.6.4.13	ko:K11927	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	DEAD,Helicase_C
SX3_k127_1990524_2	1297865.APJD01000011_gene6813	1.265e-288	889.0	COG0683@1|root,COG0683@2|Bacteria,1MU8V@1224|Proteobacteria,2TS3I@28211|Alphaproteobacteria,3JR4H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	urtA	-	-	ko:K11959	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	Peripla_BP_5
SX3_k127_1990524_0	172088.AUGA01000001_gene6493	6.758e-310	955.0	COG0559@1|root,COG0559@2|Bacteria,1MVND@1224|Proteobacteria,2TRMA@28211|Alphaproteobacteria,3JV23@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family	urtB	-	-	ko:K11960	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
SX3_k127_1990524_3	1297865.APJD01000011_gene6815	2.368e-225	702.0	COG4177@1|root,COG4177@2|Bacteria,1MUPI@1224|Proteobacteria,2TTN2@28211|Alphaproteobacteria,3JRRF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	urtC	-	-	ko:K11961	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
SX3_k127_1995622_3	1297865.APJD01000014_gene1006	2.792e-170	535.0	COG0600@1|root,COG0600@2|Bacteria,1MU6Q@1224|Proteobacteria,2TQT6@28211|Alphaproteobacteria,3JQVS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	nitrate ABC transporter	nrtB	-	-	ko:K02050,ko:K15577	ko00910,ko02010,map00910,map02010	M00188,M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16,3.A.1.16.1,3.A.1.16.2,3.A.1.17	-	-	BPD_transp_1
SX3_k127_1995622_1	1297865.APJD01000014_gene1005	1.305e-196	624.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2TUIC@28211|Alphaproteobacteria,3JW0U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	cmpD	-	-	ko:K02049,ko:K15578	ko00910,ko02010,map00910,map02010	M00188,M00438	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.16,3.A.1.16.1,3.A.1.17	-	-	ABC_tran
SX3_k127_1995622_4	1297865.APJD01000014_gene1004	1.506e-104	339.0	COG1513@1|root,COG1513@2|Bacteria,1R9X0@1224|Proteobacteria,2TQYR@28211|Alphaproteobacteria,3JV0D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide	cynS	-	4.2.1.104	ko:K01725	ko00910,map00910	-	R03546,R10079	RC00952	ko00000,ko00001,ko01000	-	-	-	Cyanate_lyase
SX3_k127_1995622_0	1297865.APJD01000014_gene1003	2.601e-290	893.0	COG0015@1|root,COG0015@2|Bacteria,1MV4B@1224|Proteobacteria,2TQUE@28211|Alphaproteobacteria,3JVZZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Adenylosuccinate lyase C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	ADSL_C,Lyase_1
SX3_k127_1995622_2	1297865.APJD01000014_gene1002	1.398e-170	537.0	COG2513@1|root,COG2513@2|Bacteria,1R3SD@1224|Proteobacteria,2TRRV@28211|Alphaproteobacteria,3JX0F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Phosphoenolpyruvate phosphomutase	-	-	-	-	-	-	-	-	-	-	-	-	PEP_mutase
SX3_k127_1995622_5	1297865.APJD01000014_gene1001	2.471e-51	183.0	COG0583@1|root,COG0583@2|Bacteria,1PMTG@1224|Proteobacteria,2TV35@28211|Alphaproteobacteria,3JU8G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2025982_6	1297865.APJD01000036_gene1565	4.626e-132	424.0	COG0528@1|root,COG0528@2|Bacteria,1N1F1@1224|Proteobacteria,2U1KT@28211|Alphaproteobacteria,3JV10@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Amino acid kinase family	-	-	-	ko:K00947	-	-	-	-	ko00000	-	-	-	AA_kinase
SX3_k127_2025982_2	1297865.APJD01000036_gene1564	1.545e-167	531.0	COG0528@1|root,COG0528@2|Bacteria,1R19J@1224|Proteobacteria,2TR23@28211|Alphaproteobacteria,3JWKZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Amino acid kinase family	-	-	-	ko:K00947	-	-	-	-	ko00000	-	-	-	AA_kinase
SX3_k127_2025982_1	1297865.APJD01000036_gene1563	5.156e-269	836.0	COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,2TRJU@28211|Alphaproteobacteria,3JTHA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA
SX3_k127_2025982_5	1297865.APJD01000036_gene1562	2.081e-143	456.0	COG0745@1|root,COG0745@2|Bacteria,1N0YI@1224|Proteobacteria,2VEXA@28211|Alphaproteobacteria,3JUSM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	-	-	-	ko:K07666	ko02020,ko02024,map02020,map02024	M00453	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_2025982_3	1297865.APJD01000036_gene1561	7.008e-158	500.0	COG4705@1|root,COG4705@2|Bacteria,1MVMJ@1224|Proteobacteria,2TS5R@28211|Alphaproteobacteria,3JQW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF347
SX3_k127_2025982_9	1230476.C207_04313	1.057e-66	231.0	COG4705@1|root,COG4705@2|Bacteria,1RFXY@1224|Proteobacteria,2U91K@28211|Alphaproteobacteria,3JYWY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2025982_4	1297865.APJD01000036_gene1559	8.479e-156	497.0	COG4705@1|root,COG4705@2|Bacteria,1MVMJ@1224|Proteobacteria,2TS5R@28211|Alphaproteobacteria,3JQKX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF347
SX3_k127_2025982_0	1297865.APJD01000036_gene1558	0.0	1382.0	COG1018@1|root,COG3576@1|root,COG1018@2|Bacteria,COG3576@2|Bacteria,1MV41@1224|Proteobacteria,2TQXP@28211|Alphaproteobacteria,3JVF5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Oxidoreductase NAD-binding domain	-	-	-	ko:K02613,ko:K07006	ko00360,ko01120,map00360,map01120	-	R09838	RC02690	ko00000,ko00001	-	-	-	FAD_binding_6,Fer2,NAD_binding_1,Putative_PNPOx
SX3_k127_2025982_7	1297865.APJD01000036_gene1557	1.021e-127	410.0	COG0625@1|root,COG0625@2|Bacteria,1MWY4@1224|Proteobacteria,2VEUH@28211|Alphaproteobacteria,3JXDG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	gstA	GO:0003674,GO:0003824,GO:0004364,GO:0005488,GO:0005515,GO:0005575,GO:0006950,GO:0008150,GO:0009635,GO:0009636,GO:0016740,GO:0016765,GO:0032991,GO:0042221,GO:0042802,GO:0042803,GO:0046983,GO:0050896	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_2025982_8	1297865.APJD01000036_gene1556	1.378e-83	276.0	COG2146@1|root,COG2146@2|Bacteria,1Q7R0@1224|Proteobacteria,2U5MW@28211|Alphaproteobacteria,3JY1F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske-like [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
SX3_k127_2033706_2	1297865.APJD01000011_gene6587	0.0	1108.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TQK7@28211|Alphaproteobacteria,3JTCI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	MA20_19395	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_2033706_0	1297865.APJD01000011_gene6588	0.0	1120.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TQK7@28211|Alphaproteobacteria,3JSF3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	MA20_19390	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_2033706_9	1297865.APJD01000011_gene6589	4.912e-200	625.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TTTE@28211|Alphaproteobacteria,3JTB8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_19385	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_2033706_12	1230476.C207_05965	1.37e-179	568.0	COG1173@1|root,COG1173@2|Bacteria,1MW3R@1224|Proteobacteria,2TUUP@28211|Alphaproteobacteria,3JVE9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	MA20_19380	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_2033706_7	1297865.APJD01000011_gene6591	4.286e-231	717.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,3JUN9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the ABC transporter superfamily	MA20_19370	-	-	ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_2033706_16	1297865.APJD01000011_gene6592	2.806e-31	132.0	2AE88@1|root,31428@2|Bacteria,1N8ZI@1224|Proteobacteria,2UGI1@28211|Alphaproteobacteria,3K0Z7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2033706_3	1297865.APJD01000011_gene6593	1.394e-298	919.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TUKZ@28211|Alphaproteobacteria,3JST2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the amidase family	MA20_19360	-	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
SX3_k127_2033706_10	1297865.APJD01000011_gene6594	4.415e-195	631.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,3JSW5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Belongs to the ABC transporter superfamily	dppD	-	-	ko:K02031	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_2033706_11	1297865.APJD01000011_gene6595	2.34e-181	570.0	COG0583@1|root,COG0583@2|Bacteria,1QBXF@1224|Proteobacteria,2U42U@28211|Alphaproteobacteria,3JV7Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2033706_13	1297865.APJD01000011_gene6596	1.317e-169	534.0	COG2050@1|root,COG2050@2|Bacteria,1R71D@1224|Proteobacteria,2U0RJ@28211|Alphaproteobacteria,3JXK8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	protein possibly involved in aromatic compounds catabolism	-	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
SX3_k127_2033706_1	1297865.APJD01000011_gene6597	0.0	1117.0	COG4618@1|root,COG4618@2|Bacteria,1NTI5@1224|Proteobacteria,2TR17@28211|Alphaproteobacteria,3JRPY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter transmembrane region	MA20_19345	-	-	ko:K06148	-	-	-	-	ko00000,ko02000	3.A.1	-	-	ABC_membrane,ABC_tran
SX3_k127_2033706_4	1297865.APJD01000011_gene6598	4.32e-264	819.0	COG0845@1|root,COG0845@2|Bacteria,1MUI8@1224|Proteobacteria,2TSP0@28211|Alphaproteobacteria,3JT9C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	TIGRFAM type I secretion membrane fusion protein, HlyD family	MA20_19340	-	-	ko:K02022	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD,HlyD_3
SX3_k127_2033706_14	1297865.APJD01000011_gene6599	3.008e-93	307.0	COG1546@1|root,COG1546@2|Bacteria,1RHXH@1224|Proteobacteria,2UACN@28211|Alphaproteobacteria,3JQZR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the CinA family	MA20_19320	-	-	-	-	-	-	-	-	-	-	-	CinA
SX3_k127_2033706_8	1297865.APJD01000011_gene6600	2.149e-213	663.0	COG0491@1|root,COG0491@2|Bacteria,1PKW8@1224|Proteobacteria,2TUW8@28211|Alphaproteobacteria,3JUHX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_2033706_5	1297865.APJD01000011_gene6601	4.406e-257	792.0	COG2159@1|root,COG2159@2|Bacteria,1MVTS@1224|Proteobacteria,2TU78@28211|Alphaproteobacteria,3JT24@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	MA20_19315	-	-	ko:K07045	-	-	-	-	ko00000	-	-	-	Amidohydro_2
SX3_k127_2033706_6	1297865.APJD01000011_gene6602	1.198e-256	790.0	COG2159@1|root,COG2159@2|Bacteria,1N0C7@1224|Proteobacteria,2TRXY@28211|Alphaproteobacteria,3JQNV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Amidohydrolase	MA20_19310	-	-	ko:K07045	-	-	-	-	ko00000	-	-	-	Amidohydro_2
SX3_k127_2033706_15	1297865.APJD01000011_gene6603	1.042e-87	294.0	COG2146@1|root,COG2146@2|Bacteria,1RAKS@1224|Proteobacteria,2U5KH@28211|Alphaproteobacteria,3JY32@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske-like [2Fe-2S] domain	MA20_19305	-	-	ko:K05710	ko00360,ko01120,ko01220,map00360,map01120,map01220	M00545	R06782,R06783	RC00098	br01602,ko00000,ko00001,ko00002	-	-	-	Rieske
SX3_k127_2053914_10	1297865.APJD01000009_gene2878	2.966e-45	166.0	28WB1@1|root,2ZIBH@2|Bacteria,1MXYB@1224|Proteobacteria,2U1VT@28211|Alphaproteobacteria,3JSP3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2053914_8	1297865.APJD01000009_gene2879	1.759e-93	308.0	28WB1@1|root,2ZIBH@2|Bacteria,1MXYB@1224|Proteobacteria,2U1VT@28211|Alphaproteobacteria,3JSP3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2053914_6	1297865.APJD01000009_gene2880	4.93e-169	531.0	COG1385@1|root,COG1385@2|Bacteria,1MXCU@1224|Proteobacteria,2TS0N@28211|Alphaproteobacteria,3JUEI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit	rsmE	-	2.1.1.193	ko:K09761	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltrans_RNA
SX3_k127_2053914_0	1297865.APJD01000009_gene2881	3.636e-247	764.0	COG3705@1|root,COG3705@2|Bacteria,1MWIG@1224|Proteobacteria,2TTQ4@28211|Alphaproteobacteria,3JRWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Histidyl-tRNA synthetase	hisZ	-	-	ko:K02502	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01071	RC02819,RC03200	ko00000,ko00001,ko00002	-	-	-	tRNA-synt_His
SX3_k127_2053914_2	1297865.APJD01000009_gene2882	4.965e-205	640.0	COG0040@1|root,COG0040@2|Bacteria,1MUCY@1224|Proteobacteria,2TT0H@28211|Alphaproteobacteria,3JTWP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity	hisG	GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.4.2.17	ko:K00765	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R01071	RC02819,RC03200	ko00000,ko00001,ko00002,ko01000	-	-	-	HisG,HisG_C
SX3_k127_2053914_1	1297865.APJD01000009_gene2883	1.14e-222	691.0	COG0463@1|root,COG0463@2|Bacteria,1MWE5@1224|Proteobacteria,2TRRT@28211|Alphaproteobacteria,3JSQQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	glycosyl transferase family 2	MA20_05865	-	-	ko:K20534	-	-	-	-	ko00000,ko01000,ko01005,ko02000	4.D.2.1.9	GT2	-	Glycos_transf_2
SX3_k127_2053914_3	1297865.APJD01000009_gene2884	3.058e-180	574.0	COG3394@1|root,COG3394@2|Bacteria,1MX3P@1224|Proteobacteria,2TV3U@28211|Alphaproteobacteria,3JSVK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	YdjC-like protein	-	-	3.5.1.105	ko:K03478	-	-	-	-	ko00000,ko01000	-	-	-	YdjC
SX3_k127_2053914_5	1297865.APJD01000009_gene2885	3.259e-171	541.0	COG3416@1|root,COG3416@2|Bacteria,1P8CZ@1224|Proteobacteria,2U6C3@28211|Alphaproteobacteria,3JQZ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2076)	-	-	-	ko:K09945	-	-	-	-	ko00000	-	-	-	DUF2076
SX3_k127_2053914_4	1297865.APJD01000009_gene2886	9.41e-175	551.0	COG1376@1|root,COG1376@2|Bacteria,1MVYT@1224|Proteobacteria,2U60K@28211|Alphaproteobacteria,3JQSZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ErfK YbiS YcfS YnhG	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_2053914_11	883078.HMPREF9695_03523	0.0002646	46.0	COG1376@1|root,COG1376@2|Bacteria,1MVYT@1224|Proteobacteria,2U60K@28211|Alphaproteobacteria,3JQSZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ErfK YbiS YcfS YnhG	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_2053914_7	1230476.C207_03474	5.046e-152	482.0	COG3143@1|root,COG3143@2|Bacteria,1MW23@1224|Proteobacteria,2TTS0@28211|Alphaproteobacteria,3JSV0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Chemotaxis phosphatase, CheZ	MA20_05885	-	-	ko:K03414	ko02030,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	CheZ
SX3_k127_2053914_9	1297865.APJD01000009_gene2888	4.938e-68	231.0	2C86A@1|root,32VZQ@2|Bacteria,1MUVK@1224|Proteobacteria,2U1E4@28211|Alphaproteobacteria,3JS19@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_05890	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_205476_2	1297865.APJD01000019_gene3253	1.395e-113	368.0	2F88F@1|root,340MM@2|Bacteria,1R8CW@1224|Proteobacteria,2TUYP@28211|Alphaproteobacteria,3JX4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_205476_6	1297865.APJD01000019_gene3252	1.298e-57	201.0	COG5470@1|root,COG5470@2|Bacteria,1RK2E@1224|Proteobacteria,2UFEM@28211|Alphaproteobacteria,3JZXF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1330)	MA20_43670	-	-	-	-	-	-	-	-	-	-	-	DUF1330
SX3_k127_205476_4	1297865.APJD01000019_gene3251	6.735e-65	222.0	2AJSQ@1|root,31AF2@2|Bacteria,1NWBS@1224|Proteobacteria,2US53@28211|Alphaproteobacteria,3K456@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_205476_7	1297865.APJD01000019_gene3250	2.794e-38	147.0	2BR2X@1|root,312QF@2|Bacteria,1N47G@1224|Proteobacteria,2UE95@28211|Alphaproteobacteria,3K090@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_205476_8	1297865.APJD01000019_gene3249	3.952e-22	98.0	29W4H@1|root,30HPD@2|Bacteria,1P94F@1224|Proteobacteria,2UYWY@28211|Alphaproteobacteria,3K5CZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_205476_5	1297865.APJD01000019_gene3248	7.695e-61	217.0	29BSY@1|root,2ZYRA@2|Bacteria,1RKPZ@1224|Proteobacteria,2UA1S@28211|Alphaproteobacteria,3JZFM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_205476_3	1297865.APJD01000019_gene3247	1.595e-83	278.0	COG3824@1|root,COG3824@2|Bacteria,1N18M@1224|Proteobacteria,2UBUK@28211|Alphaproteobacteria,3JY7M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Zincin-like metallopeptidase	MA20_43655	-	2.7.2.8	ko:K00930	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028	R02649	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	Zincin_1
SX3_k127_205476_1	1297865.APJD01000019_gene3246	3.045e-130	417.0	COG0066@1|root,COG0066@2|Bacteria,1MVXB@1224|Proteobacteria,2TRRS@28211|Alphaproteobacteria,3JS0A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	leuD	-	4.2.1.33,4.2.1.35	ko:K01704	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R10170	RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase_C
SX3_k127_205476_0	1297865.APJD01000019_gene3245	5.068e-177	554.0	COG3774@1|root,COG3774@2|Bacteria,1PWYJ@1224|Proteobacteria,2TQX7@28211|Alphaproteobacteria,3JU6S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	pathogenesis	MA20_43635	-	-	-	-	-	-	-	-	-	-	-	Gly_transf_sug
SX3_k127_2062130_1	1297865.APJD01000006_gene4336	0.0	1072.0	COG1653@1|root,COG1653@2|Bacteria,1R3Y9@1224|Proteobacteria,2VF3G@28211|Alphaproteobacteria,3K14Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_1,SBP_bac_8
SX3_k127_2062130_14	1297865.APJD01000006_gene4335	3.774e-182	574.0	COG0395@1|root,COG0395@2|Bacteria,1MVVT@1224|Proteobacteria,2TU85@28211|Alphaproteobacteria,3JW80@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02026,ko:K10229	ko02010,map02010	M00200,M00207	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.5	-	-	BPD_transp_1
SX3_k127_2062130_12	1297865.APJD01000006_gene4334	2.666e-198	623.0	COG1175@1|root,COG1175@2|Bacteria,1MUVG@1224|Proteobacteria,2U2IC@28211|Alphaproteobacteria,3K2D9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02025	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_2062130_10	1297865.APJD01000006_gene4333	1.261e-219	683.0	COG2390@1|root,COG2390@2|Bacteria,1R558@1224|Proteobacteria,2U3PY@28211|Alphaproteobacteria,3JWUJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Putative sugar-binding domain	-	-	2.7.1.28,2.7.1.29,4.6.1.15	ko:K00863	ko00051,ko00561,ko00680,ko01100,ko01120,ko01200,ko04622,map00051,map00561,map00680,map01100,map01120,map01200,map04622	M00344	R01011,R01059	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	HTH_11,HTH_Crp_2,Sugar-bind
SX3_k127_2062130_6	1297865.APJD01000006_gene4332	3.705e-287	885.0	COG0371@1|root,COG0371@2|Bacteria,1NAAM@1224|Proteobacteria,2TRFG@28211|Alphaproteobacteria,3JV91@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Iron-containing alcohol dehydrogenase	egsA	-	1.1.1.261	ko:K00096	ko00564,map00564	-	R05679,R05680	RC00029	ko00000,ko00001,ko01000	-	-	-	Fe-ADH_2
SX3_k127_2062130_18	1297865.APJD01000006_gene4331	4.031e-151	478.0	COG4221@1|root,COG4221@2|Bacteria,1MUF8@1224|Proteobacteria,2TUSA@28211|Alphaproteobacteria,3JW2H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_2062130_20	1297865.APJD01000006_gene4330	3.333e-145	462.0	COG0235@1|root,COG0235@2|Bacteria,1MW7B@1224|Proteobacteria,2U1NG@28211|Alphaproteobacteria,3JUW4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	fucA	-	4.1.2.17	ko:K01628	ko00051,ko01120,map00051,map01120	-	R02262	RC00603,RC00604	ko00000,ko00001,ko01000	-	-	-	Aldolase_II
SX3_k127_2062130_16	1297865.APJD01000006_gene4329	2.493e-180	566.0	COG0647@1|root,COG0647@2|Bacteria,1RGTG@1224|Proteobacteria,2VGU6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	Haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_6,Hydrolase_like
SX3_k127_2062130_4	1297865.APJD01000006_gene4328	3.929e-312	957.0	COG2114@1|root,COG2114@2|Bacteria,1R51D@1224|Proteobacteria,2TT6W@28211|Alphaproteobacteria,3JVJI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	Guanylate_cyc
SX3_k127_2062130_2	1297865.APJD01000006_gene4327	0.0	1020.0	COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2TTE1@28211|Alphaproteobacteria,3JVIN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA	ilvA	GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605	4.3.1.19	ko:K01754	ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230	M00570	R00220,R00996	RC00418,RC02600	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP,Thr_dehydrat_C
SX3_k127_2062130_8	1297865.APJD01000006_gene4326	1.999e-264	814.0	COG0006@1|root,COG0006@2|Bacteria,1MVJK@1224|Proteobacteria,2TVVP@28211|Alphaproteobacteria,3JSAA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Creatinase/Prolidase N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Creatinase_N,Peptidase_M24
SX3_k127_2062130_5	1297865.APJD01000006_gene4325	4.159e-298	916.0	COG0477@1|root,COG2814@2|Bacteria,1MX70@1224|Proteobacteria,2U3BI@28211|Alphaproteobacteria,3JXED@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_2062130_17	1297865.APJD01000006_gene4324	2.04e-167	526.0	COG2267@1|root,COG2267@2|Bacteria,1PIJ1@1224|Proteobacteria,2U2FG@28211|Alphaproteobacteria,3JUWG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_2062130_0	1297865.APJD01000006_gene4323	0.0	1127.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2TRHJ@28211|Alphaproteobacteria,3JW9N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
SX3_k127_2062130_15	1297865.APJD01000006_gene4322	8.136e-182	574.0	COG0583@1|root,COG0583@2|Bacteria,1R8E9@1224|Proteobacteria,2U3CQ@28211|Alphaproteobacteria,3JVQB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2062130_3	1297865.APJD01000006_gene4321	5.721e-313	960.0	COG4638@1|root,COG4638@2|Bacteria,1N6MJ@1224|Proteobacteria,2TVEE@28211|Alphaproteobacteria,3JXEV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	1.14.12.10	ko:K00479,ko:K05549	ko00362,ko00364,ko00622,ko01100,ko01120,ko01220,map00362,map00364,map00622,map01100,map01120,map01220	M00551	R05290,R05291,R05428,R05621,R05622,R05665,R08100,R08101,R08108,R08109,R08110	RC00270,RC01378,RC01450,RC01910	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,Ring_hydroxyl_A
SX3_k127_2062130_22	1297865.APJD01000006_gene4320	5.432e-106	347.0	COG5517@1|root,COG5517@2|Bacteria,1RAVG@1224|Proteobacteria,2U6A6@28211|Alphaproteobacteria,3JSRP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Ring hydroxylating beta subunit	-	-	1.14.12.10	ko:K05550	ko00362,ko00364,ko00622,ko01100,ko01120,ko01220,map00362,map00364,map00622,map01100,map01120,map01220	M00551	R05290,R05291,R05428,R05621,R05622,R05665,R08100,R08101,R08108,R08109,R08110	RC00270,RC01378,RC01450,RC01910	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Ring_hydroxyl_B
SX3_k127_2062130_23	1297865.APJD01000006_gene4319	6.773e-68	231.0	COG2146@1|root,COG2146@2|Bacteria,1N8PE@1224|Proteobacteria,2UF7G@28211|Alphaproteobacteria,3JZH1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske-like [2Fe-2S] domain	-	-	-	ko:K05710,ko:K14578	ko00360,ko00624,ko00626,ko00627,ko00633,ko00642,ko01100,ko01120,ko01220,map00360,map00624,map00626,map00627,map00633,map00642,map01100,map01120,map01220	M00534,M00545,M00638	R02968,R05422,R05423,R05424,R05425,R05426,R05427,R06782,R06783,R06909,R06930,R06937,R07704,R07706,R07709,R07710,R09159,R09233	RC00091,RC00098,RC00157,RC00274,RC00275,RC00490,RC01376,RC01377,RC01801	br01602,ko00000,ko00001,ko00002	-	-	-	Rieske
SX3_k127_2062130_7	1297865.APJD01000006_gene4318	4.021e-278	858.0	COG2271@1|root,COG2271@2|Bacteria,1QP2G@1224|Proteobacteria,2TTWW@28211|Alphaproteobacteria,3JWX3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_2062130_21	1297865.APJD01000006_gene4317	2.489e-113	389.0	COG1846@1|root,COG1846@2|Bacteria,1R8BH@1224|Proteobacteria,2U083@28211|Alphaproteobacteria,3JXMJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_2062130_24	1297865.APJD01000006_gene4316	1.962e-51	183.0	2A8Z4@1|root,30Y2X@2|Bacteria,1RHRS@1224|Proteobacteria,2U9YT@28211|Alphaproteobacteria,3JZCM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2062130_11	1297865.APJD01000006_gene4315	8.318e-210	653.0	COG2207@1|root,COG2207@2|Bacteria,1Q3UX@1224|Proteobacteria,2U3Z0@28211|Alphaproteobacteria,3JSPK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K04033	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18
SX3_k127_2062130_13	1297865.APJD01000006_gene4314	5.615e-189	591.0	COG3249@1|root,COG3249@2|Bacteria,1PR3V@1224|Proteobacteria,2U1M2@28211|Alphaproteobacteria,3JVVY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2066)	-	-	-	ko:K09938	-	-	-	-	ko00000	-	-	-	DUF2066
SX3_k127_2062130_9	1297865.APJD01000006_gene4313	1.108e-253	782.0	COG0604@1|root,COG0604@2|Bacteria,1MXUX@1224|Proteobacteria,2TTWF@28211|Alphaproteobacteria,3JTZF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_2062130_19	398525.KB900701_gene6984	7.199e-149	472.0	COG1024@1|root,COG1024@2|Bacteria,1MVQN@1224|Proteobacteria,2TUXD@28211|Alphaproteobacteria,3JVZQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_09820	-	5.3.3.18	ko:K15866	ko00360,ko01120,map00360,map01120	-	R09837,R09839	RC00004,RC00326,RC02689,RC03003	ko00000,ko00001,ko01000	-	-	-	ECH_1
SX3_k127_2063434_3	1297865.APJD01000007_gene2363	2.109e-211	657.0	COG2326@1|root,COG2326@2|Bacteria,1MVE2@1224|Proteobacteria,2TSU8@28211|Alphaproteobacteria,3JRKK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polyphosphate kinase 2 (PPK2)	MA20_17020	GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008976,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0044237	2.7.4.1	ko:K22468	ko00190,ko03018,map00190,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	PPK2
SX3_k127_2063434_2	1297865.APJD01000007_gene2364	4.122e-252	779.0	COG3970@1|root,COG3970@2|Bacteria,1MVA2@1224|Proteobacteria,2TT82@28211|Alphaproteobacteria,3JT58@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Fumarylacetoacetate (FAA) hydrolase family	MA20_14845	-	-	-	-	-	-	-	-	-	-	-	FAA_hydrolase
SX3_k127_2063434_7	1297865.APJD01000007_gene2365	2.68e-87	292.0	COG1917@1|root,COG1917@2|Bacteria,1RH1V@1224|Proteobacteria,2U990@28211|Alphaproteobacteria,3JYIP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_2063434_4	1297865.APJD01000007_gene2366	2.485e-190	594.0	COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2TUNU@28211|Alphaproteobacteria,3JUG2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2063434_5	1297865.APJD01000007_gene2367	2.177e-156	494.0	COG1028@1|root,COG1028@2|Bacteria,1R413@1224|Proteobacteria,2TW0W@28211|Alphaproteobacteria,3K6DW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_2063434_6	1380394.JADL01000002_gene1080	5.227e-108	356.0	COG0599@1|root,COG0599@2|Bacteria,1NN7W@1224|Proteobacteria,2TVCR@28211|Alphaproteobacteria,2JRYC@204441|Rhodospirillales	204441|Rhodospirillales	S	Carboxymuconolactone decarboxylase family	-	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_2063434_1	1297865.APJD01000007_gene2369	3.586e-278	857.0	COG0477@1|root,COG2814@2|Bacteria,1MXYJ@1224|Proteobacteria,2TXZ8@28211|Alphaproteobacteria,3JXWI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_2063434_0	1297865.APJD01000007_gene2370	8.383e-318	981.0	COG1570@1|root,COG1570@2|Bacteria,1QW7S@1224|Proteobacteria,2TRHG@28211|Alphaproteobacteria,3JVEV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	LTXXQ motif family protein	-	-	-	-	-	-	-	-	-	-	-	-	LTXXQ
SX3_k127_2075383_3	1096546.WYO_5932	7.789e-57	203.0	COG3618@1|root,COG3618@2|Bacteria,1N2QM@1224|Proteobacteria,2TUVT@28211|Alphaproteobacteria,1JVCZ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	PFAM amidohydrolase 2	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
SX3_k127_2075383_0	1297865.APJD01000049_gene5506	1.333e-280	872.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,3JTSN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_2075383_1	1297865.APJD01000049_gene5505	4.286e-169	543.0	COG2301@1|root,COG2301@2|Bacteria,1MW0A@1224|Proteobacteria,2TRN5@28211|Alphaproteobacteria,3JW4D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	C-C_Bond_Lyase of the TIM-Barrel fold	-	-	4.1.3.34	ko:K01644	ko02020,map02020	-	R00362	RC00067,RC01118	ko00000,ko00001,ko01000	-	-	-	HpcH_HpaI
SX3_k127_2075383_2	1297865.APJD01000049_gene5504	1.441e-105	343.0	COG3493@1|root,COG3493@2|Bacteria,1NKCA@1224|Proteobacteria,2TUQ0@28211|Alphaproteobacteria,3JXJA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	2-hydroxycarboxylate transporter family	-	-	-	-	-	-	-	-	-	-	-	-	2HCT
SX3_k127_2077842_7	1297865.APJD01000036_gene1477	1.31e-15	76.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JXQU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MMPL family	-	-	-	ko:K07789	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
SX3_k127_2077842_0	1297865.APJD01000036_gene1476	8.3e-322	990.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JSXN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	-	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_2077842_3	1297865.APJD01000036_gene1475	6.191e-237	736.0	COG0477@1|root,COG2814@2|Bacteria,1MVD0@1224|Proteobacteria,2TTBC@28211|Alphaproteobacteria,3JU1X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_2077842_4	1297865.APJD01000036_gene1474	3.108e-194	606.0	COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2TUNU@28211|Alphaproteobacteria,3JUG2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2077842_1	1297865.APJD01000036_gene1473	1.586e-254	799.0	COG1055@1|root,COG1055@2|Bacteria,1MUX4@1224|Proteobacteria,2TV05@28211|Alphaproteobacteria,3JS1B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Arsenical pump membrane protein	arsB	-	-	ko:K03893	-	-	-	-	ko00000,ko02000	2.A.45.1,3.A.4.1	-	-	ArsB,CitMHS
SX3_k127_2077842_2	1297865.APJD01000036_gene1472	2.451e-245	760.0	COG0477@1|root,COG2814@2|Bacteria,1N8TD@1224|Proteobacteria,2TTRZ@28211|Alphaproteobacteria,3JUZT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	MFS_1 like family	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_2077842_6	1297865.APJD01000036_gene1470	2.503e-18	85.0	2FFRZ@1|root,347P5@2|Bacteria,1NF7E@1224|Proteobacteria,2UHES@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2078842_10	1297865.APJD01000006_gene4624	1.853e-38	144.0	COG2982@1|root,COG2982@2|Bacteria,1MUNH@1224|Proteobacteria,2TT0W@28211|Alphaproteobacteria,3JRU3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	AsmA-like C-terminal region	asmA	-	-	ko:K07289	-	-	-	-	ko00000	-	-	-	AsmA,AsmA_2
SX3_k127_2078842_6	1297865.APJD01000006_gene4625	1.419e-69	236.0	COG0346@1|root,COG0346@2|Bacteria,1RH4X@1224|Proteobacteria,2U9S6@28211|Alphaproteobacteria,3JYZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	4.4.1.5	ko:K01759	ko00620,map00620	-	R02530	RC00004,RC00740	ko00000,ko00001,ko01000	-	-	-	Glyoxalase,Glyoxalase_2
SX3_k127_2078842_8	172088.AUGA01000004_gene3884	1.18e-50	181.0	COG4321@1|root,COG4321@2|Bacteria,1N7Z2@1224|Proteobacteria,2UF7W@28211|Alphaproteobacteria,3K0CA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ribbon-helix-helix domain	MA20_02235	-	-	-	-	-	-	-	-	-	-	-	RHH_4
SX3_k127_2078842_13	398525.KB900701_gene6628	1.384e-25	108.0	2EFUM@1|root,339KS@2|Bacteria,1NGG6@1224|Proteobacteria,2UJA7@28211|Alphaproteobacteria,3K10M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4169)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4169
SX3_k127_2078842_1	1297865.APJD01000006_gene4627	2.982e-304	935.0	COG0114@1|root,COG0114@2|Bacteria,1MUQI@1224|Proteobacteria,2TQM7@28211|Alphaproteobacteria,3JV56@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate	fumC	GO:0003674,GO:0003824,GO:0004333,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	4.2.1.2	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	M00009,M00011,M00173,M00376	R01082	RC00443	ko00000,ko00001,ko00002,ko01000	-	-	-	FumaraseC_C,Lyase_1
SX3_k127_2078842_4	1297865.APJD01000006_gene4628	1.328e-103	340.0	COG3814@1|root,COG3814@2|Bacteria,1N1FE@1224|Proteobacteria,2U7H9@28211|Alphaproteobacteria,3JW9Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Stringent starvation protein B	MA20_02250	-	-	ko:K09985	-	-	-	-	ko00000	-	-	-	SspB
SX3_k127_2078842_16	1132836.RCCGE510_12016	1.974e-08	58.0	2A9UM@1|root,30Z2G@2|Bacteria,1PQIA@1224|Proteobacteria,2V2X8@28211|Alphaproteobacteria,4BJT2@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2078842_9	398525.KB900701_gene6625	1.157e-41	162.0	COG2059@1|root,COG2059@2|Bacteria,1MZHQ@1224|Proteobacteria,2U0QZ@28211|Alphaproteobacteria,3JRKM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Chromate transporter	-	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
SX3_k127_2078842_15	224911.27354795	3.296e-11	72.0	COG2059@1|root,COG2059@2|Bacteria,1RAZW@1224|Proteobacteria,2U4CM@28211|Alphaproteobacteria,3JTFF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Chromate transporter	MA20_02260	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
SX3_k127_2078842_11	398525.KB900701_gene6624	1.618e-33	135.0	COG2059@1|root,COG2059@2|Bacteria,1RAZW@1224|Proteobacteria,2U4CM@28211|Alphaproteobacteria,3JTFF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Chromate transporter	MA20_02260	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
SX3_k127_2078842_5	1297865.APJD01000006_gene4630	4.909e-101	331.0	2D22U@1|root,32TC0@2|Bacteria,1MWUI@1224|Proteobacteria,2TSQ6@28211|Alphaproteobacteria,3JQRV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctB family	-	-	-	ko:K07794	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctB
SX3_k127_2078842_0	1297865.APJD01000006_gene4631	6.423e-309	949.0	COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,3JSXK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctA family	MA20_02270	-	-	ko:K07793	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctA
SX3_k127_2078842_2	398525.KB900701_gene6621	6.541e-198	623.0	COG3181@1|root,COG3181@2|Bacteria,1MW18@1224|Proteobacteria,2TSKY@28211|Alphaproteobacteria,3JSS0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	MA20_02275	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_2078842_3	1297865.APJD01000006_gene4633	4.819e-181	567.0	COG0207@1|root,COG0207@2|Bacteria,1MUBD@1224|Proteobacteria,2TQSB@28211|Alphaproteobacteria,3JV7Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	thyA	-	2.1.1.45	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	M00053	R02101	RC00219,RC00332	ko00000,ko00001,ko00002,ko01000	-	-	-	Thymidylat_synt
SX3_k127_2078842_7	1297865.APJD01000006_gene4634	4.037e-66	244.0	COG0454@1|root,COG0454@2|Bacteria,1QTZ4@1224|Proteobacteria,2U7E4@28211|Alphaproteobacteria,3JV2E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FR47-like protein	MA20_02285	-	2.3.1.57	ko:K00657	ko00330,ko01100,ko04216,map00330,map01100,map04216	M00135	R01154	RC00004,RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	Acetyltransf_1
SX3_k127_2078842_14	1297865.APJD01000006_gene4634	3.463e-22	95.0	COG0454@1|root,COG0454@2|Bacteria,1QTZ4@1224|Proteobacteria,2U7E4@28211|Alphaproteobacteria,3JV2E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FR47-like protein	MA20_02285	-	2.3.1.57	ko:K00657	ko00330,ko01100,ko04216,map00330,map01100,map04216	M00135	R01154	RC00004,RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	Acetyltransf_1
SX3_k127_2078842_12	1297865.APJD01000006_gene4635	2.428e-28	121.0	COG0262@1|root,COG0262@2|Bacteria,1RH0P@1224|Proteobacteria,2U9GC@28211|Alphaproteobacteria,3JQWH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis	folA	-	1.5.1.3	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	M00126,M00840	R00936,R00937,R00939,R00940,R02235,R02236,R11765	RC00109,RC00110,RC00158	ko00000,ko00001,ko00002,ko01000	-	-	-	DHFR_1
SX3_k127_2086564_25	1297865.APJD01000014_gene454	4.149e-88	291.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQU2@28211|Alphaproteobacteria,3JST9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	aidB	GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003995,GO:0005488,GO:0005515,GO:0006355,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008470,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016491,GO:0016627,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0033554,GO:0042802,GO:0043565,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0055114,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141	-	ko:K09456	-	-	-	-	ko00000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M
SX3_k127_2086564_15	1297865.APJD01000014_gene453	2.884e-166	523.0	COG1266@1|root,COG1266@2|Bacteria,1QPQ0@1224|Proteobacteria,2TTX7@28211|Alphaproteobacteria,3JSCR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CAAX protease self-immunity	-	-	-	ko:K07052	-	-	-	-	ko00000	-	-	-	Abi
SX3_k127_2086564_21	1297865.APJD01000014_gene452	1.458e-115	372.0	COG3896@1|root,COG3896@2|Bacteria,1NX1Z@1224|Proteobacteria,2U3CG@28211|Alphaproteobacteria,3K41A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Chloramphenicol phosphotransferase-like protein	-	-	-	ko:K18554	-	-	-	-	br01600,ko00000,ko01000,ko01504	-	-	-	CPT
SX3_k127_2086564_13	1297865.APJD01000014_gene451	8.852e-179	568.0	COG0679@1|root,COG0679@2|Bacteria,1N1X9@1224|Proteobacteria,2TV2I@28211|Alphaproteobacteria,3JR2H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Membrane transport protein	-	-	-	ko:K07088	-	-	-	-	ko00000	-	-	-	Mem_trans
SX3_k127_2086564_23	1297865.APJD01000014_gene450	2.396e-96	317.0	COG0816@1|root,COG0816@2|Bacteria,1RDHZ@1224|Proteobacteria,2U98Y@28211|Alphaproteobacteria,3JVCJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA	ruvX	GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	-	ko:K07447	-	-	-	-	ko00000,ko01000	-	-	-	RuvX
SX3_k127_2086564_12	1297865.APJD01000014_gene449	4.142e-185	579.0	COG0583@1|root,COG0583@2|Bacteria,1N8HZ@1224|Proteobacteria,2TV4S@28211|Alphaproteobacteria,3JRRM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	MA20_36470	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2086564_8	1297865.APJD01000014_gene448	1.381e-200	626.0	COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,2TQRT@28211|Alphaproteobacteria,3JQWB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	MA20_36475	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_2086564_7	1297865.APJD01000014_gene447	3.141e-222	690.0	COG2070@1|root,COG2070@2|Bacteria,1MU2F@1224|Proteobacteria,2TUT7@28211|Alphaproteobacteria,3JRUT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF561)	MA20_36480	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_2086564_30	1297865.APJD01000014_gene446	1.133e-51	186.0	COG0721@1|root,COG0721@2|Bacteria,1MZQP@1224|Proteobacteria,2UBSZ@28211|Alphaproteobacteria,3JZDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	gatC	-	6.3.5.6,6.3.5.7	ko:K02435	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Glu-tRNAGln
SX3_k127_2086564_32	1297865.APJD01000014_gene445	3.552e-44	162.0	2A97Q@1|root,30YCE@2|Bacteria,1N34M@1224|Proteobacteria,2UCVU@28211|Alphaproteobacteria,3K0FV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_36490	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2086564_3	1297865.APJD01000014_gene444	3.96e-319	977.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TRFY@28211|Alphaproteobacteria,3JU77@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)	gatA	-	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
SX3_k127_2086564_28	1297865.APJD01000014_gene443	3.899e-56	196.0	2C4KB@1|root,32YM4@2|Bacteria,1N74A@1224|Proteobacteria,2UHJ4@28211|Alphaproteobacteria,3JZRB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2086564_4	1297865.APJD01000014_gene442	1.182e-293	903.0	COG1752@1|root,COG1752@2|Bacteria,1MUI6@1224|Proteobacteria,2TUZ3@28211|Alphaproteobacteria,3JVGX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Patatin-like phospholipase	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin
SX3_k127_2086564_1	1297865.APJD01000014_gene441	2.5e-323	990.0	COG0064@1|root,COG0064@2|Bacteria,1MUKG@1224|Proteobacteria,2TRHX@28211|Alphaproteobacteria,3JQRE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	gatB	GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564	6.3.5.6,6.3.5.7	ko:K02434	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	GatB_N,GatB_Yqey
SX3_k127_2086564_37	666684.AfiDRAFT_3445	1.536e-06	51.0	2AG9H@1|root,316F0@2|Bacteria,1NHH5@1224|Proteobacteria,2UJH1@28211|Alphaproteobacteria,3K27W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2086564_31	1297865.APJD01000014_gene439	3.313e-48	175.0	COG0790@1|root,COG0790@2|Bacteria,1N8SR@1224|Proteobacteria,2UFFQ@28211|Alphaproteobacteria,3K0AK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	COG0790 FOG TPR repeat, SEL1 subfamily	MA20_36515	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
SX3_k127_2086564_16	1297865.APJD01000014_gene438	7.654e-150	475.0	COG0730@1|root,COG0730@2|Bacteria,1R712@1224|Proteobacteria,2U3AA@28211|Alphaproteobacteria,3JWHI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	membrane transporter protein	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_2086564_17	1297865.APJD01000014_gene437	1.85e-147	468.0	COG1917@1|root,COG2207@1|root,COG1917@2|Bacteria,COG2207@2|Bacteria,1R644@1224|Proteobacteria,2U2C3@28211|Alphaproteobacteria,3JRWS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,Cupin_2,HTH_18
SX3_k127_2086564_6	1297865.APJD01000014_gene436	1.724e-263	813.0	COG0477@1|root,COG2814@2|Bacteria,1MVHG@1224|Proteobacteria,2TWR2@28211|Alphaproteobacteria,3JVDD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_2086564_22	1297865.APJD01000014_gene435	4.175e-103	337.0	COG2050@1|root,COG2050@2|Bacteria,1RGVP@1224|Proteobacteria,2UAP6@28211|Alphaproteobacteria,3JUF0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_2086564_9	1297865.APJD01000014_gene434	2.92e-193	603.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,3JS5Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_2086564_14	1297865.APJD01000014_gene433	7.921e-168	527.0	COG2169@1|root,COG2169@2|Bacteria,1QTXR@1224|Proteobacteria,2UGSC@28211|Alphaproteobacteria,3JXJ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,Cupin_2,HTH_18
SX3_k127_2086564_11	1297865.APJD01000014_gene432	8.563e-187	586.0	COG0697@1|root,COG0697@2|Bacteria,1MWSU@1224|Proteobacteria,2TSWT@28211|Alphaproteobacteria,3JWVR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_2086564_2	1297865.APJD01000014_gene431	5e-323	992.0	COG4993@1|root,COG4993@2|Bacteria,1R6AV@1224|Proteobacteria,2TUKI@28211|Alphaproteobacteria,3JWX9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2086564_33	1297865.APJD01000020_gene240	1.911e-16	79.0	COG3847@1|root,COG3847@2|Bacteria,1NBIR@1224|Proteobacteria,2UGAM@28211|Alphaproteobacteria,3K1HV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Flp/Fap pilin component	-	-	-	-	-	-	-	-	-	-	-	-	Flp_Fap
SX3_k127_2086564_38	1297865.APJD01000020_gene284	2.126e-06	54.0	2ACCF@1|root,311XM@2|Bacteria,1N2IF@1224|Proteobacteria,2UEVZ@28211|Alphaproteobacteria,3K0AB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2086564_0	1297865.APJD01000020_gene6	0.0	1568.0	COG0741@1|root,COG0741@2|Bacteria,1MV3F@1224|Proteobacteria,2TRDB@28211|Alphaproteobacteria,3JT9G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	slt	-	-	ko:K08309	-	-	-	-	ko00000,ko01000,ko01011	-	GH23	-	SLT
SX3_k127_2086564_10	1230476.C207_04221	7.344e-189	590.0	COG0329@1|root,COG0329@2|Bacteria,1MUCM@1224|Proteobacteria,2TR5W@28211|Alphaproteobacteria,3JTVB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)	dapA	GO:0003674,GO:0003824,GO:0006082,GO:0006090,GO:0008150,GO:0008152,GO:0008840,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044281,GO:0071704	4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000	-	-	-	DHDPS
SX3_k127_2086564_26	1297865.APJD01000020_gene8	1.224e-84	285.0	COG1970@1|root,COG1970@2|Bacteria,1RHG8@1224|Proteobacteria,2U99Y@28211|Alphaproteobacteria,3JY5H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell	mscL	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066	-	ko:K03282	-	-	-	-	ko00000,ko02000	1.A.22.1	-	-	MscL
SX3_k127_2086564_24	1297865.APJD01000020_gene9	2.093e-93	307.0	COG0691@1|root,COG0691@2|Bacteria,1RDFP@1224|Proteobacteria,2U71I@28211|Alphaproteobacteria,3JSGD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene	smpB	-	-	ko:K03664	-	-	-	-	ko00000	-	-	-	SmpB
SX3_k127_2086564_19	1297865.APJD01000020_gene10	5.352e-126	405.0	COG1225@1|root,COG1225@2|Bacteria,1MWJP@1224|Proteobacteria,2TSSW@28211|Alphaproteobacteria,3JTKD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Redoxin	MA20_36550	-	1.11.1.15	ko:K03386	ko04214,map04214	-	-	-	ko00000,ko00001,ko01000,ko04147	-	-	-	Redoxin
SX3_k127_2086564_5	1297865.APJD01000020_gene11	8.378e-268	826.0	COG4403@1|root,COG4403@2|Bacteria,1PR3F@1224|Proteobacteria,2U0RY@28211|Alphaproteobacteria,3JW5X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Lanthionine synthetase C-like protein	-	-	-	-	-	-	-	-	-	-	-	-	LANC_like
SX3_k127_2086564_20	1297865.APJD01000020_gene12	1.875e-125	406.0	COG1573@1|root,COG1573@2|Bacteria,1MW91@1224|Proteobacteria,2TSUP@28211|Alphaproteobacteria,3JVJR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	uracil-DNA glycosylase	ung	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
SX3_k127_2086564_18	1297865.APJD01000020_gene13	4.003e-134	428.0	COG1432@1|root,COG1432@2|Bacteria,1MUAE@1224|Proteobacteria,2TU5M@28211|Alphaproteobacteria,3JRNT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	NYN domain	-	-	-	-	-	-	-	-	-	-	-	-	NYN
SX3_k127_2086564_29	1040989.AWZU01000060_gene4829	5.143e-52	184.0	COG1758@1|root,COG1758@2|Bacteria,1N6TX@1224|Proteobacteria,2U9BQ@28211|Alphaproteobacteria,3JY0E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits	rpoZ	-	2.7.7.6	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb6
SX3_k127_2088514_6	69279.BG36_09035	2.336e-71	241.0	COG2135@1|root,COG2135@2|Bacteria,1PZ3Z@1224|Proteobacteria,2TTEE@28211|Alphaproteobacteria,43JKA@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Belongs to the SOS response-associated peptidase family	-	-	-	-	-	-	-	-	-	-	-	-	SRAP
SX3_k127_2088514_1	69279.BG36_09030	1.597e-181	574.0	COG0389@1|root,COG0389@2|Bacteria,1MUUH@1224|Proteobacteria,2TSJN@28211|Alphaproteobacteria,43NN0@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII	dinB	-	2.7.7.7	ko:K02346	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	IMS,IMS_C,IMS_HHH
SX3_k127_2088514_7	323097.Nham_4486	1.622e-17	87.0	297I9@1|root,2ZURH@2|Bacteria,1NERT@1224|Proteobacteria,2UMQ2@28211|Alphaproteobacteria,3K5F7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2088514_4	359.CN09_14925	6.779e-123	402.0	COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2TUNU@28211|Alphaproteobacteria,4BIYJ@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2088514_2	1449049.JONW01000006_gene3068	8.113e-180	582.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,2KFHI@204458|Caulobacterales	204458|Caulobacterales	V	ABC transporter	-	-	-	ko:K06147,ko:K18893	ko02010,map02010	-	-	-	ko00000,ko00001,ko02000	3.A.1,3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_2088514_3	460265.Mnod_2263	4.695e-165	527.0	COG0667@1|root,COG0667@2|Bacteria,1MV2Y@1224|Proteobacteria,2TS02@28211|Alphaproteobacteria,1JR0B@119045|Methylobacteriaceae	28211|Alphaproteobacteria	C	aldo keto reductase	-	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008152,GO:0009987,GO:0015672,GO:0016491,GO:0017144,GO:0030001,GO:0034220,GO:0034641,GO:0042723,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071704,GO:0071804,GO:0071805,GO:0072527,GO:0098655,GO:0098660,GO:0098662,GO:1901360,GO:1901564	1.1.1.91	ko:K05882	-	-	-	-	ko00000,ko01000	-	-	-	Aldo_ket_red
SX3_k127_2088514_5	595537.Varpa_3361	1.398e-117	390.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,2VHW3@28216|Betaproteobacteria,4AA9A@80864|Comamonadaceae	28216|Betaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	bepF	-	-	ko:K18901	-	M00698	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_2088514_0	1441629.PCH70_21290	0.0	1487.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1Z4U5@136849|Pseudomonas syringae group	1236|Gammaproteobacteria	V	COG0841 Cation multidrug efflux pump	-	-	-	ko:K18299,ko:K18902	-	M00641,M00698	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2,2.A.6.2.16	-	-	ACR_tran
SX3_k127_209076_6	1297865.APJD01000020_gene142	1.164e-92	307.0	COG1802@1|root,COG1802@2|Bacteria,1NDRT@1224|Proteobacteria,2TUKM@28211|Alphaproteobacteria,3JWY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_209076_7	1297865.APJD01000020_gene143	9.222e-90	299.0	COG3791@1|root,COG3791@2|Bacteria,1RBIH@1224|Proteobacteria,2U5D0@28211|Alphaproteobacteria,3JY48@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
SX3_k127_209076_10	1297865.APJD01000020_gene145	6.893e-52	184.0	2AKK4@1|root,31BCA@2|Bacteria,1N88U@1224|Proteobacteria,2UF4G@28211|Alphaproteobacteria,3K0KV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_209076_17	172088.AUGA01000033_gene4610	2.838e-14	72.0	COG2350@1|root,COG2350@2|Bacteria,1N9SM@1224|Proteobacteria,2UH75@28211|Alphaproteobacteria,3JZVX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
SX3_k127_209076_5	1297865.APJD01000020_gene146	6.501e-181	568.0	COG0500@1|root,COG2226@2|Bacteria,1PPKI@1224|Proteobacteria,2TRIB@28211|Alphaproteobacteria,3JRP5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	ubiE/COQ5 methyltransferase family	MA20_37085	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
SX3_k127_209076_18	224911.27355817	4.516e-05	48.0	2FJIR@1|root,34B87@2|Bacteria,1MUI1@1224|Proteobacteria,2TSUN@28211|Alphaproteobacteria,3JSV5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_209076_13	1230476.C207_05045	2.177e-33	139.0	2EHBN@1|root,33B3H@2|Bacteria,1NH2U@1224|Proteobacteria,2UJFA@28211|Alphaproteobacteria,3K200@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_209076_1	1297865.APJD01000020_gene147	1.966e-279	861.0	COG2195@1|root,COG2195@2|Bacteria,1MV7D@1224|Proteobacteria,2TRNW@28211|Alphaproteobacteria,3JSXW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Cleaves the N-terminal amino acid of tripeptides	pepT	-	3.4.11.4	ko:K01258	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_209076_11	1297865.APJD01000020_gene148	1.613e-48	177.0	COG0776@1|root,COG0776@2|Bacteria,1MZ5B@1224|Proteobacteria,2UC5G@28211|Alphaproteobacteria,3JZG5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the bacterial histone-like protein family	hupA	-	-	ko:K03530	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
SX3_k127_209076_2	1297865.APJD01000020_gene149	9.608e-277	853.0	2A5ND@1|root,30UD4@2|Bacteria,1Q5PE@1224|Proteobacteria,2U0XC@28211|Alphaproteobacteria,3JWKC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_209076_15	398525.KB900701_gene5265	1.782e-26	113.0	2AHSK@1|root,31852@2|Bacteria,1N2JH@1224|Proteobacteria,2UBVY@28211|Alphaproteobacteria,3K07U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_209076_12	1297865.APJD01000020_gene151	5.094e-37	141.0	29D5F@1|root,3003F@2|Bacteria,1N2R6@1224|Proteobacteria,2UBZR@28211|Alphaproteobacteria,3K0RI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_209076_14	1297865.APJD01000020_gene152	3.389e-32	126.0	2BP6F@1|root,311XT@2|Bacteria,1N2IN@1224|Proteobacteria,2UDWZ@28211|Alphaproteobacteria,3K0HA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_209076_3	1297865.APJD01000020_gene153	5.099e-215	672.0	COG1638@1|root,COG1638@2|Bacteria,1R6NX@1224|Proteobacteria,2U0Q1@28211|Alphaproteobacteria,3JVK4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	-	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_209076_4	1297865.APJD01000020_gene154	7.834e-202	629.0	COG0583@1|root,COG0583@2|Bacteria,1R5NZ@1224|Proteobacteria,2U0EF@28211|Alphaproteobacteria,3K2FI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_209076_9	1297865.APJD01000020_gene155	1.666e-63	220.0	COG4319@1|root,COG4319@2|Bacteria,1PIQU@1224|Proteobacteria,2UXCH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	ketosteroid isomerase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_209076_0	1297865.APJD01000020_gene156	0.0	1116.0	COG0277@1|root,COG0277@2|Bacteria,1MUPW@1224|Proteobacteria,2TUNK@28211|Alphaproteobacteria,3JWXY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	BBE,FAD_binding_4
SX3_k127_209076_16	1230476.C207_00842	2.12e-25	106.0	COG4625@1|root,COG4932@1|root,COG4625@2|Bacteria,COG4932@2|Bacteria,1MU92@1224|Proteobacteria,2TSB7@28211|Alphaproteobacteria,3JUBZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,PATR
SX3_k127_2138581_6	1230476.C207_04249	5.336e-197	617.0	COG1914@1|root,COG1914@2|Bacteria,1MW6X@1224|Proteobacteria,2TUTC@28211|Alphaproteobacteria,3JQY1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	H( )-stimulated, divalent metal cation uptake system	mntH	GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0042221,GO:0050896,GO:0051716,GO:0070887,GO:0071241,GO:0071248,GO:0071281	-	ko:K03322	-	-	-	-	ko00000,ko02000	2.A.55.2.6,2.A.55.3	-	-	Nramp
SX3_k127_2138581_4	1297865.APJD01000020_gene32	1.939e-226	704.0	COG1842@1|root,COG1842@2|Bacteria,1NB0D@1224|Proteobacteria,2TV06@28211|Alphaproteobacteria,3JVAQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	PspA/IM30 family	MA20_29850	-	-	ko:K03969	-	-	-	-	ko00000	-	-	-	PspA_IM30
SX3_k127_2138581_9	1297865.APJD01000020_gene31	2.997e-128	411.0	COG1585@1|root,COG1585@2|Bacteria,1RG29@1224|Proteobacteria,2U37H@28211|Alphaproteobacteria,3JUZA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OU	Protein of unknown function (DUF1449)	MA20_29845	-	-	-	-	-	-	-	-	-	-	-	DUF1449
SX3_k127_2138581_1	1297865.APJD01000020_gene30	0.0	1044.0	COG2268@1|root,COG2268@2|Bacteria,1P50K@1224|Proteobacteria,2TTVY@28211|Alphaproteobacteria,3JTXC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flotillin	MA20_29840	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944	-	ko:K07192	ko04910,map04910	-	-	-	ko00000,ko00001,ko03036,ko04131,ko04147	-	-	-	Band_7,Flot
SX3_k127_2138581_3	1297865.APJD01000020_gene29	1.377e-243	758.0	COG0477@1|root,COG2814@2|Bacteria,1R3YS@1224|Proteobacteria,2TT98@28211|Alphaproteobacteria,3JRGC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Transmembrane secretion effector	MA20_36670	-	-	-	-	-	-	-	-	-	-	-	MFS_1,MFS_3
SX3_k127_2138581_2	1297865.APJD01000020_gene28	5.692e-276	852.0	COG2114@1|root,COG2114@2|Bacteria,1QTFI@1224|Proteobacteria,2TRNP@28211|Alphaproteobacteria,3JSE5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	MA20_36665	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc
SX3_k127_2138581_11	1297865.APJD01000020_gene27	8.743e-34	133.0	2AEZR@1|root,314XU@2|Bacteria,1NBYQ@1224|Proteobacteria,2UG51@28211|Alphaproteobacteria,3K16K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2138581_7	1297865.APJD01000020_gene26	2.058e-174	548.0	COG0697@1|root,COG0697@2|Bacteria,1PB22@1224|Proteobacteria,2U158@28211|Alphaproteobacteria,3JUX7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_36650	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_2138581_8	1297865.APJD01000020_gene25	3.979e-170	544.0	COG1396@1|root,COG1396@2|Bacteria,1MWUC@1224|Proteobacteria,2TU04@28211|Alphaproteobacteria,3K692@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
SX3_k127_2138581_5	1297865.APJD01000020_gene24	8.658e-207	646.0	COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,2TR65@28211|Alphaproteobacteria,3JTI5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	cation efflux	czcD	-	-	ko:K16264	-	-	-	-	ko00000,ko02000	2.A.4.1	-	-	Cation_efflux
SX3_k127_2138581_0	398525.KB900701_gene5382	0.0	1474.0	COG0188@1|root,COG0188@2|Bacteria,1MURI@1224|Proteobacteria,2TQRQ@28211|Alphaproteobacteria,3JWK5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule	parC	-	-	ko:K02621	-	-	-	-	ko00000,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
SX3_k127_2138581_10	1297865.APJD01000020_gene22	1.328e-109	355.0	COG1381@1|root,COG1381@2|Bacteria,1MVEJ@1224|Proteobacteria,2TTYW@28211|Alphaproteobacteria,3JVK5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Involved in DNA repair and RecF pathway recombination	recO	-	-	ko:K03584	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecO_C,RecO_N
SX3_k127_2142621_1	1297865.APJD01000019_gene3175	2.307e-222	694.0	COG0533@1|root,COG0533@2|Bacteria,1MU6S@1224|Proteobacteria,2TSF7@28211|Alphaproteobacteria,3JRK2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction	tsaD	GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360,GO:1901564	2.3.1.234	ko:K01409	-	-	R10648	RC00070,RC00416	ko00000,ko01000,ko03016	-	-	-	Peptidase_M22
SX3_k127_2142621_2	1297865.APJD01000019_gene3174	1.08e-193	608.0	COG0240@1|root,COG0240@2|Bacteria,1MUU3@1224|Proteobacteria,2TT75@28211|Alphaproteobacteria,3JT75@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Glycerol-3-phosphate dehydrogenase	gpsA	GO:0003674,GO:0003824,GO:0006072,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0047952,GO:0052646,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576	1.1.1.94	ko:K00057	ko00564,ko01110,map00564,map01110	-	R00842,R00844	RC00029	ko00000,ko00001,ko01000	-	-	-	NAD_Gly3P_dh_C,NAD_Gly3P_dh_N
SX3_k127_2142621_0	1297865.APJD01000019_gene3173	3.717e-246	761.0	COG0657@1|root,COG0657@2|Bacteria,1RD8A@1224|Proteobacteria,2U0DE@28211|Alphaproteobacteria,3JVW6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Steryl acetyl hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3
SX3_k127_2142621_4	1297865.APJD01000019_gene3172	7.037e-87	287.0	COG2947@1|root,COG2947@2|Bacteria,1RHRU@1224|Proteobacteria,2U71N@28211|Alphaproteobacteria,3JY7K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	EVE domain	MA20_25125	-	-	-	-	-	-	-	-	-	-	-	EVE
SX3_k127_2142621_3	1297865.APJD01000019_gene3171	2.917e-122	392.0	COG3569@1|root,COG3569@2|Bacteria,1MVJ9@1224|Proteobacteria,2TUAH@28211|Alphaproteobacteria,3JRZQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Eukaryotic DNA topoisomerase I, catalytic core	MA20_25110	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	Topoisom_I
SX3_k127_2143093_8	1297865.APJD01000014_gene883	3.193e-23	98.0	COG1058@1|root,COG1058@2|Bacteria,1MVG6@1224|Proteobacteria,2TU5C@28211|Alphaproteobacteria,3JR92@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Probable molybdopterin binding domain	cinA1	-	-	-	-	-	-	-	-	-	-	-	MoCF_biosynth
SX3_k127_2143093_6	172088.AUGA01000020_gene3539	1.013e-111	361.0	COG2236@1|root,COG2236@2|Bacteria,1MWNE@1224|Proteobacteria,2TUXK@28211|Alphaproteobacteria,3JRZX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Acts on guanine, xanthine and to a lesser extent hypoxanthine	gpt	-	2.4.2.22	ko:K00769	ko00230,ko01100,ko01110,map00230,map01100,map01110	-	R01229,R02142	RC00063,RC00122	ko00000,ko00001,ko01000	-	-	-	Pribosyltran
SX3_k127_2143093_3	1297865.APJD01000014_gene881	2.351e-145	460.0	2AP53@1|root,31E6R@2|Bacteria,1Q6T5@1224|Proteobacteria,2TVR4@28211|Alphaproteobacteria,3K72F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2143093_0	1297865.APJD01000014_gene880	4.276e-223	692.0	COG0620@1|root,COG0620@2|Bacteria,1MUI9@1224|Proteobacteria,2TTWK@28211|Alphaproteobacteria,3JS6D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Cobalamin-independent synthase, Catalytic domain	MA20_32395	-	2.1.1.14,4.4.1.23	ko:K00549,ko:K22363	ko00270,ko00450,ko00625,ko01100,ko01110,ko01230,map00270,map00450,map00625,map01100,map01110,map01230	M00017	R04405,R09365,R11897,R11899	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000	-	-	-	Meth_synt_2
SX3_k127_2143093_2	1297865.APJD01000014_gene879	3.912e-155	494.0	COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,2TTVR@28211|Alphaproteobacteria,3JU3S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the GST superfamily	MA20_32390	-	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_C_3,GST_N
SX3_k127_2143093_9	1037409.BJ6T_67400	0.0004873	46.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,3JUU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337,ko:K14162	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_2143093_4	1297865.APJD01000014_gene878	3.579e-135	431.0	COG3917@1|root,COG3917@2|Bacteria,1RDNQ@1224|Proteobacteria,2VGB4@28211|Alphaproteobacteria,3JSB7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	2-hydroxychromene-2-carboxylate isomerase	MA20_32385	-	-	-	-	-	-	-	-	-	-	-	DSBA
SX3_k127_2143093_1	1297865.APJD01000014_gene877	3.117e-201	638.0	COG0604@1|root,COG0604@2|Bacteria,1MWRK@1224|Proteobacteria,2TQMF@28211|Alphaproteobacteria,3JU48@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	MA20_32380	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_2143093_5	1230476.C207_00563	3.401e-127	408.0	COG1075@1|root,COG1075@2|Bacteria,1N2W0@1224|Proteobacteria,2U0MD@28211|Alphaproteobacteria,3JT71@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	acetyltransferases and hydrolases with the alpha beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6,Hydrolase_4
SX3_k127_2143093_7	1297865.APJD01000014_gene875	4.616e-84	278.0	COG1024@1|root,COG1024@2|Bacteria,1MVPQ@1224|Proteobacteria,2TTJ4@28211|Alphaproteobacteria,3JSCJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase	MA20_32365	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_2154672_4	1297865.APJD01000014_gene705	8.859e-168	527.0	COG0654@1|root,COG0654@2|Bacteria,1MUEW@1224|Proteobacteria,2TUIB@28211|Alphaproteobacteria,3JU6H@41294|Bradyrhizobiaceae	1224|Proteobacteria	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
SX3_k127_2154672_1	1297865.APJD01000014_gene706	8.874e-236	731.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,3JVTE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K10112	ko02010,map02010	M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1	-	-	ABC_tran,TOBE_2
SX3_k127_2154672_0	1297865.APJD01000014_gene707	0.0	1007.0	COG1653@1|root,COG1653@2|Bacteria,1R4UG@1224|Proteobacteria,2TUMF@28211|Alphaproteobacteria,3JWW5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_1,SBP_bac_8
SX3_k127_2154672_2	1297865.APJD01000014_gene708	1.614e-217	681.0	COG0395@1|root,COG0395@2|Bacteria,1MXEM@1224|Proteobacteria,2TUQV@28211|Alphaproteobacteria,3JR0U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	ycjP	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_2154672_3	1297865.APJD01000014_gene709	7.085e-185	578.0	COG1175@1|root,COG1175@2|Bacteria,1NAZ3@1224|Proteobacteria,2U2JJ@28211|Alphaproteobacteria,3JR66@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02025	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_2154672_5	1297865.APJD01000014_gene710	6.308e-54	190.0	COG0524@1|root,COG0524@2|Bacteria,1MV5B@1224|Proteobacteria,2TSUM@28211|Alphaproteobacteria,3JV0G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway	rbsK	-	2.7.1.15	ko:K00852	ko00030,map00030	-	R01051,R02750	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	PfkB
SX3_k127_2157661_10	1297865.APJD01000010_gene4990	5.566e-57	198.0	COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,2TTVR@28211|Alphaproteobacteria,3JR7S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_27820	GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0015036,GO:0016491,GO:0016667,GO:0050896,GO:0055114	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_N,GST_N_3
SX3_k127_2157661_8	1297865.APJD01000010_gene4991	1.437e-111	361.0	COG1495@1|root,COG1495@2|Bacteria,1RKPG@1224|Proteobacteria,2U89W@28211|Alphaproteobacteria,3JUIX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Disulfide bond formation protein DsbB	-	-	-	-	-	-	-	-	-	-	-	-	DsbB
SX3_k127_2157661_12	1297865.APJD01000010_gene4992	2.284e-23	102.0	2DHZU@1|root,301ID@2|Bacteria,1N863@1224|Proteobacteria,2UHUG@28211|Alphaproteobacteria,3K1FX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2157661_2	1297865.APJD01000010_gene4993	5.874e-273	841.0	COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,2TRET@28211|Alphaproteobacteria,3JQXY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate	dctA	-	-	ko:K11103	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.23.1.3,2.A.23.1.6,2.A.23.1.7	-	-	SDF
SX3_k127_2157661_0	1297865.APJD01000010_gene4994	0.0	1016.0	COG0457@1|root,COG3710@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,3JR8W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	TPR_19,Trans_reg_C
SX3_k127_2157661_3	1297865.APJD01000010_gene4995	3.186e-242	748.0	COG0596@1|root,COG0596@2|Bacteria,1MWT6@1224|Proteobacteria,2TSCE@28211|Alphaproteobacteria,3JSZA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	MA20_19645	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_2157661_9	1297865.APJD01000010_gene4996	8.197e-76	256.0	COG1393@1|root,COG1393@2|Bacteria,1MZ6S@1224|Proteobacteria,2U98B@28211|Alphaproteobacteria,3JYSH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ArsC family	MA20_27840	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	1.20.4.1	ko:K00537	-	-	-	-	ko00000,ko01000	-	-	-	ArsC
SX3_k127_2157661_1	1297865.APJD01000010_gene4997	3.727e-304	939.0	COG1167@1|root,COG1167@2|Bacteria,1MVGT@1224|Proteobacteria,2TRK7@28211|Alphaproteobacteria,3JUC3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Aminotransferase class I and II	-	-	-	ko:K00375	-	-	-	-	ko00000,ko03000	-	-	-	Aminotran_1_2,GntR
SX3_k127_2157661_6	1297865.APJD01000010_gene4998	5.637e-129	415.0	COG3467@1|root,COG3467@2|Bacteria,1N4RH@1224|Proteobacteria	1224|Proteobacteria	S	PFAM Pyridoxamine 5'-phosphate oxidase-related	-	-	-	ko:K07005	-	-	-	-	ko00000	-	-	-	Pyridox_ox_2
SX3_k127_2157661_7	1297865.APJD01000010_gene4999	9.98e-124	397.0	COG5388@1|root,COG5388@2|Bacteria,1MY02@1224|Proteobacteria,2U114@28211|Alphaproteobacteria,3JWNF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PAS domain	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2157661_5	1297865.APJD01000010_gene5000	1.044e-132	424.0	COG5388@1|root,COG5388@2|Bacteria,1MY02@1224|Proteobacteria,2U114@28211|Alphaproteobacteria,3JWNF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PAS domain	-	-	-	-	-	-	-	-	-	-	-	-	PAS_5
SX3_k127_2157661_4	1297865.APJD01000010_gene5001	5.229e-165	520.0	COG0411@1|root,COG0411@2|Bacteria,1MX51@1224|Proteobacteria,2TTCE@28211|Alphaproteobacteria,3JR62@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	MA20_27850	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_2157661_11	1038860.AXAP01000036_gene3351	2.466e-31	125.0	COG0410@1|root,COG0410@2|Bacteria,1MUR3@1224|Proteobacteria,2TSWQ@28211|Alphaproteobacteria,3JT2Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	MA20_27855	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_2160426_10	1297865.APJD01000018_gene5646	1.853e-166	524.0	28IMV@1|root,2Z8NA@2|Bacteria,1R5B6@1224|Proteobacteria,2TRB5@28211|Alphaproteobacteria,3JS02@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2160426_6	1297865.APJD01000018_gene5645	6.769e-202	633.0	COG0697@1|root,COG0697@2|Bacteria,1MWSU@1224|Proteobacteria,2TSWT@28211|Alphaproteobacteria,3JT4H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	of the drug metabolite transporter (DMT) superfamily	MA20_03520	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_2160426_4	1297865.APJD01000018_gene5644	1.454e-208	649.0	COG0583@1|root,COG0583@2|Bacteria,1MU4E@1224|Proteobacteria,2TVFR@28211|Alphaproteobacteria,3JWVX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2160426_13	1297865.APJD01000018_gene5643	2.797e-77	259.0	2BT3Q@1|root,32N8A@2|Bacteria,1RCBY@1224|Proteobacteria,2U6U8@28211|Alphaproteobacteria,3JYK1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative lumazine-binding	-	-	-	-	-	-	-	-	-	-	-	-	Lumazine_bd_2
SX3_k127_2160426_7	1297865.APJD01000018_gene5642	1.876e-192	603.0	COG3181@1|root,COG3181@2|Bacteria,1MYJX@1224|Proteobacteria,2U07W@28211|Alphaproteobacteria,3JRR6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter substrate-binding protein	MA20_03525	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_2160426_1	1297865.APJD01000018_gene5641	0.0	1015.0	COG0840@1|root,COG4564@1|root,COG0840@2|Bacteria,COG4564@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JR63@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	histidine kinase HAMP region domain protein	MA20_03530	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal,sCache_2
SX3_k127_2160426_3	1230476.C207_06074	2.395e-221	691.0	COG1052@1|root,COG1052@2|Bacteria,1MU2D@1224|Proteobacteria,2TSMN@28211|Alphaproteobacteria,3JS4J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	MA20_03535	-	1.1.1.29,1.1.1.399,1.1.1.95	ko:K00018,ko:K00058	ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map01230	M00020,M00346	R00717,R01388,R01513	RC00031,RC00042	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_2160426_2	1297865.APJD01000018_gene5639	8.928e-292	898.0	COG1653@1|root,COG1653@2|Bacteria,1MU64@1224|Proteobacteria,2TTUB@28211|Alphaproteobacteria,3JT35@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_1,SBP_bac_8
SX3_k127_2160426_5	1297865.APJD01000018_gene5638	1.94e-207	645.0	COG1175@1|root,COG1175@2|Bacteria,1MWB7@1224|Proteobacteria,2TUAN@28211|Alphaproteobacteria,3JQUC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	MA20_03545	-	-	ko:K02025	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_2160426_8	172088.AUGA01000005_gene7748	1.149e-177	559.0	COG0395@1|root,COG0395@2|Bacteria,1N4I0@1224|Proteobacteria,2TT14@28211|Alphaproteobacteria,3JR2J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	MA20_03550	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_2160426_11	1297865.APJD01000018_gene5636	1.774e-160	508.0	COG0810@1|root,COG0810@2|Bacteria,1MZXC@1224|Proteobacteria,2UCBT@28211|Alphaproteobacteria,3JURP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Gram-negative bacterial TonB protein C-terminal	tonB	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_2,TonB_C
SX3_k127_2160426_12	1297865.APJD01000018_gene5635	6.052e-87	287.0	COG0848@1|root,COG0848@2|Bacteria,1RDJZ@1224|Proteobacteria,2U77T@28211|Alphaproteobacteria,3JZ9T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Biopolymer transport protein ExbD/TolR	exbD	-	-	ko:K03559,ko:K03560	-	-	-	-	ko00000,ko02000	1.A.30.2.1,1.A.30.2.2	-	-	ExbD
SX3_k127_2160426_9	1297865.APJD01000018_gene5634	7.196e-168	532.0	COG0811@1|root,COG0811@2|Bacteria,1MXHR@1224|Proteobacteria,2TQNN@28211|Alphaproteobacteria,3JSIQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Outer membrane transport energization protein ExbB	exbB	-	-	ko:K03561	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	MotA_ExbB
SX3_k127_2160426_15	696748.ASU2_10055	3.443e-33	138.0	COG0635@1|root,COG3721@1|root,COG0635@2|Bacteria,COG3721@2|Bacteria,1NTDN@1224|Proteobacteria,1RPGS@1236|Gammaproteobacteria,1Y711@135625|Pasteurellales	135625|Pasteurellales	HP	Coproporphyrinogen III oxidase of Proteobacteria UniRef RepID B3GYK4_ACTP7	chuW	-	2.1.1.342	ko:K21936	-	-	R11700	-	ko00000,ko01000	-	-	-	ChuX_HutX,Radical_SAM
SX3_k127_2160426_14	1297865.APJD01000018_gene5632	5.881e-70	238.0	COG2329@1|root,COG2329@2|Bacteria,1MZKW@1224|Proteobacteria,2UC1E@28211|Alphaproteobacteria,3JYZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	MA20_03580	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_2160426_0	1297865.APJD01000018_gene5631	0.0	1420.0	COG1629@1|root,COG4771@2|Bacteria,1MX42@1224|Proteobacteria,2TR9M@28211|Alphaproteobacteria,3JSUY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K16087	-	-	-	-	ko00000,ko02000	1.B.14.2	-	-	Plug,TonB_dep_Rec
SX3_k127_2174342_14	398525.KB900701_gene3326	3.872e-32	128.0	COG1024@1|root,COG1024@2|Bacteria,1Q67Q@1224|Proteobacteria,2U2T5@28211|Alphaproteobacteria,3JRE3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_2174342_12	1297865.APJD01000007_gene2153	7.963e-108	353.0	COG2080@1|root,COG2080@2|Bacteria,1MY3F@1224|Proteobacteria,2TRGH@28211|Alphaproteobacteria,3JX53@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	-	-	-	ko:K13483	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002	-	-	-	Fer2,Fer2_2
SX3_k127_2174342_5	1297865.APJD01000007_gene2154	1.893e-195	614.0	COG1319@1|root,COG1319@2|Bacteria,1MVJS@1224|Proteobacteria,2TRAR@28211|Alphaproteobacteria,3JR53@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.17.1.4,1.3.7.9	ko:K04109,ko:K11178	ko00230,ko00362,ko00627,ko01100,ko01120,ko01220,map00230,map00362,map00627,map01100,map01120,map01220	M00546	R01768,R02103,R05316	RC00143,RC00490	ko00000,ko00001,ko00002,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
SX3_k127_2174342_0	1297865.APJD01000007_gene2155	0.0	1440.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TRFN@28211|Alphaproteobacteria,3JSKD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.17.1.4	ko:K11177	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_2174342_10	1297865.APJD01000007_gene2156	8.244e-120	386.0	COG2318@1|root,COG2318@2|Bacteria,1R974@1224|Proteobacteria,2U4ZA@28211|Alphaproteobacteria,3JQW4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DinB family	-	-	-	-	-	-	-	-	-	-	-	-	DinB
SX3_k127_2174342_6	1297865.APJD01000007_gene2157	1.527e-183	575.0	COG0583@1|root,COG0583@2|Bacteria,1Q8UG@1224|Proteobacteria,2U10W@28211|Alphaproteobacteria,3JSDJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	ko:K05817	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_2174342_8	1297865.APJD01000007_gene2158	4.187e-142	452.0	29FKD@1|root,302I2@2|Bacteria,1R4W3@1224|Proteobacteria,2U13S@28211|Alphaproteobacteria,3JWAQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2174342_7	1297865.APJD01000007_gene2159	7.348e-153	483.0	COG0346@1|root,COG0346@2|Bacteria,1MXZY@1224|Proteobacteria,2U2AQ@28211|Alphaproteobacteria,3JWWA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_2174342_9	1297865.APJD01000007_gene2160	1.59e-127	412.0	COG4961@1|root,COG4961@2|Bacteria,1N744@1224|Proteobacteria,2UGR2@28211|Alphaproteobacteria,3JUY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TadE-like protein	-	-	-	-	-	-	-	-	-	-	-	-	TadE
SX3_k127_2174342_11	1297865.APJD01000007_gene2161	4.009e-110	357.0	COG4961@1|root,COG4961@2|Bacteria,1N3XK@1224|Proteobacteria,2U5EP@28211|Alphaproteobacteria,3K68F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TadE-like protein	-	-	-	-	-	-	-	-	-	-	-	-	TadE
SX3_k127_2174342_3	1297865.APJD01000007_gene2162	1.34e-300	924.0	COG4961@1|root,COG4961@2|Bacteria,1NN97@1224|Proteobacteria,2TS6W@28211|Alphaproteobacteria,3JVNP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Putative Flp pilus-assembly TadE/G-like	-	-	-	-	-	-	-	-	-	-	-	-	Tad
SX3_k127_2174342_2	1297865.APJD01000007_gene2163	0.0	1172.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQJS@28211|Alphaproteobacteria,3JR5D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	mmgC	-	1.3.8.1,1.3.8.7	ko:K00248,ko:K00249,ko:K20035	ko00071,ko00280,ko00410,ko00640,ko00650,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map00650,map00920,map01100,map01110,map01120,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01178,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754,R11130	RC00052,RC00068,RC00076,RC00095,RC00120,RC00148,RC00246,RC03363	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_M,Acyl-CoA_dh_N,AcylCoA_DH_N
SX3_k127_2174342_13	1297865.APJD01000007_gene2164	6.583e-93	312.0	COG2050@1|root,COG2050@2|Bacteria,1RDVV@1224|Proteobacteria,2UANF@28211|Alphaproteobacteria,3K1BX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_2174342_1	1297865.APJD01000007_gene2165	0.0	1192.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JSR7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_09220	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_2174342_4	1297865.APJD01000007_gene2166	8.059e-208	646.0	COG0604@1|root,COG0604@2|Bacteria,1MX8A@1224|Proteobacteria,2TUVG@28211|Alphaproteobacteria,3JTCJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	-	-	1.1.1.1	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_2187184_1	1230476.C207_07102	0.0	1200.0	COG0493@1|root,COG1143@1|root,COG0493@2|Bacteria,COG1143@2|Bacteria,1MU2H@1224|Proteobacteria,2TQK5@28211|Alphaproteobacteria,3JSD0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	MA20_01050	-	1.17.1.10	ko:K15022	ko00680,ko00720,ko01120,ko01200,map00680,map00720,map01120,map01200	M00377	R00134	RC02796	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer4_20,Fer4_7,NADH_4Fe-4S,Pyr_redox_2,Pyr_redox_3
SX3_k127_2187184_3	1297865.APJD01000006_gene4418	1.903e-132	431.0	2DMMM@1|root,32SHA@2|Bacteria,1N257@1224|Proteobacteria,2TRFF@28211|Alphaproteobacteria,3JVIR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_2187184_0	1297865.APJD01000006_gene4419	0.0	1410.0	COG4249@1|root,COG4249@2|Bacteria,1MUDG@1224|Proteobacteria,2TU22@28211|Alphaproteobacteria,3JT62@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	peptidase C14 caspase catalytic subunit p20	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
SX3_k127_2187184_2	1297865.APJD01000006_gene4420	0.0	1015.0	COG5267@1|root,COG5267@2|Bacteria,1MWJK@1224|Proteobacteria,2TSY7@28211|Alphaproteobacteria,3JXQ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1800)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1800
SX3_k127_2200077_1	1297865.APJD01000033_gene6949	7.478e-87	292.0	COG1196@1|root,COG1196@2|Bacteria,1RCVH@1224|Proteobacteria,2TZG8@28211|Alphaproteobacteria,3K5VM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	nuclear chromosome segregation	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2200077_2	1297865.APJD01000033_gene6948	7.414e-72	243.0	COG3237@1|root,COG3237@2|Bacteria,1PV2N@1224|Proteobacteria,2V6JA@28211|Alphaproteobacteria,3K25B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CsbD-like	-	-	-	-	-	-	-	-	-	-	-	-	CsbD
SX3_k127_2200077_3	1297865.APJD01000033_gene6947	1.056e-24	110.0	COG3237@1|root,COG3237@2|Bacteria,1NGW6@1224|Proteobacteria,2UI12@28211|Alphaproteobacteria,3K1GT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CsbD-like	-	-	-	-	-	-	-	-	-	-	-	-	CsbD
SX3_k127_2200077_0	1297865.APJD01000033_gene6946	3.56e-322	988.0	COG2197@1|root,COG2197@2|Bacteria,1NXKF@1224|Proteobacteria,2U1K2@28211|Alphaproteobacteria,3JXQ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,PAS_8,PAS_9
SX3_k127_2200077_4	1297865.APJD01000033_gene6945	1.148e-22	98.0	COG0782@1|root,COG0782@2|Bacteria,1RHU5@1224|Proteobacteria,2U95I@28211|Alphaproteobacteria,3JYH7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcription elongation factor, GreA/GreB, C-term	greB	-	-	-	-	-	-	-	-	-	-	-	GreA_GreB
SX3_k127_2202243_3	1297865.APJD01000021_gene3047	1.436e-139	444.0	COG0491@1|root,COG0491@2|Bacteria,1MUT2@1224|Proteobacteria,2TRG9@28211|Alphaproteobacteria,3JU78@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	MA20_39355	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_2202243_1	1297865.APJD01000021_gene3048	2.445e-318	978.0	COG0457@1|root,COG4249@1|root,COG0457@2|Bacteria,COG4249@2|Bacteria,1MVIW@1224|Proteobacteria,2TV3Y@28211|Alphaproteobacteria,3JRI6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,TPR_1,TPR_16,TPR_2,TPR_8
SX3_k127_2202243_4	1297865.APJD01000021_gene3049	4.318e-129	418.0	COG2885@1|root,COG2885@2|Bacteria,1R6QU@1224|Proteobacteria,2TTMS@28211|Alphaproteobacteria,3JUPD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the ompA family	MA20_39345	-	-	-	-	-	-	-	-	-	-	-	OmpA
SX3_k127_2202243_2	1297865.APJD01000021_gene3050	9.147e-192	599.0	COG0845@1|root,COG0845@2|Bacteria,1N202@1224|Proteobacteria,2VF1E@28211|Alphaproteobacteria,3JTNW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Barrel-sandwich domain of CusB or HlyD membrane-fusion	MA20_39340	-	-	-	-	-	-	-	-	-	-	-	HlyD_D23
SX3_k127_2202243_0	1297865.APJD01000021_gene3051	0.0	1735.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JRUW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	MA20_39335	-	-	ko:K03296	-	-	-	-	ko00000	2.A.6.2	-	-	ACR_tran
SX3_k127_2219113_3	1297865.APJD01000033_gene6955	2.908e-121	389.0	COG1073@1|root,COG1073@2|Bacteria,1R4ZT@1224|Proteobacteria,2U56V@28211|Alphaproteobacteria,3JVW8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	alpha beta	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2219113_4	1297865.APJD01000033_gene6954	6.973e-109	372.0	COG1309@1|root,COG1309@2|Bacteria,1R8KS@1224|Proteobacteria,2TSYV@28211|Alphaproteobacteria,3JURE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_2219113_2	1297865.APJD01000033_gene6953	3.932e-217	687.0	COG2130@1|root,COG2130@2|Bacteria,1QT41@1224|Proteobacteria,2U0JC@28211|Alphaproteobacteria,3K2EP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	N-terminal domain of oxidoreductase	-	-	-	ko:K07119	-	-	-	-	ko00000	-	-	-	ADH_N_2,ADH_zinc_N
SX3_k127_2219113_1	1230476.C207_03838	2.511e-232	722.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,2TT21@28211|Alphaproteobacteria,3JTRE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K03585	ko01501,ko01503,map01501,map01503	M00646,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	2.A.6.2,8.A.1.6	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_2219113_0	1297865.APJD01000033_gene6951	0.0	1973.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JUZB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Efflux pump membrane transporter	-	-	-	ko:K03296	-	-	-	-	ko00000	2.A.6.2	-	-	ACR_tran
SX3_k127_2219113_5	1297865.APJD01000033_gene6950	9.743e-50	179.0	COG2261@1|root,COG2261@2|Bacteria,1N72W@1224|Proteobacteria,2UBU4@28211|Alphaproteobacteria,3K05G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Transglycosylase associated protein	-	-	-	-	-	-	-	-	-	-	-	-	Transgly_assoc
SX3_k127_2219113_6	1297865.APJD01000033_gene6949	1.049e-27	112.0	COG1196@1|root,COG1196@2|Bacteria,1RCVH@1224|Proteobacteria,2TZG8@28211|Alphaproteobacteria,3K5VM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	nuclear chromosome segregation	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2224153_5	936136.ARRT01000007_gene1300	3e-97	327.0	COG0846@1|root,COG0846@2|Bacteria,1Q89F@1224|Proteobacteria,2U2PP@28211|Alphaproteobacteria,4BD7D@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	SIR2-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SIR2_2
SX3_k127_2224153_7	1297865.APJD01000005_gene3836	4.182e-42	165.0	COG3655@1|root,COG3655@2|Bacteria,1N6VH@1224|Proteobacteria,2UFAM@28211|Alphaproteobacteria,3K0KB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cro/C1-type HTH DNA-binding domain	-	-	-	ko:K07727	-	-	-	-	ko00000,ko03000	-	-	-	HTH_26
SX3_k127_2224153_2	1297865.APJD01000005_gene3835	2.784e-115	372.0	2A4UW@1|root,30TGF@2|Bacteria,1MWS4@1224|Proteobacteria,2U0IF@28211|Alphaproteobacteria,3JXUP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2975)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2975
SX3_k127_2224153_3	1297865.APJD01000005_gene3834	4.443e-113	364.0	COG4731@1|root,COG4731@2|Bacteria,1N7E7@1224|Proteobacteria,2UHSI@28211|Alphaproteobacteria,3JX9P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2147)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2147
SX3_k127_2224153_8	1297865.APJD01000005_gene3833	4.564e-19	87.0	2AGCQ@1|root,316ID@2|Bacteria,1NHTS@1224|Proteobacteria,2UJQD@28211|Alphaproteobacteria,3K1QA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2224153_0	1297865.APJD01000005_gene3832	2.932e-283	873.0	COG2223@1|root,COG2223@2|Bacteria,1MVFQ@1224|Proteobacteria,2TR8Q@28211|Alphaproteobacteria,3JTQJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Major Facilitator Superfamily	MA20_15130	-	-	ko:K08177	-	-	-	-	ko00000,ko02000	2.A.1.11	-	-	MFS_1
SX3_k127_2224153_1	1297865.APJD01000005_gene3831	9.451e-268	827.0	COG2271@1|root,COG2271@2|Bacteria,1QW8U@1224|Proteobacteria,2TWTA@28211|Alphaproteobacteria,3K6P3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	ko:K08177	-	-	-	-	ko00000,ko02000	2.A.1.11	-	-	MFS_1
SX3_k127_2224153_6	1297865.APJD01000005_gene3830	1.711e-76	258.0	COG0517@1|root,COG0517@2|Bacteria,1RBR8@1224|Proteobacteria,2U5SN@28211|Alphaproteobacteria,3JYA9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain in cystathionine beta-synthase and other proteins.	MA20_15140	-	-	-	-	-	-	-	-	-	-	-	CBS
SX3_k127_2233255_0	1297865.APJD01000036_gene1512	0.0	1140.0	COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1MU7B@1224|Proteobacteria,2TRHQ@28211|Alphaproteobacteria,3JSNT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glutamate synthase	gltB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.4.1.13,1.4.1.14	ko:K00265	ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230	-	R00093,R00114,R00248	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000	-	-	-	GATase_2,GXGXG,Glu_syn_central,Glu_synthase
SX3_k127_2233255_1	1297865.APJD01000036_gene1511	5.403e-145	464.0	COG0493@1|root,COG0493@2|Bacteria,1MU2H@1224|Proteobacteria,2TSE2@28211|Alphaproteobacteria,3JS73@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH NADPH, small subunit	gltD	-	1.4.1.13,1.4.1.14	ko:K00266	ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230	-	R00093,R00114,R00248	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000	-	-	-	Fer4_20,Pyr_redox_2
SX3_k127_223333_1	1297865.APJD01000019_gene3320	1.628e-128	411.0	COG1670@1|root,COG1670@2|Bacteria,1N6Q1@1224|Proteobacteria,2UG72@28211|Alphaproteobacteria,3JRYG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Acetyltransferase (GNAT) domain	MA20_44020	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_3
SX3_k127_223333_4	1297865.APJD01000019_gene3321	2.215e-51	182.0	COG0211@1|root,COG0211@2|Bacteria,1MZGH@1224|Proteobacteria,2UBUX@28211|Alphaproteobacteria,3JZGK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL27 family	rpmA	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02899	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L27
SX3_k127_223333_3	1230476.C207_06350	3.84e-70	239.0	COG0261@1|root,COG0261@2|Bacteria,1MZEW@1224|Proteobacteria,2UBT3@28211|Alphaproteobacteria,3JZ0N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	This protein binds to 23S rRNA in the presence of protein L20	rplU	GO:0003674,GO:0003735,GO:0005198	-	ko:K02888	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	HHH_5,Ribosomal_L21p
SX3_k127_223333_0	1297865.APJD01000019_gene3323	1.919e-197	619.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,2TS7I@28211|Alphaproteobacteria,3JSNX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI,HTH_18
SX3_k127_223333_2	1297865.APJD01000019_gene3324	3.004e-101	332.0	COG0300@1|root,COG0300@2|Bacteria,1MWNZ@1224|Proteobacteria,2TTFS@28211|Alphaproteobacteria,3JSV1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KR domain	-	-	-	ko:K07124	-	-	-	-	ko00000	-	-	-	adh_short
SX3_k127_2236047_56	1297865.APJD01000026_gene2470	1.371e-15	76.0	COG1540@1|root,COG1540@2|Bacteria,1MUYV@1224|Proteobacteria,2TQUC@28211|Alphaproteobacteria,3JT0U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0271 (lamB) family	MA20_13135	-	-	ko:K07160	-	-	-	-	ko00000	-	-	-	LamB_YcsF
SX3_k127_2236047_37	1297865.APJD01000026_gene2469	3.796e-83	276.0	2A7NF@1|root,30WKH@2|Bacteria,1REBK@1224|Proteobacteria,2U72P@28211|Alphaproteobacteria,3JYX8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_13300	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_54	1297865.APJD01000026_gene2468	7.888e-22	96.0	2AF7D@1|root,3156E@2|Bacteria,1NCR5@1224|Proteobacteria,2UF41@28211|Alphaproteobacteria,3K144@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_16	1297865.APJD01000026_gene2467	1.662e-246	772.0	COG0715@1|root,COG0715@2|Bacteria,1MWDN@1224|Proteobacteria,2TS0X@28211|Alphaproteobacteria,3JSRI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	MA20_13115	-	-	ko:K15576,ko:K22067	ko00910,ko02010,map00910,map02010	M00438	-	-	ko00000,ko00001,ko00002,ko02000,ko02022	3.A.1.16.1,3.A.1.16.2	-	-	NMT1_2
SX3_k127_2236047_33	398525.KB900701_gene4922	5.554e-114	369.0	COG3707@1|root,COG3707@2|Bacteria,1MXDV@1224|Proteobacteria,2U220@28211|Alphaproteobacteria,3JUBP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	ANTAR	nasT	-	-	ko:K07183	-	-	-	-	ko00000,ko02022	-	-	-	ANTAR,Response_reg
SX3_k127_2236047_9	1297865.APJD01000026_gene2465	9.905e-292	896.0	COG0621@1|root,COG0621@2|Bacteria,1MU7N@1224|Proteobacteria,2TQUS@28211|Alphaproteobacteria,3JRQH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12	rimO	-	2.8.4.4	ko:K14441	-	-	R10652	RC00003,RC03217	ko00000,ko01000,ko03009	-	-	-	Radical_SAM,TRAM,UPF0004
SX3_k127_2236047_38	1297865.APJD01000026_gene2464	9.499e-74	251.0	COG5331@1|root,COG5331@2|Bacteria,1N7DJ@1224|Proteobacteria	1224|Proteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	MAPEG
SX3_k127_2236047_41	1297865.APJD01000026_gene2463	3.687e-57	200.0	2CFZE@1|root,2ZZ4A@2|Bacteria,1NW60@1224|Proteobacteria,2US9J@28211|Alphaproteobacteria,3K47A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_13	1297865.APJD01000026_gene2462	1.122e-256	795.0	COG4992@1|root,COG4992@2|Bacteria,1MV3C@1224|Proteobacteria,2U0HZ@28211|Alphaproteobacteria,3JTHX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-III	MA20_13060	GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363	2.6.1.11,2.6.1.17	ko:K00821	ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00028,M00845	R02283,R04475	RC00006,RC00062	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
SX3_k127_2236047_20	1297865.APJD01000026_gene2461	1.24e-216	673.0	COG0604@1|root,COG0604@2|Bacteria,1MWBD@1224|Proteobacteria,2TS3Z@28211|Alphaproteobacteria,3JR0C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	qor	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_2236047_30	1297865.APJD01000026_gene2460	1.454e-139	445.0	COG0861@1|root,COG0861@2|Bacteria,1MWC9@1224|Proteobacteria,2TTT6@28211|Alphaproteobacteria,3JT4Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Integral membrane protein TerC family	terC	-	-	-	-	-	-	-	-	-	-	-	TerC
SX3_k127_2236047_29	1230476.C207_06751	8.014e-145	460.0	COG1183@1|root,COG1183@2|Bacteria,1NGCJ@1224|Proteobacteria,2TS1K@28211|Alphaproteobacteria,3JTX5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP	pcs	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0050520,GO:0071704,GO:0090407,GO:1901576	2.7.8.24	ko:K01004	ko00564,ko01110,map00564,map01110	-	R05794	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000	-	-	-	CDP-OH_P_transf
SX3_k127_2236047_14	1297865.APJD01000026_gene2458	8.62e-249	771.0	COG0654@1|root,COG0654@2|Bacteria,1MU6I@1224|Proteobacteria,2TT9M@28211|Alphaproteobacteria,3JSU0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	ubiH	-	-	ko:K03185	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04989,R08773	RC02670	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_2236047_21	1297865.APJD01000026_gene2457	1.432e-200	626.0	COG0679@1|root,COG0679@2|Bacteria,1PINE@1224|Proteobacteria,2TUJR@28211|Alphaproteobacteria,3JR4Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Membrane transport protein	mdcF	-	-	ko:K07088	-	-	-	-	ko00000	-	-	-	Mem_trans
SX3_k127_2236047_40	1297865.APJD01000026_gene2456	1.419e-69	236.0	COG3785@1|root,COG3785@2|Bacteria,1RHM7@1224|Proteobacteria,2U9MS@28211|Alphaproteobacteria,3JYP1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Hemimethylated DNA-binding protein YccV like	hspQ	-	-	ko:K11940	-	-	-	-	ko00000,ko03036	-	-	-	YccV-like
SX3_k127_2236047_18	172088.AUGA01000022_gene599	1.799e-238	743.0	COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,2TSPI@28211|Alphaproteobacteria,3JU62@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	araJ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K19577	-	-	-	-	ko00000,ko02000	2.A.1.2.65	-	-	MFS_1,Sugar_tr
SX3_k127_2236047_28	1297865.APJD01000026_gene2454	1.81e-149	477.0	COG5342@1|root,COG5342@2|Bacteria,1MV8Y@1224|Proteobacteria,2TS6A@28211|Alphaproteobacteria,3JRJC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Invasion associated locus B	MA20_13025	-	-	-	-	-	-	-	-	-	-	-	IalB
SX3_k127_2236047_4	1297865.APJD01000026_gene2453	0.0	1237.0	COG4166@1|root,COG4166@2|Bacteria,1MUVU@1224|Proteobacteria,2TQJX@28211|Alphaproteobacteria,3JT9M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	nikA	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_2236047_8	1297865.APJD01000026_gene2452	0.0	997.0	COG0318@1|root,COG0318@2|Bacteria,1MV6U@1224|Proteobacteria,2TT3F@28211|Alphaproteobacteria,3JSPA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	MA20_13015	-	-	-	-	-	-	-	-	-	-	-	AMP-binding
SX3_k127_2236047_15	1297865.APJD01000026_gene2451	1.97e-247	766.0	COG2199@1|root,COG3706@2|Bacteria,1N16G@1224|Proteobacteria,2U0J6@28211|Alphaproteobacteria,3JV7S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	GGDEF domain	MA20_13010	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_0	1297865.APJD01000026_gene2449	0.0	2328.0	COG1197@1|root,COG1197@2|Bacteria,1MUXG@1224|Proteobacteria,2TR2H@28211|Alphaproteobacteria,3JU46@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site	mfd	-	-	ko:K03723	ko03420,map03420	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF
SX3_k127_2236047_42	1297865.APJD01000026_gene2448	4.093e-55	194.0	COG2938@1|root,COG2938@2|Bacteria,1N6SJ@1224|Proteobacteria,2UFF5@28211|Alphaproteobacteria,3K0G7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavinator of succinate dehydrogenase	-	-	-	ko:K09159	-	-	-	-	ko00000,ko02048	-	-	-	Sdh5
SX3_k127_2236047_2	1297865.APJD01000026_gene2447	0.0	1380.0	COG1200@1|root,COG1200@2|Bacteria,1MWN2@1224|Proteobacteria,2TR86@28211|Alphaproteobacteria,3JQTX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	RecG wedge domain	recG	GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494	3.6.4.12	ko:K03655	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,Helicase_C,RecG_wedge
SX3_k127_2236047_17	1297865.APJD01000026_gene2446	2.066e-246	764.0	COG0654@1|root,COG0654@2|Bacteria,1NUP2@1224|Proteobacteria,2TUNE@28211|Alphaproteobacteria,3JVFZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
SX3_k127_2236047_39	1297865.APJD01000026_gene2445	1.381e-73	261.0	COG0607@1|root,COG0607@2|Bacteria,1Q6TG@1224|Proteobacteria,2US71@28211|Alphaproteobacteria,3K47W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	-	-	-	-	-	-	-	-	-	-	-	-	Rhodanese
SX3_k127_2236047_27	1230476.C207_01556	2.686e-155	493.0	COG2928@1|root,COG2928@2|Bacteria,1MWT5@1224|Proteobacteria,2TZPK@28211|Alphaproteobacteria,3JSAM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF502)	MA20_12960	-	-	-	-	-	-	-	-	-	-	-	DUF502
SX3_k127_2236047_5	1297865.APJD01000026_gene2443	0.0	1187.0	COG0449@1|root,COG0449@2|Bacteria,1MW4K@1224|Proteobacteria,2TQPM@28211|Alphaproteobacteria,3JU26@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source	glmS	GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.6.1.16	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	-	R00768	RC00010,RC00163,RC02752	ko00000,ko00001,ko01000,ko01002	-	-	-	GATase_6,SIS
SX3_k127_2236047_22	1297865.APJD01000026_gene2442	3.34e-200	627.0	28H7K@1|root,2Z7JT@2|Bacteria,1MV01@1224|Proteobacteria,2U0G6@28211|Alphaproteobacteria,3JYI0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system	kdgT	-	-	ko:K02526	-	-	-	-	ko00000,ko02000	2.A.10.1	-	-	KdgT
SX3_k127_2236047_11	1297865.APJD01000026_gene2441	6.851e-263	811.0	COG2199@1|root,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,2U0G1@28211|Alphaproteobacteria,3JV35@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GAF,GAF_2,GGDEF
SX3_k127_2236047_44	1297865.APJD01000026_gene2440	3.041e-50	181.0	2EJ4F@1|root,33CVP@2|Bacteria,1N6QT@1224|Proteobacteria,2UIJR@28211|Alphaproteobacteria,3K4D6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_3	1297865.APJD01000026_gene2439	0.0	1369.0	COG4716@1|root,COG4716@2|Bacteria,1MVTV@1224|Proteobacteria,2TR2G@28211|Alphaproteobacteria,3JSEG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MCRA family	-	-	4.2.1.53	ko:K10254	-	-	-	-	ko00000,ko01000	-	-	-	MCRA
SX3_k127_2236047_26	1297865.APJD01000026_gene2438	6.264e-175	551.0	COG2114@1|root,COG2114@2|Bacteria,1P8ZU@1224|Proteobacteria,2TRC7@28211|Alphaproteobacteria,3JUCZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	Guanylate_cyc
SX3_k127_2236047_19	1297865.APJD01000026_gene2437	1.134e-237	735.0	COG0388@1|root,COG0388@2|Bacteria,1MWQG@1224|Proteobacteria,2TYHX@28211|Alphaproteobacteria,3JTNQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carbon-nitrogen hydrolase	-	-	3.5.5.7	ko:K01502	ko00643,ko01120,map00643,map01120	-	R05358	RC01336	ko00000,ko00001,ko01000	-	-	-	CN_hydrolase
SX3_k127_2236047_23	1297865.APJD01000026_gene2436	2.927e-199	632.0	COG0583@1|root,COG0583@2|Bacteria,1MWVB@1224|Proteobacteria,2TQXV@28211|Alphaproteobacteria,3JTSJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2236047_47	1297865.APJD01000026_gene2435	1.418e-45	184.0	COG3162@1|root,COG3162@2|Bacteria,1N0Z2@1224|Proteobacteria,2UD8D@28211|Alphaproteobacteria,3K0DB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function, DUF485	-	-	-	-	-	-	-	-	-	-	-	-	DUF485
SX3_k127_2236047_7	1297865.APJD01000026_gene2434	0.0	1006.0	COG4147@1|root,COG4147@2|Bacteria,1MVJ8@1224|Proteobacteria,2TTA4@28211|Alphaproteobacteria,3JT27@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sodium:solute symporter family	-	-	-	ko:K14393	-	-	-	-	ko00000,ko02000	2.A.21.7	-	-	SSF
SX3_k127_2236047_10	1297865.APJD01000026_gene2433	2.158e-272	842.0	COG1207@1|root,COG1207@2|Bacteria,1MUPH@1224|Proteobacteria,2TQPS@28211|Alphaproteobacteria,3JU8H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain	glmU	-	2.3.1.157,2.7.7.23	ko:K04042,ko:K11528	ko00520,ko01100,ko01130,map00520,map01100,map01130	M00362	R00416,R05332	RC00002,RC00004,RC00166	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,NTP_transf_3
SX3_k127_2236047_12	1297865.APJD01000026_gene2432	1.077e-261	815.0	COG3170@1|root,COG3170@2|Bacteria,1MXAS@1224|Proteobacteria,2TSJF@28211|Alphaproteobacteria,3JRYK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Tfp pilus assembly protein FimV	-	-	-	-	-	-	-	-	-	-	-	-	SPOR
SX3_k127_2236047_6	1297865.APJD01000026_gene2430	0.0	1098.0	COG5309@1|root,COG5309@2|Bacteria,1MWJJ@1224|Proteobacteria,2U19Q@28211|Alphaproteobacteria,3JRWW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	beta (1-6) glucans synthase	ndvC	-	3.2.1.58	ko:K01210	ko00500,map00500	-	R00308,R03115	RC00467	ko00000,ko00001,ko01000	-	-	-	Glyco_hydro_17
SX3_k127_2236047_32	1297865.APJD01000026_gene2429	3.53e-114	372.0	2F6RD@1|root,33Z7N@2|Bacteria,1Q403@1224|Proteobacteria,2U3D2@28211|Alphaproteobacteria,3JY52@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_12925	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_1	1297865.APJD01000026_gene2428	0.0	1895.0	COG1215@1|root,COG5309@1|root,COG1215@2|Bacteria,COG5309@2|Bacteria,1MWF8@1224|Proteobacteria,2VEZT@28211|Alphaproteobacteria,3JTNP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family 21	MA20_12920	-	2.4.1.12,3.2.1.58	ko:K00694,ko:K01210	ko00500,ko01100,ko02026,map00500,map01100,map02026	-	R00308,R02889,R03115	RC00005,RC00467	ko00000,ko00001,ko01000,ko01003,ko02000	4.D.3.1.2,4.D.3.1.5,4.D.3.1.6	GT2	-	Glyco_hydro_17,Glyco_tranf_2_3,Glyco_trans_2_3
SX3_k127_2236047_46	1297865.APJD01000026_gene2427	1.19e-45	167.0	2AIKX@1|root,31936@2|Bacteria,1N2P8@1224|Proteobacteria,2UCRG@28211|Alphaproteobacteria,3K0JG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_24	1297865.APJD01000026_gene2426	2.784e-193	604.0	COG1234@1|root,COG1234@2|Bacteria,1Q4PW@1224|Proteobacteria,2U2XG@28211|Alphaproteobacteria,3JT7N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA	rnz	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267	3.1.26.11	ko:K00784	ko03013,map03013	-	-	-	ko00000,ko00001,ko01000,ko03016	-	-	-	Lactamase_B_2
SX3_k127_2236047_31	1297865.APJD01000026_gene2425	6.763e-118	382.0	COG1403@1|root,COG1403@2|Bacteria,1R7ZZ@1224|Proteobacteria,2U3ZN@28211|Alphaproteobacteria,3JRCJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	HNH endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	HNH_5
SX3_k127_2236047_50	1297865.APJD01000026_gene2424	2.474e-30	121.0	2BF6V@1|root,328ZC@2|Bacteria,1NHVA@1224|Proteobacteria,2UKZS@28211|Alphaproteobacteria,3K1SD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_49	1297865.APJD01000026_gene2423	3.158e-32	126.0	29FWV@1|root,302UJ@2|Bacteria,1NEAX@1224|Proteobacteria,2UIEG@28211|Alphaproteobacteria,3K1HS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_55	172088.AUGA01000029_gene1809	1.142e-15	80.0	2ANA9@1|root,31D8J@2|Bacteria,1P3CF@1224|Proteobacteria,2UUSI@28211|Alphaproteobacteria,3K4WJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_36	1297865.APJD01000026_gene2422	9.882e-88	291.0	2A7U3@1|root,30WT9@2|Bacteria,1RETD@1224|Proteobacteria,2U8JE@28211|Alphaproteobacteria,3JYU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_53	1297865.APJD01000026_gene2421	9.048e-24	102.0	2DIAP@1|root,302JG@2|Bacteria,1NDDJ@1224|Proteobacteria,2UFHT@28211|Alphaproteobacteria,3K1EM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_43	1297865.APJD01000026_gene2420	7.632e-54	189.0	2AITW@1|root,319AY@2|Bacteria,1N4RI@1224|Proteobacteria,2UG88@28211|Alphaproteobacteria,3K111@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3551)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3551
SX3_k127_2236047_25	1297865.APJD01000026_gene2419	1.106e-175	556.0	COG1250@1|root,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TR8E@28211|Alphaproteobacteria,3JUBU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	MA20_34330	-	1.1.1.157	ko:K00074	ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120	-	R01976,R05576,R06941	RC00029,RC00117	ko00000,ko00001,ko01000	-	-	-	3HCDH,3HCDH_N
SX3_k127_2236047_48	1297865.APJD01000026_gene2418	7.675e-33	128.0	2AHV0@1|root,3187T@2|Bacteria,1NN5K@1224|Proteobacteria,2UNJ3@28211|Alphaproteobacteria,3K1V3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_52	1297865.APJD01000026_gene2417	1.136e-24	103.0	2BGBI@1|root,32A96@2|Bacteria,1NJG5@1224|Proteobacteria,2UKJQ@28211|Alphaproteobacteria,3K1RK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_51	1297865.APJD01000026_gene2416	1.782e-29	118.0	2AFEB@1|root,315EA@2|Bacteria,1NDCZ@1224|Proteobacteria,2UHJM@28211|Alphaproteobacteria,3K12F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_45	1297865.APJD01000026_gene2415	2.692e-48	173.0	29CCH@1|root,2ZZAZ@2|Bacteria,1MZSC@1224|Proteobacteria,2UCW5@28211|Alphaproteobacteria,3K0EK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2236047_34	1297865.APJD01000026_gene2414	1.378e-108	356.0	COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,2TS80@28211|Alphaproteobacteria,3JRBA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function DUF21	tlyC	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03699	-	-	-	-	ko00000,ko02042	-	-	-	CBS,CorC_HlyC,DUF21
SX3_k127_2242031_0	1297865.APJD01000003_gene6360	4.255e-235	727.0	COG3396@1|root,COG3396@2|Bacteria,1MXUK@1224|Proteobacteria,2TTIG@28211|Alphaproteobacteria,3JSI1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	benzoyl-CoA oxygenase	boxB	-	1.14.13.208	ko:K15512	ko00362,map00362	-	R09555	RC01739	ko00000,ko00001,ko01000	-	-	-	-
SX3_k127_2242031_3	224911.27348962	0.0009052	49.0	COG2050@1|root,COG2050@2|Bacteria,1R5RX@1224|Proteobacteria,2U1DZ@28211|Alphaproteobacteria,3JVKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase-like superfamily	MA20_24410	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
SX3_k127_2242031_2	1297865.APJD01000003_gene6361	1.584e-166	527.0	COG1028@1|root,COG1028@2|Bacteria,1MVYJ@1224|Proteobacteria,2TRJ8@28211|Alphaproteobacteria,3JTBC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_22460	-	1.1.1.127	ko:K00065	ko00040,map00040	-	R01542	RC00089	ko00000,ko00001,ko01000	-	-	-	adh_short_C2
SX3_k127_2242031_1	1297865.APJD01000003_gene6362	1.245e-190	595.0	COG0726@1|root,COG0726@2|Bacteria,1MVKH@1224|Proteobacteria,2TTEI@28211|Alphaproteobacteria,3JQWS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	polysaccharide deacetylase	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_2245161_9	1297865.APJD01000014_gene666	3.035e-235	728.0	COG0624@1|root,COG0624@2|Bacteria,1MUSU@1224|Proteobacteria,2TV23@28211|Alphaproteobacteria,3JSS1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M28	-	-	3.4.17.11	ko:K01295	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_2245161_5	1297865.APJD01000014_gene667	1.925e-274	852.0	COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,2TVIP@28211|Alphaproteobacteria,3JVVU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	-	-	-	-	-	-	-	-	-	-	-	-	2CSK_N,HATPase_c,HisKA
SX3_k127_2245161_13	1297865.APJD01000014_gene668	5.466e-136	434.0	COG0745@1|root,COG0745@2|Bacteria,1MY5Y@1224|Proteobacteria,2VEVS@28211|Alphaproteobacteria,3JSPP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	MA20_26015	-	-	ko:K02483,ko:K07666,ko:K07774	ko02020,ko02024,map02020,map02024	M00453,M00457	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_2245161_6	1297865.APJD01000014_gene669	7.072e-253	782.0	COG0845@1|root,COG0845@2|Bacteria,1QNEF@1224|Proteobacteria,2VF10@28211|Alphaproteobacteria,3JS4I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Barrel-sandwich domain of CusB or HlyD membrane-fusion	-	-	-	-	-	-	-	-	-	-	-	-	HlyD_D23
SX3_k127_2245161_0	1297865.APJD01000014_gene670	0.0	2101.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRJE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
SX3_k127_2245161_2	1297865.APJD01000014_gene671	1.597e-319	980.0	COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2TVDE@28211|Alphaproteobacteria,3JSET@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	OEP
SX3_k127_2245161_7	1297865.APJD01000014_gene672	6.556e-248	765.0	COG4663@1|root,COG4663@2|Bacteria,1MVMD@1224|Proteobacteria,2TS4J@28211|Alphaproteobacteria,3JW51@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Part of the tripartite ATP-independent periplasmic (TRAP) transport system	-	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_2245161_8	1297865.APJD01000014_gene673	1.721e-238	739.0	COG4663@1|root,COG4663@2|Bacteria,1MVMD@1224|Proteobacteria,2TS4J@28211|Alphaproteobacteria,3JQN4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Part of the tripartite ATP-independent periplasmic (TRAP) transport system	MA20_25950	-	-	-	-	-	-	-	-	-	-	-	DctP,TAT_signal
SX3_k127_2245161_20	1297865.APJD01000014_gene674	1.72e-34	135.0	2B594@1|root,31Y37@2|Bacteria,1NF53@1224|Proteobacteria,2UICB@28211|Alphaproteobacteria,3K1IF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2245161_10	398525.KB900701_gene4227	2.225e-226	711.0	COG0489@1|root,COG0489@2|Bacteria,1MU7R@1224|Proteobacteria,2TRDM@28211|Alphaproteobacteria,3JRSI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP	mrp	-	-	ko:K03593	-	-	-	-	ko00000,ko03029,ko03036	-	-	-	FeS_assembly_P,ParA
SX3_k127_2245161_17	1297865.APJD01000014_gene676	2.19e-91	304.0	COG0346@1|root,COG0346@2|Bacteria,1N7R0@1224|Proteobacteria,2U4YP@28211|Alphaproteobacteria,3JWQ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	MA20_25940	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_2245161_11	1230476.C207_02011	1.175e-182	576.0	COG2084@1|root,COG2084@2|Bacteria,1MUGU@1224|Proteobacteria,2TT50@28211|Alphaproteobacteria,3JS5I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	MA20_25935	-	1.1.1.31,1.1.1.60	ko:K00020,ko:K00042	ko00280,ko00630,ko01100,map00280,map00630,map01100	-	R01745,R01747,R05066	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_2245161_4	1297865.APJD01000014_gene678	6.759e-306	939.0	COG1620@1|root,COG1620@2|Bacteria,1R6RM@1224|Proteobacteria,2U2C9@28211|Alphaproteobacteria,3JUSC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	L-lactate permease	-	-	-	ko:K03303	-	-	-	-	ko00000,ko02000	2.A.14	-	-	Lactate_perm
SX3_k127_2245161_3	1297865.APJD01000014_gene679	3.733e-310	955.0	COG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TUYS@28211|Alphaproteobacteria,3JRDP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	MA20_25925	-	2.7.13.3	ko:K07716	ko02020,ko04112,map02020,map04112	M00511	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA
SX3_k127_2245161_19	1230476.C207_02014	1.695e-36	138.0	COG3313@1|root,COG3313@2|Bacteria,1NGD5@1224|Proteobacteria,2UJKX@28211|Alphaproteobacteria,3K12V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1289)	-	-	-	ko:K06938	-	-	-	-	ko00000	-	-	-	DUF1289
SX3_k127_2245161_14	1297865.APJD01000014_gene681	6.121e-118	381.0	COG3577@1|root,COG3577@2|Bacteria,1MZCI@1224|Proteobacteria,2U9K2@28211|Alphaproteobacteria,3JR2R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	gag-polyprotein putative aspartyl protease	MA20_25915	-	-	ko:K06985	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	Asp_protease_2,gag-asp_proteas
SX3_k127_2245161_18	398525.KB900701_gene4221	6.469e-55	194.0	COG4829@1|root,COG4829@2|Bacteria,1MZDX@1224|Proteobacteria,2UCJ5@28211|Alphaproteobacteria,3JZFX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Muconolactone delta-isomerase	-	-	5.3.3.4	ko:K03464	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	M00568	R06990	RC01109	ko00000,ko00001,ko00002,ko01000	-	-	-	MIase
SX3_k127_2245161_1	1297865.APJD01000014_gene683	0.0	1080.0	COG2368@1|root,COG2368@2|Bacteria,1PEQG@1224|Proteobacteria,2TVQ7@28211|Alphaproteobacteria,3JWEV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	4-hydroxyphenylacetate 3-hydroxylase C terminal	-	-	1.14.14.9	ko:K00483	ko00350,ko01120,ko01220,map00350,map01120,map01220	-	R02698,R03299	RC00046	ko00000,ko00001,ko01000	-	-	-	HpaB,HpaB_N
SX3_k127_2245161_15	1297865.APJD01000014_gene684	2.09e-116	378.0	COG0196@1|root,COG0196@2|Bacteria,1RAF5@1224|Proteobacteria,2U6CX@28211|Alphaproteobacteria,3JXGR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	FAD synthetase	-	-	2.7.1.26,2.7.7.2	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00161,R00549	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_syn
SX3_k127_2245161_16	1297865.APJD01000014_gene685	2.881e-108	360.0	COG1853@1|root,COG1853@2|Bacteria,1PMEZ@1224|Proteobacteria,2TUEZ@28211|Alphaproteobacteria,3K6DV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
SX3_k127_2245161_12	1297865.APJD01000014_gene686	4.649e-165	530.0	COG3485@1|root,COG3485@2|Bacteria,1MX7W@1224|Proteobacteria,2TT8T@28211|Alphaproteobacteria,3JWT1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Catechol dioxygenase N terminus	-	-	1.13.11.1	ko:K03381	ko00361,ko00362,ko00364,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00364,map00623,map01100,map01120,map01220	M00568	R00817,R04258,R05299,R08114,R08115,R09134	RC00388,RC00535,RC01366	ko00000,ko00001,ko00002,ko01000	-	-	-	Dioxygenase_C,Dioxygenase_N
SX3_k127_2251987_4	1297865.APJD01000007_gene1933	9.621e-178	557.0	COG0617@1|root,COG0617@2|Bacteria,1MVCS@1224|Proteobacteria,2TRPZ@28211|Alphaproteobacteria,3JR2K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Poly A polymerase head domain	pcnB	-	2.7.7.19,2.7.7.72	ko:K00970,ko:K00974	ko03013,ko03018,map03013,map03018	-	R09382,R09383,R09384,R09386	RC00078	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	PolyA_pol,PolyA_pol_RNAbd
SX3_k127_2251987_7	1297865.APJD01000007_gene1932	4.465e-45	166.0	2CETE@1|root,32ZH4@2|Bacteria,1N1NH@1224|Proteobacteria,2UBYE@28211|Alphaproteobacteria,3K03U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2251987_5	1297865.APJD01000007_gene1931	2.768e-145	462.0	COG0494@1|root,COG0494@2|Bacteria,1RD2C@1224|Proteobacteria,2TV3Q@28211|Alphaproteobacteria,3JU9N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	NUDIX domain	MA20_44635	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_2251987_6	1297865.APJD01000007_gene1930	4.739e-140	446.0	COG3816@1|root,COG3816@2|Bacteria,1RD5Q@1224|Proteobacteria,2U7DA@28211|Alphaproteobacteria,3JSDP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1285)	MA20_44640	-	-	ko:K09986	-	-	-	-	ko00000	-	-	-	DUF1285
SX3_k127_2251987_2	1297865.APJD01000007_gene1929	1.315e-206	644.0	COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,2TR0T@28211|Alphaproteobacteria,3JTNE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ATPase family associated with various cellular activities (AAA)	moxR	GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944	-	ko:K03924	-	-	-	-	ko00000,ko01000	-	-	-	AAA_3
SX3_k127_2251987_3	1297865.APJD01000007_gene1928	1.866e-197	626.0	COG1721@1|root,COG1721@2|Bacteria,1MWPG@1224|Proteobacteria,2TTDX@28211|Alphaproteobacteria,3JRDG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function DUF58	MA20_44650	-	-	-	-	-	-	-	-	-	-	-	DUF58
SX3_k127_2251987_0	1297865.APJD01000007_gene1927	0.0	1868.0	28H8H@1|root,2Z7KE@2|Bacteria,1MV77@1224|Proteobacteria,2TSVV@28211|Alphaproteobacteria,3JRNZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aerotolerance regulator N-terminal	MA20_44655	-	-	-	-	-	-	-	-	-	-	-	BatA,DUF4159
SX3_k127_2251987_1	1297865.APJD01000007_gene1926	1.01e-293	902.0	COG5426@1|root,COG5426@2|Bacteria,1MVWA@1224|Proteobacteria,2TQNQ@28211|Alphaproteobacteria,3JRQR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	membrane	MA20_44660	-	-	-	-	-	-	-	-	-	-	-	GATase1_like
SX3_k127_22569_0	1297865.APJD01000009_gene2789	0.0	2025.0	COG0458@1|root,COG0458@2|Bacteria,1MUDZ@1224|Proteobacteria,2TQZU@28211|Alphaproteobacteria,3JTPJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the CarB family	carB	-	6.3.5.5	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000	-	-	-	CPSase_L_D2,CPSase_L_D3,MGS
SX3_k127_22569_3	224911.27355657	4.854e-153	497.0	COG0783@1|root,COG0783@2|Bacteria,1RAC5@1224|Proteobacteria,2U5Q5@28211|Alphaproteobacteria,3JQT2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the Dps family	MA20_05010	-	-	ko:K04047	-	-	-	-	ko00000,ko03036	-	-	-	Ferritin
SX3_k127_22569_5	1297865.APJD01000009_gene2786	3.526e-118	380.0	COG4297@1|root,COG4297@2|Bacteria,1RB1W@1224|Proteobacteria,2U14J@28211|Alphaproteobacteria,3JY1Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	protein containing double-stranded beta helix domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_1,Cupin_2,Cupin_6
SX3_k127_22569_6	1297865.APJD01000009_gene2785	1.103e-102	334.0	COG2050@1|root,COG2050@2|Bacteria,1RK46@1224|Proteobacteria,2U9U1@28211|Alphaproteobacteria,3JYKR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_22569_2	1230476.C207_03570	3.995e-265	816.0	COG0505@1|root,COG0505@2|Bacteria,1MUB9@1224|Proteobacteria,2TR3W@28211|Alphaproteobacteria,3JU8E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the CarA family	carA	GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0019627,GO:0019752,GO:0032991,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494	6.3.5.5	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000	-	-	-	CPSase_sm_chain,GATase
SX3_k127_22569_4	1297865.APJD01000009_gene2783	2.326e-152	481.0	COG2267@1|root,COG2267@2|Bacteria,1QUZX@1224|Proteobacteria,2TWE4@28211|Alphaproteobacteria,3JTRZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Thioesterase domain	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_22569_8	1297865.APJD01000009_gene2782	4.107e-84	280.0	COG1610@1|root,COG1610@2|Bacteria,1RGZS@1224|Proteobacteria,2U7DJ@28211|Alphaproteobacteria,3JYDG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Yqey-like protein	MA20_04985	-	-	ko:K09117	-	-	-	-	ko00000	-	-	-	YqeY
SX3_k127_22569_7	1297865.APJD01000009_gene2781	6.69e-96	314.0	29WQH@1|root,30IBF@2|Bacteria,1RAMH@1224|Proteobacteria,2U6X4@28211|Alphaproteobacteria,3JYNR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_22569_1	1297865.APJD01000009_gene2780	0.0	1112.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TRII@28211|Alphaproteobacteria,3JU9D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	AMP-binding enzyme C-terminal domain	MA20_04975	-	6.2.1.1	ko:K01895	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_2277939_29	1230476.C207_03847	8.87e-14	73.0	2BG00@1|root,329VZ@2|Bacteria,1NJ1K@1224|Proteobacteria,2UMGQ@28211|Alphaproteobacteria,3K22P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2277939_28	1230476.C207_03848	1.423e-14	75.0	29ZWS@1|root,30MY5@2|Bacteria,1P9KN@1224|Proteobacteria,2UX24@28211|Alphaproteobacteria,3K5M3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2277939_19	1297865.APJD01000033_gene6966	1.085e-75	256.0	2AF7X@1|root,31570@2|Bacteria,1RFGV@1224|Proteobacteria,2U722@28211|Alphaproteobacteria,3JYUG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2277939_2	1297865.APJD01000033_gene6967	0.0	1077.0	COG1032@1|root,COG1032@2|Bacteria,1MWR0@1224|Proteobacteria,2TUPK@28211|Alphaproteobacteria,3JVM0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit	bchE	-	1.21.98.3	ko:K04034	ko00860,ko01100,ko01110,map00860,map01100,map01110	-	R06268,R06269,R06270	RC00741,RC01491,RC01492	ko00000,ko00001,ko01000	-	-	-	B12-binding,Radical_SAM
SX3_k127_2277939_10	1297865.APJD01000033_gene6968	8.586e-154	486.0	COG0020@1|root,COG0020@2|Bacteria,1MVP1@1224|Proteobacteria,2TU0N@28211|Alphaproteobacteria,3JT02@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids	MA20_23565	GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617	2.5.1.31	ko:K00806	ko00900,ko01110,map00900,map01110	-	R06447	RC00279,RC02839	ko00000,ko00001,ko01000,ko01006	-	-	-	Prenyltransf
SX3_k127_2277939_24	1187851.A33M_1874	1.848e-50	183.0	COG0640@1|root,COG0640@2|Bacteria,1R9XP@1224|Proteobacteria,2U5PE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Winged helix DNA-binding domain	MA20_23570	-	-	-	-	-	-	-	-	-	-	-	HTH_34
SX3_k127_2277939_14	1297865.APJD01000033_gene6970	3.431e-126	406.0	2BACU@1|root,323T9@2|Bacteria,1R49S@1224|Proteobacteria,2TSC0@28211|Alphaproteobacteria,3JTIY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2277939_21	1297865.APJD01000033_gene6971	1.185e-72	248.0	COG5507@1|root,COG5507@2|Bacteria,1RHC1@1224|Proteobacteria,2UC7A@28211|Alphaproteobacteria,3JYUE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1428)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1428
SX3_k127_2277939_9	1297865.APJD01000033_gene6972	8.303e-166	521.0	COG4312@1|root,COG4312@2|Bacteria,1NAXN@1224|Proteobacteria,2U16Z@28211|Alphaproteobacteria,3JU8V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF899)	-	-	-	-	-	-	-	-	-	-	-	-	DUF899
SX3_k127_2277939_20	1297865.APJD01000033_gene6973	4.331e-73	254.0	COG3832@1|root,COG3832@2|Bacteria,1RI3S@1224|Proteobacteria,2UB60@28211|Alphaproteobacteria,3JXJH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_2277939_17	1297865.APJD01000033_gene6974	7.249e-97	317.0	COG0640@1|root,COG0640@2|Bacteria,1RH5P@1224|Proteobacteria,2U960@28211|Alphaproteobacteria,3JYB5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
SX3_k127_2277939_25	1297865.APJD01000033_gene6975	2.22e-50	180.0	2AITW@1|root,319AY@2|Bacteria,1N4RI@1224|Proteobacteria,2UDG0@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3551)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3551
SX3_k127_2277939_6	1297865.APJD01000033_gene6976	1.006e-207	649.0	COG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria,3JTZB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	MA20_23605	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_2277939_18	1297865.APJD01000033_gene6977	2.878e-86	291.0	COG0346@1|root,COG0346@2|Bacteria,1RH3J@1224|Proteobacteria,2U9J3@28211|Alphaproteobacteria,3JY2B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	4.4.1.5	ko:K01759	ko00620,map00620	-	R02530	RC00004,RC00740	ko00000,ko00001,ko01000	-	-	-	Glyoxalase
SX3_k127_2277939_1	1297865.APJD01000033_gene6978	0.0	1080.0	COG0318@1|root,COG0318@2|Bacteria,1MWF2@1224|Proteobacteria,2TU4I@28211|Alphaproteobacteria,3JR3C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.48	ko:K02182	-	-	-	-	ko00000,ko01000	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_2277939_4	1297865.APJD01000033_gene6979	7.054e-289	888.0	COG2124@1|root,COG2124@2|Bacteria,1MV8Q@1224|Proteobacteria,2TU15@28211|Alphaproteobacteria,3JWC9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_2277939_5	398525.KB900701_gene1350	7.265e-233	722.0	COG3437@1|root,COG3437@2|Bacteria,1QW6V@1224|Proteobacteria,2TWQE@28211|Alphaproteobacteria,3JUGM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	HD domain	MA20_23615	-	-	-	-	-	-	-	-	-	-	-	HD,HD_5,Response_reg
SX3_k127_2277939_7	1297865.APJD01000033_gene6981	1.286e-199	623.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2TRAK@28211|Alphaproteobacteria,3K308@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2277939_15	1297865.APJD01000033_gene6982	2.28e-116	378.0	2FFF5@1|root,347CP@2|Bacteria,1NC5S@1224|Proteobacteria,2UPKY@28211|Alphaproteobacteria,3K2DT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2277939_0	1297865.APJD01000033_gene6983	0.0	1496.0	COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,2TQVK@28211|Alphaproteobacteria,3JUKM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.3.99.16	ko:K00256	-	-	-	-	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_2277939_16	1230476.C207_03866	6.783e-101	329.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U6Z6@28211|Alphaproteobacteria,3JR0E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.3.99.16	ko:K00256,ko:K07302	-	-	-	-	ko00000,ko01000	-	-	-	Fer2,Fer2_2
SX3_k127_2277939_8	1297865.APJD01000033_gene6985	2.944e-170	534.0	COG0596@1|root,COG0596@2|Bacteria,1Q4C8@1224|Proteobacteria,2TTW5@28211|Alphaproteobacteria,3JTEC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	MA20_23630	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_2277939_22	1297865.APJD01000033_gene6986	9.481e-68	231.0	293I8@1|root,2ZR0B@2|Bacteria,1N2RQ@1224|Proteobacteria,2UC1W@28211|Alphaproteobacteria,3K0QX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2277939_30	224911.27348412	3.884e-06	52.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2277939_11	1297865.APJD01000033_gene6987	4.94e-146	462.0	COG0412@1|root,COG0412@2|Bacteria,1MW7S@1224|Proteobacteria,2TTPH@28211|Alphaproteobacteria,3JRDU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Dienelactone hydrolase family	MA20_23640	-	3.1.1.45	ko:K01061	ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130	-	R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222	RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686	ko00000,ko00001,ko01000	-	-	-	DLH
SX3_k127_2277939_13	1230476.C207_03870	5.523e-141	449.0	COG1596@1|root,COG1596@2|Bacteria,1MXYS@1224|Proteobacteria,2U93S@28211|Alphaproteobacteria,3JTS2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Polysaccharide biosynthesis/export protein	gumB	-	-	ko:K01991	ko02026,map02026	-	-	-	ko00000,ko00001,ko02000	1.B.18	-	-	Poly_export,SLBB
SX3_k127_2277939_12	1297865.APJD01000033_gene6989	1.592e-142	460.0	COG0225@1|root,COG0225@2|Bacteria,1MVUS@1224|Proteobacteria,2TSAM@28211|Alphaproteobacteria,3JV0Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	msrA	-	1.8.4.11	ko:K07304	-	-	-	-	ko00000,ko01000	-	-	-	PMSR
SX3_k127_2277939_23	1297865.APJD01000033_gene6990	2.265e-61	211.0	2EH7Y@1|root,33AZT@2|Bacteria,1RHZF@1224|Proteobacteria,2U9CY@28211|Alphaproteobacteria,3JZUY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_23660	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2277939_26	1297865.APJD01000033_gene6991	5.977e-42	156.0	COG0268@1|root,COG0268@2|Bacteria,1MZ94@1224|Proteobacteria,2UC42@28211|Alphaproteobacteria,3K06W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds directly to 16S ribosomal RNA	rpsT	-	-	ko:K02968	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S20p
SX3_k127_2277939_3	1230476.C207_03874	3.603e-306	943.0	COG0593@1|root,COG0593@2|Bacteria,1MU5H@1224|Proteobacteria,2TT03@28211|Alphaproteobacteria,3JSPI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	dnaA	GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837	-	ko:K02313	ko02020,ko04112,map02020,map04112	-	-	-	ko00000,ko00001,ko03032,ko03036	-	-	-	Bac_DnaA,Bac_DnaA_C,DnaA_N
SX3_k127_2277939_27	1297863.APJF01000016_gene4212	1.38e-28	116.0	COG0592@1|root,COG0592@2|Bacteria,1MVD9@1224|Proteobacteria,2TSRZ@28211|Alphaproteobacteria,3JUE8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	dnaN	-	2.7.7.7	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3
SX3_k127_230269_12	1297865.APJD01000007_gene2010	1.2e-55	199.0	2BS0Z@1|root,32M1I@2|Bacteria,1R5YE@1224|Proteobacteria,2U3WF@28211|Alphaproteobacteria,3JWIW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_230269_5	398525.KB900701_gene7214	7.412e-94	310.0	COG3468@1|root,COG3468@2|Bacteria,1QW78@1224|Proteobacteria,2U7B9@28211|Alphaproteobacteria,3JYMQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Collagen triple helix repeat (20 copies)	-	-	-	-	-	-	-	-	-	-	-	-	Collagen
SX3_k127_230269_15	1297865.APJD01000007_gene2008	1.3e-45	166.0	2CAD8@1|root,2ZZE5@2|Bacteria,1N02Q@1224|Proteobacteria,2UCCB@28211|Alphaproteobacteria,3K08E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_230269_14	172088.AUGA01000059_gene4260	2.94e-51	183.0	COG5552@1|root,COG5552@2|Bacteria,1MZBV@1224|Proteobacteria,2UC5C@28211|Alphaproteobacteria,3JZF4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized conserved protein (DUF2277)	MA20_01405	-	-	-	-	-	-	-	-	-	-	-	DUF2277
SX3_k127_230269_16	1297865.APJD01000007_gene2006	3.515e-44	169.0	2EA3Y@1|root,3348X@2|Bacteria,1N7DC@1224|Proteobacteria,2UF9X@28211|Alphaproteobacteria,3K0PP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2188)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2188
SX3_k127_230269_1	1297865.APJD01000007_gene2005	9.024e-141	449.0	COG0640@1|root,COG0640@2|Bacteria,1PRJW@1224|Proteobacteria,2TWA5@28211|Alphaproteobacteria,3JXNA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
SX3_k127_230269_6	1297865.APJD01000007_gene2004	4.282e-83	282.0	COG3631@1|root,COG3631@2|Bacteria,1N3QE@1224|Proteobacteria,2U6C7@28211|Alphaproteobacteria,3JZ1S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
SX3_k127_230269_0	1297865.APJD01000007_gene2003	4.16e-235	728.0	COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,2TTTV@28211|Alphaproteobacteria,3JUHB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Alpha/beta hydrolase family	-	-	2.3.1.31	ko:K00641	ko00270,ko01100,ko01130,map00270,map01100,map01130	-	R01776	RC00004,RC00041	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
SX3_k127_230269_2	1230476.C207_00401	7.475e-111	365.0	2BQF2@1|root,32JAF@2|Bacteria,1NRX6@1224|Proteobacteria,2UNZZ@28211|Alphaproteobacteria,3K36G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_230269_4	1297865.APJD01000007_gene2001	6.354e-103	336.0	2BT67@1|root,32NB8@2|Bacteria,1NTSX@1224|Proteobacteria,2UR68@28211|Alphaproteobacteria,3K2SR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_230269_10	1297865.APJD01000007_gene2000	1.029e-70	239.0	COG3801@1|root,COG3801@2|Bacteria,1REJV@1224|Proteobacteria,2U8BB@28211|Alphaproteobacteria,3JYZ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YjbR	-	-	-	-	-	-	-	-	-	-	-	-	YjbR
SX3_k127_230269_8	1297865.APJD01000007_gene1999	2.51e-75	261.0	2BTFY@1|root,32NN7@2|Bacteria,1RDK7@1224|Proteobacteria,2U7B8@28211|Alphaproteobacteria,3JYUD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_01390	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_230269_11	1245469.S58_18870	1.284e-66	229.0	COG4270@1|root,COG4270@2|Bacteria,1N1BK@1224|Proteobacteria,2UD4E@28211|Alphaproteobacteria,3JZED@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DoxX-like family	-	-	-	-	-	-	-	-	-	-	-	-	DoxX_2
SX3_k127_230269_7	1230476.C207_00398	1.633e-78	264.0	29CUQ@1|root,2ZZSV@2|Bacteria,1N1EJ@1224|Proteobacteria,2UE14@28211|Alphaproteobacteria,3K0KF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_230269_3	1297865.APJD01000007_gene1997	1.558e-106	346.0	COG2193@1|root,COG2193@2|Bacteria,1RCW7@1224|Proteobacteria,2U70I@28211|Alphaproteobacteria,3JS15@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex	bfr	-	1.16.3.1	ko:K03594	ko00860,map00860	-	R00078	RC02758	ko00000,ko00001,ko01000	-	-	-	Ferritin
SX3_k127_230269_9	1230476.C207_00396	2.08e-74	250.0	COG2906@1|root,COG2906@2|Bacteria,1RIF5@1224|Proteobacteria,2UC4X@28211|Alphaproteobacteria,3JZNV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	BFD domain protein 2Fe-2S -binding domain protein	MA20_01365	-	-	-	-	-	-	-	-	-	-	-	Fer2_BFD
SX3_k127_230269_13	1297865.APJD01000007_gene1995	7.237e-55	197.0	2EB58@1|root,3355X@2|Bacteria,1RGB3@1224|Proteobacteria,2U9WS@28211|Alphaproteobacteria,3JZPT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2305201_3	1040983.AXAE01000018_gene5947	1.145e-234	730.0	COG0210@1|root,COG0210@2|Bacteria,1MXKP@1224|Proteobacteria,2TUJK@28211|Alphaproteobacteria,43MIP@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	UvrD/REP helicase N-terminal domain	-	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	AAA_19,UvrD-helicase,UvrD_C_2
SX3_k127_2305201_2	1297865.APJD01000027_gene5786	0.0	1122.0	COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,2TXGZ@28211|Alphaproteobacteria,3JT26@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	UvrD-like helicase C-terminal domain	-	-	3.1.11.5,3.1.12.1	ko:K01144,ko:K07464	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PDDEXK_1,UvrD-helicase,UvrD_C
SX3_k127_2305201_4	491916.RHECIAT_PC0000865	2.649e-173	559.0	COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,2TXGZ@28211|Alphaproteobacteria,4BI7C@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	UvrD/REP helicase N-terminal domain	-	-	3.1.12.1	ko:K07464	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PDDEXK_1,UvrD-helicase,UvrD_C
SX3_k127_2305201_1	491916.RHECIAT_PC0000866	0.0	1274.0	COG2887@1|root,COG2887@2|Bacteria,1R5HY@1224|Proteobacteria,2TUP4@28211|Alphaproteobacteria,4BC5B@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	PD-(D/E)XK nuclease superfamily	-	-	-	-	-	-	-	-	-	-	-	-	PDDEXK_1
SX3_k127_2305201_0	1297865.APJD01000040_gene2678	0.0	1364.0	COG1404@1|root,COG1404@2|Bacteria,1ND93@1224|Proteobacteria,2U0FT@28211|Alphaproteobacteria,3JVB3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Subtilase family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S8
SX3_k127_2307544_10	1297865.APJD01000023_gene1050	1.016e-61	213.0	COG0583@1|root,COG0583@2|Bacteria,1MXR1@1224|Proteobacteria,2TRA1@28211|Alphaproteobacteria,3JSTX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR family	MA20_04505	-	-	ko:K19338	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_2307544_7	1297865.APJD01000023_gene1049	3.551e-119	385.0	COG0028@1|root,COG0028@2|Bacteria,1R6QP@1224|Proteobacteria,2TXAJ@28211|Alphaproteobacteria,3JUDG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	-	-	-	-	-	-	-	-	-	-	-	-	TPP_enzyme_C
SX3_k127_2307544_8	1297865.APJD01000023_gene1048	5.512e-117	378.0	COG4032@1|root,COG4032@2|Bacteria,1P0HU@1224|Proteobacteria,2TRJ2@28211|Alphaproteobacteria,3JQMU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	-	-	4.1.1.79	ko:K06034	ko00680,ko01120,map00680,map01120	M00358	R05774	RC00506	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_N
SX3_k127_2307544_0	1297865.APJD01000023_gene1047	0.0	1203.0	COG2227@1|root,COG2227@2|Bacteria,1QW6H@1224|Proteobacteria,2TRBZ@28211|Alphaproteobacteria,3JT4B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_12,Methyltransf_25,Methyltransf_31,TPR_2,TPR_8
SX3_k127_2307544_2	1297865.APJD01000023_gene1045	1.884e-290	893.0	COG2124@1|root,COG2124@2|Bacteria,1MV8Q@1224|Proteobacteria,2TRWW@28211|Alphaproteobacteria,3JR28@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	MA20_04500	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_2307544_3	1297865.APJD01000023_gene1044	7.859e-289	887.0	COG2124@1|root,COG2124@2|Bacteria,1MV8Q@1224|Proteobacteria,2TRWW@28211|Alphaproteobacteria,3JU2D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Belongs to the cytochrome P450 family	MA20_04495	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_2307544_11	172088.AUGA01000012_gene7139	4.782e-60	209.0	2BT0E@1|root,32N4G@2|Bacteria,1N1Z0@1224|Proteobacteria,2UEC1@28211|Alphaproteobacteria,3K0DE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2307544_4	1297865.APJD01000023_gene1042	3.956e-250	772.0	COG4269@1|root,COG4269@2|Bacteria,1MW5P@1224|Proteobacteria,2U0EV@28211|Alphaproteobacteria,3JUFQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF898)	-	-	-	-	-	-	-	-	-	-	-	-	DUF898
SX3_k127_2307544_5	1297865.APJD01000023_gene1041	3.626e-233	725.0	COG0501@1|root,COG0501@2|Bacteria,1NK9F@1224|Proteobacteria,2TREZ@28211|Alphaproteobacteria,3JTBI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Peptidase family M48	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M48
SX3_k127_2307544_12	1297865.APJD01000023_gene1040	2.053e-52	192.0	2EGBE@1|root,33A39@2|Bacteria,1N3MX@1224|Proteobacteria,2UE26@28211|Alphaproteobacteria,3K0D7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2307544_13	709797.CSIRO_2738	3.043e-37	156.0	2DNWF@1|root,32ZII@2|Bacteria,1N9W1@1224|Proteobacteria,2UE3K@28211|Alphaproteobacteria,3K093@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2307544_6	1297865.APJD01000023_gene1039	5.487e-168	532.0	COG0693@1|root,COG0693@2|Bacteria,1N8N6@1224|Proteobacteria,2TT0U@28211|Alphaproteobacteria,3JV78@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DJ-1/PfpI family	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI
SX3_k127_2307544_1	1297865.APJD01000023_gene1038	0.0	1064.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JTUB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_2310714_6	398525.KB900701_gene335	2.212e-17	81.0	COG3288@1|root,COG3288@2|Bacteria,1MVXU@1224|Proteobacteria,2TSZN@28211|Alphaproteobacteria,3JU1M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Alanine dehydrogenase/PNT, C-terminal domain	pntAA	GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600	1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	AlaDh_PNT_C,AlaDh_PNT_N
SX3_k127_2310714_4	1380355.JNIJ01000031_gene3472	4.185e-106	348.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TR61@28211|Alphaproteobacteria,3JQRS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	livF	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_2310714_3	1297865.APJD01000052_gene1189	2.529e-161	528.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TQK1@28211|Alphaproteobacteria,3JVWU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	livG	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_2310714_1	1297865.APJD01000052_gene1190	2.336e-209	670.0	COG4177@1|root,COG4177@2|Bacteria,1MXPG@1224|Proteobacteria,2TUH2@28211|Alphaproteobacteria,3JWPR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_2310714_2	1297865.APJD01000052_gene1191	1.342e-173	548.0	COG0559@1|root,COG0559@2|Bacteria,1QDNH@1224|Proteobacteria,2U1CJ@28211|Alphaproteobacteria,3JRUY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_2310714_0	1297865.APJD01000052_gene1192	3.092e-235	731.0	COG0683@1|root,COG0683@2|Bacteria,1NNXR@1224|Proteobacteria,2VEZD@28211|Alphaproteobacteria,3K6E7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_231272_12	1297865.APJD01000004_gene5395	4.225e-139	445.0	COG1296@1|root,COG1296@2|Bacteria,1MVGN@1224|Proteobacteria,2TVIA@28211|Alphaproteobacteria,3K6IJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	AzlC protein	azlC	-	-	-	-	-	-	-	-	-	-	-	AzlC
SX3_k127_231272_14	1230476.C207_02648	6.227e-46	167.0	2AK9G@1|root,31AZV@2|Bacteria,1NXZ4@1224|Proteobacteria,2UT2W@28211|Alphaproteobacteria,3K4AW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_231272_16	1297865.APJD01000004_gene5393	5.502e-28	128.0	2BH7W@1|root,32B95@2|Bacteria,1NAB1@1224|Proteobacteria,2UG4T@28211|Alphaproteobacteria,3K0ZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_20715	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_231272_8	1297865.APJD01000004_gene5392	7.771e-193	601.0	COG0583@1|root,COG0583@2|Bacteria,1MV06@1224|Proteobacteria,2TT94@28211|Alphaproteobacteria,3JUDB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_231272_11	398525.KB900701_gene2445	1.237e-143	458.0	COG1028@1|root,COG1028@2|Bacteria,1MU73@1224|Proteobacteria,2TV6T@28211|Alphaproteobacteria,3JU3Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_231272_10	1297865.APJD01000004_gene5390	1.602e-187	590.0	COG1028@1|root,COG1028@2|Bacteria,1PTQR@1224|Proteobacteria,2TQN4@28211|Alphaproteobacteria,3JTBN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	NAD dependent epimerase/dehydratase family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_231272_1	1297865.APJD01000004_gene5389	4.504e-241	745.0	COG0400@1|root,COG0400@2|Bacteria,1P51S@1224|Proteobacteria,2TT0Y@28211|Alphaproteobacteria,3JU1C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PFAM phospholipase Carboxylesterase	-	-	-	ko:K06999	-	-	-	-	ko00000	-	-	-	Abhydrolase_2
SX3_k127_231272_4	1297865.APJD01000004_gene5388	3.377e-212	660.0	COG0265@1|root,COG0265@2|Bacteria,1MURF@1224|Proteobacteria,2TUVW@28211|Alphaproteobacteria,3JT2K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Domain present in PSD-95, Dlg, and ZO-1/2.	MA20_20705	-	-	-	-	-	-	-	-	-	-	-	PDZ_2,Trypsin_2
SX3_k127_231272_0	1297865.APJD01000004_gene5387	0.0	1058.0	COG0318@1|root,COG0318@2|Bacteria,1MUIC@1224|Proteobacteria,2TUFX@28211|Alphaproteobacteria,3JSU3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_40105	-	6.2.1.7	ko:K15868	ko00121,map00121	-	-	-	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_231272_13	1297865.APJD01000004_gene5386	1.601e-62	215.0	29CEH@1|root,316CX@2|Bacteria,1RK1P@1224|Proteobacteria,2UAFP@28211|Alphaproteobacteria,3JZN2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PilZ domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_231272_15	1297865.APJD01000004_gene5385	2.807e-41	154.0	29G1G@1|root,302Z9@2|Bacteria,1P7JP@1224|Proteobacteria,2UX1U@28211|Alphaproteobacteria,3K56V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_231272_9	1297865.APJD01000004_gene5384	1.202e-189	592.0	COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2TUNU@28211|Alphaproteobacteria,3JUG2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_231272_5	1297865.APJD01000004_gene5383	1.714e-209	653.0	COG0667@1|root,COG0667@2|Bacteria,1MVEH@1224|Proteobacteria,2TRHS@28211|Alphaproteobacteria,3JVP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldo keto reductase	-	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
SX3_k127_231272_6	1297865.APJD01000004_gene5382	1.541e-203	637.0	COG1360@1|root,COG1360@2|Bacteria,1MU4S@1224|Proteobacteria,2TQKZ@28211|Alphaproteobacteria,3JQX8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	OmpA family	MA20_18060	-	-	ko:K02557	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02000,ko02035	1.A.30.1	-	-	OmpA
SX3_k127_231272_7	1297865.APJD01000004_gene5381	2.511e-197	616.0	COG1511@1|root,COG1511@2|Bacteria,1NYJB@1224|Proteobacteria,2TSX0@28211|Alphaproteobacteria,3JQXZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MotA TolQ ExbB proton channel family	MA20_18055	-	-	-	-	-	-	-	-	-	-	-	MotA_ExbB
SX3_k127_231272_2	1297865.APJD01000004_gene5380	2.007e-236	736.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,2TSW4@28211|Alphaproteobacteria,3JRWE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	MA20_18045	-	-	ko:K03585	ko01501,ko01503,map01501,map01503	M00646,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	2.A.6.2,8.A.1.6	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_231272_3	1297865.APJD01000004_gene5379	1.41e-213	664.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JS7F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Efflux pump membrane transporter	MA20_18040	-	-	ko:K18138,ko:K18146	ko01501,ko01503,map01501,map01503	M00647,M00649,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2,2.A.6.2.40	-	-	ACR_tran
SX3_k127_231297_0	1297865.APJD01000026_gene2401	3.118e-230	717.0	COG0809@1|root,COG0809@2|Bacteria,1MUH3@1224|Proteobacteria,2TS0D@28211|Alphaproteobacteria,3JUTD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)	queA	GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.4.99.17	ko:K07568	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Queuosine_synth
SX3_k127_231297_3	1297865.APJD01000026_gene2400	1.559e-95	316.0	COG0652@1|root,COG0652@2|Bacteria,1R9ZQ@1224|Proteobacteria,2U591@28211|Alphaproteobacteria,3JR75@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	ppiB	-	5.2.1.8	ko:K01802,ko:K09565	ko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145	-	-	-	ko00000,ko00001,ko01000,ko03110	-	-	-	Pro_isomerase
SX3_k127_231297_4	189753.AXAS01000060_gene8339	1.603e-46	171.0	2E5B6@1|root,3303A@2|Bacteria,1RDY2@1224|Proteobacteria,2TVMZ@28211|Alphaproteobacteria,3JY82@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_231297_1	1297865.APJD01000026_gene2398	1.384e-114	371.0	COG0652@1|root,COG0652@2|Bacteria,1R9ZQ@1224|Proteobacteria,2U591@28211|Alphaproteobacteria,3JSVU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	ppiA	-	5.2.1.8	ko:K01802,ko:K03767,ko:K03768,ko:K09565	ko01503,ko04020,ko04022,ko04217,ko05012,ko05016,ko05145,map01503,map04020,map04022,map04217,map05012,map05016,map05145	-	-	-	ko00000,ko00001,ko01000,ko03110,ko04147	-	-	-	Pro_isomerase
SX3_k127_231297_2	1297865.APJD01000026_gene2397	2.474e-96	315.0	COG0669@1|root,COG0669@2|Bacteria,1RD9F@1224|Proteobacteria,2U74H@28211|Alphaproteobacteria,3JV4W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate	coaD	-	2.7.7.3	ko:K00954	ko00770,ko01100,map00770,map01100	M00120	R03035	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_like
SX3_k127_2316860_0	1297865.APJD01000014_gene839	9.107e-145	460.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2TQT8@28211|Alphaproteobacteria,3JTRW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	pcpB	-	1.14.13.127,1.14.13.50	ko:K03391,ko:K05712	ko00360,ko00361,ko00364,ko01100,ko01120,ko01220,map00360,map00361,map00364,map01100,map01120,map01220	M00545	R03982,R06786,R06787,R07779	RC00236,RC01932	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_2316860_3	1297865.APJD01000014_gene840	3.965e-131	421.0	28I3D@1|root,2Z876@2|Bacteria,1P0DR@1224|Proteobacteria,2TTG2@28211|Alphaproteobacteria,3JUSV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PilZ domain	MA20_31715	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_2316860_1	1230476.C207_00529	8.664e-134	427.0	COG3672@1|root,COG3672@2|Bacteria,1NUXW@1224|Proteobacteria,2TTXC@28211|Alphaproteobacteria,3JV82@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial transglutaminase-like cysteine proteinase BTLCP	MA20_31720	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C93
SX3_k127_2316860_6	1297865.APJD01000014_gene842	7.123e-78	265.0	2C4SR@1|root,32TC7@2|Bacteria,1RCZG@1224|Proteobacteria,2U89H@28211|Alphaproteobacteria,3JZY4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2316860_2	1297865.APJD01000014_gene843	1.226e-132	423.0	COG1309@1|root,COG1309@2|Bacteria,1R9PS@1224|Proteobacteria,2U57B@28211|Alphaproteobacteria,3JSK2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_2316860_4	1297865.APJD01000014_gene844	1.077e-120	387.0	COG0764@1|root,COG0764@2|Bacteria,1MWV8@1224|Proteobacteria,2TV8S@28211|Alphaproteobacteria,3JSAZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl- ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)- decenoyl-ACP. Can catalyze the dehydratase reaction for beta- hydroxyacyl-ACPs with saturated chain lengths up to 16 0, being most active on intermediate chain length	fabA	-	4.2.1.59,5.3.3.14	ko:K01716	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00083	R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07639	RC00831,RC01078,RC01095	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FabA
SX3_k127_2316860_5	1297865.APJD01000014_gene845	2.769e-85	287.0	2A5MV@1|root,30UCK@2|Bacteria,1Q2SB@1224|Proteobacteria,2U27I@28211|Alphaproteobacteria,3JTKN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2316860_7	1230476.C207_00534	4.479e-13	70.0	2A0XX@1|root,30P32@2|Bacteria,1P9Y4@1224|Proteobacteria,2UXQY@28211|Alphaproteobacteria,3K5MK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2322712_3	1297865.APJD01000019_gene3171	1.025e-106	349.0	COG3569@1|root,COG3569@2|Bacteria,1MVJ9@1224|Proteobacteria,2TUAH@28211|Alphaproteobacteria,3JRZQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Eukaryotic DNA topoisomerase I, catalytic core	MA20_25110	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	Topoisom_I
SX3_k127_2322712_5	1297865.APJD01000019_gene3170	5.163e-98	323.0	COG3184@1|root,COG3184@2|Bacteria,1R7P9@1224|Proteobacteria,2U0WB@28211|Alphaproteobacteria,3JXER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2059)	-	-	-	ko:K09924	-	-	-	-	ko00000	-	-	-	DUF2059
SX3_k127_2322712_0	1297865.APJD01000019_gene3169	0.0	1379.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TRKS@28211|Alphaproteobacteria,3JSWQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA	acsA	-	6.2.1.1	ko:K01895	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
SX3_k127_2322712_4	1297865.APJD01000019_gene3168	6.247e-104	344.0	COG1376@1|root,COG1376@2|Bacteria,1MVYT@1224|Proteobacteria,2U7F8@28211|Alphaproteobacteria,3JTDU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	MA20_25100	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_2322712_6	1297865.APJD01000019_gene3167	8.649e-32	132.0	2DFWR@1|root,2ZTH7@2|Bacteria,1NN42@1224|Proteobacteria,2UJCW@28211|Alphaproteobacteria,3K253@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2322712_1	1297865.APJD01000019_gene3166	4.459e-249	770.0	COG3182@1|root,COG3182@2|Bacteria,1MW2S@1224|Proteobacteria,2TSFC@28211|Alphaproteobacteria,3JW59@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
SX3_k127_2322712_2	1297865.APJD01000019_gene3165	6.164e-208	646.0	COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2TVX5@28211|Alphaproteobacteria,3K6QH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_2327708_5	1297865.APJD01000007_gene2357	2.378e-110	357.0	COG0697@1|root,COG0697@2|Bacteria,1MXVF@1224|Proteobacteria,2TU7N@28211|Alphaproteobacteria,3JUZ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_2327708_0	1297865.APJD01000007_gene2358	0.0	2780.0	COG3210@1|root,COG4625@1|root,COG3210@2|Bacteria,COG4625@2|Bacteria,1MU92@1224|Proteobacteria,2TSB7@28211|Alphaproteobacteria,3JUBZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,PATR
SX3_k127_2327708_1	1297865.APJD01000007_gene2359	2.812e-234	726.0	COG1063@1|root,COG1063@2|Bacteria,1MV9A@1224|Proteobacteria,2TTZZ@28211|Alphaproteobacteria,3JVH5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Alcohol dehydrogenase GroES-like domain	MA20_17025	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_2327708_3	1297865.APJD01000007_gene2360	7.008e-148	470.0	COG1028@1|root,COG1028@2|Bacteria,1RCKA@1224|Proteobacteria,2U6QJ@28211|Alphaproteobacteria,3JSW0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_2327708_4	1297865.APJD01000007_gene2361	2.654e-137	437.0	COG0765@1|root,COG0765@2|Bacteria,1MX3E@1224|Proteobacteria,2U2RK@28211|Alphaproteobacteria,3JUD6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02029,ko:K10002	ko02010,ko02020,map02010,map02020	M00230,M00236	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.19,3.A.1.3.4	-	-	BPD_transp_1
SX3_k127_2327708_2	1230476.C207_02490	1.008e-181	572.0	COG0834@1|root,COG0834@2|Bacteria,1NS2X@1224|Proteobacteria,2TUE9@28211|Alphaproteobacteria,3JUBN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
SX3_k127_2351034_8	1230476.C207_05844	1.832e-25	107.0	COG1329@1|root,COG1329@2|Bacteria,1MWI2@1224|Proteobacteria,2TTVP@28211|Alphaproteobacteria,3JR9K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	CarD-like/TRCF domain	carD	-	-	ko:K07736	-	-	-	-	ko00000,ko03000	-	-	-	CarD_CdnL_TRCF
SX3_k127_2351034_4	398525.KB900701_gene1154	4.824e-74	250.0	COG1146@1|root,COG1146@2|Bacteria,1RH5I@1224|Proteobacteria,2U98K@28211|Alphaproteobacteria,3JYTB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions	QU41_04200	-	-	ko:K05524	-	-	-	-	ko00000	-	-	-	DUF3470,Fer4
SX3_k127_2351034_6	398525.KB900701_gene1155	6.2e-50	178.0	COG1188@1|root,COG1188@2|Bacteria,1MZR6@1224|Proteobacteria,2UBS3@28211|Alphaproteobacteria,3K08V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	S4 domain	hslR	-	-	ko:K04762	-	-	-	-	ko00000,ko03110	-	-	-	S4
SX3_k127_2351034_0	1297865.APJD01000015_gene3418	0.0	2227.0	COG4581@1|root,COG4581@2|Bacteria,1MVD6@1224|Proteobacteria,2TR7N@28211|Alphaproteobacteria,3JTWZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	helicase superfamily c-terminal domain	mgpS	-	3.6.4.13	ko:K17675	-	-	-	-	ko00000,ko01000,ko03029	-	-	-	Helicase_C
SX3_k127_2351034_2	1297865.APJD01000015_gene3417	4.402e-170	535.0	COG3064@1|root,COG3064@2|Bacteria,1NAWA@1224|Proteobacteria,2TSQY@28211|Alphaproteobacteria,3JUF1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF3108)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3108
SX3_k127_2351034_5	1230476.C207_05839	2.372e-58	203.0	COG0227@1|root,COG0227@2|Bacteria,1MZ57@1224|Proteobacteria,2UBQU@28211|Alphaproteobacteria,3JZCT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL28 family	rpmB	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02902	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L28
SX3_k127_2351034_1	316056.RPC_0142	2.164e-236	745.0	COG4112@1|root,COG4112@2|Bacteria	2|Bacteria	-	-	ymaB	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_2351034_3	316056.RPC_0143	3.985e-94	314.0	COG0127@1|root,COG0127@2|Bacteria,1RDEV@1224|Proteobacteria	1224|Proteobacteria	F	COG0127 Xanthosine triphosphate pyrophosphatase	-	-	3.6.1.66	ko:K02428	ko00230,map00230	-	R00426,R00720,R01855,R02100,R02720,R03531	RC00002	ko00000,ko00001,ko01000	-	-	-	Ham1p_like
SX3_k127_2351034_7	316056.RPC_0144	5.274e-34	132.0	COG0846@1|root,COG0846@2|Bacteria,1MXU2@1224|Proteobacteria,2U2CA@28211|Alphaproteobacteria,3JWPC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	SIR2-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SIR2_2
SX3_k127_2358276_1	1297865.APJD01000014_gene585	4.834e-107	348.0	COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,2TRNX@28211|Alphaproteobacteria,3JWKN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Amino acid permease	-	-	-	ko:K03294	-	-	-	-	ko00000	2.A.3.2	-	-	AA_permease_2,AA_permease_C
SX3_k127_2358276_5	1297865.APJD01000014_gene586	1.751e-45	168.0	2A8U7@1|root,30XXF@2|Bacteria,1RHAI@1224|Proteobacteria,2U9BZ@28211|Alphaproteobacteria,3JZJQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	BA14K-like protein	-	-	-	-	-	-	-	-	-	-	-	-	BA14K
SX3_k127_2358276_2	1297865.APJD01000014_gene587	7.181e-107	349.0	COG3258@1|root,COG3258@2|Bacteria,1QTYW@1224|Proteobacteria,2TWPT@28211|Alphaproteobacteria,3JVV3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrome_CBB3
SX3_k127_2358276_0	1230476.C207_06459	6.754e-253	782.0	COG2041@1|root,COG2041@2|Bacteria,1MX9E@1224|Proteobacteria,2TRK0@28211|Alphaproteobacteria,3JRFB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Mo-co oxidoreductase dimerisation domain	-	-	-	ko:K17225	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	Mo-co_dimer,Oxidored_molyb,TAT_signal
SX3_k127_2358276_3	1297865.APJD01000014_gene589	1.379e-96	319.0	COG5649@1|root,COG5649@2|Bacteria,1RDDG@1224|Proteobacteria,2U73S@28211|Alphaproteobacteria,3JY9D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DU1801)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1801
SX3_k127_2358276_4	1297865.APJD01000014_gene590	1.802e-74	250.0	COG0346@1|root,COG0346@2|Bacteria,1MUWY@1224|Proteobacteria,2TTMJ@28211|Alphaproteobacteria,3JSUU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	xylE	-	1.13.11.2	ko:K00446	ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220	M00569	R00816,R04089,R05295,R05404,R05406,R07795	RC00387,RC00643,RC01075,RC01364,RC01914	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_2359266_20	1230476.C207_00777	3.027e-55	195.0	296W3@1|root,2ZU4W@2|Bacteria,1RGY5@1224|Proteobacteria,2U96A@28211|Alphaproteobacteria,3JZCE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2359266_16	1297865.APJD01000008_gene5621	2.254e-95	312.0	2ER0Q@1|root,33IK9@2|Bacteria,1RJ0D@1224|Proteobacteria,2U7E0@28211|Alphaproteobacteria,3JZ3G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	T3SS negative regulator,GrlR	-	-	-	-	-	-	-	-	-	-	-	-	GrlR
SX3_k127_2359266_12	1297865.APJD01000008_gene5620	1.231e-151	485.0	COG2063@1|root,COG2063@2|Bacteria,1RDEY@1224|Proteobacteria,2TRHN@28211|Alphaproteobacteria,3JQVQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation	flgH	-	-	ko:K02393	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlgH
SX3_k127_2359266_4	1297865.APJD01000008_gene5619	5.854e-213	664.0	COG1261@1|root,COG1261@2|Bacteria,1PM4C@1224|Proteobacteria,2TRUS@28211|Alphaproteobacteria,3JVWP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Chaperone for flagella basal body P-ring formation	flgA	-	-	ko:K02386	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	ChapFlgA
SX3_k127_2359266_9	1297865.APJD01000008_gene5618	3.871e-162	511.0	COG4786@1|root,COG4786@2|Bacteria,1MVMA@1224|Proteobacteria,2TRR4@28211|Alphaproteobacteria,3JRIZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	flagellar basal-body rod protein FlgG	flgG	-	-	ko:K02392	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
SX3_k127_2359266_10	1297865.APJD01000008_gene5617	1.929e-160	507.0	COG4786@1|root,COG4786@2|Bacteria,1PZ24@1224|Proteobacteria,2U06G@28211|Alphaproteobacteria,3JR0D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Belongs to the flagella basal body rod proteins family	flgF	-	-	ko:K02391,ko:K02392	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
SX3_k127_2359266_15	1297865.APJD01000008_gene5616	1.236e-98	322.0	COG1580@1|root,COG1580@2|Bacteria,1RH5D@1224|Proteobacteria,2U9BF@28211|Alphaproteobacteria,3JSJ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Controls the rotational direction of flagella during chemotaxis	fliL	-	-	ko:K02415	-	-	-	-	ko00000,ko02035	-	-	-	FliL
SX3_k127_2359266_2	1297865.APJD01000008_gene5615	3.993e-253	782.0	COG1868@1|root,COG1868@2|Bacteria,1MX01@1224|Proteobacteria,2TR4F@28211|Alphaproteobacteria,3JRPA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation	fliM	-	-	ko:K02416	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliM,FliMN_C
SX3_k127_2359266_19	1297865.APJD01000008_gene5614	4.62e-76	257.0	2A6BI@1|root,30V4A@2|Bacteria,1RAJ5@1224|Proteobacteria,2U5D4@28211|Alphaproteobacteria,3JY0B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_08455	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2359266_11	1297865.APJD01000008_gene5613	2.815e-157	498.0	COG3334@1|root,COG3334@2|Bacteria,1RKF6@1224|Proteobacteria,2TRR1@28211|Alphaproteobacteria,3JTXB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PFAM MgtE intracellular	MA20_08460	-	-	-	-	-	-	-	-	-	-	-	MgtE_N
SX3_k127_2359266_21	1297865.APJD01000008_gene5612	5.184e-53	192.0	COG3093@1|root,COG3093@2|Bacteria,1N76J@1224|Proteobacteria,2UFXF@28211|Alphaproteobacteria,3K0DJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix	higA	-	-	ko:K07334,ko:K21498	-	-	-	-	ko00000,ko02048	-	-	-	HTH_3
SX3_k127_2359266_25	1038859.AXAU01000012_gene4260	1.633e-44	162.0	COG3549@1|root,COG3549@2|Bacteria,1MZKX@1224|Proteobacteria,2UBQF@28211|Alphaproteobacteria,3K08T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	RelE-like toxin of type II toxin-antitoxin system HigB	-	-	-	ko:K07334	-	-	-	-	ko00000,ko02048	-	-	-	HigB-like_toxin
SX3_k127_2359266_0	1297865.APJD01000008_gene5610	0.0	2376.0	COG0457@1|root,COG0457@2|Bacteria,1N09H@1224|Proteobacteria,2TSKT@28211|Alphaproteobacteria,3JS1S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2359266_7	1297865.APJD01000008_gene5609	7.508e-181	567.0	COG0466@1|root,COG1680@1|root,COG0466@2|Bacteria,COG1680@2|Bacteria,1QWJF@1224|Proteobacteria,2TWZH@28211|Alphaproteobacteria,3K6QB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OV	Domain of unknown function (DUF3471)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3471
SX3_k127_2359266_23	172088.AUGA01000011_gene2652	5.252e-52	186.0	2AB3R@1|root,310HR@2|Bacteria,1MZK6@1224|Proteobacteria,2UC1I@28211|Alphaproteobacteria,3K0F6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2359266_6	1297865.APJD01000008_gene5607	8.95e-193	603.0	COG0583@1|root,COG0583@2|Bacteria,1MUNN@1224|Proteobacteria,2VEUG@28211|Alphaproteobacteria,3JQM6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	MA20_07850	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2359266_13	1297865.APJD01000008_gene5606	4.418e-146	465.0	COG1028@1|root,COG1028@2|Bacteria,1MUWP@1224|Proteobacteria,2TUTV@28211|Alphaproteobacteria,3JS9J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_2359266_24	1297865.APJD01000008_gene5605	1.444e-44	162.0	COG1942@1|root,COG1942@2|Bacteria,1N6WW@1224|Proteobacteria,2UBZW@28211|Alphaproteobacteria,3K0FY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tautomerase enzyme	MA20_07840	-	5.3.2.6	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R03966,R05389	RC01040,RC01355	ko00000,ko00001,ko00002,ko01000	-	-	-	Tautomerase
SX3_k127_2359266_1	1297865.APJD01000008_gene5604	1.227e-253	785.0	COG0477@1|root,COG2814@2|Bacteria,1MW6T@1224|Proteobacteria,2U1KC@28211|Alphaproteobacteria,3JX5D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Uncharacterised MFS-type transporter YbfB	MA20_07835	-	-	-	-	-	-	-	-	-	-	-	MFS_4
SX3_k127_2359266_26	319003.Bra1253DRAFT_06100	2.289e-06	59.0	2ACCG@1|root,311XQ@2|Bacteria,1N2IH@1224|Proteobacteria,2UCXM@28211|Alphaproteobacteria,3K05X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2359266_3	1297865.APJD01000008_gene5603	1.259e-250	774.0	COG0520@1|root,COG0520@2|Bacteria,1QU0N@1224|Proteobacteria,2TW6K@28211|Alphaproteobacteria,3JTWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-V	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_5
SX3_k127_2359266_5	1297865.APJD01000008_gene5602	5.865e-199	620.0	COG0346@1|root,COG0346@2|Bacteria,1MX75@1224|Proteobacteria,2TRQS@28211|Alphaproteobacteria,3JUA0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	lactoylglutathione lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2359266_14	1230476.C207_00758	8.593e-141	452.0	COG1338@1|root,COG1338@2|Bacteria,1MVBU@1224|Proteobacteria,2TT93@28211|Alphaproteobacteria,3JRCE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Plays a role in the flagellum-specific transport system	fliP	-	-	ko:K02419	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	FliP
SX3_k127_2359266_8	1297865.APJD01000008_gene5600	3.08e-176	555.0	COG3115@1|root,COG3115@2|Bacteria,1N9KJ@1224|Proteobacteria,2TUCT@28211|Alphaproteobacteria,3JSXR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Flagellar biosynthesis protein, FliO	-	-	-	-	-	-	-	-	-	-	-	-	FliO
SX3_k127_2359266_17	1297865.APJD01000008_gene5599	3.741e-83	277.0	COG1815@1|root,COG1815@2|Bacteria,1N1G1@1224|Proteobacteria,2UCJ4@28211|Alphaproteobacteria,3JY2R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	flgB	-	-	ko:K02387	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod
SX3_k127_2359266_18	1230476.C207_00755	2.523e-82	274.0	COG1558@1|root,COG1558@2|Bacteria,1RHI3@1224|Proteobacteria,2U94I@28211|Alphaproteobacteria,3JY7J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Belongs to the flagella basal body rod proteins family	flgC	-	-	ko:K02388	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
SX3_k127_2359266_22	1297865.APJD01000008_gene5597	2.364e-52	185.0	COG1677@1|root,COG1677@2|Bacteria,1QFE1@1224|Proteobacteria,2V5VZ@28211|Alphaproteobacteria,3JZEN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellar hook-basal body complex protein FliE	fliE	-	-	ko:K02408	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliE
SX3_k127_2377229_5	1297865.APJD01000035_gene5423	2.383e-20	89.0	COG3843@1|root,COG3843@2|Bacteria	2|Bacteria	U	relaxase mobilization nuclease domain protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF3363
SX3_k127_2377229_0	1297865.APJD01000035_gene5424	0.0	1349.0	COG3505@1|root,COG3505@2|Bacteria,1MV1G@1224|Proteobacteria,2TR6N@28211|Alphaproteobacteria,3JRBG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PFAM TRAG family protein	-	-	-	ko:K03205	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	T4SS-DNA_transf
SX3_k127_2377229_3	883078.HMPREF9695_03886	1.753e-82	276.0	COG3905@1|root,COG3905@2|Bacteria,1MXJX@1224|Proteobacteria,2U7AR@28211|Alphaproteobacteria,3JY7H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	copG family	-	-	-	-	-	-	-	-	-	-	-	-	RHH_1
SX3_k127_2377229_2	883078.HMPREF9695_03885	5.535e-131	419.0	COG4566@1|root,COG4566@2|Bacteria,1R47Z@1224|Proteobacteria,2TSQS@28211|Alphaproteobacteria,3K6F0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, luxR family	nodW	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_2377229_1	883078.HMPREF9695_03884	3.757e-229	712.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,3K5XA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	GAF,HAMP,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_8,PAS_9,dCache_1
SX3_k127_2377229_4	1304878.AUGD01000030_gene3651	1.437e-50	179.0	COG1937@1|root,COG1937@2|Bacteria,1MZXV@1224|Proteobacteria,2UERS@28211|Alphaproteobacteria,3K0A8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal-sensitive transcriptional repressor	-	-	-	-	-	-	-	-	-	-	-	-	Trns_repr_metal
SX3_k127_2387993_5	1297865.APJD01000020_gene121	2.646e-49	180.0	COG1942@1|root,COG1942@2|Bacteria,1NBW3@1224|Proteobacteria,2UHFK@28211|Alphaproteobacteria,3JZW0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tautomerase enzyme	-	-	5.3.2.6	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R03966,R05389	RC01040,RC01355	ko00000,ko00001,ko00002,ko01000	-	-	-	Tautomerase
SX3_k127_2387993_2	1297865.APJD01000020_gene120	1.412e-203	635.0	COG4977@1|root,COG4977@2|Bacteria,1MXAU@1224|Proteobacteria,2VF3N@28211|Alphaproteobacteria,3JT8J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI,HTH_18
SX3_k127_2387993_1	1297865.APJD01000020_gene119	2.898e-232	719.0	COG1840@1|root,COG1840@2|Bacteria,1MXZ8@1224|Proteobacteria,2V4CF@28211|Alphaproteobacteria,3JTT4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial extracellular solute-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_6
SX3_k127_2387993_0	1297865.APJD01000020_gene118	4.585e-233	721.0	COG2355@1|root,COG2355@2|Bacteria,1MWEW@1224|Proteobacteria,2TR5C@28211|Alphaproteobacteria,3JTYK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Membrane dipeptidase (Peptidase family M19)	-	-	3.4.13.19	ko:K01273	-	-	-	-	ko00000,ko00537,ko01000,ko01002,ko04147	-	-	-	Peptidase_M19
SX3_k127_2387993_4	1297865.APJD01000020_gene117	1.806e-137	439.0	COG0625@1|root,COG0625@2|Bacteria,1NE6Z@1224|Proteobacteria,2TVN6@28211|Alphaproteobacteria,3JVXF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_C_3,GST_N
SX3_k127_2387993_3	1297865.APJD01000020_gene116	1.12e-166	524.0	COG0784@1|root,COG3852@1|root,COG4191@1|root,COG0784@2|Bacteria,COG3852@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JTQS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9,Response_reg
SX3_k127_2391321_3	1297865.APJD01000049_gene5516	1.135e-238	739.0	COG1109@1|root,COG1109@2|Bacteria,1MU24@1224|Proteobacteria,2TQWH@28211|Alphaproteobacteria,3JS5S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate	glmM	-	5.4.2.10	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	-	R02060	RC00408	ko00000,ko00001,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
SX3_k127_2391321_17	1297865.APJD01000049_gene5517	2.461e-38	143.0	2AG22@1|root,3166B@2|Bacteria,1N9VT@1224|Proteobacteria,2UGD7@28211|Alphaproteobacteria,3K1VR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2391321_2	1297865.APJD01000049_gene5518	3.006e-246	762.0	COG1304@1|root,COG1304@2|Bacteria,1MUEZ@1224|Proteobacteria,2TQNW@28211|Alphaproteobacteria,3JSM5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FMN-dependent dehydrogenase	lldD	-	1.1.2.3	ko:K00101	ko00620,ko01100,map00620,map01100	-	R00196	RC00044	ko00000,ko00001,ko01000	-	-	-	FMN_dh
SX3_k127_2391321_9	1297865.APJD01000049_gene5519	1.366e-128	413.0	2B41E@1|root,31WRS@2|Bacteria,1P8VA@1224|Proteobacteria,2TT81@28211|Alphaproteobacteria,3JUBQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2391321_10	1230476.C207_06107	2.206e-121	391.0	2B41E@1|root,31WRS@2|Bacteria,1P8VA@1224|Proteobacteria,2TT81@28211|Alphaproteobacteria,3JVF8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2391321_5	1297865.APJD01000049_gene5521	4.106e-187	588.0	COG0169@1|root,COG0169@2|Bacteria,1MVH4@1224|Proteobacteria,2TS99@28211|Alphaproteobacteria,3JU3E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)	aroE	-	1.1.1.25	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02413	RC00206	ko00000,ko00001,ko00002,ko01000	-	-	-	Shikimate_DH,Shikimate_dh_N
SX3_k127_2391321_11	1297865.APJD01000049_gene5522	2.647e-120	389.0	COG3619@1|root,COG3619@2|Bacteria,1N3T5@1224|Proteobacteria,2U3H0@28211|Alphaproteobacteria,3JS0V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1275)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1275
SX3_k127_2391321_0	1230476.C207_06110	0.0	1309.0	COG0480@1|root,COG0480@2|Bacteria,1MU2W@1224|Proteobacteria,2TYVK@28211|Alphaproteobacteria,3JQUI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	elongation factor G	MA20_05220	-	-	ko:K02355	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2
SX3_k127_2391321_6	1297865.APJD01000049_gene5524	1.396e-181	570.0	COG0583@1|root,COG0583@2|Bacteria,1MV0Z@1224|Proteobacteria,2VEWX@28211|Alphaproteobacteria,3K6DY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	ko:K21757	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_2391321_4	1297865.APJD01000049_gene5525	2.008e-206	663.0	COG2267@1|root,COG2267@2|Bacteria,1QVK5@1224|Proteobacteria,2TWH1@28211|Alphaproteobacteria,3JQT4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_2391321_14	1297865.APJD01000049_gene5526	7.793e-92	305.0	2CPI3@1|root,32SJ7@2|Bacteria,1N1IR@1224|Proteobacteria,2UBVS@28211|Alphaproteobacteria,3JX44@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF992)	MA20_05225	-	-	-	-	-	-	-	-	-	-	-	DUF992
SX3_k127_2391321_13	1230476.C207_06113	2.576e-97	324.0	2CPI3@1|root,32SJ7@2|Bacteria,1N1IR@1224|Proteobacteria,2UBVS@28211|Alphaproteobacteria,3JZ8B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF992)	-	-	-	-	-	-	-	-	-	-	-	-	DUF992
SX3_k127_2391321_1	1297865.APJD01000049_gene5528	1.305e-263	813.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2TRPK@28211|Alphaproteobacteria,3JTIB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	DegT/DnrJ/EryC1/StrS aminotransferase family	aatA	-	2.6.1.1	ko:K00812	ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	-	R00355,R00694,R00734,R00896,R02433,R02619,R05052	RC00006	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_1_2
SX3_k127_2391321_8	1297865.APJD01000049_gene5529	5.599e-144	456.0	COG0625@1|root,COG0625@2|Bacteria,1REDI@1224|Proteobacteria,2TR9W@28211|Alphaproteobacteria,3JRNA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the GST superfamily	MA20_05235	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_N,GST_N_3
SX3_k127_2391321_18	1230476.C207_06116	2.238e-22	96.0	2ASG9@1|root,31HWE@2|Bacteria,1NFKA@1224|Proteobacteria,2UFRC@28211|Alphaproteobacteria,3K1D1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2391321_19	1297865.APJD01000049_gene5531	6.426e-22	97.0	29FDN@1|root,302BB@2|Bacteria,1NCGZ@1224|Proteobacteria,2UIVU@28211|Alphaproteobacteria,3K135@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2391321_15	1297865.APJD01000049_gene5532	3.513e-73	249.0	COG3169@1|root,COG3169@2|Bacteria,1RHBQ@1224|Proteobacteria,2U9M1@28211|Alphaproteobacteria,3JZ36@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative member of DMT superfamily (DUF486)	-	-	-	ko:K09922	-	-	-	-	ko00000	-	-	-	DMT_6
SX3_k127_2391321_7	1297865.APJD01000049_gene5533	1.295e-165	523.0	COG2199@1|root,COG3706@2|Bacteria,1Q8X8@1224|Proteobacteria,2TTKT@28211|Alphaproteobacteria,3JTED@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	PAS fold	-	-	-	-	-	-	-	-	-	-	-	-	DUF4118,PAS_7
SX3_k127_2391321_12	1297865.APJD01000049_gene5534	2.18e-100	328.0	COG0454@1|root,COG0454@2|Bacteria,1QU5Y@1224|Proteobacteria,2TW13@28211|Alphaproteobacteria,3K6QQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_2391321_16	172088.AUGA01000044_gene6926	4.641e-39	147.0	COG0667@1|root,COG0667@2|Bacteria,1MV2Y@1224|Proteobacteria,2TS02@28211|Alphaproteobacteria,3JRPI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldo/keto reductase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
SX3_k127_2391877_5	1297865.APJD01000024_gene430	6.36e-19	85.0	COG0835@1|root,COG0835@2|Bacteria,1RAH1@1224|Proteobacteria,2U59Y@28211|Alphaproteobacteria,3JYAB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Two component signalling adaptor domain	cheW	-	-	ko:K03408	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	CheW
SX3_k127_2391877_3	398525.KB900701_gene7024	1.77e-73	247.0	COG2199@1|root,COG3706@2|Bacteria,1RH2K@1224|Proteobacteria,2U9EP@28211|Alphaproteobacteria,3JY1Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver domain	cheY	-	-	ko:K03413	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko02022,ko02035	-	-	-	Response_reg
SX3_k127_2391877_1	1297865.APJD01000024_gene428	1.314e-231	720.0	COG2201@1|root,COG2201@2|Bacteria,1MWCN@1224|Proteobacteria,2TSGV@28211|Alphaproteobacteria,3JT3I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR	cheB	-	3.1.1.61,3.5.1.44	ko:K03412	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko01000,ko02022,ko02035	-	-	-	CheB_methylest,Response_reg
SX3_k127_2391877_2	1297865.APJD01000024_gene427	1.79e-181	576.0	COG1352@1|root,COG1352@2|Bacteria,1MU6W@1224|Proteobacteria,2TRQ3@28211|Alphaproteobacteria,3JTPM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP	MA20_09645	-	2.1.1.80	ko:K00575	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko01000,ko02035	-	-	-	CheR,CheR_N
SX3_k127_2391877_0	1297865.APJD01000024_gene426	8.013e-264	812.0	COG0754@1|root,COG0754@2|Bacteria,1MW6V@1224|Proteobacteria,2TU8J@28211|Alphaproteobacteria,3JUGD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glutathionylspermidine synthase preATP-grasp	MA20_09650	-	-	-	-	-	-	-	-	-	-	-	GSP_synth
SX3_k127_2391877_4	1230476.C207_06935	3.737e-21	94.0	2BSN8@1|root,32MQV@2|Bacteria,1PBCY@1224|Proteobacteria,2UYI6@28211|Alphaproteobacteria,3K5K6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2393766_3	1429916.X566_00710	2.957e-30	119.0	COG5489@1|root,COG5489@2|Bacteria,1RK0P@1224|Proteobacteria,2U90N@28211|Alphaproteobacteria,3JZ2Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_2393766_7	1500301.JQMF01000005_gene3895	2.061e-07	59.0	COG0625@1|root,COG0625@2|Bacteria,1NE6Z@1224|Proteobacteria,2TVN6@28211|Alphaproteobacteria,4BBA8@82115|Rhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_3,GST_N
SX3_k127_2393766_8	1211777.BN77_p2180002	0.0003014	47.0	2A36C@1|root,30RMU@2|Bacteria,1Q86Y@1224|Proteobacteria,2VECV@28211|Alphaproteobacteria,4BHGU@82115|Rhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2393766_6	288000.BBta_p0007	1.226e-09	64.0	COG5489@1|root,COG5489@2|Bacteria,1RK0P@1224|Proteobacteria,2U90N@28211|Alphaproteobacteria,3JZ2Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_2393766_2	1429916.X566_00710	3.379e-53	196.0	COG5489@1|root,COG5489@2|Bacteria,1RK0P@1224|Proteobacteria,2U90N@28211|Alphaproteobacteria,3JZ2Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_2393766_1	395963.Bind_2313	1.608e-64	236.0	COG2865@1|root,COG2865@2|Bacteria,1RD2Z@1224|Proteobacteria,2UJC9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	PFAM AAA-4 family protein	-	-	-	-	-	-	-	-	-	-	-	-	AlbA_2
SX3_k127_2393766_0	288000.BBta_p0290	6.018e-81	272.0	28IIA@1|root,2Z8JD@2|Bacteria,1R3RS@1224|Proteobacteria,2U09X@28211|Alphaproteobacteria,3JXAJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HTH DNA binding domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF1612,HTH_13
SX3_k127_2394691_30	1297865.APJD01000020_gene193	7.297e-33	130.0	COG1276@1|root,COG2372@1|root,COG1276@2|Bacteria,COG2372@2|Bacteria,1MXGC@1224|Proteobacteria,2TVGX@28211|Alphaproteobacteria,3JS3T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	CopC domain	ycnJ	-	-	ko:K07245,ko:K14166	-	-	-	-	ko00000,ko02000	9.B.62.1	-	-	CopC,CopD
SX3_k127_2394691_19	1297865.APJD01000020_gene192	2.532e-112	362.0	COG4549@1|root,COG4549@2|Bacteria,1RGDY@1224|Proteobacteria,2VGUA@28211|Alphaproteobacteria,3JRBK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unkown function (DUF1775)	-	-	-	ko:K09796	-	-	-	-	ko00000,ko03110	-	-	-	DUF1775
SX3_k127_2394691_21	1297865.APJD01000020_gene191	6.647e-107	347.0	COG2847@1|root,COG2847@2|Bacteria,1MZ3M@1224|Proteobacteria,2UBUR@28211|Alphaproteobacteria,3JX1P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Copper chaperone PCu(A)C	-	-	-	ko:K09796	-	-	-	-	ko00000,ko03110	-	-	-	PCuAC
SX3_k127_2394691_22	1297865.APJD01000020_gene190	1.095e-106	347.0	COG0526@1|root,COG0526@2|Bacteria,1MZ9B@1224|Proteobacteria,2U6Q1@28211|Alphaproteobacteria,3JZ47@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CO	COG0526 Thiol-disulfide isomerase and thioredoxins	MA20_37405	-	-	-	-	-	-	-	-	-	-	-	Redoxin,Thioredoxin
SX3_k127_2394691_10	1297865.APJD01000020_gene189	2.618e-268	833.0	COG4409@1|root,COG4409@2|Bacteria,1MVUD@1224|Proteobacteria,2TRQQ@28211|Alphaproteobacteria,3JRHA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	exo-alpha-(2->6)-sialidase activity	-	-	-	-	-	-	-	-	-	-	-	-	BNR_2
SX3_k127_2394691_0	1297865.APJD01000020_gene188	0.0	1576.0	COG4772@1|root,COG4772@2|Bacteria,1MUIH@1224|Proteobacteria,2TRPJ@28211|Alphaproteobacteria,3JRAT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB-dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_2394691_26	1297865.APJD01000020_gene187	8.577e-72	247.0	2A99Z@1|root,30YEV@2|Bacteria,1RIIH@1224|Proteobacteria,2UA9Y@28211|Alphaproteobacteria,3JZKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2946)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2946
SX3_k127_2394691_24	1297865.APJD01000020_gene186	1.766e-86	286.0	COG1017@1|root,COG1017@2|Bacteria,1REV4@1224|Proteobacteria,2U757@28211|Alphaproteobacteria,3JZ5V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	nitric oxide dioxygenase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2394691_12	1230476.C207_00867	2.527e-217	679.0	COG1879@1|root,COG1879@2|Bacteria,1NRXG@1224|Proteobacteria,2TW5I@28211|Alphaproteobacteria,3JTWN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding proteins and sugar binding domain of LacI family	MA20_37380	-	-	ko:K10439	ko02010,ko02030,map02010,map02030	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	Peripla_BP_4
SX3_k127_2394691_5	1297865.APJD01000020_gene184	5.682e-317	972.0	COG1129@1|root,COG1129@2|Bacteria,1MU22@1224|Proteobacteria,2TQJV@28211|Alphaproteobacteria,3JS9B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_37375	-	3.6.3.17	ko:K10441	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	ABC_tran
SX3_k127_2394691_13	1297865.APJD01000020_gene183	1.386e-205	641.0	COG1172@1|root,COG1172@2|Bacteria,1MX7D@1224|Proteobacteria,2TYRW@28211|Alphaproteobacteria,3JT84@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Branched-chain amino acid transport system / permease component	MA20_37370	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0015144,GO:0015145,GO:0015749,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0034219,GO:0044425,GO:0044464,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944	-	ko:K10440	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	BPD_transp_2
SX3_k127_2394691_7	1297865.APJD01000020_gene182	2.65e-286	880.0	COG4857@1|root,COG4857@2|Bacteria,1MXBW@1224|Proteobacteria,2TR0Z@28211|Alphaproteobacteria,3JR7F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate	mtnK	-	2.7.1.100	ko:K00899	ko00270,ko01100,map00270,map01100	M00034	R04143	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	APH
SX3_k127_2394691_27	1297865.APJD01000020_gene181	2.267e-60	211.0	COG5454@1|root,COG5454@2|Bacteria,1N6T0@1224|Proteobacteria,2UF4C@28211|Alphaproteobacteria,3JZFS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1467)	MA20_37275	-	-	-	-	-	-	-	-	-	-	-	DUF1467
SX3_k127_2394691_25	1297865.APJD01000020_gene180	1.311e-83	277.0	COG0346@1|root,COG0346@2|Bacteria,1RCYU@1224|Proteobacteria,2U728@28211|Alphaproteobacteria,3JY01@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	mce	-	5.1.99.1	ko:K05606	ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200	M00373,M00375,M00376,M00741	R02765,R09979	RC00780,RC02739	ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase_4
SX3_k127_2394691_3	1297865.APJD01000020_gene179	0.0	1124.0	COG0595@1|root,COG0595@2|Bacteria,1MUGV@1224|Proteobacteria,2TQTR@28211|Alphaproteobacteria,3JRQE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Zn-dependent metallo-hydrolase RNA specificity domain	rnjA	-	-	ko:K12574	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	Lactamase_B,Lactamase_B_2,RMMBL
SX3_k127_2394691_14	1297865.APJD01000020_gene178	2.549e-164	520.0	COG0340@1|root,COG0340@2|Bacteria,1MWCC@1224|Proteobacteria,2TS82@28211|Alphaproteobacteria,3JR9E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Biotin protein ligase C terminal domain	birA	-	6.3.4.15	ko:K03524	ko00780,ko01100,map00780,map01100	-	R01074,R05145	RC00043,RC00070,RC00096,RC02896	ko00000,ko00001,ko01000,ko03000	-	-	-	BPL_C,BPL_LplA_LipB
SX3_k127_2394691_8	1297865.APJD01000020_gene177	8.16e-281	866.0	COG1007@1|root,COG1007@2|Bacteria,1MV56@1224|Proteobacteria,2TQMX@28211|Alphaproteobacteria,3JSRU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoN	-	1.6.5.3	ko:K00343	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Proton_antipo_M
SX3_k127_2394691_4	1297865.APJD01000020_gene176	1.1e-322	988.0	COG1008@1|root,COG1008@2|Bacteria,1MV7V@1224|Proteobacteria,2TSNK@28211|Alphaproteobacteria,3JTNA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH-ubiquinone oxidoreductase chain 4, amino terminus	nuoM	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00342	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q5_N,Proton_antipo_M
SX3_k127_2394691_1	1297865.APJD01000020_gene175	0.0	1416.0	COG1009@1|root,COG1009@2|Bacteria,1MW2M@1224|Proteobacteria,2TQSS@28211|Alphaproteobacteria,3JSBH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CP	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus	nuoL	-	1.6.5.3	ko:K00341	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	NADH5_C,Proton_antipo_M,Proton_antipo_N
SX3_k127_2394691_28	398525.KB900701_gene5244	3.727e-46	178.0	COG0713@1|root,COG0713@2|Bacteria,1RH0S@1224|Proteobacteria,2U93P@28211|Alphaproteobacteria,3JZE4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoK	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00340	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q2
SX3_k127_2394691_18	1297865.APJD01000020_gene173	7.602e-120	386.0	COG0839@1|root,COG0839@2|Bacteria,1MWJV@1224|Proteobacteria,2TRB2@28211|Alphaproteobacteria,3JRMX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the complex I subunit 6 family	nuoJ	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00339	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q3
SX3_k127_2394691_20	398525.KB900701_gene5246	1.583e-107	349.0	COG1143@1|root,COG1143@2|Bacteria,1MV90@1224|Proteobacteria,2TRFE@28211|Alphaproteobacteria,3JSYS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoI	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3,1.6.99.3	ko:K00338,ko:K03941	ko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016	M00143,M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1,3.D.1.6	-	-	Fer4
SX3_k127_2394691_11	1297865.APJD01000020_gene171	3.544e-220	684.0	COG1005@1|root,COG1005@2|Bacteria,1MU2R@1224|Proteobacteria,2TS09@28211|Alphaproteobacteria,3JRWX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone	nuoH	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00337	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	NADHdh
SX3_k127_2394691_2	1297865.APJD01000020_gene170	0.0	1394.0	COG1034@1|root,COG1034@2|Bacteria,1P8MN@1224|Proteobacteria,2TS97@28211|Alphaproteobacteria,3JSCC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH-quinone oxidoreductase	nuoG	-	1.6.5.3	ko:K00336	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Fer2_4,Molybdopterin,NADH-G_4Fe-4S_3,NADH_dhqG_C
SX3_k127_2394691_23	1297865.APJD01000020_gene169	4.555e-105	341.0	2ADN4@1|root,313CW@2|Bacteria,1R9BP@1224|Proteobacteria,2U1E5@28211|Alphaproteobacteria,3JWH6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2394691_6	1297865.APJD01000020_gene168	4.628e-303	931.0	COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,2TRAH@28211|Alphaproteobacteria,3JRII@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain	nuoF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00335	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_51K,NADH_4Fe-4S,SLBB
SX3_k127_2394691_31	1230476.C207_00849	1.72e-32	129.0	2BIRI@1|root,32CZ2@2|Bacteria,1N7JB@1224|Proteobacteria,2UGKF@28211|Alphaproteobacteria,3K122@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2394691_15	1230476.C207_00848	1.097e-135	431.0	COG1905@1|root,COG1905@2|Bacteria,1MWS2@1224|Proteobacteria,2TSEJ@28211|Alphaproteobacteria,3JU8S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Thioredoxin-like [2Fe-2S] ferredoxin	nuoE	-	1.6.5.3,1.6.99.3	ko:K00334,ko:K03943	ko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016	M00143,M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1,3.D.1.6	-	-	2Fe-2S_thioredx
SX3_k127_2394691_9	1297865.APJD01000020_gene165	1.252e-273	841.0	COG0649@1|root,COG0649@2|Bacteria,1MVIN@1224|Proteobacteria,2TQZ0@28211|Alphaproteobacteria,3JSWA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoD	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00333	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_49kDa
SX3_k127_2394691_16	1297865.APJD01000020_gene164	3.455e-134	432.0	COG0852@1|root,COG0852@2|Bacteria,1MX4B@1224|Proteobacteria,2TSMT@28211|Alphaproteobacteria,3JT07@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoC	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00332	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_30kDa
SX3_k127_2394691_17	1297865.APJD01000020_gene163	9.086e-132	420.0	COG0377@1|root,COG0377@2|Bacteria,1MUI2@1224|Proteobacteria,2TQK3@28211|Alphaproteobacteria,3JTBJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoB	GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114	1.6.5.3	ko:K00331	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q6
SX3_k127_2394691_29	59538.XP_005973860.1	7.608e-46	166.0	COG0838@1|root,KOG4662@2759|Eukaryota,3A8AU@33154|Opisthokonta	33154|Opisthokonta	C	Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone	nad3	-	1.6.5.3	ko:K03880	ko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012	M00142	R11945	RC00061	ko00000,ko00001,ko00002,ko01000,ko03029	3.D.1.6	-	-	Oxidored_q4
SX3_k127_2395931_0	1297865.APJD01000007_gene2174	0.0	1296.0	COG4774@1|root,COG4774@2|Bacteria,1MVZD@1224|Proteobacteria,2TS4K@28211|Alphaproteobacteria,3JR1J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	siderophore receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_2395931_1	1297865.APJD01000007_gene2173	5.205e-247	773.0	COG0031@1|root,COG0031@2|Bacteria,1MUR6@1224|Proteobacteria,2TRHT@28211|Alphaproteobacteria,3JRYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	-	-	2.5.1.47	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021	R00897,R03601,R04859	RC00020,RC02814,RC02821	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_2395931_5	1297865.APJD01000007_gene2172	2.159e-170	536.0	COG1414@1|root,COG1414@2|Bacteria,1Q7BI@1224|Proteobacteria,2TUY4@28211|Alphaproteobacteria,3JRXR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR,IclR
SX3_k127_2395931_3	1297865.APJD01000007_gene2171	3.848e-185	578.0	COG3185@1|root,COG3185@2|Bacteria,1N5EF@1224|Proteobacteria	1224|Proteobacteria	E	Glyoxalase-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase_3
SX3_k127_2395931_7	1297865.APJD01000007_gene2170	1.66e-147	469.0	COG1794@1|root,COG1794@2|Bacteria,1MV03@1224|Proteobacteria,2TRKQ@28211|Alphaproteobacteria,3JW33@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Asp/Glu/Hydantoin racemase	-	-	5.1.1.13	ko:K01779	ko00250,ko01054,map00250,map01054	-	R00491	RC00302	ko00000,ko00001,ko01000	-	-	-	Asp_Glu_race
SX3_k127_2395931_4	1297865.APJD01000007_gene2169	1.253e-176	556.0	COG4120@1|root,COG4120@2|Bacteria,1MXGE@1224|Proteobacteria,2TUWW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K05832	-	M00247	-	-	ko00000,ko00002,ko02000	-	-	-	BPD_transp_2
SX3_k127_2395931_6	1297865.APJD01000007_gene2168	2.405e-151	487.0	COG1101@1|root,COG1101@2|Bacteria,1MVDM@1224|Proteobacteria,2TTDS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	ABC transporter	-	-	-	ko:K05833	-	M00247	-	-	ko00000,ko00002,ko02000	-	-	-	ABC_tran
SX3_k127_2395931_2	1297865.APJD01000007_gene2167	4.784e-199	624.0	COG2984@1|root,COG2984@2|Bacteria,1MW5D@1224|Proteobacteria,2TSG1@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	transport system periplasmic component	-	-	-	ko:K01989	-	M00247	-	-	ko00000,ko00002,ko02000	-	-	-	ABC_sub_bind
SX3_k127_2395931_8	1297865.APJD01000007_gene2166	0.0001023	50.0	COG0604@1|root,COG0604@2|Bacteria,1MX8A@1224|Proteobacteria,2TUVG@28211|Alphaproteobacteria,3JTCJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	-	-	1.1.1.1	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_2398467_7	1297865.APJD01000035_gene5452	2.976e-27	116.0	COG3304@1|root,COG3304@2|Bacteria,1RA96@1224|Proteobacteria,2U742@28211|Alphaproteobacteria,3JYSW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Inner membrane component domain	MA20_16325	-	-	-	-	-	-	-	-	-	-	-	YccF
SX3_k127_2398467_5	1297865.APJD01000035_gene5453	4.155e-128	411.0	COG2128@1|root,COG2128@2|Bacteria,1NFKC@1224|Proteobacteria,2TQSD@28211|Alphaproteobacteria,3JUX0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	decarboxylase	-	-	4.1.1.44	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R03470	RC00938	ko00000,ko00001,ko01000	-	-	-	CMD
SX3_k127_2398467_0	1297865.APJD01000035_gene5454	0.0	1092.0	COG5001@1|root,COG5001@2|Bacteria,1NA20@1224|Proteobacteria,2TU3Z@28211|Alphaproteobacteria,3JREN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	MA20_23465	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,PAS_4
SX3_k127_2398467_3	1297865.APJD01000035_gene5455	2.399e-207	649.0	COG3920@1|root,COG3920@2|Bacteria,1MV4R@1224|Proteobacteria,2U127@28211|Alphaproteobacteria,3JTWU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HWE histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HWE_HK
SX3_k127_2398467_4	1297865.APJD01000035_gene5456	1.897e-170	537.0	COG1028@1|root,COG1028@2|Bacteria,1R4GD@1224|Proteobacteria,2TVNF@28211|Alphaproteobacteria,3JRXE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_2398467_2	1297865.APJD01000035_gene5457	4.288e-211	657.0	COG2114@1|root,COG2114@2|Bacteria,1MVZU@1224|Proteobacteria,2U128@28211|Alphaproteobacteria,3JVWZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	cyaB	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc
SX3_k127_2398467_1	1297865.APJD01000035_gene5458	8.389e-276	848.0	COG2141@1|root,COG2141@2|Bacteria,1NKS6@1224|Proteobacteria,2TT87@28211|Alphaproteobacteria,3JRJ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_23445	-	1.14.13.107	ko:K14733	ko00903,map00903	-	R06398,R09385,R09389,R09393	RC01506	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
SX3_k127_2398467_6	1297865.APJD01000035_gene5459	2.861e-68	233.0	COG0477@1|root,COG0477@2|Bacteria,1MWB4@1224|Proteobacteria,2TWQF@28211|Alphaproteobacteria,3JRCQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_2412683_3	1297865.APJD01000023_gene1061	8.861e-244	753.0	COG0028@1|root,COG0028@2|Bacteria,1MX6Q@1224|Proteobacteria,2TS3K@28211|Alphaproteobacteria,3JTQX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Belongs to the TPP enzyme family	MA20_04525	-	4.1.1.7	ko:K01576	ko00627,ko01120,map00627,map01120	-	R01764,R02672	RC00595	ko00000,ko00001,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_2412683_8	335659.S23_10200	0.0003059	46.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,3JYGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
SX3_k127_2412683_0	1297865.APJD01000023_gene1062	0.0	1061.0	COG2368@1|root,COG2368@2|Bacteria,1PEQG@1224|Proteobacteria,2TVQ7@28211|Alphaproteobacteria,3JTKU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	4-hydroxyphenylacetate 3-hydroxylase C terminal	-	-	4.2.1.120,5.3.3.3	ko:K14534	ko00650,ko00720,ko01100,ko01120,ko01200,map00650,map00720,map01100,map01120,map01200	M00374,M00375	R03031,R10782	RC01857,RC03277	ko00000,ko00001,ko00002,ko01000	-	-	-	HpaB,HpaB_N
SX3_k127_2412683_7	1297865.APJD01000023_gene1063	1.93e-124	400.0	COG1309@1|root,COG1309@2|Bacteria,1MZEP@1224|Proteobacteria,2TQNA@28211|Alphaproteobacteria,3JU9M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_2412683_5	1297865.APJD01000023_gene1064	8.204e-172	539.0	COG4221@1|root,COG4221@2|Bacteria,1MW86@1224|Proteobacteria,2TSEM@28211|Alphaproteobacteria,3JSMN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	MA20_04540	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_2412683_6	1297865.APJD01000023_gene1065	1.391e-145	462.0	COG1272@1|root,COG1272@2|Bacteria,1PGRH@1224|Proteobacteria,2TSXY@28211|Alphaproteobacteria,3JU4N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haemolysin-III related	-	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K11068	-	-	-	-	ko00000,ko02042	-	-	-	HlyIII
SX3_k127_2412683_1	1297865.APJD01000023_gene1066	2.436e-318	975.0	COG3106@1|root,COG3106@2|Bacteria,1MX6E@1224|Proteobacteria,2TR9Y@28211|Alphaproteobacteria,3JRX3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YcjX-like family, DUF463	MA20_04550	-	-	ko:K06918	-	-	-	-	ko00000	-	-	-	DUF463
SX3_k127_2412683_4	1297865.APJD01000023_gene1067	1.366e-208	650.0	COG3768@1|root,COG3768@2|Bacteria,1MU8S@1224|Proteobacteria,2TU53@28211|Alphaproteobacteria,3JU0C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF697)	MA20_04555	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K08990	-	-	-	-	ko00000	-	-	-	DUF697
SX3_k127_2412683_2	1297865.APJD01000023_gene1068	5.434e-264	812.0	COG1807@1|root,COG1807@2|Bacteria,1P6JE@1224|Proteobacteria,2TV39@28211|Alphaproteobacteria,3JRJ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	PMT_2
SX3_k127_2414457_2	1197906.CAJQ02000061_gene3805	1.438e-170	547.0	COG1132@1|root,COG1132@2|Bacteria,1R1XH@1224|Proteobacteria,2TZ6N@28211|Alphaproteobacteria,3K5VP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Replication protein C N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	RP-C,RP-C_C
SX3_k127_2414457_4	1197906.CAJQ02000061_gene3804	1.418e-63	226.0	COG3636@1|root,COG3636@2|Bacteria,1RGA4@1224|Proteobacteria,2U8EH@28211|Alphaproteobacteria,3JZ3Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
SX3_k127_2414457_1	883080.HMPREF9697_03958	9.571e-210	657.0	COG0640@1|root,COG0640@2|Bacteria,1MX7U@1224|Proteobacteria,2TSJX@28211|Alphaproteobacteria,3JSBU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Replication protein C C-terminal region	repC	-	-	ko:K18996	-	-	-	-	ko00000,ko03032	-	-	-	RP-C,RP-C_C
SX3_k127_2414457_3	883078.HMPREF9695_04945	1.178e-162	518.0	COG1475@1|root,COG1475@2|Bacteria,1QAFW@1224|Proteobacteria,2U1MZ@28211|Alphaproteobacteria,3JUKW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	RepB plasmid partitioning protein	repB2	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc,RepB
SX3_k127_2414457_0	883078.HMPREF9695_04946	6.845e-225	700.0	COG1192@1|root,COG1192@2|Bacteria,1MVJU@1224|Proteobacteria,2TRYQ@28211|Alphaproteobacteria,3JV41@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	AAA domain	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
SX3_k127_2417904_5	1297865.APJD01000006_gene4622	2.84e-41	152.0	COG1309@1|root,COG1309@2|Bacteria,1MWKF@1224|Proteobacteria,2TRES@28211|Alphaproteobacteria,3JQWM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_02145	-	-	-	-	-	-	-	-	-	-	-	TetR_C_6,TetR_N
SX3_k127_2417904_1	1297865.APJD01000006_gene4621	1.528e-288	885.0	COG2271@1|root,COG2271@2|Bacteria,1QTW2@1224|Proteobacteria,2U07Z@28211|Alphaproteobacteria,3JR8H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	MA20_02120	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_2417904_4	172088.AUGA01000004_gene3893	4.499e-138	441.0	COG0410@1|root,COG0410@2|Bacteria,1QNQ5@1224|Proteobacteria,2TRA5@28211|Alphaproteobacteria,3JX0C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_2417904_0	1297865.APJD01000006_gene4619	0.0	1143.0	COG0411@1|root,COG4177@1|root,COG0411@2|Bacteria,COG4177@2|Bacteria,1MUTY@1224|Proteobacteria,2TQVU@28211|Alphaproteobacteria,3JRTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C,BPD_transp_2
SX3_k127_2417904_2	1297865.APJD01000006_gene4618	4.398e-174	547.0	COG0559@1|root,COG0559@2|Bacteria,1R6XJ@1224|Proteobacteria,2TVKX@28211|Alphaproteobacteria,3JTMV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_2
SX3_k127_2417904_3	1297865.APJD01000006_gene4617	8.812e-162	509.0	COG0683@1|root,COG0683@2|Bacteria,1MX94@1224|Proteobacteria,2TUB9@28211|Alphaproteobacteria,3JVVA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_2436998_1	398525.KB900701_gene6038	3.229e-257	795.0	COG0683@1|root,COG0683@2|Bacteria,1R7N5@1224|Proteobacteria,2U443@28211|Alphaproteobacteria,3JXJD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6,TAT_signal
SX3_k127_2436998_11	1297865.APJD01000014_gene1018	4.128e-91	301.0	COG4125@1|root,COG4125@2|Bacteria,1RHF1@1224|Proteobacteria,2U9K3@28211|Alphaproteobacteria,3JZI9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Chlorhexidine efflux transporter	-	-	-	-	-	-	-	-	-	-	-	-	BTP
SX3_k127_2436998_6	1297865.APJD01000014_gene1017	1.041e-188	589.0	COG0583@1|root,COG0583@2|Bacteria,1MVGZ@1224|Proteobacteria,2U2YJ@28211|Alphaproteobacteria,3JXZV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2436998_8	1297865.APJD01000014_gene1016	8.827e-151	478.0	COG4221@1|root,COG4221@2|Bacteria,1MV0A@1224|Proteobacteria,2TRAN@28211|Alphaproteobacteria,3JVXB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KR domain	rbtD	-	1.1.1.56	ko:K00039	ko00040,ko01100,map00040,map01100	-	R01895	RC00102	ko00000,ko00001,ko01000	-	-	-	adh_short
SX3_k127_2436998_2	1297865.APJD01000014_gene1015	2.487e-249	771.0	COG2199@1|root,COG2199@2|Bacteria,1PQK4@1224|Proteobacteria,2TSC7@28211|Alphaproteobacteria,3JV2P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase, GGDEF domain	-	-	-	-	-	-	-	-	-	-	-	-	CHASE4,GGDEF
SX3_k127_2436998_7	1297865.APJD01000014_gene1014	6.374e-177	557.0	COG2746@1|root,COG2746@2|Bacteria,1R68C@1224|Proteobacteria,2U1PM@28211|Alphaproteobacteria,3K1MD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Aminoglycoside 3-N-acetyltransferase	-	-	2.3.1.81	ko:K00662	-	-	-	-	ko00000,ko01000,ko01504	-	-	-	Antibiotic_NAT
SX3_k127_2436998_4	1297865.APJD01000014_gene1013	2.467e-218	679.0	COG1253@1|root,COG1253@2|Bacteria,1N0IQ@1224|Proteobacteria,2UPHQ@28211|Alphaproteobacteria,3K350@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function DUF21	-	-	-	-	-	-	-	-	-	-	-	-	DUF21
SX3_k127_2436998_9	1297865.APJD01000014_gene1012	5.78e-133	426.0	COG1309@1|root,COG1309@2|Bacteria,1R67Z@1224|Proteobacteria,2TUIS@28211|Alphaproteobacteria,3JTC6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_2436998_10	1297865.APJD01000014_gene1011	3.012e-116	374.0	COG1765@1|root,COG1765@2|Bacteria,1MWPR@1224|Proteobacteria,2U1VW@28211|Alphaproteobacteria,3JSE0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	OsmC-like protein	-	-	-	-	-	-	-	-	-	-	-	-	OsmC
SX3_k127_2436998_3	172088.AUGA01000051_gene3405	4.842e-222	691.0	COG1960@1|root,COG1960@2|Bacteria,1NDQ8@1224|Proteobacteria,2TU2G@28211|Alphaproteobacteria,3JQUK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_N
SX3_k127_2436998_5	1297865.APJD01000014_gene1008	5.656e-195	608.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2U2DD@28211|Alphaproteobacteria,3JT18@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	-	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_2436998_0	1297865.APJD01000014_gene1007	1.066e-309	949.0	COG0715@1|root,COG0715@2|Bacteria,1MWDN@1224|Proteobacteria,2TS0X@28211|Alphaproteobacteria,3JRD6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	nrtA	-	-	ko:K15576	ko00910,ko02010,map00910,map02010	M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16.1,3.A.1.16.2	-	-	NMT1_2
SX3_k127_2452924_0	1297865.APJD01000005_gene3919	0.0	1559.0	COG1429@1|root,COG1429@2|Bacteria,1MU5W@1224|Proteobacteria,2TQVD@28211|Alphaproteobacteria,3JUQP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	CobN/Magnesium Chelatase	cobN	-	6.6.1.2	ko:K02230	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	CobN-Mg_chel
SX3_k127_2452924_3	1297865.APJD01000005_gene3920	1.973e-249	771.0	COG0155@1|root,COG0155@2|Bacteria,1N541@1224|Proteobacteria,2TQTT@28211|Alphaproteobacteria,3JR0W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Nitrite/Sulfite reductase ferredoxin-like half domain	cobG	-	1.14.13.83	ko:K02229	ko00860,ko01100,map00860,map01100	-	R05217	RC01979	ko00000,ko00001,ko01000	-	-	-	NIR_SIR,NIR_SIR_ferr
SX3_k127_2452924_8	1297865.APJD01000005_gene3921	1.303e-126	408.0	COG2082@1|root,COG2082@2|Bacteria,1MX1E@1224|Proteobacteria,2TRRB@28211|Alphaproteobacteria,3JQTQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Precorrin-8X methylmutase	cobH	-	5.4.99.60,5.4.99.61	ko:K06042	ko00860,ko01100,map00860,map01100	-	R05177,R05814	RC01292,RC01980	ko00000,ko00001,ko01000	-	-	-	CbiC
SX3_k127_2452924_5	1297865.APJD01000005_gene3922	4.596e-158	504.0	COG2243@1|root,COG2243@2|Bacteria,1MV3G@1224|Proteobacteria,2TTJH@28211|Alphaproteobacteria,3JS10@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the precorrin methyltransferase family	cobI	-	2.1.1.130,2.1.1.151	ko:K03394	ko00860,ko01100,map00860,map01100	-	R03948,R05808	RC00003,RC01035,RC01662	ko00000,ko00001,ko01000	-	-	-	TP_methylase
SX3_k127_2452924_6	1297865.APJD01000005_gene3923	3.037e-150	477.0	COG1010@1|root,COG1010@2|Bacteria,1MU79@1224|Proteobacteria,2TQJQ@28211|Alphaproteobacteria,3JUGT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Tetrapyrrole (Corrin/Porphyrin) Methylases	cobJ	-	2.1.1.131,3.7.1.12	ko:K05934,ko:K13541	ko00860,ko01100,map00860,map01100	-	R05180,R05809,R07772	RC00003,RC01293,RC01545,RC02097,RC03471	ko00000,ko00001,ko01000	-	-	-	CbiG_C,CbiG_N,TP_methylase
SX3_k127_2452924_10	987059.RBXJA2T_05973	2.612e-84	292.0	COG2099@1|root,COG2099@2|Bacteria,1MW48@1224|Proteobacteria,2VR1K@28216|Betaproteobacteria	28216|Betaproteobacteria	H	PFAM Precorrin-6x reductase CbiJ CobK	cobK	-	1.3.1.106,1.3.1.54	ko:K05895	ko00860,ko01100,map00860,map01100	-	R05150,R05812	RC01280	ko00000,ko00001,ko01000	-	-	-	CbiJ
SX3_k127_2452924_2	1297865.APJD01000005_gene3925	2.576e-258	797.0	COG2241@1|root,COG2242@1|root,COG2241@2|Bacteria,COG2242@2|Bacteria,1MVJX@1224|Proteobacteria,2TRR5@28211|Alphaproteobacteria,3JUW6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Tetrapyrrole (Corrin/Porphyrin) Methylases	cobL	-	2.1.1.132	ko:K00595	ko00860,ko01100,map00860,map01100	-	R05149	RC00003,RC01279	ko00000,ko00001,ko01000	-	-	-	PCMT,TP_methylase
SX3_k127_2452924_11	1230476.C207_01931	5.341e-48	183.0	2E4BZ@1|root,32Z7J@2|Bacteria,1N6PU@1224|Proteobacteria,2UG8M@28211|Alphaproteobacteria,3JZFU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobalamin synthesis G C-terminus	-	-	3.7.1.12	ko:K02189	ko00860,ko01100,map00860,map01100	-	R07772	RC01545,RC02097	ko00000,ko00001,ko01000	-	-	-	CbiG_C
SX3_k127_2452924_4	1297865.APJD01000005_gene3927	3.427e-165	520.0	COG2875@1|root,COG2875@2|Bacteria,1MVYY@1224|Proteobacteria,2TRU7@28211|Alphaproteobacteria,3JVG2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the precorrin methyltransferase family	cobM	-	2.1.1.133,2.1.1.271	ko:K05936	ko00860,ko01100,map00860,map01100	-	R05181,R05810	RC00003,RC01294,RC02049	ko00000,ko00001,ko01000	-	-	-	TP_methylase
SX3_k127_2452924_1	1297865.APJD01000005_gene3928	1.17e-280	863.0	COG1797@1|root,COG1797@2|Bacteria,1MV7Z@1224|Proteobacteria,2TR0W@28211|Alphaproteobacteria,3JTID@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L-glutamine or ammonia as the nitrogen source	cobB	-	6.3.5.11,6.3.5.9	ko:K02224	ko00860,ko01100,ko01120,map00860,map01100,map01120	-	R05224,R05815	RC00010,RC01301	ko00000,ko00001,ko01000	-	-	-	AAA_26,CbiA,GATase_3
SX3_k127_2452924_7	1297865.APJD01000005_gene3929	4.807e-142	454.0	COG0007@1|root,COG0007@2|Bacteria,1MUI0@1224|Proteobacteria,2TRJC@28211|Alphaproteobacteria,3JRRB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Tetrapyrrole (Corrin/Porphyrin) Methylases	cobA	-	1.3.1.76,2.1.1.107,4.99.1.4	ko:K02302,ko:K02303	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02864,R03194,R03947	RC00003,RC00871,RC01012,RC01034	ko00000,ko00001,ko00002,ko01000	-	-	-	CysG_dimeriser,NAD_binding_7,Sirohm_synth_M,TP_methylase
SX3_k127_2452924_9	1297865.APJD01000005_gene3930	4.04e-108	353.0	COG2243@1|root,COG2243@2|Bacteria,1MXWZ@1224|Proteobacteria,2TUI6@28211|Alphaproteobacteria,3JS40@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Tetrapyrrole (Corrin/Porphyrin) Methylases	cobF	-	2.1.1.152	ko:K02228	ko00860,ko01100,map00860,map01100	-	R05219	RC00003,RC00923,RC02890	ko00000,ko00001,ko01000	-	-	-	TP_methylase
SX3_k127_2453922_4	1297865.APJD01000007_gene2034	1.591e-114	371.0	COG4638@1|root,COG4638@2|Bacteria,1N6MJ@1224|Proteobacteria,2TVEE@28211|Alphaproteobacteria,3JUWN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	1.14.12.1	ko:K00479,ko:K16319	ko00627,ko01120,map00627,map01120	M00637	R00823,R00825	RC00192	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,Ring_hydroxyl_A
SX3_k127_2453922_5	1297865.APJD01000007_gene2033	6.722e-99	329.0	2F9JX@1|root,341W6@2|Bacteria,1NF2U@1224|Proteobacteria,2UQPW@28211|Alphaproteobacteria,3K2CE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2453922_3	1297865.APJD01000007_gene2032	4.672e-221	696.0	COG3173@1|root,COG3173@2|Bacteria,1MWAK@1224|Proteobacteria,2U36X@28211|Alphaproteobacteria,3K2X2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phosphotransferase enzyme family	-	-	-	-	-	-	-	-	-	-	-	-	APH
SX3_k127_2453922_0	1297865.APJD01000007_gene2031	0.0	1065.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3K3JX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_2453922_1	1297865.APJD01000007_gene2030	1.37e-271	837.0	COG0683@1|root,COG0683@2|Bacteria,1NTMN@1224|Proteobacteria,2UQUJ@28211|Alphaproteobacteria,3K38C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_2453922_2	1297865.APJD01000007_gene2029	8.565e-257	791.0	2BYTM@1|root,2ZA70@2|Bacteria,1R3K3@1224|Proteobacteria,2U03V@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2453922_6	1297865.APJD01000007_gene2028	6.714e-05	55.0	COG1946@1|root,COG1946@2|Bacteria,1RJ64@1224|Proteobacteria,2UR6T@28211|Alphaproteobacteria,3K35H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA thioesterase	-	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
SX3_k127_2463653_1	1297865.APJD01000020_gene55	7.466e-145	461.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JQP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_2463653_0	1297865.APJD01000020_gene56	3.544e-283	871.0	COG0112@1|root,COG0112@2|Bacteria,1MUIS@1224|Proteobacteria,2TQKT@28211|Alphaproteobacteria,3JTRF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism	glyA	-	2.1.2.1	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	M00140,M00141,M00346,M00532	R00945,R09099	RC00022,RC00112,RC01583,RC02958	ko00000,ko00001,ko00002,ko01000	-	-	-	SHMT
SX3_k127_2463653_2	398525.KB900701_gene5354	1.167e-93	308.0	COG1327@1|root,COG1327@2|Bacteria,1RE7V@1224|Proteobacteria,2U75W@28211|Alphaproteobacteria,3JVH1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	nrdR	-	-	ko:K07738	-	-	-	-	ko00000,ko03000	-	-	-	ATP-cone
SX3_k127_2463653_3	1230476.C207_04952	9.055e-12	66.0	COG0117@1|root,COG1985@1|root,COG0117@2|Bacteria,COG1985@2|Bacteria,1MUWT@1224|Proteobacteria,2TR70@28211|Alphaproteobacteria,3JR4M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate	ribD	-	1.1.1.193,3.5.4.26	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	M00125	R03458,R03459	RC00204,RC00933	ko00000,ko00001,ko00002,ko01000	-	-	-	RibD_C,dCMP_cyt_deam_1
SX3_k127_2475430_1	1297865.APJD01000003_gene6272	6.78e-50	177.0	COG2141@1|root,COG2141@2|Bacteria,1MX64@1224|Proteobacteria,2TT8C@28211|Alphaproteobacteria,3JSF0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_04750	-	1.14.13.162	ko:K21731	-	-	-	-	ko00000,ko01000	-	-	-	Bac_luciferase
SX3_k127_2475430_0	1230476.C207_05154	0.0	1424.0	COG0668@1|root,COG0668@2|Bacteria,1MY0I@1224|Proteobacteria,2TSIN@28211|Alphaproteobacteria,3JRB0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mechanosensitive ion channel	-	-	-	ko:K22044	-	-	-	-	ko00000,ko02000	1.A.23.3	-	-	MS_channel
SX3_k127_2475430_2	1297865.APJD01000003_gene6270	6.069e-39	146.0	COG1222@1|root,COG2127@1|root,COG1222@2|Bacteria,COG2127@2|Bacteria,1R4U1@1224|Proteobacteria,2TRGA@28211|Alphaproteobacteria,3JQS6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATP-dependent Clp protease adaptor protein ClpS	-	-	-	-	-	-	-	-	-	-	-	-	AAA,ClpS
SX3_k127_2488945_8	1297865.APJD01000007_gene2071	8.032e-165	518.0	COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2TX27@28211|Alphaproteobacteria,3JUJE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	ko:K09969	ko02010,map02010	M00232	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	SBP_bac_3
SX3_k127_2488945_2	1297865.APJD01000007_gene2072	1.992e-291	909.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,3JTP1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Aminotransferase class-III	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_3
SX3_k127_2488945_7	1230476.C207_00481	4.255e-168	530.0	COG1737@1|root,COG1737@2|Bacteria,1MW2B@1224|Proteobacteria,2U0K3@28211|Alphaproteobacteria,3JUSJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	SIS domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_6,SIS
SX3_k127_2488945_4	1297865.APJD01000007_gene2074	1.159e-247	767.0	COG4597@1|root,COG4597@2|Bacteria,1MV0S@1224|Proteobacteria,2TR7G@28211|Alphaproteobacteria,3JTDW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K09970	ko02010,map02010	M00232	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	BPD_transp_1
SX3_k127_2488945_5	1297865.APJD01000007_gene2075	4.681e-242	749.0	COG0765@1|root,COG0765@2|Bacteria,1MV3I@1224|Proteobacteria,2TR9C@28211|Alphaproteobacteria,3JRVD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	aapM	-	-	ko:K09971	ko02010,map02010	M00232	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	BPD_transp_1
SX3_k127_2488945_6	1297865.APJD01000007_gene2076	2.061e-170	536.0	COG2186@1|root,COG2186@2|Bacteria,1MXN5@1224|Proteobacteria,2U1II@28211|Alphaproteobacteria,3JVTS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_2488945_1	1297865.APJD01000007_gene2077	4.655e-294	919.0	COG0154@1|root,COG0154@2|Bacteria,1MUKC@1224|Proteobacteria,2TTUD@28211|Alphaproteobacteria,3JWRQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	-	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_2488945_0	1297865.APJD01000007_gene2078	3.987e-313	960.0	COG0154@1|root,COG0154@2|Bacteria,1MUKC@1224|Proteobacteria,2TTUD@28211|Alphaproteobacteria,3JQUA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	hormone biosynthetic process	bam	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_2488945_3	1297865.APJD01000007_gene2079	1.156e-259	801.0	COG0683@1|root,COG0683@2|Bacteria,1R7E7@1224|Proteobacteria,2U4XG@28211|Alphaproteobacteria,3JX5A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_2489314_32	1038862.KB893851_gene6315	8.317e-39	145.0	COG0818@1|root,COG0818@2|Bacteria,1MZ3Q@1224|Proteobacteria,2U9IE@28211|Alphaproteobacteria,3JYQQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Recycling of diacylglycerol produced during the turnover of membrane phospholipid	dgkA	-	2.7.1.107	ko:K00901	ko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231	-	R02240	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	DAGK_prokar
SX3_k127_2489314_2	1297865.APJD01000014_gene649	0.0	1165.0	COG0171@1|root,COG0388@1|root,COG0171@2|Bacteria,COG0388@2|Bacteria,1MU9U@1224|Proteobacteria,2TRAU@28211|Alphaproteobacteria,3JSE7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	nadE	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.1.5,6.3.5.1	ko:K01916,ko:K01950	ko00760,ko01100,map00760,map01100	M00115	R00189,R00257	RC00010,RC00100	ko00000,ko00001,ko00002,ko01000	-	-	-	CN_hydrolase,NAD_synthase
SX3_k127_2489314_11	1297865.APJD01000014_gene648	4.006e-229	713.0	2CKRE@1|root,32SCW@2|Bacteria,1MWRU@1224|Proteobacteria,2TSRM@28211|Alphaproteobacteria,3JQVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2865)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2865
SX3_k127_2489314_29	1297865.APJD01000014_gene647	2.294e-62	215.0	2EAPA@1|root,334RR@2|Bacteria,1N1K3@1224|Proteobacteria,2UDBG@28211|Alphaproteobacteria,3K0EP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2489314_6	1297865.APJD01000014_gene646	2.847e-315	965.0	COG0215@1|root,COG0215@2|Bacteria,1MV8H@1224|Proteobacteria,2TQQ1@28211|Alphaproteobacteria,3JSIG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the class-I aminoacyl-tRNA synthetase family	cysS	GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576	6.1.1.16	ko:K01883	ko00970,map00970	M00359,M00360	R03650	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DALR_2,tRNA-synt_1e
SX3_k127_2489314_23	1297865.APJD01000014_gene645	8.295e-98	332.0	COG0454@1|root,COG0454@2|Bacteria,1QUD7@1224|Proteobacteria,2U5MN@28211|Alphaproteobacteria,3JV1B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	ko:K03830	-	-	-	-	ko00000,ko01000	-	-	-	Acetyltransf_10
SX3_k127_2489314_4	1297865.APJD01000014_gene644	0.0	1067.0	COG0119@1|root,COG0119@2|Bacteria,1MUNQ@1224|Proteobacteria,2TSK4@28211|Alphaproteobacteria,3JUJJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the alpha-IPM synthase homocitrate synthase family	MA20_26350	-	2.3.3.13	ko:K01649	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230	M00432	R01213	RC00004,RC00470,RC02754	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like,LeuA_dimer
SX3_k127_2489314_26	1297865.APJD01000014_gene643	9.087e-81	270.0	COG0346@1|root,COG0346@2|Bacteria,1RH4D@1224|Proteobacteria,2U7GX@28211|Alphaproteobacteria,3JYQ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_2489314_20	1230476.C207_07017	1.305e-138	441.0	COG1611@1|root,COG1611@2|Bacteria,1RD59@1224|Proteobacteria,2U5DP@28211|Alphaproteobacteria,3JU4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the LOG family	yvdD	-	3.2.2.10	ko:K06966	ko00230,ko00240,map00230,map00240	-	R00182,R00510	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	Lysine_decarbox
SX3_k127_2489314_0	1297865.APJD01000014_gene641	0.0	1294.0	COG5265@1|root,COG5265@2|Bacteria,1NSKS@1224|Proteobacteria,2UQAG@28211|Alphaproteobacteria,3JSVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter	atm1	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_2489314_19	1297865.APJD01000014_gene640	3.42e-150	476.0	COG0688@1|root,COG0688@2|Bacteria,1MW45@1224|Proteobacteria,2TRMG@28211|Alphaproteobacteria,3JRU2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer)	psd	-	4.1.1.65	ko:K01613	ko00564,ko01100,ko01110,map00564,map01100,map01110	M00093	R02055	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	PS_Dcarbxylase
SX3_k127_2489314_14	1297865.APJD01000014_gene639	5.312e-181	574.0	COG1183@1|root,COG1183@2|Bacteria,1MWD9@1224|Proteobacteria,2TUF7@28211|Alphaproteobacteria,3JSE1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	pssA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.8.8	ko:K17103	ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110	M00093	R01800	RC00002,RC00017,RC02795	ko00000,ko00001,ko00002,ko01000	-	-	-	CDP-OH_P_tran_2,CDP-OH_P_transf
SX3_k127_2489314_18	1230476.C207_06870	1.337e-150	481.0	COG0684@1|root,COG0684@2|Bacteria,1MUES@1224|Proteobacteria,2U0IC@28211|Alphaproteobacteria,3JTIV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Aldolase/RraA	MA20_26380	-	-	-	-	-	-	-	-	-	-	-	RraA-like
SX3_k127_2489314_22	1297865.APJD01000014_gene637	2.091e-117	379.0	COG0861@1|root,COG0861@2|Bacteria,1PN8B@1224|Proteobacteria,2TUV5@28211|Alphaproteobacteria,3JTV7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Integral membrane protein TerC family	terC	-	-	-	-	-	-	-	-	-	-	-	TerC
SX3_k127_2489314_30	172088.AUGA01000003_gene5553	1.818e-48	175.0	29F7S@1|root,3025F@2|Bacteria,1NBFS@1224|Proteobacteria,2UISV@28211|Alphaproteobacteria,3K16J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2489314_17	1297865.APJD01000014_gene635	6.287e-166	524.0	COG1028@1|root,COG1028@2|Bacteria,1P9R4@1224|Proteobacteria,2TUAM@28211|Alphaproteobacteria,3K6BW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_2489314_12	1297865.APJD01000014_gene634	1.876e-205	643.0	COG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria,3JSAK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_2489314_1	1297865.APJD01000014_gene633	0.0	1229.0	COG0318@1|root,COG0318@2|Bacteria,1MWSD@1224|Proteobacteria,2TU6Y@28211|Alphaproteobacteria,3JRS1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_2489314_13	1297865.APJD01000014_gene632	3.886e-196	619.0	2ECS2@1|root,336PQ@2|Bacteria,1NN0C@1224|Proteobacteria,2TVR8@28211|Alphaproteobacteria,3JUA9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Evidence 4 Homologs of previously reported genes of	MA20_23125	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2489314_33	1297865.APJD01000014_gene631	6.548e-38	147.0	COG0236@1|root,COG0236@2|Bacteria,1MZUU@1224|Proteobacteria,2U9S0@28211|Alphaproteobacteria,3K021@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Phosphopantetheine attachment site	MA20_06650	-	-	-	-	-	-	-	-	-	-	-	PP-binding
SX3_k127_2489314_7	1297865.APJD01000014_gene630	9.913e-285	876.0	COG0318@1|root,COG0318@2|Bacteria,1R3S7@1224|Proteobacteria,2TQPW@28211|Alphaproteobacteria,3JTXP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_06645	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_2489314_28	1134912.AJTV01000029_gene2084	9.382e-76	261.0	COG1028@1|root,COG1028@2|Bacteria,1PKAZ@1224|Proteobacteria,2TS5J@28211|Alphaproteobacteria,3718V@31993|Methylocystaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_06640	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short,adh_short_C2
SX3_k127_2489314_15	1297865.APJD01000014_gene628	1.075e-176	556.0	COG0697@1|root,COG0697@2|Bacteria,1RI87@1224|Proteobacteria,2UAJW@28211|Alphaproteobacteria,3JW3Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_28970	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_2489314_21	1297865.APJD01000014_gene627	4.132e-133	424.0	2BZNP@1|root,30717@2|Bacteria,1REWN@1224|Proteobacteria,2U7X0@28211|Alphaproteobacteria,3JV83@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2889)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2889
SX3_k127_2489314_5	1297865.APJD01000014_gene626	0.0	1045.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JTV9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_2489314_24	1298867.AUES01000026_gene3051	4.67e-92	310.0	COG1309@1|root,COG1309@2|Bacteria,1MY9K@1224|Proteobacteria,2U3PH@28211|Alphaproteobacteria,3JXKW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_2489314_9	1297865.APJD01000014_gene624	3.177e-260	802.0	COG0183@1|root,COG0183@2|Bacteria,1MU8C@1224|Proteobacteria,2TS6P@28211|Alphaproteobacteria,3JQWY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Thiolase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_2489314_25	1297865.APJD01000014_gene623	8.662e-92	302.0	COG2030@1|root,COG2030@2|Bacteria,1RJ2Z@1224|Proteobacteria,2U5QB@28211|Alphaproteobacteria,3JY70@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	N-terminal half of MaoC dehydratase	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydrat_N
SX3_k127_2489314_27	1297865.APJD01000014_gene622	1.459e-80	277.0	COG2030@1|root,COG2030@2|Bacteria,1RD6F@1224|Proteobacteria,2UC91@28211|Alphaproteobacteria,3JZ3D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	MaoC like domain	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
SX3_k127_2489314_16	1297865.APJD01000014_gene621	1.855e-170	536.0	COG1028@1|root,COG1028@2|Bacteria,1MXFZ@1224|Proteobacteria,2TQZ9@28211|Alphaproteobacteria,3JWQH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_2489314_10	1230476.C207_06853	5.159e-243	751.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3JSF6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_40160	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_2489314_3	1297865.APJD01000014_gene619	0.0	1126.0	COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2TSB1@28211|Alphaproteobacteria,3JTWC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, central domain	MA20_00650	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_2489314_8	1297865.APJD01000014_gene618	3.448e-275	865.0	COG0665@1|root,COG0665@2|Bacteria,1MVIZ@1224|Proteobacteria,2TSQI@28211|Alphaproteobacteria,3JSP6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	MA20_00655	-	1.4.5.1	ko:K00285	ko00360,map00360	-	R01374,R09493	RC00006,RC00025	ko00000,ko00001,ko01000	-	-	-	DAO
SX3_k127_2489314_31	1297865.APJD01000014_gene617	2.069e-41	152.0	COG4591@1|root,COG4591@2|Bacteria,1MVV7@1224|Proteobacteria,2U46C@28211|Alphaproteobacteria,3JXZX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	MacB-like periplasmic core domain	-	-	-	ko:K09808	ko02010,map02010	M00255	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.125	-	-	FtsX,MacB_PCD
SX3_k127_2493456_0	1297865.APJD01000015_gene3468	1.657e-314	963.0	COG2010@1|root,COG2010@2|Bacteria,1MVYK@1224|Proteobacteria,2U18V@28211|Alphaproteobacteria,3JRFQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2493456_9	1297865.APJD01000015_gene3469	4.207e-137	439.0	COG3571@1|root,COG3571@2|Bacteria,1RD20@1224|Proteobacteria,2U1XJ@28211|Alphaproteobacteria,3JSHJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	hydrolase of the alpha beta-hydrolase fold	-	-	-	ko:K07020	-	-	-	-	ko00000	-	-	-	Abhydrolase_6,DLH,Thioesterase
SX3_k127_2493456_8	1297865.APJD01000015_gene3470	1.365e-142	454.0	COG4126@1|root,COG4126@2|Bacteria,1MVNB@1224|Proteobacteria,2U28G@28211|Alphaproteobacteria,3JVNQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Asp/Glu/Hydantoin racemase	MA20_32210	GO:0003674,GO:0003824,GO:0016853,GO:0016854,GO:0036348	5.1.99.3	ko:K16841	ko00230,ko01120,map00230,map01120	-	R03925	RC01027	ko00000,ko00001,ko01000	-	-	-	Asp_Glu_race
SX3_k127_2493456_7	1297865.APJD01000015_gene3471	3.379e-159	503.0	COG4221@1|root,COG4221@2|Bacteria,1MW86@1224|Proteobacteria,2TSEM@28211|Alphaproteobacteria,3JWSJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_2493456_3	1297865.APJD01000015_gene3472	1.648e-207	646.0	COG1893@1|root,COG1893@2|Bacteria,1MVZ1@1224|Proteobacteria,2TRJN@28211|Alphaproteobacteria,3JS2F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Ketopantoate reductase PanE/ApbA C terminal	MA20_40170	-	1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000	-	-	-	ApbA,ApbA_C
SX3_k127_2493456_5	1297865.APJD01000015_gene3473	2.215e-167	527.0	COG1024@1|root,COG1024@2|Bacteria,1MVEC@1224|Proteobacteria,2TRPS@28211|Alphaproteobacteria,3JREH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_40175	-	4.2.1.18,4.2.1.57	ko:K13766,ko:K13779	ko00280,ko00281,ko01100,map00280,map00281,map01100	M00036	R02085,R03493	RC00941,RC02416	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_2493456_11	1297865.APJD01000015_gene3474	5.525e-41	166.0	2ADZV@1|root,313SE@2|Bacteria,1N23K@1224|Proteobacteria,2UCQC@28211|Alphaproteobacteria,3K0N5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2493456_4	1297865.APJD01000015_gene3475	7.942e-188	587.0	COG0583@1|root,COG0583@2|Bacteria,1PJWF@1224|Proteobacteria,2U1KJ@28211|Alphaproteobacteria,3JWKX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2493456_1	1297865.APJD01000015_gene3476	8.105e-298	915.0	COG1249@1|root,COG1249@2|Bacteria,1QW6X@1224|Proteobacteria,2TWQI@28211|Alphaproteobacteria,3JR1X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD dependent oxidoreductase	MA20_40205	-	-	-	-	-	-	-	-	-	-	-	FAD_oxidored
SX3_k127_2493456_2	1297865.APJD01000015_gene3477	9.695e-213	664.0	COG0715@1|root,COG0715@2|Bacteria,1NF3S@1224|Proteobacteria,2TREQ@28211|Alphaproteobacteria,3JVU0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	MA20_40210	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
SX3_k127_2493456_10	1380394.JADL01000008_gene3647	8.101e-100	331.0	COG1116@1|root,COG1116@2|Bacteria,1MY5D@1224|Proteobacteria,2TQKX@28211|Alphaproteobacteria,2JS17@204441|Rhodospirillales	204441|Rhodospirillales	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_2493456_6	1297865.APJD01000015_gene3479	3.219e-163	515.0	COG0600@1|root,COG0600@2|Bacteria,1MWS0@1224|Proteobacteria,2VET7@28211|Alphaproteobacteria,3JT5Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_40220	-	-	ko:K02050,ko:K15554	ko00920,ko02010,map00920,map02010	M00188,M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16,3.A.1.17,3.A.1.17.2	-	-	BPD_transp_1
SX3_k127_2493456_12	1297865.APJD01000075_gene2642	1.907e-24	104.0	COG2826@1|root,COG2826@2|Bacteria,1PP49@1224|Proteobacteria,2TRVA@28211|Alphaproteobacteria,3JZ7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_38,rve
SX3_k127_2502862_6	1297865.APJD01000005_gene3640	3.161e-89	304.0	COG2755@1|root,COG2755@2|Bacteria,1RC1Q@1224|Proteobacteria,2U6XX@28211|Alphaproteobacteria,3JYMT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GDSL-like Lipase/Acylhydrolase family	-	-	3.1.1.5	ko:K10804	ko01040,map01040	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	Lipase_GDSL_2
SX3_k127_2502862_1	1297865.APJD01000005_gene3639	0.0	1025.0	COG2721@1|root,COG2721@2|Bacteria,1MU9V@1224|Proteobacteria,2TTDT@28211|Alphaproteobacteria,3JT6J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	D-galactarate dehydratase / Altronate hydrolase, C terminus	MA20_16205	-	4.2.1.7	ko:K01685	ko00040,ko01100,map00040,map01100	M00631	R01540	RC00543	ko00000,ko00001,ko00002,ko01000	-	-	-	GD_AH_C,SAF
SX3_k127_2502862_4	1297865.APJD01000005_gene3638	1.954e-170	535.0	COG3836@1|root,COG3836@2|Bacteria,1MUSG@1224|Proteobacteria,2TT2W@28211|Alphaproteobacteria,3JVT1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the HpcH HpaI aldolase family	MA20_16210	-	4.1.2.52	ko:K02510	ko00350,ko01120,map00350,map01120	-	R01645,R01647	RC00307,RC00572,RC00574,RC03057	ko00000,ko00001,ko01000	-	-	-	HpcH_HpaI
SX3_k127_2502862_2	1297865.APJD01000005_gene3637	1.597e-235	728.0	COG2055@1|root,COG2055@2|Bacteria,1MWQY@1224|Proteobacteria,2TR37@28211|Alphaproteobacteria,3JT0K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the LDH2 MDH2 oxidoreductase family	-	-	1.1.1.350	ko:K00073,ko:K13574	ko00230,ko01120,map00230,map01120	-	R02935,R02936	RC00169	ko00000,ko00001,ko01000	-	-	-	Ldh_2
SX3_k127_2502862_5	1297865.APJD01000005_gene3636	3.804e-146	467.0	COG0410@1|root,COG0410@2|Bacteria,1Q0CV@1224|Proteobacteria,2TTSP@28211|Alphaproteobacteria,3JVJ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_2502862_0	1297865.APJD01000005_gene3635	0.0	1153.0	COG0411@1|root,COG4177@1|root,COG0411@2|Bacteria,COG4177@2|Bacteria,1MUTY@1224|Proteobacteria,2TQVU@28211|Alphaproteobacteria,3JSQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01995,ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C,BPD_transp_2
SX3_k127_2502862_3	1297865.APJD01000005_gene3634	2.411e-172	542.0	COG0559@1|root,COG0559@2|Bacteria,1MU25@1224|Proteobacteria,2TSDS@28211|Alphaproteobacteria,3JWTE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_2505481_2	1297865.APJD01000001_gene5908	1.196e-314	963.0	COG0739@1|root,COG0739@2|Bacteria,1QGHU@1224|Proteobacteria,2TUF9@28211|Alphaproteobacteria,3JR95@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
SX3_k127_2505481_12	1297865.APJD01000001_gene5909	3.674e-81	270.0	COG1942@1|root,COG1942@2|Bacteria,1RKUX@1224|Proteobacteria,2U9KZ@28211|Alphaproteobacteria,3K3ST@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tautomerase enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Tautomerase_2
SX3_k127_2505481_1	1297865.APJD01000001_gene5910	0.0	1199.0	COG0790@1|root,COG4249@1|root,COG0790@2|Bacteria,COG4249@2|Bacteria,1MXFD@1224|Proteobacteria,2TR94@28211|Alphaproteobacteria,3JU08@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,Sel1,TPR_19
SX3_k127_2505481_14	1230476.C207_01392	2.287e-76	257.0	COG1605@1|root,COG1605@2|Bacteria,1N6UE@1224|Proteobacteria,2V4R0@28211|Alphaproteobacteria,3JZ2T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Chorismate mutase type II	-	-	4.2.99.21	ko:K04782	ko01053,ko01110,ko01130,map01053,map01110,map01130	-	R06602	RC01549,RC02148	ko00000,ko00001,ko01000	-	-	-	CM_2
SX3_k127_2505481_6	1230476.C207_01391	3.261e-172	543.0	COG0329@1|root,COG0329@2|Bacteria,1MU77@1224|Proteobacteria,2TTNF@28211|Alphaproteobacteria,3JW0K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EM	Dihydrodipicolinate synthetase family	-	-	4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000	-	-	-	DHDPS
SX3_k127_2505481_11	172088.AUGA01000042_gene4761	2e-90	299.0	COG1917@1|root,COG1917@2|Bacteria,1RB1D@1224|Proteobacteria,2TTYH@28211|Alphaproteobacteria,3JU91@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_2505481_10	1297865.APJD01000001_gene5914	5.7e-99	323.0	COG2128@1|root,COG2128@2|Bacteria,1RD1K@1224|Proteobacteria,2TU0H@28211|Alphaproteobacteria,3JUEJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	MA20_30475	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_2505481_9	1297865.APJD01000001_gene5915	5.598e-115	375.0	COG1846@1|root,COG1846@2|Bacteria,1RJ2M@1224|Proteobacteria,2U136@28211|Alphaproteobacteria,3JWAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_2505481_3	1230476.C207_01387	5.754e-266	824.0	COG2951@1|root,COG3409@1|root,COG2951@2|Bacteria,COG3409@2|Bacteria,1MUZ3@1224|Proteobacteria,2TRP0@28211|Alphaproteobacteria,3JTXK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	mltB	-	-	ko:K00786,ko:K08305	-	-	-	-	ko00000,ko01000,ko01011	-	GH103	-	PG_binding_1,SLT_2
SX3_k127_2505481_7	1297865.APJD01000001_gene5917	2.611e-167	527.0	COG1028@1|root,COG1028@2|Bacteria,1MUPX@1224|Proteobacteria,2TT6C@28211|Alphaproteobacteria,3JS1C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_30510	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_2505481_0	1297865.APJD01000001_gene5918	0.0	1203.0	COG0608@1|root,COG0608@2|Bacteria,1MU1M@1224|Proteobacteria,2TRZQ@28211|Alphaproteobacteria,3JRYX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DHH family	recJ	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008297,GO:0008409,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0035312,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0045145,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360	-	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DHH,DHHA1
SX3_k127_2505481_8	1297865.APJD01000001_gene5920	2.415e-161	508.0	COG1011@1|root,COG1011@2|Bacteria,1MU1H@1224|Proteobacteria,2TQVC@28211|Alphaproteobacteria,3JS84@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	MA20_30570	-	3.8.1.2	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05287	RC00697	ko00000,ko00001,ko01000	-	-	-	HAD_2
SX3_k127_2505481_5	1297865.APJD01000001_gene5921	8.232e-212	660.0	COG1494@1|root,COG1494@2|Bacteria,1MUB1@1224|Proteobacteria,2TSPE@28211|Alphaproteobacteria,3JSWJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial fructose-1,6-bisphosphatase, glpX-encoded	glpX	-	3.1.3.11,3.1.3.37	ko:K02446,ko:K11532	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200	M00003,M00165,M00167	R00762,R01845,R04780	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	FBPase_glpX
SX3_k127_2505481_4	1297865.APJD01000001_gene5922	1.951e-239	741.0	COG0460@1|root,COG0460@2|Bacteria,1MUDC@1224|Proteobacteria,2TQWS@28211|Alphaproteobacteria,3JTE6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	homoserine dehydrogenase	hom	GO:0003674,GO:0003824,GO:0004412,GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.3	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	M00017,M00018	R01773,R01775	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	ACT,Homoserine_dh,NAD_binding_3
SX3_k127_2507060_11	1297865.APJD01000028_gene5193	2.401e-56	196.0	COG0730@1|root,COG0730@2|Bacteria,1NAFA@1224|Proteobacteria,2U1B5@28211|Alphaproteobacteria,3JQPV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfite exporter TauE/SafE	MA20_24460	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_2507060_5	1297865.APJD01000028_gene5192	6.844e-207	644.0	COG1234@1|root,COG1234@2|Bacteria,1R64Z@1224|Proteobacteria,2TU6T@28211|Alphaproteobacteria,3JX4C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Beta-lactamase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_2
SX3_k127_2507060_3	1297865.APJD01000028_gene5191	1.351e-291	898.0	COG1231@1|root,COG1231@2|Bacteria,1MXYC@1224|Proteobacteria,2TVDF@28211|Alphaproteobacteria,3JUJ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Flavin containing amine oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	Amino_oxidase
SX3_k127_2507060_7	1297865.APJD01000028_gene5190	2.658e-193	603.0	28JXP@1|root,2Z9N4@2|Bacteria,1MXG4@1224|Proteobacteria,2TSXI@28211|Alphaproteobacteria,3JSBT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	MA20_24470	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C92
SX3_k127_2507060_1	1297865.APJD01000028_gene5189	0.0	1077.0	COG1807@1|root,COG1807@2|Bacteria,1QIUU@1224|Proteobacteria,2TWT1@28211|Alphaproteobacteria,3JTS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	PMT_2
SX3_k127_2507060_0	1297865.APJD01000028_gene5188	0.0	1420.0	COG4206@1|root,COG4206@2|Bacteria,1N71E@1224|Proteobacteria,2TU7B@28211|Alphaproteobacteria,3JVXG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
SX3_k127_2507060_10	1297865.APJD01000028_gene5187	4.052e-90	297.0	COG0864@1|root,COG0864@2|Bacteria,1RK4R@1224|Proteobacteria,2U9KJ@28211|Alphaproteobacteria,3JWZM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	nikR	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	ko:K07722	-	-	-	-	ko00000,ko03000	-	-	-	NikR_C,RHH_1
SX3_k127_2507060_6	1297865.APJD01000028_gene5186	1.856e-196	615.0	COG0119@1|root,COG0119@2|Bacteria,1MUMX@1224|Proteobacteria,2TT1R@28211|Alphaproteobacteria,3JWVK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	HMGL-like	-	-	4.1.3.4	ko:K01640	ko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146	M00036,M00088	R01360,R08090	RC00502,RC00503,RC01118,RC01946	ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like
SX3_k127_2507060_4	1297865.APJD01000028_gene5185	8.166e-263	810.0	COG1804@1|root,COG1804@2|Bacteria,1MU5U@1224|Proteobacteria,2TRIZ@28211|Alphaproteobacteria,3JQU6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_2507060_8	1297865.APJD01000028_gene5184	1.693e-190	595.0	COG0583@1|root,COG0583@2|Bacteria,1MXR1@1224|Proteobacteria,2TUU1@28211|Alphaproteobacteria,3JQTH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	ko:K19338	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_2507060_2	1297865.APJD01000028_gene5183	3.043e-300	924.0	COG0477@1|root,COG0477@2|Bacteria,1MXBV@1224|Proteobacteria,2TWZG@28211|Alphaproteobacteria,3JVBD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	ko:K08369	-	-	-	-	ko00000,ko02000	2.A.1	-	-	Sugar_tr
SX3_k127_2507060_9	1297865.APJD01000028_gene5182	3.716e-152	483.0	COG2981@1|root,COG2981@2|Bacteria,1MWAA@1224|Proteobacteria,2TT6E@28211|Alphaproteobacteria,3JT5R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Etoposide-induced protein 2.4 (EI24)	MA20_24505	-	-	ko:K06203	-	-	-	-	ko00000	-	-	-	EI24
SX3_k127_2507060_12	1297865.APJD01000028_gene5181	7.507e-47	168.0	COG0477@1|root,COG0477@2|Bacteria,1QTUX@1224|Proteobacteria,2TTN1@28211|Alphaproteobacteria,3JTZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
SX3_k127_2508457_31	1297865.APJD01000003_gene6243	1.567e-10	65.0	COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2TR96@28211|Alphaproteobacteria,3JWZ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.48	ko:K00666,ko:K02182	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_2508457_11	1297865.APJD01000003_gene6242	9.161e-230	716.0	COG2207@1|root,COG2207@2|Bacteria,1RH01@1224|Proteobacteria,2U56K@28211|Alphaproteobacteria,3JWFJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Arabinose-binding domain of AraC transcription regulator, N-term	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
SX3_k127_2508457_30	1230476.C207_05184	1.134e-35	135.0	2CBGE@1|root,2ZZAR@2|Bacteria,1MZRP@1224|Proteobacteria,2UDHF@28211|Alphaproteobacteria,3K06Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2508457_28	1297865.APJD01000003_gene6240	4.193e-81	273.0	2EAFU@1|root,334J7@2|Bacteria,1N6IT@1224|Proteobacteria,2UE2S@28211|Alphaproteobacteria,3K08S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2508457_18	1297865.APJD01000003_gene6239	9.448e-184	576.0	COG0741@1|root,COG0741@2|Bacteria,1RD96@1224|Proteobacteria,2U8C8@28211|Alphaproteobacteria,3JVIF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	slt	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_2508457_23	1297865.APJD01000003_gene6238	1.113e-109	356.0	2BY0B@1|root,32R2B@2|Bacteria,1RIX1@1224|Proteobacteria,2U5VZ@28211|Alphaproteobacteria,3JZBV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative bacterial sensory transduction regulator	-	-	-	-	-	-	-	-	-	-	-	-	YbjN
SX3_k127_2508457_14	1297865.APJD01000003_gene6237	1.929e-202	636.0	COG0760@1|root,COG0760@2|Bacteria,1R5NR@1224|Proteobacteria,2TUV1@28211|Alphaproteobacteria,3JSID@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	PPIC-type PPIASE domain	-	-	5.2.1.8	ko:K01802	-	-	-	-	ko00000,ko01000	-	-	-	Rotamase,Rotamase_2
SX3_k127_2508457_25	1297865.APJD01000003_gene6236	2.882e-107	350.0	2CAN2@1|root,32RI0@2|Bacteria,1QW5V@1224|Proteobacteria,2U5R8@28211|Alphaproteobacteria,3JY2K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2508457_2	1297865.APJD01000003_gene6235	0.0	1246.0	COG3746@1|root,COG3746@2|Bacteria,1MV8P@1224|Proteobacteria,2U14X@28211|Alphaproteobacteria,3JRRR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Putative porin	-	-	-	-	-	-	-	-	-	-	-	-	Porin_5
SX3_k127_2508457_19	1297865.APJD01000003_gene6234	3.065e-160	512.0	COG0810@1|root,COG0810@2|Bacteria,1PKC7@1224|Proteobacteria,2U1DP@28211|Alphaproteobacteria,3JV2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	TonB C terminal	-	-	-	-	-	-	-	-	-	-	-	-	TonB_2
SX3_k127_2508457_27	1297865.APJD01000003_gene6233	1.414e-102	341.0	29E0M@1|root,300YK@2|Bacteria,1N5IK@1224|Proteobacteria,2UCHR@28211|Alphaproteobacteria,3K07Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2508457_29	1297865.APJD01000003_gene6232	1.027e-73	256.0	COG0848@1|root,COG0848@2|Bacteria,1RKPI@1224|Proteobacteria,2U5GE@28211|Alphaproteobacteria,3JYAX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Biopolymer transport protein ExbD/TolR	-	-	-	ko:K03559	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	ExbD
SX3_k127_2508457_1	1297865.APJD01000003_gene6231	0.0	1286.0	COG0811@1|root,COG0811@2|Bacteria,1N2RJ@1224|Proteobacteria,2TRZI@28211|Alphaproteobacteria,3JUND@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Domain of unknown function (DUF2341)	-	-	-	ko:K03561	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	DUF2341,Laminin_G_3,MotA_ExbB
SX3_k127_2508457_3	1297865.APJD01000003_gene6230	0.0	1131.0	COG2831@1|root,COG2831@2|Bacteria,1PRBP@1224|Proteobacteria,2U1SN@28211|Alphaproteobacteria,3JR7E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Haemolysin secretion/activation protein ShlB/FhaC/HecB	-	-	-	-	-	-	-	-	-	-	-	-	POTRA_2,ShlB
SX3_k127_2508457_16	1297865.APJD01000003_gene6229	3.943e-194	614.0	COG3712@1|root,COG3712@2|Bacteria,1N4W7@1224|Proteobacteria,2U0N1@28211|Alphaproteobacteria,3JV6V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	PT	Domain of unknown function (DUF4880)	-	-	-	ko:K07165	-	-	-	-	ko00000	-	-	-	DUF4880,DUF4974,FecR
SX3_k127_2508457_26	1230476.C207_05197	1.445e-105	349.0	COG1595@1|root,COG1595@2|Bacteria,1RHYH@1224|Proteobacteria,2UA7M@28211|Alphaproteobacteria,3JXUF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	ECF sigma factor	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_2508457_20	1297865.APJD01000003_gene6228	4.161e-148	471.0	COG0810@1|root,COG0810@2|Bacteria,1RFKM@1224|Proteobacteria,2U7UJ@28211|Alphaproteobacteria,3JYXU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Gram-negative bacterial TonB protein C-terminal	-	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_C
SX3_k127_2508457_22	1297865.APJD01000003_gene6227	4.317e-138	461.0	COG4773@1|root,COG4773@2|Bacteria,1RBQP@1224|Proteobacteria,2U5YA@28211|Alphaproteobacteria,3JY34@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Secretin and TonB N terminus short domain	-	-	-	-	-	-	-	-	-	-	-	-	STN,TonB_2
SX3_k127_2508457_21	1297865.APJD01000003_gene6226	7.286e-146	464.0	COG1309@1|root,COG1309@2|Bacteria,1RCC8@1224|Proteobacteria,2U0CX@28211|Alphaproteobacteria,3JXIK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_2508457_17	1297865.APJD01000003_gene6225	2.393e-191	602.0	COG1172@1|root,COG1172@2|Bacteria,1MX7D@1224|Proteobacteria,2TRYA@28211|Alphaproteobacteria,3JVTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Branched-chain amino acid transport system / permease component	-	-	-	ko:K10440	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	BPD_transp_2
SX3_k127_2508457_13	1230476.C207_05202	1.159e-204	657.0	COG1879@1|root,COG1879@2|Bacteria,1Q3KM@1224|Proteobacteria,2TVRK@28211|Alphaproteobacteria,3JUVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding protein domain	-	-	-	ko:K10439	ko02010,ko02030,map02010,map02030	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	Peripla_BP_4
SX3_k127_2508457_0	1297865.APJD01000003_gene6223	0.0	1434.0	COG1172@1|root,COG3386@1|root,COG1172@2|Bacteria,COG3386@2|Bacteria,1MX7V@1224|Proteobacteria,2U1AZ@28211|Alphaproteobacteria,3JRP9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Strictosidine synthase	-	-	-	ko:K10440	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	BPD_transp_2,SGL,Str_synth
SX3_k127_2508457_10	1297865.APJD01000003_gene6222	6.731e-239	739.0	COG3386@1|root,COG3386@2|Bacteria,1R64I@1224|Proteobacteria,2U1AR@28211|Alphaproteobacteria,3JWWS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PFAM SMP-30 Gluconolaconase	-	-	-	-	-	-	-	-	-	-	-	-	Str_synth
SX3_k127_2508457_4	1297865.APJD01000003_gene6221	1.065e-313	963.0	COG1129@1|root,COG1129@2|Bacteria,1MU22@1224|Proteobacteria,2TQJV@28211|Alphaproteobacteria,3JQYV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	ABC transporter	-	-	3.6.3.17	ko:K02056	-	M00221	-	-	ko00000,ko00002,ko01000,ko02000	3.A.1.2	-	-	ABC_tran
SX3_k127_2508457_12	1297865.APJD01000003_gene6220	8.23e-219	683.0	COG1835@1|root,COG1835@2|Bacteria,1MXVY@1224|Proteobacteria,2U53W@28211|Alphaproteobacteria,3JW9W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_2508457_8	1297865.APJD01000003_gene6219	6.314e-267	823.0	COG2730@1|root,COG2730@2|Bacteria,1QV9C@1224|Proteobacteria,2VEYQ@28211|Alphaproteobacteria,3JTWS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Cellulase (glycosyl hydrolase family 5)	-	-	-	-	-	-	-	-	-	-	-	-	Cellulase
SX3_k127_2508457_15	1297865.APJD01000003_gene6218	2.94e-195	610.0	2DTFW@1|root,33K6G@2|Bacteria,1R8B3@1224|Proteobacteria,2TX35@28211|Alphaproteobacteria,3JRBH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2508457_9	1297865.APJD01000003_gene6217	4.735e-254	800.0	COG0438@1|root,COG0438@2|Bacteria,1MUYN@1224|Proteobacteria,2U21B@28211|Alphaproteobacteria,3JX3F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase 4-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_2508457_7	1297865.APJD01000003_gene6216	4.637e-272	839.0	COG0438@1|root,COG0438@2|Bacteria,1NB81@1224|Proteobacteria,2U3N3@28211|Alphaproteobacteria,3K615@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_2508457_24	1510531.JQJJ01000015_gene3084	4.195e-108	356.0	COG0726@1|root,COG0726@2|Bacteria,1R881@1224|Proteobacteria,2U1Y9@28211|Alphaproteobacteria,3JWF1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Polysaccharide deacetylase	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_2508457_5	1297865.APJD01000003_gene6214	7.527e-281	875.0	COG3307@1|root,COG3307@2|Bacteria,1R5EX@1224|Proteobacteria,2TTQF@28211|Alphaproteobacteria,3JTQN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	O-Antigen ligase	-	-	-	-	-	-	-	-	-	-	-	-	Wzy_C
SX3_k127_2508457_6	1297865.APJD01000003_gene6213	3.745e-277	859.0	COG3206@1|root,COG3206@2|Bacteria,1R43V@1224|Proteobacteria,2U2I8@28211|Alphaproteobacteria,3JT3J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	G-rich domain on putative tyrosine kinase	-	-	-	-	-	-	-	-	-	-	-	-	GNVR,Wzz
SX3_k127_2515261_1	1297865.APJD01000047_gene4830	5.003e-249	771.0	COG0683@1|root,COG0683@2|Bacteria,1MV3Y@1224|Proteobacteria,2TU2B@28211|Alphaproteobacteria,3JQS1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_07775	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_2515261_4	1297865.APJD01000047_gene4829	5.478e-181	567.0	COG0559@1|root,COG0559@2|Bacteria,1NQYP@1224|Proteobacteria,2TSH6@28211|Alphaproteobacteria,3JTVZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_07780	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_2515261_3	1297865.APJD01000047_gene4828	1.041e-197	618.0	COG4177@1|root,COG4177@2|Bacteria,1MYF5@1224|Proteobacteria,2TUHM@28211|Alphaproteobacteria,3JS6G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_07785	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_2515261_6	335659.S23_22940	2.399e-126	434.0	COG0411@1|root,COG0411@2|Bacteria,1MXHT@1224|Proteobacteria,2TSIU@28211|Alphaproteobacteria,3JSQI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	MA20_07790	-	-	ko:K01995,ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_2515261_5	1297865.APJD01000047_gene4826	4.209e-149	475.0	COG0410@1|root,COG0410@2|Bacteria,1MUFR@1224|Proteobacteria,2TUBS@28211|Alphaproteobacteria,3JU4Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	MA20_07795	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_2515261_2	1297865.APJD01000047_gene4825	9.013e-249	769.0	COG0620@1|root,COG0620@2|Bacteria,1MV2Z@1224|Proteobacteria,2TSRH@28211|Alphaproteobacteria,3JTC4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Cobalamin-independent synthase, Catalytic domain	MA20_07800	-	2.1.1.14	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R04405,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000	-	-	-	Meth_synt_2
SX3_k127_2515261_0	1297865.APJD01000047_gene4824	0.0	1108.0	COG0457@1|root,COG4249@1|root,COG0457@2|Bacteria,COG4249@2|Bacteria,1MXFD@1224|Proteobacteria,2TR94@28211|Alphaproteobacteria,3JVC3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,TPR_1,TPR_16,TPR_2,TPR_8
SX3_k127_2515261_7	1297865.APJD01000047_gene4823	1.266e-33	130.0	COG0742@1|root,COG0742@2|Bacteria,1MW6A@1224|Proteobacteria,2TQNI@28211|Alphaproteobacteria,3JR22@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	ribosomal rna small subunit methyltransferase	MA20_07810	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2546169_4	1297865.APJD01000015_gene3449	2.36e-25	107.0	COG0318@1|root,COG0318@2|Bacteria,1MWSD@1224|Proteobacteria,2TU6Y@28211|Alphaproteobacteria,3JUQ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_2546169_0	1297865.APJD01000015_gene3450	1.461e-168	530.0	COG0491@1|root,COG0491@2|Bacteria,1PHBX@1224|Proteobacteria,2TVDN@28211|Alphaproteobacteria,3JS6E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	3.1.1.81	ko:K13075	ko02024,map02024	-	R08970	RC00713	ko00000,ko00001,ko01000	-	-	-	Lactamase_B
SX3_k127_2546169_1	1297865.APJD01000015_gene3451	8.788e-160	508.0	COG1028@1|root,COG1028@2|Bacteria,1PEWK@1224|Proteobacteria,2TV4E@28211|Alphaproteobacteria,3JS5C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_40070	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_2546169_3	1297865.APJD01000015_gene3452	1.131e-53	189.0	COG2261@1|root,COG2261@2|Bacteria,1N72W@1224|Proteobacteria,2UBU4@28211|Alphaproteobacteria,3K02F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Transglycosylase associated protein	MA20_40075	-	-	-	-	-	-	-	-	-	-	-	Transgly_assoc
SX3_k127_2546169_2	172088.AUGA01000006_gene8245	1.657e-109	358.0	COG3753@1|root,COG3753@2|Bacteria,1N7FF@1224|Proteobacteria,2UI50@28211|Alphaproteobacteria,3JQQU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF937)	-	-	-	-	-	-	-	-	-	-	-	-	DUF937
SX3_k127_2546169_5	1297865.APJD01000015_gene3454	8.596e-06	49.0	COG1893@1|root,COG1893@2|Bacteria,1N0M5@1224|Proteobacteria,2TTAN@28211|Alphaproteobacteria,3JQZK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid	-	-	1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000	-	-	-	ApbA,ApbA_C
SX3_k127_2554604_8	1297865.APJD01000036_gene1544	1.828e-31	122.0	COG1309@1|root,COG1309@2|Bacteria,1P5JE@1224|Proteobacteria,2U2E1@28211|Alphaproteobacteria,3JVDJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_2554604_1	1297865.APJD01000036_gene1543	3.858e-276	851.0	COG0683@1|root,COG0683@2|Bacteria,1MWH7@1224|Proteobacteria,2TS8K@28211|Alphaproteobacteria,3JUFA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_2554604_3	1297865.APJD01000036_gene1542	1.492e-188	591.0	COG0559@1|root,COG0559@2|Bacteria,1MVND@1224|Proteobacteria,2TSCF@28211|Alphaproteobacteria,3JW0E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_09930	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_2554604_2	1297865.APJD01000036_gene1541	7.364e-270	831.0	COG4177@1|root,COG4177@2|Bacteria,1MY3V@1224|Proteobacteria,2U0TU@28211|Alphaproteobacteria,3JU2T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_2554604_4	1297865.APJD01000036_gene1540	2.188e-159	504.0	COG0411@1|root,COG0411@2|Bacteria,1MX51@1224|Proteobacteria,2VEYC@28211|Alphaproteobacteria,3JTAQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	MA20_09940	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_2554604_5	1297865.APJD01000036_gene1539	2.726e-140	462.0	COG0410@1|root,COG0410@2|Bacteria,1MUR3@1224|Proteobacteria,2TSWQ@28211|Alphaproteobacteria,3JV3U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	MA20_09945	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_2554604_6	1230476.C207_04341	4.805e-136	437.0	COG2771@1|root,COG2771@2|Bacteria,1N6UR@1224|Proteobacteria,2TXHN@28211|Alphaproteobacteria,3K6H1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Autoinducer binding domain	-	-	-	ko:K07782	ko02020,ko02024,ko02026,map02020,map02024,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	Autoind_bind,GerE
SX3_k127_2554604_0	1297865.APJD01000036_gene1537	0.0	1557.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JVPA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GAF_2,GGDEF
SX3_k127_2554604_7	1297865.APJD01000036_gene1536	3.628e-36	139.0	COG2084@1|root,COG2084@2|Bacteria,1MUGU@1224|Proteobacteria,2TT50@28211|Alphaproteobacteria,3JS6C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	glxR	-	1.1.1.60	ko:K00042	ko00630,ko01100,map00630,map01100	-	R01745,R01747	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_2564815_6	1297865.APJD01000026_gene2584	1.286e-56	199.0	COG3386@1|root,COG3386@2|Bacteria,1RHPS@1224|Proteobacteria,2UBD9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	PFAM SMP-30 Gluconolaconase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2564815_5	1297865.APJD01000026_gene2585	2.205e-185	580.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2U0T5@28211|Alphaproteobacteria,3K5ZZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2564815_3	1297865.APJD01000026_gene2586	5.212e-288	886.0	COG2239@1|root,COG2239@2|Bacteria,1MW24@1224|Proteobacteria,2TRWK@28211|Alphaproteobacteria,3JSGK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Acts as a magnesium transporter	mgtE	GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015693,GO:0030001,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0051179,GO:0051234,GO:0070838,GO:0072511	-	ko:K06213	-	-	-	-	ko00000,ko02000	1.A.26.1	-	-	CBS,MgtE,MgtE_N
SX3_k127_2564815_4	1230476.C207_01030	9.404e-254	783.0	COG0665@1|root,COG0665@2|Bacteria,1Q9VR@1224|Proteobacteria,2U05R@28211|Alphaproteobacteria,3K2RD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DAO
SX3_k127_2564815_2	1230476.C207_01029	3.284e-288	886.0	COG2262@1|root,COG2262@2|Bacteria,1MUA0@1224|Proteobacteria,2TUXJ@28211|Alphaproteobacteria,3JVWE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis	hflX	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018105,GO:0018193,GO:0018209,GO:0019001,GO:0019222,GO:0019538,GO:0019843,GO:0022411,GO:0030554,GO:0031323,GO:0031326,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032790,GO:0032984,GO:0032988,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036211,GO:0036289,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:2000112	-	ko:K03665	-	-	-	-	ko00000,ko03009	-	-	-	GTP-bdg_M,GTP-bdg_N,MMR_HSR1
SX3_k127_2564815_7	1230476.C207_01028	9.219e-49	174.0	COG1923@1|root,COG1923@2|Bacteria,1MZM1@1224|Proteobacteria,2UBTW@28211|Alphaproteobacteria,3JZC3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs	hfq	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006807,GO:0008150,GO:0008152,GO:0009399,GO:0071941,GO:0097159,GO:1901363	-	ko:K03666	ko02024,ko03018,ko05111,map02024,map03018,map05111	-	-	-	ko00000,ko00001,ko03019,ko03036	-	-	-	Hfq
SX3_k127_2564815_1	1297865.APJD01000026_gene2589	1.91e-289	889.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQW2@28211|Alphaproteobacteria,3JT3A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Sigma-54 interaction domain	ntrX	-	-	ko:K13599	ko02020,map02020	M00498	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activat
SX3_k127_2564815_0	1297865.APJD01000026_gene2590	0.0	1163.0	COG5000@1|root,COG5000@2|Bacteria,1MWKZ@1224|Proteobacteria,2TQTB@28211|Alphaproteobacteria,3JT86@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	ntrY	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.13.3	ko:K13598	ko02020,map02020	M00498	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA,PAS,PAS_4
SX3_k127_2581412_2	1297865.APJD01000012_gene1382	1.344e-133	425.0	COG2141@1|root,COG2141@2|Bacteria,1MX64@1224|Proteobacteria,2TT8C@28211|Alphaproteobacteria,3JSF0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_04750	-	1.14.13.162	ko:K21731	-	-	-	-	ko00000,ko01000	-	-	-	Bac_luciferase
SX3_k127_2581412_5	398525.KB900701_gene1166	1.784e-74	251.0	2BTAW@1|root,32NGH@2|Bacteria,1RD0M@1224|Proteobacteria,2U7KV@28211|Alphaproteobacteria,3JYU0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2581412_3	1297865.APJD01000012_gene1384	2.59e-103	339.0	COG1309@1|root,COG1309@2|Bacteria,1Q4KH@1224|Proteobacteria,2U3WX@28211|Alphaproteobacteria,3JRHY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WHG domain	MA20_10330	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
SX3_k127_2581412_6	1297865.APJD01000012_gene1385	1.444e-44	162.0	29Z4V@1|root,30M2J@2|Bacteria,1MZ41@1224|Proteobacteria,2UDYY@28211|Alphaproteobacteria,3K04K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2581412_0	1297865.APJD01000012_gene1386	0.0	2238.0	COG0204@1|root,COG0318@1|root,COG0204@2|Bacteria,COG0318@2|Bacteria,1MWDY@1224|Proteobacteria,2TTGI@28211|Alphaproteobacteria,3JU7A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Phosphate acyltransferases	aas	-	2.3.1.40,6.2.1.20	ko:K05939	ko00071,ko00564,map00071,map00564	-	R01406,R04864	RC00014,RC00039,RC00041	ko00000,ko00001,ko01000	-	-	-	AMP-binding,Acyltransferase,MFS_1
SX3_k127_2581412_1	1297865.APJD01000012_gene1387	0.0	1212.0	COG2072@1|root,COG2072@2|Bacteria,1R8WA@1224|Proteobacteria,2U49W@28211|Alphaproteobacteria,3JQWK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	-	-	-	-	-	-	-	-	-	-	-	-	Pyr_redox_3
SX3_k127_2581412_4	1297865.APJD01000012_gene1388	5.877e-102	332.0	COG0657@1|root,COG0657@2|Bacteria,1NEXK@1224|Proteobacteria,2TU54@28211|Alphaproteobacteria,3JV5R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Carboxylesterase family	-	-	-	ko:K01066	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_3
SX3_k127_2588438_3	1297865.APJD01000019_gene3156	5.46e-186	584.0	COG1028@1|root,COG1028@2|Bacteria,1MUSQ@1224|Proteobacteria,2TTJC@28211|Alphaproteobacteria,3JV7F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	ko:K13775	ko00281,map00281	-	R08087,R08096,R10125,R10126	RC00080,RC00087	ko00000,ko00001	-	-	-	adh_short,adh_short_C2
SX3_k127_2588438_11	1297865.APJD01000019_gene3155	9.187e-66	225.0	COG3860@1|root,COG3860@2|Bacteria,1N8HB@1224|Proteobacteria,2UGZ1@28211|Alphaproteobacteria,3JZJI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2588438_10	1297865.APJD01000019_gene3154	7.664e-88	290.0	COG5470@1|root,COG5470@2|Bacteria,1MWI7@1224|Proteobacteria,2U0S6@28211|Alphaproteobacteria,3JYCC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1330)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1330
SX3_k127_2588438_4	1297865.APJD01000019_gene3153	1.947e-142	455.0	COG0625@1|root,COG0625@2|Bacteria,1MXHH@1224|Proteobacteria,2TVGY@28211|Alphaproteobacteria,3JV1Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the GST superfamily	MA20_25055	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_C_3,GST_N
SX3_k127_2588438_7	1297865.APJD01000019_gene3152	1.435e-121	393.0	COG3644@1|root,COG3644@2|Bacteria,1RK12@1224|Proteobacteria,2U9IH@28211|Alphaproteobacteria,3JU7P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2239)	-	-	-	ko:K09965	-	-	-	-	ko00000	-	-	-	DUF2239
SX3_k127_2588438_1	1297865.APJD01000019_gene3151	8.132e-256	793.0	COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,2U34G@28211|Alphaproteobacteria,3JVWK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MatE	-	-	-	-	-	-	-	-	-	-	-	-	MatE
SX3_k127_2588438_5	1297865.APJD01000019_gene3150	4.196e-128	411.0	COG3917@1|root,COG3917@2|Bacteria,1RA6I@1224|Proteobacteria,2U5JB@28211|Alphaproteobacteria,3JRJN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	DSBA-like thioredoxin domain	MA20_25040	-	5.99.1.4	ko:K14584	ko00626,ko01100,ko01120,ko01220,map00626,map01100,map01120,map01220	M00534	R05137	RC03084	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	DSBA
SX3_k127_2588438_2	1297865.APJD01000019_gene3149	1.869e-193	605.0	COG1893@1|root,COG1893@2|Bacteria,1MX5M@1224|Proteobacteria,2TVRD@28211|Alphaproteobacteria,3JTNN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid	MA20_25035	-	1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000	-	-	-	ApbA,ApbA_C
SX3_k127_2588438_8	1297865.APJD01000019_gene3148	7.636e-119	382.0	COG2863@1|root,COG2863@2|Bacteria,1N7W9@1224|Proteobacteria,2TSFV@28211|Alphaproteobacteria,3JRR1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	ko:K17230	ko00920,ko01120,map00920,map01120	-	R09499	-	ko00000,ko00001	-	-	-	Cytochrom_C,Cytochrome_CBB3
SX3_k127_2588438_0	1297865.APJD01000019_gene3147	5.575e-294	901.0	COG2133@1|root,COG2133@2|Bacteria,1MVK5@1224|Proteobacteria,2TRN9@28211|Alphaproteobacteria,3JTUJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glucose / Sorbosone dehydrogenase	MA20_25025	-	-	-	-	-	-	-	-	-	-	-	GSDH,PBP
SX3_k127_2588438_6	1297865.APJD01000019_gene3146	1.648e-127	409.0	2CKRE@1|root,30UM7@2|Bacteria,1R3YV@1224|Proteobacteria,2U0N9@28211|Alphaproteobacteria,3JW37@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2865)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2865
SX3_k127_2588438_13	1397696.KK211189_gene2556	3.599e-06	55.0	2DR03@1|root,339MB@2|Bacteria,1VK6Y@1239|Firmicutes,4HR34@91061|Bacilli	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2588438_9	1297865.APJD01000019_gene3145	1.199e-105	345.0	COG3118@1|root,COG3118@2|Bacteria,1MV0R@1224|Proteobacteria,2TS5X@28211|Alphaproteobacteria,3JRJ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Tetratricopeptide repeat	trxA2	-	-	ko:K03671,ko:K05838	ko04621,ko05418,map04621,map05418	-	-	-	ko00000,ko00001,ko03110	-	-	-	TPR_19,TPR_20,Thioredoxin
SX3_k127_2588438_12	1304877.KI519399_gene2180	2.87e-15	76.0	COG2802@1|root,COG2802@2|Bacteria,1NV9N@1224|Proteobacteria,2TQZ4@28211|Alphaproteobacteria,3JRXV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ATP-dependent protease La (LON) substrate-binding domain	lonD	-	3.4.21.53	ko:K01338,ko:K07157	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	LON_substr_bdg
SX3_k127_2596693_4	1230476.C207_01437	3.04e-300	931.0	COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2TRA0@28211|Alphaproteobacteria,3JRYB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Carboxyl transferase domain	mccB	-	6.4.1.4	ko:K01969	ko00280,ko01100,map00280,map01100	M00036	R04138	RC00367,RC00942	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
SX3_k127_2596693_6	1297865.APJD01000001_gene5872	1.013e-257	795.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TREJ@28211|Alphaproteobacteria,3JU2P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	ivd2	-	1.3.8.4	ko:K00253	ko00280,ko01100,map00280,map01100	M00036	R04095	RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_2596693_9	1297865.APJD01000001_gene5873	4.73e-134	428.0	COG1309@1|root,COG1309@2|Bacteria,1R7JI@1224|Proteobacteria,2U0P5@28211|Alphaproteobacteria,3JU8I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_4,TetR_N
SX3_k127_2596693_10	1297865.APJD01000001_gene5874	2.153e-96	321.0	COG1522@1|root,COG1522@2|Bacteria,1NJYQ@1224|Proteobacteria,2U1HE@28211|Alphaproteobacteria,3JRK0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	MA20_30230	-	-	-	-	-	-	-	-	-	-	-	AsnC_trans_reg,HTH_24,HTH_AsnC-type
SX3_k127_2596693_11	1230476.C207_01433	1.669e-61	214.0	2C7TH@1|root,32RJS@2|Bacteria,1MZK8@1224|Proteobacteria,2UC2R@28211|Alphaproteobacteria,3JZJC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ETC complex I subunit conserved region	MA20_30235	-	1.6.5.3	ko:K00329	ko00190,map00190	-	R11945	RC00061	ko00000,ko00001,ko01000	-	-	-	ETC_C1_NDUFA4
SX3_k127_2596693_5	1297865.APJD01000001_gene5876	9.863e-259	800.0	COG4645@1|root,COG4645@2|Bacteria,1PI9Q@1224|Proteobacteria,2U1C7@28211|Alphaproteobacteria,3JUIC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	OpgC protein	MA20_30240	-	-	-	-	-	-	-	-	-	-	-	OpgC_C
SX3_k127_2596693_7	1297865.APJD01000001_gene5877	3.655e-198	619.0	COG3324@1|root,COG3324@2|Bacteria,1R81W@1224|Proteobacteria,2U6BE@28211|Alphaproteobacteria,3JQZ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	glyoxalase bleomycin resistance protein dioxygenase	-	-	-	ko:K06996	-	-	-	-	ko00000	-	-	-	Glyoxalase
SX3_k127_2596693_12	172088.AUGA01000029_gene1918	5.081e-60	209.0	2EB2D@1|root,33538@2|Bacteria,1NAII@1224|Proteobacteria,2UIFU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2596693_1	1297865.APJD01000001_gene5878	0.0	1537.0	COG1944@1|root,COG1944@2|Bacteria,1N5NV@1224|Proteobacteria,2U1QX@28211|Alphaproteobacteria,3JSQD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YcaO cyclodehydratase, ATP-ad Mg2+-binding	-	-	-	ko:K09136	-	-	-	-	ko00000,ko03009	-	-	-	YcaO
SX3_k127_2596693_3	1297865.APJD01000001_gene5879	2.87e-322	987.0	COG0778@1|root,COG0778@2|Bacteria,1PUI1@1224|Proteobacteria,2U13C@28211|Alphaproteobacteria,3JU53@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase family	-	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
SX3_k127_2596693_2	1297865.APJD01000001_gene5880	0.0	1251.0	COG2192@1|root,COG2192@2|Bacteria,1MWBA@1224|Proteobacteria,2TV6G@28211|Alphaproteobacteria,3JR7Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	symbiont process	-	-	-	ko:K00612	-	-	-	-	ko00000,ko01000	-	-	-	Carbam_trans_C,Carbam_trans_N
SX3_k127_2596693_13	1230476.C207_01430	2.331e-45	165.0	2AEF9@1|root,314AA@2|Bacteria,1N9NG@1224|Proteobacteria,2UITK@28211|Alphaproteobacteria,3K0ZE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2596693_8	1297865.APJD01000001_gene5882	7.24e-179	565.0	COG1878@1|root,COG1878@2|Bacteria,1MV8S@1224|Proteobacteria,2TSUJ@28211|Alphaproteobacteria,3JR5M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative cyclase	-	-	-	-	-	-	-	-	-	-	-	-	Cyclase
SX3_k127_2596693_0	1297865.APJD01000001_gene5883	0.0	1747.0	COG0457@1|root,COG3914@1|root,COG0457@2|Bacteria,COG3914@2|Bacteria,1MVMG@1224|Proteobacteria,2TRVB@28211|Alphaproteobacteria,3JR8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_41,Methyltransf_23,TPR_1,TPR_11,TPR_16,TPR_2,TPR_8
SX3_k127_2599922_3	1297865.APJD01000011_gene6704	1.025e-68	235.0	2AAT7@1|root,3105S@2|Bacteria,1MYYY@1224|Proteobacteria,2UAHT@28211|Alphaproteobacteria,3JZVZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF5132)	-	-	-	-	-	-	-	-	-	-	-	-	DUF5132
SX3_k127_2599922_2	1297865.APJD01000011_gene6703	1.207e-114	370.0	2DWR6@1|root,341HZ@2|Bacteria,1Q3XD@1224|Proteobacteria,2U2DN@28211|Alphaproteobacteria,3JXIR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2599922_0	1297865.APJD01000011_gene6702	0.0	1377.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2U0ZY@28211|Alphaproteobacteria,3JWRM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	E1-E2 ATPase	-	-	-	-	-	-	-	-	-	-	-	-	E1-E2_ATPase,Hydrolase
SX3_k127_2599922_1	1297865.APJD01000011_gene6701	6.262e-164	528.0	2CCV8@1|root,2Z7KX@2|Bacteria,1MY2J@1224|Proteobacteria,2TUT1@28211|Alphaproteobacteria,3JWMV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	EcsC protein family	-	-	-	-	-	-	-	-	-	-	-	-	EcsC
SX3_k127_2606044_1	1297865.APJD01000014_gene747	1.459e-93	309.0	COG0038@1|root,COG0038@2|Bacteria,1MV4K@1224|Proteobacteria,2TT6V@28211|Alphaproteobacteria,3JX9K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Voltage gated chloride channel	-	-	-	ko:K03281	-	-	-	-	ko00000	2.A.49	-	-	Voltage_CLC
SX3_k127_2606044_5	1230476.C207_01710	3.103e-72	244.0	COG1051@1|root,COG1051@2|Bacteria,1RE3N@1224|Proteobacteria,2U8EW@28211|Alphaproteobacteria,3JZ5H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	NUDIX domain	MA20_41050	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_2606044_7	1297865.APJD01000014_gene745	1.227e-50	182.0	2ACQC@1|root,312AZ@2|Bacteria,1N3B3@1224|Proteobacteria,2UE70@28211|Alphaproteobacteria,3JZRK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2606044_9	189753.AXAS01000020_gene1693	0.0003521	45.0	2AMRK@1|root,31CMX@2|Bacteria,1NA8C@1224|Proteobacteria,2UH7A@28211|Alphaproteobacteria,3K1BF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2606044_8	1297865.APJD01000014_gene744	1.512e-46	167.0	2A7ZV@1|root,30X02@2|Bacteria,1N2JN@1224|Proteobacteria,2UE8Y@28211|Alphaproteobacteria,3K09Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2606044_3	1297865.APJD01000014_gene743	1.406e-79	265.0	COG0346@1|root,COG0346@2|Bacteria,1RGDW@1224|Proteobacteria,2U7FI@28211|Alphaproteobacteria,3JZ9Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	lactoylglutathione lyase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2606044_6	1297865.APJD01000014_gene742	7.779e-65	222.0	COG0789@1|root,COG0789@2|Bacteria,1Q1D1@1224|Proteobacteria,2V5YU@28211|Alphaproteobacteria,3JZSA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, mercury resistance	-	-	-	-	-	-	-	-	-	-	-	-	MerR_1
SX3_k127_2606044_0	1297865.APJD01000014_gene741	2.546e-165	522.0	COG2951@1|root,COG2951@2|Bacteria,1MVY0@1224|Proteobacteria,2TTVI@28211|Alphaproteobacteria,3JTHR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	MA20_26785	-	-	-	-	-	-	-	-	-	-	-	SLT_2
SX3_k127_2606044_2	1297865.APJD01000014_gene740	1.197e-85	284.0	2ER0Q@1|root,33IK9@2|Bacteria,1MYWU@1224|Proteobacteria,2UAS3@28211|Alphaproteobacteria,3JZZ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	T3SS negative regulator,GrlR	-	-	-	-	-	-	-	-	-	-	-	-	GrlR
SX3_k127_2606044_4	1297865.APJD01000014_gene739	2.754e-78	263.0	COG3795@1|root,COG3795@2|Bacteria,1RDGG@1224|Proteobacteria,2UAZN@28211|Alphaproteobacteria,3JYMM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
SX3_k127_2618670_6	1297865.APJD01000014_gene875	2.118e-123	411.0	COG1024@1|root,COG1024@2|Bacteria,1MVPQ@1224|Proteobacteria,2TTJ4@28211|Alphaproteobacteria,3JSCJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase	MA20_32365	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_2618670_2	1297865.APJD01000014_gene874	3.584e-313	962.0	COG0154@1|root,COG0154@2|Bacteria,1MW3Z@1224|Proteobacteria,2TS56@28211|Alphaproteobacteria,3JRX9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	MA20_32360	-	3.5.1.4,6.3.5.6,6.3.5.7	ko:K01426,ko:K02433	ko00330,ko00360,ko00380,ko00627,ko00643,ko00970,ko01100,ko01120,map00330,map00360,map00380,map00627,map00643,map00970,map01100,map01120	-	R02540,R03096,R03180,R03905,R03909,R04212,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
SX3_k127_2618670_3	288000.BBta_5260	5.292e-227	706.0	COG1473@1|root,COG1473@2|Bacteria,1MUIV@1224|Proteobacteria,2TR5B@28211|Alphaproteobacteria,3JUGN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase dimerisation domain	MA20_32355	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_2618670_1	1297865.APJD01000014_gene872	0.0	1028.0	COG5476@1|root,COG5476@2|Bacteria,1MX4P@1224|Proteobacteria,2TS1C@28211|Alphaproteobacteria,3JRKN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC)	MA20_32350	-	-	-	-	-	-	-	-	-	-	-	DUF1485,MlrC_C
SX3_k127_2618670_0	1297865.APJD01000014_gene871	0.0	1070.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,3JTTR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	MA20_32345	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_2618670_5	1297865.APJD01000014_gene870	2.633e-178	559.0	COG1173@1|root,COG1173@2|Bacteria,1MVER@1224|Proteobacteria,2TRB3@28211|Alphaproteobacteria,3JRHV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_32340	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_2618670_4	1297865.APJD01000014_gene869	8.654e-192	601.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TRH6@28211|Alphaproteobacteria,3JSES@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_32335	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_2623980_4	1297865.APJD01000019_gene3184	4.01e-197	615.0	COG1075@1|root,COG1075@2|Bacteria,1MWM9@1224|Proteobacteria,2TS9F@28211|Alphaproteobacteria,3JSV7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	acetyltransferases and hydrolases with the alpha beta hydrolase fold	MA20_25185	-	-	-	-	-	-	-	-	-	-	-	Lipase_2
SX3_k127_2623980_1	398525.KB900701_gene1655	0.0	1043.0	COG0477@1|root,COG0477@2|Bacteria,1MXZ3@1224|Proteobacteria,2TSHC@28211|Alphaproteobacteria,3JQR9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Transmembrane secretion effector	-	-	-	-	-	-	-	-	-	-	-	-	MFS_3
SX3_k127_2623980_8	1297865.APJD01000019_gene3182	3.145e-36	137.0	2BSH8@1|root,314FI@2|Bacteria,1NA6R@1224|Proteobacteria,2UF6E@28211|Alphaproteobacteria,3K0XJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Cys_rich_FGFR
SX3_k127_2623980_7	1297865.APJD01000019_gene3181	9.383e-49	178.0	2EHBN@1|root,30YYP@2|Bacteria,1RJQ7@1224|Proteobacteria,2U9QT@28211|Alphaproteobacteria,3JZK4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2623980_3	1297865.APJD01000019_gene3180	4.033e-220	684.0	COG0726@1|root,COG0726@2|Bacteria,1PJQG@1224|Proteobacteria,2TUBN@28211|Alphaproteobacteria,3JS2J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Polysaccharide deacetylase	MA20_25165	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_2623980_6	1297865.APJD01000019_gene3179	7.739e-73	247.0	2ACG9@1|root,3121Z@2|Bacteria,1N2TF@1224|Proteobacteria,2UE5J@28211|Alphaproteobacteria,3K053@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2623980_0	1297865.APJD01000019_gene3178	0.0	1134.0	COG3898@1|root,COG3898@2|Bacteria,1P5RR@1224|Proteobacteria,2TT5Q@28211|Alphaproteobacteria,3JVSU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HemY protein N-terminus	lapB	-	-	ko:K02498	-	-	-	-	ko00000	-	-	-	HemY_N,TPR_19
SX3_k127_2623980_2	1297865.APJD01000019_gene3177	4.487e-242	751.0	COG4223@1|root,COG4223@2|Bacteria,1R5IX@1224|Proteobacteria,2TT4G@28211|Alphaproteobacteria,3JRIX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	DZ	transferase activity, transferring acyl groups other than amino-acyl groups	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2623980_5	1297865.APJD01000019_gene3176	8.379e-134	427.0	COG1587@1|root,COG1587@2|Bacteria,1NMTP@1224|Proteobacteria,2U1Y2@28211|Alphaproteobacteria,3JVP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Uroporphyrinogen-III synthase HemD	hemD	-	4.2.1.75	ko:K01719	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R03165	RC01861	ko00000,ko00001,ko00002,ko01000	-	-	-	HEM4
SX3_k127_2627498_11	1297865.APJD01000003_gene6183	5.013e-17	81.0	2EKBW@1|root,33E29@2|Bacteria,1NEBH@1224|Proteobacteria,2UJN8@28211|Alphaproteobacteria,3K1Y5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2627498_3	1230476.C207_06302	1.9e-201	629.0	COG1372@1|root,COG1372@2|Bacteria	2|Bacteria	L	intein-mediated protein splicing	-	-	-	-	-	-	-	-	-	-	-	-	PT-HINT
SX3_k127_2627498_10	1230476.C207_05257	7.94e-22	99.0	COG1109@1|root,COG1109@2|Bacteria,1MUA5@1224|Proteobacteria,2TRIJ@28211|Alphaproteobacteria,3JTAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	phosphoglucomutase phosphomannomutase alpha beta alpha domain I	algC	-	5.4.2.2,5.4.2.8	ko:K15778	ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	M00114	R00959,R01057,R01818,R08639	RC00408	ko00000,ko00001,ko00002,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
SX3_k127_2627498_0	1297865.APJD01000003_gene6184	5.504e-305	934.0	COG1109@1|root,COG1109@2|Bacteria,1MUA5@1224|Proteobacteria,2TRIJ@28211|Alphaproteobacteria,3JTAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	phosphoglucomutase phosphomannomutase alpha beta alpha domain I	algC	-	5.4.2.2,5.4.2.8	ko:K15778	ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	M00114	R00959,R01057,R01818,R08639	RC00408	ko00000,ko00001,ko00002,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
SX3_k127_2627498_6	1297865.APJD01000003_gene6185	3.179e-99	325.0	COG1522@1|root,COG1522@2|Bacteria,1RDB3@1224|Proteobacteria,2U580@28211|Alphaproteobacteria,3JVRV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulator, AsnC family	MA20_21975	-	-	ko:K05800	-	-	-	-	ko00000,ko03000	-	-	-	AsnC_trans_reg,HTH_24,HTH_AsnC-type
SX3_k127_2627498_2	1297865.APJD01000003_gene6186	2.304e-203	636.0	COG0524@1|root,COG0524@2|Bacteria,1MWX4@1224|Proteobacteria,2VF16@28211|Alphaproteobacteria,3JV89@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the carbohydrate kinase PfkB family	-	-	-	-	-	-	-	-	-	-	-	-	PfkB
SX3_k127_2627498_1	1297865.APJD01000003_gene6187	2.309e-215	668.0	COG2816@1|root,COG2816@2|Bacteria,1QGCX@1224|Proteobacteria,2TVMG@28211|Alphaproteobacteria,3JUTY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	NADH pyrophosphatase-like rudimentary NUDIX domain	nudC	-	3.6.1.22	ko:K03426	ko00760,ko01100,ko04146,map00760,map01100,map04146	-	R00103,R03004,R11104	RC00002	ko00000,ko00001,ko01000	-	-	-	NUDIX,NUDIX-like,zf-NADH-PPase
SX3_k127_2627498_7	1297865.APJD01000003_gene6188	1.131e-88	292.0	COG0537@1|root,COG0537@2|Bacteria,1MZVD@1224|Proteobacteria,2UC00@28211|Alphaproteobacteria,3JY2G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	FG	HIT domain	MA20_21960	-	-	-	-	-	-	-	-	-	-	-	HIT
SX3_k127_2627498_12	266834.SMc02904	1.543e-09	61.0	COG0537@1|root,COG0537@2|Bacteria,1MZVD@1224|Proteobacteria,2UC00@28211|Alphaproteobacteria,4BE8T@82115|Rhizobiaceae	28211|Alphaproteobacteria	FG	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	MA20_21960	-	-	-	-	-	-	-	-	-	-	-	HIT
SX3_k127_2627498_9	1297865.APJD01000003_gene6189	2.188e-22	102.0	COG2812@1|root,COG2812@2|Bacteria,1MVCK@1224|Proteobacteria,2TRPB@28211|Alphaproteobacteria,3JS32@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	dnaX	-	2.7.7.7	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta2,DNA_pol3_gamma3,DUF3646
SX3_k127_2628631_9	1297865.APJD01000062_gene3359	3.301e-14	72.0	2A71K@1|root,30VWX@2|Bacteria,1N20Z@1224|Proteobacteria,2UDD0@28211|Alphaproteobacteria,3K029@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2628631_4	1297865.APJD01000062_gene3360	3.178e-77	260.0	2EFA0@1|root,3392Y@2|Bacteria,1RD0W@1224|Proteobacteria,2U7TA@28211|Alphaproteobacteria,3JYHC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	FlaG
SX3_k127_2628631_2	1297865.APJD01000062_gene3361	2.332e-95	313.0	2BW5Z@1|root,32QZ3@2|Bacteria,1RDZK@1224|Proteobacteria,2UD61@28211|Alphaproteobacteria,3JYRH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2628631_8	1297865.APJD01000062_gene3362	2.043e-68	239.0	COG3951@1|root,COG3951@2|Bacteria,1N7K5@1224|Proteobacteria,2UFY2@28211|Alphaproteobacteria,3JZX3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MNO	Rod binding protein	cheL	-	-	-	-	-	-	-	-	-	-	-	Rod-binding
SX3_k127_2628631_0	1230476.C207_00793	3.01e-225	700.0	COG1706@1|root,COG1706@2|Bacteria,1MVKW@1224|Proteobacteria,2TQNX@28211|Alphaproteobacteria,3JTS6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation	flgI	GO:0005575,GO:0005623,GO:0009288,GO:0009425,GO:0042597,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464	-	ko:K02394	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlgI
SX3_k127_2628631_6	1297865.APJD01000062_gene3364	2.191e-74	256.0	2E5SK@1|root,330GZ@2|Bacteria,1N7R1@1224|Proteobacteria,2UFAX@28211|Alphaproteobacteria,3JY0K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Class II flagellar assembly regulator	fliX	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	FliX
SX3_k127_2628631_7	1297865.APJD01000062_gene3365	1.198e-73	248.0	COG1733@1|root,COG1733@2|Bacteria,1MZ6N@1224|Proteobacteria,2UC19@28211|Alphaproteobacteria,3JYI3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	MA20_08395	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_2628631_1	1297865.APJD01000062_gene3366	7.741e-124	398.0	COG2910@1|root,COG2910@2|Bacteria,1MV9B@1224|Proteobacteria,2TRZ3@28211|Alphaproteobacteria,3JTF3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NmrA-like family	MA20_08400	-	-	ko:K07118	-	-	-	-	ko00000	-	-	-	NAD_binding_10
SX3_k127_2628631_5	316056.RPC_1499	4.732e-75	254.0	COG1734@1|root,COG1734@2|Bacteria,1RD08@1224|Proteobacteria,2U74V@28211|Alphaproteobacteria,3JY09@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters	dksA	-	-	ko:K06204	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000,ko03009,ko03021	-	-	-	zf-dskA_traR
SX3_k127_2628631_3	1297865.APJD01000062_gene3368	1.194e-92	304.0	2DB9K@1|root,2Z7XA@2|Bacteria,1R4GI@1224|Proteobacteria,2TZ7A@28211|Alphaproteobacteria,3JTVQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phytanoyl-CoA dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
SX3_k127_2643427_0	1297865.APJD01000011_gene6533	0.0	1580.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JT1X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Bacterial signalling protein N terminal repeat	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_7,PAS_8,PAS_9
SX3_k127_2643427_1	1297865.APJD01000011_gene6534	8.985e-194	606.0	COG0189@1|root,COG0189@2|Bacteria,1PBT7@1224|Proteobacteria,2TVR7@28211|Alphaproteobacteria,3JTWH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	HJ	ligase activity	-	-	-	-	-	-	-	-	-	-	-	-	RimK
SX3_k127_2643427_3	1230476.C207_05908	1.163e-166	525.0	COG0543@1|root,COG0543@2|Bacteria,1QTSK@1224|Proteobacteria,2TQNB@28211|Alphaproteobacteria,3JQTJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Oxidoreductase NAD-binding domain	fpr	-	1.18.1.2,1.19.1.1	ko:K00528	-	-	R10159	-	ko00000,ko01000	-	-	-	FAD_binding_6,NAD_binding_1
SX3_k127_2643427_2	1297865.APJD01000011_gene6536	5.618e-186	586.0	COG1752@1|root,COG1752@2|Bacteria,1MX8Y@1224|Proteobacteria,2TVP9@28211|Alphaproteobacteria,3JS3R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Patatin-like phospholipase	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin
SX3_k127_2648152_5	1297865.APJD01000010_gene5123	1.131e-73	249.0	COG1028@1|root,COG1028@2|Bacteria,1N8G3@1224|Proteobacteria,2TUTY@28211|Alphaproteobacteria,3JSK3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short,adh_short_C2
SX3_k127_2648152_3	1297865.APJD01000010_gene5124	4.883e-109	358.0	COG2755@1|root,COG2755@2|Bacteria,1RCAC@1224|Proteobacteria,2U0SR@28211|Alphaproteobacteria,3JVDT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	lipolytic protein G-D-S-L family	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
SX3_k127_2648152_8	1230476.C207_05342	2.667e-34	132.0	29E9N@1|root,3017Q@2|Bacteria,1N6GN@1224|Proteobacteria,2UD18@28211|Alphaproteobacteria,3K0S8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2648152_1	1297865.APJD01000010_gene5126	2.938e-159	503.0	COG2365@1|root,COG2365@2|Bacteria,1R4XF@1224|Proteobacteria,2U0KA@28211|Alphaproteobacteria,3JUJ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Tyrosine phosphatase family	-	-	3.1.3.48	ko:K01104	-	-	-	-	ko00000,ko01000	-	-	-	Y_phosphatase3
SX3_k127_2648152_6	1297865.APJD01000010_gene5127	1.759e-49	177.0	2A9G9@1|root,30YN0@2|Bacteria,1RJ0U@1224|Proteobacteria,2UBC1@28211|Alphaproteobacteria,3JZT3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Membrane-bound lysozyme-inhibitor of c-type lysozyme	-	-	-	-	-	-	-	-	-	-	-	-	MliC
SX3_k127_2648152_7	1297865.APJD01000010_gene5128	6.838e-37	140.0	28S0E@1|root,2ZECA@2|Bacteria,1N1GX@1224|Proteobacteria,2UDK6@28211|Alphaproteobacteria,3K06T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2735)	MA20_28560	-	-	-	-	-	-	-	-	-	-	-	DUF2735
SX3_k127_2648152_0	1297865.APJD01000010_gene5129	3.327e-241	745.0	COG0174@1|root,COG0174@2|Bacteria,1NZU7@1224|Proteobacteria,2TS0B@28211|Alphaproteobacteria,3JR58@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glutamine synthetase, catalytic domain	glnII	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C,Gln-synt_N
SX3_k127_2648152_2	1297865.APJD01000010_gene5130	4.563e-149	472.0	2A59E@1|root,30TYK@2|Bacteria,1NBM6@1224|Proteobacteria,2TR3Y@28211|Alphaproteobacteria,3JTE7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_28575	-	-	-	-	-	-	-	-	-	-	-	GrlR
SX3_k127_2648152_4	1297865.APJD01000010_gene5131	3.007e-77	261.0	COG0725@1|root,COG0725@2|Bacteria,1PTVK@1224|Proteobacteria,2TU4Y@28211|Alphaproteobacteria,3JQYR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial extracellular solute-binding protein	-	-	5.3.3.7	ko:K22003	ko00660,map00660	-	R02244	RC00668	ko00000,ko00001,ko01000	-	-	-	SBP_bac_11
SX3_k127_2652476_2	1297865.APJD01000020_gene305	2.045e-149	475.0	COG4964@1|root,COG4964@2|Bacteria,1MV8G@1224|Proteobacteria,2TRNN@28211|Alphaproteobacteria,3JTDQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Bacterial type II and III secretion system protein	cpaC	-	-	ko:K02280	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	BON,Secretin,T2SS-T3SS_pil_N
SX3_k127_2652476_1	1297865.APJD01000020_gene306	1.549e-164	518.0	COG3745@1|root,COG3745@2|Bacteria,1MW75@1224|Proteobacteria,2TTPE@28211|Alphaproteobacteria,3JTGM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	pilus assembly protein CpaB	cpaB	-	-	ko:K02279	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	RcpC,SAF
SX3_k127_2652476_0	1297865.APJD01000020_gene307	7.119e-267	822.0	COG0626@1|root,COG0626@2|Bacteria,1MU9E@1224|Proteobacteria,2TS8Z@28211|Alphaproteobacteria,3JT5G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	cystathionine beta-lyase	metC	-	4.4.1.8	ko:K01760	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R00782,R01286,R02408,R04941	RC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303	ko00000,ko00001,ko00002,ko01000	-	-	-	Cys_Met_Meta_PP
SX3_k127_268152_14	1297865.APJD01000009_gene2751	8.262e-129	412.0	2A6HK@1|root,30VAW@2|Bacteria,1R8I4@1224|Proteobacteria,2TUAX@28211|Alphaproteobacteria,3JXYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FRG domain	-	-	-	-	-	-	-	-	-	-	-	-	FRG
SX3_k127_268152_28	1304877.KI519399_gene3301	7.653e-06	50.0	2A79Y@1|root,30W6M@2|Bacteria,1RD3K@1224|Proteobacteria,2U7AJ@28211|Alphaproteobacteria,3JYYU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_268152_12	1230476.C207_03598	1.087e-171	539.0	COG2951@1|root,COG2951@2|Bacteria,1MVY0@1224|Proteobacteria,2TTVI@28211|Alphaproteobacteria,3JVHY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	-	-	-	-	-	-	-	-	-	-	-	-	SLT_2
SX3_k127_268152_7	1297865.APJD01000009_gene2753	6.781e-219	678.0	COG3739@1|root,COG3739@2|Bacteria,1PMEC@1224|Proteobacteria,2TRGD@28211|Alphaproteobacteria,3JVYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF817)	-	-	-	-	-	-	-	-	-	-	-	-	DUF817
SX3_k127_268152_21	1297865.APJD01000009_gene2754	7.011e-84	281.0	COG5485@1|root,COG5485@2|Bacteria,1RBA1@1224|Proteobacteria,2U5UD@28211|Alphaproteobacteria,3K5U2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL
SX3_k127_268152_0	1297865.APJD01000009_gene2755	0.0	1826.0	COG4995@1|root,COG4995@2|Bacteria,1QUP3@1224|Proteobacteria,2TW2P@28211|Alphaproteobacteria,3K6QI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CHAT domain	-	-	-	-	-	-	-	-	-	-	-	-	CHAT,TPR_12
SX3_k127_268152_22	398525.KB900701_gene2823	3.156e-52	186.0	2E3FK@1|root,32YEE@2|Bacteria,1N0EV@1224|Proteobacteria,2UBRK@28211|Alphaproteobacteria,3K08W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_04885	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_268152_4	1297865.APJD01000009_gene2757	0.0	1340.0	COG0568@1|root,COG0568@2|Bacteria,1MVNJ@1224|Proteobacteria,2TS6C@28211|Alphaproteobacteria,3JSBI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	rpoD	-	-	ko:K03086	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_ner,Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
SX3_k127_268152_3	1297865.APJD01000009_gene2758	0.0	1342.0	COG0358@1|root,COG0358@2|Bacteria,1MUHC@1224|Proteobacteria,2TRU2@28211|Alphaproteobacteria,3JQWZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	dnaG	-	-	ko:K02316	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB_bind,Toprim_4,Toprim_N,zf-CHC2
SX3_k127_268152_17	1297865.APJD01000009_gene2759	3.995e-112	366.0	2DKJT@1|root,309RD@2|Bacteria,1R36E@1224|Proteobacteria,2TZYN@28211|Alphaproteobacteria,3K71K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Chlorite dismutase	-	-	-	-	-	-	-	-	-	-	-	-	Chlor_dismutase
SX3_k127_268152_20	1297865.APJD01000009_gene2761	4.066e-85	284.0	COG2105@1|root,COG2105@2|Bacteria,1N80E@1224|Proteobacteria,2U5YU@28211|Alphaproteobacteria,3JY9V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Gamma-glutamyl cyclotransferase, AIG2-like	-	-	-	-	-	-	-	-	-	-	-	-	GGACT
SX3_k127_268152_10	1297865.APJD01000009_gene2762	5.161e-178	567.0	COG1305@1|root,COG1305@2|Bacteria,1MWAI@1224|Proteobacteria,2TURT@28211|Alphaproteobacteria,3JS7N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Transglut_core
SX3_k127_268152_8	1297865.APJD01000009_gene2763	4.312e-200	625.0	COG1305@1|root,COG1305@2|Bacteria,1MVAG@1224|Proteobacteria,2TSVH@28211|Alphaproteobacteria,3JU4J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
SX3_k127_268152_11	1297865.APJD01000009_gene2764	4.248e-175	549.0	COG3931@1|root,COG3931@2|Bacteria,1QI71@1224|Proteobacteria,2TVK6@28211|Alphaproteobacteria,3JTTE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	N-formylglutamate amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	FGase
SX3_k127_268152_27	1297865.APJD01000009_gene2765	4.18e-31	123.0	2AEYQ@1|root,314WN@2|Bacteria,1N89E@1224|Proteobacteria,2UJ8J@28211|Alphaproteobacteria,3K1KM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_268152_6	1297865.APJD01000009_gene2766	4.001e-238	737.0	COG3182@1|root,COG3182@2|Bacteria,1MW2S@1224|Proteobacteria,2TSFC@28211|Alphaproteobacteria,3JW59@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
SX3_k127_268152_2	1297865.APJD01000009_gene2768	0.0	1522.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JQP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_268152_24	1297865.APJD01000009_gene2769	1.463e-42	157.0	2BVK6@1|root,33CZG@2|Bacteria,1N03P@1224|Proteobacteria,2UC04@28211|Alphaproteobacteria,3K05K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_268152_13	1297865.APJD01000009_gene2770	6.001e-136	434.0	COG1309@1|root,COG1309@2|Bacteria,1R83W@1224|Proteobacteria,2U6AB@28211|Alphaproteobacteria,3JYEV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_268152_1	1297865.APJD01000009_gene2771	0.0	1774.0	COG1529@1|root,COG2080@1|root,COG1529@2|Bacteria,COG2080@2|Bacteria,1MUEA@1224|Proteobacteria,2TWGU@28211|Alphaproteobacteria,3JQT8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	aldehyde oxidase and xanthine dehydrogenase, a b hammerhead	-	-	1.17.1.4	ko:K11177	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2,Fer2,Fer2_2
SX3_k127_268152_9	1297865.APJD01000009_gene2772	1.946e-185	605.0	COG1319@1|root,COG1319@2|Bacteria,1R3XA@1224|Proteobacteria,2TUC4@28211|Alphaproteobacteria,3JW8Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CO dehydrogenase flavoprotein C-terminal domain	-	-	1.17.1.4	ko:K11178	ko00230,ko01100,ko01120,map00230,map01100,map01120	M00546	R01768,R02103	RC00143	ko00000,ko00001,ko00002,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
SX3_k127_268152_15	1297865.APJD01000009_gene2773	7.029e-128	410.0	COG1280@1|root,COG1280@2|Bacteria,1MXAI@1224|Proteobacteria,2TSWP@28211|Alphaproteobacteria,3JRZ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	LysE type translocator	-	-	-	-	-	-	-	-	-	-	-	-	LysE
SX3_k127_268152_16	1297865.APJD01000009_gene2774	3.94e-115	371.0	2A6R3@1|root,30VJ7@2|Bacteria,1RA66@1224|Proteobacteria,2U5Q2@28211|Alphaproteobacteria,3JY3C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_268152_5	1297865.APJD01000009_gene2775	1.417e-308	949.0	COG5276@1|root,COG5276@2|Bacteria,1MU72@1224|Proteobacteria,2TZVG@28211|Alphaproteobacteria,3JS0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	repeat protein	MA20_04930	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_268152_23	1396141.BATP01000039_gene1433	4.02e-45	165.0	COG0640@1|root,COG0640@2|Bacteria,46VMW@74201|Verrucomicrobia	74201|Verrucomicrobia	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
SX3_k127_268152_19	1297865.APJD01000009_gene2777	3.954e-100	326.0	COG3832@1|root,COG3832@2|Bacteria,1RDXJ@1224|Proteobacteria,2U7BG@28211|Alphaproteobacteria,3JYMG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_268152_25	754035.Mesau_01027	3.209e-37	146.0	COG3832@1|root,COG3832@2|Bacteria,1RB46@1224|Proteobacteria,2U5JZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_268152_18	1297865.APJD01000009_gene2779	9.592e-101	329.0	COG3832@1|root,COG3832@2|Bacteria,1N4A1@1224|Proteobacteria,2TUKQ@28211|Alphaproteobacteria,3JVZD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_2702582_9	1230476.C207_05295	1.242e-47	171.0	2EUI4@1|root,33N06@2|Bacteria,1N573@1224|Proteobacteria,2UCKD@28211|Alphaproteobacteria,3K05F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase propeptide and YPEB domain	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_2
SX3_k127_2702582_0	1297865.APJD01000001_gene6025	4.104e-291	900.0	COG0626@1|root,COG0626@2|Bacteria,1MU57@1224|Proteobacteria,2TW14@28211|Alphaproteobacteria,3JR56@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Cys/Met metabolism PLP-dependent enzyme	mdeA	-	2.5.1.48,4.4.1.11	ko:K01739,ko:K01761	ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230	M00017	R00654,R00999,R01288,R02508,R03217,R03260,R04770,R04944,R04945,R04946	RC00020,RC00056,RC00069,RC00196,RC00348,RC00420,RC01209,RC01210,RC02848,RC02866	ko00000,ko00001,ko00002,ko01000	-	-	-	Cys_Met_Meta_PP
SX3_k127_2702582_2	1297865.APJD01000001_gene6024	8.792e-210	654.0	COG2141@1|root,COG2141@2|Bacteria,1MVF0@1224|Proteobacteria,2TTR7@28211|Alphaproteobacteria,3JUZK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_21365	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_2702582_4	1297865.APJD01000001_gene6022	1.002e-175	554.0	2CAM1@1|root,301FE@2|Bacteria,1RJ36@1224|Proteobacteria,2U473@28211|Alphaproteobacteria,3JWV8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Ceramidase
SX3_k127_2702582_1	172088.AUGA01000025_gene386	3.873e-215	672.0	COG1408@1|root,COG1408@2|Bacteria,1MUH5@1224|Proteobacteria,2TVHN@28211|Alphaproteobacteria,3JVMT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase	-	-	-	ko:K07098	-	-	-	-	ko00000	-	-	-	Metallophos
SX3_k127_2702582_10	1297865.APJD01000001_gene6020	6.636e-31	127.0	29KP0@1|root,307KB@2|Bacteria,1NGWC@1224|Proteobacteria,2UJHM@28211|Alphaproteobacteria,3K298@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2702582_5	1297865.APJD01000001_gene6019	1.93e-124	400.0	COG1238@1|root,COG1238@2|Bacteria,1PAKJ@1224|Proteobacteria,2TU0A@28211|Alphaproteobacteria,3JT49@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SNARE associated Golgi protein	-	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
SX3_k127_2702582_8	1297865.APJD01000001_gene6018	9.127e-67	230.0	2AG2B@1|root,3166N@2|Bacteria,1NGIM@1224|Proteobacteria,2UMTR@28211|Alphaproteobacteria,3K29P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2702582_3	1297865.APJD01000001_gene6017	1.079e-177	558.0	COG1968@1|root,COG1968@2|Bacteria,1MX02@1224|Proteobacteria,2TSUR@28211|Alphaproteobacteria,3JXEN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Bacitracin resistance protein BacA	uppP	-	3.6.1.27	ko:K06153	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	BacA
SX3_k127_2702582_7	1297865.APJD01000001_gene6016	1.171e-78	265.0	COG3755@1|root,COG3755@2|Bacteria,1N1TQ@1224|Proteobacteria,2UCWM@28211|Alphaproteobacteria,3K034@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lysozyme inhibitor LprI	-	-	-	-	-	-	-	-	-	-	-	-	LprI
SX3_k127_2705754_4	1297865.APJD01000009_gene2905	6.112e-208	647.0	2DQY9@1|root,339CR@2|Bacteria,1NR8Y@1224|Proteobacteria,2U152@28211|Alphaproteobacteria,3JSVQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (Gcw_chp)	-	-	-	-	-	-	-	-	-	-	-	-	Gcw_chp
SX3_k127_2705754_0	1297865.APJD01000009_gene2904	0.0	1146.0	COG4178@1|root,COG4178@2|Bacteria,1MW09@1224|Proteobacteria,2TS9Q@28211|Alphaproteobacteria,3JQVA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter	-	-	-	ko:K02471	ko02010,map02010	-	-	-	ko00000,ko00001,ko02000	3.A.1.203.11,3.A.1.203.4	-	-	ABC_membrane_2,ABC_tran
SX3_k127_2705754_1	1297865.APJD01000009_gene2903	0.0	1089.0	COG1620@1|root,COG1620@2|Bacteria,1MV13@1224|Proteobacteria,2TQY1@28211|Alphaproteobacteria,3JT7Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	L-lactate permease	glcA	-	-	ko:K03303	-	-	-	-	ko00000,ko02000	2.A.14	-	-	Lactate_perm
SX3_k127_2705754_18	1230476.C207_06408	7.99e-09	68.0	COG3187@1|root,COG3187@2|Bacteria,1RGWB@1224|Proteobacteria,2U9ZH@28211|Alphaproteobacteria,3JZRF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	META domain	MA20_05910	-	-	-	-	-	-	-	-	-	-	-	META
SX3_k127_2705754_11	1297865.APJD01000009_gene2902	6.054e-81	273.0	COG3187@1|root,COG3187@2|Bacteria,1RGWB@1224|Proteobacteria,2U9ZH@28211|Alphaproteobacteria,3JZRF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	META domain	MA20_05910	-	-	-	-	-	-	-	-	-	-	-	META
SX3_k127_2705754_5	1297865.APJD01000009_gene2901	3.472e-135	436.0	2BS0C@1|root,32M0V@2|Bacteria,1R5UG@1224|Proteobacteria,2U40T@28211|Alphaproteobacteria,3JV1N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2705754_9	1297865.APJD01000009_gene2900	1.184e-92	306.0	COG0454@1|root,COG0456@2|Bacteria,1RHB3@1224|Proteobacteria,2UDFB@28211|Alphaproteobacteria,3K684@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) family	ysnE	-	-	ko:K03829	-	-	-	-	ko00000,ko01000	-	-	-	Acetyltransf_1,Acetyltransf_10
SX3_k127_2705754_6	1230476.C207_06406	2.467e-118	382.0	COG2169@1|root,COG2169@2|Bacteria,1QVGX@1224|Proteobacteria,2TWG3@28211|Alphaproteobacteria,3JUNJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Metal binding domain of Ada	-	-	3.2.2.21	ko:K13529	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03000,ko03400	-	-	-	Ada_Zn_binding,HTH_18
SX3_k127_2705754_10	1230476.C207_06405	6.272e-89	295.0	COG2050@1|root,COG2050@2|Bacteria,1RK46@1224|Proteobacteria,2U9U1@28211|Alphaproteobacteria,3JYKR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_2705754_7	1297865.APJD01000009_gene2897	2.232e-117	378.0	COG5485@1|root,COG5485@2|Bacteria,1R9WY@1224|Proteobacteria,2U6GT@28211|Alphaproteobacteria,3JYE0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL
SX3_k127_2705754_16	1297865.APJD01000009_gene2896	7.292e-39	145.0	2AGDS@1|root,316JK@2|Bacteria,1NHWV@1224|Proteobacteria,2UKNS@28211|Alphaproteobacteria,3K1S4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2705754_13	1297865.APJD01000009_gene2895	1.746e-63	218.0	2ANNG@1|root,31DMW@2|Bacteria,1P53Q@1224|Proteobacteria,2UYDT@28211|Alphaproteobacteria,3K5PA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2705754_3	1297865.APJD01000009_gene2894	5.393e-250	773.0	2FJIR@1|root,34B87@2|Bacteria,1MUI1@1224|Proteobacteria,2TSUN@28211|Alphaproteobacteria,3JSV5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2705754_8	1297865.APJD01000009_gene2893	8.745e-96	314.0	COG1846@1|root,COG1846@2|Bacteria,1MZXE@1224|Proteobacteria,2U7TP@28211|Alphaproteobacteria,3JXJF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_2705754_12	1297865.APJD01000009_gene2892	8.398e-72	243.0	COG2329@1|root,COG2329@2|Bacteria,1RE6Q@1224|Proteobacteria,2U7AX@28211|Alphaproteobacteria,3JYUQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_2705754_15	1297865.APJD01000009_gene2891	1.884e-53	188.0	29DZN@1|root,300XK@2|Bacteria,1N5DG@1224|Proteobacteria,2UE8M@28211|Alphaproteobacteria,3K0HP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2705754_2	398525.KB900701_gene2684	0.0	1018.0	COG0459@1|root,COG0459@2|Bacteria,1MURR@1224|Proteobacteria,2TS07@28211|Alphaproteobacteria,3JSH9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	groL	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
SX3_k127_2705754_14	398525.KB900701_gene2685	2.405e-56	197.0	COG0234@1|root,COG0234@2|Bacteria,1MZ2X@1224|Proteobacteria,2U9AQ@28211|Alphaproteobacteria,3JZFZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	groS	-	-	ko:K04078	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Cpn10
SX3_k127_2705754_17	1230476.C207_03473	4.682e-26	108.0	2C86A@1|root,32VZQ@2|Bacteria,1MUVK@1224|Proteobacteria,2U1E4@28211|Alphaproteobacteria,3JS19@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_05890	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2710397_6	1297865.APJD01000028_gene5245	1.359e-68	235.0	COG0777@1|root,COG0777@2|Bacteria,1MW8G@1224|Proteobacteria,2TRSH@28211|Alphaproteobacteria,3JSZ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA	accD	-	2.1.3.15,6.4.1.2	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
SX3_k127_2710397_3	1297865.APJD01000028_gene5244	1.439e-171	539.0	COG0159@1|root,COG0159@2|Bacteria,1MXJV@1224|Proteobacteria,2TQN2@28211|Alphaproteobacteria,3JSKX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate	trpA	-	4.2.1.20	ko:K01695	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	M00023	R00674,R02340,R02722	RC00209,RC00210,RC00700,RC00701,RC02868	ko00000,ko00001,ko00002,ko01000	-	-	-	Trp_syntA
SX3_k127_2710397_8	1230476.C207_02278	1.453e-58	216.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,3JZVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
SX3_k127_2710397_0	1297865.APJD01000028_gene5242	6.582e-270	833.0	COG0133@1|root,COG0133@2|Bacteria,1MUS8@1224|Proteobacteria,2TSHK@28211|Alphaproteobacteria,3JSNN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine	trpB	GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.2.1.20	ko:K01696	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	M00023	R00674,R02340,R02722	RC00209,RC00210,RC00700,RC00701,RC02868	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_2710397_4	1297865.APJD01000028_gene5241	3.393e-137	438.0	COG0135@1|root,COG0135@2|Bacteria,1RA87@1224|Proteobacteria,2U7CH@28211|Alphaproteobacteria,3JRQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the TrpF family	trpF	-	5.3.1.24	ko:K01817	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03509	RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	PRAI
SX3_k127_2710397_5	1297865.APJD01000028_gene5240	4.518e-74	251.0	COG5416@1|root,COG5416@2|Bacteria,1N7CU@1224|Proteobacteria,2UF9B@28211|Alphaproteobacteria,3JYSJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lipopolysaccharide assembly protein A domain	-	-	-	-	-	-	-	-	-	-	-	-	LapA_dom
SX3_k127_2710397_7	1297865.APJD01000028_gene5239	3.042e-63	218.0	COG0776@1|root,COG0776@2|Bacteria,1MZ7M@1224|Proteobacteria,2UBR5@28211|Alphaproteobacteria,3JZPG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	himD	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009889,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2001141	-	ko:K05788	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
SX3_k127_2710397_2	1297865.APJD01000028_gene5238	1.324e-199	624.0	COG0616@1|root,COG0616@2|Bacteria,1MUXE@1224|Proteobacteria,2TSXA@28211|Alphaproteobacteria,3JSKK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OU	signal peptide peptidase SppA	sppA	-	-	ko:K04773	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_S49
SX3_k127_2710397_1	1297865.APJD01000028_gene5237	3.73e-243	753.0	COG0539@1|root,COG0539@2|Bacteria,1MVAV@1224|Proteobacteria,2TQPV@28211|Alphaproteobacteria,3JUJY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	rpsA	-	-	ko:K02945	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	S1
SX3_k127_2713118_3	1297865.APJD01000006_gene4426	6.844e-152	481.0	COG1376@1|root,COG1376@2|Bacteria,1R4G7@1224|Proteobacteria,2U17V@28211|Alphaproteobacteria,3JV3J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	TAT_signal,YkuD
SX3_k127_2713118_4	316056.RPC_3668	2.387e-149	481.0	COG2267@1|root,COG2267@2|Bacteria,1QU3E@1224|Proteobacteria,2TVXS@28211|Alphaproteobacteria,3JRB5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	pip	-	3.4.11.5,3.5.1.101	ko:K01259,ko:K18457	ko00330,map00330	-	R00135	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1
SX3_k127_2713118_0	1297865.APJD01000006_gene4428	2.937e-274	846.0	COG0535@1|root,COG0535@2|Bacteria,1MUQP@1224|Proteobacteria,2TTS5@28211|Alphaproteobacteria,3JS8R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	biosynthesis protein E	pqqE	-	-	ko:K06139	-	-	-	-	ko00000	-	-	-	Fer4_12,Radical_SAM,SPASM
SX3_k127_2713118_5	1297865.APJD01000006_gene4429	2.147e-57	202.0	COG0535@1|root,COG0535@2|Bacteria,1N7TR@1224|Proteobacteria,2UFAS@28211|Alphaproteobacteria,3JZD3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	peptidyl-tyrosine modification	pqqD	-	-	ko:K06138	-	-	-	-	ko00000	-	-	-	PqqD
SX3_k127_2713118_2	172088.AUGA01000004_gene4094	2.763e-163	527.0	COG5424@1|root,COG5424@2|Bacteria,1MW7G@1224|Proteobacteria,2TSQT@28211|Alphaproteobacteria,3JREV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ	pqqC	-	1.3.3.11	ko:K06136,ko:K06137	-	-	-	-	ko00000,ko01000	-	-	-	TENA_THI-4
SX3_k127_2713118_1	1297865.APJD01000006_gene4431	8.401e-202	629.0	COG1235@1|root,COG1235@2|Bacteria,1MWI5@1224|Proteobacteria,2TQX4@28211|Alphaproteobacteria,3JRTT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	May be involved in the transport of PQQ or its precursor to the periplasm	pqqB	-	-	ko:K06136	-	-	-	-	ko00000	-	-	-	Lactamase_B_2
SX3_k127_2716883_7	1297865.APJD01000006_gene4403	1.342e-120	387.0	COG0561@1|root,COG0561@2|Bacteria,1MXIH@1224|Proteobacteria,2TTNZ@28211|Alphaproteobacteria,3JQTP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sucrose-6F-phosphate phosphohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_3
SX3_k127_2716883_5	1297865.APJD01000006_gene4402	0.0	1254.0	COG3387@1|root,COG3387@2|Bacteria,1MV08@1224|Proteobacteria,2TRMQ@28211|Alphaproteobacteria,3JRQ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glycosyl hydrolases family 15	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_15
SX3_k127_2716883_4	1297865.APJD01000006_gene4401	0.0	1360.0	COG1640@1|root,COG1640@2|Bacteria,1QTVJ@1224|Proteobacteria,2TW4K@28211|Alphaproteobacteria,3JR1W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	4-alpha-glucanotransferase	malQ	-	2.4.1.25,5.4.99.15	ko:K00705,ko:K06044	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R01824,R05196,R09995	RC00049	ko00000,ko00001,ko00002,ko01000	-	GH13,GH77	-	Alpha-amylase,Glyco_hydro_77
SX3_k127_2716883_3	1297865.APJD01000006_gene4400	0.0	1368.0	COG0366@1|root,COG0366@2|Bacteria,1MWBZ@1224|Proteobacteria,2TVJ1@28211|Alphaproteobacteria,3JTJN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB	glgE	-	2.4.99.16	ko:K16147	ko00500,ko01100,map00500,map01100	-	R09994	-	ko00000,ko00001,ko01000	-	GH13	-	Alpha-amylase,DUF3416,Malt_amylase_C
SX3_k127_2716883_0	1297865.APJD01000006_gene4399	0.0	2269.0	COG0366@1|root,COG3281@1|root,COG0366@2|Bacteria,COG3281@2|Bacteria,1MVKX@1224|Proteobacteria,2TRS3@28211|Alphaproteobacteria,3JT1J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Maltogenic Amylase, C-terminal domain	treS	-	3.2.1.1,5.4.99.16	ko:K05343	ko00500,ko01100,map00500,map01100	-	R01557,R02108,R02112,R11262	RC01816	ko00000,ko00001,ko01000	-	GH13	-	APH,Alpha-amylase,Malt_amylase_C
SX3_k127_2716883_1	1297865.APJD01000006_gene4398	0.0	1558.0	COG0296@1|root,COG0296@2|Bacteria,1QTVN@1224|Proteobacteria,2TR5K@28211|Alphaproteobacteria,3JUN5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position	glgB	-	2.4.1.18	ko:K00700	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R02110	-	ko00000,ko00001,ko00002,ko01000,ko04147	-	CBM48,GH13	-	Alpha-amylase,Alpha-amylase_C,CBM_48
SX3_k127_2716883_2	1297865.APJD01000006_gene4397	0.0	1457.0	COG1523@1|root,COG1523@2|Bacteria,1MU19@1224|Proteobacteria,2TRVS@28211|Alphaproteobacteria,3JR1B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the glycosyl hydrolase 13 family	MA20_00910	-	3.2.1.196,3.2.1.68	ko:K01214,ko:K02438	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R02111,R09995,R11261	-	ko00000,ko00001,ko00002,ko01000	-	CBM48,GH13	-	Alpha-amylase,CBM_48
SX3_k127_2716883_6	1297865.APJD01000006_gene4396	3.632e-194	613.0	COG0296@1|root,COG0296@2|Bacteria,1MVM7@1224|Proteobacteria,2TQUJ@28211|Alphaproteobacteria,3JUR0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	4-alpha-D-((1- 4)-alpha-D-glucano)trehalose trehalohydrolase	treZ	-	2.4.1.18,3.2.1.141	ko:K00700,ko:K01236	ko00500,ko01100,ko01110,map00500,map01100,map01110	M00565	R02110,R09995,R11256	RC00049	ko00000,ko00001,ko00002,ko01000,ko04147	-	CBM48,GH13	-	Alpha-amylase,CBM_48,DUF3459
SX3_k127_2719557_1	1297865.APJD01000006_gene4551	0.0	1201.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,3JQZ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter transmembrane region	exsA	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_2719557_2	1297865.APJD01000006_gene4550	0.0	1056.0	COG0477@1|root,COG0477@2|Bacteria,1RGPN@1224|Proteobacteria,2TQKW@28211|Alphaproteobacteria,3JUF3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	major facilitator superfamily	vceB	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
SX3_k127_2719557_3	1297865.APJD01000006_gene4549	1.292e-247	768.0	COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,2TS39@28211|Alphaproteobacteria,3JS7T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	HlyD membrane-fusion protein of T1SS	vceA	GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0042221,GO:0046677,GO:0050896,GO:0051716	-	ko:K03543	-	M00701	-	-	ko00000,ko00002,ko02000	8.A.1.1	-	-	Biotin_lipoyl_2,HlyD,HlyD_3,HlyD_D23
SX3_k127_2719557_4	1297865.APJD01000006_gene4548	1.629e-134	429.0	COG1309@1|root,COG1309@2|Bacteria,1MZ9E@1224|Proteobacteria,2U0MU@28211|Alphaproteobacteria,3JU2R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AefR-like transcriptional repressor, C-terminal region	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_7,TetR_N
SX3_k127_2719557_10	1230476.C207_05805	4.797e-09	58.0	COG0346@1|root,COG0346@2|Bacteria,1MXNZ@1224|Proteobacteria,2VG67@28211|Alphaproteobacteria,3JXZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.14	ko:K10621	ko00362,ko00622,ko01120,ko01220,map00362,map00622,map01120,map01220	M00539	R01507,R05248	RC00387,RC01308	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_2719557_9	1230476.C207_05728	2.231e-56	198.0	COG0640@1|root,COG0640@2|Bacteria,1MZAU@1224|Proteobacteria,2U9NV@28211|Alphaproteobacteria,3JZQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	ko:K03892	-	-	-	-	ko00000,ko03000	-	-	-	HTH_20
SX3_k127_2719557_6	1297865.APJD01000006_gene4547	1.719e-100	328.0	COG0346@1|root,COG0346@2|Bacteria,1RHIV@1224|Proteobacteria,2TR4K@28211|Alphaproteobacteria,3JY40@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	glyoxalase bleomycin resistance protein dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_2719557_7	1297865.APJD01000006_gene4546	1.017e-85	284.0	COG1393@1|root,COG1393@2|Bacteria,1MZ4Z@1224|Proteobacteria,2U70U@28211|Alphaproteobacteria,3JZ12@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	arsenate reductase	arsC	-	1.20.4.1	ko:K00537	-	-	-	-	ko00000,ko01000	-	-	-	Acetyltransf_1,ArsC
SX3_k127_2719557_5	1297865.APJD01000006_gene4545	2.184e-133	429.0	COG0580@1|root,COG0580@2|Bacteria,1PPTN@1224|Proteobacteria,2TW8M@28211|Alphaproteobacteria,3JRC9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the MIP aquaporin (TC 1.A.8) family	aqpZ	-	-	-	-	-	-	-	-	-	-	-	MIP
SX3_k127_2719557_0	1297865.APJD01000006_gene4544	0.0	1854.0	COG0657@1|root,COG2072@1|root,COG0657@2|Bacteria,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TRG4@28211|Alphaproteobacteria,3JRSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	MA20_02535	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3,FMO-like,Pyr_redox_2,Pyr_redox_3
SX3_k127_2719557_8	1297865.APJD01000006_gene4543	3.878e-64	219.0	COG2020@1|root,COG2020@2|Bacteria,1MWU6@1224|Proteobacteria,2TU80@28211|Alphaproteobacteria,3JQR6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	methyltransferase activity	-	-	2.1.1.334	ko:K21310	ko00920,map00920	-	R11546	RC02653	ko00000,ko00001,ko01000	-	-	-	NnrU,PEMT
SX3_k127_2722780_2	1297865.APJD01000007_gene1816	8.085e-222	687.0	COG0654@1|root,COG0654@2|Bacteria,1MX9R@1224|Proteobacteria,2TR4U@28211|Alphaproteobacteria,3JSWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.14.13.127	ko:K05712,ko:K20218	ko00360,ko00623,ko01120,ko01220,map00360,map00623,map01120,map01220	M00545	R06786,R06787,R11197,R11198	RC00236,RC00389	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_2722780_5	1449353.JQMQ01000005_gene3365	4.325e-50	183.0	COG3193@1|root,COG3193@2|Bacteria,2IG7N@201174|Actinobacteria	201174|Actinobacteria	S	Haem-degrading	-	-	-	-	-	-	-	-	-	-	-	-	Haem_degrading
SX3_k127_2722780_0	1297865.APJD01000007_gene1818	1.572e-314	964.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JXVZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldedh
SX3_k127_2722780_1	1297865.APJD01000007_gene1819	3.704e-311	956.0	COG1906@1|root,COG1906@2|Bacteria,1MXZB@1224|Proteobacteria,2TSPA@28211|Alphaproteobacteria,3JW6I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	membrane	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2722780_3	1297865.APJD01000007_gene1820	2.958e-166	526.0	COG5424@1|root,COG5424@2|Bacteria,1PVPF@1224|Proteobacteria,2U38I@28211|Alphaproteobacteria,3JTYQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Iron-containing redox enzyme	-	-	1.3.3.11	ko:K06137	-	-	-	-	ko00000,ko01000	-	-	-	Haem_oxygenas_2
SX3_k127_2722780_4	1297865.APJD01000007_gene1821	7.712e-71	245.0	COG0633@1|root,COG0633@2|Bacteria,1RK28@1224|Proteobacteria,2UEUB@28211|Alphaproteobacteria,3JZ80@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	2Fe-2S iron-sulfur cluster binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Fer2
SX3_k127_2722780_6	1297865.APJD01000007_gene1822	2.955e-22	95.0	COG0633@1|root,COG0633@2|Bacteria,1NAHM@1224|Proteobacteria,2UAQX@28211|Alphaproteobacteria,3JZKH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Ferredoxin	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_272294_21	1297865.APJD01000026_gene2611	1.689e-15	75.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JU8M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	mdtC	-	-	ko:K07789	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
SX3_k127_272294_7	1297865.APJD01000026_gene2610	1.924e-151	479.0	COG3148@1|root,COG3148@2|Bacteria,1MZCN@1224|Proteobacteria,2U1C3@28211|Alphaproteobacteria,3JR4C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DTW	MA20_30020	-	-	ko:K05812	-	-	-	-	ko00000	-	-	-	DTW
SX3_k127_272294_19	1297865.APJD01000026_gene2609	1.301e-31	126.0	2AKWM@1|root,31BQ1@2|Bacteria,1N9RK@1224|Proteobacteria,2UG8K@28211|Alphaproteobacteria,3K19U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_272294_12	1297865.APJD01000026_gene2608	2.111e-122	394.0	COG1309@1|root,COG1309@2|Bacteria,1R13H@1224|Proteobacteria,2U3E6@28211|Alphaproteobacteria,3JVTW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_272294_16	1297865.APJD01000026_gene2607	9.759e-98	319.0	COG5500@1|root,COG5500@2|Bacteria,1N0PP@1224|Proteobacteria,2U7MA@28211|Alphaproteobacteria,3JYWD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1772)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1772
SX3_k127_272294_20	1297865.APJD01000026_gene2606	1.883e-29	117.0	2A1NR@1|root,30PX3@2|Bacteria,1N8DB@1224|Proteobacteria,2UGBC@28211|Alphaproteobacteria,3K141@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_272294_10	1297865.APJD01000026_gene2605	7.339e-133	427.0	COG2518@1|root,COG2518@2|Bacteria,1RD6S@1224|Proteobacteria,2U704@28211|Alphaproteobacteria,3JSMP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)	pcm2	-	2.1.1.77	ko:K00573	-	-	-	-	ko00000,ko01000	-	-	-	PCMT
SX3_k127_272294_2	1297865.APJD01000026_gene2604	6.459e-271	837.0	COG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,2TR3S@28211|Alphaproteobacteria,3JSNE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	outer membrane protein, TolC	tolC	-	-	ko:K12340	ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133	M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko02044	1.B.17,2.A.6.2	-	-	OEP
SX3_k127_272294_9	1297865.APJD01000026_gene2603	2.001e-135	434.0	COG3827@1|root,COG3827@2|Bacteria,1MX61@1224|Proteobacteria,2TSG8@28211|Alphaproteobacteria,3JS94@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2497)	-	-	-	ko:K09991	-	-	-	-	ko00000	-	-	-	DUF2497
SX3_k127_272294_0	1297865.APJD01000026_gene2602	0.0	1973.0	COG0525@1|root,COG0525@2|Bacteria,1MV7B@1224|Proteobacteria,2TS9E@28211|Alphaproteobacteria,3JTU7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner	valS	GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.9	ko:K01873	ko00970,map00970	M00359,M00360	R03665	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1
SX3_k127_272294_11	1297865.APJD01000026_gene2601	1.958e-131	421.0	COG2094@1|root,COG2094@2|Bacteria,1RE0A@1224|Proteobacteria,2U7N6@28211|Alphaproteobacteria,3JRMQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the DNA glycosylase MPG family	-	GO:0003674,GO:0003824,GO:0003905,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360	3.2.2.21	ko:K03652	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Pur_DNA_glyco
SX3_k127_272294_5	1297865.APJD01000026_gene2600	1.101e-212	661.0	COG0320@1|root,COG0320@2|Bacteria,1MVRD@1224|Proteobacteria,2TRP3@28211|Alphaproteobacteria,3JQSF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives	lipA	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576	2.8.1.8	ko:K03644	ko00785,ko01100,map00785,map01100	-	R07767,R07768	RC01978	ko00000,ko00001,ko01000	-	-	-	LIAS_N,Radical_SAM
SX3_k127_272294_13	1297865.APJD01000026_gene2599	7.154e-119	383.0	COG0563@1|root,COG0563@2|Bacteria,1N0HQ@1224|Proteobacteria,2UC20@28211|Alphaproteobacteria,3JW3F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Adenylate kinase and related kinases	flaR	-	-	-	-	-	-	-	-	-	-	-	AAA_18
SX3_k127_272294_17	1230476.C207_01017	1.978e-92	306.0	COG2867@1|root,COG2867@2|Bacteria,1RGUH@1224|Proteobacteria,2U7D8@28211|Alphaproteobacteria,3JY38@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Polyketide cyclase / dehydrase and lipid transport	pasT	-	-	ko:K18588	-	-	-	-	ko00000	-	-	-	Polyketide_cyc
SX3_k127_272294_18	1297865.APJD01000026_gene2597	2.464e-66	229.0	2E9ZT@1|root,33457@2|Bacteria,1N7P1@1224|Proteobacteria,2UF38@28211|Alphaproteobacteria,3K1GB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	BA14K-like protein	-	-	-	-	-	-	-	-	-	-	-	-	BA14K
SX3_k127_272294_8	1230476.C207_01020	3.588e-137	437.0	COG0262@1|root,COG0262@2|Bacteria,1R5UU@1224|Proteobacteria,2U45H@28211|Alphaproteobacteria,3JZ11@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	RibD C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	RibD_C
SX3_k127_272294_14	1297865.APJD01000026_gene2595	8.868e-111	363.0	COG1546@1|root,COG1546@2|Bacteria,1RH2Y@1224|Proteobacteria,2U94H@28211|Alphaproteobacteria,3JRAB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the CinA family	cinA	-	3.5.1.42	ko:K03743	ko00760,map00760	-	R02322	RC00100	ko00000,ko00001,ko01000	-	-	-	CinA
SX3_k127_272294_3	1297865.APJD01000026_gene2594	9.228e-261	807.0	COG0245@1|root,COG1211@1|root,COG0245@2|Bacteria,COG1211@2|Bacteria,1MVHA@1224|Proteobacteria,2TRQC@28211|Alphaproteobacteria,3JSCM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	ispDF	-	2.7.7.60,4.6.1.12	ko:K01770,ko:K12506	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05633,R05637	RC00002,RC01440	ko00000,ko00001,ko00002,ko01000	-	-	-	IspD,YgbB
SX3_k127_272294_6	1297865.APJD01000026_gene2593	3.549e-204	637.0	COG0042@1|root,COG0042@2|Bacteria,1MV5V@1224|Proteobacteria,2TRC8@28211|Alphaproteobacteria,3JSGQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines	dusB	-	-	ko:K05540	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Dus
SX3_k127_272294_4	1297865.APJD01000026_gene2592	3.331e-249	772.0	COG3852@1|root,COG3852@2|Bacteria,1MVN6@1224|Proteobacteria,2TQS1@28211|Alphaproteobacteria,3JRY2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Signal transduction histidine kinase, nitrogen specific	ntrB	-	2.7.13.3	ko:K07708	ko02020,map02020	M00497	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS,PAS_4
SX3_k127_272294_1	1297865.APJD01000026_gene2591	3.546e-312	957.0	COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,2TQPG@28211|Alphaproteobacteria,3JSFA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Sigma-54 interaction domain	ntrC	-	-	ko:K07712	ko02020,map02020	M00497	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	HTH_8,Response_reg,Sigma54_activ_2,Sigma54_activat
SX3_k127_272294_15	398525.KB900701_gene5021	3.051e-108	353.0	COG5000@1|root,COG5000@2|Bacteria,1MWKZ@1224|Proteobacteria,2TQTB@28211|Alphaproteobacteria,3JT86@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	ntrY	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.13.3	ko:K13598	ko02020,map02020	M00498	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA,PAS,PAS_4
SX3_k127_2737160_7	1297865.APJD01000014_gene827	7.154e-109	352.0	COG0747@1|root,COG0747@2|Bacteria,1MWBH@1224|Proteobacteria,2TTF4@28211|Alphaproteobacteria,3JVS3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_2737160_10	224911.27352507	4.46e-38	144.0	2A8UX@1|root,30XY6@2|Bacteria,1RHC6@1224|Proteobacteria,2U9D6@28211|Alphaproteobacteria,3JZC8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2737160_2	1230476.C207_00516	0.0	1273.0	COG0330@1|root,COG0330@2|Bacteria,1MW1D@1224|Proteobacteria,2TRE5@28211|Alphaproteobacteria,3JVTX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	SPFH domain / Band 7 family	-	-	-	-	-	-	-	-	-	-	-	-	Band_7
SX3_k127_2737160_5	1297865.APJD01000014_gene829	1.142e-182	574.0	COG1305@1|root,COG1305@2|Bacteria,1R9WH@1224|Proteobacteria,2U80B@28211|Alphaproteobacteria,3JZ3A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Transglutaminase-like superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Transglut_core
SX3_k127_2737160_9	1297865.APJD01000014_gene830	9.91e-96	316.0	COG1321@1|root,COG1321@2|Bacteria,1RH2Z@1224|Proteobacteria,2UA3F@28211|Alphaproteobacteria,3JZ7Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix diphteria tox regulatory element	mntR	-	-	ko:K11924	-	-	-	-	ko00000,ko03000	-	-	-	Fe_dep_repr_C,Fe_dep_repress
SX3_k127_2737160_0	1297865.APJD01000014_gene831	0.0	1876.0	COG1629@1|root,COG3637@1|root,COG3637@2|Bacteria,COG4771@2|Bacteria,1QTS8@1224|Proteobacteria,2TW3Y@28211|Alphaproteobacteria,3K6ZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MP	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_2737160_4	172088.AUGA01000020_gene3489	2.404e-242	752.0	COG3964@1|root,COG3964@2|Bacteria,1MVC7@1224|Proteobacteria,2TSUD@28211|Alphaproteobacteria,3JSBJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase family	MA20_40145	-	3.5.2.3	ko:K01465	ko00240,ko01100,map00240,map01100	M00051	R01993	RC00632	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
SX3_k127_2737160_1	1297865.APJD01000014_gene833	0.0	1298.0	COG0664@1|root,COG1752@1|root,COG0664@2|Bacteria,COG1752@2|Bacteria,1MUM9@1224|Proteobacteria,2TVQR@28211|Alphaproteobacteria,3JUCX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Patatin-like phospholipase	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin,cNMP_binding
SX3_k127_2737160_3	1297865.APJD01000014_gene834	9.582e-268	824.0	COG1063@1|root,COG1063@2|Bacteria,1MV9A@1224|Proteobacteria,2TSWA@28211|Alphaproteobacteria,3JRCS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glucose dehydrogenase C-terminus	MA20_31690	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_2737160_8	1297865.APJD01000014_gene835	1.614e-101	331.0	2DM3Q@1|root,31KK0@2|Bacteria,1RHZE@1224|Proteobacteria,2TZV8@28211|Alphaproteobacteria,3K715@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2737160_6	1297865.APJD01000014_gene836	2.538e-179	561.0	29CTN@1|root,2ZZRT@2|Bacteria,1N1AV@1224|Proteobacteria,2UE3T@28211|Alphaproteobacteria,3K0RH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2737884_8	1297865.APJD01000007_gene2103	1.284e-141	451.0	COG4778@1|root,COG4778@2|Bacteria,1MUPB@1224|Proteobacteria,2TR7T@28211|Alphaproteobacteria,3JU3B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	phnL	GO:0005575,GO:0006793,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0019634,GO:0019637,GO:0019700,GO:0032991,GO:0044237,GO:0046434,GO:0061694,GO:0061695,GO:0071704,GO:1901575,GO:1902494,GO:1990234	2.7.8.37	ko:K05780	ko00440,map00440	-	R10185	RC00005,RC00063	ko00000,ko00001,ko01000	-	-	-	ABC_tran
SX3_k127_2737884_4	1297865.APJD01000007_gene2104	8.405e-246	760.0	COG3454@1|root,COG3454@2|Bacteria,1MV7H@1224|Proteobacteria,2TQMS@28211|Alphaproteobacteria,3JTGF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Amidohydrolase family	phnM	-	3.6.1.63	ko:K06162	ko00440,map00440	-	R10186	RC00002	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
SX3_k127_2737884_11	1297865.APJD01000007_gene2105	6.709e-116	379.0	COG3709@1|root,COG3709@2|Bacteria,1RGXZ@1224|Proteobacteria,2UC24@28211|Alphaproteobacteria,3JUG6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)	phnN	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006015,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019200,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019693,GO:0033863,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046391,GO:0046483,GO:0046496,GO:0046835,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.4.23	ko:K05774	ko00030,map00030	-	R06836	RC00002	ko00000,ko00001,ko01000	-	-	-	AAA_18,AAA_33,Guanylate_kin
SX3_k127_2737884_9	1297865.APJD01000007_gene2106	1.098e-132	423.0	COG3576@1|root,COG3576@2|Bacteria,1MWG9@1224|Proteobacteria,2TSKK@28211|Alphaproteobacteria,3JRJT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Pyridoxamine 5'-phosphate oxidase	MA20_21430	-	-	ko:K07006	-	-	-	-	ko00000	-	-	-	Putative_PNPOx
SX3_k127_2737884_10	1230476.C207_02989	4.466e-118	380.0	COG1309@1|root,COG1309@2|Bacteria,1NCEF@1224|Proteobacteria,2TR7K@28211|Alphaproteobacteria,3JSCU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	tetR family	MA20_26860	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_2737884_3	1230476.C207_02988	4.317e-250	773.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,2TSWK@28211|Alphaproteobacteria,3JSYN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	mexE	-	-	ko:K18901	-	M00698	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_2737884_1	1297865.APJD01000007_gene2109	0.0	2016.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JRP3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Efflux pump membrane transporter	MA20_26850	-	-	ko:K18299,ko:K18902,ko:K19594	-	M00641,M00698,M00768,M00769	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2,2.A.6.2.16,2.A.6.2.25,2.A.6.2.34	-	-	ACR_tran
SX3_k127_2737884_15	1230476.C207_02986	3.569e-36	138.0	2AB11@1|root,310EM@2|Bacteria,1MZE3@1224|Proteobacteria,2UD0U@28211|Alphaproteobacteria,3K0EX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2737884_7	1297865.APJD01000007_gene2111	2.535e-165	520.0	COG1028@1|root,COG1028@2|Bacteria,1MUFX@1224|Proteobacteria,2TRWN@28211|Alphaproteobacteria,3JSZZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_17615	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_2737884_12	1297865.APJD01000007_gene2112	4.948e-115	372.0	COG2128@1|root,COG2128@2|Bacteria,1PNA5@1224|Proteobacteria,2U0KT@28211|Alphaproteobacteria,3JSXF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carboxymuconolactone decarboxylase family	-	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_2737884_5	1297865.APJD01000007_gene2113	4.972e-213	661.0	28HWH@1|root,2Z82E@2|Bacteria,1MUF7@1224|Proteobacteria,2TV8Z@28211|Alphaproteobacteria,3JV6A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2737884_0	1297865.APJD01000007_gene2114	0.0	2322.0	COG1014@1|root,COG4231@1|root,COG1014@2|Bacteria,COG4231@2|Bacteria,1MUKS@1224|Proteobacteria,2TSHH@28211|Alphaproteobacteria,3JSRZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Pyruvate ferredoxin/flavodoxin oxidoreductase	MA20_17555	-	1.2.7.8	ko:K04090	-	-	-	-	br01601,ko00000,ko01000	-	-	-	POR,TPP_enzyme_C
SX3_k127_2737884_14	1230476.C207_02981	6.63e-73	247.0	2BU3E@1|root,32PC7@2|Bacteria,1RFB0@1224|Proteobacteria,2U7C1@28211|Alphaproteobacteria,3JYSA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2737884_16	1230476.C207_02980	2.762e-14	75.0	COG3540@1|root,COG3540@2|Bacteria,1MWAF@1224|Proteobacteria,2TS7J@28211|Alphaproteobacteria,3JRAS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	PhoD-like phosphatase	phoD	-	3.1.3.1	ko:K01113	ko00790,ko01100,ko02020,map00790,map01100,map02020	M00126	R04620	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PhoD,PhoD_N
SX3_k127_2737884_6	1297865.APJD01000007_gene2116	3.485e-211	657.0	COG0656@1|root,COG0656@2|Bacteria,1MWFS@1224|Proteobacteria,2TT2Q@28211|Alphaproteobacteria,3JUXB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aldo/keto reductase family	dkgB	-	1.1.1.346	ko:K06222	-	-	-	-	ko00000,ko01000	-	-	-	Aldo_ket_red
SX3_k127_2737884_2	1297865.APJD01000007_gene2118	1.231e-262	812.0	COG3964@1|root,COG3964@2|Bacteria,1MVC7@1224|Proteobacteria,2TSUD@28211|Alphaproteobacteria,3JSBJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase family	-	-	3.5.2.3	ko:K01465	ko00240,ko01100,map00240,map01100	M00051	R01993	RC00632	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
SX3_k127_2737884_13	1297865.APJD01000007_gene2119	1.582e-80	268.0	COG1167@1|root,COG1167@2|Bacteria,1MV6F@1224|Proteobacteria,2TR7I@28211|Alphaproteobacteria,3JRS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EK	Alanine-glyoxylate amino-transferase	MA20_07365	-	-	ko:K00375,ko:K05825	ko00300,ko01100,ko01130,ko01210,map00300,map01100,map01130,map01210	-	R01939	RC00006	ko00000,ko00001,ko01000,ko03000	-	-	-	Aminotran_1_2,GntR
SX3_k127_2743175_3	1297865.APJD01000024_gene416	1.809e-91	301.0	COG5343@1|root,COG5343@2|Bacteria,1N821@1224|Proteobacteria,2UF3V@28211|Alphaproteobacteria,3JR0Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Anti-sigma-K factor rskA	-	-	-	-	-	-	-	-	-	-	-	-	RskA
SX3_k127_2743175_0	1297865.APJD01000024_gene415	3.733e-261	807.0	COG0654@1|root,COG0654@2|Bacteria,1NUP2@1224|Proteobacteria,2U826@28211|Alphaproteobacteria	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3,NAD_binding_8
SX3_k127_2743175_4	1297865.APJD01000024_gene414	6.716e-82	274.0	COG1846@1|root,COG1846@2|Bacteria,1RJ2M@1224|Proteobacteria,2U136@28211|Alphaproteobacteria,3JWAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_2743175_5	1297865.APJD01000024_gene413	7.663e-64	218.0	2EGW4@1|root,33ANC@2|Bacteria,1NJAB@1224|Proteobacteria,2UMDZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2743175_1	1297865.APJD01000024_gene412	1.323e-168	532.0	COG0583@1|root,COG0583@2|Bacteria,1R3Y4@1224|Proteobacteria,2UCEN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2743175_6	1297865.APJD01000024_gene411	5.498e-33	130.0	2BP6F@1|root,32HXN@2|Bacteria,1N7T4@1224|Proteobacteria,2UFU3@28211|Alphaproteobacteria,3K1DA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2743175_2	1297865.APJD01000024_gene410	2.931e-105	342.0	COG1298@1|root,COG1298@2|Bacteria,1MUF3@1224|Proteobacteria,2TQUR@28211|Alphaproteobacteria,3JR3G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin	flhA	-	-	ko:K02400	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FHIPEP
SX3_k127_275157_4	1297865.APJD01000003_gene6313	1.303e-37	143.0	2A6TC@1|root,30VMM@2|Bacteria,1N1QS@1224|Proteobacteria,2UCRY@28211|Alphaproteobacteria,3K09H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_275157_0	1297865.APJD01000003_gene6312	0.0	1690.0	COG0058@1|root,COG0058@2|Bacteria,1MW4J@1224|Proteobacteria,2TRER@28211|Alphaproteobacteria,3JR6I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties	glgP	GO:0000272,GO:0003674,GO:0003824,GO:0004645,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0008144,GO:0008150,GO:0008152,GO:0008184,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0015980,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0055114,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901575	2.4.1.1	ko:K00688	ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931	-	R02111	-	ko00000,ko00001,ko01000	-	GT35	-	Phosphorylase
SX3_k127_275157_3	1297865.APJD01000003_gene6311	4.353e-183	572.0	COG2050@1|root,COG2050@2|Bacteria,1N23V@1224|Proteobacteria,2TVHY@28211|Alphaproteobacteria,3JQXW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase-like superfamily	MA20_19915	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
SX3_k127_275157_2	1297865.APJD01000003_gene6310	5.596e-213	662.0	COG0010@1|root,COG0010@2|Bacteria,1MVFH@1224|Proteobacteria,2TRTG@28211|Alphaproteobacteria,3JQSW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the arginase family	rocF	-	3.5.3.1	ko:K01476	ko00220,ko00330,ko01100,ko01110,ko01130,ko01230,ko05146,map00220,map00330,map01100,map01110,map01130,map01230,map05146	M00029,M00134	R00551	RC00024,RC00329	ko00000,ko00001,ko00002,ko01000	-	-	-	Arginase
SX3_k127_275157_1	1230476.C207_02819	0.0	1104.0	COG1866@1|root,COG1866@2|Bacteria,1MWXN@1224|Proteobacteria,2TRC4@28211|Alphaproteobacteria,3JRXU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA	pckA	GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0071704,GO:1901576	4.1.1.49	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	M00003,M00170	R00341	RC00002,RC02741	ko00000,ko00001,ko00002,ko01000	-	-	-	PEPCK_ATP
SX3_k127_2759724_3	1297865.APJD01000001_gene5988	1.205e-82	278.0	COG0757@1|root,COG0757@2|Bacteria,1RDDT@1224|Proteobacteria,2U9BV@28211|Alphaproteobacteria,3JY37@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes a trans-dehydration via an enolate intermediate	aroQ	-	4.2.1.10	ko:K03786	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R03084	RC00848	ko00000,ko00001,ko00002,ko01000	-	-	-	DHquinase_II
SX3_k127_2759724_2	1297865.APJD01000001_gene5987	6.876e-140	446.0	COG3064@1|root,COG3064@2|Bacteria,1MXS9@1224|Proteobacteria,2TV4F@28211|Alphaproteobacteria,3JXNR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF1236)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1236
SX3_k127_2759724_1	1297865.APJD01000001_gene5986	2.894e-158	502.0	COG1651@1|root,COG1651@2|Bacteria,1MY3H@1224|Proteobacteria,2TTXR@28211|Alphaproteobacteria,3JSBQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Thioredoxin	MA20_29175	-	-	-	-	-	-	-	-	-	-	-	DSBA,Thioredoxin_4
SX3_k127_2759724_0	1297865.APJD01000001_gene5985	1.764e-292	905.0	COG4783@1|root,COG4783@2|Bacteria,1MVFV@1224|Proteobacteria,2TTV2@28211|Alphaproteobacteria,3JSBC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase family M48	MA20_29180	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M48,TPR_16,TPR_19
SX3_k127_2766169_3	1297865.APJD01000001_gene5898	1.773e-134	430.0	2BITE@1|root,32D15@2|Bacteria,1PUZ5@1224|Proteobacteria,2UNBH@28211|Alphaproteobacteria,3K28M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	VPEP
SX3_k127_2766169_0	1297865.APJD01000001_gene5896	4.648e-200	625.0	2DNBF@1|root,32WM0@2|Bacteria,1MYQR@1224|Proteobacteria,2U4D3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	VPEP
SX3_k127_2766169_1	1297865.APJD01000001_gene5895	2.757e-197	615.0	COG0583@1|root,COG0583@2|Bacteria,1MX24@1224|Proteobacteria,2U7M4@28211|Alphaproteobacteria,3K67K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2766169_5	1230476.C207_01414	2.473e-47	172.0	29CEH@1|root,2ZZCY@2|Bacteria,1MZYP@1224|Proteobacteria,2UDYN@28211|Alphaproteobacteria,3JZUG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PilZ domain	MA20_30380	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_2766169_6	1297865.APJD01000001_gene5893	3.183e-45	164.0	29D1A@1|root,2ZZZC@2|Bacteria,1N280@1224|Proteobacteria,2UDNY@28211|Alphaproteobacteria,3K0HG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	-	-	-	-	-	-	-	-	-	-	-	-	Porin_2
SX3_k127_2766169_2	1297865.APJD01000001_gene5892	4.448e-143	455.0	COG0625@1|root,COG0625@2|Bacteria,1RA4M@1224|Proteobacteria,2TV0I@28211|Alphaproteobacteria,3JTZ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_2778071_6	1297865.APJD01000005_gene4008	1.012e-90	302.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,3JV1M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TIGRFAM filamentous haemagglutinin family outer membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF3739,Haemagg_act
SX3_k127_2778071_5	1297865.APJD01000005_gene4007	1.3e-104	342.0	2E9H8@1|root,333QC@2|Bacteria,1RGCB@1224|Proteobacteria,2U7G0@28211|Alphaproteobacteria,3JZ7E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	ko:K02463	ko05111,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	-
SX3_k127_2778071_1	1297865.APJD01000005_gene4006	0.0	1413.0	28JU5@1|root,2Z9J8@2|Bacteria,1NW3A@1224|Proteobacteria,2U1S6@28211|Alphaproteobacteria,3JVMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2778071_0	1297865.APJD01000005_gene4005	0.0	1474.0	COG1450@1|root,COG1450@2|Bacteria,1MUUA@1224|Proteobacteria,2TT8A@28211|Alphaproteobacteria,3JRKS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	general secretion pathway protein D	-	-	-	ko:K02453	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	Secretin,Secretin_N
SX3_k127_2778071_3	1297865.APJD01000005_gene4004	2.403e-134	429.0	COG3904@1|root,COG3904@2|Bacteria,1R4PW@1224|Proteobacteria,2U3UG@28211|Alphaproteobacteria,3JXXM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	periplasmic protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2778071_8	1297865.APJD01000005_gene4003	2.22e-33	130.0	2CIPF@1|root,2ZZJU@2|Bacteria,1N0PV@1224|Proteobacteria,2UCWG@28211|Alphaproteobacteria,3K04R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2778071_2	1297865.APJD01000005_gene4002	5.075e-265	819.0	COG0389@1|root,COG0389@2|Bacteria,1MUUH@1224|Proteobacteria,2TRWG@28211|Alphaproteobacteria,3JXFK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII	-	-	2.7.7.7	ko:K02346	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	IMS,IMS_C
SX3_k127_2778071_7	1297865.APJD01000005_gene4001	2.355e-52	184.0	2ABSS@1|root,31199@2|Bacteria,1N1BZ@1224|Proteobacteria,2UCJ6@28211|Alphaproteobacteria,3K0DV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2778071_4	1297865.APJD01000005_gene4000	1.579e-113	366.0	COG1028@1|root,COG1028@2|Bacteria,1R7E3@1224|Proteobacteria,2U385@28211|Alphaproteobacteria,3JUEW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_2813737_0	1297865.APJD01000043_gene5807	0.0	1247.0	COG0243@1|root,COG0243@2|Bacteria,1NR6J@1224|Proteobacteria,2TTAY@28211|Alphaproteobacteria,3JSTW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family	MA20_38000	-	-	-	-	-	-	-	-	-	-	-	Molybdop_Fe4S4,Molybdopterin,Molydop_binding
SX3_k127_2813737_2	1297865.APJD01000043_gene5806	9.823e-165	519.0	COG1024@1|root,COG1024@2|Bacteria,1MVEC@1224|Proteobacteria,2TT0I@28211|Alphaproteobacteria,3JUUI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_37995	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_2813737_3	1336243.JAEA01000008_gene1081	2.176e-115	386.0	COG0582@1|root,COG0582@2|Bacteria,1R3WY@1224|Proteobacteria,2U162@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	viral genome integration into host DNA	-	-	-	-	-	-	-	-	-	-	-	-	Phage_integrase
SX3_k127_2813737_4	319003.Bra1253DRAFT_02714	7.541e-30	125.0	2A84W@1|root,30X5N@2|Bacteria,1RFKK@1224|Proteobacteria,2U838@28211|Alphaproteobacteria,3JZYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2813737_1	1037409.BJ6T_20510	5.347e-188	590.0	COG1475@1|root,COG1475@2|Bacteria,1MVF9@1224|Proteobacteria,2TR0P@28211|Alphaproteobacteria,3JSCN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
SX3_k127_2817948_12	1297865.APJD01000026_gene2559	3.886e-118	382.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JWY5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	-	-	-	ko:K04116	ko00362,ko01120,map00362,map01120	M00540	R05620	RC00004,RC01438	ko00000,ko00001,ko00002,ko01000	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_2817948_8	1297865.APJD01000026_gene2560	1.928e-156	499.0	COG1024@1|root,COG1024@2|Bacteria,1RAIA@1224|Proteobacteria,2U8AP@28211|Alphaproteobacteria,3K5ZD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_2817948_6	1297865.APJD01000026_gene2561	7.144e-188	588.0	COG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,2U149@28211|Alphaproteobacteria,3K38X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_2817948_15	1297865.APJD01000026_gene2562	3.354e-88	294.0	COG1846@1|root,COG1846@2|Bacteria,1MZY5@1224|Proteobacteria,2UDHZ@28211|Alphaproteobacteria,3K1ER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_2817948_7	1297865.APJD01000026_gene2563	2.078e-181	569.0	COG1028@1|root,COG1028@2|Bacteria,1MXNQ@1224|Proteobacteria,2TUHP@28211|Alphaproteobacteria,3JX3S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_2817948_1	1297865.APJD01000026_gene2564	2.955e-269	829.0	COG0683@1|root,COG0683@2|Bacteria,1QQMX@1224|Proteobacteria,2U56I@28211|Alphaproteobacteria,3JVF0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_2817948_5	1297865.APJD01000026_gene2565	1.975e-195	611.0	COG3181@1|root,COG3181@2|Bacteria,1NATK@1224|Proteobacteria,2U2MD@28211|Alphaproteobacteria,3JXN1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_2817948_13	1297865.APJD01000026_gene2566	2.007e-104	344.0	2ADMK@1|root,313CA@2|Bacteria,1N69P@1224|Proteobacteria,2UE1J@28211|Alphaproteobacteria,3K0FQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2817948_3	1297865.APJD01000026_gene2567	8.983e-215	668.0	COG2159@1|root,COG2159@2|Bacteria,1R5PG@1224|Proteobacteria,2U2G9@28211|Alphaproteobacteria,3JWBY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	4.1.1.45	ko:K03392	ko00380,ko01100,map00380,map01100	M00038	R04323	RC00779	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_2
SX3_k127_2817948_2	1297865.APJD01000026_gene2568	6.501e-253	790.0	COG0446@1|root,COG0446@2|Bacteria,1NR3M@1224|Proteobacteria,2U2VC@28211|Alphaproteobacteria,3JVVI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Reductase C-terminal	-	-	1.18.1.3	ko:K00529	ko00071,ko00360,ko01120,ko01220,map00071,map00360,map01120,map01220	M00545	R02000,R06782,R06783	RC00098	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Pyr_redox_2,Reductase_C
SX3_k127_2817948_0	1297865.APJD01000026_gene2569	3.666e-291	893.0	COG4638@1|root,COG4638@2|Bacteria,1N6MJ@1224|Proteobacteria,2TV8C@28211|Alphaproteobacteria,3K651@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	1.14.12.25	ko:K10619	ko00622,ko01120,ko01220,map00622,map01120,map01220	M00539	R05247	RC00267	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,Ring_hydroxyl_A
SX3_k127_2817948_14	1297865.APJD01000026_gene2570	1.691e-98	323.0	COG5517@1|root,COG5517@2|Bacteria,1RCT2@1224|Proteobacteria,2U8ZF@28211|Alphaproteobacteria,3JZ1I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Ring hydroxylating beta subunit	-	-	1.14.12.25	ko:K16303	ko00622,ko01120,ko01220,map00622,map01120,map01220	M00539	R05247	RC00267	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Ring_hydroxyl_B
SX3_k127_2817948_9	1297865.APJD01000026_gene2571	4.643e-154	492.0	COG1028@1|root,COG1028@2|Bacteria,1MW50@1224|Proteobacteria,2TRUZ@28211|Alphaproteobacteria,3JVT7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	1.3.1.58	ko:K10620	ko00622,ko01120,ko01220,map00622,map01120,map01220	M00539	R05240	RC00057	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short_C2
SX3_k127_2817948_16	1297865.APJD01000026_gene2572	2.133e-60	218.0	COG2146@1|root,COG2146@2|Bacteria,1NCKX@1224|Proteobacteria,2UCFA@28211|Alphaproteobacteria,3K05Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske-like [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
SX3_k127_2817948_11	936455.KI421499_gene729	1.47e-125	404.0	COG1309@1|root,COG1309@2|Bacteria,1RAF9@1224|Proteobacteria,2U62G@28211|Alphaproteobacteria,3K0SV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_2817948_4	1297865.APJD01000026_gene2574	5.513e-197	616.0	COG0346@1|root,COG0346@2|Bacteria,1RBGG@1224|Proteobacteria,2U64T@28211|Alphaproteobacteria,3JY2A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.14	ko:K10621	ko00362,ko00622,ko01120,ko01220,map00362,map00622,map01120,map01220	M00539	R01507,R05248	RC00387,RC01308	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_2817948_10	1297865.APJD01000026_gene2575	2.843e-146	463.0	COG0346@1|root,COG0346@2|Bacteria,1MXNZ@1224|Proteobacteria,2VG67@28211|Alphaproteobacteria,3JXZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.14	ko:K10621	ko00362,ko00622,ko01120,ko01220,map00362,map00622,map01120,map01220	M00539	R01507,R05248	RC00387,RC01308	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_2875569_8	1297865.APJD01000014_gene983	1.615e-109	356.0	COG0845@1|root,COG0845@2|Bacteria,1MUFW@1224|Proteobacteria,2U2CU@28211|Alphaproteobacteria,3JQRQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K18306	ko02024,map02024	M00644	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2.20,2.A.6.2.32,8.A.1	-	-	HlyD_D23
SX3_k127_2875569_11	1297865.APJD01000014_gene984	1.409e-94	311.0	COG0789@1|root,COG0789@2|Bacteria,1RH2U@1224|Proteobacteria,2U73A@28211|Alphaproteobacteria,3JYFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, mercury resistance	soxR	-	-	ko:K13639	-	-	-	-	ko00000,ko03000	-	-	-	MerR,MerR-DNA-bind,MerR_1
SX3_k127_2875569_16	398525.KB900701_gene6015	2.738e-46	167.0	COG2261@1|root,COG2261@2|Bacteria,1N88H@1224|Proteobacteria,2UFV9@28211|Alphaproteobacteria,3K0MS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Transglycosylase associated protein	-	-	-	-	-	-	-	-	-	-	-	-	Transgly_assoc
SX3_k127_2875569_0	1297865.APJD01000014_gene986	0.0	1508.0	COG0046@1|root,COG0046@2|Bacteria,1MYN4@1224|Proteobacteria,2TRGM@28211|Alphaproteobacteria,3JRAU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purL	-	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
SX3_k127_2875569_9	1297865.APJD01000014_gene987	3.95e-107	349.0	COG2050@1|root,COG2050@2|Bacteria,1N088@1224|Proteobacteria,2UEDK@28211|Alphaproteobacteria,3JYJ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_2875569_1	1230476.C207_00669	0.0	1411.0	COG1524@1|root,COG1524@2|Bacteria,1PBW4@1224|Proteobacteria,2TSJA@28211|Alphaproteobacteria,3JSNU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Type I phosphodiesterase / nucleotide pyrophosphatase	-	-	-	-	-	-	-	-	-	-	-	-	Phosphodiest
SX3_k127_2875569_7	1297865.APJD01000014_gene990	2.938e-146	465.0	COG0625@1|root,COG0625@2|Bacteria,1R401@1224|Proteobacteria,2U0SE@28211|Alphaproteobacteria,3JXN9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_C_3,GST_N_2,GST_N_3
SX3_k127_2875569_13	1297865.APJD01000014_gene991	7.991e-77	257.0	COG1733@1|root,COG1733@2|Bacteria,1RJHM@1224|Proteobacteria,2UAM5@28211|Alphaproteobacteria,3JZV4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_2875569_2	1297865.APJD01000014_gene992	9.191e-197	617.0	COG0697@1|root,COG0697@2|Bacteria,1MXX1@1224|Proteobacteria,2TQN0@28211|Alphaproteobacteria,3JTCS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_09090	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_2875569_5	1297865.APJD01000014_gene993	5.443e-154	487.0	COG4700@1|root,COG4700@2|Bacteria,1R577@1224|Proteobacteria,2TU7Z@28211|Alphaproteobacteria,3JW2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	PLDc_N,TPR_16,TPR_19,TPR_4
SX3_k127_2875569_3	1297865.APJD01000014_gene994	1.21e-189	594.0	COG3181@1|root,COG3181@2|Bacteria,1MW18@1224|Proteobacteria,2TSKY@28211|Alphaproteobacteria,3JT19@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	MA20_09060	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_2875569_6	1297865.APJD01000014_gene995	2.231e-152	483.0	COG0047@1|root,COG0047@2|Bacteria,1MU4Y@1224|Proteobacteria,2TS67@28211|Alphaproteobacteria,3JT4P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purQ	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	GATase_5
SX3_k127_2875569_10	1297865.APJD01000014_gene996	1.258e-99	332.0	2A9RW@1|root,30YZF@2|Bacteria,1RJRU@1224|Proteobacteria,2UACF@28211|Alphaproteobacteria,3K006@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2875569_17	1230476.C207_00675	4.639e-39	146.0	COG1828@1|root,COG1828@2|Bacteria,1N83G@1224|Proteobacteria,2UF7S@28211|Alphaproteobacteria,3K02S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL	purS	-	6.3.5.3	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04463	RC00010,RC01160	ko00000,ko00001,ko00002,ko01000	-	-	-	PurS
SX3_k127_2875569_4	1230476.C207_00676	3.312e-172	545.0	COG0152@1|root,COG0152@2|Bacteria,1MUR9@1224|Proteobacteria,2TR8D@28211|Alphaproteobacteria,3JQM7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	phosphoribosylaminoimidazole-succinocarboxamide synthase	purC	-	6.3.2.6	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04591	RC00064,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	SAICAR_synt
SX3_k127_2875569_15	1297865.APJD01000014_gene999	1.253e-57	203.0	COG5467@1|root,COG5467@2|Bacteria,1MZRN@1224|Proteobacteria,2UC1G@28211|Alphaproteobacteria,3JZI5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1476)	MA20_09035	-	-	-	-	-	-	-	-	-	-	-	DUF1476
SX3_k127_2875569_14	1297865.APJD01000014_gene1000	2.891e-71	243.0	2ADXD@1|root,313PI@2|Bacteria,1N563@1224|Proteobacteria,2UBQ7@28211|Alphaproteobacteria,3K0C7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2875569_12	1297865.APJD01000014_gene1001	3.413e-90	297.0	COG0583@1|root,COG0583@2|Bacteria,1PMTG@1224|Proteobacteria,2TV35@28211|Alphaproteobacteria,3JU8G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_2882286_0	1297865.APJD01000001_gene5865	2.229e-289	888.0	COG0129@1|root,COG0129@2|Bacteria,1MUTQ@1224|Proteobacteria,2TRTQ@28211|Alphaproteobacteria,3JTGH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the IlvD Edd family	ilvD	GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836	4.2.1.9	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R04441,R05070	RC00468,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
SX3_k127_2882286_2	1297865.APJD01000001_gene5864	2.768e-146	467.0	COG0790@1|root,COG0790@2|Bacteria,1MUGD@1224|Proteobacteria,2TRV0@28211|Alphaproteobacteria,3JQQJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sel1-like repeats.	exoR	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
SX3_k127_2882286_5	172088.AUGA01000029_gene1903	1.457e-11	64.0	COG0790@1|root,COG0790@2|Bacteria,1MUGD@1224|Proteobacteria,2TRV0@28211|Alphaproteobacteria,3JQQJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sel1-like repeats.	exoR	-	-	ko:K07126	-	-	-	-	ko00000	-	-	-	Sel1
SX3_k127_2882286_1	1297865.APJD01000001_gene5863	8.149e-179	559.0	COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,2TR5J@28211|Alphaproteobacteria,3JRXJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	exodeoxyribonuclease III	xth	-	3.1.11.2	ko:K01142	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exo_endo_phos
SX3_k127_2882286_4	1297865.APJD01000001_gene5862	8.45e-87	287.0	COG2153@1|root,COG2153@2|Bacteria,1MZ86@1224|Proteobacteria,2V84Y@28211|Alphaproteobacteria,3JZ9G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_10
SX3_k127_2882286_3	1230476.C207_01445	2.778e-99	328.0	COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,2TV9W@28211|Alphaproteobacteria,3JWYC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Biotin-lipoyl like	-	-	-	ko:K07799	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	8.A.1	-	-	Biotin_lipoyl_2,HlyD_D23
SX3_k127_2897855_3	1297865.APJD01000020_gene125	1.745e-39	148.0	COG0454@1|root,COG0456@2|Bacteria,1N891@1224|Proteobacteria,2U6U9@28211|Alphaproteobacteria,3JZ6N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,Acetyltransf_7
SX3_k127_2897855_1	1297865.APJD01000020_gene124	2.89e-317	972.0	COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,1MU1Q@1224|Proteobacteria,2TT58@28211|Alphaproteobacteria,3JU34@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration	nnrD	-	-	-	-	-	-	-	-	-	-	-	Carb_kinase,YjeF_N
SX3_k127_2897855_2	196490.AUEZ01000022_gene899	2.047e-63	221.0	COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,2U73Z@28211|Alphaproteobacteria,3JYUA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the P(II) protein family	glnB	GO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772	-	ko:K04751	ko02020,map02020	-	-	-	ko00000,ko00001	-	-	-	P-II
SX3_k127_2897855_0	1297865.APJD01000020_gene122	1.45e-321	983.0	COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2TSCR@28211|Alphaproteobacteria,3JTH1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	glutamine synthetase	glnA	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C,Gln-synt_N
SX3_k127_2916391_0	1297865.APJD01000007_gene2265	1.582e-276	850.0	COG0402@1|root,COG0402@2|Bacteria,1MX34@1224|Proteobacteria,2U0IN@28211|Alphaproteobacteria,3JRTY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Amidohydrolase family	-	-	3.5.4.1	ko:K01485	ko00240,ko00330,ko01100,map00240,map00330,map01100	-	R00974,R01411,R02922	RC00074,RC00514,RC00809	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
SX3_k127_2916391_2	1297865.APJD01000007_gene2266	1.964e-89	295.0	COG3631@1|root,COG3631@2|Bacteria,1RAKK@1224|Proteobacteria,2UADV@28211|Alphaproteobacteria,3JY6Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ketosteroid isomerase-related protein	MA20_26675	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
SX3_k127_2916391_1	1297865.APJD01000007_gene2267	5.349e-156	493.0	COG1802@1|root,COG1802@2|Bacteria,1R96W@1224|Proteobacteria,2TV1N@28211|Alphaproteobacteria,3JUWV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	MA20_26680	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_2916391_3	1297865.APJD01000007_gene2268	1.857e-27	113.0	COG1116@1|root,COG1116@2|Bacteria,1P4HB@1224|Proteobacteria,2TUY9@28211|Alphaproteobacteria,3JR2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	MA20_26685	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_2927248_7	1230476.C207_01997	2.244e-24	104.0	COG0624@1|root,COG0624@2|Bacteria,1MUSU@1224|Proteobacteria,2TV23@28211|Alphaproteobacteria,3JSS1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M28	-	-	3.4.17.11	ko:K01295	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_2927248_1	1297865.APJD01000014_gene665	0.0	1035.0	COG4664@1|root,COG4664@2|Bacteria,1R4MZ@1224|Proteobacteria,2TQNR@28211|Alphaproteobacteria,3JUDS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	TRAP C4-dicarboxylate transport system permease DctM subunit	-	-	-	-	-	-	-	-	-	-	-	-	DctM
SX3_k127_2927248_4	1230476.C207_01995	1.97e-110	358.0	COG4665@1|root,COG4665@2|Bacteria,1RHBW@1224|Proteobacteria,2TT9A@28211|Alphaproteobacteria,3JRWB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Tripartite ATP-independent periplasmic transporters, DctQ component	-	-	-	-	-	-	-	-	-	-	-	-	DctQ
SX3_k127_2927248_0	1297865.APJD01000014_gene663	0.0	1295.0	COG3210@1|root,COG3210@2|Bacteria,1N7NF@1224|Proteobacteria,2UIZ1@28211|Alphaproteobacteria,3K1VF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	VPEP
SX3_k127_2927248_2	398525.KB900701_gene4236	3.804e-222	695.0	COG2896@1|root,COG2896@2|Bacteria,1MW3W@1224|Proteobacteria,2TQQP@28211|Alphaproteobacteria,3JR01@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate	moaA	-	4.1.99.22	ko:K03639	ko00790,ko01100,ko04122,map00790,map01100,map04122	-	R09394	RC03420	ko00000,ko00001,ko01000	-	-	-	Fer4_12,Mob_synth_C,Radical_SAM
SX3_k127_2927248_6	1297865.APJD01000014_gene661	2.294e-76	259.0	2C6J4@1|root,2ZDBZ@2|Bacteria,1RHUG@1224|Proteobacteria,2U9TF@28211|Alphaproteobacteria,3JYMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PEGA
SX3_k127_2927248_3	1297865.APJD01000014_gene660	3.393e-137	438.0	COG0546@1|root,COG0546@2|Bacteria,1RDDY@1224|Proteobacteria,2U79T@28211|Alphaproteobacteria,3JVBQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress	gph	-	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	-	R01334	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD_2
SX3_k127_2927248_5	1297865.APJD01000014_gene659	7.172e-105	342.0	COG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,2TSTP@28211|Alphaproteobacteria,3JU6V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_2932347_19	1230476.C207_05510	2.11e-42	155.0	COG0238@1|root,COG0238@2|Bacteria,1MZ8U@1224|Proteobacteria,2UC13@28211|Alphaproteobacteria,3K018@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	rpsR	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02963	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S18
SX3_k127_2932347_17	1230476.C207_05511	7.27e-88	294.0	COG0360@1|root,COG0360@2|Bacteria,1RH82@1224|Proteobacteria,2U767@28211|Alphaproteobacteria,3JQT3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds together with S18 to 16S ribosomal RNA	rpsF	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904	-	ko:K02990	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_S6
SX3_k127_2932347_15	1297865.APJD01000010_gene5046	1.466e-138	442.0	COG1309@1|root,COG1309@2|Bacteria,1R60G@1224|Proteobacteria,2TUEP@28211|Alphaproteobacteria,3JVVX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial transcriptional repressor C-terminal	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_12,TetR_N
SX3_k127_2932347_6	1297865.APJD01000010_gene5047	4.872e-227	704.0	COG3239@1|root,COG3239@2|Bacteria,1MUHK@1224|Proteobacteria,2TSTR@28211|Alphaproteobacteria,3JTTJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Fatty acid desaturase	MA20_28095	-	-	-	-	-	-	-	-	-	-	-	FA_desaturase
SX3_k127_2932347_10	1230476.C207_05514	2.218e-181	570.0	COG0331@1|root,COG0331@2|Bacteria,1MV6N@1224|Proteobacteria,2TRTT@28211|Alphaproteobacteria,3JQU1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	malonyl CoA-acyl carrier protein transacylase	fabD	GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.39	ko:K00645	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	M00082	R01626,R11671	RC00004,RC00039,RC02727	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Acyl_transf_1
SX3_k127_2932347_14	1297865.APJD01000010_gene5049	4.853e-150	475.0	COG1028@1|root,COG1028@2|Bacteria,1MU6X@1224|Proteobacteria,2TQZG@28211|Alphaproteobacteria,3JW0B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	fabG	GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_2932347_20	258594.RPA3073	3.781e-42	154.0	COG0236@1|root,COG0236@2|Bacteria,1MZ4P@1224|Proteobacteria,2UBWW@28211|Alphaproteobacteria,3K039@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Carrier of the growing fatty acid chain in fatty acid biosynthesis	acpP	GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	-	ko:K02078	-	-	-	-	ko00000,ko00001	-	-	-	PP-binding
SX3_k127_2932347_2	1297865.APJD01000010_gene5051	6.13e-267	824.0	COG0304@1|root,COG0304@2|Bacteria,1MU1X@1224|Proteobacteria,2TR32@28211|Alphaproteobacteria,3JU0T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	fabF	GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
SX3_k127_2932347_21	224911.27348412	2.924e-07	53.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2932347_3	1230476.C207_05518	5.049e-260	804.0	COG1559@1|root,COG1559@2|Bacteria,1MUQF@1224|Proteobacteria,2TR89@28211|Alphaproteobacteria,3JSZJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation	mltG	-	-	ko:K07082	-	-	-	-	ko00000	-	-	-	YceG
SX3_k127_2932347_11	1297865.APJD01000010_gene5053	8.674e-179	561.0	COG1561@1|root,COG1561@2|Bacteria,1MWRA@1224|Proteobacteria,2TS81@28211|Alphaproteobacteria,3JTWW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1732)	yicC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	DUF1732,YicC_N
SX3_k127_2932347_16	1297865.APJD01000010_gene5054	2.578e-137	437.0	COG0194@1|root,COG0194@2|Bacteria,1MW92@1224|Proteobacteria,2TSCQ@28211|Alphaproteobacteria,3JQSY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Essential for recycling GMP and indirectly, cGMP	gmk	GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657	2.7.4.8	ko:K00942	ko00230,ko01100,map00230,map01100	M00050	R00332,R02090	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_kin
SX3_k127_2932347_9	1297865.APJD01000010_gene5055	1.11e-191	602.0	29WMY@1|root,30I8S@2|Bacteria,1Q6UD@1224|Proteobacteria,2TX5W@28211|Alphaproteobacteria,3JUW5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2932347_18	316058.RPB_3500	5.815e-43	162.0	29ARX@1|root,2ZXRJ@2|Bacteria,1RFJ9@1224|Proteobacteria,2U8JG@28211|Alphaproteobacteria,3JYSX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2932347_1	1297865.APJD01000010_gene5056	1.69e-296	910.0	COG4249@1|root,COG4249@2|Bacteria,1R3WZ@1224|Proteobacteria,2TTKN@28211|Alphaproteobacteria,3JSCS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF4189,Peptidase_C14
SX3_k127_2932347_5	1297865.APJD01000010_gene5057	1.961e-231	719.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2TTMV@28211|Alphaproteobacteria,3JSN5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	alcohol dehydrogenase	MA20_28180	-	1.1.1.1	ko:K00001,ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_2932347_12	1297865.APJD01000010_gene5058	2.059e-178	559.0	COG0030@1|root,COG0030@2|Bacteria,1MVNU@1224|Proteobacteria,2TRD9@28211|Alphaproteobacteria,3JS7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	ksgA	GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.182	ko:K02528	-	-	R10716	RC00003,RC03257	ko00000,ko01000,ko03009	-	-	-	RrnaAD
SX3_k127_2932347_8	1297865.APJD01000010_gene5059	1.292e-204	638.0	COG1995@1|root,COG1995@2|Bacteria,1MX5W@1224|Proteobacteria,2TSKF@28211|Alphaproteobacteria,3JUN8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)	pdxA	-	1.1.1.262	ko:K00097	ko00750,ko01100,map00750,map01100	M00124	R05681,R05837,R07406	RC00089,RC00675,RC01475	ko00000,ko00001,ko00002,ko01000	-	-	-	PdxA
SX3_k127_2932347_13	1297865.APJD01000010_gene5060	6.12e-178	560.0	COG0760@1|root,COG0760@2|Bacteria,1MVB3@1224|Proteobacteria,2TSJ3@28211|Alphaproteobacteria,3JRHX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	SurA N-terminal domain	surA	-	5.2.1.8	ko:K03771	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase,SurA_N,SurA_N_3
SX3_k127_2932347_0	1297865.APJD01000010_gene5061	0.0	1646.0	COG1452@1|root,COG1452@2|Bacteria,1MUJC@1224|Proteobacteria,2TR3B@28211|Alphaproteobacteria,3JR89@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane	lptD	-	-	ko:K04744	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	OstA,OstA_C
SX3_k127_2932347_7	1297865.APJD01000010_gene5062	1.442e-224	698.0	COG0795@1|root,COG0795@2|Bacteria,1MVW3@1224|Proteobacteria,2TR76@28211|Alphaproteobacteria,3JRHK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Permease	lptG	-	-	ko:K11720	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko02000	1.B.42.1	-	-	YjgP_YjgQ
SX3_k127_2932347_4	1297865.APJD01000010_gene5063	4.912e-246	761.0	COG0795@1|root,COG0795@2|Bacteria,1MUF2@1224|Proteobacteria,2TQUB@28211|Alphaproteobacteria,3JSK7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Permease	MA20_28210	-	-	ko:K07091	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko02000	1.B.42.1	-	-	YjgP_YjgQ
SX3_k127_2933476_18	224911.27348412	6.805e-07	52.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2933476_11	1297865.APJD01000036_gene1418	5.78e-126	406.0	2F4UF@1|root,33XGS@2|Bacteria,1R4VV@1224|Proteobacteria,2TSHV@28211|Alphaproteobacteria,3JVGK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_2933476_1	1297865.APJD01000036_gene1417	0.0	1414.0	COG3511@1|root,COG3511@2|Bacteria,1MVNS@1224|Proteobacteria,2U1QU@28211|Alphaproteobacteria,3JW8V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Phosphoesterase family	-	-	-	-	-	-	-	-	-	-	-	-	Phosphoesterase
SX3_k127_2933476_4	1297865.APJD01000036_gene1416	6.191e-301	929.0	COG1858@1|root,COG1858@2|Bacteria,1R7H4@1224|Proteobacteria,2VF1I@28211|Alphaproteobacteria,3JW4X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Di-haem cytochrome c peroxidase	-	-	-	-	-	-	-	-	-	-	-	-	CCP_MauG
SX3_k127_2933476_8	1297865.APJD01000036_gene1415	2.435e-163	515.0	COG2822@1|root,COG2822@2|Bacteria,1MWFR@1224|Proteobacteria,2U0CI@28211|Alphaproteobacteria,3JUXF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Imelysin	-	-	-	ko:K07224	-	-	-	-	ko00000,ko02000	2.A.108.2.3	-	-	Peptidase_M75
SX3_k127_2933476_17	398525.KB900701_gene635	2.571e-12	70.0	COG1989@1|root,COG1989@2|Bacteria,1PNQR@1224|Proteobacteria,2UBNI@28211|Alphaproteobacteria,3JYIT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NOU	Type IV leader peptidase family	-	-	3.4.23.43	ko:K02654	-	M00331	-	-	ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15.2	-	-	Peptidase_A24
SX3_k127_2933476_10	1297865.APJD01000036_gene1414	1.171e-128	424.0	2E9H8@1|root,333QC@2|Bacteria,1QQ46@1224|Proteobacteria,2TU89@28211|Alphaproteobacteria,3JSH7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	ko:K02463	ko05111,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	-
SX3_k127_2933476_13	1297865.APJD01000036_gene1413	1.259e-106	347.0	2DTTW@1|root,32UVX@2|Bacteria,1R7IH@1224|Proteobacteria,2TQUA@28211|Alphaproteobacteria,3JXDE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Type II secretion system (T2SS), protein M subtype b	-	-	-	ko:K02462	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSM_b
SX3_k127_2933476_6	1297865.APJD01000036_gene1412	7.077e-224	696.0	COG3166@1|root,COG3166@2|Bacteria,1RJTG@1224|Proteobacteria,2TUXN@28211|Alphaproteobacteria,3JW8G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02461	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	PilN
SX3_k127_2933476_7	1297865.APJD01000036_gene1411	2.828e-186	589.0	COG3156@1|root,COG3156@2|Bacteria,1RJRE@1224|Proteobacteria,2TUMU@28211|Alphaproteobacteria,3JS8P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02460	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSK
SX3_k127_2933476_9	1297865.APJD01000036_gene1410	3.733e-146	466.0	COG4967@1|root,COG4967@2|Bacteria,1Q12T@1224|Proteobacteria,2U0HI@28211|Alphaproteobacteria,3JVK6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02459	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl
SX3_k127_2933476_16	1230476.C207_05064	5.274e-65	225.0	COG4967@1|root,COG4967@2|Bacteria,1N7XY@1224|Proteobacteria,2UGHB@28211|Alphaproteobacteria,3JZ0J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	type IV pilus modification protein PilV	-	-	-	ko:K02458	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl
SX3_k127_2933476_15	1297865.APJD01000036_gene1408	3.026e-88	292.0	COG4970@1|root,COG4970@2|Bacteria,1RBW1@1224|Proteobacteria,2U6X0@28211|Alphaproteobacteria,3JY0W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02457	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl
SX3_k127_2933476_14	1230476.C207_05062	4.086e-93	308.0	COG2165@1|root,COG2165@2|Bacteria,1RDX2@1224|Proteobacteria,2U7GY@28211|Alphaproteobacteria,3JYH8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	general secretion pathway protein G	gspG	-	-	ko:K02456	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	N_methyl,T2SSG
SX3_k127_2933476_5	1297865.APJD01000036_gene1406	1.365e-246	764.0	COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,2TV76@28211|Alphaproteobacteria,3JVGQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	General secretion pathway protein F	gspF	-	-	ko:K02455,ko:K02653	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.15,3.A.15.2	-	-	T2SSF
SX3_k127_2933476_3	1297865.APJD01000036_gene1405	0.0	1074.0	COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,2TRMU@28211|Alphaproteobacteria,3JV8C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	General secretion pathway protein E (Type II traffic warden ATPase)	gspE	-	-	ko:K02454	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSE,T2SSE_N
SX3_k127_2933476_2	1230476.C207_05059	0.0	1414.0	COG1450@1|root,COG1450@2|Bacteria,1MUUA@1224|Proteobacteria,2TT8A@28211|Alphaproteobacteria,3JRKS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	general secretion pathway protein D	gspD	-	-	ko:K02453	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	Secretin,Secretin_N
SX3_k127_2933476_12	1297865.APJD01000036_gene1403	1.313e-109	357.0	COG0790@1|root,COG0790@2|Bacteria,1RAX3@1224|Proteobacteria,2UE4B@28211|Alphaproteobacteria,3JY7R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sel1-like repeats.	-	-	-	-	-	-	-	-	-	-	-	-	Sel1
SX3_k127_2933476_0	1297865.APJD01000036_gene1402	0.0	2741.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,3JS9Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	haemagglutination activity domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF3739,Glug,Haemagg_act
SX3_k127_2939242_0	1297865.APJD01000005_gene3641	0.0	2275.0	COG1305@1|root,COG4196@1|root,COG1305@2|Bacteria,COG4196@2|Bacteria,1MVAG@1224|Proteobacteria,2TSVH@28211|Alphaproteobacteria,3JRWJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Putative amidoligase enzyme (DUF2126)	MA20_16195	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,DUF2126,Transglut_core
SX3_k127_2939242_1	1297865.APJD01000005_gene3642	0.0	1641.0	COG2307@1|root,COG2308@1|root,COG2307@2|Bacteria,COG2308@2|Bacteria,1MX5P@1224|Proteobacteria,2TRJE@28211|Alphaproteobacteria,3JTPZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Circularly permuted ATP-grasp type 2	MA20_16190	-	-	-	-	-	-	-	-	-	-	-	Alpha-E,CP_ATPgrasp_2
SX3_k127_2939242_5	1297865.APJD01000005_gene3643	2.674e-185	587.0	COG1305@1|root,COG1305@2|Bacteria,1MVMI@1224|Proteobacteria,2TRFC@28211|Alphaproteobacteria,3JUN6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Transglutaminase/protease-like homologues	-	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
SX3_k127_2939242_4	1297865.APJD01000005_gene3644	1.812e-297	916.0	COG2199@1|root,COG3706@2|Bacteria,1MWHH@1224|Proteobacteria,2TSEP@28211|Alphaproteobacteria,3JV3W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Cache domain	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF,dCache_1
SX3_k127_2939242_2	1297865.APJD01000005_gene3645	0.0	1001.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JTBE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	MA20_16110	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	4HB_MCP_1,HAMP,MCPsignal,sCache_2
SX3_k127_2939242_3	1297865.APJD01000005_gene3646	8.619e-301	923.0	COG4303@1|root,COG4303@2|Bacteria,1MUR4@1224|Proteobacteria,2TTNA@28211|Alphaproteobacteria,3JSC5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Ethanolamine ammonia lyase large subunit (EutB)	MA20_16105	-	4.3.1.7	ko:K03735	ko00564,ko01100,map00564,map01100	-	R00749	RC00370	ko00000,ko00001,ko01000	-	-	-	EutB
SX3_k127_2939242_6	1230476.C207_05596	3.207e-35	136.0	COG1032@1|root,COG1032@2|Bacteria,1MY2Y@1224|Proteobacteria,2TUIT@28211|Alphaproteobacteria,3JUXS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Domain of unknown function (DUF4070)	MA20_16100	-	-	-	-	-	-	-	-	-	-	-	B12-binding,DUF4070,Radical_SAM
SX3_k127_297436_3	883078.HMPREF9695_00761	2.839e-162	513.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,3JSZE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	-	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_297436_0	1297865.APJD01000052_gene1205	4.566e-285	880.0	COG0624@1|root,COG0624@2|Bacteria,1MW2W@1224|Proteobacteria,2TQYZ@28211|Alphaproteobacteria,3K2BI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M20/M25/M40	-	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_297436_1	1297865.APJD01000052_gene1206	2.635e-208	651.0	COG2141@1|root,COG2141@2|Bacteria,1MWDV@1224|Proteobacteria,2TV51@28211|Alphaproteobacteria,3JWDH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_297436_5	1120956.JHZK01000012_gene3642	3.977e-112	367.0	COG2057@1|root,COG2057@2|Bacteria,1MY3S@1224|Proteobacteria,2TUZ8@28211|Alphaproteobacteria,1JQ7Z@119043|Rhodobiaceae	28211|Alphaproteobacteria	I	Coenzyme A transferase	-	-	2.8.3.12	ko:K01040	ko00643,ko00650,ko01120,map00643,map00650,map01120	-	R04000,R05509	RC00012,RC00131,RC00137	ko00000,ko00001,ko01000	-	-	-	CoA_trans
SX3_k127_297436_2	1297865.APJD01000052_gene1208	1.263e-187	589.0	COG1788@1|root,COG1788@2|Bacteria,1NGS5@1224|Proteobacteria,2TVMU@28211|Alphaproteobacteria,3JRR4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Coenzyme A transferase	-	-	2.8.3.12	ko:K01039	ko00643,ko00650,ko01120,map00643,map00650,map01120	-	R04000,R05509	RC00012,RC00131,RC00137	ko00000,ko00001,ko01000	-	-	-	CoA_trans
SX3_k127_297436_7	2850.Phatr37952	0.0002546	52.0	COG2421@1|root,2SKIA@2759|Eukaryota	2850.Phatr37952|-	C	Acetamidase/Formamidase family	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_297436_6	1297865.APJD01000052_gene1209	2.897e-78	272.0	COG2421@1|root,COG2421@2|Bacteria,1MXKY@1224|Proteobacteria,2TSVA@28211|Alphaproteobacteria,3JW8A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Acetamidase/Formamidase family	-	-	-	-	-	-	-	-	-	-	-	-	FmdA_AmdA
SX3_k127_297436_4	1297865.APJD01000052_gene1210	2.165e-154	489.0	COG1638@1|root,COG1638@2|Bacteria,1MVYB@1224|Proteobacteria,2TT88@28211|Alphaproteobacteria,3JVXZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	-	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_3000483_2	1297865.APJD01000014_gene787	9.522e-119	382.0	COG2198@1|root,COG2198@2|Bacteria,1NENQ@1224|Proteobacteria,2TSW1@28211|Alphaproteobacteria,3JQP2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine Phosphotransfer domain	MA20_31460	-	-	-	-	-	-	-	-	-	-	-	Hpt
SX3_k127_3000483_3	398525.KB900701_gene5821	4.611e-117	377.0	COG0784@1|root,COG0784@2|Bacteria,1N0NS@1224|Proteobacteria,2TV2S@28211|Alphaproteobacteria,3JRMA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	MA20_31455	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_3000483_1	1297865.APJD01000014_gene785	1.187e-161	509.0	COG0061@1|root,COG0061@2|Bacteria,1MUBC@1224|Proteobacteria,2TSKN@28211|Alphaproteobacteria,3JUS0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP	nadK	-	2.7.1.23	ko:K00858	ko00760,ko01100,map00760,map01100	-	R00104	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	NAD_kinase
SX3_k127_3000483_0	1297865.APJD01000014_gene784	0.0	1029.0	COG2939@1|root,COG2939@2|Bacteria,1MW05@1224|Proteobacteria,2TS7R@28211|Alphaproteobacteria,3JSXH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Serine carboxypeptidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S10
SX3_k127_3009166_4	1297865.APJD01000008_gene5582	1.796e-106	346.0	COG4923@1|root,COG4923@2|Bacteria,1MY1R@1224|Proteobacteria,2U4CU@28211|Alphaproteobacteria,3JRED@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF429)	-	-	-	-	-	-	-	-	-	-	-	-	DUF429
SX3_k127_3009166_0	1297865.APJD01000008_gene5583	0.0	1123.0	COG1838@1|root,COG1951@1|root,COG1838@2|Bacteria,COG1951@2|Bacteria,1MUV9@1224|Proteobacteria,2TT46@28211|Alphaproteobacteria,3JTYW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Catalyzes the reversible hydration of fumarate to (S)- malate	fumA	GO:0003674,GO:0003824,GO:0004333,GO:0005488,GO:0005515,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016860,GO:0016862,GO:0016999,GO:0017144,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0048037,GO:0050163,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0072350	4.2.1.2	ko:K01676	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374	R01082	RC00443	ko00000,ko00001,ko00002,ko01000	-	-	-	Fumerase,Fumerase_C
SX3_k127_3009166_10	1230476.C207_00741	3.707e-54	194.0	2DQ41@1|root,334MP@2|Bacteria,1QWJG@1224|Proteobacteria,2UFKB@28211|Alphaproteobacteria,3JZRC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Kazal type serine protease inhibitors	-	-	-	-	-	-	-	-	-	-	-	-	Kazal_1
SX3_k127_3009166_6	1230476.C207_00742	6.668e-92	304.0	2A99X@1|root,30YET@2|Bacteria,1RIIA@1224|Proteobacteria,2U3TD@28211|Alphaproteobacteria,3JWJN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_08600	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3009166_5	1297865.APJD01000008_gene5585	1.339e-99	324.0	COG3832@1|root,COG3832@2|Bacteria,1RC0V@1224|Proteobacteria,2TS70@28211|Alphaproteobacteria,3JYCH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_3009166_9	1297865.APJD01000008_gene5586	7.202e-62	216.0	COG0640@1|root,COG0640@2|Bacteria,1RHUX@1224|Proteobacteria,2U9YE@28211|Alphaproteobacteria,3JYYJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	MA20_09440	-	-	ko:K03892	-	-	-	-	ko00000,ko03000	-	-	-	HTH_20
SX3_k127_3009166_3	1297865.APJD01000008_gene5587	3.027e-142	454.0	COG2020@1|root,COG2020@2|Bacteria,1RDC4@1224|Proteobacteria,2TUXA@28211|Alphaproteobacteria,3JU1Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Isoprenylcysteine carboxyl methyltransferase (ICMT) family	-	-	-	-	-	-	-	-	-	-	-	-	PEMT
SX3_k127_3009166_7	1297865.APJD01000008_gene5588	4.772e-78	260.0	COG3791@1|root,COG3791@2|Bacteria,1RHWZ@1224|Proteobacteria,2UBRG@28211|Alphaproteobacteria,3JYQ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
SX3_k127_3009166_1	1297865.APJD01000008_gene5589	2.211e-153	485.0	COG0625@1|root,COG0625@2|Bacteria,1N8XH@1224|Proteobacteria,2TTHQ@28211|Alphaproteobacteria,3JSV2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase	MA20_08585	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_3
SX3_k127_3009166_8	1297865.APJD01000008_gene5590	3.106e-73	248.0	2EHXM@1|root,33BP4@2|Bacteria,1NGZB@1224|Proteobacteria,2U854@28211|Alphaproteobacteria,3JZCJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3606)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3606
SX3_k127_3009166_2	1297865.APJD01000008_gene5591	3.877e-144	458.0	28NKC@1|root,2ZBM7@2|Bacteria,1MWMY@1224|Proteobacteria,2TU05@28211|Alphaproteobacteria,3JS0Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_08580	-	-	-	-	-	-	-	-	-	-	-	Endostatin
SX3_k127_3009166_12	172088.AUGA01000067_gene6883	1.425e-05	47.0	COG2267@1|root,COG2267@2|Bacteria,1RCQT@1224|Proteobacteria,2U67H@28211|Alphaproteobacteria,3JYA0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_3009166_11	1297865.APJD01000008_gene5592	8.739e-34	129.0	COG4395@1|root,COG4395@2|Bacteria,1NSUG@1224|Proteobacteria,2U0SF@28211|Alphaproteobacteria,3JR8D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tim44	MA20_08550	-	-	-	-	-	-	-	-	-	-	-	Tim44
SX3_k127_3012740_3	1297865.APJD01000001_gene5951	1.269e-84	286.0	COG0719@1|root,COG0719@2|Bacteria,1MVK0@1224|Proteobacteria,2TTK9@28211|Alphaproteobacteria,3JSQ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Uncharacterized protein family (UPF0051)	sufD	-	-	ko:K09015	-	-	-	-	ko00000	-	-	-	UPF0051
SX3_k127_3012740_1	1230476.C207_01354	3.036e-154	488.0	COG0396@1|root,COG0396@2|Bacteria,1MUGK@1224|Proteobacteria,2TS8T@28211|Alphaproteobacteria,3JTK7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATPases associated with a variety of cellular activities	sufC	-	-	ko:K09013	-	-	-	-	ko00000,ko02000	-	-	-	ABC_tran
SX3_k127_3012740_0	1297865.APJD01000001_gene5953	0.0	1011.0	COG0719@1|root,COG0719@2|Bacteria,1MVKY@1224|Proteobacteria,2TRU6@28211|Alphaproteobacteria,3JQSA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Uncharacterized protein family (UPF0051)	sufB	-	-	ko:K09014	-	-	-	-	ko00000	-	-	-	UPF0051
SX3_k127_3012740_2	1297865.APJD01000001_gene5954	4.266e-113	365.0	COG1104@1|root,COG1104@2|Bacteria,1MU1C@1224|Proteobacteria,2TSQE@28211|Alphaproteobacteria,3JRD9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-V	nifS	GO:0000096,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006464,GO:0006520,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016043,GO:0016226,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0018282,GO:0018283,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0031071,GO:0031163,GO:0031974,GO:0031981,GO:0032324,GO:0034641,GO:0036211,GO:0042278,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043545,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0046983,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657	2.8.1.7	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	-	R07460,R11528,R11529	RC01789,RC02313	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	-	-	-	Aminotran_5
SX3_k127_3028980_14	1297865.APJD01000071_gene1236	2.228e-13	69.0	COG5443@1|root,COG5443@2|Bacteria,1RD3V@1224|Proteobacteria,2U7PK@28211|Alphaproteobacteria,3JWU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellar protein FlbT	flbT	-	-	ko:K06601	-	-	-	-	ko00000,ko02035	-	-	-	FlbT
SX3_k127_3028980_1	1297865.APJD01000071_gene1237	0.0	1134.0	COG1344@1|root,COG1749@1|root,COG1344@2|Bacteria,COG1749@2|Bacteria,1PDE9@1224|Proteobacteria,2TRKN@28211|Alphaproteobacteria,3JT0D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	-	-	-	-	-	-	-	-	-	-	-	-	Flagellin_C,Flagellin_N
SX3_k127_3028980_0	1297865.APJD01000071_gene1238	0.0	1150.0	COG1256@1|root,COG1256@2|Bacteria,1MV2M@1224|Proteobacteria,2TV1B@28211|Alphaproteobacteria,3JRSV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Belongs to the flagella basal body rod proteins family	flgK	-	-	ko:K02396	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flg_bb_rod,Flg_bbr_C
SX3_k127_3028980_2	398525.KB900701_gene6191	0.0	1094.0	COG1749@1|root,COG1749@2|Bacteria,1MU5J@1224|Proteobacteria,2TSF2@28211|Alphaproteobacteria,3JR44@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	flagellar basal body	flgE	-	-	ko:K02390	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlaE,Flg_bb_rod,Flg_bbr_C
SX3_k127_3028980_8	1297865.APJD01000034_gene2385	1.839e-109	353.0	COG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,2U70T@28211|Alphaproteobacteria,3JSXE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	methionine sulfoxide reductase	msrB1	-	1.8.4.12	ko:K07305	-	-	-	-	ko00000,ko01000	-	-	-	SelR
SX3_k127_3028980_3	1297865.APJD01000034_gene2384	1.57e-319	979.0	COG0665@1|root,COG0665@2|Bacteria,1MVGP@1224|Proteobacteria,2TRX9@28211|Alphaproteobacteria,3JSHC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	MA20_08305	-	-	ko:K04755,ko:K09471	ko00330,ko01100,map00330,map01100	M00136	R07415	RC00062	ko00000,ko00001,ko00002,ko01000	-	-	-	DAO
SX3_k127_3028980_7	1297865.APJD01000034_gene2383	2.741e-115	372.0	COG2062@1|root,COG2062@2|Bacteria,1N0FX@1224|Proteobacteria,2UBYD@28211|Alphaproteobacteria,3JSQ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine phosphatase superfamily (branch 1)	sixA	-	-	ko:K08296	-	-	-	-	ko00000,ko01000	-	-	-	His_Phos_1
SX3_k127_3028980_9	1297865.APJD01000034_gene2382	3.408e-82	277.0	COG0589@1|root,COG0589@2|Bacteria,1RI97@1224|Proteobacteria,2UABJ@28211|Alphaproteobacteria,3JY3J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Belongs to the universal stress protein A family	MA20_08295	-	-	-	-	-	-	-	-	-	-	-	Usp
SX3_k127_3028980_12	1230476.C207_00808	5.425e-33	129.0	COG5457@1|root,COG5457@2|Bacteria,1N1MN@1224|Proteobacteria,2UC2B@28211|Alphaproteobacteria,3K02E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1127)	MA20_08290	-	-	-	-	-	-	-	-	-	-	-	DUF1127
SX3_k127_3028980_4	1297865.APJD01000034_gene2380	3.19e-286	880.0	COG1167@1|root,COG1167@2|Bacteria,1MUJE@1224|Proteobacteria,2TQZZ@28211|Alphaproteobacteria,3JW05@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix gluconate operon transcriptional repressor	MA20_08285	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2,GntR
SX3_k127_3028980_13	1297865.APJD01000034_gene2379	7.292e-17	83.0	2APMN@1|root,31ER2@2|Bacteria,1P6FG@1224|Proteobacteria,2UZ27@28211|Alphaproteobacteria,3K5CM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3028980_10	1297865.APJD01000034_gene2378	3.042e-76	255.0	29F83@1|root,311Q3@2|Bacteria,1N25T@1224|Proteobacteria,2UDDC@28211|Alphaproteobacteria,3K0SF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3028980_6	1297865.APJD01000034_gene2377	7.853e-125	401.0	COG1434@1|root,COG1434@2|Bacteria,1MVY4@1224|Proteobacteria,2U1ZK@28211|Alphaproteobacteria,3JTMX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DUF218 domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF218
SX3_k127_3028980_5	1297865.APJD01000034_gene2376	3.451e-125	403.0	2DZ9M@1|root,32V6Z@2|Bacteria,1R7AU@1224|Proteobacteria,2TUDM@28211|Alphaproteobacteria,3JW9C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3028980_11	1297865.APJD01000034_gene2375	1.252e-35	142.0	2A6R0@1|root,30VJ3@2|Bacteria,1RA61@1224|Proteobacteria,2U5QX@28211|Alphaproteobacteria,3JY2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_08270	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3038853_2	1297865.APJD01000009_gene2911	4.101e-249	771.0	COG1835@1|root,COG1835@2|Bacteria,1R8NZ@1224|Proteobacteria,2VF3I@28211|Alphaproteobacteria,3JTFB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_3038853_4	172088.AUGA01000005_gene7825	2.797e-82	285.0	COG1359@1|root,COG1359@2|Bacteria,1RGK4@1224|Proteobacteria,2U81Q@28211|Alphaproteobacteria,3JZQ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_3038853_3	1297865.APJD01000009_gene2909	2.04e-145	461.0	COG0640@1|root,COG0640@2|Bacteria,1MWCW@1224|Proteobacteria,2TTA5@28211|Alphaproteobacteria,3JRUF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
SX3_k127_3038853_1	1297865.APJD01000009_gene2908	1.932e-255	794.0	COG0277@1|root,COG0277@2|Bacteria,1MVYV@1224|Proteobacteria,2TRA7@28211|Alphaproteobacteria,3JVXW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD binding domain	glcE	-	-	ko:K11472	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001	-	-	-	FAD-oxidase_C,FAD_binding_4
SX3_k127_3038853_0	1297865.APJD01000009_gene2907	8.697e-291	892.0	COG0247@1|root,COG0247@2|Bacteria,1MWTK@1224|Proteobacteria,2TR9H@28211|Alphaproteobacteria,3JSJD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cysteine-rich domain	glcF	-	-	ko:K11473	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001	-	-	-	CCG,Fer4_7
SX3_k127_3066344_1	1297865.APJD01000036_gene1493	9.883e-270	830.0	COG5310@1|root,COG5310@2|Bacteria,1MUZB@1224|Proteobacteria,2TRTR@28211|Alphaproteobacteria,3JS29@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Saccharopine dehydrogenase C-terminal domain	hss	-	2.5.1.44	ko:K00808	ko00960,ko01110,map00960,map01110	-	R00018	RC00053	ko00000,ko00001,ko01000	-	-	-	Sacchrp_dh_C,Sacchrp_dh_NADP
SX3_k127_3066344_12	1297865.APJD01000036_gene1494	6.048e-78	262.0	COG0251@1|root,COG0251@2|Bacteria,1RH61@1224|Proteobacteria,2UAE3@28211|Alphaproteobacteria,3JY1G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	MA20_06535	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
SX3_k127_3066344_15	1297865.APJD01000036_gene1495	4.325e-28	115.0	2AHGS@1|root,302IB@2|Bacteria,1NDA1@1224|Proteobacteria,2UJ1C@28211|Alphaproteobacteria,3K1AI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3066344_8	1297865.APJD01000036_gene1496	1.132e-122	394.0	COG3153@1|root,COG3153@2|Bacteria,1RD0C@1224|Proteobacteria,2U7AS@28211|Alphaproteobacteria,3JY5B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Acetyltransferase (GNAT) domain	MA20_06530	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_9
SX3_k127_3066344_2	1297865.APJD01000036_gene1497	1.737e-252	781.0	COG0019@1|root,COG0019@2|Bacteria,1MZ7Y@1224|Proteobacteria,2TSKB@28211|Alphaproteobacteria,3JRBN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the Orn Lys Arg decarboxylase class-II family	speF	-	4.1.1.17	ko:K01581	ko00330,ko00480,ko01100,ko01110,ko01130,map00330,map00480,map01100,map01110,map01130	M00134	R00670	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	Orn_Arg_deC_N,Orn_DAP_Arg_deC
SX3_k127_3066344_14	1297865.APJD01000036_gene1498	1.307e-44	169.0	2EMGS@1|root,33F5F@2|Bacteria,1N1UH@1224|Proteobacteria,2UC3W@28211|Alphaproteobacteria,3K03S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_06520	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3066344_0	1297865.APJD01000036_gene1499	0.0	1409.0	COG0339@1|root,COG0339@2|Bacteria,1MU1K@1224|Proteobacteria,2TRCK@28211|Alphaproteobacteria,3JSDU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M3	dcp	GO:0003674,GO:0003824,GO:0004180,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0016787,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564	3.4.15.5	ko:K01284	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M3
SX3_k127_3066344_7	1297865.APJD01000036_gene1500	4.192e-139	444.0	COG3683@1|root,COG3683@2|Bacteria,1R4QA@1224|Proteobacteria,2VGNV@28211|Alphaproteobacteria,3JTXM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1007)	MA20_06510	-	-	-	-	-	-	-	-	-	-	-	DUF1007
SX3_k127_3066344_4	1297865.APJD01000036_gene1501	8.331e-223	700.0	COG2215@1|root,COG2215@2|Bacteria,1MWIW@1224|Proteobacteria,2TSIM@28211|Alphaproteobacteria,3JU9V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the NiCoT transporter (TC 2.A.52) family	-	-	-	ko:K08970	-	-	-	-	ko00000,ko02000	2.A.52.2	-	-	NicO
SX3_k127_3066344_11	1297865.APJD01000036_gene1502	4.379e-80	267.0	COG3686@1|root,COG3686@2|Bacteria,1N8EA@1224|Proteobacteria,2UG4X@28211|Alphaproteobacteria,3JYE9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MAPEG family	-	-	-	-	-	-	-	-	-	-	-	-	MAPEG
SX3_k127_3066344_3	1297865.APJD01000036_gene1503	1.291e-228	709.0	COG0276@1|root,COG0276@2|Bacteria,1MVR1@1224|Proteobacteria,2TSMS@28211|Alphaproteobacteria,3JRNW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the ferrous insertion into protoporphyrin IX	hemH	GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.99.1.1,4.99.1.9	ko:K01772	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R00310,R11329	RC01012	ko00000,ko00001,ko00002,ko01000	-	-	-	Ferrochelatase
SX3_k127_3066344_5	1297865.APJD01000036_gene1504	2.041e-201	630.0	COG0330@1|root,COG0330@2|Bacteria,1MUM8@1224|Proteobacteria,2TRUY@28211|Alphaproteobacteria,3JSWN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	prohibitin homologues	qmcA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	Band_7,Band_7_C
SX3_k127_3066344_10	1297865.APJD01000036_gene1505	4.776e-89	294.0	COG1585@1|root,COG1585@2|Bacteria,1N241@1224|Proteobacteria,2UC8X@28211|Alphaproteobacteria,3JY4I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OU	NfeD-like C-terminal, partner-binding	MA20_06475	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K07340	-	-	-	-	ko00000	-	-	-	NfeD
SX3_k127_3066344_13	398525.KB900701_gene2529	2.002e-58	207.0	COG1733@1|root,COG1733@2|Bacteria,1N0WG@1224|Proteobacteria,2U9MA@28211|Alphaproteobacteria,3K082@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_3066344_9	1297865.APJD01000036_gene1507	4.833e-114	368.0	COG2128@1|root,COG2128@2|Bacteria,1MWWX@1224|Proteobacteria,2TQPH@28211|Alphaproteobacteria,3JRFX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carboxymuconolactone decarboxylase family	-	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_3066344_6	1297865.APJD01000036_gene1508	1.084e-182	572.0	COG0517@1|root,COG0794@1|root,COG0517@2|Bacteria,COG0794@2|Bacteria,1MUXD@1224|Proteobacteria,2TU5X@28211|Alphaproteobacteria,3JR9G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the SIS family. GutQ KpsF subfamily	kdsD	-	5.3.1.13	ko:K06041	ko00540,ko01100,map00540,map01100	M00063	R01530	RC00541	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	CBS,SIS
SX3_k127_3069315_13	1297865.APJD01000036_gene1419	4.736e-177	559.0	COG1566@1|root,COG1566@2|Bacteria,1MWG0@1224|Proteobacteria,2TRI4@28211|Alphaproteobacteria,3JUYY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl_2,HlyD_3
SX3_k127_3069315_18	1297865.APJD01000036_gene1420	8.188e-35	135.0	2EGFD@1|root,33A7D@2|Bacteria,1NH03@1224|Proteobacteria,2UJKA@28211|Alphaproteobacteria,3K19B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1656)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1656
SX3_k127_3069315_0	1297865.APJD01000036_gene1421	0.0	1286.0	COG1289@1|root,COG1289@2|Bacteria,1MX9H@1224|Proteobacteria,2TV5R@28211|Alphaproteobacteria,3JTZM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Fusaric acid resistance	-	-	-	-	-	-	-	-	-	-	-	-	FUSC
SX3_k127_3069315_17	1297865.APJD01000036_gene1422	3.303e-94	310.0	COG1846@1|root,COG1846@2|Bacteria,1N78T@1224|Proteobacteria,2UFV6@28211|Alphaproteobacteria,3JY4K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	ko:K06075	-	-	-	-	ko00000,ko03000	-	-	-	HTH_27,MarR,MarR_2
SX3_k127_3069315_7	1297865.APJD01000036_gene1423	1.343e-250	775.0	COG0477@1|root,COG2814@2|Bacteria,1MVSH@1224|Proteobacteria,2TUEW@28211|Alphaproteobacteria,3JTAS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,MFS_1_like,MFS_2,Sugar_tr
SX3_k127_3069315_6	1297865.APJD01000036_gene1424	1.349e-263	814.0	2E29A@1|root,32XEZ@2|Bacteria,1RDST@1224|Proteobacteria,2U86I@28211|Alphaproteobacteria,3K1D8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3069315_5	1297865.APJD01000036_gene1426	0.0	1029.0	COG3203@1|root,COG3203@2|Bacteria,1MXN6@1224|Proteobacteria,2TSH7@28211|Alphaproteobacteria,3JQSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	ropAch1	-	-	-	-	-	-	-	-	-	-	-	Porin_2
SX3_k127_3069315_19	1320556.AVBP01000016_gene2767	1.218e-20	99.0	COG1846@1|root,COG1846@2|Bacteria,1MZE9@1224|Proteobacteria,2TSUB@28211|Alphaproteobacteria,43K5D@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	COG1846 Transcriptional regulators	MA20_38125	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_3069315_16	1040989.AWZU01000001_gene5535	9.518e-126	402.0	COG1403@1|root,COG1403@2|Bacteria,1MWEQ@1224|Proteobacteria,2TR3M@28211|Alphaproteobacteria,3JS4T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	HNH endonuclease	MA20_20605	-	-	-	-	-	-	-	-	-	-	-	HNH,HNH_5
SX3_k127_3069315_2	1297865.APJD01000036_gene1428	0.0	1105.0	COG0038@1|root,COG0517@1|root,COG0038@2|Bacteria,COG0517@2|Bacteria,1MV4K@1224|Proteobacteria,2TTBG@28211|Alphaproteobacteria,3JQKU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Voltage gated chloride channel	-	-	-	ko:K03281	-	-	-	-	ko00000	2.A.49	-	-	CBS,Voltage_CLC
SX3_k127_3069315_9	1297865.APJD01000036_gene1429	1.081e-227	705.0	COG3391@1|root,COG3391@2|Bacteria,1NT97@1224|Proteobacteria,2TWGD@28211|Alphaproteobacteria,3JQU4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NHL repeat	MA20_20600	-	-	-	-	-	-	-	-	-	-	-	NHL
SX3_k127_3069315_22	224911.27354970	0.0005894	52.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_3069315_1	1297865.APJD01000036_gene1430	0.0	1226.0	COG2072@1|root,COG2072@2|Bacteria,1MWPJ@1224|Proteobacteria,2TT05@28211|Alphaproteobacteria,3JS8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	-	-	-	-	-	-	-	-	-	-	-	-	Pyr_redox_3
SX3_k127_3069315_8	1297865.APJD01000036_gene1431	1.827e-243	752.0	COG2130@1|root,COG2130@2|Bacteria,1MUR0@1224|Proteobacteria,2U16B@28211|Alphaproteobacteria,3JSRG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2855)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2855
SX3_k127_3069315_3	1297865.APJD01000036_gene1432	0.0	1060.0	COG0318@1|root,COG0318@2|Bacteria,1MUIC@1224|Proteobacteria,2TRRZ@28211|Alphaproteobacteria,3JR73@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_3069315_10	1297865.APJD01000036_gene1433	2.038e-211	659.0	COG2070@1|root,COG2070@2|Bacteria,1MU0U@1224|Proteobacteria,2TS5U@28211|Alphaproteobacteria,3JUQ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	MA20_20575	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_3069315_11	1297865.APJD01000036_gene1434	7.648e-187	585.0	COG0583@1|root,COG0583@2|Bacteria,1MWVB@1224|Proteobacteria,2TTFG@28211|Alphaproteobacteria,3JUFU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3069315_21	1040989.AWZU01000015_gene2614	0.0003688	44.0	COG1287@1|root,COG1287@2|Bacteria,1N1IK@1224|Proteobacteria,2TUYH@28211|Alphaproteobacteria,3JSAB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	oligosaccharyl transferase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3069315_4	1297865.APJD01000036_gene1435	0.0	1058.0	COG5309@1|root,COG5309@2|Bacteria,1MWJJ@1224|Proteobacteria,2U19Q@28211|Alphaproteobacteria,3JVH2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	beta (1-6) glucans synthase	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_17
SX3_k127_3069315_14	1297865.APJD01000036_gene1436	9.176e-138	443.0	COG0122@1|root,COG0122@2|Bacteria,1MX9C@1224|Proteobacteria,2TVJ7@28211|Alphaproteobacteria,3JU5E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	endonuclease III	alkA	-	3.2.2.21	ko:K01247	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HhH-GPD
SX3_k127_3069315_12	1297865.APJD01000036_gene1437	2.704e-183	574.0	COG3541@1|root,COG3541@2|Bacteria,1MYFT@1224|Proteobacteria,2U7ZX@28211|Alphaproteobacteria,3JX7G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted nucleotidyltransferase	-	-	-	ko:K07074	-	-	-	-	ko00000	-	-	-	Nuc-transf
SX3_k127_3069315_15	1297865.APJD01000036_gene1438	8.413e-131	419.0	COG0008@1|root,COG0008@2|Bacteria,1MUN7@1224|Proteobacteria,2TR2V@28211|Alphaproteobacteria,3JUNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the class-I aminoacyl-tRNA synthetase family	gluQ	-	-	ko:K01894	-	-	-	-	ko00000,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1c
SX3_k127_3093306_8	1297865.APJD01000024_gene404	5.191e-94	308.0	COG1846@1|root,COG1846@2|Bacteria,1PTFV@1224|Proteobacteria,2UBW4@28211|Alphaproteobacteria,3JYFG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	MarR family	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_3093306_4	1297865.APJD01000024_gene403	1.155e-255	788.0	COG1073@1|root,COG1073@2|Bacteria,1MXJ3@1224|Proteobacteria,2TVHP@28211|Alphaproteobacteria,3JQQG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	hydrolases or acyltransferases, alpha beta hydrolase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	DUF1100,Peptidase_S9
SX3_k127_3093306_10	1297865.APJD01000024_gene402	7.657e-79	264.0	2D78S@1|root,32TNJ@2|Bacteria,1N0VB@1224|Proteobacteria,2UCAT@28211|Alphaproteobacteria,3JYS9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4864)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4864
SX3_k127_3093306_0	1297865.APJD01000024_gene401	0.0	1040.0	COG0790@1|root,COG4249@1|root,COG0790@2|Bacteria,COG4249@2|Bacteria,1Q8Z3@1224|Proteobacteria,2V7DR@28211|Alphaproteobacteria,3K2ES@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
SX3_k127_3093306_14	1163409.UUA_05867	4.954e-10	60.0	COG4890@1|root,COG4890@2|Bacteria,1NGDQ@1224|Proteobacteria,1T97I@1236|Gammaproteobacteria,1XBSR@135614|Xanthomonadales	135614|Xanthomonadales	S	Membrane bound YbgT-like protein	-	-	-	-	-	-	-	-	-	-	-	-	YbgT_YccB
SX3_k127_3093306_5	1297865.APJD01000024_gene398	2.27e-238	739.0	COG1294@1|root,COG1294@2|Bacteria,1MURP@1224|Proteobacteria,2TU3I@28211|Alphaproteobacteria,3JXZB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome bd terminal oxidase subunit II	cydB	-	1.10.3.14	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00153	R11325	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	Cyt_bd_oxida_II
SX3_k127_3093306_1	1297865.APJD01000024_gene397	0.0	1025.0	COG1271@1|root,COG1271@2|Bacteria,1MV60@1224|Proteobacteria,2TQMA@28211|Alphaproteobacteria,3JXDA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome bd terminal oxidase subunit I	cydA	-	1.10.3.14	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00153	R11325	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	Cyt_bd_oxida_I
SX3_k127_3093306_9	1297865.APJD01000024_gene395	2.138e-88	293.0	2E8Z2@1|root,3338N@2|Bacteria,1N5F4@1224|Proteobacteria,2UDEV@28211|Alphaproteobacteria,3K01Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3093306_6	1297865.APJD01000024_gene394	3.194e-156	493.0	COG0664@1|root,COG0664@2|Bacteria,1MVGE@1224|Proteobacteria,2TV0E@28211|Alphaproteobacteria,3JUFD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DNA-binding transcription factor activity	fnrL	-	-	ko:K01420	-	-	-	-	ko00000,ko03000	-	-	-	Crp,HTH_Crp_2,cNMP_binding
SX3_k127_3093306_7	1297865.APJD01000024_gene392	5.497e-114	370.0	COG0662@1|root,COG1396@1|root,COG0662@2|Bacteria,COG1396@2|Bacteria,1RCYA@1224|Proteobacteria,2TU8R@28211|Alphaproteobacteria,3JS1A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix domain	MA20_09770	-	-	-	-	-	-	-	-	-	-	-	Cupin_2,HTH_3,HTH_31
SX3_k127_3093306_2	1297865.APJD01000024_gene391	5.452e-297	917.0	COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,2TQND@28211|Alphaproteobacteria,3JRVX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	MA20_09775	-	2.6.1.18	ko:K00822	ko00280,ko00410,ko00640,ko01100,map00280,map00410,map00640,map01100	-	R00907,R04187	RC00008,RC00062,RC00160	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_3
SX3_k127_3093306_3	1297865.APJD01000024_gene390	1.632e-281	865.0	COG0665@1|root,COG0665@2|Bacteria,1MVIZ@1224|Proteobacteria,2TRT9@28211|Alphaproteobacteria,3JV4Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Oxidative deamination of D-amino acids	dadA	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0008718,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016638,GO:0019478,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046144,GO:0046395,GO:0046416,GO:0046436,GO:0055114,GO:0055130,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	1.4.5.1	ko:K00285	ko00360,map00360	-	R01374,R09493	RC00006,RC00025	ko00000,ko00001,ko01000	-	-	-	DAO
SX3_k127_3099415_15	1230476.C207_05677	6.689e-61	215.0	COG3103@1|root,COG4991@2|Bacteria,1REMW@1224|Proteobacteria,2U824@28211|Alphaproteobacteria,3JZ0I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Protein of unknown function (DUF1236)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1236,Gly-zipper_Omp
SX3_k127_3099415_19	1297865.APJD01000006_gene4469	1.134e-21	95.0	2AEV9@1|root,314SS@2|Bacteria,1NAGH@1224|Proteobacteria,2UJB1@28211|Alphaproteobacteria,3K0X6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3096)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3096
SX3_k127_3099415_0	1297865.APJD01000006_gene4470	0.0	1894.0	COG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,1MU0R@1224|Proteobacteria,2TR3C@28211|Alphaproteobacteria,3JSHW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	pyruvate phosphate dikinase	ppdK	-	2.7.9.1	ko:K01006	ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200	M00169,M00171,M00172,M00173	R00206	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000	-	-	-	PEP-utilizers,PEP-utilizers_C,PPDK_N
SX3_k127_3099415_2	1297865.APJD01000006_gene4471	1.253e-308	947.0	COG3773@1|root,COG3773@2|Bacteria,1MWX3@1224|Proteobacteria,2TT15@28211|Alphaproteobacteria,3JT5Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Cell Wall Hydrolase	sleB	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_2
SX3_k127_3099415_4	1297865.APJD01000006_gene4472	3.282e-264	815.0	COG0477@1|root,COG2814@2|Bacteria,1MVHG@1224|Proteobacteria,2TRA4@28211|Alphaproteobacteria,3JSPN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_42180	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_3099415_5	1297865.APJD01000006_gene4473	2.572e-211	657.0	COG0604@1|root,COG0604@2|Bacteria,1MV3W@1224|Proteobacteria,2TRW7@28211|Alphaproteobacteria,3JQQ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	MA20_42175	-	-	ko:K19745	ko00640,ko01100,map00640,map01100	-	R00919	RC00095	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_3099415_11	1297865.APJD01000006_gene4474	1.507e-110	358.0	2F6Z6@1|root,33ZF5@2|Bacteria,1MV4Y@1224|Proteobacteria,2TT12@28211|Alphaproteobacteria,3JTHQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_42170	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3099415_17	1297865.APJD01000006_gene4475	3.835e-45	165.0	2AB78@1|root,310MM@2|Bacteria,1MZU7@1224|Proteobacteria,2UCNS@28211|Alphaproteobacteria,3K05P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3099415_1	1297865.APJD01000006_gene4476	0.0	1703.0	COG5373@1|root,COG5373@2|Bacteria,1N08V@1224|Proteobacteria,2TWNB@28211|Alphaproteobacteria,3JUIZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted membrane protein (DUF2339)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2339
SX3_k127_3099415_12	1297865.APJD01000006_gene4477	1.772e-103	337.0	COG5350@1|root,COG5350@2|Bacteria,1RDTX@1224|Proteobacteria,2U71X@28211|Alphaproteobacteria,3JV5K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	protein tyrosine phosphatase	MA20_42125	-	-	-	-	-	-	-	-	-	-	-	DSPc,Y_phosphatase
SX3_k127_3099415_10	1297865.APJD01000006_gene4478	4.303e-123	404.0	COG1896@1|root,COG1896@2|Bacteria,1RACF@1224|Proteobacteria,2TUK3@28211|Alphaproteobacteria,3JS9G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	MA20_42120	-	-	ko:K06952	-	-	-	-	ko00000	-	-	-	HD,HD_3
SX3_k127_3099415_9	1230476.C207_05666	9.19e-134	434.0	COG2818@1|root,COG2818@2|Bacteria,1R9X5@1224|Proteobacteria,2TUP5@28211|Alphaproteobacteria,3JR51@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	glycosylase i	tag	-	3.2.2.20	ko:K01246	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Adenine_glyco
SX3_k127_3099415_6	1297865.APJD01000006_gene4480	3.642e-182	572.0	COG0354@1|root,COG0354@2|Bacteria,1N852@1224|Proteobacteria,2TR8J@28211|Alphaproteobacteria,3JV0A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the GcvT family	ygfZ	-	-	ko:K06980	-	-	-	-	ko00000,ko03016	-	-	-	GCV_T,GCV_T_C
SX3_k127_3099415_3	1297865.APJD01000006_gene4481	3.584e-300	921.0	COG0044@1|root,COG0044@2|Bacteria,1MW10@1224|Proteobacteria,2TSQH@28211|Alphaproteobacteria,3JRZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Amidohydrolase family	pyrC1	-	3.5.2.3	ko:K01465	ko00240,ko01100,map00240,map01100	M00051	R01993	RC00632	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_1
SX3_k127_3099415_16	1297865.APJD01000006_gene4482	1.222e-49	178.0	2E7H7@1|root,331ZS@2|Bacteria,1NATZ@1224|Proteobacteria,2UG8B@28211|Alphaproteobacteria,3K03B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_42080	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3099415_8	1297865.APJD01000006_gene4483	1.23e-141	449.0	COG0546@1|root,COG0546@2|Bacteria,1REXF@1224|Proteobacteria,2VG24@28211|Alphaproteobacteria,3JSJQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HAD-hyrolase-like	MA20_36165	-	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	-	R01334	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD_2
SX3_k127_3099415_18	670307.HYPDE_28578	1.297e-24	110.0	COG5451@1|root,COG5451@2|Bacteria,1MYIV@1224|Proteobacteria,2UGCX@28211|Alphaproteobacteria,3N7DK@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2385)	MA20_42075	-	-	-	-	-	-	-	-	-	-	-	DUF2385
SX3_k127_3099415_14	1297865.APJD01000006_gene4485	1.053e-77	261.0	COG1051@1|root,COG1051@2|Bacteria,1N1KH@1224|Proteobacteria,2UDI2@28211|Alphaproteobacteria,3JYZ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the Nudix hydrolase family	MA20_42070	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_3099415_13	172088.AUGA01000004_gene4034	2.774e-95	313.0	2BNNA@1|root,32HB8@2|Bacteria,1R624@1224|Proteobacteria,2U216@28211|Alphaproteobacteria,3JYFR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_42065	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3099415_7	398525.KB900701_gene6756	1.734e-163	515.0	COG2135@1|root,COG2135@2|Bacteria,1RER4@1224|Proteobacteria,2U0W2@28211|Alphaproteobacteria,3JV7R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the SOS response-associated peptidase family	MA20_42060	-	-	-	-	-	-	-	-	-	-	-	SRAP
SX3_k127_3119925_0	398525.KB900701_gene3322	0.0	1263.0	COG1154@1|root,COG1154@2|Bacteria,1MUSJ@1224|Proteobacteria,2TRDD@28211|Alphaproteobacteria,3JSDV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)	dxs	-	2.2.1.7	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	M00096	R05636	RC00032	ko00000,ko00001,ko00002,ko01000	-	-	-	DXP_synthase_N,Transket_pyr,Transketolase_C
SX3_k127_3119925_4	1297865.APJD01000007_gene2149	5.877e-42	155.0	COG1722@1|root,COG1722@2|Bacteria,1PTYQ@1224|Proteobacteria,2UFD6@28211|Alphaproteobacteria,3K0ER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	xseB	-	3.1.11.6	ko:K03602	ko03430,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exonuc_VII_S
SX3_k127_3119925_2	1297865.APJD01000007_gene2150	1.351e-207	646.0	COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2TSX9@28211|Alphaproteobacteria,3JRBX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	BQ	Histone deacetylase domain	MA20_07590	-	-	ko:K04768	-	-	-	-	ko00000	-	-	-	Hist_deacetyl
SX3_k127_3119925_1	1297865.APJD01000007_gene2151	0.0	1124.0	COG0737@1|root,COG0737@2|Bacteria,1MX03@1224|Proteobacteria,2TTUP@28211|Alphaproteobacteria,3JTA0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the 5'-nucleotidase family	MA20_07595	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006213,GO:0006259,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007155,GO:0007159,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009164,GO:0009166,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019362,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0022610,GO:0031974,GO:0031981,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046135,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0051186,GO:0055086,GO:0070013,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0072524,GO:0072527,GO:0072529,GO:0090304,GO:0098609,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658	3.1.3.5,3.6.1.45	ko:K01081,ko:K11751	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	-	R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346	RC00017	ko00000,ko00001,ko01000	-	-	-	5_nucleotid_C,LysM,Metallophos
SX3_k127_3119925_3	1297865.APJD01000007_gene2152	8.526e-117	376.0	COG1024@1|root,COG1024@2|Bacteria,1Q67Q@1224|Proteobacteria,2U2T5@28211|Alphaproteobacteria,3JRE3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_3122041_1	1297865.APJD01000019_gene3157	1.092e-281	867.0	COG0477@1|root,COG2814@2|Bacteria,1MWKH@1224|Proteobacteria,2U0GU@28211|Alphaproteobacteria,3JR5H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	MA20_25060	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_3122041_3	1120792.JAFV01000001_gene3223	0.0003096	53.0	COG2304@1|root,COG2304@2|Bacteria,1QRPV@1224|Proteobacteria,2U2EX@28211|Alphaproteobacteria,36ZH5@31993|Methylocystaceae	28211|Alphaproteobacteria	S	von Willebrand factor type A domain	mxaC	-	-	ko:K16257	ko00680,ko01120,map00680,map01120	-	-	-	ko00000,ko00001	-	-	-	VWA_2
SX3_k127_3122041_0	1297865.APJD01000019_gene3158	0.0	1148.0	COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2TR49@28211|Alphaproteobacteria,3JRHC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Gamma-glutamyltranspeptidase	ggt	-	2.3.2.2,3.4.19.13	ko:K00681	ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100	-	R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935	RC00064,RC00090,RC00096	ko00000,ko00001,ko01000,ko01002	-	-	-	G_glu_transpept
SX3_k127_3122041_2	1297865.APJD01000019_gene3159	7.431e-274	847.0	COG2270@1|root,COG2270@2|Bacteria,1MWXB@1224|Proteobacteria,2TSCV@28211|Alphaproteobacteria,3JSCP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Major facilitator superfamily	MA20_25070	-	-	ko:K06902	ko04138,map04138	-	-	-	ko00000,ko00001,ko02000,ko04131	2.A.1.24,9.A.15.1	-	-	ATG22
SX3_k127_31330_3	1297865.APJD01000036_gene1442	4.533e-118	379.0	COG2096@1|root,COG2096@2|Bacteria,1RDUF@1224|Proteobacteria,2U5J1@28211|Alphaproteobacteria,3JS3E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobalamin adenosyltransferase	MA20_20540	-	2.5.1.17	ko:K00798	ko00860,ko01100,map00860,map01100	M00122	R01492,R05220,R07268	RC00533	ko00000,ko00001,ko00002,ko01000	-	-	-	Cob_adeno_trans
SX3_k127_31330_2	1297865.APJD01000036_gene1443	3.429e-151	479.0	COG2086@1|root,COG2086@2|Bacteria,1MVH6@1224|Proteobacteria,2TR4J@28211|Alphaproteobacteria,3JS7W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Electron transfer flavoprotein	etfB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114	-	ko:K03521	-	-	-	-	ko00000	-	-	-	ETF
SX3_k127_31330_1	1297865.APJD01000036_gene1444	1.433e-190	599.0	COG2025@1|root,COG2025@2|Bacteria,1MUFI@1224|Proteobacteria,2TR10@28211|Alphaproteobacteria,3JRD2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Electron transfer flavoprotein	etfA	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575	-	ko:K03522	-	-	-	-	ko00000,ko04147	-	-	-	ETF,ETF_alpha
SX3_k127_31330_0	1297865.APJD01000036_gene1445	7.439e-191	598.0	COG1250@1|root,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TR8E@28211|Alphaproteobacteria,3JUAA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	hbdA	-	1.1.1.157	ko:K00074	ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120	-	R01976,R05576,R06941	RC00029,RC00117	ko00000,ko00001,ko01000	-	-	-	3HCDH,3HCDH_N
SX3_k127_3152264_9	1297865.APJD01000003_gene6479	3.22e-145	461.0	COG2070@1|root,COG2070@2|Bacteria,1MU0U@1224|Proteobacteria,2TS5U@28211|Alphaproteobacteria,3JR77@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	MA20_20850	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_3152264_13	1297865.APJD01000003_gene6478	6.716e-100	328.0	2934B@1|root,2ZQMF@2|Bacteria,1R4T1@1224|Proteobacteria,2U1KR@28211|Alphaproteobacteria,3JU5Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3152264_10	1297865.APJD01000003_gene6477	1.602e-122	393.0	COG1238@1|root,COG1238@2|Bacteria,1MWED@1224|Proteobacteria,2U78A@28211|Alphaproteobacteria,3JRI3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DedA family	MA20_20865	-	-	-	-	-	-	-	-	-	-	-	SNARE_assoc
SX3_k127_3152264_15	1297865.APJD01000003_gene6476	6.05e-78	261.0	COG0140@1|root,COG0140@2|Bacteria,1MZEE@1224|Proteobacteria,2U7W6@28211|Alphaproteobacteria,3JZ2R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	phosphoribosyl-ATP diphosphatase activity	MA20_20870	-	3.6.1.31	ko:K01523	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04035	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	PRA-PH
SX3_k127_3152264_16	1230476.C207_02602	4.338e-69	238.0	2AN6J@1|root,31D4F@2|Bacteria,1REB1@1224|Proteobacteria,2U9IW@28211|Alphaproteobacteria,3JYW4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3152264_4	1297865.APJD01000003_gene6474	1.436e-219	683.0	COG0715@1|root,COG0715@2|Bacteria,1MW53@1224|Proteobacteria,2TSHF@28211|Alphaproteobacteria,3JSAQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1/THI5 like	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
SX3_k127_3152264_0	1297865.APJD01000003_gene6473	0.0	1137.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TSR1@28211|Alphaproteobacteria,3JSZB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Involved in beta-(1-- 2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP- binding domain (NBD) is responsible for energy generation	ndvA	GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0071702	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_3152264_2	1297865.APJD01000003_gene6472	6.197e-278	860.0	COG1686@1|root,COG1686@2|Bacteria,1MUU7@1224|Proteobacteria,2TT24@28211|Alphaproteobacteria,3JS1K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the peptidase S11 family	dacA3	-	3.4.16.4	ko:K01286	-	-	-	-	ko00000,ko01000	-	-	-	Peptidase_S11
SX3_k127_3152264_1	1297865.APJD01000003_gene6471	0.0	1133.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JR0N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	fadD	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_3152264_11	1297865.APJD01000003_gene6470	1.096e-120	391.0	COG3803@1|root,COG3803@2|Bacteria,1RHYI@1224|Proteobacteria,2U7AN@28211|Alphaproteobacteria,3JW9E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF924)	-	-	-	-	-	-	-	-	-	-	-	-	DUF924
SX3_k127_3152264_18	319003.Bra1253DRAFT_06100	2.291e-09	59.0	2ACCG@1|root,311XQ@2|Bacteria,1N2IH@1224|Proteobacteria,2UCXM@28211|Alphaproteobacteria,3K05X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3152264_12	1297865.APJD01000003_gene6469	4.753e-100	329.0	COG0678@1|root,COG0678@2|Bacteria,1MU0H@1224|Proteobacteria,2U6ZN@28211|Alphaproteobacteria,3JU03@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Redoxin	MA20_20905	-	1.11.1.15	ko:K03386	ko04214,map04214	-	-	-	ko00000,ko00001,ko01000,ko04147	-	-	-	Redoxin
SX3_k127_3152264_14	1038859.AXAU01000005_gene5176	2.377e-87	295.0	COG0328@1|root,COG0328@2|Bacteria,1RCZ1@1224|Proteobacteria,2U7C4@28211|Alphaproteobacteria,3JTPP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	rnhA	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576	3.1.26.4	ko:K03469	ko03030,map03030	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	RNase_H
SX3_k127_3152264_5	1297865.APJD01000003_gene6467	2.358e-214	667.0	COG2334@1|root,COG2334@2|Bacteria,1MUKJ@1224|Proteobacteria,2TS6D@28211|Alphaproteobacteria,3JQS5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the pseudomonas-type ThrB family	thrB	-	2.7.1.39	ko:K02204	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	M00018	R01771	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	APH
SX3_k127_3152264_6	1230476.C207_02593	3.944e-205	640.0	COG0761@1|root,COG0761@2|Bacteria,1MU7G@1224|Proteobacteria,2TRNR@28211|Alphaproteobacteria,3JSP9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IM	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis	ispH	-	1.17.7.4	ko:K03527	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05884,R08210	RC01137,RC01487	ko00000,ko00001,ko00002,ko01000	-	-	-	LYTB
SX3_k127_3152264_8	1297865.APJD01000003_gene6465	2.026e-146	465.0	COG3820@1|root,COG3820@2|Bacteria,1MVR2@1224|Proteobacteria,2TT8Z@28211|Alphaproteobacteria,3JT5H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1013)	MA20_20925	-	-	ko:K09987	-	-	-	-	ko00000	-	-	-	DUF1013
SX3_k127_3152264_3	1297865.APJD01000003_gene6464	1.459e-239	741.0	COG1835@1|root,COG1835@2|Bacteria,1MV2W@1224|Proteobacteria,2TRT8@28211|Alphaproteobacteria,3JVHT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_3152264_17	1230476.C207_02590	2.01e-49	179.0	29F1C@1|root,301Z4@2|Bacteria,1NAFW@1224|Proteobacteria,2UFJZ@28211|Alphaproteobacteria,3K1JN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_20930	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3152264_7	1297865.APJD01000003_gene6462	5.995e-186	580.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TQJR@28211|Alphaproteobacteria,3JV4X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acetyl-coenzyme A synthetase N-terminus	prpE	GO:0003674,GO:0003824,GO:0003987,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006091,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0017144,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046950,GO:0046951,GO:0070013,GO:0071704,GO:1901568,GO:1901570,GO:1901576,GO:1902224	6.2.1.1,6.2.1.17	ko:K01895,ko:K01908	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
SX3_k127_3177826_8	1297865.APJD01000019_gene3319	7.565e-191	597.0	COG0697@1|root,COG0697@2|Bacteria,1NDKG@1224|Proteobacteria,2U0DF@28211|Alphaproteobacteria,3JRQQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_44015	-	-	ko:K15270	-	-	-	-	ko00000,ko02000	2.A.7.3.7	-	-	EamA
SX3_k127_3177826_13	1297865.APJD01000019_gene3318	2.715e-101	330.0	COG2030@1|root,COG2030@2|Bacteria,1R4VU@1224|Proteobacteria,2U1U9@28211|Alphaproteobacteria,3JT0N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	MaoC like domain	MA20_44010	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
SX3_k127_3177826_10	1502851.FG93_05908	1.109e-165	526.0	COG0536@1|root,COG0536@2|Bacteria,1MUGZ@1224|Proteobacteria,2TR5I@28211|Alphaproteobacteria,3JR6H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control	obg	-	-	ko:K03979	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	GTP1_OBG,MMR_HSR1
SX3_k127_3177826_5	1297865.APJD01000019_gene3316	4.378e-261	809.0	COG0263@1|root,COG0263@2|Bacteria,1MUBG@1224|Proteobacteria,2TRKB@28211|Alphaproteobacteria,3JR70@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate	proB	GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.2.11	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	M00015	R00239	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase,PUA
SX3_k127_3177826_4	1297865.APJD01000019_gene3315	1.726e-271	837.0	COG0014@1|root,COG0014@2|Bacteria,1MUGJ@1224|Proteobacteria,2TS83@28211|Alphaproteobacteria,3JS5B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate	proA	GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114	1.2.1.41	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	M00015	R03313	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_3177826_11	1297865.APJD01000019_gene3314	6.84e-133	424.0	COG1057@1|root,COG1057@2|Bacteria,1RD0J@1224|Proteobacteria,2U6ZC@28211|Alphaproteobacteria,3JTPE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)	nadD	-	2.7.7.18	ko:K00969	ko00760,ko01100,map00760,map01100	M00115	R00137,R03005	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_like
SX3_k127_3177826_18	1297865.APJD01000019_gene3313	2.668e-77	260.0	COG0799@1|root,COG0799@2|Bacteria,1MZEF@1224|Proteobacteria,2UBSV@28211|Alphaproteobacteria,3JYP9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation	rsfS	-	-	ko:K09710	-	-	-	-	ko00000,ko03009	-	-	-	RsfS
SX3_k127_3177826_15	1297865.APJD01000019_gene3312	7.439e-96	316.0	COG1576@1|root,COG1576@2|Bacteria,1R9Z2@1224|Proteobacteria,2U95Q@28211|Alphaproteobacteria,3JTKT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA	rlmH	-	2.1.1.177	ko:K00783	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	SPOUT_MTase
SX3_k127_3177826_3	1297865.APJD01000019_gene3311	2.822e-275	849.0	COG4942@1|root,COG4942@2|Bacteria,1MY3E@1224|Proteobacteria,2TUSP@28211|Alphaproteobacteria,3JT1N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Peptidase family M23	filA	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
SX3_k127_3177826_2	1297865.APJD01000019_gene3310	5.7e-289	889.0	COG0793@1|root,COG0793@2|Bacteria,1MU39@1224|Proteobacteria,2TRW2@28211|Alphaproteobacteria,3JRNU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the peptidase S41A family	ctpA	-	3.4.21.102	ko:K03797	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	PDZ_2,Peptidase_S41
SX3_k127_3177826_6	1297865.APJD01000019_gene3309	1.762e-249	772.0	COG2861@1|root,COG2861@2|Bacteria,1N3JP@1224|Proteobacteria,2TUFD@28211|Alphaproteobacteria,3JRPC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Divergent polysaccharide deacetylase	-	-	-	ko:K09798	-	-	-	-	ko00000	-	-	-	Polysacc_deac_2
SX3_k127_3177826_12	1297865.APJD01000019_gene3308	1.099e-110	359.0	COG0494@1|root,COG0494@2|Bacteria,1RDGJ@1224|Proteobacteria,2U7GI@28211|Alphaproteobacteria,3JR8K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage	nudH	-	-	ko:K08311	ko03018,map03018	-	R10816	RC00002	ko00000,ko00001,ko01000,ko03019	-	-	-	NUDIX
SX3_k127_3177826_19	1123366.TH3_04319	1.189e-35	141.0	COG1051@1|root,COG1051@2|Bacteria,1QU0T@1224|Proteobacteria,2TW25@28211|Alphaproteobacteria,2JSS3@204441|Rhodospirillales	204441|Rhodospirillales	F	Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage	nudH	-	-	ko:K08311	ko03018,map03018	-	R10816	RC00002	ko00000,ko00001,ko01000,ko03019	-	-	-	NUDIX
SX3_k127_3177826_7	1297865.APJD01000019_gene3306	4.017e-213	664.0	COG2207@1|root,COG2207@2|Bacteria,1N3QH@1224|Proteobacteria,2U1E7@28211|Alphaproteobacteria,3JU9B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,AraC_binding_2,HTH_18
SX3_k127_3177826_17	1297865.APJD01000019_gene3305	9.681e-90	296.0	COG0355@1|root,COG0355@2|Bacteria,1RHE4@1224|Proteobacteria,2UBXX@28211|Alphaproteobacteria,3JY3Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Produces ATP from ADP in the presence of a proton gradient across the membrane	atpC	GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600	-	ko:K02113,ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_DE_N
SX3_k127_3177826_1	1297865.APJD01000019_gene3304	4.466e-310	951.0	COG0055@1|root,COG0055@2|Bacteria,1MUFU@1224|Proteobacteria,2TRGP@28211|Alphaproteobacteria,3JTVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits	atpD	-	3.6.3.14	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1	-	-	ATP-synt_ab,ATP-synt_ab_N
SX3_k127_3177826_9	1297865.APJD01000019_gene3303	2.54e-171	540.0	COG0224@1|root,COG0224@2|Bacteria,1MU28@1224|Proteobacteria,2TR11@28211|Alphaproteobacteria,3JTH0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex	atpG	-	-	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt
SX3_k127_3177826_0	1297865.APJD01000019_gene3302	0.0	997.0	COG0056@1|root,COG0056@2|Bacteria,1MUG7@1224|Proteobacteria,2TQYK@28211|Alphaproteobacteria,3JRUG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit	atpA	-	3.6.3.14	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko01000	3.A.2.1	-	-	ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
SX3_k127_3177826_14	1230476.C207_04655	3.801e-100	329.0	COG0712@1|root,COG0712@2|Bacteria,1MVRH@1224|Proteobacteria,2U5IC@28211|Alphaproteobacteria,3JSRB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation	atpH	-	-	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	OSCP
SX3_k127_3177826_16	1297865.APJD01000019_gene3300	3.082e-95	315.0	COG0797@1|root,COG0797@2|Bacteria,1MZ8S@1224|Proteobacteria,2UBTC@28211|Alphaproteobacteria,3JWQF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	rlpA	-	-	ko:K03642	-	-	-	-	ko00000	-	-	-	DPBB_1
SX3_k127_3194784_9	1297865.APJD01000014_gene508	1.981e-93	308.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TQKE@28211|Alphaproteobacteria,3JRHU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_27425	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_3194784_10	743836.AYNA01000035_gene705	1.476e-05	48.0	COG0270@1|root,COG0270@2|Bacteria,1MV9H@1224|Proteobacteria,2TTZG@28211|Alphaproteobacteria,36XGS@31993|Methylocystaceae	28211|Alphaproteobacteria	L	C-5 cytosine-specific DNA methylase	-	-	2.1.1.37	ko:K00558	ko00270,ko01100,ko05206,map00270,map01100,map05206	M00035	R04858	RC00003,RC00332	ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_methylase
SX3_k127_3194784_0	1297865.APJD01000014_gene509	0.0	1013.0	COG1012@1|root,COG1012@2|Bacteria,1MUHV@1224|Proteobacteria,2TSMD@28211|Alphaproteobacteria,3JVCG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Acyl-CoA reductase (LuxC)	mmsA	GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008150,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050896	1.2.1.18,1.2.1.27	ko:K00140	ko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200	M00013	R00705,R00706,R00922,R00935	RC00004,RC02723,RC02817	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_3194784_2	1297865.APJD01000014_gene510	7.298e-192	602.0	COG0583@1|root,COG0583@2|Bacteria,1MWVB@1224|Proteobacteria,2TQXV@28211|Alphaproteobacteria,3JSNI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR family	MA20_27415	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3194784_7	1297865.APJD01000014_gene511	3.254e-123	396.0	COG1309@1|root,COG1309@2|Bacteria,1N1Q3@1224|Proteobacteria,2TVF4@28211|Alphaproteobacteria,3JQVY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	ko:K16137	-	-	-	-	ko00000,ko03000	-	-	-	TetR_N
SX3_k127_3194784_8	1297865.APJD01000014_gene512	1.852e-108	352.0	COG2050@1|root,COG2050@2|Bacteria,1RK46@1224|Proteobacteria,2U29Q@28211|Alphaproteobacteria,3JW02@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Domain of unknown function (DUF4442)	MA20_27405	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_3194784_4	1297865.APJD01000014_gene513	1.097e-166	525.0	COG1024@1|root,COG1024@2|Bacteria,1PU1Q@1224|Proteobacteria,2TSW6@28211|Alphaproteobacteria,3JUKI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_27400	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_3194784_3	1297865.APJD01000014_gene514	1.939e-169	533.0	COG1414@1|root,COG1414@2|Bacteria	2|Bacteria	K	Transcriptional regulator	-	-	-	ko:K13641	-	-	-	-	ko00000,ko03000	-	-	-	HTH_IclR,IclR
SX3_k127_3194784_5	1297865.APJD01000014_gene515	3.681e-158	504.0	COG2267@1|root,COG2267@2|Bacteria,1MX0N@1224|Proteobacteria	1224|Proteobacteria	I	Alpha beta hydrolase	catD	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_4,Abhydrolase_6,SnoaL_2
SX3_k127_3194784_6	1297865.APJD01000014_gene516	5.744e-133	423.0	COG3506@1|root,COG3506@2|Bacteria,1R7MF@1224|Proteobacteria,2U3WE@28211|Alphaproteobacteria,3JXEP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1349)	-	-	-	ko:K09702	-	-	-	-	ko00000	-	-	-	DUF1349
SX3_k127_3194784_1	1297865.APJD01000014_gene517	2.208e-259	801.0	COG0243@1|root,COG0243@2|Bacteria,1MU6B@1224|Proteobacteria,2TTUX@28211|Alphaproteobacteria,3JUJ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family	-	-	-	-	-	-	-	-	-	-	-	-	Molybdopterin,Molydop_binding
SX3_k127_3196427_1	1297865.APJD01000005_gene3655	3.368e-243	750.0	COG1657@1|root,COG1657@2|Bacteria,1MUIP@1224|Proteobacteria,2TRF3@28211|Alphaproteobacteria,3JRDS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Squalene-hopene cyclase C-terminal domain	shc	-	4.2.1.129,5.4.99.17	ko:K06045	ko00909,ko01110,map00909,map01110	-	R07322,R07323	RC01850,RC01851	ko00000,ko00001,ko01000	-	-	-	SQHop_cyclase_C,SQHop_cyclase_N
SX3_k127_3196427_2	1230476.C207_05605	3.782e-144	459.0	COG0775@1|root,COG0775@2|Bacteria,1PETT@1224|Proteobacteria,2TTTB@28211|Alphaproteobacteria,3JRPM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Phosphorylase superfamily	MA20_16045	-	3.2.2.9	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	M00034,M00609	R00194,R01401	RC00063,RC00318	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_UDP_1
SX3_k127_3196427_3	1297865.APJD01000005_gene3657	1.522e-122	394.0	COG1309@1|root,COG1309@2|Bacteria,1RJK5@1224|Proteobacteria,2TUC9@28211|Alphaproteobacteria,3JWDB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_3196427_0	1297865.APJD01000005_gene3658	3.775e-283	875.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQU2@28211|Alphaproteobacteria,3JW1N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	ko:K09456	-	-	-	-	ko00000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M
SX3_k127_3200385_10	1125863.JAFN01000001_gene1269	0.0005539	47.0	2C2IA@1|root,2ZW5P@2|Bacteria,1PB15@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3200385_9	345341.KUTG_09521	0.0001215	54.0	COG3209@1|root,COG3209@2|Bacteria,2GMBB@201174|Actinobacteria,4E2E3@85010|Pseudonocardiales	201174|Actinobacteria	M	TIGRFAM RHS repeat-associated core domain	-	-	-	-	-	-	-	-	-	-	-	-	Endonuclea_NS_2,Laminin_G_3,PT-HINT,RHS_repeat
SX3_k127_3200385_5	1217656.F964_04227	8.833e-11	74.0	2E3B7@1|root,32YAR@2|Bacteria,1NA75@1224|Proteobacteria,1TN5D@1236|Gammaproteobacteria,3NQ0V@468|Moraxellaceae	1236|Gammaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3200385_6	1353529.M899_2545	3.131e-10	73.0	2EGQU@1|root,33AGZ@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Collagen
SX3_k127_3200385_1	1502852.FG94_04995	3.152e-98	337.0	28MJ5@1|root,2ZAVR@2|Bacteria,1R5CR@1224|Proteobacteria,2W1FE@28216|Betaproteobacteria	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3200385_2	1156919.QWC_12548	2.794e-87	300.0	2CK1H@1|root,33WMM@2|Bacteria,1RF5H@1224|Proteobacteria	1224|Proteobacteria	S	Protein of unknown function (DUF4043)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4043
SX3_k127_3200385_7	247490.KSU1_C1502	5.911e-08	65.0	2C1GC@1|root,2ZDHA@2|Bacteria	2|Bacteria	S	Uncharacterized conserved protein (DUF2190)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2190
SX3_k127_3200385_0	1156919.QWC_12538	8.084e-109	378.0	COG3170@1|root,COG3170@2|Bacteria,1N4R0@1224|Proteobacteria,2VPR6@28216|Betaproteobacteria	28216|Betaproteobacteria	NU	Tfp pilus assembly protein FimV	-	-	-	-	-	-	-	-	-	-	-	-	P22_portal
SX3_k127_3200385_3	596153.Alide_1641	1.971e-56	203.0	2EKAP@1|root,33E0Y@2|Bacteria,1NAAI@1224|Proteobacteria,2VZTN@28216|Betaproteobacteria	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3200385_4	1156919.QWC_12533	1.307e-30	124.0	COG5362@1|root,COG5410@1|root,COG5362@2|Bacteria,COG5410@2|Bacteria,1NKZK@1224|Proteobacteria,2VM59@28216|Betaproteobacteria,3T7Q0@506|Alcaligenaceae	28216|Betaproteobacteria	S	Terminase-like family	-	-	-	-	-	-	-	-	-	-	-	-	Terminase_6,Terminase_6C
SX3_k127_3202592_25	1230476.C207_06301	1.263e-54	191.0	2EKBW@1|root,33E29@2|Bacteria,1NEBH@1224|Proteobacteria,2UJN8@28211|Alphaproteobacteria,3K1Y5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3202592_31	113395.AXAI01000002_gene5432	2.388e-05	49.0	COG3064@1|root,COG3064@2|Bacteria,1R6JV@1224|Proteobacteria,2U5NE@28211|Alphaproteobacteria,3JTDC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Membrane	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3202592_29	1230476.C207_06302	5.039e-16	77.0	COG1372@1|root,COG1372@2|Bacteria	2|Bacteria	L	intein-mediated protein splicing	-	-	-	-	-	-	-	-	-	-	-	-	PT-HINT
SX3_k127_3202592_26	1297865.APJD01000003_gene6182	4.447e-54	191.0	2EKBW@1|root,33E29@2|Bacteria,1NEBH@1224|Proteobacteria,2UJN8@28211|Alphaproteobacteria,3K1Y5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3202592_22	1297865.APJD01000003_gene6181	3.062e-92	323.0	COG3577@1|root,COG3577@2|Bacteria,1N2PE@1224|Proteobacteria,2U61J@28211|Alphaproteobacteria,3JVUR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	gag-polyprotein putative aspartyl protease	MA20_21995	-	-	ko:K06985	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	gag-asp_proteas
SX3_k127_3202592_32	1101190.ARWB01000001_gene2994	0.0004509	46.0	COG1947@1|root,COG1947@2|Bacteria,1MVU3@1224|Proteobacteria,2TUFV@28211|Alphaproteobacteria,36Y3Y@31993|Methylocystaceae	28211|Alphaproteobacteria	I	GHMP kinases N terminal domain	ispE	GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515	2.7.1.148	ko:K00919	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05634	RC00002,RC01439	ko00000,ko00001,ko00002,ko01000	-	-	-	GHMP_kinases_C,GHMP_kinases_N
SX3_k127_3202592_1	1297865.APJD01000003_gene6180	1.775e-318	978.0	COG1953@1|root,COG1953@2|Bacteria,1MV18@1224|Proteobacteria,2TRTH@28211|Alphaproteobacteria,3JXE8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	FH	Permease for cytosine/purines, uracil, thiamine, allantoin	pucI	-	-	ko:K03457	-	-	-	-	ko00000	2.A.39	-	-	Transp_cyt_pur
SX3_k127_3202592_0	1297865.APJD01000003_gene6179	0.0	1588.0	COG1643@1|root,COG1643@2|Bacteria,1MUEQ@1224|Proteobacteria,2TRMJ@28211|Alphaproteobacteria,3JT3T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	ATP-dependent helicase	hrpB	-	3.6.4.13	ko:K03579	-	-	-	-	ko00000,ko01000	-	-	-	DEAD,HA2,Helicase_C,HrpB_C
SX3_k127_3202592_8	1297865.APJD01000003_gene6178	1.713e-226	704.0	COG4763@1|root,COG4763@2|Bacteria,1Q61M@1224|Proteobacteria,2TR19@28211|Alphaproteobacteria,3JS8D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_3202592_16	1297865.APJD01000003_gene6177	9.323e-123	395.0	COG1595@1|root,COG1595@2|Bacteria,1MVPD@1224|Proteobacteria,2TVKC@28211|Alphaproteobacteria,3JTG2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	MA20_22745	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4,Sigma70_r4_2
SX3_k127_3202592_14	1297865.APJD01000003_gene6176	9.419e-136	436.0	COG0785@1|root,COG0785@2|Bacteria,1MVV0@1224|Proteobacteria,2TUNG@28211|Alphaproteobacteria,3JTPY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Cytochrome C biogenesis protein transmembrane region	MA20_22750	-	-	-	-	-	-	-	-	-	-	-	DsbD
SX3_k127_3202592_17	1230476.C207_06291	1.063e-121	391.0	COG0526@1|root,COG0526@2|Bacteria,1QTY9@1224|Proteobacteria,2TW6Y@28211|Alphaproteobacteria,3JRHB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CO	Thioredoxin-like	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,NHL,Redoxin,Thioredoxin_8
SX3_k127_3202592_2	1297865.APJD01000003_gene6174	7.023e-308	944.0	COG1271@1|root,COG1271@2|Bacteria,1MV60@1224|Proteobacteria,2TQMA@28211|Alphaproteobacteria,3JREF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome bd terminal oxidase subunit I	cydA	-	1.10.3.14	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00153	R11325	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	Cyt_bd_oxida_I
SX3_k127_3202592_9	1297865.APJD01000003_gene6173	9.755e-219	687.0	COG1294@1|root,COG1294@2|Bacteria,1MURP@1224|Proteobacteria,2TU3I@28211|Alphaproteobacteria,3JT59@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	oxidase, subunit II	cydB	-	1.10.3.14	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00153	R11325	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	Cyt_bd_oxida_II
SX3_k127_3202592_28	1297865.APJD01000003_gene6172	2.406e-18	98.0	2AGM6@1|root,316UD@2|Bacteria,1NIF3@1224|Proteobacteria,2UJFT@28211|Alphaproteobacteria,3K1SA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3202592_15	1297865.APJD01000003_gene6171	7.141e-130	416.0	COG1376@1|root,COG1376@2|Bacteria,1MVYT@1224|Proteobacteria,2U60K@28211|Alphaproteobacteria,3JRA0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	MA20_22765	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_3202592_7	1297865.APJD01000003_gene6170	3.56e-231	717.0	COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2TSRF@28211|Alphaproteobacteria,3JTGX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Belongs to the bacterial solute-binding protein 3 family	MA20_22770	-	-	ko:K09969	ko02010,map02010	M00232	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	SBP_bac_3
SX3_k127_3202592_6	1297865.APJD01000003_gene6169	1.712e-234	729.0	COG1960@1|root,COG1960@2|Bacteria,1MUBH@1224|Proteobacteria,2TVBB@28211|Alphaproteobacteria,3JRDX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_22775	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_3202592_3	1297865.APJD01000003_gene6168	1.952e-264	815.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TUVB@28211|Alphaproteobacteria,3JRBV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_22780	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_3202592_18	1230476.C207_06283	4.067e-112	372.0	COG2128@1|root,COG2128@2|Bacteria,1NFKC@1224|Proteobacteria,2TQSD@28211|Alphaproteobacteria,3JVN8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	decarboxylase	MA20_22785	-	4.1.1.44	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R03470	RC00938	ko00000,ko00001,ko01000	-	-	-	CMD
SX3_k127_3202592_19	1297865.APJD01000003_gene6166	5.684e-105	346.0	COG2514@1|root,COG2514@2|Bacteria,1RBC7@1224|Proteobacteria,2U5JP@28211|Alphaproteobacteria,3JR7C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	MA20_22790	-	1.13.11.2	ko:K07104	ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220	M00569	R00816,R04089,R05295,R05404,R05406,R07795	RC00387,RC00643,RC01075,RC01364,RC01914	ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_3202592_5	1297865.APJD01000003_gene6165	8.891e-250	773.0	COG0477@1|root,COG2814@2|Bacteria,1N7AK@1224|Proteobacteria,2TUVF@28211|Alphaproteobacteria,3JTAK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_22795	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_3202592_4	1297865.APJD01000003_gene6164	1.696e-262	812.0	COG0477@1|root,COG2814@2|Bacteria,1MW59@1224|Proteobacteria,2TRA3@28211|Alphaproteobacteria,3JT8D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_22800	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_3202592_20	1297865.APJD01000003_gene6163	5.955e-105	341.0	COG1598@1|root,COG1598@2|Bacteria,1RIRX@1224|Proteobacteria,2U92H@28211|Alphaproteobacteria,3JZB1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HicB_like antitoxin of bacterial toxin-antitoxin system	-	-	-	-	-	-	-	-	-	-	-	-	HicB_lk_antitox
SX3_k127_3202592_10	1297865.APJD01000003_gene6162	1.137e-194	607.0	COG2518@1|root,COG2518@2|Bacteria,1RAIE@1224|Proteobacteria,2U6D7@28211|Alphaproteobacteria,3JUZU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)	pcm1	-	2.1.1.77	ko:K00573	-	-	-	-	ko00000,ko01000	-	-	-	PCMT
SX3_k127_3202592_13	1297865.APJD01000003_gene6161	2.768e-153	484.0	COG2813@1|root,COG2813@2|Bacteria,1RHAE@1224|Proteobacteria,2U5V5@28211|Alphaproteobacteria,3JU02@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Protein of unknown function (DUF938)	-	-	-	-	-	-	-	-	-	-	-	-	DUF938
SX3_k127_3202592_23	1297865.APJD01000003_gene6160	1.638e-66	229.0	COG2010@1|root,COG2010@2|Bacteria,1N91W@1224|Proteobacteria,2U7G5@28211|Alphaproteobacteria,3JZ64@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	ko:K17223	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	Cytochrom_C,Cytochrome_CBB3
SX3_k127_3202592_21	1297865.APJD01000003_gene6159	1.362e-96	317.0	COG5501@1|root,COG5501@2|Bacteria,1RH4J@1224|Proteobacteria,2TUH8@28211|Alphaproteobacteria,3JRF4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfur oxidation protein SoxY	MA20_22820	-	-	ko:K17226	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	SoxY
SX3_k127_3202592_24	1297865.APJD01000003_gene6158	1.601e-62	215.0	COG5501@1|root,COG5501@2|Bacteria,1N097@1224|Proteobacteria,2U9JC@28211|Alphaproteobacteria,3JZE0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulphur oxidation protein SoxZ	MA20_22825	-	-	ko:K17227	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	SoxZ
SX3_k127_3202592_11	1297865.APJD01000003_gene6157	5.924e-190	595.0	COG3258@1|root,COG3258@2|Bacteria,1MXB0@1224|Proteobacteria,2TTDW@28211|Alphaproteobacteria,3JVCB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Thiosulfate-oxidizing multienzyme system protein SoxA	MA20_22830	-	-	ko:K17222	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	-
SX3_k127_3202592_27	1297865.APJD01000003_gene6156	1.018e-51	188.0	28QR0@1|root,2ZD6F@2|Bacteria,1RIBT@1224|Proteobacteria,2UA2N@28211|Alphaproteobacteria,3JZF0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_22835	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3202592_12	1297865.APJD01000003_gene6155	2.931e-169	538.0	COG0737@1|root,COG0737@2|Bacteria,1MX03@1224|Proteobacteria,2TUAE@28211|Alphaproteobacteria,3JWMX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the 5'-nucleotidase family	MA20_22840	-	-	ko:K17224	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	5_nucleotid_C,Metallophos
SX3_k127_320995_4	172088.AUGA01000011_gene2664	2.643e-41	154.0	COG1987@1|root,COG1987@2|Bacteria,1N73W@1224|Proteobacteria,2UBX6@28211|Alphaproteobacteria,3JZC2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Role in flagellar biosynthesis	fliQ	-	-	ko:K02420	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	Bac_export_3
SX3_k127_320995_2	1297865.APJD01000008_gene5595	7.95e-147	467.0	COG1684@1|root,COG1684@2|Bacteria,1NIF4@1224|Proteobacteria,2TTHN@28211|Alphaproteobacteria,3JVDK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Role in flagellar biosynthesis	fliR	-	-	ko:K02421	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	Bac_export_1
SX3_k127_320995_1	1297865.APJD01000008_gene5594	7.574e-220	683.0	COG1377@1|root,COG1377@2|Bacteria,1MUWI@1224|Proteobacteria,2TS13@28211|Alphaproteobacteria,3JRW6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin	flhB	-	-	ko:K02401	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2	-	-	Bac_export_2
SX3_k127_320995_0	1297865.APJD01000008_gene5593	0.0	1696.0	COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JTUH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	cckA	-	2.7.13.3	ko:K13587	ko02020,ko04112,map02020,map04112	M00512	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS,PAS_4,PAS_8,PAS_9,Response_reg
SX3_k127_320995_3	172088.AUGA01000011_gene2668	4.607e-142	455.0	COG4395@1|root,COG4395@2|Bacteria,1NSUG@1224|Proteobacteria,2U0SF@28211|Alphaproteobacteria,3JR8D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tim44	MA20_08550	-	-	-	-	-	-	-	-	-	-	-	Tim44
SX3_k127_321278_21	1230476.C207_00923	7.756e-67	229.0	COG1314@1|root,COG1314@2|Bacteria,1N8MF@1224|Proteobacteria,2UCIP@28211|Alphaproteobacteria,3JYS8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Preprotein translocase SecG subunit	secG	-	-	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	SecG
SX3_k127_321278_14	1297865.APJD01000020_gene247	1.053e-112	366.0	COG1813@1|root,COG1813@2|Bacteria,1QU3A@1224|Proteobacteria,2TVXJ@28211|Alphaproteobacteria,3K6NU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2,HTH_3
SX3_k127_321278_15	1297865.APJD01000020_gene246	4.687e-110	356.0	COG0454@1|root,COG0456@2|Bacteria,1RBE6@1224|Proteobacteria,2U9H8@28211|Alphaproteobacteria,3JX99@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	ttr	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
SX3_k127_321278_9	1297865.APJD01000020_gene245	1.26e-157	497.0	COG0149@1|root,COG0149@2|Bacteria,1MWK5@1224|Proteobacteria,2TS6I@28211|Alphaproteobacteria,3JRGS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)	tpiA	GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616	5.3.1.1	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003	R01015	RC00423	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	TIM
SX3_k127_321278_1	1297865.APJD01000020_gene244	0.0	1195.0	COG0760@1|root,COG0760@2|Bacteria,1MWV0@1224|Proteobacteria,2TRYU@28211|Alphaproteobacteria,3JQRF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Peptidylprolyl isomerase	ppiD	-	5.2.1.8	ko:K01802,ko:K03770	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase_2,SurA_N_3
SX3_k127_321278_6	1297865.APJD01000020_gene243	2.333e-206	644.0	COG0547@1|root,COG0547@2|Bacteria,1MUPV@1224|Proteobacteria,2TR8S@28211|Alphaproteobacteria,3JVIJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)	trpD	GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.4.2.18,4.1.3.27	ko:K00766,ko:K13497	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R00985,R00986,R01073	RC00010,RC00440,RC02148,RC02414	ko00000,ko00001,ko00002,ko01000	-	-	-	Glycos_trans_3N,Glycos_transf_3
SX3_k127_321278_8	1297865.APJD01000020_gene242	5.055e-164	520.0	COG0134@1|root,COG0134@2|Bacteria,1MW5K@1224|Proteobacteria,2TSZE@28211|Alphaproteobacteria,3JQR7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the TrpC family	trpC	GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831	4.1.1.48,5.3.1.24	ko:K01609,ko:K13498	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03508,R03509	RC00944,RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	IGPS
SX3_k127_321278_16	1297865.APJD01000020_gene241	6.349e-101	330.0	COG0315@1|root,COG0315@2|Bacteria,1RCYZ@1224|Proteobacteria,2U747@28211|Alphaproteobacteria,3JR9A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP)	moaC	-	4.6.1.17	ko:K03637	ko00790,ko01100,ko04122,map00790,map01100,map04122	-	R11372	RC03425	ko00000,ko00001,ko01000	-	-	-	MoaC
SX3_k127_321278_23	1297865.APJD01000020_gene240	1.389e-24	104.0	COG3847@1|root,COG3847@2|Bacteria,1NBIR@1224|Proteobacteria,2UGAM@28211|Alphaproteobacteria,3K1HV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Flp/Fap pilin component	-	-	-	-	-	-	-	-	-	-	-	-	Flp_Fap
SX3_k127_321278_0	1297865.APJD01000020_gene239	0.0	1785.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JRAF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_7,PAS_8,dCache_1
SX3_k127_321278_3	1297865.APJD01000020_gene238	4.446e-293	900.0	COG0793@1|root,COG0793@2|Bacteria,1MU39@1224|Proteobacteria,2TRW2@28211|Alphaproteobacteria,3JVC7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	tail specific protease	ctpA	-	3.4.21.102	ko:K03797	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	PDZ_2,Peptidase_S41
SX3_k127_321278_4	1297865.APJD01000020_gene237	3.708e-268	827.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria,3JW42@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_FMN
SX3_k127_321278_13	1297865.APJD01000020_gene236	7.279e-117	378.0	COG1611@1|root,COG1611@2|Bacteria,1RD59@1224|Proteobacteria,2U5DP@28211|Alphaproteobacteria,3JW4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Possible lysine decarboxylase	-	-	3.2.2.10	ko:K06966	ko00230,ko00240,map00230,map00240	-	R00182,R00510	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	Lysine_decarbox
SX3_k127_321278_24	318996.AXAZ01000086_gene748	2.289e-21	102.0	2DI61@1|root,3024G@2|Bacteria,1P3IZ@1224|Proteobacteria,2UVE0@28211|Alphaproteobacteria,3K4V6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_321278_19	1297865.APJD01000020_gene234	5.665e-90	297.0	COG2227@1|root,COG2227@2|Bacteria	2|Bacteria	H	3-demethylubiquinone-9 3-O-methyltransferase activity	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23,Methyltransf_25
SX3_k127_321278_11	1297865.APJD01000020_gene233	1.528e-131	422.0	COG0637@1|root,COG0637@2|Bacteria,1NF90@1224|Proteobacteria,2U9G8@28211|Alphaproteobacteria,3JVHQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	HAD_2
SX3_k127_321278_17	1297865.APJD01000020_gene232	3.579e-92	305.0	COG0454@1|root,COG0456@2|Bacteria,1RKG2@1224|Proteobacteria,2U92Z@28211|Alphaproteobacteria,3JZAT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_321278_18	1245469.S58_08070	2.054e-91	306.0	COG0346@1|root,COG0346@2|Bacteria,1RD81@1224|Proteobacteria,2U7VR@28211|Alphaproteobacteria,3JXQ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase_3
SX3_k127_321278_25	639283.Snov_0407	4.839e-15	80.0	COG1018@1|root,COG1018@2|Bacteria,1R1A8@1224|Proteobacteria,2TYZI@28211|Alphaproteobacteria,3EZV3@335928|Xanthobacteraceae	2|Bacteria	C	Oxidoreductase FAD-binding domain	-	-	1.14.12.17	ko:K05916	ko05132,map05132	-	-	-	ko00000,ko00001,ko01000	-	-	-	FAD_binding_6,Globin,NAD_binding_1,PAS,Protoglobin
SX3_k127_321278_7	1297865.APJD01000020_gene229	4.728e-190	594.0	COG0834@1|root,COG0834@2|Bacteria,1R723@1224|Proteobacteria,2TU3B@28211|Alphaproteobacteria,3JUPE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	MA20_26730	-	-	ko:K10001	ko02010,ko02020,map02010,map02020	M00230	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.19,3.A.1.3.4	-	-	SBP_bac_3
SX3_k127_321278_12	1297865.APJD01000020_gene228	9.987e-126	407.0	COG1011@1|root,COG1011@2|Bacteria,1PGNF@1224|Proteobacteria,2TWR1@28211|Alphaproteobacteria,3JRHW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	MA20_37750	-	3.1.3.10	ko:K20866	ko00010,ko01120,map00010,map01120	-	R00947	RC00078	ko00000,ko00001,ko01000	-	-	-	HAD_2
SX3_k127_321278_5	1297865.APJD01000020_gene227	2.832e-249	771.0	COG0303@1|root,COG0303@2|Bacteria,1MVD5@1224|Proteobacteria,2TQRI@28211|Alphaproteobacteria,3JRTS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	MoeA C-terminal region (domain IV)	moeA	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0018315,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0032324,GO:0034641,GO:0036211,GO:0042040,GO:0042278,GO:0042802,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0061598,GO:0061599,GO:0070566,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657	2.10.1.1	ko:K03750	ko00790,ko01100,map00790,map01100	-	R09735	RC03462	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,MoeA_C,MoeA_N
SX3_k127_321278_10	1297865.APJD01000020_gene226	2.605e-145	464.0	COG1974@1|root,COG1974@2|Bacteria,1MW80@1224|Proteobacteria,2TT7W@28211|Alphaproteobacteria,3JS89@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	lexA	GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031668,GO:0032991,GO:0032993,GO:0033554,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141	3.4.21.88	ko:K01356	-	M00729	-	-	ko00000,ko00002,ko01000,ko01002,ko03400	-	-	-	LexA_DNA_bind,Peptidase_S24
SX3_k127_321278_20	1297865.APJD01000020_gene225	8.598e-89	295.0	2F7IU@1|root,33ZZE@2|Bacteria,1RBQ7@1224|Proteobacteria,2UC36@28211|Alphaproteobacteria,3JZ42@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_37725	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_321278_22	1297865.APJD01000020_gene224	2.702e-45	166.0	29EGQ@1|root,301EM@2|Bacteria,1N7HJ@1224|Proteobacteria,2UG8X@28211|Alphaproteobacteria,3K1HR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_321278_2	1297865.APJD01000020_gene223	0.0	1170.0	COG0658@1|root,COG0658@2|Bacteria,1MUKF@1224|Proteobacteria,2TRD5@28211|Alphaproteobacteria,3JRIG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Competence protein	-	-	-	ko:K02238	-	M00429	-	-	ko00000,ko00002,ko02044	3.A.11.1,3.A.11.2	-	-	Competence,DUF4131
SX3_k127_3214091_6	1297865.APJD01000003_gene6155	7.833e-210	651.0	COG0737@1|root,COG0737@2|Bacteria,1MX03@1224|Proteobacteria,2TUAE@28211|Alphaproteobacteria,3JWMX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the 5'-nucleotidase family	MA20_22840	-	-	ko:K17224	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	5_nucleotid_C,Metallophos
SX3_k127_3214091_12	1297865.APJD01000003_gene6154	1.323e-87	295.0	COG1416@1|root,COG1416@2|Bacteria,1RBQX@1224|Proteobacteria,2U6BV@28211|Alphaproteobacteria,3JY5C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	ko:K09004	-	-	-	-	ko00000	-	-	-	DrsE
SX3_k127_3214091_10	1297865.APJD01000003_gene6153	4.46e-90	297.0	COG1416@1|root,COG1416@2|Bacteria,1RE8C@1224|Proteobacteria,2U80W@28211|Alphaproteobacteria,3K5T7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DsrE/DsrF-like family	-	-	-	ko:K09004	-	-	-	-	ko00000	-	-	-	DrsE
SX3_k127_3214091_5	1297865.APJD01000003_gene6152	3.313e-227	704.0	COG0491@1|root,COG0607@1|root,COG0491@2|Bacteria,COG0607@2|Bacteria,1MURA@1224|Proteobacteria,2TR1F@28211|Alphaproteobacteria,3JUUY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	MA20_22850	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B,Rhodanese
SX3_k127_3214091_8	1297865.APJD01000003_gene6151	1.148e-172	544.0	COG0614@1|root,COG0614@2|Bacteria,1RAUP@1224|Proteobacteria,2TUB0@28211|Alphaproteobacteria,3JT3Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	PFAM periplasmic binding protein	-	-	-	ko:K02016	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.14	-	-	Peripla_BP_2
SX3_k127_3214091_9	1297865.APJD01000003_gene6150	1.805e-150	496.0	COG1120@1|root,COG1120@2|Bacteria,1QPWJ@1224|Proteobacteria,2U1TK@28211|Alphaproteobacteria,3JUXQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	HP	ABC transporter	-	-	3.6.3.34	ko:K02013	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.14	-	-	ABC_tran
SX3_k127_3214091_7	1297865.APJD01000003_gene6149	1.278e-198	627.0	COG0609@1|root,COG0609@2|Bacteria,1MV9W@1224|Proteobacteria,2TR9A@28211|Alphaproteobacteria,3JWF5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	-	-	-	ko:K02015	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.14	-	-	FecCD
SX3_k127_3214091_0	1297865.APJD01000003_gene6148	0.0	1465.0	COG4206@1|root,COG4206@2|Bacteria,1MW63@1224|Proteobacteria,2TX02@28211|Alphaproteobacteria,3JUXU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_3214091_3	1297865.APJD01000003_gene6146	2.371e-281	865.0	COG0189@1|root,COG0189@2|Bacteria,1R70M@1224|Proteobacteria,2TVHR@28211|Alphaproteobacteria,3JT4M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	HJ	ligase activity	-	-	-	-	-	-	-	-	-	-	-	-	ATP-grasp_3
SX3_k127_3214091_4	1297865.APJD01000003_gene6145	7.451e-247	766.0	COG2271@1|root,COG2271@2|Bacteria,1QU9E@1224|Proteobacteria,2TWHH@28211|Alphaproteobacteria,3JV76@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	MA20_22860	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_3214091_2	1297865.APJD01000003_gene6144	0.0	1037.0	COG3025@1|root,COG5607@1|root,COG3025@2|Bacteria,COG5607@2|Bacteria,1MY43@1224|Proteobacteria,2TQRV@28211|Alphaproteobacteria,3JTZA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CYTH	-	-	-	-	-	-	-	-	-	-	-	-	CHAD,CYTH
SX3_k127_3214091_11	1297865.APJD01000003_gene6143	1.581e-88	293.0	COG1846@1|root,COG1846@2|Bacteria,1N0KC@1224|Proteobacteria,2UC6T@28211|Alphaproteobacteria,3JY4P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_3214091_1	1297865.APJD01000003_gene6142	0.0	1154.0	COG0038@1|root,COG0517@1|root,COG0038@2|Bacteria,COG0517@2|Bacteria,1MV4K@1224|Proteobacteria,2TTBG@28211|Alphaproteobacteria,3JWMQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Voltage gated chloride channel	-	-	-	ko:K03281	-	-	-	-	ko00000	2.A.49	-	-	CBS,Voltage_CLC
SX3_k127_3214091_13	1297865.APJD01000003_gene6141	1.644e-42	155.0	COG3653@1|root,COG3653@2|Bacteria,1MWWY@1224|Proteobacteria,2TSZZ@28211|Alphaproteobacteria,3JV0V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Amidohydrolase family	MA20_22865	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_3
SX3_k127_3235050_8	1297865.APJD01000049_gene5516	7.614e-42	153.0	COG1109@1|root,COG1109@2|Bacteria,1MU24@1224|Proteobacteria,2TQWH@28211|Alphaproteobacteria,3JS5S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate	glmM	-	5.4.2.10	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	-	R02060	RC00408	ko00000,ko00001,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
SX3_k127_3235050_2	1297865.APJD01000049_gene5515	2.763e-258	799.0	COG2223@1|root,COG2223@2|Bacteria,1MXAA@1224|Proteobacteria,2TS5Z@28211|Alphaproteobacteria,3JUAI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Major Facilitator Superfamily	fsr	-	-	ko:K08223	-	-	-	-	ko00000,ko02000	2.A.1.35	-	-	MFS_1
SX3_k127_3235050_4	1297865.APJD01000049_gene5514	9.602e-179	562.0	COG3637@1|root,COG3637@2|Bacteria,1MVJR@1224|Proteobacteria,2TY44@28211|Alphaproteobacteria,3JQM1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Outer membrane protein beta-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl
SX3_k127_3235050_3	1297865.APJD01000049_gene5513	9.247e-188	587.0	COG3637@1|root,COG3637@2|Bacteria,1MXGQ@1224|Proteobacteria,2TRQY@28211|Alphaproteobacteria,3JR72@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Outer membrane protein beta-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	OMP_b-brl
SX3_k127_3235050_5	1297865.APJD01000049_gene5512	7.17e-130	415.0	COG0625@1|root,COG0625@2|Bacteria,1REDI@1224|Proteobacteria,2TUGP@28211|Alphaproteobacteria,3JTRR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_05155	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_3235050_6	1297865.APJD01000049_gene5511	7.103e-99	323.0	COG0454@1|root,COG0456@2|Bacteria,1RH0C@1224|Proteobacteria,2U9B4@28211|Alphaproteobacteria,3JY26@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	phnO	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_3235050_9	1297865.APJD01000049_gene5510	2.883e-35	136.0	2AAYE@1|root,310BW@2|Bacteria,1N3TF@1224|Proteobacteria,2UE4Q@28211|Alphaproteobacteria,3K0AZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_05145	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3235050_1	1230476.C207_06095	2.355e-258	796.0	COG1932@1|root,COG1932@2|Bacteria,1MUB5@1224|Proteobacteria,2TSHT@28211|Alphaproteobacteria,3JR8V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine	serC	-	2.6.1.52	ko:K00831	ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230	M00020,M00124	R04173,R05085	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_5
SX3_k127_3235050_0	1230476.C207_06094	0.0	1014.0	COG0111@1|root,COG0111@2|Bacteria,1MU5Z@1224|Proteobacteria,2TR0F@28211|Alphaproteobacteria,3JV0H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	D-isomer specific 2-hydroxyacid dehydrogenase	serA	-	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C,ACT
SX3_k127_3235050_7	1297865.APJD01000049_gene5507	1.97e-67	229.0	COG3618@1|root,COG3618@2|Bacteria,1N2QM@1224|Proteobacteria,2TUVT@28211|Alphaproteobacteria,3JWRX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
SX3_k127_324127_0	1230476.C207_00343	1.334e-262	809.0	COG1290@1|root,COG2857@1|root,COG1290@2|Bacteria,COG2857@2|Bacteria,1MV97@1224|Proteobacteria,2TSZ3@28211|Alphaproteobacteria,3JUWH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis	petB	-	-	ko:K00410,ko:K00412	ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016	M00151,M00152	-	-	ko00000,ko00001,ko00002,ko03029	-	-	-	Cytochrom_B_C,Cytochrom_C1,Cytochrome_B
SX3_k127_324127_5	1230476.C207_00342	3.179e-109	355.0	COG0723@1|root,COG0723@2|Bacteria,1RAA2@1224|Proteobacteria,2TTT2@28211|Alphaproteobacteria,3JT8S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis	petA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.10.2.2	ko:K00411	ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016	M00151,M00152	-	-	ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,UCR_Fe-S_N
SX3_k127_324127_6	1297865.APJD01000007_gene1940	1.644e-98	322.0	COG0219@1|root,COG0219@2|Bacteria,1RCY4@1224|Proteobacteria,2U78W@28211|Alphaproteobacteria,3JYG0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide	trmL	-	2.1.1.207	ko:K03216	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	SpoU_methylase
SX3_k127_324127_2	1297865.APJD01000007_gene1939	1.56e-140	448.0	COG0602@1|root,COG0602@2|Bacteria,1MUJ2@1224|Proteobacteria,2TU1S@28211|Alphaproteobacteria,3JTHM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	queE	-	4.3.99.3	ko:K10026	ko00790,ko01100,map00790,map01100	-	R10002	RC02989	ko00000,ko00001,ko01000,ko03016	-	-	-	Fer4_14,Radical_SAM
SX3_k127_324127_7	1297865.APJD01000007_gene1938	1.749e-76	258.0	COG0720@1|root,COG0720@2|Bacteria,1RI4P@1224|Proteobacteria,2VG5E@28211|Alphaproteobacteria,3JYPG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	6-pyruvoyl tetrahydropterin synthase	queD	-	4.1.2.50,4.2.3.12	ko:K01737	ko00790,ko01100,map00790,map01100	M00842,M00843	R04286,R09959	RC01117,RC02846,RC02847	ko00000,ko00001,ko00002,ko01000,ko03016	-	-	-	PTPS
SX3_k127_324127_1	1297865.APJD01000007_gene1937	4.913e-207	647.0	COG0408@1|root,COG0408@2|Bacteria,1MWMF@1224|Proteobacteria,2TQNC@28211|Alphaproteobacteria,3JRIR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX	hemF	GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983	1.3.3.3	ko:K00228	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R03220	RC00884	ko00000,ko00001,ko00002,ko01000	-	-	-	Coprogen_oxidas
SX3_k127_324127_4	1126627.BAWE01000005_gene6326	6.004e-137	439.0	COG1011@1|root,COG1011@2|Bacteria,1PUN6@1224|Proteobacteria,2TY0G@28211|Alphaproteobacteria,3JU2Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HAD-hyrolase-like	-	-	-	ko:K07025	-	-	-	-	ko00000	-	-	-	HAD_2
SX3_k127_324127_9	1297865.APJD01000007_gene1935	2.37e-43	159.0	COG5475@1|root,COG5475@2|Bacteria,1N78K@1224|Proteobacteria,2UF86@28211|Alphaproteobacteria,3K0Z9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized small protein (DUF2158)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2158
SX3_k127_324127_3	1297865.APJD01000007_gene1934	4.351e-138	446.0	COG0730@1|root,COG0730@2|Bacteria,1MUJB@1224|Proteobacteria,2TRWP@28211|Alphaproteobacteria,3JT50@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfite exporter TauE/SafE	MA20_44620	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_324127_8	1297865.APJD01000007_gene1933	1.791e-71	241.0	COG0617@1|root,COG0617@2|Bacteria,1MVCS@1224|Proteobacteria,2TRPZ@28211|Alphaproteobacteria,3JR2K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Poly A polymerase head domain	pcnB	-	2.7.7.19,2.7.7.72	ko:K00970,ko:K00974	ko03013,ko03018,map03013,map03018	-	R09382,R09383,R09384,R09386	RC00078	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	PolyA_pol,PolyA_pol_RNAbd
SX3_k127_3241700_1	1297865.APJD01000052_gene1204	0.0	1014.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,3JSZE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	-	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_3241700_5	1297865.APJD01000052_gene1203	7.643e-175	566.0	COG1319@1|root,COG1319@2|Bacteria,1N4RF@1224|Proteobacteria,2U27S@28211|Alphaproteobacteria,3JT41@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD binding domain in molybdopterin dehydrogenase	-	-	1.2.5.3	ko:K03519	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	FAD_binding_5
SX3_k127_3241700_2	1297865.APJD01000052_gene1202	6.017e-263	813.0	COG2080@1|root,COG3427@1|root,COG2080@2|Bacteria,COG3427@2|Bacteria,1MXN3@1224|Proteobacteria,2TUK6@28211|Alphaproteobacteria,3JR1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Carbon monoxide dehydrogenase subunit G (CoxG)	-	-	1.2.5.3	ko:K03518	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	COXG,Fer2,Fer2_2
SX3_k127_3241700_8	1297865.APJD01000052_gene1201	8.367e-150	477.0	COG2188@1|root,COG2188@2|Bacteria,1MVPT@1224|Proteobacteria,2U13F@28211|Alphaproteobacteria,3JWJG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	UTRA domain	-	-	-	ko:K03710	-	-	-	-	ko00000,ko03000	-	-	-	GntR,UTRA
SX3_k127_3241700_3	1297865.APJD01000052_gene1200	7.764e-241	746.0	COG1171@1|root,COG1171@2|Bacteria,1QTY3@1224|Proteobacteria,2VEUV@28211|Alphaproteobacteria,3JT83@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	-	-	4.3.1.15	ko:K01751	-	-	-	-	ko00000,ko01000	-	-	-	PALP
SX3_k127_3241700_6	1297865.APJD01000052_gene1199	5.768e-167	525.0	COG1540@1|root,COG1540@2|Bacteria,1MUYV@1224|Proteobacteria,2TQUC@28211|Alphaproteobacteria,3JXFJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	LamB/YcsF family	ybgL	-	-	ko:K07160	-	-	-	-	ko00000	-	-	-	LamB_YcsF
SX3_k127_3241700_10	1297865.APJD01000052_gene1198	3.238e-127	410.0	COG2085@1|root,COG2085@2|Bacteria,1MXS0@1224|Proteobacteria,2TS1W@28211|Alphaproteobacteria,3JUCF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NADP oxidoreductase coenzyme F420-dependent	npdG	-	1.5.1.40	ko:K06988	-	-	-	-	ko00000,ko01000	-	-	-	F420_oxidored
SX3_k127_3241700_7	1297865.APJD01000052_gene1197	8.209e-159	501.0	COG1478@1|root,COG1478@2|Bacteria,1PQHN@1224|Proteobacteria,2TU1P@28211|Alphaproteobacteria,3JQVJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	F420-0:Gamma-glutamyl ligase	cofE	-	6.3.2.31,6.3.2.34	ko:K12234	ko00680,ko01120,map00680,map01120	M00378	R09399,R09400	RC00064,RC00090,RC00141	ko00000,ko00001,ko00002,ko01000	-	-	-	F420_ligase
SX3_k127_3241700_4	1297865.APJD01000052_gene1196	5.918e-199	623.0	COG0391@1|root,COG0391@2|Bacteria,1NK78@1224|Proteobacteria,2TUUA@28211|Alphaproteobacteria,3JX46@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein family UPF0052	cofD	-	2.7.8.28	ko:K11212	ko00680,ko01120,map00680,map01120	M00378	R09398	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	UPF0052
SX3_k127_3241700_9	1297865.APJD01000052_gene1195	1.13e-142	456.0	COG1920@1|root,COG1920@2|Bacteria,1RJPN@1224|Proteobacteria,2UAA7@28211|Alphaproteobacteria,3K03I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Guanylyltransferase that catalyzes the activation of 2- phospho-L-lactate (LP) as (2S)-lactyl-2-diphospho-5'-guanosine (LPPG), via the condensation of LP with GTP. Is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor	cofC	-	2.7.7.68	ko:K14941	ko00680,ko01120,map00680,map01120	M00378	R09397	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CofC
SX3_k127_3241700_0	1297865.APJD01000052_gene1194	0.0	1648.0	COG1060@1|root,COG1060@2|Bacteria,1MX50@1224|Proteobacteria,2TRX7@28211|Alphaproteobacteria,3JW8K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Radical SAM superfamily	fbiC	-	2.5.1.77	ko:K11779	ko00680,ko01120,map00680,map01120	M00378	R09396	RC01381,RC03002,RC03007	ko00000,ko00001,ko00002,ko01000	-	-	-	Radical_SAM
SX3_k127_3241700_11	1297865.APJD01000052_gene1193	1.343e-114	369.0	COG0031@1|root,COG0031@2|Bacteria,1QQKZ@1224|Proteobacteria,2TUZQ@28211|Alphaproteobacteria,3JQYB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	-	-	-	-	-	-	-	-	-	-	-	-	PALP
SX3_k127_3259191_3	1297865.APJD01000020_gene55	0.0	1040.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JQP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_3259191_13	1297865.APJD01000020_gene54	2.583e-141	451.0	COG2375@1|root,COG2375@2|Bacteria,1QMP4@1224|Proteobacteria,2TVPF@28211|Alphaproteobacteria,3JTHP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Siderophore-interacting FAD-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_9,SIP
SX3_k127_3259191_12	1297865.APJD01000020_gene53	1.253e-147	467.0	COG4122@1|root,COG4122@2|Bacteria,1R54R@1224|Proteobacteria,2U3D0@28211|Alphaproteobacteria,3JSTV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	O-methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24
SX3_k127_3259191_9	1297865.APJD01000020_gene52	2.702e-175	551.0	COG2207@1|root,COG2207@2|Bacteria,1NETZ@1224|Proteobacteria,2TU4R@28211|Alphaproteobacteria,3JR9J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,HTH_18
SX3_k127_3259191_4	1297865.APJD01000020_gene51	1.297e-314	966.0	COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,3JRAZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctA family	MA20_15045	-	-	ko:K07793	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctA
SX3_k127_3259191_16	1297865.APJD01000020_gene50	2.165e-91	303.0	2C846@1|root,32T61@2|Bacteria,1RCJG@1224|Proteobacteria,2U6NF@28211|Alphaproteobacteria,3JYC8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctB family	-	-	-	ko:K07794	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctB
SX3_k127_3259191_8	1297865.APJD01000020_gene49	2.869e-194	608.0	COG3181@1|root,COG3181@2|Bacteria,1MXEX@1224|Proteobacteria,2TTSX@28211|Alphaproteobacteria,3JR0A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	MA20_15055	-	-	ko:K07795	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctC
SX3_k127_3259191_0	1297865.APJD01000020_gene48	0.0	1497.0	COG4772@1|root,COG4772@2|Bacteria,1MUIH@1224|Proteobacteria,2TRPJ@28211|Alphaproteobacteria,3JRAT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB-dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_3259191_19	1230476.C207_04265	9.572e-65	225.0	2CFN6@1|root,2ZE22@2|Bacteria,1N14N@1224|Proteobacteria,2UEHD@28211|Alphaproteobacteria,3K0U4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3259191_6	1297865.APJD01000020_gene46	1.783e-230	714.0	COG2042@1|root,COG3376@2|Bacteria,1MUYH@1224|Proteobacteria,2TRMZ@28211|Alphaproteobacteria,3JUUV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the NiCoT transporter (TC 2.A.52) family	hoxN	-	-	ko:K07241	-	-	-	-	ko00000,ko02000	2.A.52.1	-	-	NicO
SX3_k127_3259191_11	1297865.APJD01000020_gene45	1.435e-162	512.0	COG5266@1|root,COG5266@2|Bacteria,1R7XS@1224|Proteobacteria,2UGU8@28211|Alphaproteobacteria,3K34C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Domain of unknown function (DUF4198)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4198
SX3_k127_3259191_1	1297865.APJD01000020_gene44	0.0	1294.0	COG1629@1|root,COG4771@2|Bacteria,1QV6G@1224|Proteobacteria,2TWBK@28211|Alphaproteobacteria,3K2VJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
SX3_k127_3259191_5	1297865.APJD01000020_gene43	7.722e-244	755.0	COG0665@1|root,COG0665@2|Bacteria,1R652@1224|Proteobacteria,2TV72@28211|Alphaproteobacteria,3JWWU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	solA	-	-	-	-	-	-	-	-	-	-	-	DAO
SX3_k127_3259191_18	1297865.APJD01000020_gene42	5.607e-70	238.0	COG0784@1|root,COG0784@2|Bacteria,1N0E7@1224|Proteobacteria,2UC0P@28211|Alphaproteobacteria,3K70Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_3259191_2	1297865.APJD01000020_gene41	0.0	1289.0	COG2202@1|root,COG2203@1|root,COG3920@1|root,COG2202@2|Bacteria,COG2203@2|Bacteria,COG3920@2|Bacteria,1NWNJ@1224|Proteobacteria,2TWY0@28211|Alphaproteobacteria,3JXXR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HWE histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	GAF,HWE_HK,PAS,PAS_3,PAS_4
SX3_k127_3259191_21	1230476.C207_04257	5.164e-40	150.0	2C6FU@1|root,2ZZG4@2|Bacteria,1N084@1224|Proteobacteria,2UCQM@28211|Alphaproteobacteria,3K05W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_36710	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3259191_22	1297865.APJD01000020_gene39	5.31e-38	147.0	2BJ87@1|root,32DHQ@2|Bacteria,1N0FC@1224|Proteobacteria,2UDW8@28211|Alphaproteobacteria,3K05M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3259191_15	1230476.C207_04255	2.116e-102	335.0	COG1846@1|root,COG1846@2|Bacteria,1RA1V@1224|Proteobacteria,2U5W6@28211|Alphaproteobacteria,3JS7Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Winged helix DNA-binding domain	mucS	-	-	-	-	-	-	-	-	-	-	-	HTH_27
SX3_k127_3259191_17	1297865.APJD01000020_gene37	3.371e-90	298.0	2D2F3@1|root,32TCM@2|Bacteria,1NECH@1224|Proteobacteria,2U5FZ@28211|Alphaproteobacteria,3JYBV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_36695	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3259191_7	1297865.APJD01000020_gene36	4.615e-229	711.0	COG0113@1|root,COG0113@2|Bacteria,1MWMW@1224|Proteobacteria,2TS3F@28211|Alphaproteobacteria,3JRDV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the ALAD family	hemB	GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.2.1.24	ko:K01698	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R00036	RC00918,RC01781	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ALAD
SX3_k127_3259191_14	1297865.APJD01000020_gene35	4.046e-113	366.0	COG1714@1|root,COG1714@2|Bacteria,1P9TI@1224|Proteobacteria,2TRIS@28211|Alphaproteobacteria,3JQUB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	RDD family	MA20_36685	-	-	-	-	-	-	-	-	-	-	-	RDD
SX3_k127_3259191_10	1230476.C207_04250	1.724e-171	538.0	COG2935@1|root,COG2935@2|Bacteria,1MW62@1224|Proteobacteria,2TQY8@28211|Alphaproteobacteria,3JUT3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate	ate	GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575	2.3.2.29	ko:K21420	-	-	R11547,R11548	RC00064	ko00000,ko01000	-	-	-	ATE_C,ATE_N
SX3_k127_3259191_20	1297865.APJD01000020_gene33	2.142e-62	215.0	COG1914@1|root,COG1914@2|Bacteria,1MW6X@1224|Proteobacteria,2TUTC@28211|Alphaproteobacteria,3JQY1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	H( )-stimulated, divalent metal cation uptake system	mntH	GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0042221,GO:0050896,GO:0051716,GO:0070887,GO:0071241,GO:0071248,GO:0071281	-	ko:K03322	-	-	-	-	ko00000,ko02000	2.A.55.2.6,2.A.55.3	-	-	Nramp
SX3_k127_3265159_11	1297865.APJD01000007_gene2026	1.348e-66	227.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JSME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_3265159_6	1297865.APJD01000007_gene2025	1.437e-144	461.0	COG4122@1|root,COG4122@2|Bacteria,1N57D@1224|Proteobacteria,2TT8Y@28211|Alphaproteobacteria,3JTNU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	O-methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24,Methyltransf_3
SX3_k127_3265159_3	1297865.APJD01000007_gene2024	2.447e-272	839.0	COG3182@1|root,COG3182@2|Bacteria,1QWJM@1224|Proteobacteria,2TWZQ@28211|Alphaproteobacteria,3JV5H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PepSY-associated TM region	-	-	1.8.1.2	ko:K00380	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00176	R00858	RC00065	ko00000,ko00001,ko00002,ko01000	-	-	-	PepSY_TM
SX3_k127_3265159_8	1297865.APJD01000007_gene2023	8.67e-113	364.0	COG0537@1|root,COG0537@2|Bacteria,1N78Q@1224|Proteobacteria,2UA34@28211|Alphaproteobacteria,3JVP0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	FG	Domain of unknown function (DUF4269)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4269
SX3_k127_3265159_0	1297865.APJD01000007_gene2022	0.0	1120.0	COG2224@1|root,COG2224@2|Bacteria,1MWIF@1224|Proteobacteria,2TU0Q@28211|Alphaproteobacteria,3JTR3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Isocitrate lyase	aceA	-	4.1.3.1	ko:K01637	ko00630,ko01100,ko01110,ko01120,ko01200,map00630,map01100,map01110,map01120,map01200	M00012	R00479	RC00311,RC00313	ko00000,ko00001,ko00002,ko01000	-	-	-	ICL
SX3_k127_3265159_1	1230476.C207_00436	8.944e-310	949.0	COG1396@1|root,COG3800@1|root,COG1396@2|Bacteria,COG3800@2|Bacteria,1MU50@1224|Proteobacteria,2TRKE@28211|Alphaproteobacteria,3JWY3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Predicted transcriptional regulator (DUF2083)	-	-	-	ko:K07110	-	-	-	-	ko00000,ko03000	-	-	-	DUF2083,HTH_19,HTH_3,HTH_31,Peptidase_M78
SX3_k127_3265159_4	1297865.APJD01000007_gene2020	6.614e-269	828.0	COG0111@1|root,COG0111@2|Bacteria,1MU5Z@1224|Proteobacteria,2TR0F@28211|Alphaproteobacteria,3JRRC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	MA20_21575	GO:0003674,GO:0003824,GO:0004617,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016491,GO:0016597,GO:0016614,GO:0016616,GO:0019752,GO:0031406,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0047545,GO:0055114,GO:0070905,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C,HAD
SX3_k127_3265159_5	1297865.APJD01000007_gene2019	1.533e-205	642.0	COG0009@1|root,COG0009@2|Bacteria,1MVPM@1224|Proteobacteria,2TRIM@28211|Alphaproteobacteria,3JU6E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine	sua5	GO:0000049,GO:0000166,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363	2.7.7.87	ko:K07566	-	-	R10463	RC00745	ko00000,ko01000,ko03009,ko03016	-	-	-	SUA5,Sua5_yciO_yrdC
SX3_k127_3265159_2	1297865.APJD01000007_gene2018	1.098e-304	936.0	COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2TRYI@28211|Alphaproteobacteria,3JT3S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD linked oxidases, C-terminal domain	MA20_42035	GO:0000166,GO:0003674,GO:0003824,GO:0004457,GO:0004458,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006089,GO:0006091,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016053,GO:0016491,GO:0016614,GO:0016898,GO:0019249,GO:0019516,GO:0019752,GO:0022900,GO:0022904,GO:0030447,GO:0032787,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046394,GO:0048037,GO:0050660,GO:0050662,GO:0051990,GO:0055114,GO:0071704,GO:0071949,GO:0072330,GO:0097159,GO:0099615,GO:1901265,GO:1901363,GO:1901576,GO:1901615,GO:1901617	1.1.2.4	ko:K00102	ko00620,map00620	-	R00197	RC00044	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
SX3_k127_3265159_9	1297865.APJD01000007_gene2017	2.719e-94	311.0	COG0454@1|root,COG0456@2|Bacteria,1RA6D@1224|Proteobacteria,2UC27@28211|Alphaproteobacteria,3JYBK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_3265159_7	1297865.APJD01000007_gene2016	6.028e-118	379.0	COG0494@1|root,COG0494@2|Bacteria,1MWBQ@1224|Proteobacteria,2TVWJ@28211|Alphaproteobacteria,3JSVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	NTP pyrophosphohydrolases including oxidative damage repair enzymes	MA20_42045	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_3265159_10	1297865.APJD01000007_gene2015	7.506e-71	240.0	2E560@1|root,32ZYT@2|Bacteria,1RAE3@1224|Proteobacteria,2U5G6@28211|Alphaproteobacteria,3JY3P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_01460	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3281533_2	426114.THI_2275	1.115e-259	819.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2W8XA@28216|Betaproteobacteria,1KPEJ@119065|unclassified Burkholderiales	28216|Betaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
SX3_k127_3281533_39	1245469.S58_25820	2.05e-25	107.0	COG1814@1|root,COG1814@2|Bacteria,1MUZE@1224|Proteobacteria,2TT6M@28211|Alphaproteobacteria,3JWU2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	VIT family	-	-	-	-	-	-	-	-	-	-	-	-	VIT1
SX3_k127_3281533_41	883080.HMPREF9697_00207	5.444e-10	63.0	COG1814@1|root,COG1814@2|Bacteria,1MUZE@1224|Proteobacteria,2TT6M@28211|Alphaproteobacteria,3JWU2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	VIT family	-	-	-	-	-	-	-	-	-	-	-	-	VIT1
SX3_k127_3281533_31	388051.AUFE01000008_gene1565	1.068e-55	196.0	COG4126@1|root,COG4126@2|Bacteria,1MVNB@1224|Proteobacteria,2VKM5@28216|Betaproteobacteria	28216|Betaproteobacteria	E	Asp Glu hydantoin racemase	-	-	-	-	-	-	-	-	-	-	-	-	Asp_Glu_race
SX3_k127_3281533_30	381666.H16_A3073	2.149e-56	199.0	COG4126@1|root,COG4126@2|Bacteria,1MVNB@1224|Proteobacteria,2VIXF@28216|Betaproteobacteria,1KC9U@119060|Burkholderiaceae	28216|Betaproteobacteria	E	Hydantoin racemase	-	-	-	-	-	-	-	-	-	-	-	-	Asp_Glu_race
SX3_k127_3281533_26	1502851.FG93_01824	1.568e-72	252.0	COG1802@1|root,COG1802@2|Bacteria,1N7GE@1224|Proteobacteria,2U49F@28211|Alphaproteobacteria,3JX9F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_3281533_9	1502851.FG93_01827	2.986e-219	689.0	COG2271@1|root,COG2271@2|Bacteria,1MVPS@1224|Proteobacteria,2TTHW@28211|Alphaproteobacteria,3JT33@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PFAM Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_3281533_17	935557.ATYB01000007_gene1230	3.079e-108	356.0	COG3473@1|root,COG3473@2|Bacteria,1MU9Z@1224|Proteobacteria,2TYFG@28211|Alphaproteobacteria,4BEZ2@82115|Rhizobiaceae	28211|Alphaproteobacteria	Q	Asp/Glu/Hydantoin racemase	-	-	5.2.1.1	ko:K01799	ko00650,ko00760,ko01120,map00650,map00760,map01120	M00622	R01087	RC00448	ko00000,ko00001,ko00002,ko01000	-	-	-	Asp_Glu_race
SX3_k127_3281533_4	1502851.FG93_01822	1.307e-257	802.0	COG0044@1|root,COG0044@2|Bacteria,1MW10@1224|Proteobacteria,2TSQH@28211|Alphaproteobacteria,3JTGE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Function of homologous gene experimentally demonstrated in an other organism	hyuA	-	3.5.2.2	ko:K01464	ko00240,ko00410,ko00770,ko00983,ko01100,map00240,map00410,map00770,map00983,map01100	M00046	R02269,R03055,R08227	RC00632,RC00680	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Amidohydro_1,Urease_alpha
SX3_k127_3281533_35	485913.Krac_9579	2.444e-41	159.0	COG4275@1|root,COG4275@2|Bacteria	2|Bacteria	S	Chromate resistance exported protein	chrB	-	-	-	-	-	-	-	-	-	-	-	Chrome_Resist
SX3_k127_3281533_11	666684.AfiDRAFT_0913	3.426e-201	640.0	COG0477@1|root,COG0477@2|Bacteria,1QWSX@1224|Proteobacteria,2TX4I@28211|Alphaproteobacteria,3JQPJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	MA20_07500	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_3281533_18	1040989.AWZU01000012_gene1302	1.245e-107	360.0	COG0845@1|root,COG0845@2|Bacteria,1R6JG@1224|Proteobacteria,2TU2R@28211|Alphaproteobacteria,3JXAG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3281533_0	1040989.AWZU01000012_gene1301	0.0	1485.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JVS5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	AcrB/AcrD/AcrF family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
SX3_k127_3281533_43	1298867.AUES01000001_gene1634	5.855e-08	57.0	29DUN@1|root,300SI@2|Bacteria,1NQBS@1224|Proteobacteria,2UJBU@28211|Alphaproteobacteria,3K1R0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3281533_32	196490.AUEZ01000099_gene4932	1.926e-47	173.0	COG0239@1|root,COG0239@2|Bacteria,1MZNH@1224|Proteobacteria,2UBUP@28211|Alphaproteobacteria,3K68P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	CrcB-like protein, Camphor Resistance (CrcB)	crcB	-	-	ko:K06199	-	-	-	-	ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3	-	-	CRCB
SX3_k127_3281533_25	1211115.ALIQ01000214_gene137	2.701e-77	269.0	COG0588@1|root,COG0588@2|Bacteria,1MUVE@1224|Proteobacteria,2TSQ0@28211|Alphaproteobacteria,3NAUX@45404|Beijerinckiaceae	28211|Alphaproteobacteria	F	phosphoglycerate mutase activity	gpmA	GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031	5.4.2.11	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	His_Phos_1
SX3_k127_3281533_34	666684.AfiDRAFT_1559	6.778e-42	162.0	COG2365@1|root,COG2365@2|Bacteria,1RJ2P@1224|Proteobacteria,2UB4E@28211|Alphaproteobacteria,3K4SQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Tyrosine phosphatase family	-	-	-	-	-	-	-	-	-	-	-	-	Y_phosphatase3
SX3_k127_3281533_36	371731.Rsw2DRAFT_2052	1.146e-37	149.0	COG0671@1|root,COG0671@2|Bacteria,1R56P@1224|Proteobacteria,2UGGU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Acid phosphatase homologues	-	-	3.6.1.27	ko:K19302	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	PAP2
SX3_k127_3281533_16	670307.HYPDE_40568	3.733e-117	383.0	COG4280@1|root,COG4280@2|Bacteria,1R6ER@1224|Proteobacteria,2U4XX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterized protein family UPF0016	-	-	-	-	-	-	-	-	-	-	-	-	OFeT_1,UPF0016
SX3_k127_3281533_38	1230476.C207_04576	8.549e-28	114.0	COG2199@1|root,COG3706@2|Bacteria,1NAVK@1224|Proteobacteria,2UF4H@28211|Alphaproteobacteria,3K0YM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	PilZ domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_3281533_20	1297865.APJD01000017_gene4243	2.431e-100	334.0	COG4705@1|root,COG4705@2|Bacteria,1MVMJ@1224|Proteobacteria,2TS5R@28211|Alphaproteobacteria,3JQKX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF347
SX3_k127_3281533_14	441620.Mpop_4103	1.959e-137	443.0	COG4705@1|root,COG4705@2|Bacteria,1MVMJ@1224|Proteobacteria,2TS5R@28211|Alphaproteobacteria,1JRTB@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF347
SX3_k127_3281533_37	395494.Galf_0915	5.694e-33	133.0	COG3212@1|root,COG3212@2|Bacteria,1NCU3@1224|Proteobacteria,2W4PZ@28216|Betaproteobacteria	28216|Betaproteobacteria	S	Peptidase propeptide and YPEB domain	-	-	-	-	-	-	-	-	-	-	-	-	PepSY
SX3_k127_3281533_12	1096546.WYO_3130	7.205e-169	544.0	COG5002@1|root,COG5002@2|Bacteria,1QTSA@1224|Proteobacteria,2TXSP@28211|Alphaproteobacteria,1JSDK@119045|Methylobacteriaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	2.7.13.3	ko:K02484,ko:K07645	ko02020,ko02024,map02020,map02024	M00453	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	2CSK_N,HATPase_c,HisKA
SX3_k127_3281533_21	1096546.WYO_3131	1.544e-99	328.0	COG0745@1|root,COG0745@2|Bacteria,1N0YI@1224|Proteobacteria,2VEXA@28211|Alphaproteobacteria,1JRQH@119045|Methylobacteriaceae	28211|Alphaproteobacteria	KT	Transcriptional regulatory protein, C terminal	-	-	-	ko:K07666	ko02020,ko02024,map02020,map02024	M00453	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_3281533_19	504832.OCAR_7639	4.373e-101	336.0	COG2771@1|root,COG2771@2|Bacteria,1RE9I@1224|Proteobacteria,2TXIA@28211|Alphaproteobacteria,3K6WM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Autoinducer binding domain	-	-	-	ko:K18098	ko02024,map02024	-	-	-	ko00000,ko00001,ko03000	-	-	-	Autoind_bind,GerE
SX3_k127_3281533_1	323097.Nham_4527	0.0	1170.0	COG3843@1|root,COG3843@2|Bacteria,1N6J7@1224|Proteobacteria,2TXB7@28211|Alphaproteobacteria,3K6CH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Relaxase/Mobilisation nuclease domain	-	-	-	-	-	-	-	-	-	-	-	-	Relaxase
SX3_k127_3281533_27	323097.Nham_4526	5.143e-72	245.0	2C8PF@1|root,346NF@2|Bacteria,1RE7H@1224|Proteobacteria,2U91H@28211|Alphaproteobacteria,3JYXH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3281533_13	883080.HMPREF9697_03965	6.427e-144	461.0	COG1192@1|root,COG1192@2|Bacteria,1R8ZH@1224|Proteobacteria,2U2C1@28211|Alphaproteobacteria,3JUQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	VirC1 protein	parA1	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31,VirC1
SX3_k127_3281533_24	883080.HMPREF9697_03964	4.083e-79	273.0	2AJWX@1|root,31AJV@2|Bacteria,1NWRF@1224|Proteobacteria,2USPK@28211|Alphaproteobacteria,3K43D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3281533_3	883080.HMPREF9697_03963	9.103e-259	801.0	COG1132@1|root,COG1132@2|Bacteria,1QU9H@1224|Proteobacteria,2U2R5@28211|Alphaproteobacteria,3JXAN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Replication protein C N-terminal domain	-	-	-	ko:K18996	-	-	-	-	ko00000,ko03032	-	-	-	RP-C,RP-C_C
SX3_k127_3281533_40	504832.OCAR_7643	1.773e-12	67.0	COG1132@1|root,COG1132@2|Bacteria,1QU9H@1224|Proteobacteria,2U2R5@28211|Alphaproteobacteria,3JXAN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Replication protein C N-terminal domain	-	-	-	ko:K18996	-	-	-	-	ko00000,ko03032	-	-	-	RP-C,RP-C_C
SX3_k127_3281533_29	883080.HMPREF9697_03962	7.49e-58	203.0	2AK4A@1|root,31AU4@2|Bacteria,1NX8P@1224|Proteobacteria,2UTP4@28211|Alphaproteobacteria,3K4DW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
SX3_k127_3281533_22	883080.HMPREF9697_03961	1.057e-98	323.0	COG3636@1|root,COG3636@2|Bacteria,1RGA4@1224|Proteobacteria,2U8EH@28211|Alphaproteobacteria,3JZ3Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
SX3_k127_3281533_28	883080.HMPREF9697_03960	2.137e-64	229.0	COG0629@1|root,COG0629@2|Bacteria,1RDCZ@1224|Proteobacteria,2UERA@28211|Alphaproteobacteria,3JZB4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Single-strand binding protein family	-	-	-	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	-	-	-	ko00000,ko00001,ko03029,ko03032,ko03400	-	-	-	SSB
SX3_k127_3281533_6	883080.HMPREF9697_03958	1.014e-255	790.0	COG0640@1|root,COG0640@2|Bacteria,1MX7U@1224|Proteobacteria,2TSJX@28211|Alphaproteobacteria,3JSBU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Replication protein C C-terminal region	repC	-	-	ko:K18996	-	-	-	-	ko00000,ko03032	-	-	-	RP-C,RP-C_C
SX3_k127_3281533_10	883080.HMPREF9697_03957	4.515e-206	643.0	COG1475@1|root,COG1475@2|Bacteria,1QAFW@1224|Proteobacteria,2U1MZ@28211|Alphaproteobacteria,3JUKW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	RepB plasmid partitioning protein	-	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc,RepB
SX3_k127_3281533_5	883080.HMPREF9697_03956	1.454e-257	794.0	COG1192@1|root,COG1192@2|Bacteria,1MVJU@1224|Proteobacteria,2TRYQ@28211|Alphaproteobacteria,3JV41@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	AAA domain	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31,MerR
SX3_k127_3281533_7	883080.HMPREF9697_03955	6.4e-253	782.0	COG0582@1|root,COG0582@2|Bacteria,1MVQC@1224|Proteobacteria,2TR1A@28211|Alphaproteobacteria,3JXVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Phage integrase family	intA	-	-	-	-	-	-	-	-	-	-	-	Phage_integrase
SX3_k127_3281533_8	883080.HMPREF9697_03954	9.766e-249	767.0	2E2KC@1|root,32XPP@2|Bacteria,1R4ZI@1224|Proteobacteria,2TVMF@28211|Alphaproteobacteria,3JTR1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Evidence 4 Homologs of previously reported genes of	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3281533_23	883080.HMPREF9697_03953	5.044e-88	295.0	COG1487@1|root,COG1487@2|Bacteria,1RIB5@1224|Proteobacteria,2VGZ3@28211|Alphaproteobacteria,3JZA4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Toxic component of a toxin-antitoxin (TA) module. An RNase	vapC	-	-	ko:K07062	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	PIN
SX3_k127_3281533_33	883080.HMPREF9697_03952	2.338e-47	170.0	COG2161@1|root,COG2161@2|Bacteria,1NBSZ@1224|Proteobacteria,2UDZ3@28211|Alphaproteobacteria,3K02N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Antitoxin component of a toxin-antitoxin (TA) module	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
SX3_k127_3285552_4	1304275.C41B8_06427	1.026e-92	311.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1S1GP@1236|Gammaproteobacteria	1236|Gammaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
SX3_k127_3285552_7	1304275.C41B8_14635	8.549e-46	186.0	COG0845@1|root,COG0845@2|Bacteria,1RHR5@1224|Proteobacteria,1SBZ4@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	-	-	-	-	-	-	-	-	-	HlyD_3,HlyD_D23
SX3_k127_3285552_9	1297863.APJF01000028_gene1390	3.033e-16	82.0	COG4705@1|root,COG4705@2|Bacteria,1MVMJ@1224|Proteobacteria,2TS5R@28211|Alphaproteobacteria,3JQKX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF347
SX3_k127_3285552_10	266265.Bxe_A3455	3.109e-09	62.0	COG4705@1|root,COG4705@2|Bacteria,1MVMJ@1224|Proteobacteria,2VJTM@28216|Betaproteobacteria,1K18G@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF347
SX3_k127_3285552_8	441620.Mpop_4103	1.01e-16	94.0	COG4705@1|root,COG4705@2|Bacteria,1MVMJ@1224|Proteobacteria,2TS5R@28211|Alphaproteobacteria,1JRTB@119045|Methylobacteriaceae	28211|Alphaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF347
SX3_k127_3285552_11	1041522.MCOL_V219446	6.724e-08	56.0	COG4705@1|root,COG4705@2|Bacteria,2HWSK@201174|Actinobacteria,2339E@1762|Mycobacteriaceae	201174|Actinobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF347
SX3_k127_3285552_6	883080.HMPREF9697_04044	2.852e-46	169.0	COG2199@1|root,COG3706@2|Bacteria,1R1XK@1224|Proteobacteria,2TZ6S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	PilZ domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_3285552_5	883080.HMPREF9697_04043	6.807e-78	263.0	COG4705@1|root,COG4705@2|Bacteria,1RFXY@1224|Proteobacteria,2U91K@28211|Alphaproteobacteria,3JYWY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3285552_2	1230476.C207_04312	4.647e-112	374.0	COG4705@1|root,COG4705@2|Bacteria,1MVMJ@1224|Proteobacteria,2TS5R@28211|Alphaproteobacteria,3JQW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Repeat of Unknown Function (DUF347)	-	-	-	-	-	-	-	-	-	-	-	-	DUF347
SX3_k127_3285552_0	596151.DesfrDRAFT_2110	4.64e-115	387.0	COG0642@1|root,COG2205@2|Bacteria,1MW8M@1224|Proteobacteria,42SW9@68525|delta/epsilon subdivisions,2WPN3@28221|Deltaproteobacteria,2M9KZ@213115|Desulfovibrionales	28221|Deltaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c
SX3_k127_3285552_1	1304878.AUGD01000014_gene3052	9.003e-113	369.0	COG0745@1|root,COG0745@2|Bacteria,1MU67@1224|Proteobacteria,2TRTZ@28211|Alphaproteobacteria,3JT22@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	transcriptional regulator, winged helix family	copR	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_3285552_3	883080.HMPREF9697_04023	1.367e-106	347.0	COG0577@1|root,COG0577@2|Bacteria,1PRGU@1224|Proteobacteria,2U2BA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	FtsX-like permease family	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
SX3_k127_3295863_1	1297865.APJD01000035_gene5484	0.0	1167.0	COG0249@1|root,COG0249@2|Bacteria,1MUGX@1224|Proteobacteria,2TQRR@28211|Alphaproteobacteria,3JT7Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	mutS	GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391	-	ko:K03555	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
SX3_k127_3295863_5	1297865.APJD01000035_gene5483	2.73e-161	511.0	2BKDV@1|root,32EUJ@2|Bacteria,1N9UU@1224|Proteobacteria,2TSMK@28211|Alphaproteobacteria,3JT65@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3295863_10	1297865.APJD01000035_gene5482	4.437e-40	148.0	COG1765@1|root,COG1765@2|Bacteria,1R9XU@1224|Proteobacteria,2U6E4@28211|Alphaproteobacteria,3JSDI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	OsmC-like protein	MA20_23315	-	-	-	-	-	-	-	-	-	-	-	OsmC
SX3_k127_3295863_9	1297865.APJD01000035_gene5482	2.22e-50	180.0	COG1765@1|root,COG1765@2|Bacteria,1R9XU@1224|Proteobacteria,2U6E4@28211|Alphaproteobacteria,3JSDI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	OsmC-like protein	MA20_23315	-	-	-	-	-	-	-	-	-	-	-	OsmC
SX3_k127_3295863_6	1297865.APJD01000035_gene5481	1.333e-160	516.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2TRNE@28211|Alphaproteobacteria,3JR1K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	MA20_23320	-	-	ko:K15555	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.17.2	-	-	ABC_tran
SX3_k127_3295863_4	1297865.APJD01000035_gene5480	1.186e-173	546.0	COG0600@1|root,COG0600@2|Bacteria,1R5NP@1224|Proteobacteria,2VETS@28211|Alphaproteobacteria,3JSMJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_23325	-	-	ko:K15554	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	BPD_transp_1
SX3_k127_3295863_3	1297865.APJD01000035_gene5479	4.704e-203	633.0	COG0715@1|root,COG0715@2|Bacteria,1MV9S@1224|Proteobacteria,2TU4J@28211|Alphaproteobacteria,3JSKG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ABC transporter, phosphonate, periplasmic substrate-binding protein	MA20_23330	-	-	ko:K15553	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	NMT1
SX3_k127_3295863_0	1297865.APJD01000035_gene5478	0.0	1855.0	COG2844@1|root,COG2844@2|Bacteria,1MV54@1224|Proteobacteria,2TSV0@28211|Alphaproteobacteria,3JV2M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen	glnD	GO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141	2.7.7.59	ko:K00990	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	-	-	-	ACT,GlnD_UR_UTase,GlnE,HD,NTP_transf_2
SX3_k127_3295863_11	224911.27354970	2.72e-06	54.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_3295863_7	1297865.APJD01000035_gene5477	3.158e-111	363.0	COG0350@1|root,COG0350@2|Bacteria,1N2YQ@1224|Proteobacteria,2TRRN@28211|Alphaproteobacteria,3JVY5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	6-O-methylguanine DNA methyltransferase, DNA binding domain	ogt	-	2.1.1.63	ko:K00567	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_binding_1,Methyltransf_1N
SX3_k127_3295863_8	1297865.APJD01000035_gene5476	1.472e-67	230.0	COG3759@1|root,COG3759@2|Bacteria,1MZ4F@1224|Proteobacteria,2UBW9@28211|Alphaproteobacteria,3JYZP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1304)	MA20_23345	-	-	ko:K08987	-	-	-	-	ko00000	-	-	-	DUF1304
SX3_k127_3295863_2	1297865.APJD01000035_gene5475	1.331e-265	819.0	COG0683@1|root,COG0683@2|Bacteria,1MU4V@1224|Proteobacteria,2TV7X@28211|Alphaproteobacteria,3JQUF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_23350	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_3299192_4	1297865.APJD01000014_gene617	3.998e-212	661.0	COG4591@1|root,COG4591@2|Bacteria,1MVV7@1224|Proteobacteria,2U46C@28211|Alphaproteobacteria,3JXZX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	MacB-like periplasmic core domain	-	-	-	ko:K09808	ko02010,map02010	M00255	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.125	-	-	FtsX,MacB_PCD
SX3_k127_3299192_2	1297865.APJD01000014_gene616	0.0	1073.0	COG1132@1|root,COG1132@2|Bacteria,1MXRE@1224|Proteobacteria,2U0R9@28211|Alphaproteobacteria,3JXJ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter	-	-	-	-	-	-	-	-	-	-	-	-	ABC_membrane,ABC_tran
SX3_k127_3299192_12	1297865.APJD01000014_gene615	1.375e-42	161.0	2AFME@1|root,315NQ@2|Bacteria,1NE70@1224|Proteobacteria,2UHK5@28211|Alphaproteobacteria,3K1BT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3299192_13	1297865.APJD01000014_gene614	5.513e-29	118.0	2AEV3@1|root,314SI@2|Bacteria,1NBA5@1224|Proteobacteria,2UF61@28211|Alphaproteobacteria,3K1DD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3299192_7	1297865.APJD01000014_gene613	1.701e-197	617.0	COG0596@1|root,COG0596@2|Bacteria,1MUSF@1224|Proteobacteria,2TSK5@28211|Alphaproteobacteria,3JS6T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	dhmA	-	3.8.1.5	ko:K01563	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05284,R05367,R05368,R05369,R05370,R07669,R07670	RC01317,RC01340,RC01341,RC02013	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
SX3_k127_3299192_10	1297865.APJD01000014_gene612	1.854e-139	445.0	COG1024@1|root,COG1024@2|Bacteria,1N2V7@1224|Proteobacteria,2U4VQ@28211|Alphaproteobacteria,3JXKI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_3299192_6	1297865.APJD01000014_gene611	1.497e-202	633.0	COG0604@1|root,COG0604@2|Bacteria,1MWRK@1224|Proteobacteria,2TSPW@28211|Alphaproteobacteria,3JVTH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	-	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_3299192_9	1297865.APJD01000014_gene610	4.565e-160	507.0	COG1291@1|root,COG1291@2|Bacteria,1MXK3@1224|Proteobacteria,2TTXY@28211|Alphaproteobacteria,3JRM7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	MotA/TolQ/ExbB proton channel family	motA	-	-	ko:K02556	ko02020,ko02030,ko02040,map02020,map02030,map02040	-	-	-	ko00000,ko00001,ko02000,ko02035	1.A.30.1	-	-	MotA_ExbB
SX3_k127_3299192_8	1297865.APJD01000014_gene609	1.384e-174	548.0	COG1360@1|root,COG1360@2|Bacteria,1MW1Y@1224|Proteobacteria,2TTW2@28211|Alphaproteobacteria,3JTBX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	PFAM OmpA MotB domain protein	motB	-	-	ko:K02557	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02000,ko02035	1.A.30.1	-	-	MotB_plug,OmpA
SX3_k127_3299192_0	1297865.APJD01000014_gene608	0.0	1252.0	COG3158@1|root,COG3158@2|Bacteria,1MUVH@1224|Proteobacteria,2TRVJ@28211|Alphaproteobacteria,3JQUM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Transport of potassium into the cell	kup	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662	-	ko:K03549	-	-	-	-	ko00000,ko02000	2.A.72	-	-	K_trans
SX3_k127_3299192_1	1297865.APJD01000014_gene607	0.0	1230.0	COG3158@1|root,COG3158@2|Bacteria,1MUVH@1224|Proteobacteria,2TRVJ@28211|Alphaproteobacteria,3JQUM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Transport of potassium into the cell	kup	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662	-	ko:K03549	-	-	-	-	ko00000,ko02000	2.A.72	-	-	K_trans
SX3_k127_3299192_3	571166.KI421509_gene1167	3.157e-266	855.0	COG2114@1|root,COG3899@1|root,COG2114@2|Bacteria,COG3899@2|Bacteria,1MUDT@1224|Proteobacteria,2TQVN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	T	Adenylate and Guanylate cyclase catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	AAA_16,Abhydrolase_1,Guanylate_cyc,TPR_12,TPR_4
SX3_k127_3299192_11	1297865.APJD01000014_gene606	9.809e-63	222.0	COG0607@1|root,COG0607@2|Bacteria,1N2R7@1224|Proteobacteria,2U9G7@28211|Alphaproteobacteria,3JZCR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	MA20_26415	-	-	-	-	-	-	-	-	-	-	-	Rhodanese
SX3_k127_3299192_5	1297865.APJD01000014_gene605	4.413e-209	656.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2TTGJ@28211|Alphaproteobacteria,3JT9Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Cys/Met metabolism PLP-dependent enzyme	MA20_26420	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2
SX3_k127_3304016_3	1297865.APJD01000010_gene4847	4.226e-136	435.0	COG2513@1|root,COG2513@2|Bacteria,1N4VT@1224|Proteobacteria,2TUUN@28211|Alphaproteobacteria,3JRMG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate	-	-	4.1.1.3	ko:K01003	ko00620,ko01100,map00620,map01100	-	R00217	RC00040	ko00000,ko00001,ko01000	-	-	-	PEP_mutase
SX3_k127_3304016_6	1297865.APJD01000010_gene4848	3.365e-55	206.0	COG1254@1|root,COG1254@2|Bacteria,1PU46@1224|Proteobacteria,2UF7Z@28211|Alphaproteobacteria,3K02B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the acylphosphatase family	acyP	GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818	3.6.1.7	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	-	R00317,R01421,R01515	RC00043	ko00000,ko00001,ko01000	-	-	-	Acylphosphatase
SX3_k127_3304016_5	1230476.C207_06003	6.426e-114	368.0	COG1510@1|root,COG1510@2|Bacteria,1RA49@1224|Proteobacteria,2U2X2@28211|Alphaproteobacteria,3JV73@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory protein, arsR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_5,MarR_2
SX3_k127_3304016_4	1230476.C207_06002	2.164e-135	432.0	29Q66@1|root,30B54@2|Bacteria,1N9YZ@1224|Proteobacteria,2TS6J@28211|Alphaproteobacteria,3JSHI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4166)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4166
SX3_k127_3304016_1	1297865.APJD01000010_gene4851	9.289e-302	930.0	COG1090@1|root,COG1090@2|Bacteria,1MUB4@1224|Proteobacteria,2TRY5@28211|Alphaproteobacteria,3JRAI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1731)	-	-	-	ko:K07071	-	-	-	-	ko00000	-	-	-	DUF1731,Epimerase
SX3_k127_3304016_8	1230476.C207_06000	7.718e-17	87.0	2AGT7@1|root,31719@2|Bacteria,1NIW4@1224|Proteobacteria,2UMGN@28211|Alphaproteobacteria,3K1UE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3304016_2	1297865.APJD01000010_gene4852	1.282e-157	497.0	COG0321@1|root,COG0321@2|Bacteria,1MU6A@1224|Proteobacteria,2TRXJ@28211|Alphaproteobacteria,3JTKG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate	lipB	GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564	2.3.1.181	ko:K03801	ko00785,ko01100,map00785,map01100	-	R07766,R07769	RC00039,RC00992,RC02867	ko00000,ko00001,ko01000	-	-	-	BPL_LplA_LipB
SX3_k127_3304016_7	1230476.C207_05998	8.408e-43	157.0	COG1886@1|root,COG1886@2|Bacteria,1N1JC@1224|Proteobacteria,2UC3S@28211|Alphaproteobacteria,3K03R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Type III flagellar switch regulator (C-ring) FliN C-term	QU41_23035	-	-	ko:K02417	ko02030,ko02040,map02030,map02040	-	-	-	ko00000,ko00001,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	FliMN_C
SX3_k127_3304016_0	1297865.APJD01000010_gene4854	0.0	1200.0	COG3344@1|root,COG3344@2|Bacteria,1R44F@1224|Proteobacteria,2U6GB@28211|Alphaproteobacteria,3K6C2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Reverse transcriptase (RNA-dependent DNA polymerase)	-	-	-	-	-	-	-	-	-	-	-	-	RVT_1
SX3_k127_33071_3	1120999.JONM01000005_gene3790	6.025e-64	225.0	2DM32@1|root,31HYP@2|Bacteria,1RIXI@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_33071_1	1500306.JQLA01000028_gene3818	2.426e-80	273.0	COG1136@1|root,COG1136@2|Bacteria,1RA2E@1224|Proteobacteria,2U5W8@28211|Alphaproteobacteria,4BEKY@82115|Rhizobiaceae	28211|Alphaproteobacteria	V	ATPases associated with a variety of cellular activities	-	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
SX3_k127_33071_2	485913.Krac_5613	2.021e-69	244.0	COG1136@1|root,COG1136@2|Bacteria,2G6C9@200795|Chloroflexi	2|Bacteria	V	PFAM ABC transporter related	-	-	-	ko:K02003,ko:K09810	ko02010,map02010	M00255,M00258	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1,3.A.1.125	-	-	ABC_tran
SX3_k127_33071_0	1500306.JQLA01000028_gene3820	1.65e-243	769.0	COG0577@1|root,COG0577@2|Bacteria,1PRGU@1224|Proteobacteria,2U2BA@28211|Alphaproteobacteria,4BDIX@82115|Rhizobiaceae	28211|Alphaproteobacteria	V	FtsX-like permease family	-	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
SX3_k127_3307834_0	1297865.APJD01000002_gene4110	6.224e-279	862.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JWY2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal
SX3_k127_3307834_1	1297865.APJD01000002_gene4111	3.677e-158	503.0	COG1028@1|root,COG1028@2|Bacteria,1MUWC@1224|Proteobacteria,2TV32@28211|Alphaproteobacteria,3JRJH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_35415	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
SX3_k127_3307834_2	1297865.APJD01000002_gene4112	5.499e-56	196.0	COG5470@1|root,COG5470@2|Bacteria,1PJI0@1224|Proteobacteria,2U9BT@28211|Alphaproteobacteria,3JZP8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1330)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1330
SX3_k127_3313663_5	1297865.APJD01000022_gene361	2.317e-184	580.0	COG3591@1|root,COG3591@2|Bacteria,1Q1IR@1224|Proteobacteria,2UGJ9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Belongs to the peptidase S1B family	-	-	-	-	-	-	-	-	-	-	-	-	Trypsin_2
SX3_k127_3313663_10	1297865.APJD01000022_gene363	5.777e-88	291.0	2E5X4@1|root,330M2@2|Bacteria,1RD6Z@1224|Proteobacteria,2UUD7@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3313663_3	319003.Bra1253DRAFT_02722	0.0	1034.0	COG0419@1|root,COG0419@2|Bacteria,1PUYY@1224|Proteobacteria,2U6NY@28211|Alphaproteobacteria,3K3AA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	ATPase involved in DNA repair	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3313663_11	196490.AUEZ01000004_gene4011	4.558e-19	89.0	COG2135@1|root,COG2135@2|Bacteria,1PZ3Z@1224|Proteobacteria,2TTEE@28211|Alphaproteobacteria,3JRY9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the SOS response-associated peptidase family	-	-	-	-	-	-	-	-	-	-	-	-	SRAP
SX3_k127_3313663_16	1040989.AWZU01000011_gene4176	6.219e-05	47.0	COG2135@1|root,COG2135@2|Bacteria,1PZ3Z@1224|Proteobacteria,2TTEE@28211|Alphaproteobacteria,3JRY9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the SOS response-associated peptidase family	-	-	-	-	-	-	-	-	-	-	-	-	SRAP
SX3_k127_3313663_12	316057.RPD_0010	2.782e-17	83.0	COG2135@1|root,COG2135@2|Bacteria,1PZ3Z@1224|Proteobacteria,2TTEE@28211|Alphaproteobacteria,3JRY9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the SOS response-associated peptidase family	-	-	-	-	-	-	-	-	-	-	-	-	SRAP
SX3_k127_3313663_15	189753.AXAS01000067_gene5044	9.4e-10	62.0	COG2135@1|root,COG2135@2|Bacteria,1ND0F@1224|Proteobacteria,2UHA7@28211|Alphaproteobacteria,3K1MV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	peptidase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3313663_13	342113.DM82_349	8.123e-17	91.0	2F46T@1|root,33WXU@2|Bacteria,1NTIH@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3313663_0	1297865.APJD01000022_gene365	0.0	2571.0	COG5635@1|root,COG5635@2|Bacteria,1NC67@1224|Proteobacteria,2U3F4@28211|Alphaproteobacteria,3K27I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Nacht domain	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3313663_1	1297865.APJD01000022_gene366	0.0	1406.0	COG4928@1|root,COG4928@2|Bacteria,1PV0G@1224|Proteobacteria,2U6R8@28211|Alphaproteobacteria,3K69D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KAP family P-loop domain	-	-	-	-	-	-	-	-	-	-	-	-	KAP_NTPase
SX3_k127_3313663_2	1229205.BUPH_08277	0.0	1118.0	COG0470@1|root,COG0470@2|Bacteria,1PWZ9@1224|Proteobacteria,2W47P@28216|Betaproteobacteria,1K7V0@119060|Burkholderiaceae	28216|Betaproteobacteria	L	DNA polymerase III	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3313663_8	1038866.KB902779_gene5607	1.287e-111	365.0	COG1273@1|root,COG1273@2|Bacteria,1NU1V@1224|Proteobacteria,2UQTY@28211|Alphaproteobacteria,3K2VR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ku70/Ku80 beta-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	Ku
SX3_k127_3313663_7	1297865.APJD01000022_gene369	1.101e-118	383.0	2AIKU@1|root,31933@2|Bacteria,1NR4W@1224|Proteobacteria,2UPDS@28211|Alphaproteobacteria,3K2KR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3313663_4	319003.Bra1253DRAFT_02696	1.959e-202	632.0	COG3547@1|root,COG3547@2|Bacteria,1MUER@1224|Proteobacteria,2TQTP@28211|Alphaproteobacteria,3JR1M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	PFAM transposase IS116 IS110 IS902 family	-	-	-	-	-	-	-	-	-	-	-	-	DEDD_Tnp_IS110,Transposase_20
SX3_k127_3313663_6	1297865.APJD01000022_gene370	6.172e-182	571.0	COG4227@1|root,COG4227@2|Bacteria,1MU8I@1224|Proteobacteria,2TRIT@28211|Alphaproteobacteria,3JR5I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Domain of unknown function (DUF1738)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1738
SX3_k127_3317945_1	1297865.APJD01000023_gene1185	1.498e-105	344.0	2AKJF@1|root,31BBH@2|Bacteria,1NYW4@1224|Proteobacteria,2UTW5@28211|Alphaproteobacteria,3K4JB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	VPEP
SX3_k127_3317945_3	1297865.APJD01000023_gene1186	8.562e-65	222.0	COG2916@1|root,COG2916@2|Bacteria	2|Bacteria	S	protein dimerization activity	hvrA	-	-	ko:K03746	-	-	-	-	ko00000,ko03036,ko03400	-	-	-	Histone_HNS
SX3_k127_3317945_5	1030157.AFMP01000062_gene3609	5.111e-26	117.0	COG3210@1|root,COG3210@2|Bacteria,1NC4M@1224|Proteobacteria	1224|Proteobacteria	U	Protein of unknown function (DUF642)	-	-	-	-	-	-	-	-	-	-	-	-	DUF642
SX3_k127_3317945_4	1304878.AUGD01000013_gene2803	1.294e-30	124.0	2AKJY@1|root,31BC3@2|Bacteria,1NYXH@1224|Proteobacteria,2UTS6@28211|Alphaproteobacteria,3K49X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3317945_6	1000565.METUNv1_02962	8.131e-24	109.0	2BUI5@1|root,32PUE@2|Bacteria,1RHFT@1224|Proteobacteria,2VT0W@28216|Betaproteobacteria,2KZHV@206389|Rhodocyclales	206389|Rhodocyclales	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3317945_2	316055.RPE_1097	2.374e-97	331.0	COG1215@1|root,COG1215@2|Bacteria,1PU38@1224|Proteobacteria,2U5E7@28211|Alphaproteobacteria,3JYSY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family group 2	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tranf_2_3,Glyco_trans_2_3
SX3_k127_3317945_7	545264.KB898744_gene2208	5.938e-15	85.0	COG0726@1|root,COG0726@2|Bacteria,1MVKH@1224|Proteobacteria,1RZ5C@1236|Gammaproteobacteria,1WX9Q@135613|Chromatiales	135613|Chromatiales	G	PFAM Polysaccharide deacetylase	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_3317945_0	1297865.APJD01000041_gene2644	2.84e-152	483.0	COG0438@1|root,COG0438@2|Bacteria,1MVKK@1224|Proteobacteria,2TUFG@28211|Alphaproteobacteria,3JRWK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_3321374_2	1297865.APJD01000062_gene3378	2.052e-164	524.0	COG0671@1|root,COG0671@2|Bacteria,1RKIU@1224|Proteobacteria,2UBF9@28211|Alphaproteobacteria,3JZM9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	PAP2 superfamily	-	-	-	-	-	-	-	-	-	-	-	-	PAP2_3
SX3_k127_3321374_4	1297865.APJD01000062_gene3377	6.154e-103	335.0	COG1247@1|root,COG1247@2|Bacteria,1RCMW@1224|Proteobacteria,2U631@28211|Alphaproteobacteria,3JYH9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3321374_7	1297865.APJD01000062_gene3376	7.186e-80	267.0	COG5649@1|root,COG5649@2|Bacteria,1RGY3@1224|Proteobacteria,2U9AG@28211|Alphaproteobacteria,3JY3Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DU1801)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1801
SX3_k127_3321374_10	1297865.APJD01000062_gene3375	1.305e-34	138.0	2E54V@1|root,32ZXS@2|Bacteria,1N6QG@1224|Proteobacteria,2UG8S@28211|Alphaproteobacteria,3K1A5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3321374_5	1297865.APJD01000062_gene3374	5.354e-94	310.0	COG3832@1|root,COG3832@2|Bacteria,1RA7N@1224|Proteobacteria,2U5AM@28211|Alphaproteobacteria,3JY0Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	MA20_01005	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_3321374_9	1297865.APJD01000062_gene3373	5.379e-66	226.0	COG0640@1|root,COG0640@2|Bacteria,1RGYC@1224|Proteobacteria,2UA77@28211|Alphaproteobacteria,3JYV4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	MA20_01010	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5
SX3_k127_3321374_3	1297865.APJD01000062_gene3372	1.84e-158	502.0	COG0288@1|root,COG0288@2|Bacteria,1NGFN@1224|Proteobacteria,2TU0G@28211|Alphaproteobacteria,3JSWW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Reversible hydration of carbon dioxide	-	-	4.2.1.1	ko:K01673	ko00910,map00910	-	R00132,R10092	RC02807	ko00000,ko00001,ko01000	-	-	-	Pro_CA
SX3_k127_3321374_1	1297865.APJD01000062_gene3371	1.761e-168	530.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2TZJ8@28211|Alphaproteobacteria,3JTHJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	MA20_08420	-	4.1.1.77	ko:K01617	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R02602,R05374	RC00751,RC02672	ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
SX3_k127_3321374_0	1297865.APJD01000062_gene3370	1.822e-230	720.0	COG0451@1|root,COG0451@2|Bacteria,1MW32@1224|Proteobacteria,2TTTU@28211|Alphaproteobacteria,3JUH8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	NAD(P)H-binding	-	-	1.1.1.219	ko:K00091	-	-	-	-	ko00000,ko01000	-	-	-	Epimerase
SX3_k127_3321374_8	1297865.APJD01000062_gene3369	1.07e-78	268.0	COG1733@1|root,COG1733@2|Bacteria,1RGDU@1224|Proteobacteria,2U837@28211|Alphaproteobacteria,3JYC6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_3321374_6	1297865.APJD01000062_gene3368	1.92e-80	268.0	2DB9K@1|root,2Z7XA@2|Bacteria,1R4GI@1224|Proteobacteria,2TZ7A@28211|Alphaproteobacteria,3JTVQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phytanoyl-CoA dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
SX3_k127_3327576_1	1297865.APJD01000011_gene6585	5.101e-46	166.0	COG2931@1|root,COG4254@1|root,COG2931@2|Bacteria,COG4254@2|Bacteria,1MU7T@1224|Proteobacteria,2TV0C@28211|Alphaproteobacteria,3JS2H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	QU	FecR protein	-	-	-	-	-	-	-	-	-	-	-	-	Cadherin_3,FecR,HemolysinCabind,Laminin_G_3,VWA
SX3_k127_3327576_0	1297865.APJD01000011_gene6586	0.0	1485.0	COG2114@1|root,COG4252@1|root,COG2114@2|Bacteria,COG4252@2|Bacteria,1MV1V@1224|Proteobacteria,2TRTY@28211|Alphaproteobacteria,3JQS3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	CHASE2	cyaD	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	CHASE2,Guanylate_cyc
SX3_k127_3352901_7	1297865.APJD01000033_gene6938	1.243e-270	835.0	COG3115@1|root,COG3115@2|Bacteria,1QR19@1224|Proteobacteria,2U3VA@28211|Alphaproteobacteria,3JV0B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	YXWGXW repeat (2 copies)	-	-	-	-	-	-	-	-	-	-	-	-	YXWGXW
SX3_k127_3352901_5	1297865.APJD01000033_gene6937	0.0	1267.0	COG2072@1|root,COG2072@2|Bacteria,1MWPJ@1224|Proteobacteria,2TT05@28211|Alphaproteobacteria,3JS8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	-	-	-	ko:K07222	-	-	-	-	ko00000	-	-	-	FMO-like,NAD_binding_8,Pyr_redox_3,SnoaL_2
SX3_k127_3352901_4	1297865.APJD01000033_gene6936	0.0	1292.0	COG3284@1|root,COG3284@2|Bacteria,1NRG5@1224|Proteobacteria,2TR0H@28211|Alphaproteobacteria,3JS68@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KQ	Sigma-54 interaction domain	acoR	-	-	ko:K21405	-	-	-	-	ko00000,ko03000	-	-	-	GAF,HTH_8,Sigma54_activ_2,Sigma54_activat
SX3_k127_3352901_6	883078.HMPREF9695_04900	3.594e-295	906.0	COG0582@1|root,COG0582@2|Bacteria,1N2H9@1224|Proteobacteria,2TS7K@28211|Alphaproteobacteria,3JWPB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Arm-DNA-bind_3,Phage_int_SAM_3,Phage_integrase
SX3_k127_3352901_24	1197906.CAJQ02000034_gene2727	7.199e-06	51.0	28JH2@1|root,2Z9AN@2|Bacteria,1R66S@1224|Proteobacteria,2TSDF@28211|Alphaproteobacteria,3K34Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3352901_2	883078.HMPREF9695_04901	0.0	2037.0	COG1204@1|root,COG4249@1|root,COG1204@2|Bacteria,COG4249@2|Bacteria,1MW4Z@1224|Proteobacteria,2V1SH@28211|Alphaproteobacteria,3JXXC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	DEAD,Helicase_C,Peptidase_C14
SX3_k127_3352901_22	883078.HMPREF9695_04902	6.08e-44	162.0	28XTK@1|root,2ZJQ1@2|Bacteria,1MZJV@1224|Proteobacteria,2UCH0@28211|Alphaproteobacteria,3K0N7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized small protein (DUF2158)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2158
SX3_k127_3352901_19	883078.HMPREF9695_04903	8.104e-94	314.0	2BWTI@1|root,32SZZ@2|Bacteria,1RACU@1224|Proteobacteria,2U5TW@28211|Alphaproteobacteria,3JYFI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3352901_9	883078.HMPREF9695_04904	6.326e-258	796.0	COG0476@1|root,COG0476@2|Bacteria,1R4EI@1224|Proteobacteria,2TR42@28211|Alphaproteobacteria,3JXNC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	ThiF family	-	-	-	-	-	-	-	-	-	-	-	-	ThiF
SX3_k127_3352901_18	452662.SJA_C1-20370	9.234e-98	325.0	28H70@1|root,2Z7JB@2|Bacteria,1R4R9@1224|Proteobacteria,2U1IS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Multiubiquitin	-	-	-	-	-	-	-	-	-	-	-	-	Multi_ubiq,Prok-E2_E
SX3_k127_3352901_1	1304878.AUGD01000003_gene2777	0.0	2222.0	COG0210@1|root,COG2856@1|root,COG0210@2|Bacteria,COG2856@2|Bacteria,1MZGR@1224|Proteobacteria,2TSRX@28211|Alphaproteobacteria,3JUSG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	IrrE N-terminal-like domain	-	-	-	-	-	-	-	-	-	-	-	-	PDDEXK_1,Peptidase_M78,UvrD-helicase,UvrD_C
SX3_k127_3352901_17	1304878.AUGD01000003_gene2778	4.605e-113	369.0	28MGI@1|root,2ZATR@2|Bacteria,1R5N2@1224|Proteobacteria,2U3CU@28211|Alphaproteobacteria,3JVC6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3352901_14	1304878.AUGD01000003_gene2779	4.986e-179	564.0	COG2197@1|root,COG2197@2|Bacteria,1R5TF@1224|Proteobacteria,2TR69@28211|Alphaproteobacteria,3JX1Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	response regulator	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3352901_11	1304878.AUGD01000003_gene2780	2.574e-233	724.0	COG2253@1|root,COG2253@2|Bacteria,1PZRM@1224|Proteobacteria,2TTHC@28211|Alphaproteobacteria,3JRXM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nucleotidyl transferase AbiEii toxin, Type IV TA system	-	-	-	-	-	-	-	-	-	-	-	-	AbiEii
SX3_k127_3352901_15	1304878.AUGD01000003_gene2781	2.05e-173	546.0	COG5340@1|root,COG5340@2|Bacteria,1R1GM@1224|Proteobacteria,2TTDH@28211|Alphaproteobacteria,3JXVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Psort location Cytoplasmic, score	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3352901_16	1304878.AUGD01000003_gene2782	3.486e-124	402.0	COG5340@1|root,COG5340@2|Bacteria,1R1GM@1224|Proteobacteria,2TTDH@28211|Alphaproteobacteria,3JV9C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Psort location Cytoplasmic, score	-	-	-	-	-	-	-	-	-	-	-	-	AbiEi_4
SX3_k127_3352901_8	1304878.AUGD01000003_gene2783	1.54e-263	812.0	2CDQ7@1|root,2Z7KV@2|Bacteria,1MY2D@1224|Proteobacteria,2TR92@28211|Alphaproteobacteria,3JX05@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3352901_10	1304878.AUGD01000003_gene2784	1.261e-241	759.0	2C884@1|root,313NF@2|Bacteria,1R8IE@1224|Proteobacteria,2TR2D@28211|Alphaproteobacteria,3JWWR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3800)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3800
SX3_k127_3352901_3	1304878.AUGD01000003_gene2785	0.0	1400.0	COG1475@1|root,COG1475@2|Bacteria,1MVF9@1224|Proteobacteria,2TR0P@28211|Alphaproteobacteria,3JSCN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
SX3_k127_3352901_21	1297865.APJD01000033_gene6920	6.582e-90	298.0	28Q3D@1|root,2ZCM1@2|Bacteria,1RAVJ@1224|Proteobacteria,2U5R4@28211|Alphaproteobacteria,3JYAH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3352901_0	1297865.APJD01000033_gene6919	0.0	2817.0	COG0553@1|root,COG0553@2|Bacteria,1MXQH@1224|Proteobacteria,2TR5V@28211|Alphaproteobacteria,3JRHR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KL	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	AAA_34,Helicase_C_4
SX3_k127_3352901_12	1297865.APJD01000033_gene6918	1.657e-226	703.0	COG4643@1|root,COG4643@2|Bacteria,1MW9E@1224|Proteobacteria,2TS3B@28211|Alphaproteobacteria,3JT6Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Toprim domain	-	-	-	-	-	-	-	-	-	-	-	-	Toprim_3
SX3_k127_3352901_23	441620.Mpop_3067	1.741e-06	53.0	2C0ZE@1|root,2Z7S6@2|Bacteria,1MW5M@1224|Proteobacteria,2TQVZ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2493)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2493
SX3_k127_3352901_13	1297865.APJD01000033_gene6917	5.466e-188	592.0	2C0ZE@1|root,2Z7S6@2|Bacteria,1MW5M@1224|Proteobacteria,2TQVZ@28211|Alphaproteobacteria,3JSD7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2493)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2493
SX3_k127_3356565_5	1297865.APJD01000012_gene1329	5.757e-139	442.0	COG3605@1|root,COG3605@2|Bacteria,1QTTV@1224|Proteobacteria,2TR3Z@28211|Alphaproteobacteria,3JV6Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Belongs to the PEP-utilizing enzyme family	ptsP	-	2.7.3.9	ko:K08484	ko02060,map02060	-	-	-	ko00000,ko00001,ko01000,ko02000	-	-	-	GAF,GAF_2,PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C
SX3_k127_3356565_2	1297865.APJD01000012_gene1328	2.901e-221	688.0	COG0216@1|root,COG0216@2|Bacteria,1MV28@1224|Proteobacteria,2TQSV@28211|Alphaproteobacteria,3JUZF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA	prfA	-	-	ko:K02835	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
SX3_k127_3356565_7	1297865.APJD01000012_gene1327	1.772e-77	261.0	COG1846@1|root,COG1846@2|Bacteria,1N0KC@1224|Proteobacteria,2UC6T@28211|Alphaproteobacteria,3JYFA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	MarR family	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_3356565_6	1297865.APJD01000012_gene1326	4.04e-95	312.0	2A5XE@1|root,30UPF@2|Bacteria,1R4CE@1224|Proteobacteria,2TVMT@28211|Alphaproteobacteria,3JWZ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3356565_1	1297865.APJD01000012_gene1325	3.744e-301	925.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3JVAV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_3356565_3	1297865.APJD01000012_gene1324	2.711e-176	554.0	COG0559@1|root,COG0559@2|Bacteria,1MY1E@1224|Proteobacteria,2TSIQ@28211|Alphaproteobacteria,3JR6D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_3356565_0	1297865.APJD01000012_gene1323	0.0	1204.0	COG0411@1|root,COG4177@1|root,COG0411@2|Bacteria,COG4177@2|Bacteria,1MUTY@1224|Proteobacteria,2TQVU@28211|Alphaproteobacteria,3JRTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01995,ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C,BPD_transp_2
SX3_k127_3356565_4	1297865.APJD01000012_gene1322	6.315e-141	458.0	COG0410@1|root,COG0410@2|Bacteria,1MUR3@1224|Proteobacteria,2TSWQ@28211|Alphaproteobacteria,3JRHZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_3366666_3	1297865.APJD01000010_gene4964	5.619e-153	484.0	COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,2TTKG@28211|Alphaproteobacteria,3JTI1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	-	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_3366666_1	1297865.APJD01000010_gene4963	4.432e-275	861.0	COG0642@1|root,COG2205@2|Bacteria,1MUAK@1224|Proteobacteria,2TSUC@28211|Alphaproteobacteria,3JVQQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
SX3_k127_3366666_5	1297865.APJD01000010_gene4962	2.825e-96	318.0	2EE7W@1|root,3382F@2|Bacteria,1NFC5@1224|Proteobacteria,2UINU@28211|Alphaproteobacteria,3K1C8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	EF hand	-	-	-	-	-	-	-	-	-	-	-	-	EF-hand_5
SX3_k127_3366666_6	1297865.APJD01000010_gene4961	6.084e-93	307.0	COG1846@1|root,COG1846@2|Bacteria,1RAVH@1224|Proteobacteria,2U6I0@28211|Alphaproteobacteria,3K69P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044212,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	-	-	-	-	-	-	-	-	-	MarR
SX3_k127_3366666_7	1297865.APJD01000010_gene4960	4.602e-79	270.0	COG1764@1|root,COG1764@2|Bacteria,1RD92@1224|Proteobacteria,2VGCK@28211|Alphaproteobacteria,3JY9H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	OsmC-like protein	-	-	-	-	-	-	-	-	-	-	-	-	OsmC
SX3_k127_3366666_4	1297865.APJD01000010_gene4959	5.334e-103	335.0	COG1917@1|root,COG1917@2|Bacteria,1RCXV@1224|Proteobacteria,2U6MY@28211|Alphaproteobacteria,3JYZJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF861)	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_3366666_0	1297865.APJD01000010_gene4958	3.229e-318	979.0	COG0477@1|root,COG0477@2|Bacteria,1MX9T@1224|Proteobacteria,2VF11@28211|Alphaproteobacteria,3JXBD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_3366666_2	1297865.APJD01000010_gene4957	4.82e-204	636.0	COG0583@1|root,COG0583@2|Bacteria,1MVKF@1224|Proteobacteria,2U0G8@28211|Alphaproteobacteria,3JX6W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	hexA	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3366666_8	391595.RLO149_c020630	1.418e-38	158.0	COG0583@1|root,COG0583@2|Bacteria,1PX1B@1224|Proteobacteria,2TUE7@28211|Alphaproteobacteria,2P3PM@2433|Roseobacter	28211|Alphaproteobacteria	K	COG0583 Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3366666_9	1297865.APJD01000010_gene4955	1.043e-25	113.0	COG0477@1|root,COG2814@2|Bacteria,1QTYE@1224|Proteobacteria,2TWZ3@28211|Alphaproteobacteria,3JREM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_3376470_8	1297865.APJD01000014_gene817	3.059e-27	110.0	COG1247@1|root,COG1247@2|Bacteria,1MYQB@1224|Proteobacteria,2TTJM@28211|Alphaproteobacteria,3JUNC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	MA20_14980	-	2.3.1.183	ko:K03823	ko00440,ko01130,map00440,map01130	-	R08871,R08938	RC00004,RC00064	ko00000,ko00001,ko01000	-	-	-	Acetyltransf_4
SX3_k127_3376470_6	398525.KB900701_gene5853	8.598e-46	166.0	COG3360@1|root,COG3360@2|Bacteria,1N6UT@1224|Proteobacteria,2UFCS@28211|Alphaproteobacteria,3K077@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Dodecin	-	-	-	ko:K09165	-	-	-	-	ko00000	-	-	-	Dodecin
SX3_k127_3376470_4	1297865.APJD01000014_gene819	4.977e-111	360.0	COG3247@1|root,COG3247@2|Bacteria,1RFIH@1224|Proteobacteria,2U5WE@28211|Alphaproteobacteria,3JTES@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Short repeat of unknown function (DUF308)	-	-	-	-	-	-	-	-	-	-	-	-	DUF308
SX3_k127_3376470_3	1297865.APJD01000014_gene820	1.553e-147	468.0	2C2X7@1|root,31WBU@2|Bacteria,1R3G2@1224|Proteobacteria,2U02F@28211|Alphaproteobacteria,3K725@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF4239)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4239
SX3_k127_3376470_1	1297865.APJD01000014_gene821	6.457e-201	627.0	COG2423@1|root,COG2423@2|Bacteria,1MWH6@1224|Proteobacteria,2TSR9@28211|Alphaproteobacteria,3JWXU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Ornithine cyclodeaminase/mu-crystallin family	-	-	4.3.1.12	ko:K01750	ko00330,ko01110,ko01130,ko01230,map00330,map01110,map01130,map01230	-	R00671	RC00354	ko00000,ko00001,ko01000	-	-	-	OCD_Mu_crystall
SX3_k127_3376470_2	1297865.APJD01000014_gene822	7.701e-201	627.0	COG1072@1|root,COG1072@2|Bacteria,1MV3M@1224|Proteobacteria,2TS7E@28211|Alphaproteobacteria,3JUEA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Phosphoribulokinase / Uridine kinase family	coaA	-	2.7.1.33	ko:K00867	ko00770,ko01100,map00770,map01100	M00120	R02971,R03018,R04391	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PRK
SX3_k127_3376470_0	1297865.APJD01000014_gene823	0.0	1524.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TWGU@28211|Alphaproteobacteria,3JQT8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	aldehyde oxidase and xanthine dehydrogenase, a b hammerhead	-	-	-	-	-	-	-	-	-	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2,Fer2,Fer2_2
SX3_k127_3376470_5	1297865.APJD01000014_gene824	5.183e-102	332.0	COG2080@1|root,COG2080@2|Bacteria,1RB3F@1224|Proteobacteria,2VF0C@28211|Alphaproteobacteria,3JW4Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	-	-	1.2.5.3	ko:K03518	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Fer2,Fer2_2
SX3_k127_3376470_7	1297865.APJD01000014_gene825	2.735e-33	128.0	COG1319@1|root,COG1319@2|Bacteria,1RCRH@1224|Proteobacteria,2TU08@28211|Alphaproteobacteria,3JSJE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CO dehydrogenase flavoprotein C-terminal domain	xdhB	-	1.2.5.3	ko:K03519	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
SX3_k127_3377797_2	1297865.APJD01000015_gene3447	2.72e-206	668.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria,3JTE3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_FMN
SX3_k127_3377797_1	1297865.APJD01000015_gene3448	4.384e-259	799.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3K2NT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_3377797_0	1297865.APJD01000015_gene3449	2.698e-296	908.0	COG0318@1|root,COG0318@2|Bacteria,1MWSD@1224|Proteobacteria,2TU6Y@28211|Alphaproteobacteria,3JUQ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_3381249_10	1297865.APJD01000020_gene305	1.207e-131	420.0	COG4964@1|root,COG4964@2|Bacteria,1MV8G@1224|Proteobacteria,2TRNN@28211|Alphaproteobacteria,3JTDQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Bacterial type II and III secretion system protein	cpaC	-	-	ko:K02280	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	BON,Secretin,T2SS-T3SS_pil_N
SX3_k127_3381249_7	1297865.APJD01000020_gene304	1.113e-159	503.0	COG5461@1|root,COG5461@2|Bacteria,1MWWE@1224|Proteobacteria,2TU2Q@28211|Alphaproteobacteria,3JQNJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	TIGRFAM pilus (Caulobacter type) biogenesis lipoprotein CpaD	cpaD	-	-	ko:K02281	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	Pilus_CpaD
SX3_k127_3381249_5	1297865.APJD01000020_gene303	5.901e-264	826.0	COG4963@1|root,COG4963@2|Bacteria,1MWNY@1224|Proteobacteria,2TUDS@28211|Alphaproteobacteria,3JSEM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Cellulose biosynthesis protein BcsQ	cpaE	-	-	ko:K02282	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	AAA_31,CBP_BcsQ
SX3_k127_3381249_8	1297865.APJD01000020_gene302	8.641e-155	491.0	COG5010@1|root,COG5010@2|Bacteria,1MVTK@1224|Proteobacteria,2TVD4@28211|Alphaproteobacteria,3JRRX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_11,TPR_16,TPR_19,TPR_2,TPR_4,TPR_8
SX3_k127_3381249_12	1230476.C207_00980	2.046e-46	168.0	29CXU@1|root,2ZZVX@2|Bacteria,1N1UK@1224|Proteobacteria,2UCXX@28211|Alphaproteobacteria,3K03H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_24680	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_3381249_4	1297865.APJD01000020_gene300	0.0	1038.0	COG1283@1|root,COG1283@2|Bacteria,1MUDE@1224|Proteobacteria,2TRF9@28211|Alphaproteobacteria,3JTC5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_30080	-	-	ko:K03324	-	-	-	-	ko00000,ko02000	2.A.58.2	-	-	Na_Pi_cotrans,PhoU
SX3_k127_3381249_2	1297865.APJD01000020_gene299	0.0	1161.0	COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2U2NN@28211|Alphaproteobacteria,3JW5H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Peptidase family M23	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
SX3_k127_3381249_11	1297865.APJD01000020_gene298	4.038e-64	226.0	COG3952@1|root,COG3952@2|Bacteria,1MZ60@1224|Proteobacteria,2UCCY@28211|Alphaproteobacteria,3JYUH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lipid A Biosynthesis N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	LAB_N
SX3_k127_3381249_9	1297865.APJD01000020_gene297	9.077e-153	488.0	COG0463@1|root,COG0463@2|Bacteria,1MW2G@1224|Proteobacteria,2TTR9@28211|Alphaproteobacteria,3JRY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family 2	MA20_30090	-	2.4.1.83	ko:K00721	ko00510,ko01100,map00510,map01100	-	R01009	RC00005	ko00000,ko00001,ko01000,ko01003	-	GT2	-	Glycos_transf_2
SX3_k127_3381249_6	1297865.APJD01000020_gene296	1.022e-166	529.0	COG0671@1|root,COG0671@2|Bacteria,1N7CW@1224|Proteobacteria,2TRDP@28211|Alphaproteobacteria,3JSYX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acid phosphatase homologues	lpxE	-	3.6.1.27	ko:K19302	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	PAP2
SX3_k127_3381249_3	1297865.APJD01000020_gene295	0.0	1109.0	COG1807@1|root,COG1807@2|Bacteria,1NMIZ@1224|Proteobacteria,2TRS4@28211|Alphaproteobacteria,3JUHV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	glycosyl transferase, family 39	MA20_30100	-	-	-	-	-	-	-	-	-	-	-	PMT,PMT_2
SX3_k127_3381249_1	1297865.APJD01000020_gene294	0.0	1396.0	COG4953@1|root,COG4953@2|Bacteria,1MUA9@1224|Proteobacteria,2TR2R@28211|Alphaproteobacteria,3JS2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-Binding Protein C-terminus Family	pbpC	-	2.4.1.129	ko:K05367	ko00550,map00550	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	BiPBP_C,Transgly,Transpeptidase
SX3_k127_3381249_0	1297865.APJD01000020_gene293	0.0	3084.0	COG2373@1|root,COG2373@2|Bacteria,1MV7J@1224|Proteobacteria,2TSAE@28211|Alphaproteobacteria,3JTU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha-2-Macroglobulin	MA20_30110	-	-	ko:K06894	-	-	-	-	ko00000	-	-	-	A2M,A2M_N,A2M_N_2,MG1,PAN_1,Thiol-ester_cl
SX3_k127_3396735_28	1297865.APJD01000011_gene6572	1.763e-43	158.0	COG0789@1|root,COG0789@2|Bacteria,1N9C6@1224|Proteobacteria,2UC87@28211|Alphaproteobacteria,3K16A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator MerR family	-	-	-	-	-	-	-	-	-	-	-	-	MerR,MerR-DNA-bind,MerR_1
SX3_k127_3396735_5	1297865.APJD01000011_gene6571	2.351e-268	829.0	COG0477@1|root,COG0477@2|Bacteria,1MWXZ@1224|Proteobacteria,2TT27@28211|Alphaproteobacteria,3JVI0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_3396735_7	1297865.APJD01000011_gene6570	6.374e-231	740.0	COG3618@1|root,COG3618@2|Bacteria,1MVG0@1224|Proteobacteria,2TRU9@28211|Alphaproteobacteria,3JVRE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	ko:K07046	ko00051,ko01120,map00051,map01120	-	R10689	RC00537	ko00000,ko00001,ko01000	-	-	-	Amidohydro_2
SX3_k127_3396735_13	1230476.C207_05945	2.597e-188	591.0	COG0454@1|root,COG0456@2|Bacteria,1PVAE@1224|Proteobacteria,2V4H8@28211|Alphaproteobacteria,3JWQJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FR47-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_3396735_2	1297865.APJD01000011_gene6568	1.038e-291	896.0	COG2309@1|root,COG2309@2|Bacteria,1MW2Y@1224|Proteobacteria,2TSGB@28211|Alphaproteobacteria,3JTH5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Thermophilic metalloprotease (M29)	ampS	-	-	ko:K19689	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M29
SX3_k127_3396735_3	1297865.APJD01000011_gene6567	8.295e-290	891.0	COG0015@1|root,COG0015@2|Bacteria,1MXNN@1224|Proteobacteria,2TRCE@28211|Alphaproteobacteria,3JT32@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Adenylosuccinate lyase C-terminus	MA20_19490	-	5.5.1.2	ko:K01857	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R03307	RC00902	ko00000,ko00001,ko01000	-	-	-	ADSL_C,Lyase_1
SX3_k127_3396735_22	1297865.APJD01000011_gene6566	4.358e-76	256.0	COG0599@1|root,COG0599@2|Bacteria,1RAV9@1224|Proteobacteria,2U5V1@28211|Alphaproteobacteria,3JYGT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carboxymuconolactone decarboxylase family	-	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_3396735_12	1297865.APJD01000011_gene6565	1.749e-197	617.0	COG3181@1|root,COG3181@2|Bacteria,1MYJX@1224|Proteobacteria,2U07W@28211|Alphaproteobacteria,3JR3F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_3396735_15	1297865.APJD01000011_gene6564	4.724e-172	544.0	COG2084@1|root,COG2084@2|Bacteria,1R7WF@1224|Proteobacteria,2U3AW@28211|Alphaproteobacteria,3JS3Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_3396735_11	1297865.APJD01000011_gene6563	3.7e-208	647.0	COG0673@1|root,COG0673@2|Bacteria,1MU8F@1224|Proteobacteria,2U12U@28211|Alphaproteobacteria,3JX1N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase family, NAD-binding Rossmann fold	-	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
SX3_k127_3396735_17	1297865.APJD01000011_gene6562	2.738e-160	505.0	COG2188@1|root,COG2188@2|Bacteria,1R4G0@1224|Proteobacteria,2U3SJ@28211|Alphaproteobacteria,3JX9W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	UTRA	-	-	-	ko:K03710	-	-	-	-	ko00000,ko03000	-	-	-	GntR,UTRA
SX3_k127_3396735_32	1297865.APJD01000011_gene6561	2.264e-19	88.0	2BMTS@1|root,32GDA@2|Bacteria,1NGYM@1224|Proteobacteria,2UKWT@28211|Alphaproteobacteria,3K230@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3396735_33	398525.KB900701_gene1048	3.437e-19	88.0	2AB6R@1|root,310M2@2|Bacteria,1P6EW@1224|Proteobacteria,2UWD6@28211|Alphaproteobacteria,3K56Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3396735_29	1297865.APJD01000011_gene6560	3.398e-41	152.0	2BGVV@1|root,32AVN@2|Bacteria,1P3P5@1224|Proteobacteria,2UVSQ@28211|Alphaproteobacteria,3K4S7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3396735_31	1230476.C207_05931	1.374e-29	120.0	2BK5P@1|root,32EJA@2|Bacteria,1P0PC@1224|Proteobacteria,2UVH5@28211|Alphaproteobacteria,3K4NV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3396735_9	1297865.APJD01000011_gene6559	1.023e-221	693.0	COG1181@1|root,COG1181@2|Bacteria,1N4F5@1224|Proteobacteria,2U1M9@28211|Alphaproteobacteria,3JWED@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the D-alanine--D-alanine ligase family	-	-	6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	-	R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Dala_Dala_lig_C,Methyltransf_25
SX3_k127_3396735_6	1297865.APJD01000011_gene6558	1.114e-233	722.0	COG4307@1|root,COG4307@2|Bacteria,1MXES@1224|Proteobacteria,2U06R@28211|Alphaproteobacteria,3JRXQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative zinc-binding metallo-peptidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_Mx
SX3_k127_3396735_21	1297865.APJD01000011_gene6557	2.853e-76	257.0	2C945@1|root,32W5M@2|Bacteria,1RFGX@1224|Proteobacteria,2U8ZD@28211|Alphaproteobacteria,3JYPA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	5.4.4.1	ko:K01865	ko00627,ko01120,map00627,map01120	-	-	-	ko00000,ko00001,ko01000	-	-	-	-
SX3_k127_3396735_4	1297865.APJD01000011_gene6556	6.118e-274	846.0	COG4941@1|root,COG4941@2|Bacteria,1MU3D@1224|Proteobacteria,2TSNH@28211|Alphaproteobacteria,3JWFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Sigma-70 region 2	-	-	-	-	-	-	-	-	-	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_3396735_24	172088.AUGA01000040_gene5042	3.877e-68	231.0	COG3795@1|root,COG3795@2|Bacteria,1NUVF@1224|Proteobacteria,2URRF@28211|Alphaproteobacteria,3K3VS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
SX3_k127_3396735_23	1297865.APJD01000011_gene6554	2.864e-73	247.0	COG3795@1|root,COG3795@2|Bacteria,1RH6U@1224|Proteobacteria,2U5GH@28211|Alphaproteobacteria,3JY8B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
SX3_k127_3396735_19	1297865.APJD01000011_gene6553	7.843e-148	478.0	293Y3@1|root,2ZRD4@2|Bacteria,1MW85@1224|Proteobacteria,2TR4S@28211|Alphaproteobacteria,3JVEE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protease inhibitor Inh	MA20_40350	-	-	-	-	-	-	-	-	-	-	-	Inh
SX3_k127_3396735_10	1297865.APJD01000011_gene6552	2.096e-209	651.0	COG1052@1|root,COG1052@2|Bacteria,1MU2D@1224|Proteobacteria,2TTJV@28211|Alphaproteobacteria,3JR7H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	D-isomer specific 2-hydroxyacid dehydrogenase	MA20_40345	-	-	-	-	-	-	-	-	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_3396735_18	1297865.APJD01000011_gene6551	1.195e-149	488.0	COG0600@1|root,COG0600@2|Bacteria,1MVAE@1224|Proteobacteria,2TSP5@28211|Alphaproteobacteria,3JS67@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_40340	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_3396735_16	1297865.APJD01000011_gene6550	1.715e-166	526.0	COG1116@1|root,COG1116@2|Bacteria,1MUIM@1224|Proteobacteria,2TRHM@28211|Alphaproteobacteria,3JQMP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_3396735_8	1297865.APJD01000011_gene6549	1.009e-222	693.0	COG0715@1|root,COG0715@2|Bacteria,1MXA3@1224|Proteobacteria,2TTW8@28211|Alphaproteobacteria,3JR3I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1/THI5 like	MA20_40330	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
SX3_k127_3396735_14	1297865.APJD01000011_gene6548	3.149e-176	552.0	COG1402@1|root,COG1402@2|Bacteria,1MXR9@1224|Proteobacteria,2TUFR@28211|Alphaproteobacteria,3JQU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Creatinine amidohydrolase	-	-	3.5.2.10	ko:K01470	ko00330,map00330	-	R01884	RC00615	ko00000,ko00001,ko01000	-	-	-	Creatininase
SX3_k127_3396735_25	1297865.APJD01000011_gene6547	4.977e-52	186.0	296A2@1|root,2ZTK1@2|Bacteria,1RJF0@1224|Proteobacteria,2UCIA@28211|Alphaproteobacteria,3K0K1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_40320	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3396735_26	1297865.APJD01000011_gene6546	1.101e-50	180.0	COG1937@1|root,COG1937@2|Bacteria,1N1ES@1224|Proteobacteria,2UCP2@28211|Alphaproteobacteria,3JZQ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal-sensitive transcriptional repressor	-	-	-	ko:K07807	-	-	-	-	ko00000	-	-	-	Trns_repr_metal
SX3_k127_3396735_27	1230476.C207_05917	2.657e-44	162.0	2AQN2@1|root,31FVA@2|Bacteria,1P8CJ@1224|Proteobacteria,2UWR6@28211|Alphaproteobacteria,3K5R7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3396735_20	1297865.APJD01000011_gene6545	7.041e-86	286.0	COG0140@1|root,COG0140@2|Bacteria,1N4JQ@1224|Proteobacteria,2UE16@28211|Alphaproteobacteria,3K0G1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Phosphoribosyl-ATP pyrophosphohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	PRA-PH
SX3_k127_3396735_1	1297865.APJD01000011_gene6543	0.0	1080.0	COG1914@1|root,COG1914@2|Bacteria,1N0XH@1224|Proteobacteria,2VG5I@28211|Alphaproteobacteria,3JU6A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Nramp
SX3_k127_3396735_30	1297865.APJD01000011_gene6542	6.524e-39	157.0	2BP9T@1|root,32I1M@2|Bacteria,1P0WW@1224|Proteobacteria,2UU0C@28211|Alphaproteobacteria,3K4RI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3396735_0	1297865.APJD01000011_gene6541	0.0	1317.0	COG3637@1|root,COG3659@1|root,COG3637@2|Bacteria,COG3659@2|Bacteria,1Q8C7@1224|Proteobacteria,2TU66@28211|Alphaproteobacteria,3JRBM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Carbohydrate-selective porin, OprB family	-	-	-	ko:K16080	-	-	-	-	ko00000,ko02000	1.B.4.2.2	-	-	OMP_b-brl,OprB
SX3_k127_340373_5	288000.BBta_0090	1.028e-229	720.0	COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,2TQJZ@28211|Alphaproteobacteria,3JSGA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the helicase family. UvrD subfamily	addA	-	3.6.4.12	ko:K16898	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	PDDEXK_1,UvrD-helicase,UvrD_C
SX3_k127_340373_0	1297865.APJD01000028_gene5250	0.0	2055.0	COG2887@1|root,COG3893@1|root,COG2887@2|Bacteria,COG3893@2|Bacteria,1MY2G@1224|Proteobacteria,2TS74@28211|Alphaproteobacteria,3JSBK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	PD-(D/E)XK nuclease superfamily	addB	-	3.6.4.12	ko:K16899	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	PDDEXK_1
SX3_k127_340373_7	1297865.APJD01000028_gene5251	1.81e-188	591.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2TRAK@28211|Alphaproteobacteria,3JTDE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_340373_8	1297865.APJD01000028_gene5252	4.181e-168	532.0	COG0385@1|root,COG0385@2|Bacteria,1MVXH@1224|Proteobacteria,2TTE0@28211|Alphaproteobacteria,3JTHY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bile acid	-	-	-	ko:K03453	-	-	-	-	ko00000	2.A.28	-	-	SBF
SX3_k127_340373_6	1297865.APJD01000028_gene5253	5.241e-227	720.0	2C57D@1|root,2Z7RS@2|Bacteria,1MX6G@1224|Proteobacteria,2TTDU@28211|Alphaproteobacteria,3JSAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2891)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2891
SX3_k127_340373_10	1297865.APJD01000028_gene5254	1.366e-158	500.0	COG1208@1|root,COG1208@2|Bacteria,1R9ZD@1224|Proteobacteria,2TU2V@28211|Alphaproteobacteria,3JRYE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	JM	Nucleotidyl transferase	MA20_24100	-	2.7.7.13,2.7.7.99	ko:K00966,ko:K00992	ko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110	M00114,M00361,M00362	R00885,R11025	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transf_3,NTP_transferase
SX3_k127_340373_12	398525.KB900701_gene1442	2.163e-68	232.0	2CBFG@1|root,348C5@2|Bacteria,1RM6A@1224|Proteobacteria,2U989@28211|Alphaproteobacteria,3JZKW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_24095	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_340373_3	1297865.APJD01000028_gene5256	0.0	1014.0	COG0802@1|root,COG3178@1|root,COG0802@2|Bacteria,COG3178@2|Bacteria,1MXCH@1224|Proteobacteria,2TSJD@28211|Alphaproteobacteria,3JTQ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Threonylcarbamoyl adenosine biosynthesis protein TsaE	MA20_24090	-	2.7.1.221	ko:K07102	ko00520,ko01100,map00520,map01100	-	R08968,R11024	RC00002,RC00078	ko00000,ko00001,ko01000	-	-	-	APH,TsaE
SX3_k127_340373_1	1297865.APJD01000028_gene5257	0.0	1631.0	COG0642@1|root,COG2205@2|Bacteria,1MVY8@1224|Proteobacteria,2TS5B@28211|Alphaproteobacteria,3JTRQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	divL	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_7,PAS_8
SX3_k127_340373_11	1297865.APJD01000028_gene5258	3.818e-89	301.0	COG0756@1|root,COG0756@2|Bacteria,1RA7P@1224|Proteobacteria,2U7B5@28211|Alphaproteobacteria,3JYQC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	dut	GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576	3.6.1.23	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	M00053	R02100,R11896	RC00002	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	dUTPase
SX3_k127_340373_4	1297865.APJD01000028_gene5259	1.157e-296	912.0	COG0452@1|root,COG0452@2|Bacteria,1MVQP@1224|Proteobacteria,2TRN1@28211|Alphaproteobacteria,3JSH2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine	coaBC	-	4.1.1.36,6.3.2.5	ko:K13038,ko:K21977	ko00770,ko01100,map00770,map01100	M00120	R03269,R04231	RC00064,RC00090,RC00822	ko00000,ko00001,ko00002,ko01000	-	-	-	DFP,Flavoprotein
SX3_k127_340373_2	1297865.APJD01000028_gene5260	0.0	1020.0	COG0661@1|root,COG0661@2|Bacteria,1MU1Z@1224|Proteobacteria,2TS87@28211|Alphaproteobacteria,3JQV2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis	ubiB	-	-	ko:K03688	-	-	-	-	ko00000	-	-	-	ABC1
SX3_k127_340373_9	1297865.APJD01000028_gene5261	2.464e-165	520.0	COG0500@1|root,COG2226@2|Bacteria,1MX8I@1224|Proteobacteria,2TRWR@28211|Alphaproteobacteria,3JTSU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2)	ubiE	-	2.1.1.163,2.1.1.201	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00116,M00117	R04990,R04993,R06859,R08774,R09736	RC00003,RC01253,RC01662	ko00000,ko00001,ko00002,ko01000	-	-	-	Ubie_methyltran
SX3_k127_340373_13	1230476.C207_02297	4.874e-29	116.0	COG0266@1|root,COG0266@2|Bacteria,1MVM5@1224|Proteobacteria,2TS4C@28211|Alphaproteobacteria,3JRJ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates	fpg	-	3.2.2.23,4.2.99.18	ko:K10563	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Fapy_DNA_glyco,H2TH,zf-FPG_IleRS
SX3_k127_3406674_15	1230476.C207_02257	7.092e-51	183.0	2DPXH@1|root,333TM@2|Bacteria,1RHX5@1224|Proteobacteria,2U946@28211|Alphaproteobacteria,3JZSK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3406674_2	1297865.APJD01000028_gene5221	0.0	1047.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JW47@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_24255	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_3406674_4	1297865.APJD01000028_gene5220	3.321e-250	772.0	COG3268@1|root,COG3268@2|Bacteria,1MVI3@1224|Proteobacteria,2TR30@28211|Alphaproteobacteria,3JV2S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Saccharopine dehydrogenase NADP binding domain	MA20_24260	-	-	-	-	-	-	-	-	-	-	-	Sacchrp_dh_NADP
SX3_k127_3406674_7	1297865.APJD01000028_gene5219	1.666e-160	511.0	COG1028@1|root,COG1028@2|Bacteria,1PBCC@1224|Proteobacteria,2U0Z7@28211|Alphaproteobacteria,3JU5W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_3406674_11	1297865.APJD01000028_gene5218	1.097e-123	398.0	COG1309@1|root,COG1309@2|Bacteria,1QZIQ@1224|Proteobacteria,2U28R@28211|Alphaproteobacteria,3JWGK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_24270	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_3406674_13	398525.KB900701_gene1479	1.454e-86	288.0	COG1762@1|root,COG1762@2|Bacteria,1RD0E@1224|Proteobacteria,2U7B0@28211|Alphaproteobacteria,3JT8F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GT	PTS IIA-like nitrogen-regulatory protein PtsN	ptsN	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0015144,GO:0016020,GO:0016740,GO:0016772,GO:0016773,GO:0022804,GO:0022857,GO:0034219,GO:0044424,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0090563	-	ko:K02806	ko02060,map02060	-	-	-	ko00000,ko00001,ko01000,ko02000	-	-	-	PTS_EIIA_2
SX3_k127_3406674_12	1297865.APJD01000028_gene5216	4.518e-119	385.0	COG1544@1|root,COG1544@2|Bacteria,1MZHW@1224|Proteobacteria,2TV3J@28211|Alphaproteobacteria,3JRKU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase	hpf	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113	-	ko:K05808	-	-	-	-	ko00000,ko03009	-	-	-	Ribosom_S30AE_C,Ribosomal_S30AE
SX3_k127_3406674_1	1297865.APJD01000028_gene5215	0.0	1067.0	COG1508@1|root,COG1508@2|Bacteria,1MW4V@1224|Proteobacteria,2TS41@28211|Alphaproteobacteria,3JRJQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	rpoN	-	-	ko:K03092	ko02020,ko05111,map02020,map05111	-	-	-	ko00000,ko00001,ko03021	-	-	-	Sigma54_AID,Sigma54_CBD,Sigma54_DBD
SX3_k127_3406674_5	1297865.APJD01000028_gene5214	8.777e-208	647.0	COG1137@1|root,COG1137@2|Bacteria,1MU8M@1224|Proteobacteria,2TR7F@28211|Alphaproteobacteria,3JSM6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter	lptB	-	-	ko:K06861	ko02010,map02010	M00320	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	1.B.42.1	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_3406674_9	1297865.APJD01000028_gene5213	4.15e-146	469.0	COG1934@1|root,COG1934@2|Bacteria,1MXGA@1224|Proteobacteria,2U6DD@28211|Alphaproteobacteria,3JTRX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	OstA-like protein	lptA	-	-	ko:K09774	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	OstA
SX3_k127_3406674_8	1297865.APJD01000028_gene5212	8.681e-149	472.0	COG5375@1|root,COG5375@2|Bacteria,1R4YG@1224|Proteobacteria,2TUTA@28211|Alphaproteobacteria,3JRFN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lipopolysaccharide-assembly, LptC-related	-	-	-	ko:K11719	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	LptC
SX3_k127_3406674_10	1297865.APJD01000028_gene5211	1.115e-131	421.0	COG0349@1|root,COG0349@2|Bacteria,1MWFD@1224|Proteobacteria,2TQXS@28211|Alphaproteobacteria,3JRA3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	3'-5' exonuclease	rnd1	-	3.1.13.5	ko:K03684	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DNA_pol_A_exo1
SX3_k127_3406674_0	1297865.APJD01000028_gene5210	0.0	1740.0	COG3468@1|root,COG3468@2|Bacteria,1R5IK@1224|Proteobacteria,2TUHS@28211|Alphaproteobacteria,3JVID@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter
SX3_k127_3406674_3	1297865.APJD01000028_gene5209	1.131e-259	803.0	COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,2U3E9@28211|Alphaproteobacteria,3JQVK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_3406674_6	1297865.APJD01000028_gene5208	8.765e-201	627.0	COG1234@1|root,COG1234@2|Bacteria,1R64Z@1224|Proteobacteria,2U0BA@28211|Alphaproteobacteria,3K6AV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Beta-lactamase superfamily domain	-	-	3.1.26.11	ko:K00784	ko03013,map03013	-	-	-	ko00000,ko00001,ko01000,ko03016	-	-	-	Lactamase_B,Lactamase_B_2
SX3_k127_3420414_1	1297865.APJD01000033_gene7020	2.351e-266	822.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JV8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase,DUF3471
SX3_k127_3420414_2	1297865.APJD01000033_gene7019	1.814e-65	224.0	2ENEC@1|root,33G1V@2|Bacteria,1RDM6@1224|Proteobacteria,2U7B6@28211|Alphaproteobacteria,3JZ0W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_23800	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3420414_0	1297865.APJD01000033_gene7018	0.0	997.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JSVT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase	gabD	GO:0000166,GO:0001505,GO:0003674,GO:0003824,GO:0004777,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006105,GO:0006520,GO:0006536,GO:0006538,GO:0006540,GO:0006807,GO:0008150,GO:0008152,GO:0009013,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009448,GO:0009450,GO:0009987,GO:0016054,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0019752,GO:0032787,GO:0036094,GO:0042133,GO:0042135,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	1.2.1.16,1.2.1.20,1.2.1.79	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	M00027	R00713,R00714,R02401	RC00080	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_3420414_3	1297865.APJD01000033_gene7017	4.261e-33	127.0	COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2TTE3@28211|Alphaproteobacteria,3JVA1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	ko:K10001	ko02010,ko02020,map02010,map02020	M00230	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.19,3.A.1.3.4	-	-	SBP_bac_3
SX3_k127_3453335_0	1297865.APJD01000012_gene1347	0.0	1996.0	COG0457@1|root,COG3914@1|root,COG0457@2|Bacteria,COG3914@2|Bacteria,1MVMG@1224|Proteobacteria,2TRVB@28211|Alphaproteobacteria,3JR8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_41,Methyltransf_23,TPR_1,TPR_11,TPR_16,TPR_2,TPR_8
SX3_k127_3453335_1	1297865.APJD01000012_gene1346	0.0	1897.0	COG0653@1|root,COG0653@2|Bacteria,1MUJZ@1224|Proteobacteria,2TTBF@28211|Alphaproteobacteria,3JU9H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane	secA	GO:0000166,GO:0002790,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015627,GO:0015628,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:0098776,GO:1901265,GO:1901363,GO:1904680	-	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4	-	-	SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW
SX3_k127_3453335_2	1297865.APJD01000012_gene1345	2.627e-183	576.0	COG0760@1|root,COG0760@2|Bacteria,1MZDK@1224|Proteobacteria,2TVQD@28211|Alphaproteobacteria,3JR5Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Peptidylprolyl isomerase	ppiC	-	5.2.1.8	ko:K01802,ko:K03769	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	Rotamase,Rotamase_3
SX3_k127_3453335_3	1230476.C207_07037	4.95e-134	432.0	COG1364@1|root,COG1364@2|Bacteria,1MU0T@1224|Proteobacteria,2TS98@28211|Alphaproteobacteria,3JT8Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate	argJ	GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.1.1,2.3.1.35	ko:K00620	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028	R00259,R02282	RC00004,RC00064	ko00000,ko00001,ko00002,ko01000	-	-	-	ArgJ
SX3_k127_3458756_0	1297865.APJD01000036_gene1402	0.0	4574.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,3JS9Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	haemagglutination activity domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF3739,Glug,Haemagg_act
SX3_k127_346078_1	1297865.APJD01000002_gene4175	8.163e-142	450.0	COG3239@1|root,COG3239@2|Bacteria,1MW29@1224|Proteobacteria,2TSHW@28211|Alphaproteobacteria,3JX9Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Fatty acid desaturase	alkB	-	1.14.15.3	ko:K00496	ko00071,ko00930,map00071,map00930	-	R01347,R02281,R06945	RC00478	ko00000,ko00001,ko01000	-	-	-	FA_desaturase
SX3_k127_346078_4	1297865.APJD01000002_gene4174	7.048e-70	239.0	2BTW5@1|root,32P40@2|Bacteria,1REN2@1224|Proteobacteria,2U7RX@28211|Alphaproteobacteria,3JYPX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_346078_3	288000.BBta_0641	2.746e-114	375.0	2C3U2@1|root,30RRG@2|Bacteria,1RGFH@1224|Proteobacteria,2USYI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_346078_2	288000.BBta_0640	8.976e-124	402.0	COG3751@1|root,COG3751@2|Bacteria,1RJST@1224|Proteobacteria,2UAC0@28211|Alphaproteobacteria,3K0EZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	2OG-Fe(II) oxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	2OG-FeII_Oxy_3
SX3_k127_346078_7	1205680.CAKO01000040_gene818	5.809e-25	115.0	COG2242@1|root,COG2242@2|Bacteria,1QX6B@1224|Proteobacteria,2TZAR@28211|Alphaproteobacteria,2JUEP@204441|Rhodospirillales	204441|Rhodospirillales	H	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
SX3_k127_346078_5	1297865.APJD01000002_gene4173	1.141e-55	199.0	2FDWH@1|root,345WZ@2|Bacteria,1RINP@1224|Proteobacteria,2UD49@28211|Alphaproteobacteria,3JZTN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_23535	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_346078_0	1297865.APJD01000002_gene4172	6.917e-234	728.0	COG1680@1|root,COG1680@2|Bacteria,1NHIY@1224|Proteobacteria,2U0A3@28211|Alphaproteobacteria,3JT7A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_346078_6	1297865.APJD01000002_gene4171	1.773e-43	159.0	COG4709@1|root,COG4709@2|Bacteria,1RAQB@1224|Proteobacteria,2U62C@28211|Alphaproteobacteria,3JZ18@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1700)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1700
SX3_k127_3466576_1	1297865.APJD01000033_gene7041	3.503e-156	495.0	COG0779@1|root,COG0779@2|Bacteria,1RDP2@1224|Proteobacteria,2TS4E@28211|Alphaproteobacteria,3JTND@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Required for maturation of 30S ribosomal subunits	rimP	GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576	-	ko:K09748	-	-	-	-	ko00000,ko03009	-	-	-	DUF150,DUF150_C
SX3_k127_3466576_0	1297865.APJD01000033_gene7042	0.0	1026.0	COG0195@1|root,COG0195@2|Bacteria,1MWT7@1224|Proteobacteria,2TRQN@28211|Alphaproteobacteria,3JTAN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Participates in both transcription termination and antitermination	nusA	-	-	ko:K02600	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	HHH_5,KH_5,NusA_N,S1
SX3_k127_3466576_2	1297865.APJD01000033_gene7043	5.918e-135	431.0	COG2740@1|root,COG2740@2|Bacteria,1RHPR@1224|Proteobacteria,2U9RY@28211|Alphaproteobacteria,3JUXE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Protein of unknown function (DUF448)	MA20_23920	-	-	ko:K07742	-	-	-	-	ko00000	-	-	-	DUF448,Ribosomal_L7Ae
SX3_k127_3466576_3	172088.AUGA01000027_gene72	3.467e-26	107.0	COG0532@1|root,COG0532@2|Bacteria,1MV26@1224|Proteobacteria,2TQMY@28211|Alphaproteobacteria,3JRUZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	infB	-	-	ko:K02519	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc
SX3_k127_3497477_4	1297865.APJD01000010_gene5034	2.273e-172	544.0	COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,2TR5J@28211|Alphaproteobacteria,3JW4S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Endonuclease/Exonuclease/phosphatase family	xth	-	3.1.11.2	ko:K01142	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exo_endo_phos
SX3_k127_3497477_1	1297865.APJD01000010_gene5035	8.944e-270	832.0	COG0787@1|root,COG0787@2|Bacteria,1MV0Q@1224|Proteobacteria,2TQKD@28211|Alphaproteobacteria,3JT0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids	alr	-	5.1.1.1	ko:K01775	ko00473,ko01100,ko01502,map00473,map01100,map01502	-	R00401	RC00285	ko00000,ko00001,ko01000,ko01011	-	-	-	Ala_racemase_C,Ala_racemase_N
SX3_k127_3497477_0	1297865.APJD01000010_gene5036	0.0	1002.0	COG0305@1|root,COG0305@2|Bacteria,1MUG9@1224|Proteobacteria,2TSF9@28211|Alphaproteobacteria,3JRJJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	dnaB	-	3.6.4.12	ko:K02314	ko03030,ko04112,map03030,map04112	-	-	-	ko00000,ko00001,ko01000,ko03032	-	-	-	DnaB,DnaB_C
SX3_k127_3497477_9	1297865.APJD01000010_gene5037	3.358e-09	58.0	2BN3X@1|root,32GQU@2|Bacteria,1NQB6@1224|Proteobacteria,2UJS1@28211|Alphaproteobacteria,3K1W5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3497477_8	1297865.APJD01000010_gene5038	1.081e-17	99.0	29FBR@1|root,3029E@2|Bacteria,1NPHC@1224|Proteobacteria,2UKTG@28211|Alphaproteobacteria,3K1SX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3497477_2	1297865.APJD01000010_gene5039	9.088e-266	820.0	COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,2TR8K@28211|Alphaproteobacteria,3JSP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mycolic acid cyclopropane synthetase	cfa2	-	2.1.1.79	ko:K00574	-	-	-	-	ko00000,ko01000	-	-	-	CMAS
SX3_k127_3497477_5	1297865.APJD01000010_gene5040	5.028e-168	529.0	296J5@1|root,2ZTUQ@2|Bacteria,1MV40@1224|Proteobacteria,2U13Z@28211|Alphaproteobacteria,3JU0X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3497477_6	1297865.APJD01000010_gene5042	7.273e-115	371.0	COG0359@1|root,COG0359@2|Bacteria,1RD0R@1224|Proteobacteria,2TSC9@28211|Alphaproteobacteria,3JSJC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds to the 23S rRNA	rplI	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02939	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L9_C,Ribosomal_L9_N
SX3_k127_3497477_3	1297865.APJD01000010_gene5043	5.789e-180	565.0	2DNKH@1|root,32UJ8@2|Bacteria,1R362@1224|Proteobacteria,2TZYG@28211|Alphaproteobacteria,3JSYP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF2232
SX3_k127_3500404_2	1297865.APJD01000007_gene2034	2.357e-183	572.0	COG4638@1|root,COG4638@2|Bacteria,1N6MJ@1224|Proteobacteria,2TVEE@28211|Alphaproteobacteria,3JUWN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	1.14.12.1	ko:K00479,ko:K16319	ko00627,ko01120,map00627,map01120	M00637	R00823,R00825	RC00192	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Rieske,Ring_hydroxyl_A
SX3_k127_3500404_6	1297865.APJD01000007_gene2035	8.818e-102	333.0	COG5517@1|root,COG5517@2|Bacteria,1R8ZU@1224|Proteobacteria,2U2SC@28211|Alphaproteobacteria,3JVBM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Ring hydroxylating beta subunit	-	-	-	-	-	-	-	-	-	-	-	-	Ring_hydroxyl_B
SX3_k127_3500404_3	1297865.APJD01000007_gene2036	6.536e-157	499.0	COG1024@1|root,COG1024@2|Bacteria,1R67S@1224|Proteobacteria,2VF1B@28211|Alphaproteobacteria,3JW4Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_3500404_4	1297865.APJD01000007_gene2037	5.03e-146	464.0	COG1028@1|root,COG1028@2|Bacteria,1MU2T@1224|Proteobacteria,2TSDG@28211|Alphaproteobacteria,3JXVD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	1.1.1.100	ko:K00059,ko:K07535	ko00061,ko00333,ko00362,ko00780,ko01040,ko01100,ko01120,ko01130,ko01212,ko01220,map00061,map00333,map00362,map00780,map01040,map01100,map01120,map01130,map01212,map01220	M00083,M00540,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R05582,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117,RC00154	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_3500404_1	1297865.APJD01000007_gene2038	2.422e-200	627.0	COG0657@1|root,COG0657@2|Bacteria,1RD8A@1224|Proteobacteria,2U1B8@28211|Alphaproteobacteria,3JUPB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Steryl acetyl hydrolase	-	-	3.1.1.83	ko:K14731	ko00903,ko00930,ko01220,map00903,map00930,map01220	-	R03751,R06390,R06391,R06392,R06393	RC00713,RC00983,RC01505	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_3
SX3_k127_3500404_0	1297865.APJD01000007_gene2039	1.326e-258	804.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3JR8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_3500404_5	1297865.APJD01000007_gene2040	1.26e-124	398.0	COG2249@1|root,COG2249@2|Bacteria,1MUHN@1224|Proteobacteria,2U15Z@28211|Alphaproteobacteria,3JSDQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavodoxin-like fold	-	-	1.6.5.2	ko:K00355	ko00130,ko01110,ko05200,ko05225,ko05418,map00130,map01110,map05200,map05225,map05418	-	R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000	-	-	-	Flavodoxin_2
SX3_k127_3522951_8	1297865.APJD01000014_gene552	2.79e-148	470.0	COG1653@1|root,COG1653@2|Bacteria,1MU64@1224|Proteobacteria,2TTUB@28211|Alphaproteobacteria,3JSQS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_8,TAT_signal
SX3_k127_3522951_2	1297865.APJD01000014_gene553	6.563e-232	718.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,3JTEF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	MA20_27205	-	3.6.3.30	ko:K02010,ko:K10112	ko02010,map02010	M00190,M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.1,3.A.1.10	-	-	ABC_tran,TOBE,TOBE_2
SX3_k127_3522951_4	1297865.APJD01000014_gene554	4.828e-209	659.0	COG1609@1|root,COG1609@2|Bacteria,1MUEP@1224|Proteobacteria,2TQM4@28211|Alphaproteobacteria,3JSKW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn _helix lactose operon repressor	MA20_27200	-	-	ko:K06145	-	-	-	-	ko00000,ko03000	-	-	-	LacI,Peripla_BP_3
SX3_k127_3522951_0	1297865.APJD01000014_gene555	0.0	1281.0	COG0129@1|root,COG0129@2|Bacteria,1MV4I@1224|Proteobacteria,2TQRW@28211|Alphaproteobacteria,3JVG8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	Belongs to the IlvD Edd family	MA20_27195	-	4.2.1.82,4.2.1.9	ko:K01687,ko:K22186	ko00040,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00040,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R02429,R04441,R05070	RC00468,RC00543,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
SX3_k127_3522951_9	1297865.APJD01000014_gene556	1.41e-147	470.0	COG1028@1|root,COG1028@2|Bacteria,1MURZ@1224|Proteobacteria,2TQJ6@28211|Alphaproteobacteria,3JRV9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_27190	-	1.1.1.30	ko:K00019,ko:K18335	ko00051,ko00072,ko00650,ko01100,ko01120,map00051,map00072,map00650,map01100,map01120	M00088	R01361,R10690	RC00089,RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short_C2
SX3_k127_3522951_7	1297865.APJD01000014_gene557	3.008e-152	494.0	COG1028@1|root,COG1028@2|Bacteria,1MU2T@1224|Proteobacteria,2TSDG@28211|Alphaproteobacteria,3JT3N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_27185	-	1.1.1.401	ko:K21883	ko00051,ko01120,map00051,map01120	-	R11339	RC00089	ko00000,ko00001,ko01000	-	-	-	adh_short,adh_short_C2
SX3_k127_3522951_6	1297865.APJD01000014_gene558	3.974e-179	562.0	COG0583@1|root,COG0583@2|Bacteria,1PR6U@1224|Proteobacteria,2TUC6@28211|Alphaproteobacteria,3JW1Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator, LysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3522951_5	1297865.APJD01000014_gene559	2.843e-183	576.0	COG0697@1|root,COG0697@2|Bacteria,1PB22@1224|Proteobacteria,2U158@28211|Alphaproteobacteria,3JUX7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_3522951_10	1297865.APJD01000014_gene560	7.116e-135	448.0	COG1994@1|root,COG1994@2|Bacteria,1NSFF@1224|Proteobacteria,2TRIF@28211|Alphaproteobacteria,3JT09@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase M50	MA20_27160	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M50
SX3_k127_3522951_11	1297865.APJD01000014_gene561	6.716e-94	308.0	2A6WF@1|root,30VR7@2|Bacteria,1RB57@1224|Proteobacteria,2U5TP@28211|Alphaproteobacteria,3JYC5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3522951_1	1297865.APJD01000014_gene562	4.763e-258	798.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3JS24@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_3522951_3	1297865.APJD01000014_gene563	1.505e-209	653.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,2TVKR@28211|Alphaproteobacteria,3JSG5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DJ-1/PfpI family	-	-	-	ko:K13633	-	-	-	-	ko00000,ko03000	-	-	-	DJ-1_PfpI,HTH_18
SX3_k127_3524627_6	1297865.APJD01000047_gene4823	7.426e-247	762.0	COG0742@1|root,COG0742@2|Bacteria,1MW6A@1224|Proteobacteria,2TQNI@28211|Alphaproteobacteria,3JR22@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	ribosomal rna small subunit methyltransferase	MA20_07810	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3524627_4	1297865.APJD01000047_gene4822	2.417e-268	826.0	COG0192@1|root,COG0192@2|Bacteria,1MUFQ@1224|Proteobacteria,2TR4P@28211|Alphaproteobacteria,3JTYZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	metK	GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464	2.5.1.6	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	M00034,M00035,M00368,M00609	R00177,R04771	RC00021,RC01211	ko00000,ko00001,ko00002,ko01000	-	-	-	S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N
SX3_k127_3524627_2	1297865.APJD01000047_gene4821	1.204e-313	960.0	COG0499@1|root,COG0499@2|Bacteria,1MUQ2@1224|Proteobacteria,2TSJY@28211|Alphaproteobacteria,3JQTY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine	ahcY	GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657	3.3.1.1	ko:K01251	ko00270,ko01100,map00270,map01100	M00035	R00192,R04936	RC00056,RC00069,RC01161,RC01243	ko00000,ko00001,ko00002,ko01000,ko01009,ko04147	-	-	-	AdoHcyase,AdoHcyase_NAD
SX3_k127_3524627_8	398525.KB900701_gene6259	5.485e-157	497.0	COG1414@1|root,COG1414@2|Bacteria,1Q7BI@1224|Proteobacteria,2TUY4@28211|Alphaproteobacteria,3JRXR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial transcriptional regulator	MA20_00685	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR,IclR
SX3_k127_3524627_0	1297865.APJD01000047_gene4819	0.0	1184.0	COG1053@1|root,COG1053@2|Bacteria,1MURY@1224|Proteobacteria,2TSRQ@28211|Alphaproteobacteria,3JS1F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD binding domain	MA20_00690	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_2
SX3_k127_3524627_5	1297865.APJD01000047_gene4818	6.745e-256	790.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3JT98@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	MA20_00695	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_3524627_7	1297865.APJD01000047_gene4817	4.662e-206	645.0	COG3555@1|root,COG3555@2|Bacteria,1MW3M@1224|Proteobacteria,2TRVQ@28211|Alphaproteobacteria,3JUKX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Aspartyl/Asparaginyl beta-hydroxylase	MA20_07860	-	1.14.11.16	ko:K00476,ko:K12979	-	-	-	-	ko00000,ko01000,ko01005	-	-	-	Asp_Arg_Hydrox
SX3_k127_3524627_3	1297865.APJD01000047_gene4816	5.609e-284	873.0	COG2271@1|root,COG2271@2|Bacteria,1MVPS@1224|Proteobacteria,2TTHW@28211|Alphaproteobacteria,3K2J8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_3524627_1	1297865.APJD01000047_gene4815	0.0	1054.0	COG0281@1|root,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,2TQJT@28211|Alphaproteobacteria,3JT6H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Malic enzyme, NAD binding domain	-	-	1.1.1.38	ko:K00027	ko00620,ko01200,ko02020,map00620,map01200,map02020	-	R00214	RC00105	ko00000,ko00001,ko01000	-	-	-	Malic_M,malic
SX3_k127_3533689_11	1297865.APJD01000031_gene1583	3.713e-50	178.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,3JTAD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Heavy-metal-associated domain	-	-	3.6.3.4	ko:K01533	-	-	R00086	RC00002	ko00000,ko01000	3.A.3.5	-	-	E1-E2_ATPase,HMA,Hydrolase
SX3_k127_3533689_8	1230476.C207_04441	3.223e-86	287.0	COG5456@1|root,COG5456@2|Bacteria,1RHKI@1224|Proteobacteria,2U9GB@28211|Alphaproteobacteria,3JUM5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	FixH	fixH	-	-	-	-	-	-	-	-	-	-	-	FixH
SX3_k127_3533689_1	1297865.APJD01000031_gene1585	0.0	1010.0	COG0348@1|root,COG0348@2|Bacteria,1MVFY@1224|Proteobacteria,2TRYB@28211|Alphaproteobacteria,3JQTF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	4Fe-4S ferredoxin, iron-sulfur binding domain	ccoG	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	Fer4_18,Fer4_5,FixG_C
SX3_k127_3533689_4	1297865.APJD01000031_gene1586	6.567e-196	610.0	COG2010@1|root,COG2010@2|Bacteria,1MUCW@1224|Proteobacteria,2TQW1@28211|Alphaproteobacteria,3JQXG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex	ccoP	-	-	ko:K00406	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00156	-	-	ko00000,ko00001,ko00002	3.D.4.3	-	-	Cytochrome_CBB3,FixP_N
SX3_k127_3533689_16	1297865.APJD01000031_gene1587	1.484e-26	108.0	COG4736@1|root,COG4736@2|Bacteria,1N8DU@1224|Proteobacteria,2UG4W@28211|Alphaproteobacteria,3K0ZN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Cbb3-type cytochrome oxidase component FixQ	-	-	-	-	-	-	-	-	-	-	-	-	FixQ
SX3_k127_3533689_5	1297865.APJD01000031_gene1588	3.768e-152	503.0	COG2993@1|root,COG2993@2|Bacteria,1MXEY@1224|Proteobacteria,2TRGW@28211|Alphaproteobacteria,3JUIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, mono-heme subunit/FixO	ccoO	-	-	ko:K00405	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00156	-	-	ko00000,ko00001,ko00002	3.D.4.3	-	-	FixO
SX3_k127_3533689_0	1230476.C207_04446	0.0	1120.0	COG3278@1|root,COG3278@2|Bacteria,1MU18@1224|Proteobacteria,2TR2C@28211|Alphaproteobacteria,3JV5P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the heme-copper respiratory oxidase family	ccoN	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.9.3.1	ko:K00404	ko00190,ko01100,ko02020,map00190,map01100,map02020	M00156	-	-	ko00000,ko00001,ko00002,ko01000	3.D.4.3	-	-	COX1
SX3_k127_3533689_18	316058.RPB_4639	2.954e-10	67.0	2EHR2@1|root,33BGW@2|Bacteria,1RAEI@1224|Proteobacteria,2U6T1@28211|Alphaproteobacteria,3JYHP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_43630	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3533689_13	1297865.APJD01000031_gene1590	5.591e-44	160.0	2AAYH@1|root,310BZ@2|Bacteria,1N3FN@1224|Proteobacteria,2UD8C@28211|Alphaproteobacteria,3K0T8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3533689_6	1230476.C207_04448	2.825e-132	425.0	COG0517@1|root,COG0517@2|Bacteria,1NY5H@1224|Proteobacteria,2U1GG@28211|Alphaproteobacteria,3JTNC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	BON domain	-	-	-	-	-	-	-	-	-	-	-	-	BON,CBS
SX3_k127_3533689_19	1038866.KB902772_gene1029	7.244e-05	48.0	2BIC9@1|root,32CIA@2|Bacteria,1NMAG@1224|Proteobacteria,2UND6@28211|Alphaproteobacteria,3K1S3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3533689_10	398525.KB900701_gene394	1.364e-55	197.0	2A9HY@1|root,30YQ7@2|Bacteria,1RJ6U@1224|Proteobacteria,2UBDY@28211|Alphaproteobacteria,3K00V@41294|Bradyrhizobiaceae	398525.KB900701_gene394|-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3533689_12	1297865.APJD01000031_gene1594	9.798e-45	163.0	2CDU8@1|root,2ZKNS@2|Bacteria,1NHIM@1224|Proteobacteria,2UKKX@28211|Alphaproteobacteria,3K1E5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3533689_2	1297865.APJD01000031_gene1595	6.138e-304	934.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,3JR6P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	fixL	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.13.3	ko:K14986	ko02020,map02020	M00524	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	DUF4118,HATPase_c,HisKA,MEDS,PAS,PAS_3,PAS_9
SX3_k127_3533689_7	1297865.APJD01000031_gene1596	2.254e-114	372.0	COG4566@1|root,COG4566@2|Bacteria,1N6WR@1224|Proteobacteria,2TUND@28211|Alphaproteobacteria,3JRSJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	-	-	-	ko:K14987	ko02020,map02020	M00524	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	GerE,Response_reg
SX3_k127_3533689_3	1230476.C207_04453	2.168e-294	916.0	COG0840@1|root,COG4564@1|root,COG0840@2|Bacteria,COG4564@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JVDH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	4HB_MCP_1,HAMP,MCPsignal,PilZ,TarH,sCache_2
SX3_k127_3533689_14	1230476.C207_04455	2.529e-39	147.0	2EHU7@1|root,311XE@2|Bacteria,1N2I2@1224|Proteobacteria,2UDY1@28211|Alphaproteobacteria,3K07Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3533689_9	1230476.C207_04456	1.329e-71	249.0	COG0635@1|root,COG0635@2|Bacteria,1MV1I@1224|Proteobacteria,2TRKT@28211|Alphaproteobacteria,3JVP6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the anaerobic coproporphyrinogen-III oxidase family	hemN	-	-	-	-	-	-	-	-	-	-	-	HemN_C,Radical_SAM
SX3_k127_3535061_13	1297865.APJD01000020_gene99	4.227e-96	314.0	COG1612@1|root,COG1612@2|Bacteria,1MVJ4@1224|Proteobacteria,2TR0M@28211|Alphaproteobacteria,3JR20@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group	ctaA	-	-	ko:K02259	ko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714	M00154	R07412	RC00769	ko00000,ko00001,ko00002,ko03029	3.D.4.4	-	-	COX15-CtaA
SX3_k127_3535061_8	1297865.APJD01000020_gene100	9.154e-170	539.0	COG0157@1|root,COG0157@2|Bacteria,1MW0C@1224|Proteobacteria,2TS7C@28211|Alphaproteobacteria,3JSBS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the NadC ModD family	nadC	-	2.4.2.19	ko:K00767,ko:K03813	ko00760,ko01100,map00760,map01100	M00115	R03348	RC02877	ko00000,ko00001,ko00002,ko01000	-	-	-	QRPTase_C,QRPTase_N
SX3_k127_3535061_2	1297865.APJD01000020_gene101	0.0	1005.0	COG0029@1|root,COG0029@2|Bacteria,1RBQW@1224|Proteobacteria,2TS0E@28211|Alphaproteobacteria,3JSSV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the oxidation of L-aspartate to iminoaspartate	nadB	-	1.4.3.16	ko:K00278	ko00250,ko00760,ko01100,map00250,map00760,map01100	M00115	R00357,R00481	RC00006,RC02566	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_2,Succ_DH_flav_C
SX3_k127_3535061_5	1297865.APJD01000020_gene102	4.176e-213	662.0	COG0379@1|root,COG0379@2|Bacteria,1MWQU@1224|Proteobacteria,2TRPG@28211|Alphaproteobacteria,3JQQY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate	nadA	-	2.5.1.72	ko:K03517	ko00760,ko01100,map00760,map01100	M00115	R04292	RC01119	ko00000,ko00001,ko00002,ko01000	-	-	-	NadA
SX3_k127_3535061_7	1230476.C207_04995	4.215e-200	631.0	COG4111@1|root,COG4111@2|Bacteria,1MXHA@1224|Proteobacteria,2TQQU@28211|Alphaproteobacteria,3JRTI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	belongs to the nudix hydrolase family	MA20_42130	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3535061_16	1297865.APJD01000020_gene104	4.864e-83	276.0	2A7YT@1|root,30WYW@2|Bacteria,1RF6R@1224|Proteobacteria,2U7U1@28211|Alphaproteobacteria,3JZ67@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3535061_3	1297865.APJD01000020_gene105	7.706e-279	858.0	COG2873@1|root,COG2873@2|Bacteria,1NQME@1224|Proteobacteria,2TQW9@28211|Alphaproteobacteria,3JTRP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Beta-eliminating lyase	metY	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003961,GO:0004124,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006555,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0050667,GO:0071265,GO:0071266,GO:0071268,GO:0071269,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.5.1.47,2.5.1.49	ko:K01738,ko:K01740	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021	R00897,R01287,R03601,R04859	RC00020,RC02814,RC02821,RC02848	ko00000,ko00001,ko00002,ko01000	-	-	-	Cys_Met_Meta_PP
SX3_k127_3535061_11	1297865.APJD01000020_gene106	1.592e-121	391.0	COG1832@1|root,COG1832@2|Bacteria,1N03D@1224|Proteobacteria,2TUIY@28211|Alphaproteobacteria,3JQQK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CoA binding domain	yccU	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	ko:K06929	-	-	-	-	ko00000	-	-	-	CoA_binding_2
SX3_k127_3535061_9	1297865.APJD01000020_gene107	9.653e-167	525.0	COG1024@1|root,COG1024@2|Bacteria,1MUJ7@1224|Proteobacteria,2TTMB@28211|Alphaproteobacteria,3JRTP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase	MA20_36945	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_3535061_15	1230476.C207_05000	1.544e-83	278.0	COG2050@1|root,COG2050@2|Bacteria,1MZRJ@1224|Proteobacteria,2U9BM@28211|Alphaproteobacteria,3JY5S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	MA20_36950	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_3535061_12	398525.KB900701_gene5303	2.082e-97	319.0	COG0102@1|root,COG0102@2|Bacteria,1RA11@1224|Proteobacteria,2U5FM@28211|Alphaproteobacteria,3JUX1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	rplM	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02871	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L13
SX3_k127_3535061_14	1297865.APJD01000020_gene110	2.815e-94	310.0	COG0103@1|root,COG0103@2|Bacteria,1RD4A@1224|Proteobacteria,2U5B5@28211|Alphaproteobacteria,3JR49@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the universal ribosomal protein uS9 family	rpsI	GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02996	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S9
SX3_k127_3535061_4	1297865.APJD01000020_gene111	1.304e-261	808.0	COG2199@1|root,COG3706@2|Bacteria,1MZV7@1224|Proteobacteria,2TRAF@28211|Alphaproteobacteria,3JR84@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	MA20_36965	-	-	-	-	-	-	-	-	-	-	-	GGDEF
SX3_k127_3535061_17	1297865.APJD01000020_gene112	1.654e-40	150.0	29CMW@1|root,2ZZK5@2|Bacteria,1N0R2@1224|Proteobacteria,2UFKQ@28211|Alphaproteobacteria,3K0YI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3535061_6	1297865.APJD01000020_gene113	3.034e-212	669.0	COG0628@1|root,COG0628@2|Bacteria,1MW0B@1224|Proteobacteria,2TQSH@28211|Alphaproteobacteria,3JUWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AI-2E family transporter	-	-	-	-	-	-	-	-	-	-	-	-	AI-2E_transport
SX3_k127_3535061_10	172088.AUGA01000033_gene4583	3.213e-163	514.0	COG2071@1|root,COG2071@2|Bacteria,1MV8E@1224|Proteobacteria,2TSU3@28211|Alphaproteobacteria,3JTEG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase C26	puuD	-	-	ko:K07010	-	-	-	-	ko00000,ko01002	-	-	-	Peptidase_C26
SX3_k127_3535061_0	1297865.APJD01000020_gene115	0.0	1527.0	COG2931@1|root,COG2931@2|Bacteria,1R6U6@1224|Proteobacteria,2U1D4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	Q	domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3535061_1	1297865.APJD01000020_gene116	0.0	1045.0	COG0784@1|root,COG3852@1|root,COG4191@1|root,COG0784@2|Bacteria,COG3852@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JTQS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9,Response_reg
SX3_k127_3536733_1	883078.HMPREF9695_03889	3.58e-140	446.0	COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,2TU56@28211|Alphaproteobacteria,3JXSM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	-	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_3536733_5	1297865.APJD01000033_gene6905	7.886e-73	248.0	COG5489@1|root,COG5489@2|Bacteria,1REX2@1224|Proteobacteria,2U92M@28211|Alphaproteobacteria,3JZ4E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_3536733_3	1297865.APJD01000033_gene6906	8.046e-116	378.0	COG4959@1|root,COG4959@2|Bacteria,1MV1E@1224|Proteobacteria,2TV10@28211|Alphaproteobacteria,3JXJY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OU	Signal peptidase, peptidase S26	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S26
SX3_k127_3536733_4	883078.HMPREF9695_03892	6.725e-112	364.0	2BYDP@1|root,2Z7UG@2|Bacteria,1P8PK@1224|Proteobacteria,2U09C@28211|Alphaproteobacteria,3JS6P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2840)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2840
SX3_k127_3536733_6	1304878.AUGD01000042_gene5366	1.672e-43	166.0	2E43J@1|root,32YZW@2|Bacteria,1N99M@1224|Proteobacteria,2UH92@28211|Alphaproteobacteria,3K00Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3536733_2	1304878.AUGD01000042_gene5365	1.19e-131	423.0	COG1192@1|root,COG1192@2|Bacteria,1MWRE@1224|Proteobacteria,2TSJZ@28211|Alphaproteobacteria,3JTAG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	VirC1 protein	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
SX3_k127_3536733_0	883078.HMPREF9695_03895	4.86e-252	778.0	COG5534@1|root,COG5534@2|Bacteria,1MXQ0@1224|Proteobacteria,2TRBV@28211|Alphaproteobacteria,3JSIT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	PFAM Replication initiator protein A	-	-	-	-	-	-	-	-	-	-	-	-	RPA
SX3_k127_3536733_7	1320556.AVBP01000003_gene3882	9.45e-42	153.0	COG3311@1|root,COG3311@2|Bacteria,1RGX4@1224|Proteobacteria,2UBWS@28211|Alphaproteobacteria,43MEN@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_17
SX3_k127_3546945_7	1297865.APJD01000012_gene1365	1.698e-80	268.0	COG0825@1|root,COG0825@2|Bacteria,1MURN@1224|Proteobacteria,2TR6V@28211|Alphaproteobacteria,3JVAA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA	accA	-	2.1.3.15,6.4.1.2	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	ACCA
SX3_k127_3546945_1	1297865.APJD01000012_gene1364	9.811e-308	947.0	COG3034@1|root,COG3034@2|Bacteria,1MXY6@1224|Proteobacteria,2TS2U@28211|Alphaproteobacteria,3JTHD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	ErfK YbiS YcfS YnhG family protein	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_3546945_3	1297865.APJD01000012_gene1363	4.166e-227	709.0	COG2771@1|root,COG2771@2|Bacteria,1MWC0@1224|Proteobacteria,2TU6G@28211|Alphaproteobacteria,3K5SX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
SX3_k127_3546945_9	1297865.APJD01000012_gene1362	3.098e-77	258.0	COG3631@1|root,COG3631@2|Bacteria,1RD1I@1224|Proteobacteria,2U7YW@28211|Alphaproteobacteria,3JZ1X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
SX3_k127_3546945_0	1297865.APJD01000012_gene1361	0.0	1074.0	COG1231@1|root,COG1231@2|Bacteria,1MWPH@1224|Proteobacteria,2U05G@28211|Alphaproteobacteria,3JW1P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Flavin containing amine oxidoreductase	-	-	1.4.3.4	ko:K00274	ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034	M00135	R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354	RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713	ko00000,ko00001,ko00002,ko01000	-	-	-	Amino_oxidase
SX3_k127_3546945_8	1297865.APJD01000012_gene1360	1.79e-78	268.0	COG2010@1|root,COG2010@2|Bacteria,1N8E1@1224|Proteobacteria,2UG6N@28211|Alphaproteobacteria,3JZCS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
SX3_k127_3546945_6	1297865.APJD01000012_gene1359	2.906e-96	316.0	COG0251@1|root,COG0251@2|Bacteria,1RD3E@1224|Proteobacteria,2U888@28211|Alphaproteobacteria,3JTNZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
SX3_k127_3546945_5	1297865.APJD01000012_gene1358	1.807e-143	459.0	COG0410@1|root,COG0410@2|Bacteria,1MY03@1224|Proteobacteria,2TSGC@28211|Alphaproteobacteria,3JV77@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	MA20_39795	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_3546945_10	136993.KB900627_gene192	1.706e-42	166.0	COG4674@1|root,COG4674@2|Bacteria,1MUBR@1224|Proteobacteria,2TQVJ@28211|Alphaproteobacteria,36ZR5@31993|Methylocystaceae	28211|Alphaproteobacteria	S	Branched-chain amino acid ATP-binding cassette transporter	MA20_23055	-	-	ko:K11962	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_3546945_4	1230476.C207_06772	1.452e-211	661.0	COG4177@1|root,COG4177@2|Bacteria,1MX6P@1224|Proteobacteria,2TU00@28211|Alphaproteobacteria,3JUC7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_39785	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_3546945_2	1230476.C207_06771	1.757e-270	832.0	COG0683@1|root,COG0683@2|Bacteria,1MUZU@1224|Proteobacteria,2TS7Z@28211|Alphaproteobacteria,3JR4F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	MA20_39780	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_3563061_1	1297865.APJD01000006_gene4424	4.337e-196	612.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2TRAK@28211|Alphaproteobacteria,3JUEZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3563061_2	1297865.APJD01000006_gene4423	1.813e-168	531.0	COG0451@1|root,COG0451@2|Bacteria,1MWYB@1224|Proteobacteria,2TSDE@28211|Alphaproteobacteria,3JY3E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	NAD(P)H-binding	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
SX3_k127_3563061_3	1297865.APJD01000006_gene4422	6.698e-59	204.0	2CIT8@1|root,3422K@2|Bacteria,1N6MX@1224|Proteobacteria,2UIJW@28211|Alphaproteobacteria,3K1S7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DoxX-like family	-	-	-	-	-	-	-	-	-	-	-	-	DoxX_2
SX3_k127_3563061_0	1297865.APJD01000006_gene4421	1.013e-254	785.0	COG4102@1|root,COG4102@2|Bacteria,1MX4R@1224|Proteobacteria,2TSFB@28211|Alphaproteobacteria,3JV6P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1501)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1501
SX3_k127_3573856_7	1297865.APJD01000020_gene58	2.166e-232	720.0	COG0117@1|root,COG1985@1|root,COG0117@2|Bacteria,COG1985@2|Bacteria,1MUWT@1224|Proteobacteria,2TR70@28211|Alphaproteobacteria,3JR4M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate	ribD	-	1.1.1.193,3.5.4.26	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	M00125	R03458,R03459	RC00204,RC00933	ko00000,ko00001,ko00002,ko01000	-	-	-	RibD_C,dCMP_cyt_deam_1
SX3_k127_3573856_20	1297865.APJD01000020_gene59	7.15e-125	401.0	COG0307@1|root,COG0307@2|Bacteria,1MUMB@1224|Proteobacteria,2U3RS@28211|Alphaproteobacteria,3JSAI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Lumazine binding domain	ribE	GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.9	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00066	RC00958,RC00960	ko00000,ko00001,ko00002,ko01000	-	-	-	Lum_binding
SX3_k127_3573856_19	1297865.APJD01000020_gene60	5.315e-133	424.0	COG2941@1|root,COG2941@2|Bacteria,1RAK4@1224|Proteobacteria,2U85I@28211|Alphaproteobacteria,3K3Z8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Ubiquinone biosynthesis protein COQ7	-	-	-	ko:K06134	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00128	R04984,R08775	RC01254	ko00000,ko00001,ko00002,ko01000	-	-	-	COQ7
SX3_k127_3573856_28	1297865.APJD01000020_gene61	1.167e-93	308.0	COG0054@1|root,COG0054@2|Bacteria,1RD9J@1224|Proteobacteria,2U9IZ@28211|Alphaproteobacteria,3JSGU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin	ribH	GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.78	ko:K00794	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R04457	RC00960	ko00000,ko00001,ko00002,ko01000	-	-	-	DMRL_synthase
SX3_k127_3573856_27	1297865.APJD01000020_gene62	1.222e-98	327.0	COG0781@1|root,COG0781@2|Bacteria,1RHFZ@1224|Proteobacteria,2UBQA@28211|Alphaproteobacteria,3JWKB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons	nusB	-	-	ko:K03625	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	NusB
SX3_k127_3573856_11	1297865.APJD01000020_gene63	2.251e-206	643.0	COG0611@1|root,COG0611@2|Bacteria,1MU9X@1224|Proteobacteria,2TTI6@28211|Alphaproteobacteria,3JQYI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1	thiL	-	2.7.4.16	ko:K00946	ko00730,ko01100,map00730,map01100	M00127	R00617	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
SX3_k127_3573856_0	1297865.APJD01000020_gene64	0.0	1309.0	COG3808@1|root,COG3808@2|Bacteria,1MUQ3@1224|Proteobacteria,2TR9G@28211|Alphaproteobacteria,3JUCV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force	hppA	-	3.6.1.1	ko:K15987	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	3.A.10.1	-	-	H_PPase
SX3_k127_3573856_34	1297865.APJD01000020_gene65	2.438e-19	90.0	2C6NQ@1|root,302AQ@2|Bacteria,1NCEA@1224|Proteobacteria,2UHZD@28211|Alphaproteobacteria,3K1A7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3573856_14	1297865.APJD01000020_gene66	4.405e-203	646.0	COG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2U1G0@28211|Alphaproteobacteria,3JSNV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	MA20_36755	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_3573856_29	172088.AUGA01000017_gene2356	5.043e-92	304.0	COG2913@1|root,COG2913@2|Bacteria,1RHYM@1224|Proteobacteria,2UBU9@28211|Alphaproteobacteria,3JV18@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	SmpA / OmlA family	MA20_36760	-	-	-	-	-	-	-	-	-	-	-	SmpA_OmlA
SX3_k127_3573856_24	1230476.C207_04961	2.852e-102	342.0	COG5452@1|root,COG5452@2|Bacteria,1N12T@1224|Proteobacteria,2UCES@28211|Alphaproteobacteria,3JRTC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ubiquinol-cytochrome C chaperone	-	-	-	ko:K17662	-	-	-	-	ko00000,ko03029	-	-	-	Ubiq_cyt_C_chap
SX3_k127_3573856_22	1297865.APJD01000020_gene69	9.129e-121	395.0	COG1399@1|root,COG1399@2|Bacteria,1N7C2@1224|Proteobacteria,2UC4J@28211|Alphaproteobacteria,3JTU8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized ACR, COG1399	-	-	-	ko:K07040	-	-	-	-	ko00000	-	-	-	DUF177
SX3_k127_3573856_9	1297865.APJD01000020_gene70	1.381e-213	666.0	COG0416@1|root,COG0416@2|Bacteria,1MVM3@1224|Proteobacteria,2TR53@28211|Alphaproteobacteria,3JU5X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA	plsX	-	2.3.1.15	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FA_synthesis
SX3_k127_3573856_13	1230476.C207_04964	4.601e-204	636.0	COG0332@1|root,COG0332@2|Bacteria,1MU9N@1224|Proteobacteria,2TR60@28211|Alphaproteobacteria,3JR9U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids	fabH	-	2.3.1.180	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	M00082,M00083	R10707	RC00004,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACP_syn_III,ACP_syn_III_C
SX3_k127_3573856_30	1298867.AUES01000004_gene596	1.501e-67	231.0	COG0776@1|root,COG0776@2|Bacteria,1RH5Z@1224|Proteobacteria,2UCDG@28211|Alphaproteobacteria,3JYSB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	himA	-	-	ko:K04764	-	-	-	-	ko00000,ko03032,ko03036,ko03400	-	-	-	Bac_DNA_binding
SX3_k127_3573856_21	1297865.APJD01000020_gene73	6.836e-122	391.0	COG0789@1|root,COG0789@2|Bacteria,1RGYB@1224|Proteobacteria,2U9A5@28211|Alphaproteobacteria,3JQMB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, mercury resistance	merR	-	-	-	-	-	-	-	-	-	-	-	MerR_1
SX3_k127_3573856_8	1297865.APJD01000020_gene74	9.957e-219	680.0	COG2041@1|root,COG2041@2|Bacteria,1N9NH@1224|Proteobacteria,2UGW7@28211|Alphaproteobacteria,3K5HS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_molyb
SX3_k127_3573856_25	1297865.APJD01000020_gene75	6.264e-100	327.0	COG1846@1|root,COG1846@2|Bacteria,1R3ZX@1224|Proteobacteria,2TR9P@28211|Alphaproteobacteria,3JV20@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	MA20_36835	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_3573856_2	1297865.APJD01000020_gene76	0.0	1043.0	COG3203@1|root,COG3203@2|Bacteria,1MXN6@1224|Proteobacteria,2TSH7@28211|Alphaproteobacteria,3JQSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	ropAch1	-	-	-	-	-	-	-	-	-	-	-	Porin_2
SX3_k127_3573856_32	172088.AUGA01000033_gene4546	9.007e-37	141.0	2AH0T@1|root,3179Q@2|Bacteria,1N62E@1224|Proteobacteria,2UBXN@28211|Alphaproteobacteria,3K0FZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3573856_10	1297865.APJD01000020_gene78	5.794e-210	654.0	COG1028@1|root,COG1028@2|Bacteria,1QTUD@1224|Proteobacteria,2TWT3@28211|Alphaproteobacteria,3K6NW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_3573856_26	1297865.APJD01000020_gene79	1.107e-99	326.0	COG5352@1|root,COG5352@2|Bacteria,1R3ZJ@1224|Proteobacteria,2TSMW@28211|Alphaproteobacteria,3JX9H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GcrA cell cycle regulator	-	-	-	ko:K13583	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	GcrA
SX3_k127_3573856_33	398525.KB900701_gene5333	4.506e-35	134.0	2C87S@1|root,348GR@2|Bacteria,1N1MG@1224|Proteobacteria,2UCQU@28211|Alphaproteobacteria,3K02R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	QU41_33360	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3573856_1	1297865.APJD01000020_gene81	0.0	1218.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JSR7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_3573856_12	1297865.APJD01000020_gene82	1.27e-205	656.0	COG2421@1|root,COG2421@2|Bacteria,1MXKY@1224|Proteobacteria,2TSVA@28211|Alphaproteobacteria,3JSXD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Acetamidase/Formamidase family	MA20_36855	-	-	-	-	-	-	-	-	-	-	-	FmdA_AmdA
SX3_k127_3573856_16	1297865.APJD01000020_gene83	9.772e-163	513.0	COG1434@1|root,COG1434@2|Bacteria,1MVW8@1224|Proteobacteria,2U6XK@28211|Alphaproteobacteria,3JVS4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DUF218 domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF218
SX3_k127_3573856_15	1297865.APJD01000020_gene84	3.493e-171	538.0	COG2043@1|root,COG2043@2|Bacteria,1NR18@1224|Proteobacteria,2TVGP@28211|Alphaproteobacteria,3JU0D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised ArCR, COG2043	MA20_36865	-	-	-	-	-	-	-	-	-	-	-	DUF169
SX3_k127_3573856_4	1297865.APJD01000020_gene85	1.634e-257	794.0	COG3268@1|root,COG3268@2|Bacteria,1MVI3@1224|Proteobacteria,2TV1G@28211|Alphaproteobacteria,3JR52@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Saccharopine dehydrogenase NADP binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Sacchrp_dh_NADP
SX3_k127_3573856_5	398525.KB900701_gene5327	7.715e-255	787.0	COG0654@1|root,COG0654@2|Bacteria,1MWWT@1224|Proteobacteria,2TUGT@28211|Alphaproteobacteria,3JRKG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	MA20_36880	-	1.14.13.1,1.14.13.113,1.14.13.114	ko:K00480,ko:K14974,ko:K16839	ko00230,ko00621,ko00624,ko00626,ko00760,ko01100,ko01120,ko01220,map00230,map00621,map00624,map00626,map00760,map01100,map01120,map01220	M00546,M00622	R00818,R05632,R06915,R06936,R06939,R08764,R09514	RC00115,RC00389,RC02551	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_3573856_31	113395.AXAI01000004_gene4385	3.413e-66	229.0	COG1846@1|root,COG1846@2|Bacteria,1N6YD@1224|Proteobacteria,2U0SG@28211|Alphaproteobacteria,3JSZ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	MA20_36885	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_3573856_3	1297865.APJD01000020_gene88	3.864e-267	824.0	COG3307@1|root,COG3307@2|Bacteria,1MWJM@1224|Proteobacteria,2TRG6@28211|Alphaproteobacteria,3JUWK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	-O-antigen	MA20_36890	-	-	-	-	-	-	-	-	-	-	-	Wzy_C
SX3_k127_3573856_17	1297865.APJD01000020_gene89	5.071e-161	507.0	COG2148@1|root,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,2TRZA@28211|Alphaproteobacteria,3JSJ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	CoA-binding domain	wcaJ	-	-	ko:K03606,ko:K20997	ko02025,ko05111,map02025,map05111	-	-	-	ko00000,ko00001	-	-	-	Bac_transf,CoA_binding_3
SX3_k127_3573856_18	1297865.APJD01000020_gene89	4.06e-155	493.0	COG2148@1|root,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,2TRZA@28211|Alphaproteobacteria,3JSJ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	CoA-binding domain	wcaJ	-	-	ko:K03606,ko:K20997	ko02025,ko05111,map02025,map05111	-	-	-	ko00000,ko00001	-	-	-	Bac_transf,CoA_binding_3
SX3_k127_3573856_6	1297865.APJD01000020_gene90	1.159e-243	753.0	COG0438@1|root,COG0438@2|Bacteria,1MVKK@1224|Proteobacteria,2TSHP@28211|Alphaproteobacteria,3JTSD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	glycosyl transferase group 1	MA20_36900	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_3573856_23	1230476.C207_04984	2.588e-116	377.0	COG1596@1|root,COG1596@2|Bacteria,1MXYS@1224|Proteobacteria,2U93S@28211|Alphaproteobacteria,3JWHE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Polysaccharide biosynthesis/export protein	gumB	-	-	ko:K01991	ko02026,map02026	-	-	-	ko00000,ko00001,ko02000	1.B.18	-	-	Poly_export,SLBB
SX3_k127_3585467_12	1297865.APJD01000009_gene2965	6.496e-67	228.0	COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2TTXX@28211|Alphaproteobacteria,3JRKX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	gltI	-	-	ko:K02030,ko:K10001	ko02010,ko02020,map02010,map02020	M00230,M00236	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.19,3.A.1.3.4	-	-	SBP_bac_3
SX3_k127_3585467_8	1297865.APJD01000009_gene2964	6.749e-151	478.0	COG0765@1|root,COG0765@2|Bacteria,1MUVX@1224|Proteobacteria,2TRAT@28211|Alphaproteobacteria,3JVGT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	MA20_06175	-	-	ko:K10003	ko02010,ko02020,map02010,map02020	M00230	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.19,3.A.1.3.4	-	-	BPD_transp_1
SX3_k127_3585467_9	1297865.APJD01000009_gene2963	2.944e-132	436.0	COG0765@1|root,COG0765@2|Bacteria,1MV3I@1224|Proteobacteria,2TQZ7@28211|Alphaproteobacteria,3JQXV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	gltK	-	-	ko:K02029,ko:K10002	ko02010,ko02020,map02010,map02020	M00230,M00236	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.19,3.A.1.3.4	-	-	BPD_transp_1
SX3_k127_3585467_7	1297865.APJD01000009_gene2962	6.199e-156	492.0	COG1126@1|root,COG1126@2|Bacteria,1MU9Q@1224|Proteobacteria,2TQX2@28211|Alphaproteobacteria,3JQQF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	gltL	-	3.6.3.21	ko:K02028,ko:K10004	ko02010,ko02020,map02010,map02020	M00230,M00236	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.19,3.A.1.3.4	-	-	ABC_tran
SX3_k127_3585467_6	1297865.APJD01000009_gene2961	3.266e-176	554.0	COG0115@1|root,COG0115@2|Bacteria,1MVAT@1224|Proteobacteria,2TR7R@28211|Alphaproteobacteria,3JSTN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Amino-transferase class IV	dat	-	2.6.1.21	ko:K00824	ko00310,ko00330,ko00360,ko00472,ko00473,ko01100,map00310,map00330,map00360,map00472,map00473,map01100	-	R01148,R01582,R02459,R02851,R02924,R05053	RC00006,RC00008,RC00025	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_4
SX3_k127_3585467_11	1297865.APJD01000009_gene2960	5.4e-90	298.0	COG2128@1|root,COG2128@2|Bacteria,1RD1K@1224|Proteobacteria,2U6ZZ@28211|Alphaproteobacteria,3JVNN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	MA20_06155	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_3585467_1	1297865.APJD01000009_gene2959	0.0	1021.0	COG0477@1|root,COG2814@2|Bacteria,1MU1I@1224|Proteobacteria,2TVXT@28211|Alphaproteobacteria,3JTJC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_06150	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
SX3_k127_3585467_3	398525.KB900701_gene2624	7.078e-219	688.0	COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,2TS39@28211|Alphaproteobacteria,3JS4E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Biotin-lipoyl like	MA20_06145	-	-	ko:K03543	-	M00701	-	-	ko00000,ko00002,ko02000	8.A.1.1	-	-	Biotin_lipoyl_2,HlyD_D23
SX3_k127_3585467_5	1297865.APJD01000009_gene2957	5.96e-197	614.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2TRIG@28211|Alphaproteobacteria,3JR80@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009987,GO:0010212,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:2000112,GO:2001141	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3585467_4	1297865.APJD01000009_gene2956	5.372e-202	632.0	COG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria,3JV6C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_3585467_13	1297865.APJD01000009_gene2955	9.568e-35	133.0	2EGF3@1|root,33A73@2|Bacteria,1N9KR@1224|Proteobacteria,2UGXF@28211|Alphaproteobacteria,3K1D7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3311)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3311
SX3_k127_3585467_2	1157708.KB907452_gene3921	1.835e-233	731.0	COG0591@1|root,COG0591@2|Bacteria,1MWX6@1224|Proteobacteria,2W90W@28216|Betaproteobacteria,4AHZ1@80864|Comamonadaceae	28216|Betaproteobacteria	E	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family	-	-	-	ko:K03307	-	-	-	-	ko00000	2.A.21	-	-	SSF
SX3_k127_3585467_0	1297865.APJD01000009_gene2953	0.0	2342.0	COG1014@1|root,COG4231@1|root,COG1014@2|Bacteria,COG4231@2|Bacteria,1MUKS@1224|Proteobacteria,2TSHH@28211|Alphaproteobacteria,3JVSS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Pyruvate ferredoxin/flavodoxin oxidoreductase	MA20_06130	-	1.2.7.8	ko:K04090	-	-	-	-	br01601,ko00000,ko01000	-	-	-	POR,TPP_enzyme_C
SX3_k127_3585467_10	1297865.APJD01000009_gene2952	2.865e-91	300.0	COG1522@1|root,COG1522@2|Bacteria,1R7SW@1224|Proteobacteria,2TW1G@28211|Alphaproteobacteria,3JV2B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	MA20_06125	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_24
SX3_k127_3585467_14	224911.27354970	8.907e-08	55.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_3586484_7	1230476.C207_00464	3.894e-28	116.0	COG2070@1|root,COG2070@2|Bacteria,1MU0U@1224|Proteobacteria,2TRZS@28211|Alphaproteobacteria,3JXCN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	-	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_3586484_2	1297865.APJD01000007_gene2054	2.168e-164	517.0	COG1024@1|root,COG1024@2|Bacteria,1MWZC@1224|Proteobacteria,2TRIH@28211|Alphaproteobacteria,3JXTE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_3586484_3	1297865.APJD01000007_gene2053	8.397e-164	517.0	COG1028@1|root,COG1028@2|Bacteria,1MU32@1224|Proteobacteria,2TUYY@28211|Alphaproteobacteria,3JUT8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_3586484_0	1297865.APJD01000007_gene2052	0.0	1060.0	COG0318@1|root,COG0318@2|Bacteria,1QCB3@1224|Proteobacteria,2UPUU@28211|Alphaproteobacteria,3K3RB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_3586484_4	1230476.C207_00460	8.761e-121	389.0	COG1309@1|root,COG1309@2|Bacteria,1N6HV@1224|Proteobacteria,2UEX2@28211|Alphaproteobacteria,3K0FR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	BetI-type transcriptional repressor, C-terminal	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_6,TetR_N
SX3_k127_3586484_5	1230476.C207_00459	5.328e-71	242.0	COG1545@1|root,COG1545@2|Bacteria,1NEYJ@1224|Proteobacteria,2UT8K@28211|Alphaproteobacteria,3K4B5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DUF35 OB-fold domain, acyl-CoA-associated	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3586484_1	1297865.APJD01000007_gene2049	1.651e-241	747.0	COG0183@1|root,COG0183@2|Bacteria,1R6QE@1224|Proteobacteria,2U227@28211|Alphaproteobacteria,3JVS0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Thiolase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_3586484_6	1297865.APJD01000007_gene2048	1.363e-68	233.0	COG1309@1|root,COG1309@2|Bacteria,1QYD4@1224|Proteobacteria,2TVBJ@28211|Alphaproteobacteria,3JX56@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_3600665_2	1297865.APJD01000007_gene1988	2.088e-175	550.0	COG4221@1|root,COG4221@2|Bacteria,1PWXN@1224|Proteobacteria,2U2SU@28211|Alphaproteobacteria,3JTFM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4336
SX3_k127_3600665_0	1297865.APJD01000007_gene1987	1.329e-271	838.0	COG1376@1|root,COG1376@2|Bacteria,1MXZM@1224|Proteobacteria,2TSBH@28211|Alphaproteobacteria,3JU61@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	MA20_01325	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_3600665_3	1297865.APJD01000007_gene1986	1.444e-145	464.0	2A5EB@1|root,30U43@2|Bacteria,1NZMR@1224|Proteobacteria,2TUEH@28211|Alphaproteobacteria,3JS0X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3600665_1	1297865.APJD01000007_gene1985	2.558e-188	588.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_3600665_4	1297865.APJD01000007_gene1984	2.36e-87	288.0	COG0607@1|root,COG0607@2|Bacteria,1RHQZ@1224|Proteobacteria,2U9DZ@28211|Alphaproteobacteria,3JY2J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	MA20_01310	-	-	-	-	-	-	-	-	-	-	-	Rhodanese
SX3_k127_3611934_2	1037409.BJ6T_26380	1.965e-17	85.0	29FC2@1|root,3029R@2|Bacteria,1NGRV@1224|Proteobacteria,2UJN0@28211|Alphaproteobacteria,3K1UJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	F subunit of K+-transporting ATPase (Potass_KdpF)	QU41_31500	-	-	-	-	-	-	-	-	-	-	-	Potass_KdpF
SX3_k127_3611934_0	1297865.APJD01000006_gene4385	0.0	1118.0	COG2060@1|root,COG2060@2|Bacteria,1MV1K@1224|Proteobacteria,2TSIJ@28211|Alphaproteobacteria,3JSEK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane	kdpA	GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030955,GO:0031420,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132	3.6.3.12	ko:K01546	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	3.A.3.7	-	-	KdpA
SX3_k127_3611934_1	1297865.APJD01000006_gene4386	4.846e-303	931.0	COG2216@1|root,COG2216@2|Bacteria,1MU7D@1224|Proteobacteria,2TREM@28211|Alphaproteobacteria,3JQUQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system	kdpB	-	3.6.3.12	ko:K01547	ko02020,map02020	-	-	-	ko00000,ko00001,ko01000	3.A.3.7	-	-	E1-E2_ATPase,Hydrolase
SX3_k127_3612896_13	1297865.APJD01000007_gene1791	4.494e-46	169.0	COG2721@1|root,COG2721@2|Bacteria,1MU9V@1224|Proteobacteria,2U0QN@28211|Alphaproteobacteria,3JUSN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	D-galactarate dehydratase / Altronate hydrolase, C terminus	garD	-	4.2.1.42	ko:K01708	ko00053,map00053	-	R05608	RC00543	ko00000,ko00001,ko01000	-	-	-	GD_AH_C,SAF
SX3_k127_3612896_0	1297865.APJD01000007_gene1792	3.684e-313	968.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JUV3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	MA20_08220	-	-	ko:K22187	ko00040,map00040	-	R11768	RC00080	ko00000,ko00001,ko01000	-	-	-	Aldedh
SX3_k127_3612896_1	1297865.APJD01000007_gene1793	8.914e-306	939.0	COG4948@1|root,COG4948@2|Bacteria,1NAKW@1224|Proteobacteria,2U12J@28211|Alphaproteobacteria,3JTBB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	gudD	-	4.2.1.40	ko:K01706	ko00053,ko01100,map00053,map01100	-	R02752,R08056	RC00543	ko00000,ko00001,ko01000	-	-	-	MR_MLE_C,MR_MLE_N
SX3_k127_3612896_7	1230476.C207_00218	5.677e-197	616.0	COG0329@1|root,COG0329@2|Bacteria,1MUNF@1224|Proteobacteria,2TS25@28211|Alphaproteobacteria,3JSVG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EM	aldaric acid catabolic process	kdgD	-	4.2.1.41	ko:K01707	ko00053,ko01100,map00053,map01100	-	R02279	RC00678	ko00000,ko00001,ko01000	-	-	-	DHDPS
SX3_k127_3612896_9	1230476.C207_00219	6.48e-188	605.0	COG0583@1|root,COG0583@2|Bacteria,1MXRP@1224|Proteobacteria,2TRVK@28211|Alphaproteobacteria,3JU75@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR family	MA20_08235	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3612896_2	1297865.APJD01000007_gene1796	3.089e-284	876.0	COG2271@1|root,COG2271@2|Bacteria,1MVPS@1224|Proteobacteria,2TTHW@28211|Alphaproteobacteria,3JT33@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PFAM Major Facilitator Superfamily	gudP	-	-	ko:K03535	-	-	-	-	ko00000,ko02000	2.A.1.14.1	-	-	MFS_1
SX3_k127_3612896_4	1297865.APJD01000007_gene1797	1.205e-228	708.0	COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,2TRRH@28211|Alphaproteobacteria,3JR8M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	BQ	Histone deacetylase domain	MA20_09840	-	-	-	-	-	-	-	-	-	-	-	Hist_deacetyl
SX3_k127_3612896_6	1297865.APJD01000007_gene1798	2.2e-199	622.0	COG0673@1|root,COG0673@2|Bacteria,1MW0Q@1224|Proteobacteria,2TQR0@28211|Alphaproteobacteria,3JUR7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase family, NAD-binding Rossmann fold	-	-	1.1.1.48	ko:K00035	ko00052,ko01100,map00052,map01100	-	R01094,R01097	RC00161	ko00000,ko00001,ko01000	-	-	-	GFO_IDH_MocA
SX3_k127_3612896_3	1297865.APJD01000007_gene1799	4.014e-235	728.0	COG2017@1|root,COG2017@2|Bacteria,1MVMN@1224|Proteobacteria,2TTJ7@28211|Alphaproteobacteria,3JVAG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Converts alpha-aldose to the beta-anomer	-	-	5.1.3.3	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	M00632	R01602,R10619	RC00563	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldose_epim
SX3_k127_3612896_5	1297865.APJD01000007_gene1800	2.985e-203	633.0	COG3386@1|root,COG3386@2|Bacteria,1MWTR@1224|Proteobacteria,2TV5X@28211|Alphaproteobacteria,3JUAY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	SMP-30/Gluconolaconase/LRE-like region	-	-	3.1.1.15	ko:K13874,ko:K22217	ko00053,ko01100,map00053,map01100	-	R02526	RC00537	ko00000,ko00001,ko01000	-	-	-	SGL
SX3_k127_3612896_11	1297865.APJD01000007_gene1801	1.917e-152	482.0	COG1309@1|root,COG1309@2|Bacteria,1RDIM@1224|Proteobacteria,2VEVK@28211|Alphaproteobacteria,3JVBT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_26620	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_3612896_8	1297865.APJD01000007_gene1802	6.229e-193	602.0	COG0715@1|root,COG0715@2|Bacteria,1PKQN@1224|Proteobacteria,2TSRB@28211|Alphaproteobacteria,3JUQJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	4,5-dihydroxyphthalate decarboxylase	MA20_26650	-	-	-	-	-	-	-	-	-	-	-	NMT1
SX3_k127_3612896_10	1297865.APJD01000007_gene1803	4.4e-187	595.0	COG2084@1|root,COG2084@2|Bacteria,1MX8V@1224|Proteobacteria,2TVBS@28211|Alphaproteobacteria,3JTCY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Domain of unknown function (DUF1932)	MA20_26655	-	-	-	-	-	-	-	-	-	-	-	DUF1932,NAD_binding_2
SX3_k127_3612896_12	1297865.APJD01000007_gene1804	4.956e-134	428.0	COG1028@1|root,COG1028@2|Bacteria,1MVQW@1224|Proteobacteria,2TUA2@28211|Alphaproteobacteria,3JUGJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_365581_2	1297865.APJD01000008_gene5577	0.0	1007.0	COG3670@1|root,COG3670@2|Bacteria,1MY1X@1224|Proteobacteria,2TS7A@28211|Alphaproteobacteria,3JTX3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Retinal pigment epithelial membrane protein	MA20_08640	-	-	ko:K11159	-	-	-	-	ko00000	-	-	-	RPE65
SX3_k127_365581_12	1230476.C207_00733	3.71e-132	427.0	COG1309@1|root,COG1309@2|Bacteria,1MUUY@1224|Proteobacteria,2TQY0@28211|Alphaproteobacteria,3JU14@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WHG domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
SX3_k127_365581_13	1297865.APJD01000008_gene5575	9.073e-122	391.0	2A66I@1|root,30UZ1@2|Bacteria,1R3XX@1224|Proteobacteria,2U3RN@28211|Alphaproteobacteria,3JSZ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_365581_11	1297865.APJD01000008_gene5574	8.981e-134	428.0	COG2940@1|root,COG2940@2|Bacteria,1MWFB@1224|Proteobacteria,2U05I@28211|Alphaproteobacteria,3JQPI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	-	-	-	ko:K07117	-	-	-	-	ko00000	-	-	-	SET
SX3_k127_365581_17	1297865.APJD01000008_gene5573	1.774e-85	284.0	COG1959@1|root,COG1959@2|Bacteria,1N05H@1224|Proteobacteria,2UBZM@28211|Alphaproteobacteria,3JYF3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	ko:K13771	ko05132,map05132	-	-	-	ko00000,ko00001,ko03000	-	-	-	Rrf2
SX3_k127_365581_14	1297865.APJD01000008_gene5572	1.174e-104	340.0	COG2346@1|root,COG2346@2|Bacteria,1MZSM@1224|Proteobacteria,2UCHK@28211|Alphaproteobacteria,3JV8R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial-like globin	MA20_34335	-	-	ko:K06886	-	-	-	-	ko00000	-	-	-	Bac_globin
SX3_k127_365581_18	1297865.APJD01000008_gene5571	9.64e-68	233.0	2BW2J@1|root,331CU@2|Bacteria,1N7GK@1224|Proteobacteria,2U7KS@28211|Alphaproteobacteria,3JYVT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_365581_21	1297865.APJD01000008_gene5570	1.6e-41	153.0	2AD2G@1|root,312QQ@2|Bacteria,1N47Z@1224|Proteobacteria,2UDHQ@28211|Alphaproteobacteria,3K01S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_365581_8	1297865.APJD01000008_gene5569	3.183e-175	550.0	COG1396@1|root,COG1396@2|Bacteria,1MWUC@1224|Proteobacteria,2TU04@28211|Alphaproteobacteria,3JTW2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	MA20_08830	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
SX3_k127_365581_9	1297865.APJD01000008_gene5568	4.843e-140	445.0	COG2761@1|root,COG2761@2|Bacteria,1NXUB@1224|Proteobacteria,2TRJ6@28211|Alphaproteobacteria,3JS82@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	DSBA-like thioredoxin domain	dsb	-	-	-	-	-	-	-	-	-	-	-	DSBA
SX3_k127_365581_10	1297865.APJD01000008_gene5567	1.05e-138	447.0	2E5W4@1|root,330K6@2|Bacteria,1N893@1224|Proteobacteria,2UGUZ@28211|Alphaproteobacteria,3JRW1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NIPSNAP	-	-	-	-	-	-	-	-	-	-	-	-	NIPSNAP
SX3_k127_365581_7	1297865.APJD01000008_gene5566	1.497e-186	582.0	COG1305@1|root,COG1305@2|Bacteria,1R9WH@1224|Proteobacteria,2U80B@28211|Alphaproteobacteria,3JZ3A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Transglutaminase-like superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Transglut_core
SX3_k127_365581_5	1297865.APJD01000008_gene5565	1.848e-241	753.0	COG5653@1|root,COG5653@2|Bacteria,1N3Z9@1224|Proteobacteria,2TRT5@28211|Alphaproteobacteria,3JUA5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_6
SX3_k127_365581_1	1297865.APJD01000008_gene5564	0.0	1073.0	COG3250@1|root,COG5297@1|root,COG3250@2|Bacteria,COG5297@2|Bacteria,1MX46@1224|Proteobacteria	1224|Proteobacteria	G	Alpha-L-arabinofuranosidase B, catalytic	-	-	-	-	-	-	-	-	-	-	-	-	AbfB,ArabFuran-catal
SX3_k127_365581_6	1297865.APJD01000008_gene5563	3.226e-195	610.0	COG2171@1|root,COG2171@2|Bacteria,1MYKK@1224|Proteobacteria,2U570@28211|Alphaproteobacteria,3JX3X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2- amino-6-oxopimelate using succinyl-CoA	-	-	2.3.1.117	ko:K00674	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R04365	RC00004,RC01136	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep_2,THDPS_M
SX3_k127_365581_16	1297865.APJD01000008_gene5562	7.325e-87	287.0	2A6V8@1|root,30VPR@2|Bacteria,1RAWU@1224|Proteobacteria,2U5H7@28211|Alphaproteobacteria,3JYBF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_365581_20	1230476.C207_00720	1.834e-42	156.0	2AFD0@1|root,315CR@2|Bacteria,1ND84@1224|Proteobacteria,2UGN1@28211|Alphaproteobacteria,3K162@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_365581_4	1297865.APJD01000008_gene5560	1.32e-300	923.0	COG4249@1|root,COG4249@2|Bacteria,1R3WZ@1224|Proteobacteria,2TUBK@28211|Alphaproteobacteria,3JS5H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Caspase domain	MA20_02090	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
SX3_k127_365581_0	1297865.APJD01000008_gene5559	0.0	1433.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TQMV@28211|Alphaproteobacteria,3JSPM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	-	-	1.1.5.2	ko:K00117	ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130	-	R06620	RC00066	ko00000,ko00001,ko01000	-	-	-	PQQ,PQQ_2
SX3_k127_365581_19	1297865.APJD01000008_gene5558	2.666e-55	198.0	2EC4C@1|root,33636@2|Bacteria,1RIT8@1224|Proteobacteria,2U9YQ@28211|Alphaproteobacteria,3JZH9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HdeA/HdeB family	MA20_08880	-	-	ko:K19778	-	-	-	-	ko00000,ko03110	-	-	-	HdeA
SX3_k127_365581_15	1297865.APJD01000008_gene5557	2.192e-94	310.0	COG2050@1|root,COG2050@2|Bacteria,1MYM3@1224|Proteobacteria,2U5K2@28211|Alphaproteobacteria,3JR03@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	MA20_08885	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_365581_3	1297865.APJD01000008_gene5556	6.208e-303	928.0	COG0154@1|root,COG0154@2|Bacteria,1MWWQ@1224|Proteobacteria,2TSN9@28211|Alphaproteobacteria,3JS0D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the amidase family	MA20_04710	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_3658321_14	1297865.APJD01000002_gene4025	1.237e-117	380.0	2CU7A@1|root,32SUR@2|Bacteria,1N15Z@1224|Proteobacteria,2UBPY@28211|Alphaproteobacteria,3JZY5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3658321_16	1297865.APJD01000002_gene4026	2.479e-102	337.0	COG0454@1|root,COG0456@2|Bacteria,1QU9D@1224|Proteobacteria,2TWZF@28211|Alphaproteobacteria,3JYDP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FR47-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_3658321_17	1297865.APJD01000002_gene4027	3.41e-94	318.0	COG3837@1|root,COG3837@2|Bacteria,1R9WZ@1224|Proteobacteria,2U6K6@28211|Alphaproteobacteria,3JXTD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF861)	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_3658321_20	1297865.APJD01000002_gene4028	1.278e-36	138.0	2AES8@1|root,314P1@2|Bacteria,1NB0G@1224|Proteobacteria,2UG80@28211|Alphaproteobacteria,3K14Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3658321_15	1192124.LIG30_3309	2.982e-114	377.0	COG0061@1|root,COG0061@2|Bacteria,1NBI3@1224|Proteobacteria,2VP1Y@28216|Betaproteobacteria	28216|Betaproteobacteria	G	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3658321_8	1297865.APJD01000002_gene4030	1.629e-208	650.0	COG0330@1|root,COG0330@2|Bacteria,1PEW9@1224|Proteobacteria,2TVA5@28211|Alphaproteobacteria,3JWCI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	SPFH domain / Band 7 family	-	-	-	-	-	-	-	-	-	-	-	-	Band_7
SX3_k127_3658321_10	1297865.APJD01000002_gene4031	1.722e-152	484.0	COG1051@1|root,COG1051@2|Bacteria,1QTT4@1224|Proteobacteria,2TWST@28211|Alphaproteobacteria,3JUB4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	hydrolase	-	-	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	NUDIX
SX3_k127_3658321_7	1297865.APJD01000002_gene4032	4.32e-215	670.0	COG0510@1|root,COG0510@2|Bacteria,1PDP6@1224|Proteobacteria,2VBSW@28211|Alphaproteobacteria,3JXTF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Choline/ethanolamine kinase	-	-	-	-	-	-	-	-	-	-	-	-	APH
SX3_k127_3658321_11	1297865.APJD01000002_gene4033	1.075e-145	463.0	COG1802@1|root,COG1802@2|Bacteria,1MY2M@1224|Proteobacteria,2U3FK@28211|Alphaproteobacteria,3K601@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_3658321_4	1297865.APJD01000002_gene4034	5e-324	994.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JRKR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_3658321_2	1297865.APJD01000002_gene4035	0.0	1137.0	COG0028@1|root,COG0028@2|Bacteria,1MXDW@1224|Proteobacteria,2TT9X@28211|Alphaproteobacteria,3JTI9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Belongs to the TPP enzyme family	-	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_3658321_19	1230476.C207_01667	8.881e-70	239.0	COG2847@1|root,COG2847@2|Bacteria,1RK52@1224|Proteobacteria,2UA1C@28211|Alphaproteobacteria,3JZCA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Copper chaperone PCu(A)C	-	-	-	-	-	-	-	-	-	-	-	-	PCuAC
SX3_k127_3658321_0	1297865.APJD01000002_gene4037	0.0	1237.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3JWDX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	-	-	-	-	-	-	-	-	-	-	-	-	PQQ,PQQ_2
SX3_k127_3658321_13	1297865.APJD01000002_gene4038	1.075e-117	383.0	COG2010@1|root,COG2010@2|Bacteria,1R7BD@1224|Proteobacteria,2U52C@28211|Alphaproteobacteria,3JX9B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C,Cytochrome_CBB3
SX3_k127_3658321_12	1297865.APJD01000002_gene4039	2.596e-132	426.0	2EC85@1|root,3366N@2|Bacteria,1PMHT@1224|Proteobacteria,2U2BS@28211|Alphaproteobacteria,3JX4E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3658321_9	1297865.APJD01000002_gene4040	4.678e-194	619.0	COG1414@1|root,COG1414@2|Bacteria,1RFSY@1224|Proteobacteria,2U3M4@28211|Alphaproteobacteria,3JZH2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	IclR helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR,IclR
SX3_k127_3658321_1	1297865.APJD01000002_gene4041	0.0	1180.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQU2@28211|Alphaproteobacteria,3JS7A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M
SX3_k127_3658321_6	1297865.APJD01000002_gene4042	6.804e-256	793.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3JUNA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_3658321_3	1297865.APJD01000002_gene4043	0.0	1127.0	COG0515@1|root,COG0631@1|root,COG0515@2|Bacteria,COG0631@2|Bacteria,1MV1P@1224|Proteobacteria,2TQTS@28211|Alphaproteobacteria,3JWJC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KLT	Serine/threonine phosphatases, family 2C, catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	PP2C_2,Pkinase
SX3_k127_3658321_5	1297865.APJD01000002_gene4044	7.034e-271	836.0	COG2223@1|root,COG2223@2|Bacteria,1MU27@1224|Proteobacteria,2TSXZ@28211|Alphaproteobacteria,3JUV6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Major Facilitator Superfamily	narK	-	-	ko:K02575	ko00910,map00910	M00615	-	-	ko00000,ko00001,ko00002,ko02000	2.A.1.8	-	-	MFS_1
SX3_k127_3658321_18	1297865.APJD01000002_gene4045	1.418e-88	295.0	COG1251@1|root,COG1251@2|Bacteria,1MW58@1224|Proteobacteria,2TS8I@28211|Alphaproteobacteria,3JRH5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Pyridine nucleotide-disulphide oxidoreductase	nirB	-	1.2.1.58,1.7.1.15	ko:K00362,ko:K18359	ko00360,ko00910,ko01120,map00360,map00910,map01120	M00530	R00787,R02450	RC00004,RC00176,RC02860	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_BFD,NIR_SIR,NIR_SIR_ferr,Pyr_redox_2,Rieske_2
SX3_k127_3670532_14	1297865.APJD01000014_gene846	3.823e-90	297.0	2DGBX@1|root,2ZVCE@2|Bacteria,1RBSZ@1224|Proteobacteria,2U5Z9@28211|Alphaproteobacteria,3JYI7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3670532_21	1297865.APJD01000014_gene847	3.734e-38	143.0	2BHQH@1|root,32BTT@2|Bacteria,1P44G@1224|Proteobacteria,2UY69@28211|Alphaproteobacteria,3K5P9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3670532_19	1297865.APJD01000014_gene848	1.487e-39	149.0	28YT2@1|root,2ZKKC@2|Bacteria,1N93U@1224|Proteobacteria,2UF4E@28211|Alphaproteobacteria,3K0XV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3670532_13	1297865.APJD01000014_gene849	2e-114	369.0	COG0663@1|root,COG0663@2|Bacteria,1RD76@1224|Proteobacteria,2U5GR@28211|Alphaproteobacteria,3JTNJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial transferase hexapeptide (six repeats)	MA20_32230	-	-	-	-	-	-	-	-	-	-	-	Hexapep
SX3_k127_3670532_16	1297865.APJD01000014_gene850	2.154e-61	212.0	2DYTB@1|root,32V60@2|Bacteria,1RHCB@1224|Proteobacteria,2U9FA@28211|Alphaproteobacteria,3JZS9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_32235	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3670532_10	1297865.APJD01000014_gene851	1.474e-151	484.0	2D6JA@1|root,32TME@2|Bacteria,1MXVJ@1224|Proteobacteria,2TQNP@28211|Alphaproteobacteria,3JT96@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3670532_20	172088.AUGA01000020_gene3512	1.089e-38	145.0	2E4B6@1|root,32Z6W@2|Bacteria,1N7QS@1224|Proteobacteria,2UFNH@28211|Alphaproteobacteria,3K055@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3126)	MA20_32250	-	-	-	-	-	-	-	-	-	-	-	DUF3126
SX3_k127_3670532_8	1297865.APJD01000014_gene853	3.248e-179	563.0	COG1045@1|root,COG1045@2|Bacteria,1MVFX@1224|Proteobacteria,2TQQ5@28211|Alphaproteobacteria,3JWAU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Serine acetyltransferase, N-terminal	cysE	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009001,GO:0009058,GO:0009069,GO:0009070,GO:0009314,GO:0009333,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016053,GO:0016407,GO:0016412,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019344,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234	2.3.1.30	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	M00021	R00586	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,SATase_N
SX3_k127_3670532_2	1297865.APJD01000014_gene854	0.0	1009.0	28MIW@1|root,2ZAVI@2|Bacteria,1N523@1224|Proteobacteria,2TSDJ@28211|Alphaproteobacteria,3JV6X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3670532_22	1194165.CAJF01000012_gene993	7.458e-21	102.0	COG0596@1|root,COG0596@2|Bacteria	2|Bacteria	S	hydrolase activity, acting on ester bonds	MA20_32265	-	1.11.1.10	ko:K00433	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
SX3_k127_3670532_7	1297865.APJD01000014_gene856	2.221e-220	686.0	2AS1Y@1|root,31HEF@2|Bacteria,1R2Y6@1224|Proteobacteria,2TRKR@28211|Alphaproteobacteria,3JRN9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3670532_17	1230476.C207_00545	2.904e-50	180.0	COG4391@1|root,COG4391@2|Bacteria,1MZNK@1224|Proteobacteria,2UD0H@28211|Alphaproteobacteria,3JZEI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Zinc-finger domain	MA20_32275	-	-	-	-	-	-	-	-	-	-	-	zf-CHCC
SX3_k127_3670532_5	1297865.APJD01000014_gene858	5.868e-256	790.0	COG0654@1|root,COG0654@2|Bacteria,1MWWT@1224|Proteobacteria,2TRZP@28211|Alphaproteobacteria,3JURF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	nah	-	1.14.13.1	ko:K00480	ko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220	-	R00818,R05632,R06915,R06936,R06939	RC00389	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3
SX3_k127_3670532_15	1297865.APJD01000014_gene859	3.607e-84	279.0	2A7S1@1|root,30WQY@2|Bacteria,1REME@1224|Proteobacteria,2U5BG@28211|Alphaproteobacteria,3JYTK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3670532_11	1297865.APJD01000014_gene860	1.698e-124	400.0	COG2184@1|root,COG2184@2|Bacteria,1R72A@1224|Proteobacteria,2U7ZB@28211|Alphaproteobacteria,3K12C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Filamentation induced by cAMP protein fic	-	-	-	ko:K04095	-	-	-	-	ko00000,ko03036	-	-	-	Fic
SX3_k127_3670532_1	1297865.APJD01000014_gene861	0.0	1065.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,2TR1M@28211|Alphaproteobacteria,3K32E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_4,PAS_7,Response_reg,dCache_1
SX3_k127_3670532_12	1297865.APJD01000014_gene862	2.596e-123	398.0	COG2197@1|root,COG2197@2|Bacteria,1RH96@1224|Proteobacteria,2UBPB@28211|Alphaproteobacteria,3K4IE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_3670532_9	1297865.APJD01000014_gene863	9.41e-164	518.0	COG3507@1|root,COG3507@2|Bacteria	2|Bacteria	G	Belongs to the glycosyl hydrolase 43 family	-	-	-	ko:K20276	ko02024,map02024	-	-	-	ko00000,ko00001	-	-	-	Glyco_hyd_101C,Glyco_hydro_101,Glyco_hydro_43,NPCBM,NPCBM_assoc,RicinB_lectin_2
SX3_k127_3670532_18	1297865.APJD01000014_gene864	3.664e-49	176.0	COG2199@1|root,COG3706@2|Bacteria,1MZS0@1224|Proteobacteria,2UDXA@28211|Alphaproteobacteria,3K0EJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	GGDEF domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_3670532_0	1297865.APJD01000014_gene865	0.0	1112.0	COG0747@1|root,COG0747@2|Bacteria,1MWBH@1224|Proteobacteria,2TTF4@28211|Alphaproteobacteria,3JT87@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_3670532_6	1230476.C207_00552	2.77e-241	751.0	COG0624@1|root,COG0624@2|Bacteria,1MUSU@1224|Proteobacteria,2TRTW@28211|Alphaproteobacteria,3JR23@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase dimerisation domain	MA20_32325	-	3.4.17.11	ko:K01295	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_3670532_3	1297865.APJD01000014_gene867	1.029e-293	903.0	COG0665@1|root,COG0665@2|Bacteria,1MVIZ@1224|Proteobacteria,2TRT9@28211|Alphaproteobacteria,3JSM9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	MA20_32330	-	1.4.5.1	ko:K00285	ko00360,map00360	-	R01374,R09493	RC00006,RC00025	ko00000,ko00001,ko01000	-	-	-	DAO
SX3_k127_3670532_4	1297865.APJD01000014_gene868	7.825e-290	893.0	COG0624@1|root,COG0624@2|Bacteria,1MW2W@1224|Proteobacteria,2TQYZ@28211|Alphaproteobacteria,3JX22@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase dimerisation domain	-	-	3.5.1.16	ko:K01438	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R00669,R09107	RC00064,RC00300	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_3671306_10	1297865.APJD01000033_gene7006	3.585e-91	301.0	COG2207@1|root,COG2207@2|Bacteria,1P4M5@1224|Proteobacteria,2TSQV@28211|Alphaproteobacteria,3JU83@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
SX3_k127_3671306_8	1297865.APJD01000033_gene7007	6.407e-130	414.0	COG1670@1|root,COG1670@2|Bacteria,1RD77@1224|Proteobacteria,2U851@28211|Alphaproteobacteria,3JVPR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Acetyltransferase (GNAT) domain	-	-	2.3.1.128	ko:K03790	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Acetyltransf_3
SX3_k127_3671306_4	1297865.APJD01000033_gene7008	7.579e-208	648.0	COG1741@1|root,COG1741@2|Bacteria,1MWIP@1224|Proteobacteria,2TRHR@28211|Alphaproteobacteria,3JSBB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the pirin family	MA20_23765	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin,Pirin_C
SX3_k127_3671306_5	1297865.APJD01000033_gene7009	1.997e-198	619.0	COG0152@1|root,COG0152@2|Bacteria,1MUR9@1224|Proteobacteria,2TS0T@28211|Alphaproteobacteria,3JRJ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	phosphoribosylaminoimidazole-succinocarboxamide synthase	purC2	GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.2.6	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04591	RC00064,RC00162	ko00000,ko00001,ko00002,ko01000	-	-	-	SAICAR_synt
SX3_k127_3671306_2	1297865.APJD01000033_gene7010	3.362e-231	716.0	COG1063@1|root,COG1063@2|Bacteria,1MZ0B@1224|Proteobacteria,2U2M9@28211|Alphaproteobacteria,3JZY8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Alcohol dehydrogenase GroES-like domain	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N
SX3_k127_3671306_6	1297865.APJD01000033_gene7011	1.955e-144	460.0	COG1024@1|root,COG1024@2|Bacteria,1NDT7@1224|Proteobacteria,2U2R9@28211|Alphaproteobacteria,3JWD5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_3671306_3	1297865.APJD01000033_gene7013	5.815e-231	716.0	COG2021@1|root,COG2021@2|Bacteria,1R4V6@1224|Proteobacteria,2TTJ8@28211|Alphaproteobacteria,3K3II@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	alpha/beta hydrolase fold	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_3671306_11	258594.RPA0628	1.17e-05	50.0	COG3409@1|root,COG5480@1|root,COG3409@2|Bacteria,COG5480@2|Bacteria,1P9ZA@1224|Proteobacteria,2TSTF@28211|Alphaproteobacteria,3JVQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF1036)	MA20_21840	-	-	-	-	-	-	-	-	-	-	-	DUF1036,PG_binding_1
SX3_k127_3671306_0	1297865.APJD01000033_gene7014	0.0	1421.0	COG0659@1|root,COG0659@2|Bacteria,1MVWV@1224|Proteobacteria,2TVDS@28211|Alphaproteobacteria,3JTMZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sulfate permease family	-	-	-	ko:K03321	-	-	-	-	ko00000,ko02000	2.A.53.3	-	-	STAS,Sulfate_transp,cNMP_binding
SX3_k127_3671306_1	1297865.APJD01000033_gene7015	1.772e-305	937.0	COG0665@1|root,COG0665@2|Bacteria,1R49W@1224|Proteobacteria,2TUH5@28211|Alphaproteobacteria,3JV6D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DAO
SX3_k127_3671306_9	398525.KB900701_gene1379	6.512e-129	416.0	COG1802@1|root,COG1802@2|Bacteria,1P2DT@1224|Proteobacteria,2TSI4@28211|Alphaproteobacteria,3K603@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_3671306_7	1297865.APJD01000033_gene7017	2.393e-143	456.0	COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2TTE3@28211|Alphaproteobacteria,3JVA1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	ko:K10001	ko02010,ko02020,map02010,map02020	M00230	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.19,3.A.1.3.4	-	-	SBP_bac_3
SX3_k127_3680347_0	1297865.APJD01000002_gene4114	2.026e-243	753.0	COG3173@1|root,COG3173@2|Bacteria,1R7XK@1224|Proteobacteria,2TTWB@28211|Alphaproteobacteria,3JSZR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ecdysteroid kinase	-	-	-	-	-	-	-	-	-	-	-	-	APH,EcKinase
SX3_k127_3680347_1	1297865.APJD01000002_gene4115	2.931e-219	681.0	COG0604@1|root,COG0604@2|Bacteria,1MU4N@1224|Proteobacteria,2TRDI@28211|Alphaproteobacteria,3JUIN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily	MA20_35420	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N_2
SX3_k127_3680347_2	1297865.APJD01000002_gene4116	5.786e-77	258.0	COG1733@1|root,COG1733@2|Bacteria,1MZ6G@1224|Proteobacteria,2UCP4@28211|Alphaproteobacteria,3JYQ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	MA20_35425	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_3709862_16	1297865.APJD01000011_gene6753	4.286e-105	340.0	COG3409@1|root,COG3409@2|Bacteria,1QSDM@1224|Proteobacteria,2U4B9@28211|Alphaproteobacteria,3JU8K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	PAN domain	-	-	-	-	-	-	-	-	-	-	-	-	PAN_4
SX3_k127_3709862_13	1297865.APJD01000011_gene6754	9.195e-124	399.0	COG3575@1|root,COG3575@2|Bacteria,1R5GH@1224|Proteobacteria,2U1BS@28211|Alphaproteobacteria,3JS3C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nucleotidyltransferase	-	-	-	ko:K09962	-	-	-	-	ko00000	-	-	-	NTP_transf_6
SX3_k127_3709862_22	1297865.APJD01000011_gene6755	1.799e-68	235.0	COG3801@1|root,COG3801@2|Bacteria,1RHVH@1224|Proteobacteria,2U8M4@28211|Alphaproteobacteria,3JZU0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate	-	-	-	-	-	-	-	-	-	-	-	-	YjbR
SX3_k127_3709862_8	1297865.APJD01000011_gene6756	1.921e-164	527.0	COG0681@1|root,COG0681@2|Bacteria,1MXUF@1224|Proteobacteria,2TRRM@28211|Alphaproteobacteria,3JT0X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Belongs to the peptidase S26 family	MA20_19800	-	3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S24
SX3_k127_3709862_2	1297865.APJD01000011_gene6757	2.549e-310	953.0	COG0312@1|root,COG0312@2|Bacteria,1MUSK@1224|Proteobacteria,2TRSR@28211|Alphaproteobacteria,3JUF4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative modulator of DNA gyrase	tldD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	ko:K03568	-	-	-	-	ko00000,ko01002	-	-	-	PmbA_TldD
SX3_k127_3709862_19	398525.KB900701_gene846	4.307e-75	254.0	COG1733@1|root,COG1733@2|Bacteria,1RDPW@1224|Proteobacteria,2VF3F@28211|Alphaproteobacteria,3JYPD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_3709862_21	398525.KB900701_gene845	8.717e-69	235.0	COG4270@1|root,COG4270@2|Bacteria,1N9H8@1224|Proteobacteria,2UDD8@28211|Alphaproteobacteria,3JZXY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DoxX-like family	-	-	-	-	-	-	-	-	-	-	-	-	DoxX_2
SX3_k127_3709862_17	1297865.APJD01000011_gene6760	1.884e-101	332.0	COG1416@1|root,COG1416@2|Bacteria,1R8VQ@1224|Proteobacteria,2U1F4@28211|Alphaproteobacteria,3JXAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DrsE
SX3_k127_3709862_14	1297865.APJD01000011_gene6761	9.717e-113	375.0	COG0526@1|root,COG0526@2|Bacteria,1R8RZ@1224|Proteobacteria,2U2T2@28211|Alphaproteobacteria,3JR91@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CO	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,Redoxin
SX3_k127_3709862_24	324925.Ppha_2427	4.368e-37	160.0	COG1262@1|root,COG5635@1|root,COG1262@2|Bacteria,COG5635@2|Bacteria,1FEK9@1090|Chlorobi	2|Bacteria	T	NACHT nucleoside triphosphatase	-	-	2.7.11.1	ko:K12132	-	-	-	-	ko00000,ko01000,ko01001	-	-	-	CBM_6,FGE-sulfatase,NACHT,NPCBM,PEGA,Pkinase
SX3_k127_3709862_25	63737.Npun_F6606	3.252e-35	154.0	COG4995@1|root,COG4995@2|Bacteria	2|Bacteria	S	CHAT domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_16,CHAT,FGE-sulfatase,NB-ARC,TPR_1,TPR_12,TPR_16,TPR_2,TPR_8
SX3_k127_3709862_15	1297865.APJD01000011_gene6762	2.225e-107	353.0	COG5342@1|root,COG5342@2|Bacteria,1NA8M@1224|Proteobacteria,2TSY3@28211|Alphaproteobacteria,3JR3U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Invasion associated locus B (IalB) protein	MA20_19790	-	-	-	-	-	-	-	-	-	-	-	IalB
SX3_k127_3709862_7	172088.AUGA01000001_gene6548	9.139e-172	542.0	COG1622@1|root,COG1622@2|Bacteria,1MWHZ@1224|Proteobacteria,2TRK6@28211|Alphaproteobacteria,3JTG1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B)	coxB	-	1.9.3.1	ko:K02275	ko00190,ko01100,map00190,map01100	M00155	R00081	RC00016	ko00000,ko00001,ko00002,ko01000	3.D.4.2,3.D.4.4,3.D.4.6	-	-	COX2,COX2_TM
SX3_k127_3709862_0	1297865.APJD01000011_gene6764	0.0	1111.0	COG0843@1|root,COG0843@2|Bacteria,1MU7S@1224|Proteobacteria,2TQP1@28211|Alphaproteobacteria,3JTJ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B	ctaD	GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0022900,GO:0022904,GO:0034220,GO:0044237,GO:0044464,GO:0045333,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600	1.9.3.1	ko:K02274	ko00190,ko01100,map00190,map01100	M00155	R00081	RC00016	ko00000,ko00001,ko00002,ko01000	3.D.4.2,3.D.4.3,3.D.4.4,3.D.4.6	-	-	COX1
SX3_k127_3709862_6	1297865.APJD01000011_gene6765	7.782e-190	601.0	COG0109@1|root,COG0109@2|Bacteria,1MW3S@1224|Proteobacteria,2TRD8@28211|Alphaproteobacteria,3JV21@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group	ctaB	GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.141	ko:K02257	ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714	M00154	R07411	RC01786	ko00000,ko00001,ko00002,ko01000,ko01006,ko03029	-	-	-	UbiA
SX3_k127_3709862_26	1230476.C207_03081	7.045e-23	109.0	2EGEY@1|root,33A6Y@2|Bacteria,1N80G@1224|Proteobacteria,2UFIT@28211|Alphaproteobacteria,3K0X9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	coxF	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3709862_11	1297865.APJD01000011_gene6767	3.745e-133	428.0	COG3175@1|root,COG3175@2|Bacteria,1RDTU@1224|Proteobacteria,2U6ZT@28211|Alphaproteobacteria,3JRFV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I	ctaG	-	-	ko:K02258	ko00190,ko01100,ko04714,map00190,map01100,map04714	M00154	-	-	ko00000,ko00001,ko00002,ko03029	3.D.4.8	-	-	CtaG_Cox11
SX3_k127_3709862_5	1297865.APJD01000011_gene6768	3.31e-207	646.0	COG1845@1|root,COG1845@2|Bacteria,1MUCK@1224|Proteobacteria,2TQWA@28211|Alphaproteobacteria,3JV28@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	cytochrome c oxidase subunit III	ctaE	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.9.3.1	ko:K02276	ko00190,ko01100,map00190,map01100	M00155	R00081	RC00016	ko00000,ko00001,ko00002,ko01000	3.D.4.4,3.D.4.6	-	-	COX3
SX3_k127_3709862_18	1297865.APJD01000011_gene6769	6.172e-77	259.0	COG5349@1|root,COG5349@2|Bacteria,1N0WU@1224|Proteobacteria,2UCE7@28211|Alphaproteobacteria,3JYWF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF983)	MA20_19755	-	-	-	-	-	-	-	-	-	-	-	DUF983
SX3_k127_3709862_9	1297865.APJD01000011_gene6770	4.833e-160	518.0	COG3346@1|root,COG3346@2|Bacteria,1MWWG@1224|Proteobacteria,2U0N5@28211|Alphaproteobacteria,3JT3G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SURF1 family	surf1	-	-	ko:K14998	-	-	-	-	ko00000,ko03029	3.D.4.8	-	-	SURF1
SX3_k127_3709862_1	1297865.APJD01000011_gene6771	0.0	1029.0	COG0477@1|root,COG2814@2|Bacteria,1MU1I@1224|Proteobacteria,2TVXT@28211|Alphaproteobacteria,3K6KI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
SX3_k127_3709862_3	1297865.APJD01000011_gene6772	1.938e-252	782.0	COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,2TS39@28211|Alphaproteobacteria,3JS4E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Biotin-lipoyl like	-	-	-	ko:K03543	-	M00701	-	-	ko00000,ko00002,ko02000	8.A.1.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_3709862_12	1297865.APJD01000011_gene6773	5.61e-133	429.0	COG1309@1|root,COG1309@2|Bacteria,1QTG5@1224|Proteobacteria,2U294@28211|Alphaproteobacteria,3JWM0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_7,TetR_N
SX3_k127_3709862_27	1230476.C207_01936	4.151e-12	68.0	2CBGE@1|root,2ZZAR@2|Bacteria,1MZRP@1224|Proteobacteria,2UDHF@28211|Alphaproteobacteria,3K06Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3709862_10	1297865.APJD01000011_gene6774	1.21e-150	477.0	COG1985@1|root,COG1985@2|Bacteria,1PXWC@1224|Proteobacteria,2TVKP@28211|Alphaproteobacteria,3JRVQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	RibD C-terminal domain	MA20_21040	-	1.1.1.193	ko:K00082	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R03458	RC00933	ko00000,ko00001,ko00002,ko01000	-	-	-	RibD_C
SX3_k127_3709862_4	1297865.APJD01000011_gene6775	3.647e-208	649.0	COG0598@1|root,COG0598@2|Bacteria,1MXRB@1224|Proteobacteria,2TT8H@28211|Alphaproteobacteria,3JVE8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	CorA-like Mg2+ transporter protein	-	-	-	-	-	-	-	-	-	-	-	-	CorA
SX3_k127_3709862_23	1297865.APJD01000011_gene6776	4.092e-51	183.0	COG1937@1|root,COG1937@2|Bacteria,1N6ZN@1224|Proteobacteria,2U9SD@28211|Alphaproteobacteria,3JZR7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal-sensitive transcriptional repressor	-	-	-	-	-	-	-	-	-	-	-	-	Trns_repr_metal
SX3_k127_3709862_20	1297865.APJD01000011_gene6777	1.983e-74	250.0	COG2215@1|root,COG2215@2|Bacteria,1QDA1@1224|Proteobacteria,2TUN7@28211|Alphaproteobacteria,3JT8Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the NiCoT transporter (TC 2.A.52) family	-	-	-	ko:K08970	-	-	-	-	ko00000,ko02000	2.A.52.2	-	-	NicO
SX3_k127_3719441_1	1297865.APJD01000035_gene5433	7.98e-155	492.0	COG3846@1|root,COG3846@2|Bacteria,1MVFD@1224|Proteobacteria,2TSHU@28211|Alphaproteobacteria,3JS5M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PFAM TrbL VirB6 plasmid conjugal transfer protein	-	-	-	ko:K07344	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	TrbL
SX3_k127_3719441_2	1297865.APJD01000035_gene5434	2.296e-146	467.0	COG3701@1|root,COG3701@2|Bacteria,1MVUC@1224|Proteobacteria,2TRQ6@28211|Alphaproteobacteria,3JS4H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Conjugal transfer protein	-	-	-	ko:K20531	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	VirB8
SX3_k127_3719441_0	1297865.APJD01000035_gene5435	8.694e-205	653.0	COG3504@1|root,COG3504@2|Bacteria,1MVEF@1224|Proteobacteria,2TR8Y@28211|Alphaproteobacteria,3JSXS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Conjugal transfer protein trbG	-	-	-	ko:K20532	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	CagX
SX3_k127_3719441_3	1297865.APJD01000035_gene5436	4.365e-118	385.0	COG2948@1|root,COG2948@2|Bacteria,1MU7U@1224|Proteobacteria,2TRRR@28211|Alphaproteobacteria,3JRQC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PFAM conjugation TrbI family protein	-	-	-	ko:K20533	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	TrbI
SX3_k127_3743033_0	1297865.APJD01000033_gene7021	0.0	1187.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JSCZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	acsf	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_3743033_1	1297865.APJD01000033_gene7022	5.893e-97	317.0	COG0524@1|root,COG0524@2|Bacteria,1MUUC@1224|Proteobacteria,2TS9D@28211|Alphaproteobacteria,3JTT2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	pfkB family carbohydrate kinase	pfkB	-	2.7.1.20,2.7.1.4	ko:K00847,ko:K00856	ko00051,ko00230,ko00500,ko00520,ko01100,map00051,map00230,map00500,map00520,map01100	-	R00185,R00760,R00867,R03920	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	PfkB
SX3_k127_3743790_4	1230476.C207_02682	3.389e-169	533.0	COG2255@1|root,COG2255@2|Bacteria,1MU38@1224|Proteobacteria,2TQNG@28211|Alphaproteobacteria,3JRKW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing	ruvB	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	3.6.4.12	ko:K03551	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvB_C,RuvB_N
SX3_k127_3743790_6	1297865.APJD01000004_gene5360	7.377e-123	395.0	COG0632@1|root,COG0632@2|Bacteria,1MWJR@1224|Proteobacteria,2TSKM@28211|Alphaproteobacteria,3JS1W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB	ruvA	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	3.6.4.12	ko:K03550	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	HHH_5,RuvA_C,RuvA_N
SX3_k127_3743790_8	1297865.APJD01000004_gene5361	1.615e-105	347.0	COG0817@1|root,COG0817@2|Bacteria,1MUJI@1224|Proteobacteria,2U70Z@28211|Alphaproteobacteria,3JSNW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	ruvC	GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576	3.1.22.4	ko:K01159	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	RuvC
SX3_k127_3743790_5	1297865.APJD01000004_gene5362	1.662e-151	480.0	COG0217@1|root,COG0217@2|Bacteria,1MW3X@1224|Proteobacteria,2TRSK@28211|Alphaproteobacteria,3JRDF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulatory protein	MA20_17930	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	Transcrip_reg
SX3_k127_3743790_1	1297865.APJD01000004_gene5363	0.0	1088.0	COG0840@1|root,COG0840@2|Bacteria,1NJXF@1224|Proteobacteria,2TTNX@28211|Alphaproteobacteria,3JUAM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	MCPsignal,PilZ
SX3_k127_3743790_2	1297865.APJD01000004_gene5364	1.045e-296	914.0	COG0840@1|root,COG0840@2|Bacteria,1NJXF@1224|Proteobacteria,2TTNX@28211|Alphaproteobacteria,3JT7C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	MA20_17940	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	MCPsignal
SX3_k127_3743790_0	1297865.APJD01000004_gene5365	0.0	1166.0	COG0457@1|root,COG2114@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,3JR8W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	Guanylate_cyc
SX3_k127_3743790_3	1297865.APJD01000004_gene5366	1.795e-180	565.0	COG1692@1|root,COG1692@2|Bacteria,1MW12@1224|Proteobacteria,2TS4S@28211|Alphaproteobacteria,3JQZG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YmdB-like protein	MA20_17970	-	-	ko:K09769	-	-	-	-	ko00000	-	-	-	YmdB
SX3_k127_3743790_7	1297865.APJD01000004_gene5367	3.615e-119	385.0	COG0212@1|root,COG0212@2|Bacteria,1MZG0@1224|Proteobacteria,2UBY4@28211|Alphaproteobacteria,3JTHS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family	MA20_17975	-	6.3.3.2	ko:K01934	ko00670,ko01100,map00670,map01100	-	R02301	RC00183	ko00000,ko00001,ko01000	-	-	-	5-FTHF_cyc-lig
SX3_k127_3746203_2	1304878.AUGD01000020_gene4349	2.078e-127	411.0	COG0038@1|root,COG0038@2|Bacteria,1MV4K@1224|Proteobacteria,2TT6V@28211|Alphaproteobacteria,3JX9K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Voltage gated chloride channel	-	-	-	ko:K03281	-	-	-	-	ko00000	2.A.49	-	-	Voltage_CLC
SX3_k127_3746203_1	1297865.APJD01000014_gene748	4.966e-256	794.0	COG2114@1|root,COG2114@2|Bacteria,1MWHK@1224|Proteobacteria,2TR2J@28211|Alphaproteobacteria,3JQWW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc
SX3_k127_3746203_0	1297865.APJD01000014_gene749	0.0	1965.0	COG3468@1|root,COG3468@2|Bacteria,1R8WV@1224|Proteobacteria,2U0JK@28211|Alphaproteobacteria,3JUMT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Autotransporter beta-domain	-	-	-	ko:K19231	-	-	-	-	ko00000,ko02000	1.B.12	-	-	Autotransporter,PATR,Pertactin
SX3_k127_3749148_5	1297865.APJD01000003_gene6492	2.228e-27	110.0	2BITE@1|root,32D15@2|Bacteria,1PUZ5@1224|Proteobacteria,2UNBH@28211|Alphaproteobacteria,3K28M@41294|Bradyrhizobiaceae	1297865.APJD01000003_gene6492|-	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3749148_2	1297865.APJD01000003_gene6493	1.84e-77	263.0	COG1942@1|root,COG1942@2|Bacteria,1Q0W6@1224|Proteobacteria,2UAEY@28211|Alphaproteobacteria,3JZQK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tautomerase enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Tautomerase_2
SX3_k127_3749148_3	1230476.C207_02618	8.348e-75	254.0	2CGX6@1|root,34631@2|Bacteria,1RJQA@1224|Proteobacteria,2UAJT@28211|Alphaproteobacteria,3JZJT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3749148_0	1297865.APJD01000003_gene6495	0.0	1317.0	COG0028@1|root,COG0028@2|Bacteria,1MX3Q@1224|Proteobacteria,2U2RW@28211|Alphaproteobacteria,3JX83@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	-	-	2.2.1.6,4.1.1.7	ko:K01576,ko:K01652	ko00290,ko00627,ko00650,ko00660,ko00770,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00290,map00627,map00650,map00660,map00770,map01100,map01110,map01120,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R01764,R02672,R03050,R04672,R04673,R08648	RC00027,RC00106,RC00595,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_3749148_4	1297865.APJD01000003_gene6496	1.121e-71	263.0	COG2010@1|root,COG2010@2|Bacteria,1NK3D@1224|Proteobacteria,2UN55@28211|Alphaproteobacteria,3K3Y7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
SX3_k127_3749148_1	1297865.APJD01000003_gene6497	1.042e-321	983.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JQP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	fct	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,STN,TonB_dep_Rec
SX3_k127_3766112_6	1297865.APJD01000023_gene1154	1.097e-126	405.0	COG0438@1|root,COG0438@2|Bacteria,1PEAE@1224|Proteobacteria,2TRDN@28211|Alphaproteobacteria,3JQR5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
SX3_k127_3766112_0	1297865.APJD01000023_gene1155	0.0	1110.0	COG0223@1|root,COG0223@2|Bacteria,1NN5V@1224|Proteobacteria,2TTHZ@28211|Alphaproteobacteria,3JRTG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3766112_2	1297865.APJD01000023_gene1156	2.275e-248	769.0	COG0683@1|root,COG0683@2|Bacteria,1NMR9@1224|Proteobacteria,2TTGW@28211|Alphaproteobacteria,3JTJG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_3766112_5	1297865.APJD01000023_gene1157	3.775e-148	469.0	COG0300@1|root,COG0300@2|Bacteria,1R409@1224|Proteobacteria,2TRST@28211|Alphaproteobacteria,3JU99@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_3766112_3	1297865.APJD01000023_gene1158	4.859e-172	541.0	2BR25@1|root,32JZX@2|Bacteria,1NBAX@1224|Proteobacteria,2TTE5@28211|Alphaproteobacteria,3JWI7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	GST_C
SX3_k127_3766112_1	1297865.APJD01000023_gene1159	6.365e-252	779.0	COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2TSX8@28211|Alphaproteobacteria,3JUVR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Iron-containing alcohol dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Fe-ADH
SX3_k127_3766112_4	1297865.APJD01000023_gene1160	3.083e-154	490.0	COG1024@1|root,COG1024@2|Bacteria,1Q67Q@1224|Proteobacteria,2U2T5@28211|Alphaproteobacteria,3JRNJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_21535	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_3766112_7	1297865.APJD01000023_gene1161	5.368e-96	314.0	COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,2TQRT@28211|Alphaproteobacteria,3JQS9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	-	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_3782339_6	1123269.NX02_03375	7.353e-56	205.0	COG0697@1|root,COG0697@2|Bacteria,1RI87@1224|Proteobacteria,2UAJW@28211|Alphaproteobacteria,2K9MS@204457|Sphingomonadales	204457|Sphingomonadales	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_3782339_1	266779.Meso_2942	3.46e-142	458.0	COG1028@1|root,COG1028@2|Bacteria,1MUCH@1224|Proteobacteria	1224|Proteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_3782339_10	1163407.UU7_04577	2.332e-06	52.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X5H3@135614|Xanthomonadales	135614|Xanthomonadales	C	Belongs to the aldehyde dehydrogenase family	xylC	-	1.2.1.28,1.2.1.3	ko:K00128,ko:K00141	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00622,ko00623,ko00625,ko00627,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00622,map00623,map00625,map00627,map00903,map00981,map01100,map01110,map01120,map01130,map01220	M00135,M00537,M00538	R00264,R00631,R00710,R00904,R01293,R01419,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R05289,R05663,R05664,R06366,R07667,R08146	RC00047,RC00071,RC00075,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_3782339_2	160492.XF_1729	8.769e-140	454.0	COG0667@1|root,COG0667@2|Bacteria,1MWGZ@1224|Proteobacteria,1SKEG@1236|Gammaproteobacteria,1X5N8@135614|Xanthomonadales	135614|Xanthomonadales	C	Aldo/keto reductase family	-	-	1.1.1.65	ko:K05275	ko00750,ko01100,ko01120,map00750,map01100,map01120	-	R01708	RC00116	ko00000,ko00001,ko01000	-	-	-	Aldo_ket_red
SX3_k127_3782339_3	401053.AciPR4_3726	8.48e-129	423.0	COG0596@1|root,COG0596@2|Bacteria,3Y610@57723|Acidobacteria,2JKYJ@204432|Acidobacteriia	204432|Acidobacteriia	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_3782339_0	265072.Mfla_1035	5.406e-143	466.0	COG2807@1|root,COG2807@2|Bacteria,1MXGT@1224|Proteobacteria,2VZJD@28216|Betaproteobacteria,2KKZB@206350|Nitrosomonadales	206350|Nitrosomonadales	P	Major Facilitator Superfamily	-	-	-	ko:K03449	-	-	-	-	ko00000,ko02000	2.A.1.17	-	-	MFS_1
SX3_k127_3782339_4	1218075.BAYA01000010_gene3420	9.209e-129	423.0	COG0596@1|root,COG0596@2|Bacteria,1MUSF@1224|Proteobacteria,2VJ1S@28216|Betaproteobacteria,1K1WG@119060|Burkholderiaceae	28216|Betaproteobacteria	S	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_3782339_5	1500897.JQNA01000002_gene5263	2.55e-83	282.0	COG0596@1|root,COG0596@2|Bacteria,1MX5U@1224|Proteobacteria	1224|Proteobacteria	S	hydrolases or acyltransferases, alpha beta hydrolase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_3782339_8	1429916.X566_00720	1.577e-29	119.0	2EBH9@1|root,335HS@2|Bacteria,1ND75@1224|Proteobacteria,2UGZH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3782339_9	1041146.ATZB01000035_gene649	2.962e-29	124.0	COG3831@1|root,COG3831@2|Bacteria,1RIDI@1224|Proteobacteria,2UAG1@28211|Alphaproteobacteria,4BGQY@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Proposed nucleic acid binding domain	-	-	-	-	-	-	-	-	-	-	-	-	WGR
SX3_k127_3782339_7	288000.BBta_p0007	9.193e-40	151.0	COG5489@1|root,COG5489@2|Bacteria,1RK0P@1224|Proteobacteria,2U90N@28211|Alphaproteobacteria,3JZ2Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_3788889_11	1297865.APJD01000014_gene650	1.092e-33	130.0	COG0818@1|root,COG0818@2|Bacteria,1MZ3Q@1224|Proteobacteria,2U9IE@28211|Alphaproteobacteria,3JYQQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Recycling of diacylglycerol produced during the turnover of membrane phospholipid	dgkA	-	2.7.1.107	ko:K00901	ko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231	-	R02240	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	DAGK_prokar
SX3_k127_3788889_0	1297865.APJD01000014_gene651	2.358e-312	957.0	COG3200@1|root,COG3200@2|Bacteria,1MUWF@1224|Proteobacteria,2TR0E@28211|Alphaproteobacteria,3JUF8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	phospho-2-dehydro-3-deoxyheptonate aldolase	aroF	GO:0003674,GO:0003824,GO:0003849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009507,GO:0009536,GO:0009611,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019438,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0050896,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.54	ko:K01626	ko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024	M00022	R01826	RC00435	ko00000,ko00001,ko00002,ko01000	-	-	-	DAHP_synth_2
SX3_k127_3788889_3	1297865.APJD01000014_gene652	5.051e-214	664.0	COG4757@1|root,COG4757@2|Bacteria,1Q1V6@1224|Proteobacteria,2U1QB@28211|Alphaproteobacteria,3JT7Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6,Hydrolase_4
SX3_k127_3788889_8	216591.BCAL2803	3.358e-93	314.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2VHFY@28216|Betaproteobacteria,1K0FW@119060|Burkholderiaceae	28216|Betaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3788889_4	595537.Varpa_1517	6.957e-195	622.0	COG0477@1|root,COG0477@2|Bacteria,1MX9T@1224|Proteobacteria,2VPHY@28216|Betaproteobacteria,4AGBN@80864|Comamonadaceae	28216|Betaproteobacteria	EGP	Major facilitator superfamily MFS_1	stp1	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_3788889_7	1297865.APJD01000014_gene653	2.686e-94	313.0	COG0251@1|root,COG0251@2|Bacteria,1RD3E@1224|Proteobacteria	1224|Proteobacteria	J	Translation initiation inhibitor, yjgF family	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
SX3_k127_3788889_9	1297865.APJD01000014_gene654	1.409e-41	153.0	2DHZ9@1|root,301GA@2|Bacteria,1N7SJ@1224|Proteobacteria,2UGRW@28211|Alphaproteobacteria,3K179@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2934)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2934
SX3_k127_3788889_1	1297865.APJD01000014_gene655	3.227e-306	942.0	COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,2TUN5@28211|Alphaproteobacteria,3JVRY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Amino acid permease	-	-	-	ko:K03294,ko:K16238	-	-	-	-	ko00000,ko02000	2.A.3.2,2.A.3.5	-	-	AA_permease,AA_permease_2
SX3_k127_3788889_2	1297865.APJD01000014_gene656	1.007e-298	917.0	COG1249@1|root,COG1249@2|Bacteria,1MU2Z@1224|Proteobacteria,2TQS7@28211|Alphaproteobacteria,3JSB4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family	gor	GO:0000166,GO:0000302,GO:0000305,GO:0003674,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0017076,GO:0019725,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0065007,GO:0065008,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901700	1.8.1.7	ko:K00383	ko00480,ko04918,map00480,map04918	-	R00094,R00115	RC00011	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_dim
SX3_k127_3788889_6	1297865.APJD01000014_gene657	5.433e-97	319.0	COG3184@1|root,COG3184@2|Bacteria,1RGVX@1224|Proteobacteria,2UBE3@28211|Alphaproteobacteria,3JSJU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2059)	-	-	-	ko:K09924	-	-	-	-	ko00000	-	-	-	DUF2059
SX3_k127_3788889_5	1297865.APJD01000014_gene658	5.167e-143	454.0	COG0120@1|root,COG0120@2|Bacteria,1MVGR@1224|Proteobacteria,2TU68@28211|Alphaproteobacteria,3JTM0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate	rpiA	-	5.3.1.6	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167,M00580	R01056	RC00434	ko00000,ko00001,ko00002,ko01000	-	-	-	Rib_5-P_isom_A
SX3_k127_3788889_10	1297865.APJD01000014_gene659	3.243e-35	134.0	COG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,2TSTP@28211|Alphaproteobacteria,3JU6V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_3792115_0	1297865.APJD01000011_gene6734	1.214e-271	836.0	COG0683@1|root,COG0683@2|Bacteria,1MVQX@1224|Proteobacteria,2TUJW@28211|Alphaproteobacteria,3JTJV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_22055	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_3792115_1	224911.27349399	4.64e-248	773.0	COG1201@1|root,COG1201@2|Bacteria,1MUSW@1224|Proteobacteria,2TR7V@28211|Alphaproteobacteria,3JRG1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DEAD/H associated	lhr	-	-	ko:K03724	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DEAD,DEAD_assoc,Helicase_C
SX3_k127_3797496_4	1230476.C207_01289	1.298e-23	100.0	COG0451@1|root,COG0451@2|Bacteria,1MUGT@1224|Proteobacteria,2TRF6@28211|Alphaproteobacteria,3JTUM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction	fcl	-	1.1.1.271	ko:K02377	ko00051,ko00520,ko01100,map00051,map00520,map01100	-	R05692	RC01014	ko00000,ko00001,ko01000	-	-	-	Epimerase
SX3_k127_3797496_2	1297865.APJD01000047_gene4834	4.571e-175	550.0	COG1587@1|root,COG1587@2|Bacteria,1N93T@1224|Proteobacteria,2TRG8@28211|Alphaproteobacteria,3JR6G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Uroporphyrinogen-III synthase HemD	-	-	4.2.1.75	ko:K01719	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R03165	RC01861	ko00000,ko00001,ko00002,ko01000	-	-	-	HEM4
SX3_k127_3797496_0	1297865.APJD01000047_gene4833	1.587e-188	589.0	COG0788@1|root,COG0788@2|Bacteria,1MVCF@1224|Proteobacteria,2TR4V@28211|Alphaproteobacteria,3JRFA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4)	purU	-	3.5.1.10	ko:K01433	ko00630,ko00670,map00630,map00670	-	R00944	RC00026,RC00111	ko00000,ko00001,ko01000	-	-	-	ACT,Formyl_trans_N
SX3_k127_3797496_1	1297865.APJD01000047_gene4832	2.489e-176	552.0	COG1409@1|root,COG1409@2|Bacteria,1MWKX@1224|Proteobacteria,2U5MK@28211|Alphaproteobacteria,3JWS0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes	cpdA	-	3.1.4.53	ko:K03651	ko00230,ko02025,map00230,map02025	-	R00191	RC00296	ko00000,ko00001,ko01000	-	-	-	Metallophos
SX3_k127_3797496_3	1297865.APJD01000047_gene4831	2.142e-52	188.0	2C1G3@1|root,30256@2|Bacteria,1NBF4@1224|Proteobacteria,2UFSX@28211|Alphaproteobacteria,3K0ZG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3801367_4	1297865.APJD01000005_gene3816	6.468e-174	546.0	COG0642@1|root,COG0642@2|Bacteria,1QTVA@1224|Proteobacteria,2U5EI@28211|Alphaproteobacteria,3JRC5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	MA20_15235	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
SX3_k127_3801367_5	1230476.C207_01824	1.935e-146	469.0	COG0745@1|root,COG0745@2|Bacteria,1MU67@1224|Proteobacteria,2TRTZ@28211|Alphaproteobacteria,3JT22@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	transcriptional regulator, winged helix family	ragA	GO:0000160,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0006355,GO:0007154,GO:0007165,GO:0008150,GO:0009889,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031326,GO:0035556,GO:0042221,GO:0042802,GO:0046688,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_3801367_1	1297865.APJD01000005_gene3814	0.0	1025.0	COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2TQPZ@28211|Alphaproteobacteria,3JQQI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the peptidase S1C family	MA20_15480	-	3.4.21.107	ko:K04771	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ_2,Trypsin_2
SX3_k127_3801367_7	1297865.APJD01000005_gene3813	1.876e-90	325.0	COG3088@1|root,COG3088@2|Bacteria,1MZZ5@1224|Proteobacteria,2U96P@28211|Alphaproteobacteria,3JYWC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	subunit of a heme lyase	cycL	-	-	ko:K02200	-	-	-	-	ko00000	-	-	-	CcmH
SX3_k127_3801367_0	1297865.APJD01000005_gene3812	0.0	1304.0	COG1138@1|root,COG1138@2|Bacteria,1MUQS@1224|Proteobacteria,2TRNG@28211|Alphaproteobacteria,3JRX0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Cytochrome c-type biogenesis protein	ccmF	-	-	ko:K02198	-	-	-	-	ko00000,ko02000	9.B.14.1	-	-	CcmF_C,Cytochrom_C_asm
SX3_k127_3801367_6	1297865.APJD01000005_gene3811	2.878e-94	311.0	COG2332@1|root,COG2332@2|Bacteria,1RHN5@1224|Proteobacteria,2U99J@28211|Alphaproteobacteria,3JYFM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH	ccmE	GO:0003674,GO:0003824,GO:0008150,GO:0009987,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043933,GO:0044085,GO:0065003,GO:0071840	-	ko:K02197	-	-	-	-	ko00000	-	-	-	CcmE
SX3_k127_3801367_3	1297865.APJD01000005_gene3810	4.109e-230	714.0	COG4235@1|root,COG4235@2|Bacteria,1MY4J@1224|Proteobacteria,2TSI7@28211|Alphaproteobacteria,3JT3X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Cytochrome c-type biogenesis protein	cycH	-	-	ko:K02200	-	-	-	-	ko00000	-	-	-	TPR_16,TPR_19
SX3_k127_3801367_2	1297865.APJD01000005_gene3808	3.124e-288	889.0	28K9G@1|root,2Z9X1@2|Bacteria,1NEMY@1224|Proteobacteria,2U0J7@28211|Alphaproteobacteria,3JSTQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_15515	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3801367_10	1304878.AUGD01000018_gene1293	0.0001812	44.0	29ZK8@1|root,30MKM@2|Bacteria,1RF9T@1224|Proteobacteria,2U8EN@28211|Alphaproteobacteria,3JYSZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3801367_8	1297865.APJD01000005_gene3807	1.875e-36	138.0	COG0642@1|root,COG0642@2|Bacteria,1MX6R@1224|Proteobacteria,2TS9N@28211|Alphaproteobacteria,3JRDW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	feuQ	-	-	-	-	-	-	-	-	-	-	-	2CSK_N,HATPase_c
SX3_k127_3805744_12	1230476.C207_03390	5.546e-95	312.0	COG0683@1|root,COG0683@2|Bacteria,1MX94@1224|Proteobacteria,2TUB9@28211|Alphaproteobacteria,3JVVA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_3805744_0	1297865.APJD01000006_gene4616	0.0	1947.0	COG0671@1|root,COG4625@1|root,COG0671@2|Bacteria,COG4625@2|Bacteria,1MU92@1224|Proteobacteria,2TSB7@28211|Alphaproteobacteria,3JUBZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,PATR
SX3_k127_3805744_6	1297865.APJD01000006_gene4615	4.235e-198	619.0	COG0111@1|root,COG0111@2|Bacteria,1P7J3@1224|Proteobacteria,2TV9K@28211|Alphaproteobacteria,3JT08@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	MA20_02105	-	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_3805744_3	1297865.APJD01000006_gene4614	0.0	1139.0	COG1593@1|root,COG3090@1|root,COG1593@2|Bacteria,COG3090@2|Bacteria,1MU0F@1224|Proteobacteria,2TUAJ@28211|Alphaproteobacteria,3JVEW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporters, DctQ component	-	-	-	-	-	-	-	-	-	-	-	-	DctM,DctQ
SX3_k127_3805744_5	1297865.APJD01000006_gene4613	4.521e-217	678.0	COG1638@1|root,COG1638@2|Bacteria,1MVHC@1224|Proteobacteria,2TSGH@28211|Alphaproteobacteria,3JRA6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	-	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_3805744_9	1297865.APJD01000006_gene4612	2.49e-154	489.0	COG2186@1|root,COG2186@2|Bacteria,1MV83@1224|Proteobacteria,2UDPS@28211|Alphaproteobacteria,3JWGY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_3805744_1	1297865.APJD01000006_gene4611	0.0	1337.0	COG2114@1|root,COG2114@2|Bacteria,1RBTC@1224|Proteobacteria,2TV5V@28211|Alphaproteobacteria,3JQSU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc,dCache_1
SX3_k127_3805744_10	1297865.APJD01000006_gene4610	5.1e-142	461.0	COG0785@1|root,COG0785@2|Bacteria,1RCP7@1224|Proteobacteria,2TSAI@28211|Alphaproteobacteria,3JS7I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	cytochrome c biogenesis protein	MA20_17170	-	-	ko:K06196	-	-	-	-	ko00000,ko02000	5.A.1.2	-	-	DsbD
SX3_k127_3805744_13	1297865.APJD01000006_gene4609	8.636e-95	312.0	COG2259@1|root,COG2259@2|Bacteria,1R3TF@1224|Proteobacteria,2U457@28211|Alphaproteobacteria,3JWSG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DoxX-like family	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
SX3_k127_3805744_2	1297865.APJD01000006_gene4608	0.0	1193.0	COG1331@1|root,COG1331@2|Bacteria,1MUUT@1224|Proteobacteria,2TV0X@28211|Alphaproteobacteria,3JXPF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Protein of unknown function, DUF255	-	-	-	ko:K06888	-	-	-	-	ko00000	-	-	-	GlcNAc_2-epim,Thioredox_DsbH
SX3_k127_3805744_15	1297865.APJD01000006_gene4607	8.095e-44	163.0	2C39R@1|root,32UYY@2|Bacteria,1RDH2@1224|Proteobacteria,2UBQJ@28211|Alphaproteobacteria,3K0P1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3805744_14	1297865.APJD01000006_gene4606	1.717e-44	164.0	2C39R@1|root,32UYY@2|Bacteria,1N19H@1224|Proteobacteria,2UDTU@28211|Alphaproteobacteria,3K0P5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3805744_7	1297865.APJD01000006_gene4605	1.322e-190	597.0	COG3220@1|root,COG3220@2|Bacteria,1MURE@1224|Proteobacteria,2TRZJ@28211|Alphaproteobacteria,3JR0V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0276 family	-	-	-	ko:K09930	-	-	-	-	ko00000	-	-	-	DUF692
SX3_k127_3805744_8	1297865.APJD01000006_gene4604	1.757e-166	541.0	COG3219@1|root,COG3219@2|Bacteria,1QAP4@1224|Proteobacteria,2TTIN@28211|Alphaproteobacteria,3JTZ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative DNA-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF2063
SX3_k127_3805744_4	1297865.APJD01000006_gene4603	1.87e-218	679.0	COG3975@1|root,COG3975@2|Bacteria,1N69B@1224|Proteobacteria,2U0ZK@28211|Alphaproteobacteria,3JS81@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3805744_11	1297865.APJD01000006_gene4602	1.039e-103	339.0	COG0659@1|root,COG0659@2|Bacteria,1MWDF@1224|Proteobacteria,2TT0G@28211|Alphaproteobacteria,3JV4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Permease family	-	-	-	-	-	-	-	-	-	-	-	-	STAS,Sulfate_transp
SX3_k127_381612_2	1297865.APJD01000047_gene4810	3.421e-93	319.0	2BUNJ@1|root,32PZE@2|Bacteria,1NFZZ@1224|Proteobacteria,2TV1U@28211|Alphaproteobacteria,3JXIY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_381612_1	1297865.APJD01000047_gene4811	4.359e-155	492.0	COG0179@1|root,COG0179@2|Bacteria,1MVFA@1224|Proteobacteria,2TRTM@28211|Alphaproteobacteria,3JR2I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	MA20_07900	-	3.7.1.20	ko:K16165	ko00350,ko01100,ko01120,map00350,map01100,map01120	-	R01085	RC00326,RC00446	ko00000,ko00001,ko01000	-	-	-	FAA_hydrolase
SX3_k127_381612_4	1297865.APJD01000047_gene4812	1.173e-31	129.0	29FD5@1|root,302AU@2|Bacteria,1NCF8@1224|Proteobacteria,2UHXE@28211|Alphaproteobacteria,3K1CD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_381612_3	196490.AUEZ01000015_gene4537	8.163e-63	218.0	2DYCJ@1|root,3495B@2|Bacteria,1N047@1224|Proteobacteria,2U8RT@28211|Alphaproteobacteria,3K0GG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SPW repeat	-	-	-	-	-	-	-	-	-	-	-	-	SPW
SX3_k127_381612_0	1297865.APJD01000047_gene4814	3.943e-269	833.0	COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,2TQVP@28211|Alphaproteobacteria,3JRCZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_381612_5	1297865.APJD01000047_gene4815	5.297e-12	65.0	COG0281@1|root,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,2TQJT@28211|Alphaproteobacteria,3JT6H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Malic enzyme, NAD binding domain	-	-	1.1.1.38	ko:K00027	ko00620,ko01200,ko02020,map00620,map01200,map02020	-	R00214	RC00105	ko00000,ko00001,ko01000	-	-	-	Malic_M,malic
SX3_k127_3822771_1	1297865.APJD01000007_gene2304	1.853e-250	773.0	COG0446@1|root,COG0446@2|Bacteria,1N5MC@1224|Proteobacteria,2TT55@28211|Alphaproteobacteria,3JTFD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavocytochrome c sulphide dehydrogenase, flavin-binding	fccB	-	1.8.2.3,1.8.5.4	ko:K17218,ko:K17229	ko00920,ko01120,map00920,map01120	-	R09499,R10152	RC03155	ko00000,ko00001,ko01000	-	-	-	FCSD-flav_bind,Pyr_redox_2
SX3_k127_3822771_5	1297865.APJD01000007_gene2303	3.107e-85	284.0	COG2010@1|root,COG2010@2|Bacteria,1RIV2@1224|Proteobacteria,2U9C5@28211|Alphaproteobacteria,3JZ5J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	ko:K17223	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	Cytochrom_C
SX3_k127_3822771_4	1297865.APJD01000007_gene2302	2.299e-91	301.0	COG5501@1|root,COG5501@2|Bacteria,1RH4J@1224|Proteobacteria,2U72E@28211|Alphaproteobacteria,3JUV9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfur oxidation protein SoxY	MA20_17510	-	-	ko:K17226	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	SoxY
SX3_k127_3822771_6	1297865.APJD01000007_gene2301	7.349e-59	219.0	COG5501@1|root,COG5501@2|Bacteria,1N03V@1224|Proteobacteria,2TWQY@28211|Alphaproteobacteria,3JZTG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulphur oxidation protein SoxZ	MA20_17515	-	-	ko:K17227	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	SoxZ
SX3_k127_3822771_2	1297865.APJD01000007_gene2300	1.036e-168	536.0	COG3258@1|root,COG3258@2|Bacteria,1MXB0@1224|Proteobacteria,2TTDW@28211|Alphaproteobacteria,3JT60@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Thiosulfate-oxidizing multienzyme system protein SoxA	-	-	-	ko:K17222	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	-
SX3_k127_3822771_3	1297865.APJD01000007_gene2299	1.285e-168	531.0	COG0543@1|root,COG0543@2|Bacteria,1QTSK@1224|Proteobacteria,2TQNB@28211|Alphaproteobacteria,3JQTJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Oxidoreductase NAD-binding domain	fpr	-	1.18.1.2,1.19.1.1	ko:K00528	-	-	R10159	-	ko00000,ko01000	-	-	-	FAD_binding_6,NAD_binding_1
SX3_k127_3822771_0	1297865.APJD01000007_gene2298	1.715e-264	815.0	COG0402@1|root,COG0402@2|Bacteria,1MVMR@1224|Proteobacteria,2U0AM@28211|Alphaproteobacteria,3JTUD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Amidohydrolase family	MA20_26585	-	3.5.2.18	ko:K15358	ko00760,ko01120,map00760,map01120	-	R07984	RC01933	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1
SX3_k127_3824997_19	224911.27355455	3.873e-08	55.0	COG0840@1|root,COG2770@1|root,COG0840@2|Bacteria,COG2770@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSAR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Double sensory domain of two-component sensor kinase	MA20_04120	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal,dCache_3
SX3_k127_3824997_6	1297865.APJD01000030_gene1670	2.221e-319	980.0	COG2199@1|root,COG3706@2|Bacteria,1MWHH@1224|Proteobacteria,2TSEP@28211|Alphaproteobacteria,3JVWF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF,dCache_1
SX3_k127_3824997_14	1297865.APJD01000030_gene1671	1.287e-55	194.0	2EGTC@1|root,33AJG@2|Bacteria,1N24R@1224|Proteobacteria,2UD22@28211|Alphaproteobacteria,3K0AG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3824997_0	1297865.APJD01000030_gene1672	0.0	1877.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JT9B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	MA20_18100	-	3.1.4.52	ko:K13245	ko04112,map04112	-	R08991	RC00296	ko00000,ko00001,ko01000	-	-	-	7TMR-DISMED2,7TMR-DISM_7TM,EAL,GGDEF,PAS_3
SX3_k127_3824997_7	1297865.APJD01000030_gene1673	1.871e-208	650.0	COG0604@1|root,COG0604@2|Bacteria,1MX8A@1224|Proteobacteria,2TR1J@28211|Alphaproteobacteria,3JQP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NAD(P)H quinone oxidoreductase	MA20_18095	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_3824997_1	1297865.APJD01000030_gene1674	0.0	1196.0	COG0143@1|root,COG0143@2|Bacteria,1MUBY@1224|Proteobacteria,2TQKA@28211|Alphaproteobacteria,3JXR4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation	metG	-	6.1.1.10	ko:K01874	ko00450,ko00970,map00450,map00970	M00359,M00360	R03659,R04773	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Anticodon_1,tRNA-synt_1g
SX3_k127_3824997_16	1297865.APJD01000030_gene1675	1.492e-28	118.0	COG5509@1|root,COG5509@2|Bacteria,1NG8P@1224|Proteobacteria,2UJB2@28211|Alphaproteobacteria,3K0WS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1192)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1192
SX3_k127_3824997_12	1297865.APJD01000030_gene1676	1.858e-99	326.0	COG5317@1|root,COG5317@2|Bacteria,1RJIA@1224|Proteobacteria,2U9ID@28211|Alphaproteobacteria,3JT25@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1465)	MA20_18080	-	-	ko:K13592	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	DUF1465
SX3_k127_3824997_5	1297865.APJD01000030_gene1677	7.4e-323	994.0	COG1167@1|root,COG1167@2|Bacteria,1MVGT@1224|Proteobacteria,2TRK7@28211|Alphaproteobacteria,3JS7E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EK	Aminotransferase class I and II	-	-	-	ko:K00375	-	-	-	-	ko00000,ko03000	-	-	-	Aminotran_1_2,GntR
SX3_k127_3824997_9	1297865.APJD01000030_gene1678	4.818e-137	437.0	COG2808@1|root,COG2808@2|Bacteria,1N1B9@1224|Proteobacteria,2U5JV@28211|Alphaproteobacteria,3JUDM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Putative FMN-binding domain	-	-	-	ko:K07734	-	-	-	-	ko00000,ko03000	-	-	-	FMN_bind_2
SX3_k127_3824997_11	1297865.APJD01000030_gene1679	1.051e-118	383.0	COG1280@1|root,COG1280@2|Bacteria,1RBIQ@1224|Proteobacteria,2U7PS@28211|Alphaproteobacteria,3K60Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	LysE type translocator	-	-	-	-	-	-	-	-	-	-	-	-	LysE
SX3_k127_3824997_2	1297865.APJD01000030_gene1680	0.0	1162.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRFP@28211|Alphaproteobacteria,3K0MF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	dap	-	3.4.11.19	ko:K01266	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Beta-lactamase,DAP_B
SX3_k127_3824997_20	1230476.C207_05805	7.935e-07	58.0	COG0346@1|root,COG0346@2|Bacteria,1MXNZ@1224|Proteobacteria,2VG67@28211|Alphaproteobacteria,3JXZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.14	ko:K10621	ko00362,ko00622,ko01120,ko01220,map00362,map00622,map01120,map01220	M00539	R01507,R05248	RC00387,RC01308	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_3824997_15	172088.AUGA01000007_gene8402	1.413e-46	168.0	COG0254@1|root,COG0254@2|Bacteria,1MZ69@1224|Proteobacteria,2UBSC@28211|Alphaproteobacteria,3K03V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	50S ribosomal protein L31	rpmE	-	-	ko:K02909	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L31
SX3_k127_3824997_3	398525.KB900701_gene653	0.0	1126.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,3JU3Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter	msbA2	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_3824997_13	1297865.APJD01000036_gene1392	2.127e-77	265.0	2A3T8@1|root,30SB4@2|Bacteria,1MYTP@1224|Proteobacteria,2UAW3@28211|Alphaproteobacteria,3JZKR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3824997_10	1297865.APJD01000036_gene1393	1.513e-119	386.0	COG2249@1|root,COG2249@2|Bacteria,1MXFT@1224|Proteobacteria,2VER2@28211|Alphaproteobacteria,3K454@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavodoxin-like fold	-	-	1.6.5.2	ko:K00355,ko:K11748	ko00130,ko01110,ko05200,ko05225,ko05418,map00130,map01110,map05200,map05225,map05418	-	R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000,ko02000	2.A.37.1.2	-	-	Flavodoxin_2
SX3_k127_3824997_8	1297865.APJD01000036_gene1394	4.013e-186	582.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2TRAK@28211|Alphaproteobacteria,3JUEZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3824997_4	1297865.APJD01000036_gene1395	0.0	997.0	COG3653@1|root,COG3653@2|Bacteria,1MWWY@1224|Proteobacteria,2TT5E@28211|Alphaproteobacteria,3JRMI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Amidohydrolase family	MA20_04810	-	3.5.1.82	ko:K01461	-	-	-	-	ko00000,ko01000	-	-	-	Amidohydro_3
SX3_k127_3824997_17	1297865.APJD01000036_gene1396	7.758e-20	90.0	COG0523@1|root,COG0523@2|Bacteria,1MVXC@1224|Proteobacteria,2TU5Y@28211|Alphaproteobacteria,3JVAY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobalamin synthesis protein cobW C-terminal domain	-	-	-	ko:K02234	-	-	-	-	ko00000,ko00001	-	-	-	CobW_C,cobW
SX3_k127_3828489_7	1297865.APJD01000033_gene6993	8.225e-206	641.0	COG0592@1|root,COG0592@2|Bacteria,1MVD9@1224|Proteobacteria,2TSRZ@28211|Alphaproteobacteria,3JUE8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	dnaN	-	2.7.7.7	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3
SX3_k127_3828489_11	1297865.APJD01000033_gene6994	3.922e-60	210.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,3JYGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
SX3_k127_3828489_4	1297865.APJD01000033_gene6995	2.132e-242	751.0	COG1195@1|root,COG1195@2|Bacteria,1MX8N@1224|Proteobacteria,2TQRD@28211|Alphaproteobacteria,3JS71@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP	recF	-	-	ko:K03629	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	AAA_21,AAA_23,SMC_N
SX3_k127_3828489_0	1230476.C207_03877	0.0	1581.0	COG0187@1|root,COG0187@2|Bacteria,1MVKT@1224|Proteobacteria,2TRBK@28211|Alphaproteobacteria,3JQQ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrB	-	5.99.1.3	ko:K02470	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim
SX3_k127_3828489_8	1297865.APJD01000033_gene6997	1.199e-164	522.0	COG3231@1|root,COG3231@2|Bacteria,1R9XT@1224|Proteobacteria,2U5X7@28211|Alphaproteobacteria,3K3X5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Phosphotransferase enzyme family	neo	-	2.7.1.95	ko:K19300	-	-	-	-	br01600,ko00000,ko01000,ko01504	-	-	-	APH
SX3_k127_3828489_3	1297865.APJD01000033_gene6998	1.623e-277	854.0	COG0766@1|root,COG0766@2|Bacteria,1MUH7@1224|Proteobacteria,2TRPH@28211|Alphaproteobacteria,3JVEC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine	murA	-	2.5.1.7	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R00660	RC00350	ko00000,ko00001,ko01000,ko01011	-	-	-	EPSP_synthase
SX3_k127_3828489_2	1297865.APJD01000033_gene6999	2.639e-286	882.0	COG0534@1|root,COG0534@2|Bacteria,1MUAM@1224|Proteobacteria,2TSDU@28211|Alphaproteobacteria,3JS8M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	drug transmembrane transport	-	-	-	ko:K03327	-	-	-	-	ko00000,ko02000	2.A.66.1	-	-	MatE
SX3_k127_3828489_10	1297865.APJD01000033_gene7000	5.554e-89	316.0	2DN0K@1|root,32UR5@2|Bacteria,1RB96@1224|Proteobacteria,2U18W@28211|Alphaproteobacteria,3JZ4S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2867)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2867
SX3_k127_3828489_9	1297865.APJD01000033_gene7001	1.534e-141	449.0	COG3917@1|root,COG3917@2|Bacteria,1MV6E@1224|Proteobacteria,2TVJ4@28211|Alphaproteobacteria,3JRC6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	DSBA-like thioredoxin domain	MA20_23730	-	-	-	-	-	-	-	-	-	-	-	DSBA
SX3_k127_3828489_5	1230476.C207_03882	1.963e-219	696.0	COG4129@1|root,COG4129@2|Bacteria,1QUUJ@1224|Proteobacteria,2TUUM@28211|Alphaproteobacteria,3JQNK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aromatic acid exporter family member 1	MA20_23740	-	-	-	-	-	-	-	-	-	-	-	FUSC,FUSC_2
SX3_k127_3828489_1	1297865.APJD01000033_gene7003	6.914e-298	914.0	COG2079@1|root,COG2079@2|Bacteria,1R5UM@1224|Proteobacteria,2U1F8@28211|Alphaproteobacteria,3JT40@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MmgE/PrpD family	MA20_23745	-	-	-	-	-	-	-	-	-	-	-	MmgE_PrpD
SX3_k127_3828489_12	1297865.APJD01000033_gene7004	6.501e-58	203.0	COG5470@1|root,COG5470@2|Bacteria,1N7JA@1224|Proteobacteria,2UBQW@28211|Alphaproteobacteria,3JZZR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1330)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1330
SX3_k127_3828489_6	1297865.APJD01000033_gene7005	9.932e-211	654.0	COG1680@1|root,COG1680@2|Bacteria,1MY4Y@1224|Proteobacteria,2TYCG@28211|Alphaproteobacteria,3JTS9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_3831245_11	1297865.APJD01000007_gene2055	8.474e-154	486.0	COG2070@1|root,COG2070@2|Bacteria,1MU0U@1224|Proteobacteria,2TRZS@28211|Alphaproteobacteria,3JXCN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	-	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_3831245_6	1297865.APJD01000007_gene2056	8.276e-258	806.0	COG0683@1|root,COG0683@2|Bacteria,1NQT3@1224|Proteobacteria,2UQP0@28211|Alphaproteobacteria,3K3N9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_3831245_8	1297865.APJD01000007_gene2057	1.629e-242	751.0	COG1680@1|root,COG1680@2|Bacteria,1MY01@1224|Proteobacteria,2U35E@28211|Alphaproteobacteria,3JWCA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	ampC	-	3.5.2.6	ko:K01467	ko01501,ko02020,map01501,map02020	M00628	R06363	RC01499	ko00000,ko00001,ko00002,ko01000	-	-	-	Beta-lactamase
SX3_k127_3831245_14	1297865.APJD01000007_gene2058	5.096e-67	228.0	2AA4C@1|root,30ZD8@2|Bacteria,1RKJD@1224|Proteobacteria,2UASR@28211|Alphaproteobacteria,3JZRP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3831245_0	1297865.APJD01000007_gene2059	6.939e-317	976.0	COG0297@1|root,COG0297@2|Bacteria,1MUGM@1224|Proteobacteria,2TT73@28211|Alphaproteobacteria,3JRIN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Synthesizes alpha-1,4-glucan chains using ADP-glucose	glgA	GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071704,GO:1901576	2.4.1.21	ko:K00703	ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026	M00565	R02421	RC00005	ko00000,ko00001,ko00002,ko01000,ko01003	-	GT5	-	Glyco_transf_5,Glycos_transf_1
SX3_k127_3831245_2	1230476.C207_00470	2.069e-282	867.0	COG0448@1|root,COG0448@2|Bacteria,1MVTC@1224|Proteobacteria,2TR6D@28211|Alphaproteobacteria,3JUM7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans	glgC	-	2.7.7.27	ko:K00975	ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026	M00565	R00948	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
SX3_k127_3831245_5	1297865.APJD01000007_gene2061	4.18e-268	826.0	COG0607@1|root,COG2897@1|root,COG0607@2|Bacteria,COG2897@2|Bacteria,1MU3V@1224|Proteobacteria,2TSGP@28211|Alphaproteobacteria,3JQYG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	MA20_21580	-	-	-	-	-	-	-	-	-	-	-	Rhodanese
SX3_k127_3831245_9	398525.KB900701_gene3235	1.446e-197	619.0	COG3386@1|root,COG3386@2|Bacteria,1MXB7@1224|Proteobacteria,2U2RZ@28211|Alphaproteobacteria,3JVA8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PFAM SMP-30 Gluconolaconase	-	-	-	-	-	-	-	-	-	-	-	-	SGL
SX3_k127_3831245_16	1297865.APJD01000007_gene2063	8.392e-28	115.0	2AGXF@1|root,3175Z@2|Bacteria,1NJ6A@1224|Proteobacteria,2UMA1@28211|Alphaproteobacteria,3K22M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3831245_3	1297865.APJD01000007_gene2064	2.849e-282	869.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JU23@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_3831245_1	1230476.C207_00473	1.082e-282	871.0	COG1167@1|root,COG1167@2|Bacteria,1MUJE@1224|Proteobacteria,2TQZZ@28211|Alphaproteobacteria,3JSVE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix gluconate operon transcriptional repressor	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2,GntR
SX3_k127_3831245_13	1297865.APJD01000007_gene2066	2.972e-88	293.0	COG5349@1|root,COG5349@2|Bacteria,1MZDD@1224|Proteobacteria,2UCM4@28211|Alphaproteobacteria,3JY5Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF983)	-	-	-	-	-	-	-	-	-	-	-	-	DUF983
SX3_k127_3831245_7	1230476.C207_00475	2.461e-247	766.0	COG0477@1|root,COG2814@2|Bacteria,1MW19@1224|Proteobacteria,2TRJ1@28211|Alphaproteobacteria,3JRV5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	drug resistance transporter, Bcr CflA	MA20_32310	-	-	ko:K07552	-	-	-	-	ko00000,ko02000	2.A.1.2	-	-	MFS_1
SX3_k127_3831245_4	1297865.APJD01000007_gene2068	1.626e-280	867.0	COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,2TQVP@28211|Alphaproteobacteria,3JRCZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_3831245_10	1297865.APJD01000007_gene2069	3.5e-188	589.0	2DC2D@1|root,2ZCMG@2|Bacteria,1R8RP@1224|Proteobacteria,2U2PD@28211|Alphaproteobacteria,3JX6K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3829)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3829
SX3_k127_3831245_12	1297865.APJD01000007_gene2070	1.499e-128	413.0	COG4126@1|root,COG4126@2|Bacteria,1MWVG@1224|Proteobacteria,2U0MW@28211|Alphaproteobacteria,3JS11@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Asp Glu hydantoin racemase	MA20_16560	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3831245_17	1037409.BJ6T_06680	0.0001777	46.0	COG0864@1|root,COG0864@2|Bacteria,1RK4R@1224|Proteobacteria,2U9KJ@28211|Alphaproteobacteria,3JWZM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	nikR	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	ko:K07722	-	-	-	-	ko00000,ko03000	-	-	-	NikR_C,RHH_1
SX3_k127_3831245_15	1297865.APJD01000007_gene2071	5.409e-48	171.0	COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2TX27@28211|Alphaproteobacteria,3JUJE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	-	-	-	ko:K09969	ko02010,map02010	M00232	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	SBP_bac_3
SX3_k127_3831744_5	1297863.APJF01000028_gene1355	6.029e-117	377.0	COG2520@1|root,COG2520@2|Bacteria,1QW8N@1224|Proteobacteria,2TWT2@28211|Alphaproteobacteria,3K6NV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
SX3_k127_3831744_2	666684.AfiDRAFT_0900	3.89e-220	690.0	COG4645@1|root,COG4645@2|Bacteria,1PI9Q@1224|Proteobacteria,2U1C7@28211|Alphaproteobacteria,3JS9Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	OpgC protein	-	-	-	-	-	-	-	-	-	-	-	-	OpgC_C
SX3_k127_3831744_1	504832.OCAR_7625	0.0	1211.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2TUTX@28211|Alphaproteobacteria,3JWBZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Domain of unknown function (DUF4396)	-	-	1.16.3.3	ko:K22348	-	-	-	-	ko00000,ko01000	-	-	-	Cu-oxidase_2,Cu-oxidase_3,DUF4396
SX3_k127_3831744_8	883080.HMPREF9697_00908	1.417e-60	211.0	COG2372@1|root,COG2372@2|Bacteria,1N8SS@1224|Proteobacteria,2UFW5@28211|Alphaproteobacteria,3JZRH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CopC domain	copC	-	-	ko:K07156	-	-	-	-	ko00000,ko02000	9.B.62.2	-	-	CopC
SX3_k127_3831744_4	1297863.APJF01000028_gene1359	4.272e-171	544.0	COG1276@1|root,COG1276@2|Bacteria,1P1D5@1224|Proteobacteria,2U4YY@28211|Alphaproteobacteria,3JY3K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Copper resistance protein D	copD	-	-	ko:K07245	-	-	-	-	ko00000,ko02000	9.B.62.1	-	-	CopD
SX3_k127_3831744_7	666684.AfiDRAFT_0896	2.275e-78	273.0	COG3019@1|root,COG3019@2|Bacteria,1MZ9V@1224|Proteobacteria,2UC0B@28211|Alphaproteobacteria,3JYZ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function, DUF	-	-	-	-	-	-	-	-	-	-	-	-	DUF411
SX3_k127_3831744_6	323097.Nham_4400	7.282e-84	288.0	COG3019@1|root,COG3019@2|Bacteria,1MZ9V@1224|Proteobacteria,2UC0B@28211|Alphaproteobacteria,3JZ5K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function, DUF	-	-	-	-	-	-	-	-	-	-	-	-	DUF411
SX3_k127_3831744_3	504832.OCAR_7778	1.304e-191	606.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2TQXH@28211|Alphaproteobacteria,3JVND@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Multicopper oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
SX3_k127_3831744_9	504832.OCAR_7778	1.003e-53	195.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2TQXH@28211|Alphaproteobacteria,3JVND@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Multicopper oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
SX3_k127_3831744_10	323097.Nham_4403	3.725e-53	203.0	COG5569@1|root,COG5569@2|Bacteria,1PUA2@1224|Proteobacteria,2V77T@28211|Alphaproteobacteria,3K52H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Copper binding periplasmic protein CusF	-	-	-	ko:K07810	ko02020,map02020	-	-	-	ko00000,ko00001	2.A.6.1.4	-	-	CusF_Ec
SX3_k127_3831744_0	323097.Nham_4404	0.0	2013.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	cusA	-	-	ko:K07787	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4	-	-	ACR_tran
SX3_k127_3831744_11	323097.Nham_4405	5.476e-31	121.0	COG0845@1|root,COG0845@2|Bacteria,1MVAS@1224|Proteobacteria,2TTGG@28211|Alphaproteobacteria,3JTB0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	cusB	-	-	ko:K07798	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4,8.A.1	-	-	CusF_Ec,HlyD_D23,HlyD_D4
SX3_k127_3845458_12	1297865.APJD01000018_gene5708	2.689e-190	606.0	COG2141@1|root,COG2141@2|Bacteria,1MUVN@1224|Proteobacteria,2TR26@28211|Alphaproteobacteria,3JUH0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_3845458_13	172088.AUGA01000034_gene5109	5.671e-186	583.0	COG1045@1|root,COG1045@2|Bacteria,1MVFX@1224|Proteobacteria,2TTNU@28211|Alphaproteobacteria,3JU28@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial transferase hexapeptide (six repeats)	srpH	-	2.3.1.30	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	M00021	R00586	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,SATase_N
SX3_k127_3845458_21	1297865.APJD01000018_gene5710	8.288e-117	386.0	COG1853@1|root,COG1853@2|Bacteria,1R57A@1224|Proteobacteria,2U1PF@28211|Alphaproteobacteria,3JX30@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
SX3_k127_3845458_6	1297865.APJD01000018_gene5711	1.541e-261	807.0	COG1960@1|root,COG1960@2|Bacteria,1NF2C@1224|Proteobacteria,2TQMG@28211|Alphaproteobacteria,3JWE1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_3845458_9	1297865.APJD01000018_gene5712	8.046e-215	669.0	COG0715@1|root,COG0715@2|Bacteria,1R66U@1224|Proteobacteria,2TRWT@28211|Alphaproteobacteria,3JQRP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	-	-	-	ko:K15553	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	NMT1
SX3_k127_3845458_18	1297865.APJD01000018_gene5713	5.604e-150	481.0	COG1116@1|root,COG1116@2|Bacteria,1N1Q0@1224|Proteobacteria,2U5WP@28211|Alphaproteobacteria,3JWM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system	ssuB	-	-	ko:K15555	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.17.2	-	-	ABC_tran
SX3_k127_3845458_19	1297865.APJD01000018_gene5714	3.232e-148	473.0	COG0600@1|root,COG0600@2|Bacteria,1MWDJ@1224|Proteobacteria,2U325@28211|Alphaproteobacteria,3JU8J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	ssuC	-	-	ko:K15554	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	BPD_transp_1
SX3_k127_3845458_7	1297865.APJD01000018_gene5715	2.623e-231	717.0	COG2141@1|root,COG2141@2|Bacteria,1PJES@1224|Proteobacteria,2TS9G@28211|Alphaproteobacteria,3JS2T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	1.14.14.5	ko:K04091	ko00920,map00920	-	R07210,R10206	RC01779,RC02556	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
SX3_k127_3845458_4	1297865.APJD01000018_gene5716	1.634e-287	886.0	COG2141@1|root,COG2141@2|Bacteria,1MUVN@1224|Proteobacteria,2TR26@28211|Alphaproteobacteria,3JT0A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_3845458_1	1297865.APJD01000018_gene5717	0.0	1079.0	COG1053@1|root,COG1053@2|Bacteria,1NZBR@1224|Proteobacteria,2TSN4@28211|Alphaproteobacteria,3JS97@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	asfA	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_2,Succ_DH_flav_C
SX3_k127_3845458_26	1297865.APJD01000018_gene5718	2.247e-68	234.0	COG1146@1|root,COG1146@2|Bacteria,1MYM5@1224|Proteobacteria,2U9IN@28211|Alphaproteobacteria,3JZDK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	4Fe-4S dicluster domain	-	-	-	-	-	-	-	-	-	-	-	-	Fer4
SX3_k127_3845458_8	1297865.APJD01000018_gene5719	7.684e-229	718.0	COG1135@1|root,COG1135@2|Bacteria,1QTTK@1224|Proteobacteria,2TQSF@28211|Alphaproteobacteria,3JWDF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system	metN	-	-	ko:K02071	ko02010,map02010	M00238	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.24	-	-	ABC_tran,NIL
SX3_k127_3845458_23	1101191.KI912577_gene3721	1.822e-92	309.0	COG2011@1|root,COG2011@2|Bacteria,1MW8E@1224|Proteobacteria,2TU01@28211|Alphaproteobacteria,1JTXK@119045|Methylobacteriaceae	28211|Alphaproteobacteria	P	PFAM binding-protein-dependent transport systems inner membrane component	metI	-	-	ko:K02072	ko02010,map02010	M00238	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.24	-	-	BPD_transp_1
SX3_k127_3845458_14	1297865.APJD01000018_gene5721	7.111e-171	537.0	COG1464@1|root,COG1464@2|Bacteria,1MUVY@1224|Proteobacteria,2TRCJ@28211|Alphaproteobacteria,3JT9P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NLPA lipoprotein	metQ	-	-	ko:K02073	ko02010,map02010	M00238	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.24	-	-	Lipoprotein_9
SX3_k127_3845458_17	1297865.APJD01000018_gene5722	1.175e-159	505.0	COG1464@1|root,COG1464@2|Bacteria,1MUVY@1224|Proteobacteria,2TRCJ@28211|Alphaproteobacteria,3JT9P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NLPA lipoprotein	-	-	-	ko:K02073	ko02010,map02010	M00238	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.24	-	-	Lipoprotein_9
SX3_k127_3845458_3	1297865.APJD01000018_gene5723	9.479e-305	935.0	COG2141@1|root,COG2141@2|Bacteria,1MUJ9@1224|Proteobacteria,2TQKS@28211|Alphaproteobacteria,3JTJX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_3845458_5	1297865.APJD01000018_gene5724	3.39e-287	883.0	COG2873@1|root,COG2873@2|Bacteria,1NQME@1224|Proteobacteria,2TQW9@28211|Alphaproteobacteria,3JSIR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Cys/Met metabolism PLP-dependent enzyme	-	-	2.5.1.49	ko:K01740	ko00270,ko01100,map00270,map01100	-	R01287,R04859	RC00020,RC02821,RC02848	ko00000,ko00001,ko01000	-	-	-	Cys_Met_Meta_PP
SX3_k127_3845458_15	1297865.APJD01000018_gene5725	1.3e-164	519.0	COG1464@1|root,COG1464@2|Bacteria,1R70W@1224|Proteobacteria,2U3XE@28211|Alphaproteobacteria,3JW7M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NLPA lipoprotein	-	-	-	-	-	-	-	-	-	-	-	-	Lipoprotein_9
SX3_k127_3845458_2	1297865.APJD01000018_gene5726	3.52e-314	963.0	COG4529@1|root,COG4529@2|Bacteria,1MU3U@1224|Proteobacteria,2TUBM@28211|Alphaproteobacteria,3JUXD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FAD-NAD(P)-binding	-	-	3.1.2.6	ko:K01069	ko00620,map00620	-	R01736	RC00004,RC00137	ko00000,ko00001,ko01000	-	-	-	NAD_binding_9
SX3_k127_3845458_24	1297865.APJD01000018_gene5727	3.322e-89	295.0	COG1846@1|root,COG1846@2|Bacteria,1REH3@1224|Proteobacteria,2VEQ4@28211|Alphaproteobacteria,3K3PF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	IclR helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	MarR
SX3_k127_3845458_28	1463861.JNXE01000003_gene3779	4.096e-27	115.0	COG1075@1|root,COG1075@2|Bacteria,2I2U3@201174|Actinobacteria	201174|Actinobacteria	S	Alpha beta hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_3845458_25	1230476.C207_00142	1.52e-85	286.0	COG2267@1|root,COG2267@2|Bacteria,1QU4T@1224|Proteobacteria,2TTC1@28211|Alphaproteobacteria,3K70Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_3845458_20	1297865.APJD01000018_gene5730	4.047e-132	422.0	COG1309@1|root,COG1309@2|Bacteria,1QYD4@1224|Proteobacteria,2TVBJ@28211|Alphaproteobacteria,3JRBQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	ko:K09017	-	-	-	-	ko00000,ko03000	-	-	-	TetR_N
SX3_k127_3845458_0	1297865.APJD01000018_gene5731	0.0	1378.0	COG1012@1|root,COG2030@1|root,COG1012@2|Bacteria,COG2030@2|Bacteria,1MWD4@1224|Proteobacteria,2TUPI@28211|Alphaproteobacteria,3JTGP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CI	MaoC like domain	paaN	-	1.2.1.91,3.3.2.12	ko:K02618	ko00360,ko01120,map00360,map01120	-	R09820,R09836	RC00080,RC02667	ko00000,ko00001,ko01000	-	-	-	Aldedh,MaoC_dehydratas
SX3_k127_3845458_16	1297865.APJD01000018_gene5732	2.689e-162	513.0	COG1024@1|root,COG1024@2|Bacteria,1MVQN@1224|Proteobacteria,2TUXD@28211|Alphaproteobacteria,3JSP8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase	-	-	5.3.3.18	ko:K15866	ko00360,ko01120,map00360,map01120	-	R09837,R09839	RC00004,RC00326,RC02689,RC03003	ko00000,ko00001,ko01000	-	-	-	ECH_1
SX3_k127_3845458_10	1297865.APJD01000018_gene5733	3.385e-206	642.0	COG2207@1|root,COG2207@2|Bacteria,1R4HX@1224|Proteobacteria,2U6XY@28211|Alphaproteobacteria,3JV2I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_3845458_11	1297865.APJD01000018_gene5734	6.903e-206	641.0	COG2207@1|root,COG2207@2|Bacteria,1R4HX@1224|Proteobacteria,2U6XY@28211|Alphaproteobacteria,3JV2I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_3845458_22	1297865.APJD01000018_gene5735	1.774e-104	346.0	COG1917@1|root,COG1917@2|Bacteria,1P5AF@1224|Proteobacteria,2UWP1@28211|Alphaproteobacteria,3K5BD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_3851221_0	1297865.APJD01000039_gene1718	4.7e-208	650.0	COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,2TSMQ@28211|Alphaproteobacteria,3JQPE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MatE	MA20_06615	-	-	-	-	-	-	-	-	-	-	-	MatE
SX3_k127_3851221_3	1297865.APJD01000039_gene1719	2.227e-120	386.0	COG4552@1|root,COG4552@2|Bacteria,1MVCP@1224|Proteobacteria,2TT6Z@28211|Alphaproteobacteria,3JR0T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_9
SX3_k127_3851221_1	1297865.APJD01000039_gene1720	7.181e-136	432.0	COG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,2TU3T@28211|Alphaproteobacteria,3JRQP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Destroys radicals which are normally produced within the cells and which are toxic to biological systems	sodB	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C,Sod_Fe_N
SX3_k127_3851221_4	1297865.APJD01000039_gene1721	1.215e-75	258.0	COG0239@1|root,COG0239@2|Bacteria,1MZNH@1224|Proteobacteria,2UBUP@28211|Alphaproteobacteria,3JZQH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Important for reducing fluoride concentration in the cell, thus reducing its toxicity	crcB	-	-	ko:K06199	-	-	-	-	ko00000,ko02000	1.A.43.1,1.A.43.2,1.A.43.3	-	-	CRCB
SX3_k127_3851221_2	1297865.APJD01000039_gene1722	2.489e-121	393.0	COG0811@1|root,COG0811@2|Bacteria,1NCWW@1224|Proteobacteria,2TQXQ@28211|Alphaproteobacteria,3JUM9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	MotA/TolQ/ExbB proton channel family	tolQ	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944	-	ko:K03562	ko01120,map01120	-	-	-	ko00000,ko02000	1.A.30.2.2	-	-	MotA_ExbB
SX3_k127_3854214_5	1297865.APJD01000047_gene4778	5.131e-139	443.0	COG3170@1|root,COG3170@2|Bacteria,1QW8W@1224|Proteobacteria,2TWTD@28211|Alphaproteobacteria,3K6P5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Apolipoprotein A1/A4/E domain	-	-	-	-	-	-	-	-	-	-	-	-	Apolipoprotein
SX3_k127_3854214_9	1297865.APJD01000047_gene4777	6.268e-70	238.0	COG2198@1|root,COG2198@2|Bacteria,1RI91@1224|Proteobacteria,2UDSX@28211|Alphaproteobacteria,3K0NW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine Phosphotransfer domain	-	-	-	-	-	-	-	-	-	-	-	-	Hpt
SX3_k127_3854214_10	1297865.APJD01000047_gene4776	1.962e-64	224.0	COG0633@1|root,COG0633@2|Bacteria,1RHDC@1224|Proteobacteria,2U97J@28211|Alphaproteobacteria,3JYP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	2Fe-2S iron-sulfur cluster binding domain	fdx	-	-	ko:K04755	-	-	-	-	ko00000	-	-	-	Fer2
SX3_k127_3854214_8	1297865.APJD01000047_gene4775	4.158e-101	330.0	COG0824@1|root,COG0824@2|Bacteria,1MZFI@1224|Proteobacteria,2U5Q6@28211|Alphaproteobacteria,3JSEZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Acyl-ACP thioesterase	MA20_08165	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT,4HBT_2,Acyl-ACP_TE
SX3_k127_3854214_4	1297865.APJD01000047_gene4774	2.487e-225	698.0	COG0492@1|root,COG0492@2|Bacteria,1MW14@1224|Proteobacteria,2TSKU@28211|Alphaproteobacteria,3JTH2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Ferredoxin--NADP reductase	MA20_08170	-	1.8.1.9	ko:K00384	ko00450,map00450	-	R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_3
SX3_k127_3854214_7	1297865.APJD01000047_gene4773	7.856e-121	390.0	COG4731@1|root,COG4731@2|Bacteria,1N19Y@1224|Proteobacteria,2TVR6@28211|Alphaproteobacteria,3JVZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2147)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2147
SX3_k127_3854214_1	1297865.APJD01000047_gene4772	0.0	1296.0	2A2JU@1|root,30QXU@2|Bacteria,1N7N4@1224|Proteobacteria,2TTU2@28211|Alphaproteobacteria,3JR2N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_08245	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3854214_3	1297865.APJD01000047_gene4771	2.264e-228	707.0	COG0392@1|root,COG0392@2|Bacteria,1MXH9@1224|Proteobacteria,2TUMC@28211|Alphaproteobacteria,3JSC9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	integral membrane protein	MA20_08250	-	2.3.2.3	ko:K07027,ko:K14205	ko01503,ko02020,ko05150,map01503,map02020,map05150	M00726	-	-	ko00000,ko00001,ko00002,ko01000,ko01504,ko02000	2.A.1.3.37,4.D.2	-	-	DUF2156,LPG_synthase_TM
SX3_k127_3854214_2	172088.AUGA01000011_gene2599	2.262e-262	814.0	COG0477@1|root,COG0477@2|Bacteria,1MWXZ@1224|Proteobacteria,2TT27@28211|Alphaproteobacteria,3JVI0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	ko:K08166	-	-	-	-	ko00000,ko02000	2.A.1.3.10	-	-	MFS_1
SX3_k127_3854214_0	1297865.APJD01000034_gene2372	0.0	1579.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JT1X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Bacterial signalling protein N terminal repeat	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_7,PAS_8,dCache_1
SX3_k127_3854214_11	1297865.APJD01000034_gene2373	2.458e-32	130.0	2A6R0@1|root,30VJ3@2|Bacteria,1RA61@1224|Proteobacteria,2U5QX@28211|Alphaproteobacteria,3JY2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_08270	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3854214_14	1297865.APJD01000034_gene2372	4.529e-06	52.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JT1X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Bacterial signalling protein N terminal repeat	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_7,PAS_8,dCache_1
SX3_k127_3854214_6	1380355.JNIJ01000040_gene5205	2.323e-123	404.0	COG2267@1|root,COG2267@2|Bacteria,1N8UK@1224|Proteobacteria,2U35V@28211|Alphaproteobacteria,3JX10@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_3854214_13	323098.Nwi_0371	4.15e-06	51.0	COG2801@1|root,COG2801@2|Bacteria	2|Bacteria	L	transposition	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,rve,rve_3
SX3_k127_3854214_12	1297865.APJD01000034_gene2375	1.897e-15	76.0	2A6R0@1|root,30VJ3@2|Bacteria,1RA61@1224|Proteobacteria,2U5QX@28211|Alphaproteobacteria,3JY2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_08270	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3857533_7	1297865.APJD01000011_gene6742	4.28e-22	95.0	COG0730@1|root,COG0730@2|Bacteria,1MWX2@1224|Proteobacteria,2TRIC@28211|Alphaproteobacteria,3JTKX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	membrane transporter protein	MA20_19835	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_3857533_4	1297865.APJD01000011_gene6741	3.061e-165	522.0	2AFUA@1|root,315WQ@2|Bacteria,1NHGB@1224|Proteobacteria,2TQWW@28211|Alphaproteobacteria,3JS8S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative transmembrane protein (Alph_Pro_TM)	MA20_19830	-	-	-	-	-	-	-	-	-	-	-	Alph_Pro_TM
SX3_k127_3857533_0	1297865.APJD01000011_gene6740	2.346e-282	869.0	COG0160@1|root,COG0160@2|Bacteria,1MWY6@1224|Proteobacteria,2TUDG@28211|Alphaproteobacteria,3JWJF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	gabT	-	2.6.1.19,2.6.1.22,4.1.1.64	ko:K00596,ko:K07250	ko00250,ko00280,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00280,map00410,map00640,map00650,map01100,map01120	M00027	R00908,R01648,R04188	RC00006,RC00062,RC00160	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
SX3_k127_3857533_6	1297865.APJD01000011_gene6739	2.281e-98	321.0	COG1522@1|root,COG1522@2|Bacteria,1RD8W@1224|Proteobacteria,2U4RV@28211|Alphaproteobacteria,3JXW0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Lrp/AsnC ligand binding domain	-	-	-	-	-	-	-	-	-	-	-	-	AsnC_trans_reg,HTH_24
SX3_k127_3857533_2	1297865.APJD01000011_gene6738	6.962e-185	582.0	COG0697@1|root,COG0697@2|Bacteria,1MXCD@1224|Proteobacteria,2TR27@28211|Alphaproteobacteria,3JRGT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_19820	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_3857533_3	1297865.APJD01000011_gene6737	4.312e-179	561.0	COG0583@1|root,COG0583@2|Bacteria,1PR6U@1224|Proteobacteria,2TUC6@28211|Alphaproteobacteria,3JR6A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3857533_8	224911.27354970	2.681e-05	51.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_3857533_5	1297865.APJD01000011_gene6736	3.631e-141	449.0	COG1407@1|root,COG1407@2|Bacteria,1RC5G@1224|Proteobacteria,2TU2T@28211|Alphaproteobacteria,3JTFP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase	MA20_22045	-	-	ko:K06953	-	-	-	-	ko00000	-	-	-	Metallophos
SX3_k127_3857533_1	1297865.APJD01000011_gene6735	3.832e-282	868.0	COG1201@1|root,COG1201@2|Bacteria,1MUSW@1224|Proteobacteria,2TR7V@28211|Alphaproteobacteria,3JRG1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DEAD/H associated	lhr	-	-	ko:K03724	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DEAD,DEAD_assoc,Helicase_C
SX3_k127_3871662_5	1297865.APJD01000019_gene3115	2.269e-167	527.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2TSWB@28211|Alphaproteobacteria,3JR57@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	2-keto-4-pentenoate hydratase	-	-	4.2.1.80	ko:K02554	ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220	M00545,M00569	R02601,R04781	RC00750,RC01213	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
SX3_k127_3871662_8	1230476.C207_02167	1.189e-112	364.0	COG3786@1|root,COG3786@2|Bacteria,1RH22@1224|Proteobacteria,2U992@28211|Alphaproteobacteria,3JY74@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_3871662_7	172088.AUGA01000016_gene2473	7.011e-143	455.0	COG0745@1|root,COG0745@2|Bacteria,1MU3A@1224|Proteobacteria,2TR97@28211|Alphaproteobacteria,3JTWV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulator, winged helix family	mtrA	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
SX3_k127_3871662_11	1297865.APJD01000019_gene3118	2.406e-82	274.0	COG0664@1|root,COG0664@2|Bacteria,1RDKD@1224|Proteobacteria,2U76S@28211|Alphaproteobacteria,3JY2I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Cyclic nucleotide-monophosphate binding domain	MA20_24885	-	-	-	-	-	-	-	-	-	-	-	cNMP_binding
SX3_k127_3871662_3	1297865.APJD01000019_gene3119	1.025e-185	580.0	COG0708@1|root,COG0708@2|Bacteria,1MVMC@1224|Proteobacteria,2TRWQ@28211|Alphaproteobacteria,3JQMZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	exodeoxyribonuclease III	xthA2	-	3.1.11.2	ko:K01142	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exo_endo_phos
SX3_k127_3871662_4	1297865.APJD01000019_gene3120	1.299e-168	534.0	COG2834@1|root,COG2834@2|Bacteria,1RA1S@1224|Proteobacteria,2U58W@28211|Alphaproteobacteria,3JR1T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)	lolA	-	-	-	-	-	-	-	-	-	-	-	LolA
SX3_k127_3871662_0	1297865.APJD01000019_gene3121	0.0	1608.0	COG1674@1|root,COG1674@2|Bacteria,1MVPI@1224|Proteobacteria,2TR48@28211|Alphaproteobacteria,3JTM7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Ftsk_gamma	ftsK	-	-	ko:K03466	-	-	-	-	ko00000,ko03036	3.A.12	-	-	FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma
SX3_k127_3871662_2	1297865.APJD01000019_gene3122	3.346e-266	821.0	COG0436@1|root,COG0436@2|Bacteria,1MWS8@1224|Proteobacteria,2TQVM@28211|Alphaproteobacteria,3JUEF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class I and II	dapL	-	2.6.1.17	ko:K14261,ko:K14267	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R04475	RC00006	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
SX3_k127_3871662_9	1297865.APJD01000019_gene3123	2.71e-103	337.0	COG1051@1|root,COG1051@2|Bacteria,1RH1H@1224|Proteobacteria,2U6J2@28211|Alphaproteobacteria,3JYB7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	NUDIX domain	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_3871662_6	1297865.APJD01000019_gene3124	6.844e-154	493.0	COG2199@1|root,COG2199@2|Bacteria,1RBN7@1224|Proteobacteria,2U6FT@28211|Alphaproteobacteria,3JYNX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF
SX3_k127_3871662_10	1297865.APJD01000019_gene3125	1.943e-89	295.0	COG3791@1|root,COG3791@2|Bacteria,1RAJQ@1224|Proteobacteria,2U5ME@28211|Alphaproteobacteria,3JY8E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
SX3_k127_3871662_1	1297865.APJD01000019_gene3126	3.443e-308	945.0	COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,2TT2J@28211|Alphaproteobacteria,3JTTP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ammonium Transporter	amtB	GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008519,GO:0015075,GO:0015291,GO:0015292,GO:0015669,GO:0015670,GO:0015696,GO:0015893,GO:0016020,GO:0016021,GO:0019755,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0042221,GO:0042493,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072488,GO:0098655	-	ko:K03320	-	-	-	-	ko00000,ko02000	1.A.11	-	-	Ammonium_transp
SX3_k127_3871662_12	224911.27348861	9.518e-67	228.0	COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,2U952@28211|Alphaproteobacteria,3JYV3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the P(II) protein family	glnK	-	-	ko:K04751,ko:K04752	ko02020,map02020	-	-	-	ko00000,ko00001	-	-	-	P-II
SX3_k127_387234_10	1230476.C207_04688	0.0001651	44.0	COG0621@1|root,COG0621@2|Bacteria,1MUCS@1224|Proteobacteria,2TRYD@28211|Alphaproteobacteria,3JTP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	MiaB-like tRNA modifying enzyme	mtaB	GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035598,GO:0035600,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050497,GO:0071704,GO:0090304,GO:1901360	2.8.4.5	ko:K18707	-	-	R10649	RC00003,RC03221	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,UPF0004
SX3_k127_387234_3	1297865.APJD01000011_gene6685	4.554e-244	754.0	COG1960@1|root,COG1960@2|Bacteria,1MUBH@1224|Proteobacteria,2TSKH@28211|Alphaproteobacteria,3JR54@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	MA20_18565	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_387234_2	1297865.APJD01000011_gene6684	1.764e-268	827.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TQRA@28211|Alphaproteobacteria,3JV0K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	MA20_18570	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_387234_4	1297865.APJD01000011_gene6683	1.891e-237	761.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,3JR1V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_18575	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_387234_1	1297865.APJD01000011_gene6682	0.0	1142.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JU6X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_18580	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_387234_9	258594.RPA0210	3.95e-05	46.0	COG0564@1|root,COG0564@2|Bacteria,1MVJ5@1224|Proteobacteria,2TSCG@28211|Alphaproteobacteria,3JRTQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Pseudouridine synthase	MA20_43745	-	5.4.99.28,5.4.99.29	ko:K06177	-	-	-	-	ko00000,ko01000,ko03009,ko03016	-	-	-	PseudoU_synth_2
SX3_k127_387234_0	1230476.C207_03168	0.0	1341.0	COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TS8E@28211|Alphaproteobacteria,3JRUN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	pimF	-	1.1.1.35	ko:K07516	ko00071,ko00362,ko00650,ko01100,ko01120,ko01200,ko01212,map00071,map00362,map00650,map01100,map01120,map01200,map01212	M00087	R01975,R04737,R04739,R04741,R04743,R04745,R04748,R05305	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	3HCDH,3HCDH_N,ECH_1
SX3_k127_387234_5	1297865.APJD01000011_gene6680	5.147e-185	580.0	COG1414@1|root,COG1414@2|Bacteria,1MXRJ@1224|Proteobacteria,2TSJ7@28211|Alphaproteobacteria,3JSG4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix isocitrate lyase regulation	MA20_18590	-	-	ko:K05818	-	-	-	-	ko00000,ko03000	-	-	-	HTH_IclR,IclR
SX3_k127_387234_6	1297865.APJD01000011_gene6679	5.046e-169	532.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TSE7@28211|Alphaproteobacteria,3JRVG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	amino acid	livG	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_387234_8	1297865.APJD01000011_gene6678	2.321e-147	470.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2U1BU@28211|Alphaproteobacteria,3JSYB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	MA20_18600	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_387234_7	1297865.APJD01000011_gene6677	3.63e-168	529.0	COG0559@1|root,COG0559@2|Bacteria,1MXGK@1224|Proteobacteria,2TVKT@28211|Alphaproteobacteria,3JSJG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_18605	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_3874459_3	1297865.APJD01000010_gene5064	6.392e-320	980.0	COG0260@1|root,COG0260@2|Bacteria,1MUF9@1224|Proteobacteria,2TQU9@28211|Alphaproteobacteria,3JUA7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides	pepA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	3.4.11.1	ko:K01255	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M17,Peptidase_M17_N
SX3_k127_3874459_23	1297865.APJD01000010_gene5065	1.358e-95	313.0	COG2927@1|root,COG2927@2|Bacteria,1RGVC@1224|Proteobacteria,2U94V@28211|Alphaproteobacteria,3JY2F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase III, chi subunit	holC	-	2.7.7.7	ko:K02339	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_chi
SX3_k127_3874459_21	1297865.APJD01000010_gene5066	1.331e-104	341.0	293K0@1|root,2ZR1Z@2|Bacteria,1QXT6@1224|Proteobacteria,2U07A@28211|Alphaproteobacteria,3JZ3X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3874459_14	1297865.APJD01000010_gene5067	8.523e-175	550.0	COG0583@1|root,COG0583@2|Bacteria,1QYAP@1224|Proteobacteria,2U7F2@28211|Alphaproteobacteria,3K52F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	ko:K21699	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_3874459_19	1297865.APJD01000010_gene5068	5.44e-134	428.0	COG3665@1|root,COG3665@2|Bacteria,1N9DM@1224|Proteobacteria,2UIXE@28211|Alphaproteobacteria,3K13Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1989)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1989
SX3_k127_3874459_1	1297865.APJD01000010_gene5069	0.0	1204.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TQRZ@28211|Alphaproteobacteria,3JS3I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter	yheS	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363	-	ko:K06158	-	-	-	-	ko00000,ko03012	-	-	-	ABC_tran,ABC_tran_CTD,ABC_tran_Xtn
SX3_k127_3874459_25	1297865.APJD01000010_gene5070	1.871e-76	256.0	2A1D8@1|root,30PK9@2|Bacteria,1N02R@1224|Proteobacteria,2UDVM@28211|Alphaproteobacteria,3K03J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3874459_24	1297865.APJD01000010_gene5071	8.203e-84	280.0	COG0105@1|root,COG0105@2|Bacteria,1R9ZA@1224|Proteobacteria,2U5CS@28211|Alphaproteobacteria,3JY2D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate	ndk	GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564	2.7.4.6	ko:K00940	ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016	M00049,M00050,M00052,M00053	R00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895	RC00002	ko00000,ko00001,ko00002,ko01000,ko04131	-	-	-	NDK
SX3_k127_3874459_15	1297865.APJD01000010_gene5072	4.293e-167	528.0	COG0861@1|root,COG0861@2|Bacteria,1QZU6@1224|Proteobacteria,2TURK@28211|Alphaproteobacteria,3JQTZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Integral membrane protein TerC family	MA20_28265	-	-	-	-	-	-	-	-	-	-	-	TerC
SX3_k127_3874459_4	1230476.C207_05537	4.436e-314	963.0	COG0248@1|root,COG0248@2|Bacteria,1MV35@1224|Proteobacteria,2TR1W@28211|Alphaproteobacteria,3JSEE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	FP	Ppx/GppA phosphatase family	ppx	-	3.6.1.11,3.6.1.40	ko:K01524	ko00230,map00230	-	R03409	RC00002	ko00000,ko00001,ko01000	-	-	-	Ppx-GppA
SX3_k127_3874459_0	1297865.APJD01000010_gene5074	0.0	1463.0	COG0855@1|root,COG0855@2|Bacteria,1MUM3@1224|Proteobacteria,2TRBP@28211|Alphaproteobacteria,3JTTT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)	ppk	-	2.7.4.1	ko:K00937	ko00190,ko03018,map00190,map03018	-	-	-	ko00000,ko00001,ko01000,ko03019	-	-	-	PP_kinase,PP_kinase_C,PP_kinase_N
SX3_k127_3874459_20	1297865.APJD01000010_gene5075	4.452e-133	425.0	COG0593@1|root,COG0593@2|Bacteria,1N4PG@1224|Proteobacteria,2U96K@28211|Alphaproteobacteria,3JQY4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Bacterial dnaA  protein	hda	-	-	-	-	-	-	-	-	-	-	-	Bac_DnaA
SX3_k127_3874459_22	1297865.APJD01000010_gene5076	1.512e-104	340.0	COG0558@1|root,COG0558@2|Bacteria,1MZ8B@1224|Proteobacteria,2U7AP@28211|Alphaproteobacteria,3JT6T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	CDP-alcohol phosphatidyltransferase	MA20_28295	-	2.7.8.41,2.7.8.5	ko:K00995,ko:K08744	ko00564,ko01100,map00564,map01100	-	R01801,R02030	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000	-	-	-	CDP-OH_P_transf
SX3_k127_3874459_10	1297865.APJD01000010_gene5077	3.345e-236	731.0	COG0150@1|root,COG0150@2|Bacteria,1MURG@1224|Proteobacteria,2TR6G@28211|Alphaproteobacteria,3JRRD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Phosphoribosylformylglycinamidine cyclo-ligase	purM	-	6.3.3.1	ko:K01933	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04208	RC01100	ko00000,ko00001,ko00002,ko01000	-	-	-	AIRS,AIRS_C
SX3_k127_3874459_18	1297865.APJD01000010_gene5078	1.556e-139	444.0	COG0299@1|root,COG0299@2|Bacteria,1MWN1@1224|Proteobacteria,2TRY6@28211|Alphaproteobacteria,3JS16@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate	purN	GO:0003674,GO:0003824,GO:0004644,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716	2.1.2.2	ko:K11175	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	M00048	R04325,R04326	RC00026,RC00197,RC01128	ko00000,ko00001,ko00002,ko01000	-	-	-	Formyl_trans_N,YjbR
SX3_k127_3874459_26	1297865.APJD01000010_gene5079	6.363e-38	142.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,3K08P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	'Cold-shock' DNA-binding domain	MA20_28310	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
SX3_k127_3874459_7	1297865.APJD01000010_gene5080	1.078e-248	771.0	COG0349@1|root,COG0349@2|Bacteria,1MURV@1224|Proteobacteria,2TSQM@28211|Alphaproteobacteria,3JRYY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides	rnd	-	3.1.13.5	ko:K03684	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DNA_pol_A_exo1,HRDC
SX3_k127_3874459_16	1297865.APJD01000010_gene5081	3.366e-153	488.0	COG1414@1|root,COG1414@2|Bacteria,1QRZN@1224|Proteobacteria,2TU6N@28211|Alphaproteobacteria,3JW87@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial transcriptional regulator	-	-	-	ko:K05818	-	-	-	-	ko00000,ko03000	-	-	-	HTH_IclR,IclR
SX3_k127_3874459_2	1297865.APJD01000010_gene5082	0.0	1041.0	COG0654@1|root,COG0654@2|Bacteria,1MX9R@1224|Proteobacteria,2TR4U@28211|Alphaproteobacteria,3JSWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.14.13.127	ko:K05712,ko:K20218	ko00360,ko00623,ko01120,ko01220,map00360,map00623,map01120,map01220	M00545	R06786,R06787,R11197,R11198	RC00236,RC00389	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_3874459_13	1297865.APJD01000010_gene5083	1.226e-183	578.0	COG0179@1|root,COG0179@2|Bacteria,1MUPF@1224|Proteobacteria,2TQMB@28211|Alphaproteobacteria,3JVFH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	MA20_35800	-	-	-	-	-	-	-	-	-	-	-	DUF2437,FAA_hydrolase
SX3_k127_3874459_11	1297865.APJD01000010_gene5084	2.565e-227	704.0	COG0346@1|root,COG0346@2|Bacteria,1P5FR@1224|Proteobacteria,2TVCC@28211|Alphaproteobacteria,3JSK6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	MA20_35815	-	1.13.11.25	ko:K16049	ko00984,ko01100,ko01120,ko01220,map00984,map01100,map01120,map01220	-	R04597	RC01610	ko00000,ko00001,ko01000	-	-	-	Glyoxalase
SX3_k127_3874459_8	1297865.APJD01000010_gene5085	2.864e-248	769.0	COG0683@1|root,COG0683@2|Bacteria,1R7SA@1224|Proteobacteria,2TVB2@28211|Alphaproteobacteria,3JVD7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_3874459_9	1297865.APJD01000010_gene5086	2.161e-243	754.0	COG1835@1|root,COG1835@2|Bacteria,1RDQ4@1224|Proteobacteria,2TUH3@28211|Alphaproteobacteria,3JW57@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_3874459_6	1297865.APJD01000010_gene5087	1.624e-251	778.0	COG2059@1|root,COG2059@2|Bacteria,1MUBW@1224|Proteobacteria,2TRXF@28211|Alphaproteobacteria,3JSVF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TIGRFAM chromate transporter, chromate ion transporter (CHR) family	chrA	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
SX3_k127_3874459_12	1297865.APJD01000010_gene5088	4.372e-188	589.0	COG0679@1|root,COG0679@2|Bacteria,1PINE@1224|Proteobacteria,2TUJR@28211|Alphaproteobacteria,3JUID@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Membrane transport protein	-	-	-	ko:K07088	-	-	-	-	ko00000	-	-	-	Mem_trans
SX3_k127_3874459_17	196490.AUEZ01000007_gene5188	7.505e-152	484.0	COG0583@1|root,COG0583@2|Bacteria,1MXRP@1224|Proteobacteria,2TRVK@28211|Alphaproteobacteria,3JXGG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_3874459_5	1297865.APJD01000010_gene5090	1.935e-277	854.0	COG0471@1|root,COG0471@2|Bacteria,1N58G@1224|Proteobacteria,2TU92@28211|Alphaproteobacteria,3K3MM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sodium:sulfate symporter transmembrane region	-	-	-	-	-	-	-	-	-	-	-	-	Na_sulph_symp
SX3_k127_388588_5	1297865.APJD01000001_gene5824	8.587e-69	233.0	2EEYW@1|root,338S4@2|Bacteria,1RJ3V@1224|Proteobacteria,2U9IG@28211|Alphaproteobacteria,3JZEW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_388588_1	1297865.APJD01000001_gene5823	3.758e-164	517.0	COG3910@1|root,COG3910@2|Bacteria,1MZSY@1224|Proteobacteria,2TRH5@28211|Alphaproteobacteria,3JUGH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_21,AAA_23
SX3_k127_388588_2	1297865.APJD01000001_gene5821	1.454e-149	475.0	COG0664@1|root,COG0664@2|Bacteria,1RAT0@1224|Proteobacteria,2VFE4@28211|Alphaproteobacteria,3JXE6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Crp-like helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2,cNMP_binding
SX3_k127_388588_3	1297865.APJD01000001_gene5820	5.493e-107	348.0	COG3832@1|root,COG3832@2|Bacteria,1RD9A@1224|Proteobacteria,2U76G@28211|Alphaproteobacteria,3JT7B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
SX3_k127_388588_0	1297865.APJD01000001_gene5819	7.257e-190	606.0	COG3391@1|root,COG3391@2|Bacteria,1MXJJ@1224|Proteobacteria,2TTH6@28211|Alphaproteobacteria,3JUP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cytochrome D1 heme domain	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_D1,Lactonase,NHL
SX3_k127_388588_4	1297865.APJD01000001_gene5818	2.595e-76	257.0	COG2764@1|root,COG2764@2|Bacteria	2|Bacteria	E	glyoxalase bleomycin resistance protein dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_3889665_2	1297865.APJD01000014_gene582	0.0	1552.0	COG5009@1|root,COG5009@2|Bacteria,1MU5A@1224|Proteobacteria,2USBB@28211|Alphaproteobacteria,3JV26@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-binding protein OB-like domain	mrcA	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	PCB_OB,Transgly,Transpeptidase
SX3_k127_3889665_6	1297865.APJD01000014_gene581	1.001e-209	657.0	COG2207@1|root,COG2207@2|Bacteria,1Q1II@1224|Proteobacteria,2TUE0@28211|Alphaproteobacteria,3JS0J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_3889665_10	1297865.APJD01000014_gene579	5.189e-84	279.0	COG0454@1|root,COG0456@2|Bacteria,1RKJA@1224|Proteobacteria,2U6F2@28211|Alphaproteobacteria,3JYAR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_10
SX3_k127_3889665_5	1297865.APJD01000014_gene578	5.639e-221	690.0	COG2140@1|root,COG2140@2|Bacteria,1MUZA@1224|Proteobacteria,2TTMU@28211|Alphaproteobacteria,3JTKQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Cupin	oxdD	-	4.1.1.2	ko:K01569	ko00630,ko01100,map00630,map01100	-	R00522	RC00321	ko00000,ko00001,ko01000	-	-	-	Cupin_1
SX3_k127_3889665_4	1297865.APJD01000014_gene577	2.613e-226	705.0	COG0834@1|root,COG0834@2|Bacteria,1NN6F@1224|Proteobacteria,2TSA4@28211|Alphaproteobacteria,3JVI5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Ligand-gated ion channel	-	-	-	-	-	-	-	-	-	-	-	-	Ion_trans_2,Lig_chan,SBP_bac_3
SX3_k127_3889665_7	1297865.APJD01000014_gene576	1.527e-130	417.0	COG1309@1|root,COG1309@2|Bacteria,1MYVX@1224|Proteobacteria,2U4K5@28211|Alphaproteobacteria,3JS4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_3889665_1	1297865.APJD01000014_gene575	0.0	1620.0	COG3119@1|root,COG3119@2|Bacteria,1MV92@1224|Proteobacteria,2TTXG@28211|Alphaproteobacteria,3JVJZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sulfatase	-	-	3.1.6.1	ko:K01130	ko00140,ko00600,map00140,map00600	-	R03980,R04856	RC00128,RC00231	ko00000,ko00001,ko01000	-	-	-	Sulfatase
SX3_k127_3889665_8	1297865.APJD01000014_gene574	7.501e-112	362.0	COG5342@1|root,COG5342@2|Bacteria,1R6BT@1224|Proteobacteria,2U1ZG@28211|Alphaproteobacteria,3JTCZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Invasion associated locus B (IalB) protein	ialB	-	-	-	-	-	-	-	-	-	-	-	IalB
SX3_k127_3889665_0	1297865.APJD01000014_gene573	0.0	1985.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JQMT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	MA20_27115	-	-	ko:K03296	-	-	-	-	ko00000	2.A.6.2	-	-	ACR_tran
SX3_k127_3889665_3	1297865.APJD01000014_gene572	2.204e-233	725.0	COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,2TSB6@28211|Alphaproteobacteria,3JR4W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	MA20_27120	-	-	ko:K07799,ko:K18990	ko02020,map02020	M00648,M00720	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2.30,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_3889665_9	1297865.APJD01000014_gene571	5.201e-88	293.0	COG1846@1|root,COG1846@2|Bacteria,1MZY5@1224|Proteobacteria,2U7EH@28211|Alphaproteobacteria,3JYT3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR
SX3_k127_3889665_12	398525.KB900701_gene4317	1.618e-41	154.0	2FCZ8@1|root,3451W@2|Bacteria,1MZPY@1224|Proteobacteria,2UC7N@28211|Alphaproteobacteria,3K06U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_27125	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3922512_2	1297865.APJD01000001_gene5905	4.389e-113	366.0	COG1509@1|root,COG1509@2|Bacteria,1MUPJ@1224|Proteobacteria,2TT31@28211|Alphaproteobacteria,3JQS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Lysine-2,3-aminomutase	kamA	-	5.4.3.2	ko:K01843	ko00310,map00310	-	R00461	RC00303	ko00000,ko00001,ko01000	-	-	-	Fer4_12,Fer4_14,LAM_C,Radical_SAM
SX3_k127_3922512_0	1297865.APJD01000001_gene5906	1.015e-229	711.0	COG2269@1|root,COG2269@2|Bacteria,1MU97@1224|Proteobacteria,2TRD4@28211|Alphaproteobacteria,3JRU7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	tRNA synthetases class II (D, K and N)	genX	-	-	ko:K04568	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	tRNA-synt_2
SX3_k127_3922512_1	1297865.APJD01000001_gene5907	2.683e-113	376.0	COG0231@1|root,COG0231@2|Bacteria,1MW2J@1224|Proteobacteria,2TUWE@28211|Alphaproteobacteria,3JQUE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase	efp	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576	-	ko:K02356	-	-	-	-	ko00000,ko03012	-	-	-	EFP,EFP_N,Elong-fact-P_C
SX3_k127_3922512_3	398525.KB900701_gene4755	7.615e-31	124.0	COG0739@1|root,COG0739@2|Bacteria,1QGHU@1224|Proteobacteria,2TUF9@28211|Alphaproteobacteria,3JR95@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
SX3_k127_3924101_1	1297865.APJD01000007_gene2311	3.126e-310	949.0	COG2072@1|root,COG2072@2|Bacteria,1NSY9@1224|Proteobacteria,2TUSD@28211|Alphaproteobacteria,3JUMD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	MA20_26775	-	1.14.13.22	ko:K03379	ko00930,ko01120,ko01220,map00930,map01120,map01220	-	R02231,R06622	RC00662,RC01550	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_3
SX3_k127_3924101_0	1297865.APJD01000007_gene2312	0.0	1326.0	COG2015@1|root,COG2015@2|Bacteria,1MU82@1224|Proteobacteria,2TSM1@28211|Alphaproteobacteria,3JSM0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Alkyl sulfatase dimerisation	MA20_17395	-	-	-	-	-	-	-	-	-	-	-	Alkyl_sulf_C,Alkyl_sulf_dimr,Lactamase_B
SX3_k127_3924101_8	1125863.JAFN01000001_gene1061	8.263e-76	261.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,42MSC@68525|delta/epsilon subdivisions,2WJAH@28221|Deltaproteobacteria	28221|Deltaproteobacteria	E	ABC transporter related	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_3924101_7	172088.AUGA01000002_gene5949	6.131e-147	467.0	COG0411@1|root,COG0411@2|Bacteria,1MUFT@1224|Proteobacteria,2TVRQ@28211|Alphaproteobacteria,3K5X3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_3924101_5	1297865.APJD01000007_gene2315	3.31e-207	654.0	COG4177@1|root,COG4177@2|Bacteria,1R65P@1224|Proteobacteria,2TU6V@28211|Alphaproteobacteria,3JSC0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_3924101_6	1297865.APJD01000007_gene2316	2.393e-170	537.0	COG0559@1|root,COG0559@2|Bacteria,1N5XH@1224|Proteobacteria,2TSH5@28211|Alphaproteobacteria,3JS3Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_3924101_2	1297865.APJD01000007_gene2317	2.319e-265	819.0	COG0683@1|root,COG0683@2|Bacteria,1MWQB@1224|Proteobacteria,2VEZM@28211|Alphaproteobacteria,3K6D9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_3924101_4	1297865.APJD01000007_gene2318	8.501e-235	728.0	COG0438@1|root,COG0438@2|Bacteria,1MWSZ@1224|Proteobacteria,2TQQK@28211|Alphaproteobacteria,3JT3F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyltransferase Family 4	MA20_17390	-	2.4.1.348	ko:K12995	-	-	-	-	ko00000,ko01000,ko01003,ko01005	-	GT4	-	Glyco_transf_4,Glycos_transf_1
SX3_k127_3924101_3	1297865.APJD01000007_gene2319	3.678e-257	797.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,3JQZ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter transmembrane region	MA20_17385	-	-	ko:K06147,ko:K18893	ko02010,map02010	-	-	-	ko00000,ko00001,ko02000	3.A.1,3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_3925615_7	1297865.APJD01000003_gene6342	3.365e-108	353.0	COG2207@1|root,COG2207@2|Bacteria,1Q1BF@1224|Proteobacteria,2U14T@28211|Alphaproteobacteria,3JU1B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_3925615_6	1297865.APJD01000003_gene6341	1.267e-138	445.0	COG1335@1|root,COG1335@2|Bacteria,1QU95@1224|Proteobacteria,2TWZY@28211|Alphaproteobacteria,3JTD8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
SX3_k127_3925615_3	1230476.C207_02787	1.479e-257	797.0	COG0683@1|root,COG0683@2|Bacteria,1QN5S@1224|Proteobacteria,2TRVN@28211|Alphaproteobacteria,3JVB4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	MA20_22640	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_3925615_2	1297865.APJD01000003_gene6339	2.151e-265	818.0	COG2124@1|root,COG2124@2|Bacteria,1MY2E@1224|Proteobacteria,2TTFN@28211|Alphaproteobacteria,3JSSY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	MA20_22650	GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0006805,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0016491,GO:0016705,GO:0018690,GO:0020037,GO:0042221,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071466,GO:0097159,GO:1901363	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_3925615_8	1297865.APJD01000003_gene6338	3.066e-107	347.0	COG1846@1|root,COG1846@2|Bacteria,1N1CJ@1224|Proteobacteria,2U17H@28211|Alphaproteobacteria,3JV32@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	MA20_22655	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_3925615_0	1297865.APJD01000003_gene6337	0.0	1242.0	COG0318@1|root,COG0318@2|Bacteria,1MUQZ@1224|Proteobacteria,2TRV7@28211|Alphaproteobacteria,3JSE9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	-	-	6.2.1.34	ko:K12508	-	-	-	-	ko00000,ko01000	-	-	-	AMP-binding
SX3_k127_3925615_9	1297865.APJD01000003_gene6336	8.25e-105	342.0	COG1846@1|root,COG1846@2|Bacteria,1N7PQ@1224|Proteobacteria,2UF5S@28211|Alphaproteobacteria,3JRI5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_3925615_1	1297865.APJD01000003_gene6335	0.0	1127.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TR00@28211|Alphaproteobacteria,3JVVN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	MA20_22670	-	3.5.1.54	ko:K01457	ko00220,ko00791,ko01100,ko01120,map00220,map00791,map01100,map01120	-	R00005	RC02756	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_3925615_5	1297865.APJD01000003_gene6334	6.264e-150	475.0	COG1802@1|root,COG1802@2|Bacteria,1RBIC@1224|Proteobacteria,2U60T@28211|Alphaproteobacteria,3JUSB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	MA20_22675	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_3925615_10	1297865.APJD01000003_gene6333	4.96e-79	269.0	COG4319@1|root,COG4319@2|Bacteria,1RD4M@1224|Proteobacteria,2UA09@28211|Alphaproteobacteria,3JY8P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3225)	MA20_22680	-	-	-	-	-	-	-	-	-	-	-	DUF3225
SX3_k127_3925615_4	1297865.APJD01000003_gene6332	4.638e-252	778.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TU3V@28211|Alphaproteobacteria,3JRDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	MA20_22685	-	3.5.1.84,6.3.5.6,6.3.5.7	ko:K02433,ko:K19837	ko00791,ko00970,ko01100,ko01120,map00791,map00970,map01100,map01120	-	R03905,R04212,R05563	RC00010,RC01287	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
SX3_k127_393856_0	1297865.APJD01000003_gene6130	0.0	1736.0	COG1572@1|root,COG2755@1|root,COG2931@1|root,COG3210@1|root,COG4932@1|root,COG1572@2|Bacteria,COG2755@2|Bacteria,COG2931@2|Bacteria,COG3210@2|Bacteria,COG4932@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,3JWUW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	QU	COG2931 RTX toxins and related Ca2 -binding proteins	-	-	-	-	-	-	-	-	-	-	-	-	Cadherin,HemolysinCabind
SX3_k127_393856_10	1297865.APJD01000003_gene6129	1.941e-106	345.0	COG4675@1|root,COG4675@2|Bacteria,1MZY9@1224|Proteobacteria,2U61A@28211|Alphaproteobacteria,3K648@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phage Tail Collar Domain	-	-	-	-	-	-	-	-	-	-	-	-	Collar
SX3_k127_393856_9	1297865.APJD01000003_gene6128	2.029e-108	351.0	COG4675@1|root,COG4675@2|Bacteria,1MZY9@1224|Proteobacteria,2UC68@28211|Alphaproteobacteria,3JYHF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phage Tail Collar Domain	-	-	-	-	-	-	-	-	-	-	-	-	Collar
SX3_k127_393856_8	1297865.APJD01000003_gene6127	1.208e-109	355.0	COG4675@1|root,COG4675@2|Bacteria,1MZY9@1224|Proteobacteria,2U8Y9@28211|Alphaproteobacteria,3JYKH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phage Tail Collar Domain	-	-	-	-	-	-	-	-	-	-	-	-	Collar
SX3_k127_393856_7	1297865.APJD01000003_gene6126	1.528e-119	385.0	COG0454@1|root,COG0456@2|Bacteria,1N29T@1224|Proteobacteria,2UF3Q@28211|Alphaproteobacteria,3JYMP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FR47-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
SX3_k127_393856_3	1297865.APJD01000003_gene6124	5.912e-246	761.0	COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2TSX8@28211|Alphaproteobacteria,3JUVR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Iron-containing alcohol dehydrogenase	MA20_22910	-	1.3.1.32	ko:K00217	ko00361,ko00362,ko00364,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00364,map00623,map01100,map01120,map01220	-	R02988,R02989,R05355,R06848,R07781,R09137,R09138,R09223,R09224	RC00107,RC01335,RC01689,RC02442	ko00000,ko00001,ko01000	-	-	-	Fe-ADH
SX3_k127_393856_2	1297865.APJD01000003_gene6123	0.0	1071.0	COG0318@1|root,COG0318@2|Bacteria,1MUIC@1224|Proteobacteria,2TT3K@28211|Alphaproteobacteria,3JV64@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_22915	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_393856_4	1297865.APJD01000003_gene6122	4.598e-194	610.0	COG2175@1|root,COG2175@2|Bacteria,1R5TE@1224|Proteobacteria,2U2FJ@28211|Alphaproteobacteria,3JS34@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Taurine catabolism dioxygenase TauD, TfdA family	-	-	-	ko:K06912	ko00361,ko01120,ko01220,map00361,map01120,map01220	-	R05419,R05493	RC01371,RC01372	ko00000,ko00001,ko01000	-	-	-	TauD
SX3_k127_393856_1	1297865.APJD01000003_gene6121	0.0	1107.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TT1G@28211|Alphaproteobacteria,3JQQ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_393856_5	1297865.APJD01000003_gene6120	6.812e-192	601.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TRS8@28211|Alphaproteobacteria,3JS1M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	nikB	-	-	ko:K02033,ko:K15585	ko02010,ko02024,map02010,map02024	M00239,M00440	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_393856_6	1297865.APJD01000003_gene6119	2.977e-172	541.0	COG1173@1|root,COG1173@2|Bacteria,1MWMX@1224|Proteobacteria,2TRX5@28211|Alphaproteobacteria,3JRYA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_22930	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_3940308_3	1297865.APJD01000023_gene1161	1.482e-112	363.0	COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,2TQRT@28211|Alphaproteobacteria,3JQS9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	-	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_3940308_0	1297865.APJD01000023_gene1162	4.162e-248	769.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,3JR1V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	vraB	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_3940308_1	1297865.APJD01000023_gene1163	3.432e-235	733.0	COG1960@1|root,COG1960@2|Bacteria,1MUBH@1224|Proteobacteria,2TSKH@28211|Alphaproteobacteria,3JSA4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_3940308_2	1297865.APJD01000023_gene1164	1.015e-114	370.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TQRA@28211|Alphaproteobacteria,3JV5Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_3950537_1	172088.AUGA01000022_gene560	2.345e-272	842.0	COG0642@1|root,COG0745@1|root,COG0784@1|root,COG0840@1|root,COG1511@1|root,COG2203@1|root,COG0745@2|Bacteria,COG0784@2|Bacteria,COG0840@2|Bacteria,COG1511@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TWQB@28211|Alphaproteobacteria,3JQWC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Domain present in phytochromes and cGMP-specific phosphodiesterases.	MA20_07280	-	-	-	-	-	-	-	-	-	-	-	GAF_2,HATPase_c,HisKA,Response_reg
SX3_k127_3950537_7	1297865.APJD01000026_gene2492	9.362e-41	152.0	2AC9Z@1|root,311UQ@2|Bacteria,1N2DM@1224|Proteobacteria,2UCR4@28211|Alphaproteobacteria,3K0QF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3950537_5	1230476.C207_07050	1.695e-44	163.0	2AFU5@1|root,315WI@2|Bacteria,1NFFC@1224|Proteobacteria,2UGVX@28211|Alphaproteobacteria,3K16C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3950537_9	1230476.C207_07051	1.035e-27	112.0	2BP8N@1|root,32I07@2|Bacteria,1NAZD@1224|Proteobacteria,2UGSV@28211|Alphaproteobacteria,3K0WU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3072)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3072
SX3_k127_3950537_4	1297865.APJD01000026_gene2491	1.647e-46	169.0	29FGA@1|root,302DY@2|Bacteria,1N625@1224|Proteobacteria,2UEHR@28211|Alphaproteobacteria,3K0IZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3950537_6	1297865.APJD01000026_gene2490	2.589e-44	162.0	2A8P1@1|root,30XRM@2|Bacteria,1RGX3@1224|Proteobacteria,2UA8N@28211|Alphaproteobacteria,3JZEU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_28755	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3950537_0	1297865.APJD01000026_gene2489	0.0	1384.0	COG0210@1|root,COG0210@2|Bacteria,1MU0G@1224|Proteobacteria,2TQSC@28211|Alphaproteobacteria,3JSH5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	UvrD-like helicase C-terminal domain	uvrD	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UvrD-helicase,UvrD_C
SX3_k127_3950537_3	1297865.APJD01000026_gene2488	4.18e-50	178.0	2ADNE@1|root,313D7@2|Bacteria,1N6CH@1224|Proteobacteria,2UCFY@28211|Alphaproteobacteria,3K0KN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PilZ domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_3950537_2	1297865.APJD01000026_gene2487	5.628e-201	626.0	COG0477@1|root,COG2814@2|Bacteria,1QAIM@1224|Proteobacteria,2U3KU@28211|Alphaproteobacteria,3JW30@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
SX3_k127_3950537_8	1230476.C207_07056	3.301e-28	113.0	COG0477@1|root,COG2814@2|Bacteria,1QAIM@1224|Proteobacteria,2U3KU@28211|Alphaproteobacteria,3JW30@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
SX3_k127_3964394_0	1230476.C207_01729	1.691e-162	513.0	COG0566@1|root,COG0566@2|Bacteria,1MWCM@1224|Proteobacteria,2TUG7@28211|Alphaproteobacteria,3JQYK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family	rlmB	-	2.1.1.185	ko:K03218	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	SpoU_methylase,SpoU_sub_bind
SX3_k127_3964394_1	1297865.APJD01000014_gene755	4.528e-118	381.0	COG1309@1|root,COG1309@2|Bacteria,1R5GP@1224|Proteobacteria,2U5WC@28211|Alphaproteobacteria,3JVJ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_3964394_4	1297865.APJD01000014_gene756	4.743e-81	286.0	COG0251@1|root,COG0251@2|Bacteria,1RCX5@1224|Proteobacteria,2U74Y@28211|Alphaproteobacteria,3JYGB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	yjgH	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
SX3_k127_3964394_3	1297865.APJD01000014_gene757	1.621e-96	316.0	2A6SQ@1|root,30VKY@2|Bacteria,1RAG4@1224|Proteobacteria,2U5BI@28211|Alphaproteobacteria,3JYA3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3964394_2	1297865.APJD01000014_gene758	3.978e-97	318.0	28ZQ8@1|root,2ZMF7@2|Bacteria,1RGIF@1224|Proteobacteria,2TSYN@28211|Alphaproteobacteria,3JX91@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3971042_3	1297865.APJD01000018_gene5655	9.396e-148	469.0	COG3916@1|root,COG3916@2|Bacteria,1R87K@1224|Proteobacteria,2U3GS@28211|Alphaproteobacteria,3JWNW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	QT	Autoinducer synthase	traI	-	2.3.1.184	ko:K13060	ko00270,ko01100,ko02024,ko02025,map00270,map01100,map02024,map02025	-	R08940	RC00021,RC00039	ko00000,ko00001,ko01000	-	-	-	Autoind_synth
SX3_k127_3971042_1	1297865.APJD01000018_gene5654	6.916e-169	532.0	COG2771@1|root,COG2771@2|Bacteria,1N6UR@1224|Proteobacteria,2TWZ7@28211|Alphaproteobacteria,3JXHC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Autoinducer binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Autoind_bind,GerE
SX3_k127_3971042_4	1297865.APJD01000018_gene5653	8.893e-71	242.0	2A05A@1|root,30N82@2|Bacteria,1RG61@1224|Proteobacteria,2U88B@28211|Alphaproteobacteria,3JZ46@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3971042_0	1297865.APJD01000018_gene5652	1.037e-178	565.0	COG0697@1|root,COG0697@2|Bacteria,1MWSU@1224|Proteobacteria,2TSWT@28211|Alphaproteobacteria,3JT4H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	of the drug metabolite transporter (DMT) superfamily	MA20_03510	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_3971042_2	1297865.APJD01000018_gene5651	2.461e-167	526.0	COG1463@1|root,COG1463@2|Bacteria,1NA4F@1224|Proteobacteria,2TSAH@28211|Alphaproteobacteria,3JWHJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	MlaD protein	-	-	-	-	-	-	-	-	-	-	-	-	MlaD
SX3_k127_3981940_16	1297865.APJD01000007_gene2142	5.087e-59	207.0	COG2127@1|root,COG2127@2|Bacteria,1N0VF@1224|Proteobacteria,2UCNH@28211|Alphaproteobacteria,3JZDT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation	clpS	-	-	ko:K06891	-	-	-	-	ko00000	-	-	-	ClpS
SX3_k127_3981940_12	1297865.APJD01000007_gene2141	2.668e-132	428.0	2AD1D@1|root,312PF@2|Bacteria,1R6TN@1224|Proteobacteria,2TT3Q@28211|Alphaproteobacteria,3JRI8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3981940_7	1297865.APJD01000007_gene2140	1.05e-175	552.0	COG0697@1|root,COG0697@2|Bacteria,1RFZW@1224|Proteobacteria,2TRXD@28211|Alphaproteobacteria,3JRS9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_3981940_2	1297865.APJD01000007_gene2139	6.884e-262	811.0	COG2114@1|root,COG2114@2|Bacteria,1MWHK@1224|Proteobacteria,2TR2J@28211|Alphaproteobacteria,3JQNR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc
SX3_k127_3981940_3	1297865.APJD01000007_gene2137	1.955e-236	732.0	COG0082@1|root,COG0082@2|Bacteria,1MU98@1224|Proteobacteria,2TQY2@28211|Alphaproteobacteria,3JRF1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system	aroC	GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	4.2.3.5	ko:K01736	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R01714	RC00586	ko00000,ko00001,ko00002,ko01000	-	-	-	Chorismate_synt
SX3_k127_3981940_13	1297865.APJD01000007_gene2136	8.492e-122	398.0	COG0406@1|root,COG0406@2|Bacteria,1NPC4@1224|Proteobacteria,2U9WD@28211|Alphaproteobacteria,3JRMW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Phosphoglycerate mutase family	gpmB	-	5.4.2.12	ko:K15634	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000	-	-	-	His_Phos_1
SX3_k127_3981940_14	1230476.C207_02957	1.16e-91	304.0	COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2TU76@28211|Alphaproteobacteria,3JTYJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	MA20_07455	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_3981940_8	1297865.APJD01000007_gene2134	1.73e-166	524.0	COG5662@1|root,COG5662@2|Bacteria,1RK1X@1224|Proteobacteria,2U8SM@28211|Alphaproteobacteria,3JTT0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	transmembrane transcriptional regulator (Anti-sigma factor)	MA20_07450	-	-	-	-	-	-	-	-	-	-	-	zf-HC2
SX3_k127_3981940_5	1297865.APJD01000007_gene2133	3.414e-205	638.0	COG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,2TR01@28211|Alphaproteobacteria,3JQPS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	DnaJ C terminal domain	dnaJ2	-	-	-	-	-	-	-	-	-	-	-	DnaJ,DnaJ_C
SX3_k127_3981940_15	398525.KB900701_gene3308	1.163e-76	260.0	COG4520@1|root,COG4520@2|Bacteria,1N1T9@1224|Proteobacteria,2UCN2@28211|Alphaproteobacteria,3JYD9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	17 kDa outer membrane surface antigen	MA20_07440	-	-	-	-	-	-	-	-	-	-	-	17kDa_Anti_2
SX3_k127_3981940_10	1297865.APJD01000007_gene2131	1.918e-146	464.0	COG0259@1|root,COG0259@2|Bacteria,1NZUU@1224|Proteobacteria,2TT1U@28211|Alphaproteobacteria,3JS9R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP)	pdxH	GO:0003674,GO:0003824,GO:0004733,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617	1.4.3.5	ko:K00275	ko00750,ko01100,ko01120,map00750,map01100,map01120	M00124	R00277,R00278,R01710,R01711	RC00048,RC00116	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_phzG_C,Putative_PNPOx
SX3_k127_3981940_9	1297865.APJD01000007_gene2130	1.722e-160	507.0	COG1028@1|root,COG1028@2|Bacteria,1MVT2@1224|Proteobacteria,2TQKU@28211|Alphaproteobacteria,3JS01@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	fixR	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_3981940_17	1230476.C207_02963	1.708e-39	147.0	2BSC4@1|root,32MDZ@2|Bacteria,1N1A0@1224|Proteobacteria,2UCPW@28211|Alphaproteobacteria,3K0R8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_3981940_4	1297865.APJD01000007_gene2129	1.222e-206	644.0	COG0598@1|root,COG0598@2|Bacteria,1MWMP@1224|Proteobacteria,2TQQD@28211|Alphaproteobacteria,3JTS3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	CorA-like Mg2+ transporter protein	corA	-	-	ko:K03284	-	-	-	-	ko00000,ko02000	1.A.35.1,1.A.35.3	-	-	CorA
SX3_k127_3981940_11	1230476.C207_02965	2.244e-146	464.0	COG1376@1|root,COG1376@2|Bacteria,1MVYT@1224|Proteobacteria,2U60K@28211|Alphaproteobacteria,3JRF0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	MA20_07410	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_3981940_6	1297865.APJD01000007_gene2127	9.468e-189	595.0	COG3921@1|root,COG3921@2|Bacteria,1PZMM@1224|Proteobacteria,2TR6H@28211|Alphaproteobacteria,3JV1V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Extensin-like protein C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	Extensin-like_C
SX3_k127_3981940_0	1297865.APJD01000007_gene2126	0.0	1132.0	COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2TR96@28211|Alphaproteobacteria,3JTQ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	alkK	-	6.2.1.44,6.2.1.48	ko:K00666,ko:K02182,ko:K20034	ko00920,map00920	-	R10820	RC00004,RC00014	ko00000,ko00001,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_4008025_7	1297865.APJD01000008_gene5537	5.541e-55	195.0	COG3238@1|root,COG3238@2|Bacteria,1N6ZC@1224|Proteobacteria,2UFXH@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Putative inner membrane exporter, YdcZ	-	-	-	ko:K09936	ko02024,map02024	-	-	-	ko00000,ko00001,ko02000	2.A.7.21	-	-	DMT_YdcZ
SX3_k127_4008025_5	1297865.APJD01000008_gene5538	3.889e-145	467.0	COG2207@1|root,COG2207@2|Bacteria,1QKC9@1224|Proteobacteria,2U0K5@28211|Alphaproteobacteria,3K5XP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,HTH_18
SX3_k127_4008025_1	1297865.APJD01000008_gene5539	0.0	1382.0	COG4774@1|root,COG4774@2|Bacteria,1MVZD@1224|Proteobacteria,2TS4K@28211|Alphaproteobacteria,3JR1J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	siderophore receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_4008025_4	1297865.APJD01000008_gene5540	5.807e-256	790.0	COG0565@1|root,COG2852@1|root,COG0565@2|Bacteria,COG2852@2|Bacteria,1N47Y@1224|Proteobacteria,2TS8J@28211|Alphaproteobacteria,3JSPZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA	trmJ	-	-	ko:K02533	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	DUF559,SpoU_methylase
SX3_k127_4008025_2	1297865.APJD01000008_gene5541	0.0	1124.0	COG1073@1|root,COG1073@2|Bacteria,1Q1YJ@1224|Proteobacteria,2V9IJ@28211|Alphaproteobacteria,3JWID@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
SX3_k127_4008025_3	1297865.APJD01000008_gene5542	1.498e-272	840.0	COG0538@1|root,COG0538@2|Bacteria,1MUIB@1224|Proteobacteria,2TQWD@28211|Alphaproteobacteria,3JTHU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the isocitrate and isopropylmalate dehydrogenases family	icd	-	1.1.1.42	ko:K00031	ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146	M00009,M00010,M00173,M00740	R00267,R00268,R01899	RC00001,RC00084,RC00114,RC00626,RC02801	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Iso_dh
SX3_k127_4008025_6	1297865.APJD01000008_gene5543	2.211e-102	334.0	2DP2V@1|root,330AH@2|Bacteria,1R3EE@1224|Proteobacteria,2U69H@28211|Alphaproteobacteria,3JWEA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3455)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3455
SX3_k127_4008025_0	1297865.APJD01000008_gene5544	0.0	1668.0	COG0013@1|root,COG0013@2|Bacteria,1MU9A@1224|Proteobacteria,2TQV4@28211|Alphaproteobacteria,3JS26@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	alaS	GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.7	ko:K01872	ko00970,map00970	M00359,M00360	R03038	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DHHA1,tRNA-synt_2c,tRNA_SAD
SX3_k127_401005_2	1197906.CAJQ02000056_gene3672	6.998e-98	322.0	COG1525@1|root,COG1525@2|Bacteria,1RBYY@1224|Proteobacteria,2U67Z@28211|Alphaproteobacteria,3JYHY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Staphylococcal nuclease homologue	-	-	-	-	-	-	-	-	-	-	-	-	SNase
SX3_k127_401005_3	1197906.CAJQ02000056_gene3673	2.706e-93	312.0	2FCUV@1|root,344XT@2|Bacteria,1R985@1224|Proteobacteria,2U1QG@28211|Alphaproteobacteria,3JSFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_401005_1	1197906.CAJQ02000056_gene3674	3.312e-100	329.0	2ECJU@1|root,336HY@2|Bacteria,1REDG@1224|Proteobacteria,2U7ZM@28211|Alphaproteobacteria,3JYZ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_401005_4	1197906.CAJQ02000056_gene3675	8.531e-85	284.0	29C4Q@1|root,2ZZ38@2|Bacteria,1MYW6@1224|Proteobacteria,2UB58@28211|Alphaproteobacteria,3JZQS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_401005_0	1197906.CAJQ02000056_gene3676	1.615e-136	441.0	2CEVM@1|root,31NE7@2|Bacteria,1R9K7@1224|Proteobacteria,2U3J6@28211|Alphaproteobacteria,3JVF9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_401005_5	1218076.BAYB01000029_gene4819	1.465e-59	210.0	COG0789@1|root,COG0789@2|Bacteria,1RHT6@1224|Proteobacteria,2VTWM@28216|Betaproteobacteria,1K8B0@119060|Burkholderiaceae	28216|Betaproteobacteria	K	helix_turn_helix, mercury resistance	-	-	-	-	-	-	-	-	-	-	-	-	MerR,MerR-DNA-bind,MerR_1
SX3_k127_401005_6	663932.KB902575_gene893	6.532e-28	114.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria,2JWA4@204441|Rhodospirillales	204441|Rhodospirillales	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	-	-	-	-	-	-	-	-	-	-	Oxidored_FMN
SX3_k127_4048812_15	1230476.C207_01289	8.714e-23	97.0	COG0451@1|root,COG0451@2|Bacteria,1MUGT@1224|Proteobacteria,2TRF6@28211|Alphaproteobacteria,3JTUM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction	fcl	-	1.1.1.271	ko:K02377	ko00051,ko00520,ko01100,map00051,map00520,map01100	-	R05692	RC01014	ko00000,ko00001,ko01000	-	-	-	Epimerase
SX3_k127_4048812_9	113395.AXAI01000011_gene6413	5.83e-113	374.0	COG1215@1|root,COG1215@2|Bacteria,1RFK8@1224|Proteobacteria,2UNDT@28211|Alphaproteobacteria,3K6ME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
SX3_k127_4048812_5	1038859.AXAU01000034_gene156	1.039e-152	487.0	arCOG09486@1|root,2ZC3Y@2|Bacteria,1RD8N@1224|Proteobacteria,2U07K@28211|Alphaproteobacteria,3K3J0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyl transferase family 11	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_11
SX3_k127_4048812_8	113395.AXAI01000011_gene6410	2.137e-114	376.0	COG0451@1|root,COG0451@2|Bacteria,1RBIE@1224|Proteobacteria,2U7JV@28211|Alphaproteobacteria,3JUZ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	GDP-mannose 4,6 dehydratase	-	-	1.1.1.339	ko:K19180	ko00523,ko01130,map00523,map01130	-	R10190	RC00182	ko00000,ko00001,ko01000	-	-	-	Epimerase
SX3_k127_4048812_1	1297865.APJD01000016_gene3413	6.152e-240	741.0	COG0451@1|root,COG0451@2|Bacteria,1MV73@1224|Proteobacteria,2TU81@28211|Alphaproteobacteria,3JV3N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Polysaccharide biosynthesis protein	rfbG	-	4.2.1.45	ko:K01709	ko00520,map00520	-	R02426	RC00402	ko00000,ko00001,ko01000	-	-	-	GDP_Man_Dehyd
SX3_k127_4048812_0	113395.AXAI01000011_gene6408	3.75e-245	762.0	COG1086@1|root,COG1086@2|Bacteria,1MWKY@1224|Proteobacteria,2TU1Y@28211|Alphaproteobacteria,3K35K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	Polysaccharide biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt_2
SX3_k127_4048812_12	404380.Gbem_3725	5.37e-69	245.0	COG0451@1|root,COG0451@2|Bacteria,1QUEV@1224|Proteobacteria,439ZY@68525|delta/epsilon subdivisions,2WWBG@28221|Deltaproteobacteria	28221|Deltaproteobacteria	M	Male sterility protein	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
SX3_k127_4048812_7	1297865.APJD01000016_gene3410	1.974e-130	418.0	COG1208@1|root,COG1208@2|Bacteria,1MUYJ@1224|Proteobacteria,2TV3P@28211|Alphaproteobacteria,3JXDT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	JM	Nucleotidyl transferase	-	-	2.7.7.13	ko:K00966	ko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110	M00114,M00361,M00362	R00885	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
SX3_k127_4048812_2	113395.AXAI01000011_gene6405	4.801e-230	721.0	COG0438@1|root,COG0438@2|Bacteria,1PE79@1224|Proteobacteria,2UPTW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_1
SX3_k127_4048812_3	113395.AXAI01000011_gene6403	5.458e-162	515.0	COG1215@1|root,COG1215@2|Bacteria,1QVAX@1224|Proteobacteria,2TWQU@28211|Alphaproteobacteria,3K6MD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3,Glycos_transf_2
SX3_k127_4048812_6	1297865.APJD01000016_gene3409	3.78e-149	474.0	COG1208@1|root,COG1208@2|Bacteria,1MUYJ@1224|Proteobacteria,2TS7U@28211|Alphaproteobacteria,3JVZG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	JM	Nucleotidyl transferase	rfbF	-	2.7.7.33	ko:K00978	ko00500,ko00520,ko01100,map00500,map00520,map01100	-	R00956	RC00002	ko00000,ko00001,ko01000	-	-	-	NTP_transferase
SX3_k127_4048812_14	1144342.PMI40_03455	4.834e-46	188.0	2DN2W@1|root,32V7Q@2|Bacteria,1RKHD@1224|Proteobacteria	1224|Proteobacteria	S	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
SX3_k127_4048812_13	1144342.PMI40_03456	2.005e-46	189.0	COG2518@1|root,COG2518@2|Bacteria,1N1UG@1224|Proteobacteria	1224|Proteobacteria	O	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4048812_10	1144342.PMI40_03457	3.998e-97	325.0	28K7U@1|root,2Z9VT@2|Bacteria,1RFB2@1224|Proteobacteria,2VWJD@28216|Betaproteobacteria	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
SX3_k127_4048812_4	1144342.PMI40_03458	3.859e-161	520.0	COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,2VHMP@28216|Betaproteobacteria,474HB@75682|Oxalobacteraceae	28216|Betaproteobacteria	GM	ABC-type polysaccharide polyol phosphate transport system, ATPase component	rfbE	-	-	ko:K09691	ko02010,map02010	M00250	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.103	-	-	ABC_tran,Wzt_C
SX3_k127_4048812_11	1297865.APJD01000016_gene3408	3.469e-91	300.0	COG1682@1|root,COG1682@2|Bacteria,1N0X3@1224|Proteobacteria,2U57D@28211|Alphaproteobacteria,3JXWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	ABC-2 type transporter	-	-	-	ko:K09690	ko02010,map02010	M00250	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.103	-	-	ABC2_membrane
SX3_k127_4049710_9	1297865.APJD01000036_gene1468	2.925e-87	288.0	COG0642@1|root,COG0642@2|Bacteria,1MX6R@1224|Proteobacteria,2TS9N@28211|Alphaproteobacteria,3JWKT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c
SX3_k127_4049710_1	1297865.APJD01000036_gene1467	0.0	1255.0	COG1520@1|root,COG2010@1|root,COG1520@2|Bacteria,COG2010@2|Bacteria,1PIDE@1224|Proteobacteria,2TTS3@28211|Alphaproteobacteria,3JVPI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	PQQ-like domain	-	-	1.1.2.6	ko:K05889	-	-	R03136	-	ko00000,ko01000	-	-	-	Cytochrome_CBB3,PQQ,PQQ_2,PQQ_3
SX3_k127_4049710_2	1297865.APJD01000036_gene1466	5.023e-270	831.0	COG0683@1|root,COG0683@2|Bacteria,1MWR8@1224|Proteobacteria,2U207@28211|Alphaproteobacteria,3JXM6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_4049710_6	1297865.APJD01000036_gene1465	8.577e-157	500.0	COG0204@1|root,COG0204@2|Bacteria,1MY51@1224|Proteobacteria,2TT3P@28211|Alphaproteobacteria,3JS46@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Phosphate acyltransferases	plsC	-	2.3.1.51	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R02241,R09381	RC00004,RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Acyltransferase
SX3_k127_4049710_7	1297865.APJD01000036_gene1464	7.572e-151	477.0	COG1434@1|root,COG1434@2|Bacteria,1RHMV@1224|Proteobacteria,2U957@28211|Alphaproteobacteria,3JTVW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DUF218 domain	MA20_20455	-	-	-	-	-	-	-	-	-	-	-	DUF218
SX3_k127_4049710_3	1297865.APJD01000036_gene1463	1.833e-195	612.0	COG2177@1|root,COG2177@2|Bacteria,1MXKQ@1224|Proteobacteria,2TSNT@28211|Alphaproteobacteria,3JUMC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Cell division protein	ftsX	-	-	ko:K09811	ko02010,map02010	M00256	-	-	ko00000,ko00001,ko00002,ko02000,ko03036	3.A.1.140	-	-	-
SX3_k127_4049710_8	648885.KB316283_gene4005	1.023e-99	331.0	COG2884@1|root,COG2884@2|Bacteria,1MVQ4@1224|Proteobacteria,2TS9Y@28211|Alphaproteobacteria,1JRXJ@119045|Methylobacteriaceae	28211|Alphaproteobacteria	D	TIGRFAM cell division ATP-binding protein FtsE	ftsE	-	-	ko:K09812	ko02010,map02010	M00256	-	-	ko00000,ko00001,ko00002,ko02000,ko03036	3.A.1.140	-	-	ABC_tran
SX3_k127_4049710_5	1230476.C207_05128	8.72e-162	512.0	2E521@1|root,32ZVA@2|Bacteria,1N9PP@1224|Proteobacteria,2UG1E@28211|Alphaproteobacteria,3JVB9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	TIGRFAM MJ0042 family finger-like protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF3426,zinc_ribbon_4
SX3_k127_4049710_11	1297865.APJD01000036_gene1460	2.924e-70	238.0	COG0745@1|root,COG0745@2|Bacteria,1MZ8W@1224|Proteobacteria,2U9PK@28211|Alphaproteobacteria,3JZ2V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	MA20_20475	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_4049710_0	1297865.APJD01000036_gene1459	0.0	1683.0	COG0419@1|root,COG0419@2|Bacteria,1MWCT@1224|Proteobacteria,2TS61@28211|Alphaproteobacteria,3K6Q4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Domain of unknown function (DUF4175)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4175
SX3_k127_4049710_10	1230476.C207_05125	2.99e-79	264.0	COG0599@1|root,COG0599@2|Bacteria,1RJU6@1224|Proteobacteria,2U5JQ@28211|Alphaproteobacteria,3JY0N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carboxymuconolactone decarboxylase family	MA20_20490	-	4.1.1.44	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R03470	RC00938	ko00000,ko00001,ko01000	-	-	-	CMD
SX3_k127_4049710_4	1297865.APJD01000036_gene1457	3.193e-184	577.0	COG2084@1|root,COG2084@2|Bacteria,1MWR4@1224|Proteobacteria,2U157@28211|Alphaproteobacteria,3JS3J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	MA20_20495	-	1.1.1.31	ko:K00020	ko00280,ko01100,map00280,map01100	-	R05066	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_4058950_6	1038862.KB893841_gene112	9.147e-47	168.0	COG1381@1|root,COG1381@2|Bacteria,1MVEJ@1224|Proteobacteria,2TTYW@28211|Alphaproteobacteria,3JVK5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Involved in DNA repair and RecF pathway recombination	recO	-	-	ko:K03584	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecO_C,RecO_N
SX3_k127_4058950_5	1297865.APJD01000020_gene21	6.213e-74	258.0	2A7JF@1|root,30WH8@2|Bacteria,1RE2C@1224|Proteobacteria,2UG2A@28211|Alphaproteobacteria,3K1CS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_36600	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4058950_0	1297865.APJD01000020_gene20	4.101e-193	603.0	COG1159@1|root,COG1159@2|Bacteria,1MUKT@1224|Proteobacteria,2TSHM@28211|Alphaproteobacteria,3JUHR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism	era	-	-	ko:K03595	-	-	-	-	ko00000,ko03009,ko03029	-	-	-	KH_2,MMR_HSR1
SX3_k127_4058950_2	1298867.AUES01000004_gene539	7.024e-127	415.0	COG0571@1|root,COG0571@2|Bacteria,1MUQ6@1224|Proteobacteria,2TTIA@28211|Alphaproteobacteria,3JTYS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism	rnc	GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363	3.1.26.3	ko:K03685	ko03008,ko05205,map03008,map05205	-	-	-	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	-	-	-	Ribonucleas_3_3,dsrm
SX3_k127_4058950_1	1297865.APJD01000020_gene18	9.292e-169	533.0	COG0681@1|root,COG0681@2|Bacteria,1MXUF@1224|Proteobacteria,2TR9N@28211|Alphaproteobacteria,3JUV2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Belongs to the peptidase S26 family	lepB	-	3.4.21.89	ko:K03100	ko02024,ko03060,map02024,map03060	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S24,Peptidase_S26
SX3_k127_4058950_4	1297865.APJD01000020_gene17	1.09e-81	274.0	COG0736@1|root,COG0736@2|Bacteria,1MZBF@1224|Proteobacteria,2U77S@28211|Alphaproteobacteria,3JY1K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein	acpS	-	2.7.8.7	ko:K00997	ko00770,map00770	-	R01625	RC00002	ko00000,ko00001,ko01000	-	-	-	ACPS
SX3_k127_4058950_3	1297865.APJD01000020_gene16	1.48e-118	381.0	COG0854@1|root,COG0854@2|Bacteria,1MU9W@1224|Proteobacteria,2TTTF@28211|Alphaproteobacteria,3JSGR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate	pdxJ	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617	2.6.99.2	ko:K03474	ko00750,ko01100,map00750,map01100	M00124	R05838	RC01476	ko00000,ko00001,ko00002,ko01000	-	-	-	PdxJ
SX3_k127_406283_3	1230476.C207_06453	1.105e-29	118.0	COG5009@1|root,COG5009@2|Bacteria,1MU5A@1224|Proteobacteria,2USBB@28211|Alphaproteobacteria,3JV26@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-binding protein OB-like domain	mrcA	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	PCB_OB,Transgly,Transpeptidase
SX3_k127_406283_2	1230476.C207_06454	8.216e-65	227.0	2AA5D@1|root,30ZEC@2|Bacteria,1RKMT@1224|Proteobacteria,2U9ZI@28211|Alphaproteobacteria,3JZQ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_406283_0	1297865.APJD01000014_gene584	0.0	1133.0	COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2TR49@28211|Alphaproteobacteria,3JRE0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Gamma-glutamyltranspeptidase	ggt	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006082,GO:0006508,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0019538,GO:0019752,GO:0030288,GO:0030313,GO:0031975,GO:0034722,GO:0036374,GO:0042597,GO:0043094,GO:0043102,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070011,GO:0071704,GO:0097264,GO:0140096,GO:1901564,GO:1901566,GO:1901576	2.3.2.2,3.4.19.13	ko:K00681	ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100	-	R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935	RC00064,RC00090,RC00096	ko00000,ko00001,ko01000,ko01002	-	-	-	G_glu_transpept
SX3_k127_406283_1	1297865.APJD01000014_gene585	6.269e-209	651.0	COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,2TRNX@28211|Alphaproteobacteria,3JWKN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Amino acid permease	-	-	-	ko:K03294	-	-	-	-	ko00000	2.A.3.2	-	-	AA_permease_2,AA_permease_C
SX3_k127_4086629_5	1297865.APJD01000007_gene2280	5.52e-226	701.0	COG2124@1|root,COG2124@2|Bacteria,1MV8Q@1224|Proteobacteria,2TRWW@28211|Alphaproteobacteria,3JX41@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_4086629_1	1297865.APJD01000007_gene2279	0.0	1133.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TRG4@28211|Alphaproteobacteria,3JWCV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	-	-	1.14.13.160,1.14.13.22	ko:K03379,ko:K21730	ko00930,ko01120,ko01220,map00930,map01120,map01220	-	R02231,R06622	RC00662,RC01550	ko00000,ko00001,ko01000	-	-	-	FMO-like,Pyr_redox_2,Pyr_redox_3
SX3_k127_4086629_0	1297865.APJD01000007_gene2278	0.0	2163.0	COG0439@1|root,COG4799@1|root,COG0439@2|Bacteria,COG4799@2|Bacteria,1MU4H@1224|Proteobacteria,2TWYZ@28211|Alphaproteobacteria,3JUPC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Biotin carboxylase C-terminal domain	MA20_04765	-	-	-	-	-	-	-	-	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,Carboxyl_trans
SX3_k127_4086629_8	1297865.APJD01000007_gene2277	1.343e-173	563.0	COG1173@1|root,COG1173@2|Bacteria,1MW3R@1224|Proteobacteria,2TUCW@28211|Alphaproteobacteria,3K6EA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_4086629_7	1297865.APJD01000007_gene2276	2.982e-188	591.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TRH6@28211|Alphaproteobacteria,3JTA2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_4086629_2	1297865.APJD01000007_gene2275	0.0	1018.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TR1D@28211|Alphaproteobacteria,3JS99@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02033,ko:K02035,ko:K13889	ko02010,ko02024,map02010,map02024	M00239,M00348	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.11	-	-	SBP_bac_5
SX3_k127_4086629_6	1297865.APJD01000007_gene2274	4.838e-210	665.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,3JW8P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Oligopeptide/dipeptide transporter, C-terminal region	-	-	-	ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_4086629_4	1297865.APJD01000007_gene2273	2.821e-231	717.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,3JSG0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_4086629_3	1297865.APJD01000007_gene2272	6.472e-293	899.0	COG1804@1|root,COG1804@2|Bacteria,1NSWZ@1224|Proteobacteria,2U2UE@28211|Alphaproteobacteria,3JWDN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_4113907_4	1297863.APJF01000008_gene639	7.719e-74	254.0	COG0702@1|root,COG0702@2|Bacteria,1MW44@1224|Proteobacteria,2TQPX@28211|Alphaproteobacteria,3JXRQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	NmrA-like family	-	-	-	-	-	-	-	-	-	-	-	-	NAD_binding_10,NmrA
SX3_k127_4113907_7	452662.SJA_C2-05160	3.797e-47	175.0	COG1733@1|root,COG1733@2|Bacteria,1RIZT@1224|Proteobacteria,2U7SS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_4113907_6	876269.ARWA01000001_gene3591	9.104e-65	226.0	COG3253@1|root,COG3253@2|Bacteria,1MVBM@1224|Proteobacteria,2TU49@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Chlorite dismutase	-	-	-	-	-	-	-	-	-	-	-	-	Chlor_dismutase
SX3_k127_4113907_5	1040989.AWZU01000001_gene5809	2.517e-66	239.0	COG0715@1|root,COG0715@2|Bacteria,1MV9S@1224|Proteobacteria,2TTIU@28211|Alphaproteobacteria,3JSZP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Substrate binding domain of ABC-type glycine betaine transport system	-	-	-	ko:K02051,ko:K15553	ko00920,ko02010,map00920,map02010	M00188,M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16,3.A.1.17,3.A.1.17.2	-	-	NMT1,NMT1_2
SX3_k127_4113907_2	420246.GTNG_2606	2.788e-153	493.0	COG2141@1|root,COG2141@2|Bacteria,1TW8W@1239|Firmicutes,4HB95@91061|Bacilli,1WG82@129337|Geobacillus	91061|Bacilli	C	Catalyzes the desulfonation of aliphatic sulfonates	ssuD	-	1.14.14.28,1.14.14.5	ko:K04091,ko:K20938	ko00920,map00920	-	R07210,R10206	RC01779,RC02556	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
SX3_k127_4113907_0	1116369.KB890027_gene4956	0.0	1941.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,43J0N@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	-	2.7.7.7	ko:K02337,ko:K14162	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_4113907_1	1281779.H009_19759	1.144e-265	828.0	COG0389@1|root,COG0389@2|Bacteria,1MU5X@1224|Proteobacteria,2TQVR@28211|Alphaproteobacteria,4B7G3@82115|Rhizobiaceae	28211|Alphaproteobacteria	L	Nucleotidyltransferase DNA polymerase involved in DNA repair	-	-	-	ko:K14161	-	-	-	-	ko00000,ko03400	-	-	-	IMS,IMS_C
SX3_k127_4113907_3	1281779.H009_19764	2.548e-102	334.0	COG4544@1|root,COG4544@2|Bacteria,1MY56@1224|Proteobacteria,2TT91@28211|Alphaproteobacteria,4BA4E@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	SOS response	-	-	-	ko:K14160	-	-	-	-	ko00000,ko03400	-	-	-	-
SX3_k127_413030_0	1297865.APJD01000007_gene2010	7.424e-165	518.0	2BS0Z@1|root,32M1I@2|Bacteria,1R5YE@1224|Proteobacteria,2U3WF@28211|Alphaproteobacteria,3JWIW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_413030_6	1126627.BAWE01000004_gene3163	0.000171	44.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,3JUU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337,ko:K14162	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_413030_4	1230476.C207_00408	6.654e-45	165.0	COG2204@1|root,COG2204@2|Bacteria,1NCIM@1224|Proteobacteria,2UF9Z@28211|Alphaproteobacteria,3K03X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Bacterial regulatory protein, Fis family	MA20_01420	-	-	-	-	-	-	-	-	-	-	-	HTH_8
SX3_k127_413030_1	1297865.APJD01000007_gene2012	1.026e-158	503.0	COG1028@1|root,COG1028@2|Bacteria,1N907@1224|Proteobacteria,2TTPW@28211|Alphaproteobacteria,3JQZX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_01425	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_413030_2	1297865.APJD01000007_gene2013	1.489e-95	316.0	COG2214@1|root,COG2214@2|Bacteria,1QSTG@1224|Proteobacteria,2U39M@28211|Alphaproteobacteria,3JV3X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	DnaJ molecular chaperone homology domain	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_413030_3	1297865.APJD01000007_gene2014	8.204e-48	177.0	2A9AW@1|root,2ZZX8@2|Bacteria,1N20W@1224|Proteobacteria,2UCGM@28211|Alphaproteobacteria,3K07T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_413030_5	1297865.APJD01000007_gene2015	0.0001222	46.0	2E560@1|root,32ZYT@2|Bacteria,1RAE3@1224|Proteobacteria,2U5G6@28211|Alphaproteobacteria,3JY3P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_01460	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4141915_0	420324.KI911977_gene3231	1.986e-295	912.0	COG2801@1|root,COG2801@2|Bacteria,1MXCK@1224|Proteobacteria,2TTWU@28211|Alphaproteobacteria,1JVCP@119045|Methylobacteriaceae	28211|Alphaproteobacteria	L	Mu transposase, C-terminal	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	Mu-transpos_C,rve
SX3_k127_4141915_3	420324.KI911977_gene3230	2.254e-148	478.0	COG0464@1|root,COG0464@2|Bacteria,1QWUW@1224|Proteobacteria,2TX64@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	Bacterial TniB protein	-	-	-	-	-	-	-	-	-	-	-	-	TniB
SX3_k127_4141915_5	420324.KI911977_gene3229	1.937e-109	368.0	2DKIW@1|root,309MK@2|Bacteria,1RF7C@1224|Proteobacteria,2U6ID@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	TniQ	-	-	-	-	-	-	-	-	-	-	-	-	TniQ
SX3_k127_4141915_7	266835.14025931	8.009e-100	327.0	2ARAQ@1|root,31GKN@2|Bacteria,1RK39@1224|Proteobacteria,2UMSC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4141915_6	883078.HMPREF9695_04953	1.764e-105	346.0	COG1386@1|root,COG1386@2|Bacteria,1N0KD@1224|Proteobacteria,2TRI0@28211|Alphaproteobacteria,3JU7M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Segregation and condensation complex subunit ScpB	-	-	-	-	-	-	-	-	-	-	-	-	SMC_ScpB
SX3_k127_4141915_4	883078.HMPREF9695_04952	1.173e-114	377.0	28IP1@1|root,2Z8P4@2|Bacteria,1NUJ9@1224|Proteobacteria,2TV2R@28211|Alphaproteobacteria,3JURD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1403)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1403
SX3_k127_4141915_2	266779.Meso_4548	2.445e-190	602.0	COG0582@1|root,COG0582@2|Bacteria,1MWGG@1224|Proteobacteria,2TRBJ@28211|Alphaproteobacteria,43HPT@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_1,Phage_integrase
SX3_k127_4141915_11	1230476.C207_04633	3.954e-09	59.0	28IIA@1|root,2Z8JD@2|Bacteria,1R3RS@1224|Proteobacteria,2U09X@28211|Alphaproteobacteria,3JXAJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HTH DNA binding domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF1612,HTH_13
SX3_k127_4141915_9	1297865.APJD01000027_gene5790	5.241e-80	268.0	2CIAS@1|root,32S7M@2|Bacteria,1N2VP@1224|Proteobacteria,2UC6K@28211|Alphaproteobacteria,3JY9B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PemK_toxin
SX3_k127_4141915_10	1297865.APJD01000027_gene5791	1.062e-40	152.0	COG2161@1|root,COG2161@2|Bacteria,1NE31@1224|Proteobacteria,2UD13@28211|Alphaproteobacteria,3K07A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Antitoxin component of a toxin-antitoxin (TA) module	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
SX3_k127_4141915_12	323097.Nham_4513	0.0001116	51.0	COG2161@1|root,COG2161@2|Bacteria,1NE31@1224|Proteobacteria,2UD13@28211|Alphaproteobacteria,3K07A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Antitoxin component of a toxin-antitoxin (TA) module	-	-	-	-	-	-	-	-	-	-	-	-	PhdYeFM_antitox
SX3_k127_4141915_1	1197906.CAJQ02000061_gene3797	1.377e-211	665.0	2E2KC@1|root,32XPP@2|Bacteria,1R4ZI@1224|Proteobacteria,2TVMF@28211|Alphaproteobacteria,3JTR1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Evidence 4 Homologs of previously reported genes of	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4141915_8	1429916.X566_00660	2.038e-93	313.0	COG0582@1|root,COG0582@2|Bacteria,1MVQC@1224|Proteobacteria,2TR1A@28211|Alphaproteobacteria,3JXVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Phage integrase family	intA	-	-	-	-	-	-	-	-	-	-	-	Phage_integrase
SX3_k127_4154067_1	1297865.APJD01000003_gene6269	2.274e-140	445.0	2AJHU@1|root,31A4G@2|Bacteria,1NVI4@1224|Proteobacteria,2URBB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4154067_0	1297865.APJD01000003_gene6270	0.0	1020.0	COG1222@1|root,COG2127@1|root,COG1222@2|Bacteria,COG2127@2|Bacteria,1R4U1@1224|Proteobacteria,2TRGA@28211|Alphaproteobacteria,3JQS6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATP-dependent Clp protease adaptor protein ClpS	-	-	-	-	-	-	-	-	-	-	-	-	AAA,ClpS
SX3_k127_415632_3	941449.dsx2_2396	5.696e-158	514.0	2A4DH@1|root,30SZB@2|Bacteria,1PAY3@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_415632_0	1297865.APJD01000001_gene6015	0.0	2556.0	COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,2TS2I@28211|Alphaproteobacteria,3JSVM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen	nrdJ	-	1.17.4.1	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	Ribonuc_red_2_N,Ribonuc_red_lgC
SX3_k127_415632_2	1230476.C207_05274	8.53e-173	546.0	COG0697@1|root,COG0697@2|Bacteria,1NEYM@1224|Proteobacteria,2TX6U@28211|Alphaproteobacteria,3JRXZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_29065	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_415632_1	1297865.APJD01000001_gene6013	0.0	1055.0	COG0784@1|root,COG4191@1|root,COG5278@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,COG5278@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JUCI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	CHASE3 domain	-	-	-	-	-	-	-	-	-	-	-	-	CHASE3,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_8,Response_reg
SX3_k127_4159497_12	1297865.APJD01000015_gene3468	1.577e-100	327.0	COG2010@1|root,COG2010@2|Bacteria,1MVYK@1224|Proteobacteria,2U18V@28211|Alphaproteobacteria,3JRFQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4159497_2	1297865.APJD01000015_gene3467	2.5e-323	991.0	COG1027@1|root,COG1027@2|Bacteria,1R9JY@1224|Proteobacteria,2TVZD@28211|Alphaproteobacteria,3JSBM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Fumarase C C-terminus	aspA	-	4.3.1.1	ko:K01744	ko00250,ko01100,map00250,map01100	-	R00490	RC00316,RC02799	ko00000,ko00001,ko01000	-	-	-	FumaraseC_C,Lyase_1
SX3_k127_4159497_7	1297865.APJD01000015_gene3466	1.098e-158	502.0	28Q4W@1|root,2ZCMZ@2|Bacteria,1MX8J@1224|Proteobacteria,2U0AB@28211|Alphaproteobacteria,3JTV5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4159497_8	1230476.C207_05878	1.918e-152	484.0	COG0457@1|root,COG0457@2|Bacteria,1R8QI@1224|Proteobacteria,2U3CP@28211|Alphaproteobacteria,3JUFE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_19
SX3_k127_4159497_5	1297865.APJD01000015_gene3464	8.756e-260	804.0	2CIPC@1|root,2Z9HB@2|Bacteria,1R3W8@1224|Proteobacteria,2TST7@28211|Alphaproteobacteria,3JQZF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyltransferase family 87	-	-	-	-	-	-	-	-	-	-	-	-	GT87
SX3_k127_4159497_1	1297865.APJD01000015_gene3463	0.0	1041.0	28ID8@1|root,2Z8FH@2|Bacteria,1R422@1224|Proteobacteria,2U4SY@28211|Alphaproteobacteria,3JXR3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4159497_9	1297865.APJD01000015_gene3462	2.88e-144	470.0	COG4221@1|root,COG4221@2|Bacteria,1QW6U@1224|Proteobacteria,2TWQA@28211|Alphaproteobacteria,3K6M0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_4159497_3	1297865.APJD01000015_gene3461	5.191e-292	903.0	COG0277@1|root,COG0277@2|Bacteria,1MV1Q@1224|Proteobacteria,2TSVE@28211|Alphaproteobacteria,3JR74@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD binding domain	-	-	1.1.3.8,1.1.98.3	ko:K00103,ko:K16653	ko00053,ko01100,map00053,map01100	M00129	R00647,R03184,R10053	RC00195,RC00346,RC00869	ko00000,ko00001,ko00002,ko01000	-	-	-	ALO,FAD_binding_4
SX3_k127_4159497_4	1297865.APJD01000015_gene3460	3.499e-270	837.0	COG0382@1|root,COG0560@1|root,COG0382@2|Bacteria,COG0560@2|Bacteria,1MXCM@1224|Proteobacteria,2TS0Z@28211|Alphaproteobacteria,3JUH6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	UbiA prenyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	HAD,UbiA
SX3_k127_4159497_14	1297865.APJD01000015_gene3459	1.273e-83	282.0	COG3210@1|root,COG3210@2|Bacteria,1N7NF@1224|Proteobacteria,2UIZ1@28211|Alphaproteobacteria,3K1VF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	VPEP
SX3_k127_4159497_0	1297865.APJD01000015_gene3458	0.0	1061.0	COG2072@1|root,COG2072@2|Bacteria,1MU71@1224|Proteobacteria,2TV2E@28211|Alphaproteobacteria,3JQVH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_07830	-	-	-	-	-	-	-	-	-	-	-	FMO-like,NAD_binding_8
SX3_k127_4159497_10	1297865.APJD01000015_gene3457	1.072e-128	413.0	COG1309@1|root,COG1309@2|Bacteria,1MZE6@1224|Proteobacteria,2U412@28211|Alphaproteobacteria,3JXNZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_4159497_11	1297865.APJD01000015_gene3456	1.855e-128	412.0	2A6DA@1|root,30V66@2|Bacteria,1R7KZ@1224|Proteobacteria,2TWKR@28211|Alphaproteobacteria,3JWWJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4159497_13	1297865.APJD01000015_gene3455	1.123e-93	319.0	COG2340@1|root,COG2340@2|Bacteria,1MXPQ@1224|Proteobacteria,2V4H6@28211|Alphaproteobacteria,3JWQG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cysteine-rich secretory protein family	MA20_41405	-	-	-	-	-	-	-	-	-	-	-	CAP
SX3_k127_4159497_6	1297865.APJD01000015_gene3454	9.616e-193	602.0	COG1893@1|root,COG1893@2|Bacteria,1N0M5@1224|Proteobacteria,2TTAN@28211|Alphaproteobacteria,3JQZK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid	-	-	1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000	-	-	-	ApbA,ApbA_C
SX3_k127_417160_5	1297865.APJD01000009_gene2804	4.716e-168	527.0	COG0682@1|root,COG0682@2|Bacteria,1MVE3@1224|Proteobacteria,2TTNS@28211|Alphaproteobacteria,3JQZ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	lgt	-	-	ko:K13292	-	-	-	-	ko00000,ko01000	-	-	-	LGT
SX3_k127_417160_1	1297865.APJD01000009_gene2805	2.125e-246	761.0	COG1565@1|root,COG1565@2|Bacteria,1N3CJ@1224|Proteobacteria,2TRHW@28211|Alphaproteobacteria,3JRRQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative S-adenosyl-L-methionine-dependent methyltransferase	MA20_05390	-	2.1.1.79	ko:K00574,ko:K18164	ko04714,map04714	-	-	-	ko00000,ko00001,ko01000,ko03029	-	-	-	Methyltransf_28
SX3_k127_417160_7	1297865.APJD01000009_gene2806	5.86e-165	519.0	COG1496@1|root,COG1496@2|Bacteria,1MW2H@1224|Proteobacteria,2TTXU@28211|Alphaproteobacteria,3JQYQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the multicopper oxidase YfiH RL5 family	yfiH	-	-	ko:K05810	-	-	-	-	ko00000,ko01000	-	-	-	Cu-oxidase_4
SX3_k127_417160_3	1297865.APJD01000009_gene2807	1.611e-200	625.0	COG0789@1|root,COG0789@2|Bacteria,1PEAF@1224|Proteobacteria,2TT54@28211|Alphaproteobacteria,3JWJA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, mercury resistance	-	-	-	-	-	-	-	-	-	-	-	-	MerR_1
SX3_k127_417160_9	1297865.APJD01000009_gene2808	6.075e-112	363.0	2E5ZA@1|root,330NT@2|Bacteria,1NDA4@1224|Proteobacteria,2TUTP@28211|Alphaproteobacteria,3JWAB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_05405	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_417160_17	224911.27348412	0.0002675	53.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_417160_4	1297865.APJD01000009_gene2809	2.951e-200	625.0	COG0462@1|root,COG0462@2|Bacteria,1MW21@1224|Proteobacteria,2TR4Y@28211|Alphaproteobacteria,3JSEU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)	prs	-	2.7.6.1	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	M00005	R01049	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Pribosyl_synth,Pribosyltran,Pribosyltran_N
SX3_k127_417160_6	1297865.APJD01000009_gene2810	1.304e-165	524.0	COG1028@1|root,COG1028@2|Bacteria,1MX6D@1224|Proteobacteria,2TV8J@28211|Alphaproteobacteria,3JWDK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_417160_10	1230476.C207_03543	1.167e-110	359.0	COG0054@1|root,COG0054@2|Bacteria,1RHCZ@1224|Proteobacteria,2U5EC@28211|Alphaproteobacteria,3JVZT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin	ribH2	GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.78	ko:K00794	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R04457	RC00960	ko00000,ko00001,ko00002,ko01000	-	-	-	DMRL_synthase
SX3_k127_417160_16	1037409.BJ6T_18370	3.175e-05	51.0	COG5465@1|root,COG5465@2|Bacteria,1REC1@1224|Proteobacteria,2U7UP@28211|Alphaproteobacteria,3JTTV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative bacterial sensory transduction regulator	MA20_05485	-	-	-	-	-	-	-	-	-	-	-	YbjN
SX3_k127_417160_12	1297865.APJD01000009_gene2812	9.173e-104	343.0	COG5465@1|root,COG5465@2|Bacteria,1REC1@1224|Proteobacteria,2U7UP@28211|Alphaproteobacteria,3JTTV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative bacterial sensory transduction regulator	MA20_05485	-	-	-	-	-	-	-	-	-	-	-	YbjN
SX3_k127_417160_8	1297865.APJD01000009_gene2813	5.589e-161	510.0	COG0345@1|root,COG0345@2|Bacteria,1R5J1@1224|Proteobacteria,2TTY7@28211|Alphaproteobacteria,3JR3K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	proC	GO:0003674,GO:0003824,GO:0004735,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.5.1.2	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	M00015	R01248,R01251,R03291,R03293	RC00054,RC00083	ko00000,ko00001,ko00002,ko01000	-	-	-	F420_oxidored,P5CR_dimer
SX3_k127_417160_13	1297865.APJD01000009_gene2814	7.292e-78	262.0	COG5496@1|root,COG5496@2|Bacteria,1RKFT@1224|Proteobacteria,2U5DE@28211|Alphaproteobacteria,3JY0F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thioesterase	MA20_05495	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_417160_14	1297865.APJD01000009_gene2815	1.353e-54	194.0	COG1942@1|root,COG1942@2|Bacteria,1MZXR@1224|Proteobacteria,2UG0Q@28211|Alphaproteobacteria,3K18H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tautomerase enzyme	MA20_05500	-	5.3.2.6	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	M00569	R03966,R05389	RC01040,RC01355	ko00000,ko00001,ko00002,ko01000	-	-	-	Tautomerase
SX3_k127_417160_0	1297865.APJD01000009_gene2816	0.0	1000.0	COG0124@1|root,COG0124@2|Bacteria,1MV2K@1224|Proteobacteria,2TSTH@28211|Alphaproteobacteria,3JSAY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	histidyl-tRNA aminoacylation	hisS	-	6.1.1.21	ko:K01892	ko00970,map00970	M00359,M00360	R03655	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_His
SX3_k127_417160_2	1297865.APJD01000009_gene2817	6.97e-238	737.0	COG0115@1|root,COG0115@2|Bacteria,1MVB0@1224|Proteobacteria,2TR1H@28211|Alphaproteobacteria,3JSXM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid aminotransferase	ilvE	-	2.6.1.42	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00036,M00119,M00570	R01090,R01214,R02199,R10991	RC00006,RC00036	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_4
SX3_k127_417160_11	1297865.APJD01000009_gene2818	5.842e-109	354.0	COG1846@1|root,COG1846@2|Bacteria,1RIX7@1224|Proteobacteria,2U94M@28211|Alphaproteobacteria,3JVPT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	petP	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_4183509_3	1297865.APJD01000006_gene4529	4.04e-98	321.0	COG2207@1|root,COG2207@2|Bacteria,1P4M5@1224|Proteobacteria,2U37A@28211|Alphaproteobacteria,3JWQY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
SX3_k127_4183509_2	1297865.APJD01000006_gene4530	3.194e-149	475.0	COG4731@1|root,COG4731@2|Bacteria,1MY67@1224|Proteobacteria,2TZZE@28211|Alphaproteobacteria,3JWVG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2147)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2147
SX3_k127_4183509_1	1297865.APJD01000006_gene4531	7.167e-165	519.0	COG4731@1|root,COG4731@2|Bacteria,1NBSV@1224|Proteobacteria,2TV31@28211|Alphaproteobacteria,3JX82@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2147)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2147
SX3_k127_4183509_4	1297865.APJD01000006_gene4532	2.05e-81	271.0	2C5RS@1|root,2ZYFA@2|Bacteria,1RJZM@1224|Proteobacteria,2UAYW@28211|Alphaproteobacteria,3JZVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4183509_5	172088.AUGA01000004_gene3982	9.546e-09	57.0	2AHG3@1|root,317TD@2|Bacteria,1NKP5@1224|Proteobacteria,2UKZG@28211|Alphaproteobacteria,3K220@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4183509_0	1297865.APJD01000006_gene4534	0.0	2133.0	COG4625@1|root,COG4625@2|Bacteria,1MU92@1224|Proteobacteria,2TSB7@28211|Alphaproteobacteria,3JUBZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,PATR
SX3_k127_4188276_3	1297865.APJD01000011_gene6632	1.19e-163	515.0	COG2378@1|root,COG2378@2|Bacteria,1PXCX@1224|Proteobacteria,2TTKZ@28211|Alphaproteobacteria,3JUFX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WYL domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_11,WYL
SX3_k127_4188276_5	1297865.APJD01000011_gene6631	1.555e-87	289.0	2A6VQ@1|root,30VQA@2|Bacteria,1RB0J@1224|Proteobacteria,2U657@28211|Alphaproteobacteria,3JYIH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4188276_4	1297865.APJD01000011_gene6630	1.282e-150	478.0	COG0778@1|root,COG0778@2|Bacteria,1PG8V@1224|Proteobacteria,2U59W@28211|Alphaproteobacteria,3JRNI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase family	MA20_06710	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
SX3_k127_4188276_1	1297865.APJD01000011_gene6629	3.905e-277	860.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TTRD@28211|Alphaproteobacteria,3JQZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_06715	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_4188276_0	1297865.APJD01000011_gene6628	6.541e-281	863.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TTRD@28211|Alphaproteobacteria,3JQZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_06720	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_4188276_2	1297865.APJD01000011_gene6627	2.482e-241	747.0	COG1960@1|root,COG1960@2|Bacteria,1N05C@1224|Proteobacteria,2TT9T@28211|Alphaproteobacteria,3JTG7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_06725	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_N
SX3_k127_4190869_18	1230476.C207_06143	6.7e-34	130.0	COG2124@1|root,COG2124@2|Bacteria,1MV8Q@1224|Proteobacteria,2TRWW@28211|Alphaproteobacteria,3JX41@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_4190869_19	743836.AYNA01000035_gene705	7.774e-05	45.0	COG0270@1|root,COG0270@2|Bacteria,1MV9H@1224|Proteobacteria,2TTZG@28211|Alphaproteobacteria,36XGS@31993|Methylocystaceae	28211|Alphaproteobacteria	L	C-5 cytosine-specific DNA methylase	-	-	2.1.1.37	ko:K00558	ko00270,ko01100,ko05206,map00270,map01100,map05206	M00035	R04858	RC00003,RC00332	ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_methylase
SX3_k127_4190869_2	1297865.APJD01000007_gene2281	0.0	1148.0	COG2303@1|root,COG2303@2|Bacteria,1MU3F@1224|Proteobacteria,2TT3C@28211|Alphaproteobacteria,3JRJV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	MA20_17575	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N,NAD_binding_8
SX3_k127_4190869_16	1297865.APJD01000007_gene2282	7.903e-90	297.0	2ERSV@1|root,33JC2@2|Bacteria,1REGE@1224|Proteobacteria,2U5F2@28211|Alphaproteobacteria,3JY5G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4190869_13	419610.Mext_1865	9.585e-136	450.0	COG2131@1|root,COG2131@2|Bacteria,1PMV0@1224|Proteobacteria,2U2JZ@28211|Alphaproteobacteria,1JXDM@119045|Methylobacteriaceae	28211|Alphaproteobacteria	F	PFAM CMP dCMP deaminase zinc-binding	-	-	-	-	-	-	-	-	-	-	-	-	dCMP_cyt_deam_1
SX3_k127_4190869_8	1230476.C207_06146	1.31e-197	618.0	COG0265@1|root,COG0265@2|Bacteria,1N58P@1224|Proteobacteria,2TTTZ@28211|Alphaproteobacteria,3JTX9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Trypsin	MA20_17565	-	-	-	-	-	-	-	-	-	-	-	PDZ_2,Trypsin_2
SX3_k127_4190869_7	1297865.APJD01000007_gene2284	4.225e-220	684.0	COG1835@1|root,COG1835@2|Bacteria,1RICE@1224|Proteobacteria,2U9YK@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	PFAM acyltransferase 3	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_4190869_11	1297865.APJD01000007_gene2285	1.008e-160	510.0	COG2267@1|root,COG2267@2|Bacteria,1Q6AF@1224|Proteobacteria,2U163@28211|Alphaproteobacteria,3JSQF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	MA20_21410	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_4,Abhydrolase_6
SX3_k127_4190869_5	1297865.APJD01000007_gene2286	2.715e-280	862.0	COG2873@1|root,COG2873@2|Bacteria,1NQME@1224|Proteobacteria,2TQW9@28211|Alphaproteobacteria,3JQPZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	DegT/DnrJ/EryC1/StrS aminotransferase family	MA20_21405	-	2.5.1.49	ko:K01740	ko00270,ko01100,map00270,map01100	-	R01287,R04859	RC00020,RC02821,RC02848	ko00000,ko00001,ko01000	-	-	-	Cys_Met_Meta_PP
SX3_k127_4190869_4	1297865.APJD01000007_gene2287	6.158e-301	923.0	COG1488@1|root,COG1488@2|Bacteria,1MV8U@1224|Proteobacteria,2TREY@28211|Alphaproteobacteria,3JSUW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP	pncB	-	6.3.4.21	ko:K00763	ko00760,ko01100,map00760,map01100	-	R01724	RC00033	ko00000,ko00001,ko01000	-	-	-	NAPRTase
SX3_k127_4190869_0	1297865.APJD01000007_gene2288	0.0	2369.0	COG1529@1|root,COG2010@1|root,COG1529@2|Bacteria,COG2010@2|Bacteria,1MV6D@1224|Proteobacteria,2TVYT@28211|Alphaproteobacteria,3K6MK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	MA20_26525	-	1.17.2.1	ko:K18030	ko00760,ko01120,map00760,map01120	M00622	R09473	RC00589	ko00000,ko00001,ko00002,ko01000	-	-	-	Ald_Xan_dh_C2,Cytochrom_C,Cytochrome_CBB3
SX3_k127_4190869_15	1297865.APJD01000007_gene2289	1.247e-98	324.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U7NJ@28211|Alphaproteobacteria,3JTBW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	MA20_26530	-	1.17.2.1,1.3.99.16	ko:K07302,ko:K18029	ko00760,ko01120,map00760,map01120	M00622	R09473	RC00589	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2,Fer2_2
SX3_k127_4190869_3	1297865.APJD01000007_gene2290	1.2e-322	987.0	COG2816@1|root,COG2816@2|Bacteria,1MV1F@1224|Proteobacteria,2TTRT@28211|Alphaproteobacteria,3JSNJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	COG1180 Pyruvate-formate lyase-activating enzyme	MA20_26535	-	1.3.7.1	ko:K20449	ko00760,ko01120,map00760,map01120	-	R03164	RC02422	ko00000,ko00001,ko01000	-	-	-	-
SX3_k127_4190869_9	1297865.APJD01000007_gene2291	1.84e-187	592.0	COG2122@1|root,COG2122@2|Bacteria,1MV9Z@1224|Proteobacteria,2TTG1@28211|Alphaproteobacteria,3JS17@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein	-	-	-	ko:K09740	-	-	-	-	ko00000	-	-	-	ApbE
SX3_k127_4190869_14	1297865.APJD01000007_gene2292	2.194e-118	381.0	28I63@1|root,2Z897@2|Bacteria,1N3VY@1224|Proteobacteria,2TTW0@28211|Alphaproteobacteria,3JQZA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amino acid synthesis	MA20_26545	-	-	-	-	-	-	-	-	-	-	-	AA_synth
SX3_k127_4190869_6	1297865.APJD01000007_gene2293	4.761e-255	788.0	COG0683@1|root,COG0683@2|Bacteria,1MWNB@1224|Proteobacteria,2TTAH@28211|Alphaproteobacteria,3JRRZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_26550	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_4190869_1	1297865.APJD01000007_gene2294	0.0	1197.0	COG0559@1|root,COG4177@1|root,COG0559@2|Bacteria,COG4177@2|Bacteria,1MY1E@1224|Proteobacteria,2TTC6@28211|Alphaproteobacteria,3JSJ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_26555	-	-	ko:K01997,ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_4190869_10	1297865.APJD01000007_gene2295	1.462e-164	526.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TR6T@28211|Alphaproteobacteria,3JR59@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	MA20_26560	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_4190869_12	1297865.APJD01000007_gene2296	9.828e-146	471.0	COG0410@1|root,COG0410@2|Bacteria,1MUR3@1224|Proteobacteria,2TSWQ@28211|Alphaproteobacteria,3JTDN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	MA20_26565	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_4190869_17	1230476.C207_06164	1.837e-83	278.0	COG1846@1|root,COG1846@2|Bacteria,1N0MG@1224|Proteobacteria,2UDDI@28211|Alphaproteobacteria,3JYI4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	MA20_26570	-	-	ko:K22296	-	-	-	-	ko00000,ko03000	-	-	-	MarR,MarR_2
SX3_k127_4200557_10	1297865.APJD01000039_gene1708	1.541e-31	123.0	COG1879@1|root,COG1879@2|Bacteria,1NRXG@1224|Proteobacteria,2TT8F@28211|Alphaproteobacteria,3JU5A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding proteins and sugar binding domain of LacI family	MA20_14250	-	-	ko:K10439	ko02010,ko02030,map02010,map02030	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	Peripla_BP_4
SX3_k127_4200557_6	1297865.APJD01000039_gene1709	4.956e-134	428.0	COG1309@1|root,COG1309@2|Bacteria,1N5IN@1224|Proteobacteria,2VEVX@28211|Alphaproteobacteria,3K6EZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_4200557_0	1297865.APJD01000039_gene1710	0.0	1519.0	COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2TVX5@28211|Alphaproteobacteria,3K6QH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_4200557_4	1297865.APJD01000039_gene1711	4.903e-191	598.0	COG0491@1|root,COG0491@2|Bacteria,1MUAV@1224|Proteobacteria,2TUVK@28211|Alphaproteobacteria,3JVA5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_4200557_1	1297865.APJD01000039_gene1712	0.0	1222.0	COG0326@1|root,COG0326@2|Bacteria,1MUUE@1224|Proteobacteria,2TQRS@28211|Alphaproteobacteria,3JRH3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Molecular chaperone. Has ATPase activity	htpG	-	-	ko:K04079	ko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418	-	-	-	ko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147	-	-	-	HATPase_c,HATPase_c_3,HSP90
SX3_k127_4200557_5	1297865.APJD01000039_gene1713	9.007e-149	470.0	COG5634@1|root,COG5634@2|Bacteria,1R2IV@1224|Proteobacteria,2VGYT@28211|Alphaproteobacteria,3K6C1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized conserved protein (DUF2278)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2278
SX3_k127_4200557_2	1297865.APJD01000039_gene1714	1.018e-271	837.0	COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TS4B@28211|Alphaproteobacteria,3JUWE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobalamin synthesis protein cobW C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	CobW_C,cobW
SX3_k127_4200557_3	1297865.APJD01000039_gene1715	9.302e-242	748.0	2C8CV@1|root,2Z8NV@2|Bacteria,1MWPM@1224|Proteobacteria,2TU5G@28211|Alphaproteobacteria,3JRU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3095)	MA20_06625	-	-	-	-	-	-	-	-	-	-	-	DUF3095
SX3_k127_4200557_8	316055.RPE_0458	7.869e-66	231.0	COG2227@1|root,COG2227@2|Bacteria,1QUDH@1224|Proteobacteria	1224|Proteobacteria	H	Thiopurine S-methyltransferase (TPMT)	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4200557_7	1297865.APJD01000039_gene1717	6.969e-91	301.0	COG4731@1|root,COG4731@2|Bacteria,1N7E7@1224|Proteobacteria,2UHSI@28211|Alphaproteobacteria,3JY51@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2147)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2147
SX3_k127_4200557_9	1297865.APJD01000039_gene1718	1.665e-53	188.0	COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,2TSMQ@28211|Alphaproteobacteria,3JQPE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MatE	MA20_06615	-	-	-	-	-	-	-	-	-	-	-	MatE
SX3_k127_421859_0	1297865.APJD01000006_gene4552	3.66e-288	887.0	COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,2TS4Z@28211|Alphaproteobacteria,3JVP5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MatE	-	-	-	-	-	-	-	-	-	-	-	-	MatE
SX3_k127_421859_2	1297865.APJD01000006_gene4553	4.049e-154	493.0	COG0730@1|root,COG0730@2|Bacteria,1PJR4@1224|Proteobacteria,2TU14@28211|Alphaproteobacteria,3JSQH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfite exporter TauE/SafE	MA20_01715	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_421859_3	1297865.APJD01000006_gene4554	6.481e-140	448.0	COG0596@1|root,COG0596@2|Bacteria,1R3U1@1224|Proteobacteria,2TVFV@28211|Alphaproteobacteria,3JQPU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	MA20_01735	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_421859_4	1297865.APJD01000006_gene4555	2.188e-96	323.0	2CHJ3@1|root,332B4@2|Bacteria,1NC0E@1224|Proteobacteria,2UGT4@28211|Alphaproteobacteria,3JXF1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_421859_7	1230476.C207_03450	3.239e-25	107.0	COG1219@1|root,COG1219@2|Bacteria,1PAWA@1224|Proteobacteria,2UYXN@28211|Alphaproteobacteria,3K5KF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_421859_6	1037409.BJ6T_28130	1.255e-32	131.0	28Y26@1|root,2ZJXS@2|Bacteria,1PAKD@1224|Proteobacteria,2UYIU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_421859_5	1297865.APJD01000006_gene4556	2.381e-85	282.0	COG3795@1|root,COG3795@2|Bacteria,1N32U@1224|Proteobacteria,2UFVV@28211|Alphaproteobacteria,3JYW1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
SX3_k127_421859_1	1297865.APJD01000006_gene4557	2.619e-258	798.0	COG4941@1|root,COG4941@2|Bacteria,1MU3D@1224|Proteobacteria,2TSNH@28211|Alphaproteobacteria,3JTNF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Sigma-70 region 2	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_4227241_1	1297865.APJD01000036_gene1512	0.0	2153.0	COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1MU7B@1224|Proteobacteria,2TRHQ@28211|Alphaproteobacteria,3JSNT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glutamate synthase	gltB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.4.1.13,1.4.1.14	ko:K00265	ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230	-	R00093,R00114,R00248	RC00006,RC00010,RC02799	ko00000,ko00001,ko01000	-	-	-	GATase_2,GXGXG,Glu_syn_central,Glu_synthase
SX3_k127_4227241_15	1297865.APJD01000036_gene1513	3.401e-151	481.0	COG3147@1|root,COG3147@2|Bacteria,1MVVA@1224|Proteobacteria,2U3ZH@28211|Alphaproteobacteria,3JWHM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Non-essential cell division protein that could be required for efficient cell constriction	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4227241_23	1297865.APJD01000036_gene1514	8.109e-95	311.0	COG0071@1|root,COG0071@2|Bacteria,1RH2X@1224|Proteobacteria,2U96D@28211|Alphaproteobacteria,3JYEA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the small heat shock protein (HSP20) family	ibpA	-	-	ko:K04080	-	-	-	-	ko00000,ko03110	-	-	-	HSP20
SX3_k127_4227241_5	1297865.APJD01000036_gene1515	2.846e-210	653.0	COG2267@1|root,COG2267@2|Bacteria,1MWDA@1224|Proteobacteria,2TSZ4@28211|Alphaproteobacteria,3JU64@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	pldB	-	3.1.1.5	ko:K01048	ko00564,map00564	-	-	-	ko00000,ko00001,ko01000	-	-	-	Hydrolase_4
SX3_k127_4227241_18	1297865.APJD01000036_gene1516	6.656e-143	453.0	2BSBG@1|root,32MD9@2|Bacteria,1R813@1224|Proteobacteria,2U3H4@28211|Alphaproteobacteria,3JWD4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4227241_2	1297865.APJD01000036_gene1517	0.0	1174.0	COG0457@1|root,COG2114@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,3JUQM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	MA20_06415	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc,TPR_16,TPR_19,TPR_2,TPR_8
SX3_k127_4227241_21	1297865.APJD01000036_gene1518	1.41e-125	403.0	COG1280@1|root,COG1280@2|Bacteria,1MWA1@1224|Proteobacteria,2U0HE@28211|Alphaproteobacteria,3JUPV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	LysE type translocator	MA20_06410	-	-	-	-	-	-	-	-	-	-	-	LysE
SX3_k127_4227241_16	1297865.APJD01000036_gene1519	5.724e-151	479.0	COG0730@1|root,COG0730@2|Bacteria,1MWAN@1224|Proteobacteria,2TS4X@28211|Alphaproteobacteria,3JS3F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	membrane transporter protein	MA20_06400	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_4227241_10	1297865.APJD01000036_gene1520	8.213e-177	556.0	COG0583@1|root,COG0583@2|Bacteria,1N3XX@1224|Proteobacteria,2TS9T@28211|Alphaproteobacteria,3JQPX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	MA20_06395	-	-	ko:K11921	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_4227241_17	1297865.APJD01000036_gene1521	7.775e-147	466.0	COG0625@1|root,COG0625@2|Bacteria,1RA4M@1224|Proteobacteria,2TV0I@28211|Alphaproteobacteria,3JTZ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_4227241_7	1297865.APJD01000036_gene1522	1.397e-203	634.0	COG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria,3JVJ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_4227241_12	1297865.APJD01000036_gene1523	2.448e-169	533.0	COG0483@1|root,COG0483@2|Bacteria,1PPJ0@1224|Proteobacteria,2TQTX@28211|Alphaproteobacteria,3JQMV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Inositol monophosphatase	hisN	-	3.1.3.15,3.1.3.25,3.1.3.93	ko:K01092,ko:K18649	ko00053,ko00340,ko00521,ko00562,ko01100,ko01110,ko01230,ko04070,map00053,map00340,map00521,map00562,map01100,map01110,map01230,map04070	M00026,M00114,M00131	R01185,R01186,R01187,R03013,R07674	RC00017,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
SX3_k127_4227241_6	1230476.C207_04353	3.456e-205	639.0	COG3741@1|root,COG3741@2|Bacteria,1MY4D@1224|Proteobacteria,2TUPZ@28211|Alphaproteobacteria,3JRPP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	N-formylglutamate amidohydrolase	MA20_06380	-	3.5.1.68	ko:K01458	ko00340,ko00630,map00340,map00630	-	R00525	RC00165,RC00323	ko00000,ko00001,ko01000	-	-	-	FGase
SX3_k127_4227241_24	172088.AUGA01000001_gene6241	1.694e-69	237.0	COG0745@1|root,COG0745@2|Bacteria,1QUSA@1224|Proteobacteria,2TW5G@28211|Alphaproteobacteria,3JYPM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	Response regulator receiver	QU41_05915	-	-	ko:K13589	ko02020,ko04112,map02020,map04112	M00512	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg
SX3_k127_4227241_27	189753.AXAS01000008_gene6782	1.872e-06	49.0	COG0582@1|root,COG0582@2|Bacteria,1RB4D@1224|Proteobacteria,2U5HB@28211|Alphaproteobacteria,3K68W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Phage integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_integrase
SX3_k127_4227241_8	1297865.APJD01000036_gene1526	2.919e-185	580.0	COG2207@1|root,COG2207@2|Bacteria,1RJPK@1224|Proteobacteria,2TV79@28211|Alphaproteobacteria,3K6Q1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K07506	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18
SX3_k127_4227241_3	1297865.APJD01000036_gene1527	7.345e-257	794.0	COG1804@1|root,COG1804@2|Bacteria,1MVY1@1224|Proteobacteria,2TVJ9@28211|Alphaproteobacteria,3JQZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_4227241_14	1297865.APJD01000036_gene1528	1.954e-155	491.0	COG1028@1|root,COG1028@2|Bacteria,1MWJQ@1224|Proteobacteria,2U1AK@28211|Alphaproteobacteria,3JTHH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_4227241_19	1297865.APJD01000036_gene1529	9.932e-142	451.0	COG0625@1|root,COG0625@2|Bacteria,1N2Z1@1224|Proteobacteria,2U0AX@28211|Alphaproteobacteria,3JQT5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_N,GST_N_3
SX3_k127_4227241_4	1230476.C207_04349	1.777e-218	682.0	COG0715@1|root,COG0715@2|Bacteria,1MVJA@1224|Proteobacteria,2TTB8@28211|Alphaproteobacteria,3JTPR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1,NMT1_2
SX3_k127_4227241_13	1297865.APJD01000036_gene1531	7.279e-159	511.0	COG0600@1|root,COG0600@2|Bacteria,1MWDJ@1224|Proteobacteria,2TTR3@28211|Alphaproteobacteria,3JR5N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_4227241_11	1297865.APJD01000036_gene1532	2.088e-172	548.0	COG1116@1|root,COG1116@2|Bacteria,1MWZG@1224|Proteobacteria,2TT79@28211|Alphaproteobacteria,3JVU4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ABC transporter	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_4227241_9	1297865.APJD01000036_gene1533	2.531e-177	566.0	COG3665@1|root,COG3665@2|Bacteria,1N2KR@1224|Proteobacteria,2TSBV@28211|Alphaproteobacteria,3JS2Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1989)	-	-	-	ko:K09967	-	-	-	-	ko00000	-	-	-	DUF1989
SX3_k127_4227241_20	1297865.APJD01000036_gene1534	9.113e-135	436.0	COG3665@1|root,COG3665@2|Bacteria,1N9DM@1224|Proteobacteria,2TU1Z@28211|Alphaproteobacteria,3JUFV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1989)	-	-	-	ko:K09967	-	-	-	-	ko00000	-	-	-	DUF1989
SX3_k127_4227241_0	1297865.APJD01000036_gene1535	0.0	2369.0	COG0439@1|root,COG1984@1|root,COG2049@1|root,COG0439@2|Bacteria,COG1984@2|Bacteria,COG2049@2|Bacteria,1MU4H@1224|Proteobacteria,2TRU5@28211|Alphaproteobacteria,3JXDZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EI	Allophanate hydrolase subunit 2	uca	-	6.3.4.6	ko:K01941	ko00220,ko00791,ko01100,map00220,map00791,map01100	-	R00774	RC00378	ko00000,ko00001,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,CT_A_B,CT_C_D
SX3_k127_4227241_22	1297865.APJD01000036_gene1536	3.205e-122	392.0	COG2084@1|root,COG2084@2|Bacteria,1MUGU@1224|Proteobacteria,2TT50@28211|Alphaproteobacteria,3JS6C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	glxR	-	1.1.1.60	ko:K00042	ko00630,ko01100,map00630,map01100	-	R01745,R01747	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_4276_2	1297865.APJD01000005_gene3885	0.0	1109.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TR3P@28211|Alphaproteobacteria,3JQQ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	benzoate-CoA ligase	MA20_38120	-	6.2.1.32	ko:K08295	ko00627,ko01120,map00627,map01120	-	R00982	RC00004,RC00174	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_4276_3	1297865.APJD01000005_gene3886	0.0	1027.0	COG0477@1|root,COG0477@2|Bacteria,1RGPN@1224|Proteobacteria,2TQKW@28211|Alphaproteobacteria,3K6MJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	rmrB	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
SX3_k127_4276_5	1297865.APJD01000005_gene3887	7.338e-239	740.0	COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,2TS39@28211|Alphaproteobacteria,3JS4E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Biotin-lipoyl like	rmrA	-	-	ko:K03543	-	M00701	-	-	ko00000,ko00002,ko02000	8.A.1.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_4276_11	1297865.APJD01000005_gene3888	8.841e-141	450.0	COG1309@1|root,COG1309@2|Bacteria,1R6HR@1224|Proteobacteria,2U4PH@28211|Alphaproteobacteria,3JTHZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	rmrR	-	-	-	-	-	-	-	-	-	-	-	TetR_C_7,TetR_N
SX3_k127_4276_1	1297865.APJD01000005_gene3889	0.0	1121.0	COG3829@1|root,COG4191@1|root,COG3829@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JTQS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9,Response_reg,dCache_1
SX3_k127_4276_8	1297865.APJD01000005_gene3890	7.543e-201	626.0	COG0583@1|root,COG0583@2|Bacteria,1MWVU@1224|Proteobacteria,2TQS4@28211|Alphaproteobacteria,3JUJ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	MA20_07165	-	-	ko:K21703	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_4276_7	1297865.APJD01000005_gene3891	3.817e-212	661.0	COG0158@1|root,COG0158@2|Bacteria,1MW0E@1224|Proteobacteria,2TSKS@28211|Alphaproteobacteria,3JR9F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1	fbp	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0071704,GO:1901135,GO:1901576	3.1.3.11	ko:K03841	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910	M00003,M00165,M00167,M00344	R00762,R04780	RC00017	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	FBPase
SX3_k127_4276_10	398525.KB900701_gene3928	3.459e-185	598.0	COG3954@1|root,COG3954@2|Bacteria,1MWN9@1224|Proteobacteria,2TSV4@28211|Alphaproteobacteria,3JQSP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Phosphoribulokinase / Uridine kinase family	cbbP	-	2.7.1.19	ko:K00855	ko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200	M00165,M00166	R01523	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PRK
SX3_k127_4276_0	1297865.APJD01000005_gene3893	0.0	1361.0	COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,2TQUX@28211|Alphaproteobacteria,3JSRY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate	cbbT	-	2.2.1.1	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	M00004,M00007,M00165,M00167	R01067,R01641,R01830,R06590	RC00032,RC00226,RC00571,RC01560	ko00000,ko00001,ko00002,ko01000	-	-	-	Transket_pyr,Transketolase_C,Transketolase_N
SX3_k127_4276_6	1297865.APJD01000005_gene3894	8.477e-235	726.0	COG0191@1|root,COG0191@2|Bacteria,1MURX@1224|Proteobacteria,2TSAD@28211|Alphaproteobacteria,3JS5T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Function of homologous gene experimentally demonstrated in an other organism	cbbA	-	4.1.2.13	ko:K01624	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00003,M00165,M00167,M00344,M00345	R01068,R01070,R01829,R02568	RC00438,RC00439,RC00603,RC00604	ko00000,ko00001,ko00002,ko01000	-	-	-	F_bP_aldolase
SX3_k127_4276_4	1297865.APJD01000005_gene3895	0.0	1015.0	COG1850@1|root,COG1850@2|Bacteria,1MWEB@1224|Proteobacteria,2TSJV@28211|Alphaproteobacteria,3JU4U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site	cbbL	-	4.1.1.39	ko:K01601	ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200	M00165,M00166,M00532	R00024,R03140	RC00172,RC00859	ko00000,ko00001,ko00002,ko01000	-	-	-	RuBisCO_large,RuBisCO_large_N
SX3_k127_4276_13	1297865.APJD01000005_gene3896	1.514e-93	306.0	COG4451@1|root,COG4451@2|Bacteria,1R9ZE@1224|Proteobacteria,2U7JJ@28211|Alphaproteobacteria,3JY43@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	ribulose bisphosphate carboxylase, small chain	cbbS	-	4.1.1.39	ko:K01602	ko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200	M00165,M00166,M00532	R00024,R03140	RC00172,RC00859	ko00000,ko00001,ko00002,ko01000	-	-	-	RuBisCO_small
SX3_k127_4276_9	1297865.APJD01000005_gene3897	3.057e-199	625.0	COG0464@1|root,COG0464@2|Bacteria,1MUCN@1224|Proteobacteria,2TVFY@28211|Alphaproteobacteria,3JQTS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATPase family associated with various cellular activities (AAA)	cbbX	-	-	-	-	-	-	-	-	-	-	-	AAA
SX3_k127_4276_12	1297865.APJD01000005_gene3898	1.19e-140	462.0	COG0637@1|root,COG0637@2|Bacteria,1PUMZ@1224|Proteobacteria,2U1D1@28211|Alphaproteobacteria,3JRGI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	haloacid dehalogenase-like hydrolase	cbbY	-	-	-	-	-	-	-	-	-	-	-	HAD_2
SX3_k127_4276_14	1297865.APJD01000005_gene3899	1.937e-11	64.0	COG4213@1|root,COG4213@2|Bacteria,1MX63@1224|Proteobacteria,2TQQW@28211|Alphaproteobacteria,3JU57@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding protein domain	chvE	GO:0005575,GO:0005623,GO:0042597,GO:0044464	-	ko:K02058,ko:K10546	ko02010,map02010	M00216,M00221	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2,3.A.1.2.5	-	-	Peripla_BP_4
SX3_k127_429603_5	1297865.APJD01000005_gene3909	1.492e-149	476.0	COG5446@1|root,COG5446@2|Bacteria,1RBWQ@1224|Proteobacteria,2U9NN@28211|Alphaproteobacteria,3JTIZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Probable cobalt transporter subunit (CbtA)	cbtA	-	-	-	-	-	-	-	-	-	-	-	CbtA
SX3_k127_429603_11	1297865.APJD01000005_gene3910	6.002e-32	130.0	2EKSU@1|root,33EGJ@2|Bacteria,1PN53@1224|Proteobacteria,2V0RJ@28211|Alphaproteobacteria,3K12R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Probable cobalt transporter subunit (CbtB)	-	-	-	-	-	-	-	-	-	-	-	-	CbtB
SX3_k127_429603_10	443598.AUFA01000003_gene2217	7.448e-33	135.0	2C55K@1|root,2ZJIM@2|Bacteria,1NF7Q@1224|Proteobacteria,2UF7U@28211|Alphaproteobacteria,3K192@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_429603_6	1297865.APJD01000005_gene3911	4.133e-145	464.0	COG0778@1|root,COG0778@2|Bacteria,1MZN8@1224|Proteobacteria,2TTDR@28211|Alphaproteobacteria,3JTER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase family	bluB	GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016491,GO:0016705,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	1.13.11.79	ko:K04719	ko00740,ko01100,map00740,map01100	-	R09083	RC00435,RC02413	ko00000,ko00001,ko01000	-	-	-	Nitroreductase
SX3_k127_429603_8	1297865.APJD01000005_gene3912	3.03e-101	332.0	COG2087@1|root,COG2087@2|Bacteria,1RH0A@1224|Proteobacteria,2U98X@28211|Alphaproteobacteria,3JQW7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate	cobP	-	2.7.1.156,2.7.7.62	ko:K02231	ko00860,ko01100,map00860,map01100	M00122	R05221,R05222,R06558	RC00002,RC00428	ko00000,ko00001,ko00002,ko01000	-	-	-	CobU
SX3_k127_429603_4	1297865.APJD01000005_gene3913	5e-194	609.0	COG1270@1|root,COG1270@2|Bacteria,1MURM@1224|Proteobacteria,2TRZ8@28211|Alphaproteobacteria,3JSUR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group	cobD	-	6.3.1.10	ko:K02227	ko00860,ko01100,map00860,map01100	M00122	R06529,R07302	RC00090,RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	CobD_Cbib
SX3_k127_429603_2	1297865.APJD01000005_gene3914	9.724e-204	646.0	COG0079@1|root,COG0079@2|Bacteria,1MXDP@1224|Proteobacteria,2TUEC@28211|Alphaproteobacteria,3JUP5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class I and II	cobC	-	-	ko:K02225	ko00860,ko01100,map00860,map01100	M00122	R06529,R07302	RC00090,RC00096	ko00000,ko00001,ko00002	-	-	-	Aminotran_1_2
SX3_k127_429603_0	1297865.APJD01000005_gene3915	1.049e-311	955.0	COG1492@1|root,COG1492@2|Bacteria,1MUFY@1224|Proteobacteria,2TRHI@28211|Alphaproteobacteria,3JSKC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation	cobQ	-	6.3.5.10	ko:K02232	ko00860,ko01100,map00860,map01100	M00122	R05225	RC00010,RC01302	ko00000,ko00001,ko00002,ko01000	-	-	-	AAA_26,CbiA,GATase_3
SX3_k127_429603_7	1297865.APJD01000005_gene3916	4.379e-136	434.0	COG2109@1|root,COG2109@2|Bacteria,1MUN6@1224|Proteobacteria,2TT92@28211|Alphaproteobacteria,3JS5K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids	cobO	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	2.5.1.17	ko:K19221	ko00860,ko01100,map00860,map01100	M00122	R01492,R05220,R07268	RC00533	ko00000,ko00001,ko00002,ko01000	-	-	-	Co_AT_N,CobA_CobO_BtuR
SX3_k127_429603_9	189753.AXAS01000002_gene5278	2.746e-68	236.0	COG5469@1|root,COG5469@2|Bacteria,1N7P8@1224|Proteobacteria,2UGPN@28211|Alphaproteobacteria,3JYZS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1636)	MA20_14540	-	-	-	-	-	-	-	-	-	-	-	DUF1636
SX3_k127_429603_1	1297865.APJD01000005_gene3918	9.481e-217	673.0	COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TQWN@28211|Alphaproteobacteria,3JRFY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	cobalamin synthesis protein	cobW	-	-	ko:K02234	-	-	-	-	ko00000,ko00001	-	-	-	CobW_C,cobW
SX3_k127_429603_3	1297865.APJD01000005_gene3919	2.223e-195	610.0	COG1429@1|root,COG1429@2|Bacteria,1MU5W@1224|Proteobacteria,2TQVD@28211|Alphaproteobacteria,3JUQP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	CobN/Magnesium Chelatase	cobN	-	6.6.1.2	ko:K02230	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	CobN-Mg_chel
SX3_k127_4307387_6	1297865.APJD01000011_gene6732	5.615e-75	251.0	COG1236@1|root,COG1236@2|Bacteria,1MV7U@1224|Proteobacteria,2TQU5@28211|Alphaproteobacteria,3JR3B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Metallo-beta-lactamase superfamily	MA20_22065	-	-	ko:K07577	-	-	-	-	ko00000	-	-	-	Lactamase_B
SX3_k127_4307387_0	1297865.APJD01000011_gene6731	0.0	1294.0	COG1793@1|root,COG1793@2|Bacteria,1MV3S@1224|Proteobacteria,2TRQ9@28211|Alphaproteobacteria,3JRIV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA ligase	lig	-	6.5.1.1,6.5.1.6,6.5.1.7	ko:K10747	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00381,R00382,R10822,R10823	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N
SX3_k127_4307387_8	172088.AUGA01000001_gene6596	6.014e-64	219.0	2CAZC@1|root,32ZW8@2|Bacteria,1N86F@1224|Proteobacteria,2UGV9@28211|Alphaproteobacteria,3JZEQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_22075	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4307387_3	1297865.APJD01000011_gene6729	1.144e-160	507.0	COG1234@1|root,COG1234@2|Bacteria,1Q4PW@1224|Proteobacteria,2TUHQ@28211|Alphaproteobacteria,3JTWA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Beta-lactamase superfamily domain	MA20_22080	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_2
SX3_k127_4307387_1	1297865.APJD01000011_gene6728	5.058e-271	836.0	COG0534@1|root,COG0534@2|Bacteria,1MV6B@1224|Proteobacteria,2TSKZ@28211|Alphaproteobacteria,3JS91@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MatE	dinF	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03327	-	-	-	-	ko00000,ko02000	2.A.66.1	-	-	MatE
SX3_k127_4307387_2	1297865.APJD01000011_gene6727	7.667e-233	723.0	COG0167@1|root,COG0167@2|Bacteria,1MU7C@1224|Proteobacteria,2TRF8@28211|Alphaproteobacteria,3JSD5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor	pyrD	-	1.3.5.2	ko:K00254	ko00240,ko01100,map00240,map01100	M00051	R01868	RC00051	ko00000,ko00001,ko00002,ko01000	-	-	-	DHO_dh
SX3_k127_4307387_7	1297865.APJD01000011_gene6726	2.132e-70	239.0	COG3502@1|root,COG3502@2|Bacteria,1MZEQ@1224|Proteobacteria,2UBR3@28211|Alphaproteobacteria,3JZ4V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF952)	MA20_22095	-	-	-	-	-	-	-	-	-	-	-	DUF952
SX3_k127_4307387_4	1297865.APJD01000011_gene6725	3.778e-134	432.0	COG2932@1|root,COG2932@2|Bacteria,1MXWS@1224|Proteobacteria,2TQJE@28211|Alphaproteobacteria,3JRDH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Peptidase S24-like	c1	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S24
SX3_k127_4307387_5	1297865.APJD01000011_gene6724	3.437e-87	289.0	COG2010@1|root,COG2010@2|Bacteria,1P1D4@1224|Proteobacteria,2UUQF@28211|Alphaproteobacteria,3K4N7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4310516_11	1038859.AXAU01000007_gene5834	5.429e-41	151.0	COG0491@1|root,COG0491@2|Bacteria,1MUT2@1224|Proteobacteria,2TRG9@28211|Alphaproteobacteria,3JU78@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	MA20_39355	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_4310516_6	1297865.APJD01000021_gene3046	1.527e-183	575.0	COG2084@1|root,COG2084@2|Bacteria,1MV48@1224|Proteobacteria,2U0FZ@28211|Alphaproteobacteria,3JW4R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	-	-	1.1.1.31	ko:K00020	ko00280,ko01100,map00280,map01100	-	R05066	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_4310516_7	1230476.C207_03905	1.029e-103	339.0	COG1846@1|root,COG1846@2|Bacteria,1N1CJ@1224|Proteobacteria,2UCHN@28211|Alphaproteobacteria,3JUQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	MA20_39375	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_4310516_0	1297865.APJD01000021_gene3044	0.0	1105.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2TQT8@28211|Alphaproteobacteria,3JSFW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	MA20_39380	-	1.14.13.127	ko:K05712	ko00360,ko01120,ko01220,map00360,map01120,map01220	M00545	R06786,R06787	RC00236	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_4310516_12	1297865.APJD01000021_gene3043	7.878e-37	139.0	2E3JP@1|root,32YI0@2|Bacteria,1N6ZI@1224|Proteobacteria,2UF5U@28211|Alphaproteobacteria,3K0CN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2783)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2783
SX3_k127_4310516_5	1297865.APJD01000021_gene3042	1.175e-208	652.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,2TQUY@28211|Alphaproteobacteria,3JT70@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	MA20_39390	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_4310516_1	1297865.APJD01000021_gene3041	9.731e-316	966.0	COG3508@1|root,COG3508@2|Bacteria,1MV9G@1224|Proteobacteria,2TRFI@28211|Alphaproteobacteria,3JS7Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate	hmgA	-	1.13.11.5	ko:K00451	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R02519	RC00737	ko00000,ko00001,ko00002,ko01000	-	-	-	HgmA
SX3_k127_4310516_2	1297865.APJD01000021_gene3040	4.436e-286	878.0	COG0179@1|root,COG0179@2|Bacteria,1MW82@1224|Proteobacteria,2TRKH@28211|Alphaproteobacteria,3JT4J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetase N-terminal	fahA	-	3.7.1.2	ko:K01555	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R01364	RC00326,RC00446	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	FAA_hydrolase,FAA_hydrolase_N
SX3_k127_4310516_9	1297865.APJD01000021_gene3039	8.385e-69	233.0	COG3813@1|root,COG3813@2|Bacteria,1N712@1224|Proteobacteria,2UFME@28211|Alphaproteobacteria,3JZWV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1272)	MA20_39405	-	-	ko:K09984	-	-	-	-	ko00000	-	-	-	DUF1272
SX3_k127_4310516_8	1297865.APJD01000021_gene3038	2.254e-95	312.0	COG1522@1|root,COG1522@2|Bacteria,1QW36@1224|Proteobacteria,2U0QX@28211|Alphaproteobacteria,3JU60@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	-	-	-	-	-	-	-	-	-	-	-	-	AsnC_trans_reg,HTH_24,HTH_AsnC-type
SX3_k127_4310516_3	1297865.APJD01000021_gene3037	6.99e-250	772.0	COG3185@1|root,COG3185@2|Bacteria,1MUVZ@1224|Proteobacteria,2TRCC@28211|Alphaproteobacteria,3JRTH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal	hppD	GO:0001897,GO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0003868,GO:0006082,GO:0006520,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019752,GO:0019835,GO:0019836,GO:0031640,GO:0035821,GO:0043436,GO:0044003,GO:0044004,GO:0044179,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044364,GO:0044403,GO:0044419,GO:0044764,GO:0046395,GO:0051213,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	1.13.11.27	ko:K00457	ko00130,ko00350,ko00360,ko01100,map00130,map00350,map00360,map01100	M00044	R01372,R02521	RC00505,RC00738	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Glyoxalase,Glyoxalase_5
SX3_k127_4310516_4	1297865.APJD01000021_gene3036	1.724e-244	756.0	COG1804@1|root,COG1804@2|Bacteria,1MW1H@1224|Proteobacteria,2TR7D@28211|Alphaproteobacteria,3JUQ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_39420	-	5.1.99.4	ko:K01796	ko00120,ko01100,ko04146,map00120,map01100,map04146	M00104	R08734,R08739	RC02345	ko00000,ko00001,ko00002,ko01000	-	-	-	CoA_transf_3
SX3_k127_4310516_10	1297865.APJD01000021_gene3035	3.232e-66	226.0	COG1319@1|root,COG1319@2|Bacteria,1MUDB@1224|Proteobacteria,2TRA8@28211|Alphaproteobacteria,3JRWD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CO dehydrogenase flavoprotein C-terminal domain	cutM	-	1.2.5.3	ko:K03519	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
SX3_k127_4316880_0	1297865.APJD01000003_gene6320	7.679e-262	807.0	COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,1MU31@1224|Proteobacteria,2TRJF@28211|Alphaproteobacteria,3JRVT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	polA	GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576	2.7.7.7	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	-	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1
SX3_k127_4316880_7	1230476.C207_04688	0.0001945	46.0	COG0621@1|root,COG0621@2|Bacteria,1MUCS@1224|Proteobacteria,2TRYD@28211|Alphaproteobacteria,3JTP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	MiaB-like tRNA modifying enzyme	mtaB	GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035598,GO:0035600,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050497,GO:0071704,GO:0090304,GO:1901360	2.8.4.5	ko:K18707	-	-	R10649	RC00003,RC03221	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,UPF0004
SX3_k127_4316880_3	1297865.APJD01000003_gene6319	1.669e-121	391.0	COG1280@1|root,COG1280@2|Bacteria,1MWA1@1224|Proteobacteria,2TVFG@28211|Alphaproteobacteria,3JS2P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	LysE type translocator	MA20_22020	-	-	-	-	-	-	-	-	-	-	-	LysE
SX3_k127_4316880_2	1297865.APJD01000003_gene6318	1.63e-135	432.0	COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,2TTVR@28211|Alphaproteobacteria,3JV74@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_22025	-	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_4316880_4	1297865.APJD01000003_gene6317	4.278e-111	365.0	COG0461@1|root,COG0461@2|Bacteria,1MVP7@1224|Proteobacteria,2TTSB@28211|Alphaproteobacteria,3JRPV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)	pyrE	-	2.4.2.10	ko:K00762	ko00240,ko01100,map00240,map01100	M00051	R01870	RC00611	ko00000,ko00001,ko00002,ko01000	-	-	-	Pribosyltran
SX3_k127_4316880_1	1297865.APJD01000003_gene6316	2.273e-164	519.0	2CKRE@1|root,34B8T@2|Bacteria,1MX6I@1224|Proteobacteria,2TSDC@28211|Alphaproteobacteria,3JUEU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2865)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2865
SX3_k127_4316880_5	1297865.APJD01000003_gene6315	1.033e-89	296.0	2A6U3@1|root,30VNB@2|Bacteria,1RAND@1224|Proteobacteria,2U5HZ@28211|Alphaproteobacteria,3JY4G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_22040	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4316880_6	1297865.APJD01000003_gene6314	1.333e-57	201.0	COG2827@1|root,COG2827@2|Bacteria,1MZME@1224|Proteobacteria,2UCNX@28211|Alphaproteobacteria,3K0PV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	GIY-YIG type nucleases (URI domain)	-	-	-	ko:K07461	-	-	-	-	ko00000	-	-	-	GIY-YIG
SX3_k127_4321047_5	1297865.APJD01000019_gene3114	4.807e-133	426.0	COG0325@1|root,COG0325@2|Bacteria,1MWN7@1224|Proteobacteria,2TR5Z@28211|Alphaproteobacteria,3JU8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis	MA20_24865	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363	-	ko:K06997	-	-	-	-	ko00000	-	-	-	Ala_racemase_N
SX3_k127_4321047_2	1297865.APJD01000019_gene3113	0.0	1097.0	COG2199@1|root,COG5000@1|root,COG3706@2|Bacteria,COG5000@2|Bacteria,1P2K6@1224|Proteobacteria,2TRAJ@28211|Alphaproteobacteria,3JQX9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Cache domain	MA20_24860	-	-	-	-	-	-	-	-	-	-	-	GGDEF,HAMP,dCache_1
SX3_k127_4321047_0	1297865.APJD01000019_gene3112	0.0	2002.0	COG0457@1|root,COG0457@2|Bacteria	1297865.APJD01000019_gene3112|-	S	peptidyl-tyrosine sulfation	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4321047_1	1297865.APJD01000019_gene3111	0.0	1814.0	COG0495@1|root,COG0495@2|Bacteria,1MV47@1224|Proteobacteria,2TQPK@28211|Alphaproteobacteria,3JRM8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the class-I aminoacyl-tRNA synthetase family	leuS	GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.4	ko:K01869	ko00970,map00970	M00359,M00360	R03657	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Anticodon_1,tRNA-synt_1,tRNA-synt_1_2
SX3_k127_4321047_6	172088.AUGA01000016_gene2489	1.588e-94	312.0	COG5468@1|root,COG5468@2|Bacteria,1MXDR@1224|Proteobacteria,2TUMW@28211|Alphaproteobacteria,3JTPX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lipopolysaccharide-assembly	-	-	-	ko:K03643	-	-	-	-	ko00000,ko02000	1.B.42.1	-	-	LptE
SX3_k127_4321047_3	1297865.APJD01000019_gene3109	5.154e-213	662.0	COG1466@1|root,COG1466@2|Bacteria,1R8PA@1224|Proteobacteria,2U1KQ@28211|Alphaproteobacteria,3JQWA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase III, delta' subunit	holA	-	2.7.7.7	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta
SX3_k127_4321047_4	1297865.APJD01000019_gene3108	9.849e-181	568.0	COG1475@1|root,COG1475@2|Bacteria,1MW2E@1224|Proteobacteria,2TSTN@28211|Alphaproteobacteria,3JTGY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the ParB family	parB	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
SX3_k127_4321047_7	1297865.APJD01000019_gene3107	1.311e-27	111.0	COG1192@1|root,COG1192@2|Bacteria,1MV43@1224|Proteobacteria,2TSWH@28211|Alphaproteobacteria,3JRXN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Cellulose biosynthesis protein BcsQ	parA	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
SX3_k127_4330286_0	1297865.APJD01000002_gene4184	1.012e-299	918.0	COG0415@1|root,COG0415@2|Bacteria,1MV9Y@1224|Proteobacteria,2TSDP@28211|Alphaproteobacteria,3JSS4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA photolyase	phrB	GO:0000003,GO:0000166,GO:0000719,GO:0001101,GO:0002252,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0003904,GO:0003913,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006325,GO:0006338,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007623,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009314,GO:0009414,GO:0009415,GO:0009416,GO:0009605,GO:0009606,GO:0009607,GO:0009615,GO:0009628,GO:0009637,GO:0009638,GO:0009642,GO:0009645,GO:0009646,GO:0009648,GO:0009719,GO:0009725,GO:0009785,GO:0009791,GO:0009881,GO:0009882,GO:0009888,GO:0009893,GO:0009909,GO:0009911,GO:0009987,GO:0010033,GO:0010035,GO:0010073,GO:0010075,GO:0010118,GO:0010228,GO:0010244,GO:0010617,GO:0014070,GO:0016043,GO:0016604,GO:0016829,GO:0016830,GO:0017076,GO:0019222,GO:0019637,GO:0019725,GO:0022414,GO:0022603,GO:0023052,GO:0030003,GO:0030522,GO:0030554,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0033993,GO:0034641,GO:0035639,GO:0036094,GO:0038023,GO:0040008,GO:0042221,GO:0042592,GO:0042726,GO:0042752,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048037,GO:0048507,GO:0048509,GO:0048511,GO:0048518,GO:0048522,GO:0048571,GO:0048573,GO:0048574,GO:0048580,GO:0048582,GO:0048583,GO:0048608,GO:0048638,GO:0048731,GO:0048831,GO:0048856,GO:0048878,GO:0050660,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051276,GO:0051480,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055086,GO:0060089,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0071949,GO:0072387,GO:0072503,GO:0072507,GO:0090304,GO:0097159,GO:0097367,GO:0098542,GO:0098771,GO:0104004,GO:0140097,GO:1900618,GO:1901265,GO:1901360,GO:1901363,GO:1901371,GO:1901564,GO:1901700,GO:1902347,GO:1905421,GO:2000024,GO:2000026,GO:2000028,GO:2000241,GO:2000243,GO:2000377,GO:2000379	4.1.99.3	ko:K01669	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_photolyase,FAD_binding_7
SX3_k127_4330286_4	1297865.APJD01000002_gene4183	1.585e-184	577.0	COG0697@1|root,COG0697@2|Bacteria,1MXCD@1224|Proteobacteria,2TR27@28211|Alphaproteobacteria,3JRUH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_35690	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_4330286_3	1297865.APJD01000002_gene4182	6.458e-186	583.0	COG0727@1|root,COG0727@2|Bacteria,1RJ0V@1224|Proteobacteria,2U8AG@28211|Alphaproteobacteria,3JT3R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PFAM Uncharacterised protein family (UPF0153)	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4330286_1	1297865.APJD01000002_gene4181	2.86e-237	737.0	COG2807@1|root,COG2807@2|Bacteria,1MXGT@1224|Proteobacteria,2TVC9@28211|Alphaproteobacteria,3K284@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Major Facilitator Superfamily	-	-	-	ko:K03449	-	-	-	-	ko00000,ko02000	2.A.1.17	-	-	MFS_1
SX3_k127_4330286_5	1297865.APJD01000002_gene4180	1.343e-170	546.0	COG2207@1|root,COG2207@2|Bacteria,1NETZ@1224|Proteobacteria,2TU4R@28211|Alphaproteobacteria,3JW06@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	yeaM	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,HTH_18
SX3_k127_4330286_7	1297865.APJD01000002_gene4179	1.183e-95	316.0	2EHAM@1|root,33B2H@2|Bacteria,1RA0X@1224|Proteobacteria,2U5CB@28211|Alphaproteobacteria,3JYA8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_35685	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4330286_8	1297865.APJD01000002_gene4178	7.49e-58	203.0	2C9U1@1|root,302JN@2|Bacteria,1NDE1@1224|Proteobacteria,2UHD6@28211|Alphaproteobacteria,3K0ZD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4330286_11	1449063.JMLS01000006_gene3612	0.0007619	44.0	2BKI8@1|root,32EZF@2|Bacteria,1TZNM@1239|Firmicutes,4I8XU@91061|Bacilli,270PJ@186822|Paenibacillaceae	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4330286_2	1297865.APJD01000002_gene4176	1.824e-202	644.0	COG2207@1|root,COG2207@2|Bacteria,1R6AG@1224|Proteobacteria,2U3JP@28211|Alphaproteobacteria,3JVBG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Arabinose-binding domain of AraC transcription regulator, N-term	-	-	-	-	-	-	-	-	-	-	-	-	Arabinose_bd,HTH_18
SX3_k127_4330286_6	1297865.APJD01000002_gene4175	3.29e-108	352.0	COG3239@1|root,COG3239@2|Bacteria,1MW29@1224|Proteobacteria,2TSHW@28211|Alphaproteobacteria,3JX9Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Fatty acid desaturase	alkB	-	1.14.15.3	ko:K00496	ko00071,ko00930,map00071,map00930	-	R01347,R02281,R06945	RC00478	ko00000,ko00001,ko01000	-	-	-	FA_desaturase
SX3_k127_4334508_22	1207075.PputUW4_04190	2.078e-35	141.0	COG0323@1|root,COG4191@1|root,COG0323@2|Bacteria,COG4191@2|Bacteria,1ND4X@1224|Proteobacteria,1RQA7@1236|Gammaproteobacteria	1236|Gammaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HATPase_c_3
SX3_k127_4334508_23	426117.M446_1488	2.447e-30	132.0	COG3279@1|root,COG3279@2|Bacteria,1Q61I@1224|Proteobacteria,2UQVC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	KT	Response regulator receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_4334508_11	272568.GDI3776	2.908e-135	442.0	COG0270@1|root,COG0270@2|Bacteria,1MV9H@1224|Proteobacteria,2U0FE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	H	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	-	-	2.1.1.37	ko:K00558	ko00270,ko01100,ko05206,map00270,map01100,map05206	M00035	R04858	RC00003,RC00332	ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_methylase,HTH_3
SX3_k127_4334508_16	1297865.APJD01000014_gene960	1.492e-85	284.0	COG3836@1|root,COG3836@2|Bacteria,1MUSG@1224|Proteobacteria,2TVCG@28211|Alphaproteobacteria,3JR17@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	HpcH/HpaI aldolase/citrate lyase family	MA20_09190	-	4.1.2.52	ko:K02510	ko00350,ko01120,map00350,map01120	-	R01645,R01647	RC00307,RC00572,RC00574,RC03057	ko00000,ko00001,ko01000	-	-	-	HpcH_HpaI
SX3_k127_4334508_8	1297865.APJD01000014_gene963	1.225e-179	565.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,2TR8F@28211|Alphaproteobacteria,3JQMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_4334508_13	1297865.APJD01000014_gene964	3.206e-124	398.0	COG0607@1|root,COG0607@2|Bacteria,1MZG3@1224|Proteobacteria,2U1W0@28211|Alphaproteobacteria,3JVWG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	COG0607 Rhodanese-related sulfurtransferase	-	-	-	-	-	-	-	-	-	-	-	-	Rhodanese
SX3_k127_4334508_10	1297865.APJD01000014_gene965	1.038e-159	506.0	COG5501@1|root,COG5501@2|Bacteria,1PB0I@1224|Proteobacteria,2TR7M@28211|Alphaproteobacteria,3JVW1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfur oxidation protein SoxY	-	-	-	ko:K17226	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	SoxY,SoxZ
SX3_k127_4334508_19	1297865.APJD01000014_gene966	6.762e-71	241.0	COG1917@1|root,COG1917@2|Bacteria,1RC20@1224|Proteobacteria,2U65T@28211|Alphaproteobacteria,3JYKQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AraC-like ligand binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_4334508_9	1297865.APJD01000014_gene967	1.265e-163	515.0	COG0508@1|root,COG0508@2|Bacteria,1NBIZ@1224|Proteobacteria,2TR2F@28211|Alphaproteobacteria,3JUSR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	dehydrogenase complex catalyzes the overall conversion of	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4334508_12	1297865.APJD01000014_gene968	4.311e-128	413.0	COG0522@1|root,COG0522@2|Bacteria,1MW0U@1224|Proteobacteria,2TRQH@28211|Alphaproteobacteria,3JSTB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	rpsD	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112	-	ko:K02986	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S4,S4
SX3_k127_4334508_6	1297865.APJD01000014_gene969	6.983e-233	721.0	COG2008@1|root,COG2008@2|Bacteria,1MWCR@1224|Proteobacteria,2TSUA@28211|Alphaproteobacteria,3JSWE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aldolase	MA20_09165	-	4.1.2.48	ko:K01620	ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230	-	R00751,R06171	RC00312,RC00372	ko00000,ko00001,ko01000	-	-	-	Beta_elim_lyase
SX3_k127_4334508_2	1297865.APJD01000014_gene970	2.112e-278	858.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JU23@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_4334508_3	1297865.APJD01000014_gene971	1.889e-273	845.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JU23@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_4334508_14	1297865.APJD01000014_gene972	1.847e-113	367.0	COG2110@1|root,COG2110@2|Bacteria,1RCWP@1224|Proteobacteria,2U70V@28211|Alphaproteobacteria,3JWAP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Appr-1'-p processing enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Macro
SX3_k127_4334508_20	398525.KB900701_gene6003	1.102e-67	230.0	COG0278@1|root,COG0278@2|Bacteria,1MZ4V@1224|Proteobacteria,2U9QB@28211|Alphaproteobacteria,3JYW5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the glutaredoxin family. Monothiol subfamily	grlA	-	-	ko:K07390	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Glutaredoxin
SX3_k127_4334508_1	1297865.APJD01000014_gene974	5.024e-286	880.0	COG1262@1|root,COG1262@2|Bacteria,1MUNC@1224|Proteobacteria,2TQXE@28211|Alphaproteobacteria,3JSBE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DinB superfamily	-	-	-	-	-	-	-	-	-	-	-	-	DinB_2,FGE-sulfatase,Methyltransf_33
SX3_k127_4334508_7	1297865.APJD01000014_gene975	8.143e-210	653.0	COG4301@1|root,COG4301@2|Bacteria,1MUCG@1224|Proteobacteria,2TRMH@28211|Alphaproteobacteria,3JRIF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Histidine-specific methyltransferase, SAM-dependent	MA20_09135	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_33
SX3_k127_4334508_17	1297865.APJD01000014_gene976	4.134e-78	264.0	2E7Y2@1|root,32RX6@2|Bacteria,1R3BP@1224|Proteobacteria,2U005@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4345)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4345
SX3_k127_4334508_5	1297865.APJD01000014_gene977	1.86e-256	792.0	COG4292@1|root,COG4292@2|Bacteria,1MW5F@1224|Proteobacteria,2TQP4@28211|Alphaproteobacteria,3JQWR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial low temperature requirement A protein (LtrA)	ltrA	-	-	-	-	-	-	-	-	-	-	-	LtrA
SX3_k127_4334508_21	1230476.C207_00658	6.421e-43	158.0	COG0271@1|root,COG0271@2|Bacteria,1R3MM@1224|Proteobacteria,2UBUW@28211|Alphaproteobacteria,3K02J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Belongs to the BolA IbaG family	MA20_09125	-	-	-	-	-	-	-	-	-	-	-	BolA
SX3_k127_4334508_18	1297865.APJD01000014_gene979	1.192e-74	251.0	COG2343@1|root,COG2343@2|Bacteria,1RHXD@1224|Proteobacteria,2UC5N@28211|Alphaproteobacteria,3JYPZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF427)	MA20_09120	-	-	-	-	-	-	-	-	-	-	-	NTP_transf_9
SX3_k127_4334508_24	398525.KB900701_gene6010	2.699e-21	108.0	COG5487@1|root,COG5487@2|Bacteria,1NGAH@1224|Proteobacteria,2VBTS@28211|Alphaproteobacteria,3K120@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1328)	MA20_09110	-	-	-	-	-	-	-	-	-	-	-	DUF1328
SX3_k127_4334508_4	1297865.APJD01000014_gene981	1.026e-260	811.0	COG1835@1|root,COG1835@2|Bacteria,1MYXY@1224|Proteobacteria,2TVER@28211|Alphaproteobacteria,3JUP9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyltransferase family	MA20_09105	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_4334508_0	1297865.APJD01000014_gene982	0.0	1925.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JXAF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MMPL family	-	-	-	ko:K18138,ko:K18307	ko01501,ko01503,ko02024,map01501,map01503,map02024	M00644,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2,2.A.6.2.20,2.A.6.2.32	-	-	ACR_tran
SX3_k127_4334508_15	1297865.APJD01000014_gene983	7.683e-102	332.0	COG0845@1|root,COG0845@2|Bacteria,1MUFW@1224|Proteobacteria,2U2CU@28211|Alphaproteobacteria,3JQRQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K18306	ko02024,map02024	M00644	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2.20,2.A.6.2.32,8.A.1	-	-	HlyD_D23
SX3_k127_4362685_13	1297865.APJD01000007_gene1897	2.966e-72	243.0	COG1902@1|root,COG1902@2|Bacteria,1MVIX@1224|Proteobacteria,2TT2F@28211|Alphaproteobacteria,3JT61@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	nemA	-	-	ko:K10680	ko00633,ko01120,map00633,map01120	-	R08014,R08017,R08042	RC00250	ko00000,ko00001,ko01000	-	-	-	Oxidored_FMN
SX3_k127_4362685_12	1297865.APJD01000007_gene1896	1.579e-91	302.0	COG1846@1|root,COG1846@2|Bacteria,1RDGK@1224|Proteobacteria,2U9DY@28211|Alphaproteobacteria,3K1PU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_27,MarR,MarR_2
SX3_k127_4362685_4	1297865.APJD01000007_gene1895	4.042e-244	755.0	COG0654@1|root,COG0654@2|Bacteria,1NUP2@1224|Proteobacteria,2TUNE@28211|Alphaproteobacteria,3JZIC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
SX3_k127_4362685_17	1110502.TMO_0338	5.386e-11	65.0	COG1476@1|root,COG1476@2|Bacteria,1QXSQ@1224|Proteobacteria,2TXCI@28211|Alphaproteobacteria,2JYYT@204441|Rhodospirillales	204441|Rhodospirillales	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
SX3_k127_4362685_16	400668.Mmwyl1_1334	7.016e-13	79.0	COG0583@1|root,COG0583@2|Bacteria,1QN6R@1224|Proteobacteria,1RSKY@1236|Gammaproteobacteria,1XNQG@135619|Oceanospirillales	135619|Oceanospirillales	K	LysR family transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_4362685_0	1297865.APJD01000007_gene1894	0.0	1393.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JS2B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Bacterial signalling protein N terminal repeat	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_7
SX3_k127_4362685_10	1297865.APJD01000007_gene1893	1.3e-164	519.0	COG0457@1|root,COG0457@2|Bacteria,1PBR1@1224|Proteobacteria,2U3RU@28211|Alphaproteobacteria,3JSPH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_19,TPR_2,TPR_8
SX3_k127_4362685_8	1297865.APJD01000007_gene1892	8.267e-182	569.0	COG2267@1|root,COG2267@2|Bacteria,1R4YR@1224|Proteobacteria,2VEYN@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
SX3_k127_4362685_11	1297865.APJD01000007_gene1891	3.701e-162	510.0	28Q4W@1|root,2ZCMZ@2|Bacteria,1MX8J@1224|Proteobacteria,2U0AB@28211|Alphaproteobacteria,3JWYS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4362685_1	1230476.C207_00302	0.0	1221.0	COG1653@1|root,COG1653@2|Bacteria,1MV8A@1224|Proteobacteria,2TTPV@28211|Alphaproteobacteria,3JT82@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	COG1653 ABC-type sugar transport system, periplasmic component	MA20_44770	-	-	ko:K17321	ko02010,map02010	M00607	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.35	-	-	SBP_bac_1,SBP_bac_8
SX3_k127_4362685_14	1297865.APJD01000007_gene1889	8.106e-63	216.0	COG5477@1|root,COG5477@2|Bacteria,1N7WT@1224|Proteobacteria,2UBTZ@28211|Alphaproteobacteria,3JZHT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted small integral membrane protein (DUF2160)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2160
SX3_k127_4362685_9	1230476.C207_00300	3.433e-171	542.0	COG0395@1|root,COG0395@2|Bacteria,1MVRG@1224|Proteobacteria,2TSEK@28211|Alphaproteobacteria,3JTQH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	MA20_44780	-	-	ko:K17323	ko02010,map02010	M00607	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.35	-	-	BPD_transp_1
SX3_k127_4362685_7	1297865.APJD01000007_gene1887	3.949e-196	612.0	COG1175@1|root,COG1175@2|Bacteria,1MVAZ@1224|Proteobacteria,2TRWF@28211|Alphaproteobacteria,3JUV5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	MA20_44785	-	-	ko:K17322	ko02010,map02010	M00607	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.35	-	-	BPD_transp_1
SX3_k127_4362685_5	1297865.APJD01000007_gene1886	2.404e-235	728.0	COG3839@1|root,COG3839@2|Bacteria,1MU7W@1224|Proteobacteria,2TQNF@28211|Alphaproteobacteria,3JR55@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	MA20_44790	-	-	ko:K17325	ko02010,map02010	M00607	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.35	-	-	ABC_tran,TOBE_2
SX3_k127_4362685_6	1297865.APJD01000007_gene1885	1.817e-232	720.0	COG3842@1|root,COG3842@2|Bacteria,1QU06@1224|Proteobacteria,2TWIE@28211|Alphaproteobacteria,3JVWQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	MA20_44795	-	-	ko:K17324	ko02010,map02010	M00607	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.35	-	-	ABC_tran,TOBE,TOBE_2
SX3_k127_4362685_2	1230476.C207_00296	0.0	1007.0	COG0578@1|root,COG0578@2|Bacteria,1MUMY@1224|Proteobacteria,2TU11@28211|Alphaproteobacteria,3JS8Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family	glpD	-	1.1.5.3	ko:K00111	ko00564,ko01110,map00564,map01110	-	R00848	RC00029	ko00000,ko00001,ko01000	-	-	-	DAO,DAO_C
SX3_k127_4362685_15	1122214.AQWH01000032_gene3045	9.486e-40	152.0	COG0251@1|root,COG0251@2|Bacteria,1RHJH@1224|Proteobacteria,2U9RT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	J	endoribonuclease L-PSP	-	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP,YjgF_endoribonc
SX3_k127_4362685_3	1297865.APJD01000007_gene1883	2.584e-261	805.0	COG0436@1|root,COG0436@2|Bacteria,1MUTC@1224|Proteobacteria,2U12Z@28211|Alphaproteobacteria,3JUWJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class I and II	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2
SX3_k127_439387_0	1297865.APJD01000019_gene3350	1.194e-146	465.0	COG1472@1|root,COG1472@2|Bacteria,1NSMF@1224|Proteobacteria,2U3SF@28211|Alphaproteobacteria,3JUCU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glycosyl hydrolase family 3 N terminal domain	-	-	3.2.1.52	ko:K01207	ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501	M00628	R00022,R05963,R07809,R07810,R10831	RC00049	ko00000,ko00001,ko00002,ko01000	-	-	-	Glyco_hydro_3
SX3_k127_439387_7	172088.AUGA01000069_gene6852	1.956e-23	100.0	2BMZI@1|root,32GJG@2|Bacteria,1NQ6R@1224|Proteobacteria,2UN7I@28211|Alphaproteobacteria,3K23G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_439387_5	1297865.APJD01000019_gene3351	1.29e-78	267.0	2CI53@1|root,2ZTP9@2|Bacteria,1R3BG@1224|Proteobacteria,2U75J@28211|Alphaproteobacteria,3JYTP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_439387_3	1297865.APJD01000019_gene3352	4.188e-113	366.0	COG2197@1|root,COG2197@2|Bacteria,1PKM2@1224|Proteobacteria,2U0D3@28211|Alphaproteobacteria,3JWV1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
SX3_k127_439387_6	1297865.APJD01000019_gene3353	1.159e-40	161.0	2ABNU@1|root,3114P@2|Bacteria,1N10M@1224|Proteobacteria,2UC2Q@28211|Alphaproteobacteria,3K058@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_439387_2	1297865.APJD01000019_gene3354	4.006e-130	420.0	COG0664@1|root,COG0664@2|Bacteria,1NEQM@1224|Proteobacteria,2U1CS@28211|Alphaproteobacteria,3JRBJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator, Crp Fnr family	MA20_44180	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2,cNMP_binding
SX3_k127_439387_1	172088.AUGA01000069_gene6857	4.713e-138	441.0	COG0664@1|root,COG0664@2|Bacteria,1NEQM@1224|Proteobacteria,2U3W1@28211|Alphaproteobacteria,3JWGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cyclic nucleotide-monophosphate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2,cNMP_binding
SX3_k127_439387_4	1230476.C207_06397	2.321e-85	284.0	COG1344@1|root,COG1344@2|Bacteria,1MXC4@1224|Proteobacteria,2TRIP@28211|Alphaproteobacteria,3JT0V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	-	-	-	-	-	-	-	-	-	-	-	-	DUF1522,Flagellin_C,Flagellin_IN,Flagellin_N
SX3_k127_4402724_11	1297865.APJD01000004_gene5294	7.421e-48	171.0	COG0179@1|root,COG0179@2|Bacteria,1MUPF@1224|Proteobacteria,2TQQG@28211|Alphaproteobacteria,3JQYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	MA20_19215	-	5.3.3.10	ko:K01826	ko00350,ko01120,ko01220,map00350,map01120,map01220	M00533	R04379,R04482	RC01141,RC01162	ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
SX3_k127_4402724_7	1297865.APJD01000004_gene5295	2.301e-134	432.0	COG0625@1|root,COG0625@2|Bacteria,1RHSK@1224|Proteobacteria,2U5GF@28211|Alphaproteobacteria,3JWEW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase	MA20_19220	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N_3
SX3_k127_4402724_0	1297865.APJD01000004_gene5296	2.045e-267	823.0	COG1680@1|root,COG1680@2|Bacteria,1NHIY@1224|Proteobacteria,2U0A3@28211|Alphaproteobacteria,3JT7A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_4402724_2	1297865.APJD01000004_gene5297	4.986e-202	628.0	COG0491@1|root,COG0491@2|Bacteria,1NK1F@1224|Proteobacteria,2TR5Q@28211|Alphaproteobacteria,3JSQP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	MA20_19225	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_4402724_8	1297865.APJD01000004_gene5298	1.79e-116	376.0	COG0350@1|root,COG0350@2|Bacteria,1MVF7@1224|Proteobacteria,2TV5U@28211|Alphaproteobacteria,3JTW0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	6-O-methylguanine DNA methyltransferase, DNA binding domain	ogt	-	2.1.1.63	ko:K00567	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_binding_1
SX3_k127_4402724_3	1297865.APJD01000004_gene5299	7.597e-181	567.0	COG0596@1|root,COG0596@2|Bacteria,1R9VJ@1224|Proteobacteria,2U26I@28211|Alphaproteobacteria,3JQRZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	MA20_06765	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_4402724_9	1297865.APJD01000004_gene5300	1.602e-90	299.0	COG2128@1|root,COG2128@2|Bacteria,1RIKK@1224|Proteobacteria,2U9KG@28211|Alphaproteobacteria,3JX3V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	MA20_06775	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_4402724_5	1297865.APJD01000004_gene5301	2.743e-172	542.0	COG1595@1|root,COG1595@2|Bacteria,1MXVA@1224|Proteobacteria,2TV85@28211|Alphaproteobacteria,3JR9S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	MA20_06780	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2,SnoaL_2
SX3_k127_4402724_1	1297865.APJD01000004_gene5302	1.129e-260	805.0	COG0624@1|root,COG0624@2|Bacteria,1MUSU@1224|Proteobacteria,2TV23@28211|Alphaproteobacteria,3JSS1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M28	-	-	3.4.17.11	ko:K01295	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_4402724_6	1297865.APJD01000004_gene5303	1.004e-136	437.0	COG1802@1|root,COG1802@2|Bacteria,1MY2M@1224|Proteobacteria,2TTYE@28211|Alphaproteobacteria,3JSY3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	MA20_06790	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_4402724_4	1297865.APJD01000004_gene5304	1.517e-177	557.0	COG5285@1|root,COG5285@2|Bacteria,1MWD5@1224|Proteobacteria,2U0FP@28211|Alphaproteobacteria,3JQUW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phytanoyl-CoA dioxygenase (PhyH)	MA20_06795	-	1.14.11.55	ko:K10674	ko00260,ko01120,map00260,map01120	-	R08050	RC00661	ko00000,ko00001,ko01000	-	-	-	PhyH
SX3_k127_4402724_13	224911.27354970	5.724e-05	46.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_4402724_10	1297865.APJD01000004_gene5305	3.666e-58	203.0	COG4091@1|root,COG4091@2|Bacteria,1MUZX@1224|Proteobacteria,2TRZ0@28211|Alphaproteobacteria,3JSZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	SAF	MA20_06800	-	1.1.1.3	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	M00017,M00018	R01773,R01775	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GFO_IDH_MocA,NAD_binding_3,SAF
SX3_k127_4423154_4	1297865.APJD01000006_gene4337	0.0	994.0	COG1070@1|root,COG1070@2|Bacteria,1MW4A@1224|Proteobacteria,2TR7P@28211|Alphaproteobacteria,3JRNR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	FGGY family of carbohydrate kinases, N-terminal domain	-	-	2.7.1.17	ko:K00854	ko00040,ko01100,map00040,map01100	M00014	R01639	RC00002,RC00538	ko00000,ko00001,ko00002,ko01000	-	-	-	FGGY_C,FGGY_N
SX3_k127_4423154_17	1297865.APJD01000006_gene4338	7.759e-168	538.0	COG0561@1|root,COG0561@2|Bacteria,1R4WX@1224|Proteobacteria,2TSDR@28211|Alphaproteobacteria,3JWTT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	hydrolases of the HAD superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_3
SX3_k127_4423154_7	1297865.APJD01000006_gene4339	1.037e-235	730.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,3JXTJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	-	-	-	ko:K10112	ko02010,map02010	M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1	-	-	ABC_tran,TOBE_2
SX3_k127_4423154_0	1297865.APJD01000006_gene4340	0.0	1141.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,3JWT5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	-	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N,NAD_binding_8
SX3_k127_4423154_9	1297865.APJD01000006_gene4341	6.22e-220	683.0	COG3347@1|root,COG3347@2|Bacteria,1N1X4@1224|Proteobacteria,2U26B@28211|Alphaproteobacteria,3JVI2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Class II Aldolase and Adducin N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
SX3_k127_4423154_15	1297865.APJD01000006_gene4342	5.447e-181	576.0	COG0647@1|root,COG0647@2|Bacteria,1MU9Y@1224|Proteobacteria,2U87F@28211|Alphaproteobacteria,3JVUX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_6,Hydrolase_like
SX3_k127_4423154_5	1297865.APJD01000006_gene4343	1.462e-271	836.0	COG1070@1|root,COG1070@2|Bacteria,1MW4A@1224|Proteobacteria,2TQX6@28211|Alphaproteobacteria,3JTAC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	FGGY family of carbohydrate kinases, C-terminal domain	-	-	2.7.1.17	ko:K00854	ko00040,ko01100,map00040,map01100	M00014	R01639	RC00002,RC00538	ko00000,ko00001,ko00002,ko01000	-	-	-	FGGY_C,FGGY_N
SX3_k127_4423154_10	1297865.APJD01000006_gene4344	1.145e-210	656.0	COG2390@1|root,COG2390@2|Bacteria,1MWHQ@1224|Proteobacteria,2TSIT@28211|Alphaproteobacteria,3JT0M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Putative sugar-binding domain	eryD	-	-	-	-	-	-	-	-	-	-	-	Sugar-bind
SX3_k127_4423154_3	1297865.APJD01000006_gene4345	0.0	1000.0	COG1653@1|root,COG1653@2|Bacteria,1R45P@1224|Proteobacteria,2U0YH@28211|Alphaproteobacteria,3JRA7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_1
SX3_k127_4423154_13	1297865.APJD01000006_gene4346	2.084e-193	604.0	COG1175@1|root,COG1175@2|Bacteria,1PGBC@1224|Proteobacteria,2U1DG@28211|Alphaproteobacteria,3JUUX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02025	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_4423154_16	1297865.APJD01000006_gene4347	7.35e-173	545.0	COG0395@1|root,COG0395@2|Bacteria,1N0IZ@1224|Proteobacteria,2TZME@28211|Alphaproteobacteria,3JSAD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_4423154_19	1185652.USDA257_c12990	4.187e-95	323.0	COG3839@1|root,COG3839@2|Bacteria,1QY5X@1224|Proteobacteria,2TXHG@28211|Alphaproteobacteria,4BIXF@82115|Rhizobiaceae	28211|Alphaproteobacteria	G	ATPases associated with a variety of cellular activities	-	-	-	ko:K10112	ko02010,map02010	M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1	-	-	ABC_tran
SX3_k127_4423154_6	1297865.APJD01000006_gene4349	1.346e-246	766.0	COG3842@1|root,COG3842@2|Bacteria,1QW8T@1224|Proteobacteria,2TWT9@28211|Alphaproteobacteria,3JS72@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TOBE domain	-	-	-	ko:K10112	ko02010,map02010	M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1	-	-	ABC_tran,TOBE_2
SX3_k127_4423154_1	1297865.APJD01000006_gene4350	0.0	1068.0	COG1070@1|root,COG1070@2|Bacteria,1MW4A@1224|Proteobacteria,2TVIT@28211|Alphaproteobacteria,3K5ZA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the FGGY kinase family	eryA	-	2.7.1.215	ko:K00862	-	-	R11536	RC00017	ko00000,ko01000	-	-	-	FGGY_C,FGGY_N
SX3_k127_4423154_11	189753.AXAS01000002_gene5205	2.738e-201	632.0	COG0111@1|root,COG0111@2|Bacteria,1NU4B@1224|Proteobacteria,2TTQG@28211|Alphaproteobacteria,3JWQI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	-	-	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_4423154_18	1297865.APJD01000006_gene4352	1.603e-153	487.0	COG0235@1|root,COG0235@2|Bacteria,1MW7B@1224|Proteobacteria,2U1NG@28211|Alphaproteobacteria,3JUW4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	fucA	-	4.1.2.17	ko:K01628	ko00051,ko01120,map00051,map01120	-	R02262	RC00603,RC00604	ko00000,ko00001,ko01000	-	-	-	Aldolase_II
SX3_k127_4423154_2	1297865.APJD01000006_gene4353	0.0	1034.0	COG0578@1|root,COG0578@2|Bacteria,1MUMY@1224|Proteobacteria,2TU11@28211|Alphaproteobacteria,3JTE1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family	eryB	-	1.1.1.402,1.1.5.3	ko:K00111,ko:K21054	ko00564,ko01110,map00564,map01110	-	R00848	RC00029	ko00000,ko00001,ko01000	-	-	-	DAO,DAO_C
SX3_k127_4423154_12	1297865.APJD01000006_gene4354	1.904e-194	607.0	COG0583@1|root,COG0583@2|Bacteria,1MX2A@1224|Proteobacteria,2TV0H@28211|Alphaproteobacteria,3JQXU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	MA20_04270	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_4423154_8	1297865.APJD01000006_gene4355	2.621e-225	700.0	COG0687@1|root,COG0687@2|Bacteria,1MWG5@1224|Proteobacteria,2TTP2@28211|Alphaproteobacteria,3JV3Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding protein	MA20_04265	-	-	ko:K02055	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	SBP_bac_6,SBP_bac_8
SX3_k127_4423154_14	1297865.APJD01000006_gene4356	3.776e-189	591.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,3JRKH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system	MA20_04260	-	-	ko:K02049,ko:K02052	ko02024,map02024	M00188,M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11,3.A.1.16,3.A.1.17	-	-	ABC_tran,TOBE_2
SX3_k127_4437096_18	1297865.APJD01000023_gene1119	3.125e-128	413.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,3JSG0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Belongs to the ABC transporter superfamily	MA20_20680	-	-	ko:K02031	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_4437096_15	1297865.APJD01000023_gene1118	4.923e-168	531.0	COG1173@1|root,COG1173@2|Bacteria,1MU26@1224|Proteobacteria,2TTEV@28211|Alphaproteobacteria,3JSKA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	MA20_20685	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_4437096_13	1297865.APJD01000023_gene1117	3.491e-194	607.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TSF3@28211|Alphaproteobacteria,3JQWP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	appB	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_4437096_1	1230476.C207_05369	0.0	1239.0	COG0747@1|root,COG0747@2|Bacteria,1MUP8@1224|Proteobacteria,2TQXX@28211|Alphaproteobacteria,3JT8W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	appA	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_4437096_7	1297865.APJD01000023_gene1115	3.617e-314	962.0	COG1473@1|root,COG1473@2|Bacteria,1MX6N@1224|Proteobacteria,2TRSE@28211|Alphaproteobacteria,3JRMS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase family M20/M25/M40	MA20_20700	-	-	ko:K12941	-	-	-	-	ko00000,ko01002	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_4437096_8	1297865.APJD01000023_gene1114	4.564e-302	926.0	COG1409@1|root,COG1409@2|Bacteria,1PNXB@1224|Proteobacteria,2U4JF@28211|Alphaproteobacteria,3JUZR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos
SX3_k127_4437096_23	1297865.APJD01000023_gene1113	2.824e-40	150.0	2AEEH@1|root,32541@2|Bacteria,1NEPR@1224|Proteobacteria,2UG6P@28211|Alphaproteobacteria,3K172@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4437096_22	1297865.APJD01000023_gene1112	3.839e-69	235.0	COG2197@1|root,COG2197@2|Bacteria,1QW7K@1224|Proteobacteria,2U79M@28211|Alphaproteobacteria,3JYQM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
SX3_k127_4437096_14	1297865.APJD01000023_gene1111	6.028e-174	547.0	COG0265@1|root,COG0265@2|Bacteria,1N1NJ@1224|Proteobacteria,2TT36@28211|Alphaproteobacteria,3JU6W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Domain present in PSD-95, Dlg, and ZO-1/2.	-	-	-	-	-	-	-	-	-	-	-	-	PDZ_2,Trypsin_2
SX3_k127_4437096_21	1238182.C882_2436	6.315e-74	255.0	COG0745@1|root,COG0745@2|Bacteria,1MWZ5@1224|Proteobacteria,2TV3A@28211|Alphaproteobacteria,2JRV6@204441|Rhodospirillales	204441|Rhodospirillales	T	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	kdpE	-	-	ko:K07667	ko02020,ko02024,map02020,map02024	M00454	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_4437096_4	1297865.APJD01000023_gene1109	0.0	1058.0	COG0642@1|root,COG2205@2|Bacteria,1NC1Z@1224|Proteobacteria,2U2BU@28211|Alphaproteobacteria,3JXGD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Domain of unknown function (DUF4118)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4118,HATPase_c,HisKA
SX3_k127_4437096_19	1297865.APJD01000023_gene1108	7.724e-123	400.0	2BS23@1|root,32M2V@2|Bacteria,1R6AR@1224|Proteobacteria,2U212@28211|Alphaproteobacteria,3JXP1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4437096_2	1297865.APJD01000023_gene1107	0.0	1130.0	COG2067@1|root,COG2067@2|Bacteria,1R6CQ@1224|Proteobacteria,2TTSU@28211|Alphaproteobacteria,3JVVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Putative beta-barrel porin-2, OmpL-like. bbp2	-	-	-	-	-	-	-	-	-	-	-	-	BBP2
SX3_k127_4437096_17	1297865.APJD01000023_gene1106	1.361e-151	481.0	COG3637@1|root,COG3637@2|Bacteria,1R8ZN@1224|Proteobacteria,2U57I@28211|Alphaproteobacteria,3JXZG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	OmpA-like transmembrane domain	-	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_4437096_25	1230476.C207_05381	6.917e-22	102.0	2AQZ8@1|root,31G7Z@2|Bacteria,1P8W8@1224|Proteobacteria,2UYTY@28211|Alphaproteobacteria,3K5NJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4437096_24	1297865.APJD01000023_gene1105	4.668e-36	138.0	2AMST@1|root,31CP9@2|Bacteria,1P2PE@1224|Proteobacteria,2UVQE@28211|Alphaproteobacteria,3K4ZB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4437096_11	1297865.APJD01000023_gene1104	1.559e-214	670.0	COG2207@1|root,COG2207@2|Bacteria,1R81X@1224|Proteobacteria,2U0BK@28211|Alphaproteobacteria,3JVCY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AraC-binding-like domain	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_4437096_20	1297865.APJD01000023_gene1103	2.478e-95	314.0	COG1917@1|root,COG1917@2|Bacteria,1PX7F@1224|Proteobacteria,2TVA3@28211|Alphaproteobacteria,3JUHP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AraC-like ligand binding domain	MA20_01180	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_4437096_5	1297865.APJD01000023_gene1102	0.0	1037.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TTY2@28211|Alphaproteobacteria,3JUUJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	MA20_01175	-	-	-	-	-	-	-	-	-	-	-	FMO-like,K_oxygenase
SX3_k127_4437096_16	1297865.APJD01000023_gene1101	8.554e-164	515.0	COG1075@1|root,COG1075@2|Bacteria,1QWJI@1224|Proteobacteria,2TWZK@28211|Alphaproteobacteria,3JTP0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	MA20_40150	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_4437096_12	1297865.APJD01000023_gene1100	1.384e-211	659.0	COG2207@1|root,COG2207@2|Bacteria,1NFPK@1224|Proteobacteria,2U1I2@28211|Alphaproteobacteria,3JUC8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AraC-binding-like domain	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_4437096_10	1297865.APJD01000023_gene1099	2.524e-223	696.0	COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2TSK0@28211|Alphaproteobacteria,3JUM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Iron-containing alcohol dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Fe-ADH
SX3_k127_4437096_6	1297865.APJD01000023_gene1098	0.0	1009.0	COG2723@1|root,COG2723@2|Bacteria,1MWG6@1224|Proteobacteria,2TSRN@28211|Alphaproteobacteria,3JQT9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	bglA	-	3.2.1.21	ko:K05350	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	-	R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko01000	-	-	-	Glyco_hydro_1
SX3_k127_4437096_0	1297865.APJD01000023_gene1097	0.0	1752.0	COG0308@1|root,COG0308@2|Bacteria,1MUCI@1224|Proteobacteria,2TRUM@28211|Alphaproteobacteria,3JXAV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M1 domain	-	-	3.4.11.2	ko:K01256	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	DUF3458,DUF3458_C,ERAP1_C,Peptidase_M1
SX3_k127_4437096_3	1297865.APJD01000023_gene1096	0.0	1094.0	COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2TSB1@28211|Alphaproteobacteria,3JS64@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, central domain	budB	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_4437096_9	1230476.C207_05392	1.031e-288	888.0	COG0033@1|root,COG0033@2|Bacteria,1MU5S@1224|Proteobacteria,2TRUJ@28211|Alphaproteobacteria,3JQY8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III	MA20_45030	-	5.4.2.2	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	M00549	R00959,R01057,R08639	RC00408	ko00000,ko00001,ko00002,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
SX3_k127_4440294_23	1297865.APJD01000023_gene1095	2.703e-84	279.0	COG0033@1|root,COG0033@2|Bacteria,1MU5S@1224|Proteobacteria,2TRUJ@28211|Alphaproteobacteria,3JQY8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III	MA20_45030	-	5.4.2.2	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	M00549	R00959,R01057,R08639	RC00408	ko00000,ko00001,ko00002,ko01000	-	-	-	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
SX3_k127_4440294_9	1297865.APJD01000023_gene1094	3.205e-204	637.0	COG0451@1|root,COG0451@2|Bacteria,1QP8J@1224|Proteobacteria,2U09V@28211|Alphaproteobacteria,3JSK8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Male sterility protein	-	-	5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase
SX3_k127_4440294_15	1245469.S58_15250	6.072e-148	473.0	COG0329@1|root,COG0329@2|Bacteria,1MXI1@1224|Proteobacteria,2TTWT@28211|Alphaproteobacteria,3JT10@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EM	Belongs to the DapA family	MA20_04665	-	4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000	-	-	-	DHDPS
SX3_k127_4440294_1	1297865.APJD01000023_gene1092	0.0	1536.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TRRY@28211|Alphaproteobacteria,3JRVU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	MA20_04660	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_4440294_6	1297865.APJD01000023_gene1091	3.446e-263	811.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TQRA@28211|Alphaproteobacteria,3JU4G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	MA20_04655	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_4440294_8	1297865.APJD01000023_gene1090	5.383e-236	734.0	COG1960@1|root,COG1960@2|Bacteria,1MUBH@1224|Proteobacteria,2TSKH@28211|Alphaproteobacteria,3JST4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_4440294_11	1297865.APJD01000023_gene1089	3.487e-184	596.0	COG1024@1|root,COG1024@2|Bacteria,1R3U7@1224|Proteobacteria,2TV9G@28211|Alphaproteobacteria,3JU2F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_04645	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_4440294_19	1297865.APJD01000023_gene1088	1.272e-126	407.0	COG1704@1|root,COG1704@2|Bacteria,1MVH0@1224|Proteobacteria,2TRJR@28211|Alphaproteobacteria,3JTSH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	LemA family	lemA	-	-	ko:K03744	-	-	-	-	ko00000	-	-	-	LemA
SX3_k127_4440294_12	1297865.APJD01000023_gene1087	6.964e-175	552.0	COG1512@1|root,COG1512@2|Bacteria,1PB41@1224|Proteobacteria,2TUVD@28211|Alphaproteobacteria,3JSS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	TPM domain	-	-	-	ko:K06872	-	-	-	-	ko00000	-	-	-	TPM_phosphatase
SX3_k127_4440294_20	1297865.APJD01000023_gene1086	2.509e-105	345.0	COG3762@1|root,COG3762@2|Bacteria,1R61N@1224|Proteobacteria,2U5XG@28211|Alphaproteobacteria,3JUPW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	TPM domain	-	-	-	ko:K08988	-	-	-	-	ko00000	-	-	-	TPM_phosphatase
SX3_k127_4440294_4	1297865.APJD01000023_gene1085	4.961e-276	852.0	COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,2TQVP@28211|Alphaproteobacteria,3JRB3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	ko:K03762	-	-	-	-	ko00000,ko02000	2.A.1.6.4	-	-	MFS_1,Sugar_tr
SX3_k127_4440294_17	1297865.APJD01000023_gene1084	4.918e-137	436.0	COG0625@1|root,COG0625@2|Bacteria,1Q05U@1224|Proteobacteria,2TTDK@28211|Alphaproteobacteria,3JVWD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_4440294_13	1297865.APJD01000023_gene1083	6.554e-173	548.0	COG0491@1|root,COG0491@2|Bacteria,1N6PM@1224|Proteobacteria,2TRZ4@28211|Alphaproteobacteria,3JSCF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_4440294_24	1297865.APJD01000023_gene1082	1.02e-69	239.0	COG0664@1|root,COG0664@2|Bacteria,1RDJV@1224|Proteobacteria,2U73G@28211|Alphaproteobacteria,3JYP3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Cyclic nucleotide-monophosphate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	cNMP_binding
SX3_k127_4440294_10	1297865.APJD01000023_gene1081	2.211e-188	592.0	COG4223@1|root,COG4223@2|Bacteria,1MW1G@1224|Proteobacteria,2TVKB@28211|Alphaproteobacteria,3JRNP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	DZ	transferase activity, transferring acyl groups other than amino-acyl groups	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4440294_3	1297865.APJD01000023_gene1080	0.0	1054.0	28Q2A@1|root,2ZCKB@2|Bacteria,1MY0Q@1224|Proteobacteria,2U0CB@28211|Alphaproteobacteria,3JRUJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4440294_28	1297865.APJD01000023_gene1079	1.286e-23	100.0	29EED@1|root,31564@2|Bacteria,1NCQC@1224|Proteobacteria,2UGVT@28211|Alphaproteobacteria,3K15R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4440294_16	1297865.APJD01000023_gene1078	3.542e-146	464.0	COG0625@1|root,COG0625@2|Bacteria,1REDI@1224|Proteobacteria,2TR9W@28211|Alphaproteobacteria,3JUD0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_04615	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_4440294_5	1230476.C207_05407	8.692e-276	848.0	COG1804@1|root,COG1804@2|Bacteria,1MWPB@1224|Proteobacteria,2U1YE@28211|Alphaproteobacteria,3JS2K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_04610	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_4440294_0	1297865.APJD01000023_gene1076	0.0	1954.0	COG0506@1|root,COG4230@1|root,COG0506@2|Bacteria,COG4230@2|Bacteria,1MV93@1224|Proteobacteria,2TQPT@28211|Alphaproteobacteria,3JRB4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Oxidizes proline to glutamate for use as a carbon and nitrogen source	putA	-	1.2.1.88,1.5.5.2	ko:K13821	ko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130	-	R00245,R00707,R00708,R01253,R04444,R04445,R05051	RC00080,RC00083,RC00216,RC00242,RC00255	ko00000,ko00001,ko01000,ko03000	-	-	-	Aldedh,Pro_dh,Pro_dh-DNA_bdg
SX3_k127_4440294_21	398525.KB900701_gene7089	3.573e-94	309.0	COG1522@1|root,COG1522@2|Bacteria,1MX7R@1224|Proteobacteria,2U7B2@28211|Alphaproteobacteria,3JRDD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	lrp	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_24,HTH_AsnC-type
SX3_k127_4440294_18	1297865.APJD01000023_gene1074	6.314e-133	424.0	2CDCV@1|root,308Y1@2|Bacteria,1N74F@1224|Proteobacteria,2TUJ4@28211|Alphaproteobacteria,3JRWU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4440294_14	1297865.APJD01000023_gene1073	8.892e-157	498.0	COG0500@1|root,COG2226@2|Bacteria,1R92P@1224|Proteobacteria,2VEX9@28211|Alphaproteobacteria,3JWE4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_4440294_27	1230476.C207_05412	1.455e-32	138.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,3K06Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	'Cold-shock' DNA-binding domain	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
SX3_k127_4440294_25	1297865.APJD01000023_gene1072	5.315e-61	212.0	COG2010@1|root,COG2010@2|Bacteria,1NC9D@1224|Proteobacteria,2UGP9@28211|Alphaproteobacteria,3JZM8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4440294_7	1297865.APJD01000023_gene1071	4.82e-263	811.0	COG2041@1|root,COG2041@2|Bacteria,1MX9E@1224|Proteobacteria,2TRK0@28211|Alphaproteobacteria,3JRNN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Mo-co oxidoreductase dimerisation domain	MA20_04585	-	-	-	-	-	-	-	-	-	-	-	Mo-co_dimer,Oxidored_molyb
SX3_k127_4440294_26	1297865.APJD01000023_gene1070	1.046e-60	210.0	2ADBI@1|root,3010W@2|Bacteria,1N5TH@1224|Proteobacteria,2UDR5@28211|Alphaproteobacteria,3K0BC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4440294_2	1297865.APJD01000023_gene1069	0.0	1167.0	COG0633@1|root,COG2114@1|root,COG0633@2|Bacteria,COG2114@2|Bacteria,1N5XC@1224|Proteobacteria,2TRGX@28211|Alphaproteobacteria,3JQU2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CT	Adenylyl- / guanylyl cyclase, catalytic domain	cyaA	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2,Guanylate_cyc
SX3_k127_4440294_22	1297865.APJD01000023_gene1068	1.663e-84	283.0	COG1807@1|root,COG1807@2|Bacteria,1P6JE@1224|Proteobacteria,2TV39@28211|Alphaproteobacteria,3JRJ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	PMT_2
SX3_k127_4448132_2	1122137.AQXF01000001_gene2950	5.068e-52	190.0	COG1024@1|root,COG1024@2|Bacteria,1PJ4R@1224|Proteobacteria,2TSSU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_4448132_0	485913.Krac_9671	6.892e-63	226.0	COG0702@1|root,COG0702@2|Bacteria	2|Bacteria	GM	epimerase	-	-	-	-	-	-	-	-	-	-	-	-	NmrA
SX3_k127_4448132_1	1197906.CAJQ02000056_gene3680	1.03e-61	214.0	28WAF@1|root,2ZIAY@2|Bacteria,1R22W@1224|Proteobacteria,2TZ9J@28211|Alphaproteobacteria,3K70Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3991)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3991,Toprim_2
SX3_k127_4463828_3	1297865.APJD01000026_gene2396	4.257e-47	174.0	2B8MF@1|root,321WS@2|Bacteria,1N4A0@1224|Proteobacteria,2UCWJ@28211|Alphaproteobacteria,3K02W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4463828_0	1297865.APJD01000026_gene2395	0.0	1248.0	COG3158@1|root,COG3158@2|Bacteria,1MUVH@1224|Proteobacteria,2TRVJ@28211|Alphaproteobacteria,3JTDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Transport of potassium into the cell	kup3	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662	-	ko:K03549	-	-	-	-	ko00000,ko02000	2.A.72	-	-	K_trans
SX3_k127_4463828_2	1297865.APJD01000026_gene2394	3.165e-207	649.0	COG3173@1|root,COG3173@2|Bacteria,1QPYD@1224|Proteobacteria,2TSV1@28211|Alphaproteobacteria,3JWZX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phosphotransferase enzyme family	-	-	-	-	-	-	-	-	-	-	-	-	APH
SX3_k127_4463828_1	1297865.APJD01000026_gene2393	8.258e-221	685.0	COG0188@1|root,COG0188@2|Bacteria,1MUGG@1224|Proteobacteria,2TSPQ@28211|Alphaproteobacteria,3JSSS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	gyrA	-	5.99.1.3	ko:K02469	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	DNA_gyraseA_C,DNA_topoisoIV
SX3_k127_4468419_5	1297865.APJD01000007_gene2311	4.609e-109	353.0	COG2072@1|root,COG2072@2|Bacteria,1NSY9@1224|Proteobacteria,2TUSD@28211|Alphaproteobacteria,3JUMD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	MA20_26775	-	1.14.13.22	ko:K03379	ko00930,ko01120,ko01220,map00930,map01120,map01220	-	R02231,R06622	RC00662,RC01550	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_3
SX3_k127_4468419_1	1297865.APJD01000007_gene2310	7.765e-283	869.0	COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,2TSK3@28211|Alphaproteobacteria,3JWBK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_16145	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_4468419_4	1297865.APJD01000007_gene2309	6.974e-168	528.0	COG1414@1|root,COG1414@2|Bacteria,1R4WS@1224|Proteobacteria,2TV0A@28211|Alphaproteobacteria,3JTY6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix isocitrate lyase regulation	-	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR,IclR
SX3_k127_4468419_2	1297865.APJD01000007_gene2308	5.533e-212	667.0	COG3181@1|root,COG3181@2|Bacteria,1R9KJ@1224|Proteobacteria,2U22P@28211|Alphaproteobacteria,3JVC2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_4468419_0	1297865.APJD01000007_gene2307	6.929e-294	909.0	COG0477@1|root,COG0477@2|Bacteria,1MWUR@1224|Proteobacteria,2TT7N@28211|Alphaproteobacteria,3JU94@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_17480	-	-	ko:K08169	-	-	-	-	ko00000,ko02000	2.A.1.3.17	-	-	MFS_1
SX3_k127_4468419_6	1502851.FG93_05708	6.779e-59	208.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U6Z6@28211|Alphaproteobacteria,3JQR4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	MA20_17490	-	1.3.99.16	ko:K07302	-	-	-	-	ko00000,ko01000	-	-	-	Fer2,Fer2_2
SX3_k127_4468419_3	1297865.APJD01000007_gene2305	9.237e-208	649.0	COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,2TQVK@28211|Alphaproteobacteria,3JSW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	MA20_17495	-	1.3.99.16	ko:K07303	-	-	-	-	ko00000,ko01000	-	-	-	Ald_Xan_dh_C2
SX3_k127_4469512_5	1297865.APJD01000005_gene3805	5.905e-74	249.0	2EFPW@1|root,339FW@2|Bacteria,1N7X2@1224|Proteobacteria,2UAPI@28211|Alphaproteobacteria,3JYXC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	VanZ
SX3_k127_4469512_2	1297865.APJD01000005_gene3804	5.308e-218	677.0	COG1087@1|root,COG1087@2|Bacteria,1MUHI@1224|Proteobacteria,2TTC7@28211|Alphaproteobacteria,3JUVY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	3-beta hydroxysteroid dehydrogenase/isomerase family	exoB	-	5.1.3.2,5.1.3.5	ko:K01784,ko:K12448	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R01473,R02984	RC00289,RC00528	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase
SX3_k127_4469512_6	1297865.APJD01000005_gene3803	3.86e-43	158.0	2ARR6@1|root,31H29@2|Bacteria,1NFHN@1224|Proteobacteria,2UGZ7@28211|Alphaproteobacteria,3K17V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4469512_4	1297865.APJD01000005_gene3802	8.777e-145	462.0	COG1192@1|root,COG1192@2|Bacteria,1R6DZ@1224|Proteobacteria,2U4CB@28211|Alphaproteobacteria,3JXCW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	AAA domain	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31,CbiA
SX3_k127_4469512_1	1297865.APJD01000005_gene3801	9.751e-265	817.0	COG0438@1|root,COG0438@2|Bacteria,1NJ19@1224|Proteobacteria,2TRT4@28211|Alphaproteobacteria,3JTE2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Gkycosyl transferase family 4 group	expC	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_3,Glycos_transf_1
SX3_k127_4469512_3	1297865.APJD01000005_gene3800	1.788e-153	491.0	2DQYV@1|root,339FM@2|Bacteria,1R5T8@1224|Proteobacteria,2U2DY@28211|Alphaproteobacteria,3JT12@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4469512_0	1297865.APJD01000005_gene3799	9.228e-289	887.0	COG1216@1|root,COG1216@2|Bacteria,1QP7Y@1224|Proteobacteria,2TR34@28211|Alphaproteobacteria,3JSZF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	DUF616,Glyco_tranf_2_3,Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1,Glycos_transf_2
SX3_k127_4470288_2	1297865.APJD01000006_gene4501	1.277e-151	479.0	COG0665@1|root,COG0665@2|Bacteria,1N1TN@1224|Proteobacteria,2TR7B@28211|Alphaproteobacteria,3JVCV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	thiO	-	1.4.3.19	ko:K03153	ko00730,ko01100,map00730,map01100	-	R07463	RC01788	ko00000,ko00001,ko01000	-	-	-	DAO
SX3_k127_4470288_4	172088.AUGA01000004_gene4023	4.221e-29	124.0	COG2104@1|root,COG2104@2|Bacteria,1NG8E@1224|Proteobacteria,2UJK6@28211|Alphaproteobacteria,3K1A9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	thiamine biosynthesis protein ThiS	thiS	-	-	ko:K03154	ko04122,map04122	-	-	-	ko00000,ko00001	-	-	-	ThiS
SX3_k127_4470288_1	1297865.APJD01000006_gene4499	6.259e-163	516.0	COG2022@1|root,COG2022@2|Bacteria,1N0N5@1224|Proteobacteria,2TSXS@28211|Alphaproteobacteria,3JTCB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S	thiG	-	2.8.1.10	ko:K03149	ko00730,ko01100,map00730,map01100	-	R10247	RC03096,RC03097,RC03461	ko00000,ko00001,ko01000	-	-	-	ThiG,ThiS
SX3_k127_4470288_3	1038859.AXAU01000013_gene6591	1.847e-99	328.0	COG0352@1|root,COG0352@2|Bacteria,1RDSU@1224|Proteobacteria,2TSXT@28211|Alphaproteobacteria,3JSCI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)	thiE	-	2.5.1.3	ko:K00788	ko00730,ko01100,map00730,map01100	M00127	R03223,R10712	RC00224,RC03255,RC03397	ko00000,ko00001,ko00002,ko01000	-	-	-	TMP-TENI
SX3_k127_4470288_0	1297865.APJD01000006_gene4497	1.725e-318	975.0	COG0422@1|root,COG0422@2|Bacteria,1MUVV@1224|Proteobacteria,2TS0S@28211|Alphaproteobacteria,3JUK5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction	thiC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.1.99.17	ko:K03147	ko00730,ko01100,map00730,map01100	M00127	R03472	RC03251,RC03252	ko00000,ko00001,ko00002,ko01000	-	-	-	ThiC-associated,ThiC_Rad_SAM
SX3_k127_4477568_3	1297865.APJD01000003_gene6099	1.869e-88	295.0	COG2197@1|root,COG2197@2|Bacteria,1NB2U@1224|Proteobacteria,2UH2Z@28211|Alphaproteobacteria,3JX57@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_4477568_1	1297865.APJD01000003_gene6100	4.343e-149	474.0	COG5640@1|root,COG5640@2|Bacteria,1NPS4@1224|Proteobacteria,2U4PS@28211|Alphaproteobacteria,3JTQ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Trypsin-like serine protease	MA20_23090	-	-	-	-	-	-	-	-	-	-	-	Trypsin
SX3_k127_4477568_0	1297865.APJD01000003_gene6101	0.0	1396.0	COG0045@1|root,COG1042@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2TR24@28211|Alphaproteobacteria,3JS3N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA binding domain	MA20_23020	-	-	ko:K09181	-	-	-	-	ko00000	-	-	-	ATP-grasp_5,CoA_binding_2,Succ_CoA_lig
SX3_k127_4477568_2	1297865.APJD01000003_gene6102	1.627e-124	399.0	COG3764@1|root,COG3764@2|Bacteria,1P806@1224|Proteobacteria,2U0A5@28211|Alphaproteobacteria,3JWBT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Sortase family	-	-	3.4.22.70	ko:K07284	-	-	-	-	ko00000,ko01000,ko01002,ko01011	-	-	-	Sortase
SX3_k127_4481259_4	1297865.APJD01000021_gene3066	7.105e-15	74.0	2EW85@1|root,33PM1@2|Bacteria,1MXDD@1224|Proteobacteria,2TU7X@28211|Alphaproteobacteria,3JWUG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_39245	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4481259_2	1297865.APJD01000021_gene3067	1.117e-162	512.0	COG1525@1|root,COG1525@2|Bacteria,1N145@1224|Proteobacteria,2UCUE@28211|Alphaproteobacteria,3JTEQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Staphylococcal nuclease homologue	MA20_39240	-	-	-	-	-	-	-	-	-	-	-	SNase
SX3_k127_4481259_1	1297865.APJD01000021_gene3068	3.163e-181	567.0	COG0671@1|root,COG0671@2|Bacteria,1PX74@1224|Proteobacteria,2TUV9@28211|Alphaproteobacteria,3JV4I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	LssY C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	LssY_C
SX3_k127_4481259_0	1230476.C207_06992	5.786e-253	782.0	COG0075@1|root,COG0075@2|Bacteria,1MWHJ@1224|Proteobacteria,2TQSN@28211|Alphaproteobacteria,3JRRY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-V	MA20_39235	-	2.6.1.44,2.6.1.45,2.6.1.51	ko:K00830	ko00250,ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00250,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map04146	M00346,M00532	R00369,R00372,R00585,R00588	RC00006,RC00008,RC00018	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_5
SX3_k127_4481259_3	1297865.APJD01000021_gene3070	4.319e-158	501.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,3JVXD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	TOBE domain	-	-	3.6.3.30	ko:K02010	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.10	-	-	ABC_tran,TOBE_2
SX3_k127_4508154_5	1297865.APJD01000006_gene4409	5.932e-91	301.0	COG1416@1|root,COG1416@2|Bacteria,1MZM7@1224|Proteobacteria,2UCT2@28211|Alphaproteobacteria,3JXSD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DsrE/DsrF-like family	-	-	-	ko:K09004	-	-	-	-	ko00000	-	-	-	DrsE
SX3_k127_4508154_4	1297865.APJD01000006_gene4410	3.176e-128	411.0	2AMQV@1|root,31CM4@2|Bacteria,1MWN3@1224|Proteobacteria,2TUEE@28211|Alphaproteobacteria,3JVIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4508154_0	1230476.C207_06309	0.0	1294.0	COG2766@1|root,COG2766@2|Bacteria,1MVW7@1224|Proteobacteria,2TTW4@28211|Alphaproteobacteria,3JRPX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	PrkA AAA domain	prkA	GO:0003674,GO:0003824,GO:0004672,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006995,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0042594,GO:0043170,GO:0043412,GO:0043562,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0140096,GO:1901564	-	ko:K07180	-	-	-	-	ko00000	-	-	-	AAA_PrkA,PrkA
SX3_k127_4508154_2	1297865.APJD01000006_gene4412	8.908e-271	834.0	COG2718@1|root,COG2718@2|Bacteria,1MWQM@1224|Proteobacteria,2TTWI@28211|Alphaproteobacteria,3JSY2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF444)	MA20_00985	-	-	ko:K09786	-	-	-	-	ko00000	-	-	-	DUF444
SX3_k127_4508154_1	1297865.APJD01000006_gene4413	0.0	1067.0	COG2719@1|root,COG2719@2|Bacteria,1MW6U@1224|Proteobacteria,2TRJG@28211|Alphaproteobacteria,3JQVD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SpoVR like protein	MA20_00990	GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716	-	ko:K06415	-	-	-	-	ko00000	-	-	-	SpoVR
SX3_k127_4508154_3	1297865.APJD01000006_gene4414	5.871e-262	807.0	COG0683@1|root,COG0683@2|Bacteria,1QDN6@1224|Proteobacteria,2U1CH@28211|Alphaproteobacteria,3JV38@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_4525444_2	1297865.APJD01000003_gene6320	0.0	1154.0	COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,1MU31@1224|Proteobacteria,2TRJF@28211|Alphaproteobacteria,3JRVT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	polA	GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576	2.7.7.7	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	-	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1
SX3_k127_4525444_10	1297865.APJD01000003_gene6321	5.183e-147	490.0	COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,2TTKG@28211|Alphaproteobacteria,3JSUX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	MA20_22740	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_4525444_5	316057.RPD_4375	3.824e-289	896.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TTSR@28211|Alphaproteobacteria,3JT13@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Domain of unknown function (DUF3369)	MA20_22735	-	-	-	-	-	-	-	-	-	-	-	DUF3369,HATPase_c,HisKA,Response_reg
SX3_k127_4525444_0	1297865.APJD01000003_gene6323	0.0	1302.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQTN@28211|Alphaproteobacteria,3JUK1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	MA20_22730	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,PAS_4,PAS_8
SX3_k127_4525444_7	1297865.APJD01000003_gene6324	5.314e-208	647.0	COG1638@1|root,COG1638@2|Bacteria,1MVHC@1224|Proteobacteria,2TRZE@28211|Alphaproteobacteria,3JR3T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_4525444_4	1297865.APJD01000003_gene6325	9.026e-292	896.0	COG1653@1|root,COG1653@2|Bacteria,1MVMW@1224|Proteobacteria,2TQKV@28211|Alphaproteobacteria,3JRS3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	ugpB	-	-	ko:K05813	ko02010,map02010	M00198	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.3	-	-	SBP_bac_8
SX3_k127_4525444_6	1297865.APJD01000003_gene6326	5.131e-215	668.0	COG3173@1|root,COG3173@2|Bacteria,1R5VZ@1224|Proteobacteria,2TVSZ@28211|Alphaproteobacteria,3JSCG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phosphotransferase enzyme family	-	-	2.7.1.119	ko:K17880	-	-	-	-	ko00000,ko01000,ko01504	-	-	-	APH
SX3_k127_4525444_3	1297865.APJD01000003_gene6327	0.0	1128.0	COG0747@1|root,COG0747@2|Bacteria,1MWR7@1224|Proteobacteria,2TS51@28211|Alphaproteobacteria,3JT3B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_22710	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5,TAT_signal
SX3_k127_4525444_8	1297865.APJD01000003_gene6328	2.662e-205	642.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TQKK@28211|Alphaproteobacteria,3JQUZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_22705	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_4525444_9	1230476.C207_02798	1.063e-183	575.0	COG1173@1|root,COG1173@2|Bacteria,1MW3R@1224|Proteobacteria,2TUCW@28211|Alphaproteobacteria,3JR9I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	MA20_22700	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_4525444_1	1297865.APJD01000003_gene6330	0.0	1174.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,3JQQ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	MA20_22695	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_4525444_12	1297865.APJD01000003_gene6331	1.736e-31	124.0	292PA@1|root,2ZQ74@2|Bacteria,1N74X@1224|Proteobacteria,2UF8C@28211|Alphaproteobacteria,3K0Y7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF4089)	MA20_22690	-	-	-	-	-	-	-	-	-	-	-	DUF4089
SX3_k127_4525444_11	1297865.APJD01000003_gene6332	9.673e-50	182.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TU3V@28211|Alphaproteobacteria,3JRDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	MA20_22685	-	3.5.1.84,6.3.5.6,6.3.5.7	ko:K02433,ko:K19837	ko00791,ko00970,ko01100,ko01120,map00791,map00970,map01100,map01120	-	R03905,R04212,R05563	RC00010,RC01287	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
SX3_k127_4535578_3	1297865.APJD01000014_gene517	8.018e-255	785.0	COG0243@1|root,COG0243@2|Bacteria,1MU6B@1224|Proteobacteria,2TTUX@28211|Alphaproteobacteria,3JUJ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family	-	-	-	-	-	-	-	-	-	-	-	-	Molybdopterin,Molydop_binding
SX3_k127_4535578_1	1297865.APJD01000014_gene518	6.775e-296	910.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2U3TT@28211|Alphaproteobacteria,3JWGC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c
SX3_k127_4535578_2	1297865.APJD01000014_gene519	1.951e-256	797.0	COG0477@1|root,COG0477@2|Bacteria,1QWJ8@1224|Proteobacteria,2TWZ2@28211|Alphaproteobacteria,3K6PY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Transmembrane secretion effector	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_4535578_5	1297865.APJD01000014_gene520	1.833e-216	677.0	COG0596@1|root,COG0596@2|Bacteria,1NU1Q@1224|Proteobacteria,2U3QC@28211|Alphaproteobacteria,3JW5F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6,Biotin_lipoyl
SX3_k127_4535578_4	1297865.APJD01000014_gene522	6.036e-237	735.0	28MT5@1|root,2ZB1G@2|Bacteria,1RC18@1224|Proteobacteria,2U40K@28211|Alphaproteobacteria,3JUHA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4535578_7	1297865.APJD01000014_gene523	2.032e-74	258.0	2CXSR@1|root,32T2I@2|Bacteria,1MZUX@1224|Proteobacteria,2U6EW@28211|Alphaproteobacteria,3JYIB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF4383
SX3_k127_4535578_0	1297865.APJD01000014_gene524	8.106e-307	942.0	COG0277@1|root,COG0277@2|Bacteria,1MV1Q@1224|Proteobacteria,2TT4Z@28211|Alphaproteobacteria,3JTJM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	ALO,FAD_binding_4
SX3_k127_4535578_6	1297865.APJD01000014_gene525	3.316e-138	440.0	2C8PG@1|root,2ZBJC@2|Bacteria,1R3DD@1224|Proteobacteria,2U326@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4535578_9	1297865.APJD01000014_gene526	9.355e-28	112.0	2BSBX@1|root,32MDS@2|Bacteria,1NBB2@1224|Proteobacteria,2UH9U@28211|Alphaproteobacteria,3K12K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4535578_8	1230476.C207_06493	2.164e-56	199.0	COG1475@1|root,COG1475@2|Bacteria,1N7YF@1224|Proteobacteria,2UG2T@28211|Alphaproteobacteria,3JXA2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	ParB-like nuclease domain	-	-	-	-	-	-	-	-	-	-	-	-	ParBc
SX3_k127_454305_16	1205680.CAKO01000007_gene4440	3.09e-22	100.0	2DIE1@1|root,302XZ@2|Bacteria,1NA4B@1224|Proteobacteria,2V0CR@28211|Alphaproteobacteria,2JXGR@204441|Rhodospirillales	204441|Rhodospirillales	S	Protein of unknown function (DUF3325)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3325
SX3_k127_454305_3	1297865.APJD01000007_gene1913	0.0	1044.0	COG3182@1|root,COG3182@2|Bacteria,1MVET@1224|Proteobacteria,2TVHW@28211|Alphaproteobacteria,3JXKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
SX3_k127_454305_14	1297865.APJD01000007_gene1912	6.092e-41	152.0	2ER7K@1|root,33IT6@2|Bacteria,1NJD4@1224|Proteobacteria,2UK4M@28211|Alphaproteobacteria,3K1QR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_454305_0	1297865.APJD01000007_gene1911	0.0	1471.0	COG4774@1|root,COG4774@2|Bacteria,1MVZD@1224|Proteobacteria,2TS4K@28211|Alphaproteobacteria,3JR1J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	siderophore receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_454305_15	1297865.APJD01000007_gene1910	2.66e-36	138.0	29ZCB@1|root,30MAY@2|Bacteria,1N6XB@1224|Proteobacteria,2UF9M@28211|Alphaproteobacteria,3K0WJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_454305_12	1297865.APJD01000007_gene1909	1.438e-90	299.0	2E4EJ@1|root,32Z9S@2|Bacteria,1RGPF@1224|Proteobacteria,2U8HF@28211|Alphaproteobacteria,3JZ91@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_454305_9	1297865.APJD01000007_gene1908	4.53e-152	484.0	COG0265@1|root,COG0265@2|Bacteria,1RBPQ@1224|Proteobacteria,2U5UY@28211|Alphaproteobacteria,3JYER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Trypsin-like peptidase domain	-	-	-	-	-	-	-	-	-	-	-	-	Trypsin_2
SX3_k127_454305_5	1297865.APJD01000007_gene1907	1.119e-207	650.0	COG0330@1|root,COG0330@2|Bacteria,1P8ZI@1224|Proteobacteria,2TTBE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	O	membrane	-	-	-	-	-	-	-	-	-	-	-	-	Band_7
SX3_k127_454305_17	644966.Tmar_0389	0.0005502	47.0	COG4877@1|root,COG4877@2|Bacteria,1VEY1@1239|Firmicutes,24VQC@186801|Clostridia	186801|Clostridia	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	RHH_5
SX3_k127_454305_13	1297865.APJD01000007_gene1905	2.373e-81	272.0	COG3152@1|root,COG3152@2|Bacteria,1NDNG@1224|Proteobacteria,2TT9F@28211|Alphaproteobacteria,3JVMI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF805)	-	-	-	-	-	-	-	-	-	-	-	-	DUF805
SX3_k127_454305_6	1297865.APJD01000007_gene1904	7.049e-200	625.0	COG0667@1|root,COG0667@2|Bacteria,1MV2Y@1224|Proteobacteria,2TSKV@28211|Alphaproteobacteria,3JU09@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldo/keto reductase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
SX3_k127_454305_1	1297865.APJD01000007_gene1903	0.0	1150.0	COG2192@1|root,COG2192@2|Bacteria,1MWBA@1224|Proteobacteria,2TV6G@28211|Alphaproteobacteria,3JR7Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	symbiont process	nolO	-	-	ko:K00612	-	-	-	-	ko00000,ko01000	-	-	-	Carbam_trans_C,Carbam_trans_N
SX3_k127_454305_7	1297865.APJD01000007_gene1902	1.419e-196	615.0	COG0501@1|root,COG0501@2|Bacteria,1MUV4@1224|Proteobacteria,2TS3N@28211|Alphaproteobacteria,3JTMB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the peptidase M48B family	htpX	-	-	ko:K03799	-	M00743	-	-	ko00000,ko00002,ko01000,ko01002	-	-	-	Peptidase_M48
SX3_k127_454305_2	1297865.APJD01000007_gene1901	0.0	1062.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JR0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_3,PAS_4,Response_reg
SX3_k127_454305_4	1297865.APJD01000007_gene1900	1.352e-281	869.0	COG2951@1|root,COG3409@1|root,COG2951@2|Bacteria,COG3409@2|Bacteria,1MUZ3@1224|Proteobacteria,2TRP0@28211|Alphaproteobacteria,3JRXG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	MA20_44755	-	-	ko:K08305	-	-	-	-	ko00000,ko01000,ko01011	-	GH103	-	PG_binding_1,SLT_2
SX3_k127_454305_11	1297865.APJD01000007_gene1899	1.365e-105	344.0	COG3812@1|root,COG3812@2|Bacteria,1RGUV@1224|Proteobacteria,2U9BA@28211|Alphaproteobacteria,3JSJ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1993)	-	-	-	ko:K09983	-	-	-	-	ko00000	-	-	-	DUF1993
SX3_k127_454305_8	1297865.APJD01000007_gene1898	5.412e-177	559.0	COG1028@1|root,COG1028@2|Bacteria,1R4BJ@1224|Proteobacteria,2U1Q1@28211|Alphaproteobacteria,3JUZ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_454305_10	1297865.APJD01000007_gene1897	1.097e-116	376.0	COG1902@1|root,COG1902@2|Bacteria,1MVIX@1224|Proteobacteria,2TT2F@28211|Alphaproteobacteria,3JT61@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	nemA	-	-	ko:K10680	ko00633,ko01120,map00633,map01120	-	R08014,R08017,R08042	RC00250	ko00000,ko00001,ko01000	-	-	-	Oxidored_FMN
SX3_k127_4563375_0	1297865.APJD01000010_gene4965	0.0	1679.0	COG4775@1|root,COG4775@2|Bacteria,1MU0D@1224|Proteobacteria,2TR7W@28211|Alphaproteobacteria,3JT8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	bamA	-	-	ko:K07277	-	-	-	-	ko00000,ko02000,ko03029	1.B.33	-	-	Bac_surface_Ag,POTRA
SX3_k127_4563375_4	1297865.APJD01000010_gene4966	9.109e-114	372.0	COG3911@1|root,COG3911@2|Bacteria,1RD7P@1224|Proteobacteria,2U76H@28211|Alphaproteobacteria,3JZ95@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_28
SX3_k127_4563375_1	1297865.APJD01000010_gene4967	5.663e-298	918.0	COG1690@1|root,COG1690@2|Bacteria,1MUHA@1224|Proteobacteria,2U2PN@28211|Alphaproteobacteria,3JVRJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	tRNA-splicing ligase RtcB	-	-	6.5.1.3	ko:K14415	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	RtcB
SX3_k127_4563375_2	1297865.APJD01000010_gene4968	1.258e-255	791.0	COG0477@1|root,COG2814@2|Bacteria,1MX2P@1224|Proteobacteria,2TUAS@28211|Alphaproteobacteria,3JQNE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_27720	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_4563375_3	1297865.APJD01000010_gene4969	9.162e-138	443.0	COG3391@1|root,COG3391@2|Bacteria,1N25Z@1224|Proteobacteria,2TUAK@28211|Alphaproteobacteria,3JUD4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PQQ-like domain	MA20_01585	-	-	-	-	-	-	-	-	-	-	-	Glu_cyclase_2,PQQ_2
SX3_k127_4563375_5	1297865.APJD01000010_gene4970	2.141e-46	167.0	COG0745@1|root,COG0745@2|Bacteria,1MX29@1224|Proteobacteria,2TV8G@28211|Alphaproteobacteria,3JR5C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	RESPONSE REGULATOR receiver	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4574823_1	1297865.APJD01000041_gene2656	0.0	1177.0	COG0457@1|root,COG0457@2|Bacteria,1MXMD@1224|Proteobacteria,2U0F2@28211|Alphaproteobacteria,3JVSC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_14,TPR_16,TPR_19
SX3_k127_4574823_4	1304878.AUGD01000027_gene1079	4.522e-117	388.0	COG1366@1|root,COG1922@1|root,COG1366@2|Bacteria,COG1922@2|Bacteria,1N1HD@1224|Proteobacteria,2TSBS@28211|Alphaproteobacteria,3JTQA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the glycosyltransferase 26 family	-	-	2.4.1.187	ko:K05946	ko05111,map05111	-	-	-	ko00000,ko00001,ko01000,ko01003	-	GT26	-	Glyco_tran_WecB,STAS_2
SX3_k127_4574823_11	288000.BBta_1008	2.335e-71	245.0	COG1045@1|root,COG1045@2|Bacteria,1RM0T@1224|Proteobacteria,2U8N8@28211|Alphaproteobacteria,3K4GZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial transferase hexapeptide (six repeats)	-	-	2.3.1.30	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	M00021	R00586	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep
SX3_k127_4574823_2	1297865.APJD01000041_gene2658	1.619e-242	749.0	COG1216@1|root,COG1216@2|Bacteria,1MYU7@1224|Proteobacteria,2TT17@28211|Alphaproteobacteria,3K6UW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_tranf_2_2,Glyco_tranf_2_3,Glyco_trans_2_3,Glyco_transf_7C,Glycos_transf_2
SX3_k127_4574823_0	1297865.APJD01000041_gene2659	0.0	1354.0	COG0451@1|root,COG0673@1|root,COG0451@2|Bacteria,COG0673@2|Bacteria,1RIHX@1224|Proteobacteria,2U9IA@28211|Alphaproteobacteria,3K1KI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	NmrA-like family	-	-	5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase,GFO_IDH_MocA
SX3_k127_4574823_9	745310.G432_08165	5.356e-79	274.0	COG2520@1|root,COG2520@2|Bacteria,1QVP0@1224|Proteobacteria,2TWIQ@28211|Alphaproteobacteria,2K7QZ@204457|Sphingomonadales	204457|Sphingomonadales	J	Methyltransferase FkbM domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_21
SX3_k127_4574823_10	211165.AJLN01000135_gene5739	7.749e-73	261.0	COG0438@1|root,COG0438@2|Bacteria,1GJQ1@1117|Cyanobacteria,1JJE6@1189|Stigonemataceae	1117|Cyanobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_1
SX3_k127_4574823_7	690585.JNNU01000015_gene251	1.071e-89	306.0	COG1835@1|root,COG1835@2|Bacteria,1Q1KG@1224|Proteobacteria,2UGNT@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_4574823_8	1030157.AFMP01000051_gene313	1.571e-85	297.0	COG1835@1|root,COG1835@2|Bacteria	2|Bacteria	I	transferase activity, transferring acyl groups other than amino-acyl groups	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_4574823_3	1042209.HK44_003295	1.67e-127	418.0	COG0438@1|root,COG0438@2|Bacteria,1RAXB@1224|Proteobacteria,1S43C@1236|Gammaproteobacteria	1236|Gammaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_1
SX3_k127_4574823_5	1304878.AUGD01000027_gene1073	2.977e-108	366.0	COG2244@1|root,COG2244@2|Bacteria,1MUMD@1224|Proteobacteria,2TTZ8@28211|Alphaproteobacteria,3K0DH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polysaccharide biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt_3
SX3_k127_4574823_6	1304878.AUGD01000027_gene1067	7.245e-107	357.0	COG3307@1|root,COG3307@2|Bacteria,1MV4S@1224|Proteobacteria,2TV8W@28211|Alphaproteobacteria,3K353@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	-O-antigen	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4594045_9	1297865.APJD01000006_gene4448	1.306e-132	422.0	COG0515@1|root,COG0631@1|root,COG0515@2|Bacteria,COG0631@2|Bacteria,1MV1P@1224|Proteobacteria,2TQTS@28211|Alphaproteobacteria,3JQUJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KLT	Serine/threonine phosphatases, family 2C, catalytic domain	MA20_17085	-	-	-	-	-	-	-	-	-	-	-	PP2C_2,Pkinase
SX3_k127_4594045_7	1297865.APJD01000006_gene4449	2.356e-155	493.0	COG0725@1|root,COG0725@2|Bacteria,1PA2T@1224|Proteobacteria,2U1JI@28211|Alphaproteobacteria,3JUZJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial extracellular solute-binding protein	-	-	5.3.3.7	ko:K02020,ko:K22003	ko00660,ko02010,map00660,map02010	M00189	R02244	RC00668	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.8	-	-	SBP_bac_11
SX3_k127_4594045_1	1297865.APJD01000006_gene4450	2.572e-275	847.0	COG4553@1|root,COG4553@2|Bacteria,1MVUH@1224|Proteobacteria,2TQXW@28211|Alphaproteobacteria,3JV2J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	PHB de-polymerase C-terminus	MA20_01245	-	3.1.1.75	ko:K05973	ko00650,map00650	-	R05118	-	ko00000,ko00001,ko01000	-	-	-	PHB_depo_C
SX3_k127_4594045_8	1297865.APJD01000006_gene4451	7.2e-143	453.0	COG0625@1|root,COG0625@2|Bacteria,1NF66@1224|Proteobacteria,2TVE4@28211|Alphaproteobacteria,3JRJ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	MA20_01250	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N_2,GST_N_3
SX3_k127_4594045_10	1297865.APJD01000006_gene4452	7.97e-96	315.0	COG0662@1|root,COG0662@2|Bacteria,1RFQ6@1224|Proteobacteria,2U4AV@28211|Alphaproteobacteria,3JWI4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	AraC-like ligand binding domain	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,Cupin_2
SX3_k127_4594045_12	1297865.APJD01000006_gene4453	3.506e-44	162.0	2ERZB@1|root,33JIF@2|Bacteria,1N1EU@1224|Proteobacteria,2UD07@28211|Alphaproteobacteria,3K01K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4594045_11	1297865.APJD01000006_gene4454	6.883e-69	234.0	2A8W6@1|root,30XZI@2|Bacteria,1RHFY@1224|Proteobacteria,2U9DG@28211|Alphaproteobacteria,3JZF7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4594045_2	1297865.APJD01000006_gene4455	3.028e-244	755.0	COG4948@1|root,COG4948@2|Bacteria,1MW5B@1224|Proteobacteria,2UNXP@28211|Alphaproteobacteria,3JSCB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	MA20_01265	-	4.2.1.6	ko:K01684	ko00052,ko01100,ko01120,map00052,map01100,map01120	M00552	R03033	RC00543	ko00000,ko00001,ko00002,ko01000	-	-	-	MR_MLE_C,MR_MLE_N
SX3_k127_4594045_0	1297865.APJD01000006_gene4456	1.1e-279	860.0	COG0683@1|root,COG0683@2|Bacteria,1MV1Z@1224|Proteobacteria,2TRTD@28211|Alphaproteobacteria,3JSR4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_4594045_4	1297865.APJD01000006_gene4457	4.512e-187	584.0	COG2207@1|root,COG3708@1|root,COG2207@2|Bacteria,COG3708@2|Bacteria,1MWTF@1224|Proteobacteria,2TTWC@28211|Alphaproteobacteria,3JRNX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial transcription activator, effector binding domain	MA20_01270	-	-	ko:K13652,ko:K13653	-	-	-	-	ko00000,ko03000	-	-	-	GyrI-like,HTH_18
SX3_k127_4594045_16	1230476.C207_04688	1.316e-07	53.0	COG0621@1|root,COG0621@2|Bacteria,1MUCS@1224|Proteobacteria,2TRYD@28211|Alphaproteobacteria,3JTP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	MiaB-like tRNA modifying enzyme	mtaB	GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035598,GO:0035600,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050497,GO:0071704,GO:0090304,GO:1901360	2.8.4.5	ko:K18707	-	-	R10649	RC00003,RC03221	ko00000,ko01000,ko03016	-	-	-	Radical_SAM,UPF0004
SX3_k127_4594045_3	398525.KB900701_gene6785	7.097e-205	655.0	COG0142@1|root,COG0142@2|Bacteria,1MUK6@1224|Proteobacteria,2TSDZ@28211|Alphaproteobacteria,3JRJF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the FPP GGPP synthase family	ispB	GO:0003674,GO:0003824,GO:0004659,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009108,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0042180,GO:0042181,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663	2.5.1.90	ko:K02523	ko00900,ko01110,map00900,map01110	-	R09248	RC00279	ko00000,ko00001,ko01000,ko01006	-	-	-	polyprenyl_synt
SX3_k127_4594045_13	1230476.C207_05686	2.103e-38	144.0	2E3KZ@1|root,32YJ8@2|Bacteria,1N7A7@1224|Proteobacteria,2UFMR@28211|Alphaproteobacteria,3K0FM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative prokaryotic signal transducing protein	MA20_42240	-	-	-	-	-	-	-	-	-	-	-	DUF2007
SX3_k127_4594045_6	1297865.APJD01000006_gene4460	8.862e-166	523.0	COG4123@1|root,COG4123@2|Bacteria,1MXEQ@1224|Proteobacteria,2TUBR@28211|Alphaproteobacteria,3JWJT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Methyltransferase small domain	yfiC	-	2.1.1.223	ko:K15460	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	MTS
SX3_k127_4594045_15	1297865.APJD01000006_gene4461	1.763e-09	64.0	2AH17@1|root,317AA@2|Bacteria,1NJF6@1224|Proteobacteria,2UM4F@28211|Alphaproteobacteria,3K222@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4594045_5	1230476.C207_05683	2.972e-178	561.0	COG0616@1|root,COG0616@2|Bacteria,1MUXE@1224|Proteobacteria,2TQZP@28211|Alphaproteobacteria,3JRZA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OU	Peptidase family S49	sohB	-	-	ko:K04773,ko:K04774	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_S49
SX3_k127_4609983_6	1297865.APJD01000035_gene5452	5.635e-30	118.0	COG3304@1|root,COG3304@2|Bacteria,1RA96@1224|Proteobacteria,2U742@28211|Alphaproteobacteria,3JYSW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Inner membrane component domain	MA20_16325	-	-	-	-	-	-	-	-	-	-	-	YccF
SX3_k127_4609983_5	1297865.APJD01000035_gene5451	6.006e-131	419.0	COG1309@1|root,COG1309@2|Bacteria,1NDME@1224|Proteobacteria,2U6XJ@28211|Alphaproteobacteria,3K296@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Domain of unknown function (DUF1956)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1956,TetR_N
SX3_k127_4609983_0	1297865.APJD01000035_gene5450	1.526e-283	872.0	2DBC5@1|root,2Z8BV@2|Bacteria,1QVGS@1224|Proteobacteria,2TS2Y@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2236)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2236
SX3_k127_4609983_2	1297865.APJD01000035_gene5449	1.808e-231	716.0	COG1073@1|root,COG1073@2|Bacteria,1MY4W@1224|Proteobacteria,2TVN5@28211|Alphaproteobacteria,3JVJS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	alpha beta	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4609983_1	1297865.APJD01000035_gene5448	9.328e-239	739.0	COG2141@1|root,COG2141@2|Bacteria,1MVMB@1224|Proteobacteria,2U1EV@28211|Alphaproteobacteria,3JW4H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_4609983_7	1382303.JPOM01000001_gene449	5.334e-08	55.0	COG1961@1|root,COG1961@2|Bacteria,1NNP7@1224|Proteobacteria,2UMPM@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	COG1961 Site-specific recombinases, DNA invertase Pin homologs	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4609983_4	883078.HMPREF9695_03848	1.175e-144	459.0	COG0457@1|root,COG0457@2|Bacteria,1NG0U@1224|Proteobacteria,2U0YA@28211|Alphaproteobacteria,3K5Y0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	TPR_1,TPR_11,TPR_2,TPR_8
SX3_k127_4609983_3	883078.HMPREF9695_03849	5.03e-216	671.0	COG0642@1|root,COG2205@2|Bacteria,1QTVU@1224|Proteobacteria,2TW3R@28211|Alphaproteobacteria,3K314@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c
SX3_k127_463148_1	1297865.APJD01000011_gene6833	0.0	1439.0	COG5000@1|root,COG5001@1|root,COG5000@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JTV0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	4HB_MCP_1,EAL,GGDEF,HAMP,MHYT,PAS,PAS_3,PAS_7,PAS_8,dCache_1
SX3_k127_463148_6	224911.27352803	2.914e-05	51.0	COG1173@1|root,COG1173@2|Bacteria,1MWP1@1224|Proteobacteria,2TSUG@28211|Alphaproteobacteria,3JR90@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_13270	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_463148_4	1297865.APJD01000011_gene6834	2.869e-110	358.0	COG1595@1|root,COG1595@2|Bacteria,1MZMC@1224|Proteobacteria,2TUUZ@28211|Alphaproteobacteria,3JSQZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	sigH	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_463148_5	398525.KB900701_gene2330	5.888e-35	134.0	28XZJ@1|root,2ZJVB@2|Bacteria,1N8JP@1224|Proteobacteria,2UHZC@28211|Alphaproteobacteria,3K1HC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	QU41_02790	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_463148_3	1297865.APJD01000011_gene6836	2.389e-166	527.0	COG0784@1|root,COG0784@2|Bacteria,1MX3Y@1224|Proteobacteria,2TT2R@28211|Alphaproteobacteria,3JTEE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	phyR	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Sigma70_r4_2
SX3_k127_463148_0	1297865.APJD01000011_gene6837	0.0	2660.0	COG0745@1|root,COG2203@1|root,COG4191@1|root,COG5002@1|root,COG0745@2|Bacteria,COG2203@2|Bacteria,COG4191@2|Bacteria,COG5002@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JR0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	CHASE3,GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_4,PAS_9,Response_reg
SX3_k127_463148_2	1297865.APJD01000011_gene6838	1.42e-183	574.0	COG2124@1|root,COG2124@2|Bacteria,1MY2E@1224|Proteobacteria,2TTFN@28211|Alphaproteobacteria,3JRSU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_4633643_2	1297865.APJD01000003_gene6504	2.272e-164	517.0	COG1402@1|root,COG1402@2|Bacteria,1MXR9@1224|Proteobacteria,2TUFR@28211|Alphaproteobacteria,3JUKV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Creatinine amidohydrolase	-	-	3.5.2.10	ko:K01470	ko00330,map00330	-	R01884	RC00615	ko00000,ko00001,ko01000	-	-	-	Creatininase
SX3_k127_4633643_4	1297865.APJD01000003_gene6505	2.224e-98	329.0	COG1853@1|root,COG1853@2|Bacteria,1RGYM@1224|Proteobacteria,2UCHI@28211|Alphaproteobacteria,3JRDM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Flavin reductase like domain	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
SX3_k127_4633643_0	1297865.APJD01000003_gene6506	9.582e-268	824.0	COG0683@1|root,COG0683@2|Bacteria,1MV1Z@1224|Proteobacteria,2TRTD@28211|Alphaproteobacteria,3JS33@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_4633643_6	1037409.BJ6T_14340	1.725e-12	71.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,2TRIY@28211|Alphaproteobacteria,3JUGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Resolvase	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
SX3_k127_4633643_3	1297865.APJD01000004_gene5407	6.404e-103	340.0	COG1495@1|root,COG1495@2|Bacteria,1N89I@1224|Proteobacteria,2UF49@28211|Alphaproteobacteria,3JUXI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Disulfide bond formation protein DsbB	dsbB	-	-	ko:K03611	-	-	-	-	ko00000,ko03110	5.A.2.1	-	-	DsbB
SX3_k127_4633643_1	1297865.APJD01000004_gene5406	7.506e-212	660.0	COG3180@1|root,COG3180@2|Bacteria,1MUFS@1224|Proteobacteria,2TUUX@28211|Alphaproteobacteria,3JRDZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Transition state regulatory protein AbrB	MA20_20750	-	-	ko:K07120	-	-	-	-	ko00000	-	-	-	AbrB
SX3_k127_4633643_5	1297865.APJD01000004_gene5405	2.502e-28	114.0	2ACMA@1|root,3127Q@2|Bacteria,1N34P@1224|Proteobacteria,2UG1Z@28211|Alphaproteobacteria,3K0GT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	psiF repeat	-	-	-	-	-	-	-	-	-	-	-	-	PsiF_repeat
SX3_k127_4634129_8	1230476.C207_04089	1.189e-40	150.0	COG2124@1|root,COG2124@2|Bacteria,1MV75@1224|Proteobacteria,2TSV7@28211|Alphaproteobacteria,3JQV5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	MA20_25190	-	1.14.14.1	ko:K00493	ko00071,ko00380,ko00627,ko01120,map00071,map00380,map00627,map01120	-	R03629,R04121,R05259	RC00046,RC01311	ko00000,ko00001,ko01000	-	-	-	p450
SX3_k127_4634129_0	1297865.APJD01000019_gene3186	5.592e-309	947.0	COG2114@1|root,COG2114@2|Bacteria,1NAJG@1224|Proteobacteria,2TSVT@28211|Alphaproteobacteria,3JS1G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	cyaH	-	-	-	-	-	-	-	-	-	-	-	Guanylate_cyc
SX3_k127_4634129_5	1297865.APJD01000019_gene3187	2.84e-103	337.0	COG4103@1|root,COG4103@2|Bacteria,1N6YZ@1224|Proteobacteria,2U93G@28211|Alphaproteobacteria,3JUGW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tellurite resistance protein TerB	-	-	-	-	-	-	-	-	-	-	-	-	TerB
SX3_k127_4634129_4	1297865.APJD01000019_gene3188	1.128e-159	504.0	COG0300@1|root,COG0300@2|Bacteria,1RG9T@1224|Proteobacteria,2TW0V@28211|Alphaproteobacteria,3JS8Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_25205	-	-	ko:K07124	-	-	-	-	ko00000	-	-	-	adh_short
SX3_k127_4634129_2	1297865.APJD01000019_gene3189	7.65e-180	565.0	COG0518@1|root,COG0518@2|Bacteria,1MUDH@1224|Proteobacteria,2TU60@28211|Alphaproteobacteria,3JRGP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Glutamine amidotransferase class-I	guaA2	-	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase
SX3_k127_4634129_3	1297865.APJD01000019_gene3190	1.358e-173	549.0	COG1024@1|root,COG1024@2|Bacteria,1MXZ2@1224|Proteobacteria,2TRQ8@28211|Alphaproteobacteria,3JVYF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase	MA20_25215	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_4634129_7	1297865.APJD01000019_gene3192	9.286e-51	181.0	COG0762@1|root,COG0762@2|Bacteria,1N73Q@1224|Proteobacteria,2UFZR@28211|Alphaproteobacteria,3JZGE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YGGT family	MA20_25225	-	-	ko:K02221	-	-	-	-	ko00000,ko02044	-	-	-	YGGT
SX3_k127_4634129_6	1297865.APJD01000019_gene3193	2.359e-62	215.0	COG1872@1|root,COG1872@2|Bacteria,1N6V2@1224|Proteobacteria,2UF67@28211|Alphaproteobacteria,3JZCX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0235 family	MA20_25230	-	-	ko:K09131	-	-	-	-	ko00000	-	-	-	DUF167
SX3_k127_4634129_1	1297865.APJD01000019_gene3194	2.919e-185	580.0	COG0190@1|root,COG0190@2|Bacteria,1MWU4@1224|Proteobacteria,2TRZZ@28211|Alphaproteobacteria,3JQPP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	folD	GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114	1.5.1.5,3.5.4.9	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	M00140,M00377	R01220,R01655	RC00202,RC00578	ko00000,ko00001,ko00002,ko01000	-	-	-	THF_DHG_CYH,THF_DHG_CYH_C
SX3_k127_4635128_4	1297865.APJD01000003_gene6421	2.484e-77	261.0	2C10Y@1|root,33VU3@2|Bacteria,1RFVX@1224|Proteobacteria,2U8EA@28211|Alphaproteobacteria,3K2DH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4635128_0	1297865.APJD01000003_gene6422	0.0	1647.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JT05@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,PAS_3,PAS_9,Response_reg,sCache_2
SX3_k127_4635128_3	1297865.APJD01000003_gene6423	1.267e-95	312.0	2A75H@1|root,30W1C@2|Bacteria,1RCP6@1224|Proteobacteria,2U6YB@28211|Alphaproteobacteria,3JYP0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4635128_1	1297865.APJD01000003_gene6424	3.772e-247	764.0	COG4249@1|root,COG4249@2|Bacteria,1MXFD@1224|Proteobacteria,2TRW5@28211|Alphaproteobacteria,3JUHG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14
SX3_k127_4635128_2	1297865.APJD01000003_gene6425	2.924e-213	668.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JR5S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	MA20_00470	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_4662171_7	1297865.APJD01000006_gene4488	5.773e-77	259.0	COG0251@1|root,COG0251@2|Bacteria,1REJQ@1224|Proteobacteria,2U70D@28211|Alphaproteobacteria,3JYTI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	MA20_01450	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
SX3_k127_4662171_5	172088.AUGA01000004_gene4031	5.431e-93	314.0	COG2391@1|root,COG2391@2|Bacteria,1MZC0@1224|Proteobacteria,2U99K@28211|Alphaproteobacteria,3JYHS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	transporter component	-	-	-	ko:K07112	-	-	-	-	ko00000	-	-	-	-
SX3_k127_4662171_9	172088.AUGA01000004_gene4031	5.875e-57	201.0	COG2391@1|root,COG2391@2|Bacteria,1MZC0@1224|Proteobacteria,2U99K@28211|Alphaproteobacteria,3JYHS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	transporter component	-	-	-	ko:K07112	-	-	-	-	ko00000	-	-	-	-
SX3_k127_4662171_8	1297865.APJD01000006_gene4491	1.304e-72	262.0	2E560@1|root,30VJN@2|Bacteria,1RA97@1224|Proteobacteria,2U6P4@28211|Alphaproteobacteria,3JYEN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4662171_3	1297865.APJD01000006_gene4492	2.544e-124	402.0	COG3663@1|root,COG3663@2|Bacteria,1RAVZ@1224|Proteobacteria,2UDH2@28211|Alphaproteobacteria,3JVC8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Uracil DNA glycosylase superfamily	mug	-	3.2.2.28	ko:K03649	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UDG
SX3_k127_4662171_4	1297865.APJD01000006_gene4493	1.303e-113	368.0	COG4339@1|root,COG4339@2|Bacteria,1MZ9X@1224|Proteobacteria,2U3NC@28211|Alphaproteobacteria,3JXII@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein conserved in bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4662171_6	1297865.APJD01000006_gene4494	1.158e-78	278.0	2A71R@1|root,30VX3@2|Bacteria,1RC87@1224|Proteobacteria,2U66C@28211|Alphaproteobacteria,3JYD0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4662171_2	1297865.APJD01000006_gene4495	3.021e-143	455.0	COG0344@1|root,COG0344@2|Bacteria,1NKK8@1224|Proteobacteria,2TQXK@28211|Alphaproteobacteria,3JVY6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP	-	-	2.3.1.15	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	G3P_acyltransf
SX3_k127_4662171_0	1297865.APJD01000006_gene4496	0.0	1218.0	COG2072@1|root,COG2072@2|Bacteria,1MY00@1224|Proteobacteria,2U4J4@28211|Alphaproteobacteria,3JWBN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	-	-	-	-	-	-	-	-	-	-	-	-	FMO-like
SX3_k127_4662171_1	1297865.APJD01000006_gene4497	6.831e-234	723.0	COG0422@1|root,COG0422@2|Bacteria,1MUVV@1224|Proteobacteria,2TS0S@28211|Alphaproteobacteria,3JUK5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction	thiC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.1.99.17	ko:K03147	ko00730,ko01100,map00730,map01100	M00127	R03472	RC03251,RC03252	ko00000,ko00001,ko00002,ko01000	-	-	-	ThiC-associated,ThiC_Rad_SAM
SX3_k127_4666055_2	1297865.APJD01000039_gene1730	2.045e-203	635.0	COG0037@1|root,COG0037@2|Bacteria,1MU85@1224|Proteobacteria,2TRK1@28211|Alphaproteobacteria,3JS5P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine	tilS	-	6.3.4.19	ko:K04075	-	-	R09597	RC02633,RC02634	ko00000,ko01000,ko03016	-	-	-	ATP_bind_3
SX3_k127_4666055_8	1297865.APJD01000039_gene1729	2.515e-60	209.0	COG1729@1|root,COG1729@2|Bacteria,1MUSV@1224|Proteobacteria,2U6ZQ@28211|Alphaproteobacteria,3JSGB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division	cpoB	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_6,TolA_bind_tri
SX3_k127_4666055_5	1297865.APJD01000039_gene1729	1.396e-122	397.0	COG1729@1|root,COG1729@2|Bacteria,1MUSV@1224|Proteobacteria,2U6ZQ@28211|Alphaproteobacteria,3JSGB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division	cpoB	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_6,TolA_bind_tri
SX3_k127_4666055_6	1297865.APJD01000039_gene1728	2.069e-97	321.0	COG2885@1|root,COG2885@2|Bacteria,1MZTV@1224|Proteobacteria,2U758@28211|Alphaproteobacteria,3JUHJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the ompA family	pal	-	-	ko:K03640	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	OmpA
SX3_k127_4666055_4	1297865.APJD01000039_gene1727	3.458e-159	502.0	COG3916@1|root,COG3916@2|Bacteria,1R6MX@1224|Proteobacteria,2TR6Y@28211|Alphaproteobacteria,3JT6K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	QT	Acyl-homoserine-lactone synthase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4666055_0	1297865.APJD01000039_gene1726	0.0	1515.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JRMT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,PAS_7
SX3_k127_4666055_1	1297865.APJD01000039_gene1725	4.203e-302	927.0	COG0823@1|root,COG0823@2|Bacteria,1MV09@1224|Proteobacteria,2TR03@28211|Alphaproteobacteria,3JTJA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Involved in the TonB-independent uptake of proteins	tolB	-	-	ko:K03641	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	PD40,TolB_N
SX3_k127_4666055_3	1297865.APJD01000039_gene1724	4.964e-190	596.0	COG3170@1|root,COG3170@2|Bacteria,1QW53@1224|Proteobacteria,2TWS6@28211|Alphaproteobacteria,3JTDJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	TIGRFAM protein TolA	MA20_04000	-	-	ko:K03646	-	-	-	-	ko00000,ko02000	2.C.1.2	-	-	-
SX3_k127_4666055_7	1297865.APJD01000039_gene1723	5.379e-92	305.0	COG0848@1|root,COG0848@2|Bacteria,1MZ6M@1224|Proteobacteria,2UA46@28211|Alphaproteobacteria,3JSEY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PFAM Biopolymer transport protein ExbD TolR	tolR	-	-	ko:K03559,ko:K03560	-	-	-	-	ko00000,ko02000	1.A.30.2.1,1.A.30.2.2	-	-	ExbD
SX3_k127_4666055_9	398525.KB900701_gene360	9.223e-23	97.0	COG0811@1|root,COG0811@2|Bacteria,1NCWW@1224|Proteobacteria,2TQXQ@28211|Alphaproteobacteria,3JUM9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	MotA/TolQ/ExbB proton channel family	tolQ	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944	-	ko:K03562	ko01120,map01120	-	-	-	ko00000,ko02000	1.A.30.2.2	-	-	MotA_ExbB
SX3_k127_4687551_4	1297865.APJD01000007_gene2323	1.026e-194	608.0	COG1376@1|root,COG1376@2|Bacteria,1MX14@1224|Proteobacteria,2TS68@28211|Alphaproteobacteria,3JU1F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_4687551_3	1297865.APJD01000007_gene2324	9.64e-226	701.0	COG0500@1|root,COG0500@2|Bacteria,1N3PV@1224|Proteobacteria,2TVNH@28211|Alphaproteobacteria,3JUBW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	O-methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_31
SX3_k127_4687551_1	1230476.C207_06190	1.596e-305	942.0	COG0297@1|root,COG0297@2|Bacteria,1MUGM@1224|Proteobacteria,2TT73@28211|Alphaproteobacteria,3JS05@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Synthesizes alpha-1,4-glucan chains using ADP-glucose	MA20_17260	GO:0003674,GO:0003824,GO:0016740,GO:0016757	2.4.1.21	ko:K00703	ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026	M00565	R02421	RC00005	ko00000,ko00001,ko00002,ko01000,ko01003	-	GT5	-	Glyco_transf_5,Glycos_transf_1
SX3_k127_4687551_2	1230476.C207_06191	1.368e-259	803.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TRB6@28211|Alphaproteobacteria,3JS4V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_17255	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_4687551_0	1230476.C207_06192	0.0	1032.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TU1J@28211|Alphaproteobacteria,3JW7B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	MA20_17250	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_4687551_5	1297865.APJD01000007_gene2328	2.961e-166	524.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TUQ6@28211|Alphaproteobacteria,3JVGN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_17245	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_4699384_6	1297865.APJD01000009_gene2856	6.484e-212	658.0	COG0323@1|root,COG0323@2|Bacteria,1MV61@1224|Proteobacteria,2TR2M@28211|Alphaproteobacteria,3JT55@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	mutL	GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391	-	ko:K03572	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	DNA_mis_repair,HATPase_c_3,MutL_C
SX3_k127_4699384_12	1297865.APJD01000009_gene2857	9.671e-126	403.0	2F765@1|root,32ICW@2|Bacteria,1NRCD@1224|Proteobacteria,2UNS7@28211|Alphaproteobacteria,3K2NY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4699384_14	1297865.APJD01000009_gene2858	3.7e-113	365.0	COG0742@1|root,COG0742@2|Bacteria,1MXKW@1224|Proteobacteria,2U70Y@28211|Alphaproteobacteria,3JR5U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Conserved hypothetical protein 95	rsmD	-	2.1.1.171	ko:K08316	-	-	R07234	RC00003	ko00000,ko01000,ko03009	-	-	-	Cons_hypoth95
SX3_k127_4699384_0	1297865.APJD01000009_gene2859	0.0	1345.0	COG1187@1|root,COG1187@2|Bacteria,1MUCE@1224|Proteobacteria,2TQP2@28211|Alphaproteobacteria,3JUYZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the pseudouridine synthase RsuA family	rluB	-	5.4.99.22	ko:K06178	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
SX3_k127_4699384_16	1230476.C207_03500	4.26e-91	302.0	COG0590@1|root,COG0590@2|Bacteria,1RGU0@1224|Proteobacteria,2U77Q@28211|Alphaproteobacteria,3JY4W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	FJ	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)	tadA	-	3.5.4.1,3.5.4.3,3.5.4.33	ko:K01485,ko:K01487,ko:K11991	ko00230,ko00240,ko00330,ko01100,map00230,map00240,map00330,map01100	-	R00974,R01411,R01676,R02922,R10223	RC00074,RC00204,RC00477,RC00514,RC00809	ko00000,ko00001,ko01000,ko03016	-	-	-	MafB19-deam,dCMP_cyt_deam_1
SX3_k127_4699384_7	1297865.APJD01000009_gene2861	5.61e-208	646.0	COG0596@1|root,COG0596@2|Bacteria,1MUVB@1224|Proteobacteria,2TREP@28211|Alphaproteobacteria,3JSFP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	MA20_05720	-	3.8.1.3	ko:K01561	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05287	RC00697	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
SX3_k127_4699384_4	1297865.APJD01000009_gene2862	4.301e-271	837.0	COG1960@1|root,COG1960@2|Bacteria,1MU2V@1224|Proteobacteria,2TSK3@28211|Alphaproteobacteria,3JVKG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_4699384_2	1297865.APJD01000009_gene2863	2.611e-283	872.0	COG0151@1|root,COG0151@2|Bacteria,1MUAH@1224|Proteobacteria,2TQR5@28211|Alphaproteobacteria,3JSI5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the GARS family	purD	-	6.3.4.13	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	M00048	R04144	RC00090,RC00166	ko00000,ko00001,ko00002,ko01000	-	-	-	GARS_A,GARS_C,GARS_N
SX3_k127_4699384_17	1297865.APJD01000009_gene2864	9.011e-55	192.0	COG1846@1|root,COG1846@2|Bacteria,1RJ4D@1224|Proteobacteria,2U9KA@28211|Alphaproteobacteria,3JZG6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Winged helix DNA-binding domain	MA20_05735	-	-	-	-	-	-	-	-	-	-	-	HTH_34
SX3_k127_4699384_13	1297865.APJD01000009_gene2865	3.42e-113	366.0	2ES6B@1|root,33JR3@2|Bacteria,1R6RW@1224|Proteobacteria,2U2FS@28211|Alphaproteobacteria,3JX6M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4699384_15	1297865.APJD01000009_gene2866	5.407e-110	356.0	2A530@1|root,30TRF@2|Bacteria,1R8JW@1224|Proteobacteria,2U074@28211|Alphaproteobacteria,3JR00@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted membrane protein (DUF2306)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2306
SX3_k127_4699384_1	1297865.APJD01000009_gene2867	0.0	1036.0	COG1570@1|root,COG1570@2|Bacteria,1MUA4@1224|Proteobacteria,2TR1R@28211|Alphaproteobacteria,3JR19@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	xseA	-	3.1.11.6	ko:K03601	ko03430,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	Exonuc_VII_L,tRNA_anti_2
SX3_k127_4699384_20	1304878.AUGD01000018_gene1293	0.0007936	44.0	29ZK8@1|root,30MKM@2|Bacteria,1RF9T@1224|Proteobacteria,2U8EN@28211|Alphaproteobacteria,3JYSZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4699384_9	1297865.APJD01000009_gene2868	1.373e-175	554.0	COG0412@1|root,COG0412@2|Bacteria,1R5J6@1224|Proteobacteria,2UE6V@28211|Alphaproteobacteria,3JVDW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Dienelactone hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	DLH,Peptidase_S9
SX3_k127_4699384_19	1297865.APJD01000009_gene2869	8.332e-44	160.0	COG3908@1|root,COG3908@2|Bacteria,1N7PA@1224|Proteobacteria,2UFTN@28211|Alphaproteobacteria,3K02P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2093)	MA20_05765	-	-	-	-	-	-	-	-	-	-	-	DUF2093
SX3_k127_4699384_8	1297865.APJD01000009_gene2870	3.245e-203	635.0	COG1663@1|root,COG1663@2|Bacteria,1MU8G@1224|Proteobacteria,2TTZ4@28211|Alphaproteobacteria,3JS77@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA)	lpxK	-	2.7.1.130	ko:K00912	ko00540,ko01100,map00540,map01100	M00060	R04657	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	LpxK
SX3_k127_4699384_3	1297865.APJD01000009_gene2871	4.496e-275	849.0	COG1519@1|root,COG1519@2|Bacteria,1MU9F@1224|Proteobacteria,2TS37@28211|Alphaproteobacteria,3JTXY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)	kdtA	-	2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15	ko:K02527	ko00540,ko01100,map00540,map01100	M00060,M00080	R04658,R05074,R09763	RC00009,RC00077,RC00247	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT30	-	Glycos_transf_N
SX3_k127_4699384_10	1297865.APJD01000009_gene2872	4.279e-151	481.0	COG2121@1|root,COG2121@2|Bacteria,1MZID@1224|Proteobacteria,2TSGQ@28211|Alphaproteobacteria,3JT7J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF374)	MA20_05800	-	-	ko:K09778	-	-	-	-	ko00000	-	-	-	DUF374
SX3_k127_4699384_18	1230476.C207_03487	6.896e-49	175.0	COG0483@1|root,COG0483@2|Bacteria,1N7D7@1224|Proteobacteria,2UF6T@28211|Alphaproteobacteria,3K0ED@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Domain of unknown function (DUF4170)	MA20_05805	-	-	-	-	-	-	-	-	-	-	-	DUF4170
SX3_k127_4699384_11	1380355.JNIJ01000015_gene5855	3.437e-128	413.0	COG0483@1|root,COG0483@2|Bacteria,1MV4W@1224|Proteobacteria,2TV4R@28211|Alphaproteobacteria,3JRF8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Inositol monophosphatase	suhB2	-	3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
SX3_k127_4699384_5	1297865.APJD01000009_gene2875	1.058e-247	765.0	COG0312@1|root,COG0312@2|Bacteria,1MUVW@1224|Proteobacteria,2TSAV@28211|Alphaproteobacteria,3JR0G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative modulator of DNA gyrase	pmbA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564	-	ko:K03592	-	-	-	-	ko00000,ko01002	-	-	-	PmbA_TldD
SX3_k127_4700916_0	1297865.APJD01000006_gene4702	0.0	1738.0	COG2114@1|root,COG3899@1|root,COG3903@1|root,COG2114@2|Bacteria,COG3899@2|Bacteria,COG3903@2|Bacteria,1MUDT@1224|Proteobacteria,2TQVN@28211|Alphaproteobacteria,3JTQ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylate and Guanylate cyclase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_16,Guanylate_cyc,TPR_12,TPR_4
SX3_k127_4700916_24	1297865.APJD01000006_gene4703	4.549e-152	482.0	COG0223@1|root,COG0223@2|Bacteria,1R6XR@1224|Proteobacteria,2TTKX@28211|Alphaproteobacteria,3JUUZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	-	-	-	-	-	-	-	-	-	-	-	-	Formyl_trans_N
SX3_k127_4700916_8	1297865.APJD01000006_gene4704	2.738e-266	823.0	2ECBC@1|root,3369Q@2|Bacteria,1QWJC@1224|Proteobacteria,2TWZC@28211|Alphaproteobacteria,3K6Q6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_2	1297865.APJD01000006_gene4705	0.0	1510.0	COG5610@1|root,COG5610@2|Bacteria,1Q4T5@1224|Proteobacteria,2U1E1@28211|Alphaproteobacteria,3JWHF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	HAD_2,Hydrolase_like
SX3_k127_4700916_27	1297865.APJD01000006_gene4706	6.853e-139	443.0	COG1595@1|root,COG1595@2|Bacteria,1MX7T@1224|Proteobacteria,2U5A1@28211|Alphaproteobacteria,3JSQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Sigma-70, region 4	sigW	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_4700916_26	1297865.APJD01000006_gene4707	4.617e-142	456.0	COG1344@1|root,COG1344@2|Bacteria,1MV1N@1224|Proteobacteria,2TT8X@28211|Alphaproteobacteria,3JVFK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	-	-	-	ko:K02406	ko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_C,Flagellin_N
SX3_k127_4700916_6	1297865.APJD01000006_gene4709	7.803e-306	944.0	COG1345@1|root,COG1345@2|Bacteria,1MUVP@1224|Proteobacteria,2TQNV@28211|Alphaproteobacteria,3JWTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end	fliD	-	-	ko:K02407	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_IN,FliD_C,FliD_N
SX3_k127_4700916_37	1297865.APJD01000006_gene4710	2.09e-91	301.0	COG1516@1|root,COG1516@2|Bacteria,1RB93@1224|Proteobacteria,2U6X5@28211|Alphaproteobacteria,3JY79@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellar protein FliS	fliS	-	-	ko:K02422	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FliS
SX3_k127_4700916_40	1297865.APJD01000006_gene4711	1.428e-73	250.0	2EPJT@1|root,33H6D@2|Bacteria,1MZYQ@1224|Proteobacteria,2UBU1@28211|Alphaproteobacteria,3K0EM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_34	1297865.APJD01000006_gene4712	6.41e-109	357.0	COG1843@1|root,COG1843@2|Bacteria,1MXCG@1224|Proteobacteria,2UCHH@28211|Alphaproteobacteria,3JVP9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Required for flagellar hook formation. May act as a scaffolding protein	flgD	-	-	ko:K02389	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FLgD_tudor,FlgD,FlgD_ig
SX3_k127_4700916_28	1297865.APJD01000006_gene4713	9.331e-127	424.0	COG1749@1|root,COG1749@2|Bacteria,1MU5J@1224|Proteobacteria,2TSF2@28211|Alphaproteobacteria,3JSD6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellar basal body protein FlaE	flgE	-	-	ko:K02390	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlaE,Flg_bb_rod,Flg_bbr_C
SX3_k127_4700916_33	1297865.APJD01000006_gene4713	1.48e-112	367.0	COG1749@1|root,COG1749@2|Bacteria,1MU5J@1224|Proteobacteria,2TSF2@28211|Alphaproteobacteria,3JSD6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellar basal body protein FlaE	flgE	-	-	ko:K02390	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	FlaE,Flg_bb_rod,Flg_bbr_C
SX3_k127_4700916_49	1297865.APJD01000006_gene4714	1.09e-38	163.0	2ABZZ@1|root,311HN@2|Bacteria,1N1UA@1224|Proteobacteria,2UCK9@28211|Alphaproteobacteria,3K0HN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_38	1297865.APJD01000006_gene4715	4.468e-86	287.0	2EJWZ@1|root,33DMP@2|Bacteria,1RA8N@1224|Proteobacteria,2U6GF@28211|Alphaproteobacteria,3JY6Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_5	1297865.APJD01000006_gene4716	3.68e-321	989.0	COG1256@1|root,COG1256@2|Bacteria,1MV2M@1224|Proteobacteria,2TV1B@28211|Alphaproteobacteria,3JVDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	flagellar hook-associated protein	flgK	-	-	ko:K02396	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_IN,Flg_bb_rod,Flg_bbr_C
SX3_k127_4700916_23	1297865.APJD01000006_gene4717	4.516e-166	536.0	COG1344@1|root,COG1344@2|Bacteria,1NSHZ@1224|Proteobacteria,2TRS6@28211|Alphaproteobacteria,3JSRC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	flgL	-	-	ko:K02397	ko02040,map02040	-	-	-	ko00000,ko00001,ko02035	-	-	-	Flagellin_C,Flagellin_N
SX3_k127_4700916_16	1297865.APJD01000006_gene4718	4.441e-191	604.0	COG0834@1|root,COG0834@2|Bacteria,1MXX4@1224|Proteobacteria,2TVII@28211|Alphaproteobacteria,3JRYV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial extracellular solute-binding proteins, family 3	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_3
SX3_k127_4700916_44	1297865.APJD01000006_gene4719	1.077e-63	223.0	COG2010@1|root,COG2010@2|Bacteria,1RDPD@1224|Proteobacteria,2U7T0@28211|Alphaproteobacteria,3JYPY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	MA20_34410	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
SX3_k127_4700916_4	1230476.C207_04791	0.0	1158.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3JRZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	exaA	-	1.1.2.8,1.1.5.11	ko:K00114,ko:K20937	ko00010,ko00625,ko01100,ko01110,ko01120,ko01130,map00010,map00625,map01100,map01110,map01120,map01130	-	R05062,R05198,R05285	RC00087,RC00088,RC01039	ko00000,ko00001,ko01000	-	-	-	PQQ,PQQ_2
SX3_k127_4700916_48	1297865.APJD01000006_gene4721	5.95e-39	150.0	2ERCH@1|root,33IY6@2|Bacteria,1NMJJ@1224|Proteobacteria,2UJKT@28211|Alphaproteobacteria,3K27J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_42	172088.AUGA01000008_gene1133	2.124e-65	226.0	COG5126@1|root,COG5126@2|Bacteria,1N18I@1224|Proteobacteria,2UDV5@28211|Alphaproteobacteria,3K5T4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	DTZ	EF-hand, calcium binding motif	MA20_34420	-	-	-	-	-	-	-	-	-	-	-	EF-hand_1,EF-hand_5,EF-hand_8
SX3_k127_4700916_51	1197906.CAJQ02000015_gene239	2.188e-08	61.0	2AHHA@1|root,317UR@2|Bacteria,1NKSG@1224|Proteobacteria,2UK6M@28211|Alphaproteobacteria,3K1UU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis. PQQ is probably formed by cross-linking a specific glutamate to a specific tyrosine residue and excising these residues from the peptide	-	-	-	-	-	-	-	-	-	-	-	-	PqqA
SX3_k127_4700916_19	1297865.APJD01000006_gene4724	3.613e-182	580.0	COG3637@1|root,COG3637@2|Bacteria,1QUBN@1224|Proteobacteria,2TVCZ@28211|Alphaproteobacteria,3JUEC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_47	1230476.C207_04788	2.181e-46	167.0	2EB1A@1|root,33524@2|Bacteria,1MZQX@1224|Proteobacteria,2UC8U@28211|Alphaproteobacteria,3K05B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_34435	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_43	1230476.C207_04787	2.152e-65	224.0	2E8RF@1|root,3332E@2|Bacteria,1REVM@1224|Proteobacteria,2U7I1@28211|Alphaproteobacteria,3JYS6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_25	1297865.APJD01000006_gene4727	6.777e-149	471.0	COG1116@1|root,COG1116@2|Bacteria,1MU6C@1224|Proteobacteria,2TS5F@28211|Alphaproteobacteria,3JUER@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_4700916_39	622637.KE124774_gene4000	1.276e-83	301.0	COG0600@1|root,COG0600@2|Bacteria,1MWS0@1224|Proteobacteria,2TR0G@28211|Alphaproteobacteria,36Y0P@31993|Methylocystaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_34455	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_4700916_13	1297865.APJD01000006_gene4729	1.055e-200	627.0	COG0715@1|root,COG0715@2|Bacteria,1MWUA@1224|Proteobacteria,2TRS0@28211|Alphaproteobacteria,3JTSE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1/THI5 like	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
SX3_k127_4700916_45	1230476.C207_04783	3.606e-61	213.0	2C7YM@1|root,32RK3@2|Bacteria,1N2IQ@1224|Proteobacteria,2UC0T@28211|Alphaproteobacteria,3JZNE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_20	1297865.APJD01000006_gene4731	2.129e-178	559.0	COG5501@1|root,COG5501@2|Bacteria,1PB0I@1224|Proteobacteria,2TR7M@28211|Alphaproteobacteria,3JVW1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfur oxidation protein SoxY	MA20_34470	-	-	ko:K17226	ko00920,ko01100,ko01120,map00920,map01100,map01120	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	-	-	-	SoxY,SoxZ
SX3_k127_4700916_18	1230476.C207_04781	8.365e-186	582.0	COG0491@1|root,COG0491@2|Bacteria,1MX4H@1224|Proteobacteria,2TR8F@28211|Alphaproteobacteria,3JQMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_4700916_15	1297865.APJD01000006_gene4733	1.137e-194	607.0	COG0834@1|root,COG0834@2|Bacteria,1MWWZ@1224|Proteobacteria,2TU2F@28211|Alphaproteobacteria,3JQVZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	MA20_34480	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_3
SX3_k127_4700916_31	1297865.APJD01000006_gene4734	4.433e-120	391.0	COG0607@1|root,COG0607@2|Bacteria,1MZG3@1224|Proteobacteria,2U1W0@28211|Alphaproteobacteria,3JVWG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	COG0607 Rhodanese-related sulfurtransferase	-	-	-	-	-	-	-	-	-	-	-	-	Rhodanese
SX3_k127_4700916_46	1297865.APJD01000006_gene4735	7.005e-47	169.0	2AFJV@1|root,315KR@2|Bacteria,1NDYV@1224|Proteobacteria,2UHDK@28211|Alphaproteobacteria,3K119@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Copper binding periplasmic protein CusF	-	-	-	-	-	-	-	-	-	-	-	-	CusF_Ec
SX3_k127_4700916_32	1297865.APJD01000006_gene4736	1.574e-118	392.0	2CCJC@1|root,31PRJ@2|Bacteria,1R6D1@1224|Proteobacteria,2TV8P@28211|Alphaproteobacteria,3JT31@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_21	1297865.APJD01000006_gene4737	1.065e-174	564.0	COG0842@1|root,COG0842@2|Bacteria,1MVUG@1224|Proteobacteria,2TSUF@28211|Alphaproteobacteria,3JRR2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC-2 family transporter protein	MA20_34500	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
SX3_k127_4700916_22	1297865.APJD01000006_gene4738	2.198e-167	533.0	COG1131@1|root,COG1131@2|Bacteria,1MX56@1224|Proteobacteria,2TTQM@28211|Alphaproteobacteria,3JSDM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ATPases associated with a variety of cellular activities	MA20_34505	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
SX3_k127_4700916_12	1297865.APJD01000006_gene4739	3.41e-208	648.0	COG3391@1|root,COG3391@2|Bacteria,1P862@1224|Proteobacteria,2TR6Z@28211|Alphaproteobacteria,3JR8G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	TIGRFAM 40-residue YVTN family beta-propeller repeat protein	MA20_34510	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_D1,Lactonase
SX3_k127_4700916_9	1297865.APJD01000006_gene4740	7.419e-259	798.0	COG0683@1|root,COG0683@2|Bacteria,1MWGW@1224|Proteobacteria,2TRSD@28211|Alphaproteobacteria,3JTKJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	MA20_34515	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_4700916_36	172088.AUGA01000008_gene1114	1.305e-94	314.0	2BJZ8@1|root,32EC2@2|Bacteria,1RF67@1224|Proteobacteria,2U0XR@28211|Alphaproteobacteria,3JUTW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2380)	MA20_34520	-	-	-	-	-	-	-	-	-	-	-	DUF3280
SX3_k127_4700916_17	1297865.APJD01000006_gene4742	1.753e-187	586.0	COG0627@1|root,COG0627@2|Bacteria,1MUID@1224|Proteobacteria,2TQSM@28211|Alphaproteobacteria,3JUQA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine hydrolase involved in the detoxification of formaldehyde	fghA	-	3.1.2.12	ko:K01070	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R00527	RC00167,RC00320	ko00000,ko00001,ko01000	-	CE1	-	Esterase
SX3_k127_4700916_29	1297865.APJD01000006_gene4743	1.079e-126	406.0	COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,2U0JP@28211|Alphaproteobacteria,3JV4J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	MA20_34530	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_4700916_7	1297865.APJD01000006_gene4744	1.112e-275	851.0	COG3851@1|root,COG3851@2|Bacteria,1QUAD@1224|Proteobacteria,2TWPN@28211|Alphaproteobacteria,3JTTS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	-	-	2.7.13.3	ko:K07675	ko02020,map02020	M00473	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA_3,LapD_MoxY_N
SX3_k127_4700916_1	1297865.APJD01000006_gene4745	0.0	1653.0	COG4772@1|root,COG4772@2|Bacteria,1MXJU@1224|Proteobacteria,2TRYT@28211|Alphaproteobacteria,3JU6N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_4700916_41	1297865.APJD01000006_gene4746	6.521e-73	246.0	COG3339@1|root,COG3339@2|Bacteria,1MZCY@1224|Proteobacteria,2UC5S@28211|Alphaproteobacteria,3K0TI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1232)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1232
SX3_k127_4700916_11	1230476.C207_04767	7.005e-221	685.0	COG2207@1|root,COG2207@2|Bacteria,1QUXX@1224|Proteobacteria,2U3YA@28211|Alphaproteobacteria,3JU7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AraC-binding-like domain	MA20_34385	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_4700916_50	1230476.C207_04767	1.315e-12	69.0	COG2207@1|root,COG2207@2|Bacteria,1QUXX@1224|Proteobacteria,2U3YA@28211|Alphaproteobacteria,3JU7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AraC-binding-like domain	MA20_34385	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_4700916_3	1297865.APJD01000006_gene4748	0.0	1242.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3JS9K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	mxaF	-	1.1.2.8	ko:K00114	ko00010,ko00625,ko01100,ko01110,ko01120,ko01130,map00010,map00625,map01100,map01110,map01120,map01130	-	R05062,R05198,R05285	RC00087,RC00088,RC01039	ko00000,ko00001,ko01000	-	-	-	PQQ,PQQ_2
SX3_k127_4700916_35	1230476.C207_04765	7.039e-105	343.0	COG2010@1|root,COG2010@2|Bacteria,1RD7T@1224|Proteobacteria,2U7AF@28211|Alphaproteobacteria,3JSXA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	cycB	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
SX3_k127_4700916_10	1297865.APJD01000006_gene4750	6.377e-250	771.0	COG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,2TT67@28211|Alphaproteobacteria,3JR8Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily	adhC	-	1.1.1.1,1.1.1.284	ko:K00121	ko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_4700916_30	1297865.APJD01000006_gene4751	3.636e-124	398.0	COG3791@1|root,COG3791@2|Bacteria,1MX4A@1224|Proteobacteria,2TSAN@28211|Alphaproteobacteria,3JRS6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione	gfa	-	4.4.1.22	ko:K03396	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R06982	RC00069,RC01707	ko00000,ko00001,ko01000	-	-	-	GFA
SX3_k127_4700916_14	1297865.APJD01000006_gene4752	9.561e-198	619.0	29PH1@1|root,30AF6@2|Bacteria,1RFGQ@1224|Proteobacteria,2U92B@28211|Alphaproteobacteria,3JVHW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4700916_52	398525.KB900701_gene6435	3.356e-06	51.0	2AJE3@1|root,319ZW@2|Bacteria,1NV0T@1224|Proteobacteria,2URPU@28211|Alphaproteobacteria,3K3XM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4705907_5	1297865.APJD01000023_gene1125	2.24e-141	449.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2TSD9@28211|Alphaproteobacteria,3JVBA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	ampR	GO:0002791,GO:0002793,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010604,GO:0019219,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031326,GO:0032268,GO:0032270,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0043455,GO:0043565,GO:0043900,GO:0043901,GO:0044424,GO:0044464,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051246,GO:0051247,GO:0051252,GO:0060255,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0097159,GO:0140110,GO:1900190,GO:1900191,GO:1900231,GO:1900232,GO:1900376,GO:1900378,GO:1901363,GO:1903506,GO:1903530,GO:1903532,GO:1904951,GO:2000112,GO:2001141	-	ko:K17850	ko01501,map01501	M00628	-	-	ko00000,ko00001,ko00002,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_4705907_2	1230476.C207_06727	1.111e-172	545.0	COG2367@1|root,COG2367@2|Bacteria,1NMW4@1224|Proteobacteria,2TX7R@28211|Alphaproteobacteria,3JSG3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase enzyme family	-	-	3.5.2.6	ko:K17836	ko00311,ko01130,ko01501,map00311,map01130,map01501	M00627,M00628	R06363	RC01499	ko00000,ko00001,ko00002,ko01000,ko01504	-	-	-	Beta-lactamase2
SX3_k127_4705907_1	1297865.APJD01000023_gene1127	1.546e-202	631.0	COG0524@1|root,COG0524@2|Bacteria,1MX38@1224|Proteobacteria,2TST9@28211|Alphaproteobacteria,3JV2K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	pfkB family carbohydrate kinase	-	-	2.7.1.4	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	-	R00760,R00867,R03920	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	PfkB
SX3_k127_4705907_0	1297865.APJD01000023_gene1128	0.0	1087.0	COG1069@1|root,COG1069@2|Bacteria,1MY11@1224|Proteobacteria,2TTQN@28211|Alphaproteobacteria,3JU1K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FGGY family of carbohydrate kinases, C-terminal domain	MA20_14710	-	2.7.1.47	ko:K00875	ko00040,ko01100,map00040,map01100	-	R01526	RC00002,RC00538	ko00000,ko00001,ko01000	-	-	-	FGGY_C,FGGY_N
SX3_k127_4705907_3	1297865.APJD01000023_gene1129	9.373e-165	519.0	COG1028@1|root,COG1028@2|Bacteria,1PGYI@1224|Proteobacteria,2VEUE@28211|Alphaproteobacteria,3JT4F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_14715	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_4705907_4	1297865.APJD01000023_gene1130	4.098e-150	475.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,3JT93@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TOBE domain	smoK	-	-	ko:K10111	ko02010,map02010	M00194,M00200,M00204,M00207,M00491	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.1	-	-	ABC_tran,TOBE,TOBE_2
SX3_k127_4716588_2	1297865.APJD01000006_gene4464	7.717e-208	647.0	COG0752@1|root,COG0752@2|Bacteria,1MVCJ@1224|Proteobacteria,2TS2N@28211|Alphaproteobacteria,3JQY2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	glycyl-tRNA synthetase alpha subunit	glyQ	-	6.1.1.14	ko:K01878	ko00970,map00970	M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_2e
SX3_k127_4716588_0	1297865.APJD01000006_gene4465	0.0	1359.0	COG0751@1|root,COG0751@2|Bacteria,1MV2F@1224|Proteobacteria,2TQKJ@28211|Alphaproteobacteria,3JRW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Glycyl-tRNA synthetase beta subunit	glyS	-	6.1.1.14	ko:K01879	ko00970,map00970	M00360	R03654	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	DALR_1,tRNA_synt_2f
SX3_k127_4716588_3	1297865.APJD01000006_gene4466	1.284e-123	396.0	COG0500@1|root,COG0500@2|Bacteria,1R555@1224|Proteobacteria,2U4Z7@28211|Alphaproteobacteria,3JVDN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Tellurite resistance protein TehB	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
SX3_k127_4716588_1	1297865.APJD01000006_gene4467	2.165e-218	680.0	29JCV@1|root,306AB@2|Bacteria,1R3WP@1224|Proteobacteria,2U2MK@28211|Alphaproteobacteria,3JWI9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4716816_4	1297865.APJD01000011_gene6710	1.01e-154	493.0	COG4638@1|root,COG4638@2|Bacteria,1MV2G@1224|Proteobacteria,2TT1V@28211|Alphaproteobacteria,3JUQD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
SX3_k127_4716816_1	1297865.APJD01000011_gene6709	2.64e-194	607.0	COG0583@1|root,COG0583@2|Bacteria,1R8SG@1224|Proteobacteria,2U3PG@28211|Alphaproteobacteria,3JWP2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_4716816_5	1297865.APJD01000011_gene6708	7.416e-77	258.0	COG0346@1|root,COG0346@2|Bacteria,1RCWB@1224|Proteobacteria,2U86C@28211|Alphaproteobacteria,3JYQ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
SX3_k127_4716816_3	1297865.APJD01000011_gene6707	4.373e-168	534.0	COG2197@1|root,COG2197@2|Bacteria,1QAMX@1224|Proteobacteria,2VF1K@28211|Alphaproteobacteria,3JVCR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
SX3_k127_4716816_2	1297865.APJD01000011_gene6706	3.073e-171	538.0	COG1011@1|root,COG1011@2|Bacteria,1MU1H@1224|Proteobacteria,2U2PC@28211|Alphaproteobacteria,3JWUM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	HAD_2
SX3_k127_4716816_0	1297865.APJD01000011_gene6705	1.797e-264	815.0	COG2124@1|root,COG2124@2|Bacteria,1N0ID@1224|Proteobacteria,2TT7V@28211|Alphaproteobacteria,3JQMQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	MA20_11175	-	-	ko:K21034	-	-	-	-	ko00000,ko00199	-	-	-	p450
SX3_k127_4720426_0	1297865.APJD01000032_gene1635	0.0	1557.0	COG0556@1|root,COG0556@2|Bacteria,1MUFK@1224|Proteobacteria,2TQSP@28211|Alphaproteobacteria,3JR4I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage	uvrB	-	-	ko:K03702	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	Helicase_C,ResIII,UVR,UvrB
SX3_k127_4720426_2	1297865.APJD01000032_gene1636	5.057e-85	297.0	COG0748@1|root,COG0748@2|Bacteria,1RBVH@1224|Proteobacteria,2U6I3@28211|Alphaproteobacteria,3JY7V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Pyridoxamine 5'-phosphate oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Putative_PNPOx
SX3_k127_4720426_1	1297865.APJD01000032_gene1637	2.28e-102	333.0	COG3153@1|root,COG3153@2|Bacteria,1RA42@1224|Proteobacteria,2UA4N@28211|Alphaproteobacteria,3JZT9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Acetyltransferase (GNAT) domain	-	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006473,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564	-	ko:K03824	-	-	-	-	ko00000,ko01000	-	-	-	Acetyltransf_1,Acetyltransf_7,Acetyltransf_9
SX3_k127_4720426_3	1297865.APJD01000032_gene1638	3.568e-68	233.0	2BTE0@1|root,32NK2@2|Bacteria,1RDEG@1224|Proteobacteria,2U772@28211|Alphaproteobacteria,3JYX2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4725190_22	517417.Cpar_0655	2.295e-26	119.0	COG1262@1|root,COG1262@2|Bacteria	2|Bacteria	T	PFAM Formylglycine-generating sulfatase enzyme	-	-	-	-	-	-	-	-	-	-	-	-	DUF1566,FGE-sulfatase,PEGA,SEFIR,TIR_2
SX3_k127_4725190_25	1230476.C207_05805	3.929e-08	59.0	COG0346@1|root,COG0346@2|Bacteria,1MXNZ@1224|Proteobacteria,2VG67@28211|Alphaproteobacteria,3JXZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.14	ko:K10621	ko00362,ko00622,ko01120,ko01220,map00362,map00622,map01120,map01220	M00539	R01507,R05248	RC00387,RC01308	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_4725190_17	1297865.APJD01000014_gene475	2.8e-102	334.0	COG3865@1|root,COG3865@2|Bacteria,1N7IY@1224|Proteobacteria,2U993@28211|Alphaproteobacteria,3JRSK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	3-demethylubiquinone-9 3-methyltransferase	-	-	2.1.1.222,2.1.1.64	ko:K00568	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04988,R05614,R08769,R08781	RC00003,RC00392,RC01895	ko00000,ko00001,ko00002,ko01000	-	-	-	3-dmu-9_3-mt
SX3_k127_4725190_1	1297865.APJD01000014_gene474	1.675e-287	885.0	COG1680@1|root,COG1680@2|Bacteria,1P3SQ@1224|Proteobacteria,2U0E0@28211|Alphaproteobacteria,3JS2D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	MA20_27655	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_4725190_16	1297865.APJD01000014_gene473	2.584e-102	333.0	COG0242@1|root,COG0242@2|Bacteria,1RFCS@1224|Proteobacteria,2U715@28211|Alphaproteobacteria,3JUD9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	def2	GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564	3.5.1.88	ko:K01462	-	-	-	-	ko00000,ko01000	-	-	-	Pep_deformylase
SX3_k127_4725190_26	258594.RPA0628	1.351e-05	53.0	COG3409@1|root,COG5480@1|root,COG3409@2|Bacteria,COG5480@2|Bacteria,1P9ZA@1224|Proteobacteria,2TSTF@28211|Alphaproteobacteria,3JVQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF1036)	MA20_21840	-	-	-	-	-	-	-	-	-	-	-	DUF1036,PG_binding_1
SX3_k127_4725190_7	1297865.APJD01000014_gene472	1.628e-185	581.0	COG0454@1|root,COG1846@1|root,COG0456@2|Bacteria,COG1846@2|Bacteria,1MWIC@1224|Proteobacteria,2TST3@28211|Alphaproteobacteria,3JRSN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	MA20_27725	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,MarR_2
SX3_k127_4725190_0	1297865.APJD01000014_gene471	0.0	1052.0	COG0457@1|root,COG0457@2|Bacteria,1MUZK@1224|Proteobacteria,2TS0U@28211|Alphaproteobacteria,3JRSC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_9,TPR_1,TPR_11,TPR_16,TPR_19,TPR_2,TPR_4,TPR_8
SX3_k127_4725190_9	1297865.APJD01000014_gene470	5.452e-164	526.0	COG0697@1|root,COG0697@2|Bacteria,1MXJY@1224|Proteobacteria,2TVBG@28211|Alphaproteobacteria,3JXDP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_4725190_18	1297865.APJD01000014_gene469	7.063e-91	300.0	COG1846@1|root,COG1846@2|Bacteria,1N1CJ@1224|Proteobacteria,2U1AG@28211|Alphaproteobacteria,3JT43@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_4725190_8	1297865.APJD01000014_gene468	1.193e-183	574.0	COG4312@1|root,COG4312@2|Bacteria,1NAXN@1224|Proteobacteria,2TTHB@28211|Alphaproteobacteria,3JSA2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF899)	MA20_01595	-	-	-	-	-	-	-	-	-	-	-	DUF899
SX3_k127_4725190_12	1297865.APJD01000014_gene467	1.025e-123	398.0	COG1182@1|root,COG1182@2|Bacteria,1P59R@1224|Proteobacteria,2U63R@28211|Alphaproteobacteria,3JW5Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity	azoR	-	-	ko:K01118	-	-	-	-	ko00000,ko01000	-	-	-	Flavodoxin_2
SX3_k127_4725190_20	1297865.APJD01000014_gene466	1.562e-82	274.0	COG1733@1|root,COG1733@2|Bacteria,1MZ6N@1224|Proteobacteria,2UC19@28211|Alphaproteobacteria,3JYXT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_4725190_5	1297865.APJD01000014_gene465	7.054e-229	711.0	COG0758@1|root,COG0758@2|Bacteria,1MVF6@1224|Proteobacteria,2TRQE@28211|Alphaproteobacteria,3JU47@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	LU	DNA recombination-mediator protein A	dprA	-	-	ko:K04096	-	-	-	-	ko00000	-	-	-	DNA_processg_A
SX3_k127_4725190_3	1297865.APJD01000014_gene464	4.706e-260	803.0	COG0154@1|root,COG0154@2|Bacteria,1MWRI@1224|Proteobacteria,2TTJU@28211|Alphaproteobacteria,3JVBW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	MA20_36405	-	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
SX3_k127_4725190_13	1297865.APJD01000014_gene463	9.944e-120	386.0	COG0344@1|root,COG0344@2|Bacteria,1RD4Z@1224|Proteobacteria,2U7BZ@28211|Alphaproteobacteria,3JRDJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP	plsY	-	2.3.1.15	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	M00089	R00851,R09380	RC00004,RC00039,RC00041	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	G3P_acyltransf
SX3_k127_4725190_2	1297865.APJD01000014_gene462	2.194e-278	857.0	COG0044@1|root,COG0044@2|Bacteria,1MVXY@1224|Proteobacteria,2TSTM@28211|Alphaproteobacteria,3JSMQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily	pyrC	-	3.5.2.3	ko:K01465	ko00240,ko01100,map00240,map01100	M00051	R01993	RC00632	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_1
SX3_k127_4725190_6	1230476.C207_04191	3.663e-199	627.0	COG0540@1|root,COG0540@2|Bacteria,1MWAB@1224|Proteobacteria,2TRHP@28211|Alphaproteobacteria,3JR2V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the ATCase OTCase family	pyrB	GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.1.3.2	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R01397	RC00064,RC02850	ko00000,ko00001,ko00002,ko01000	-	-	-	OTCace,OTCace_N
SX3_k127_4725190_21	1297865.APJD01000014_gene460	1.881e-75	258.0	COG0735@1|root,COG0735@2|Bacteria,1RH58@1224|Proteobacteria,2U75R@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Belongs to the Fur family	-	-	-	ko:K09826	-	-	-	-	ko00000,ko03000	-	-	-	FUR
SX3_k127_4725190_14	1297865.APJD01000014_gene459	1.876e-116	376.0	COG0450@1|root,COG0450@2|Bacteria,1MWPY@1224|Proteobacteria,2TV43@28211|Alphaproteobacteria,3JVQV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Redoxin	ahpC	-	1.11.1.15	ko:K03386	ko04214,map04214	-	-	-	ko00000,ko00001,ko01000,ko04147	-	-	-	1-cysPrx_C,AhpC-TSA
SX3_k127_4725190_15	1297865.APJD01000014_gene458	2.931e-111	368.0	2FDPI@1|root,345QP@2|Bacteria,1NI47@1224|Proteobacteria,2UMY6@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4725190_11	1297865.APJD01000014_gene457	1.223e-124	400.0	COG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,2TU3T@28211|Alphaproteobacteria,3JRQP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Destroys radicals which are normally produced within the cells and which are toxic to biological systems	sodB	-	1.15.1.1	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	-	-	-	ko00000,ko00001,ko01000	-	-	-	Sod_Fe_C,Sod_Fe_N
SX3_k127_4725190_10	1297865.APJD01000014_gene456	1.428e-156	494.0	COG2173@1|root,COG2173@2|Bacteria,1RENK@1224|Proteobacteria,2TRK8@28211|Alphaproteobacteria,3JQQR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide	ddpX	-	3.4.13.22	ko:K08641	ko01502,ko02020,map01502,map02020	M00651	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504	-	-	-	Peptidase_M15
SX3_k127_4725190_19	1297865.APJD01000014_gene455	2.941e-85	283.0	2FB9S@1|root,343FX@2|Bacteria,1RFFN@1224|Proteobacteria,2U7UY@28211|Alphaproteobacteria,3JYYK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4725190_4	1297865.APJD01000014_gene454	1.279e-255	790.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQU2@28211|Alphaproteobacteria,3JST9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	aidB	GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003995,GO:0005488,GO:0005515,GO:0006355,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008470,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016491,GO:0016627,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0033554,GO:0042802,GO:0043565,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0055114,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141	-	ko:K09456	-	-	-	-	ko00000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M
SX3_k127_4725992_1	1297865.APJD01000010_gene4876	1.167e-261	807.0	COG0303@1|root,COG0303@2|Bacteria,1MVD5@1224|Proteobacteria,2TQRI@28211|Alphaproteobacteria,3JRT8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	MoeA C-terminal region (domain IV)	moeA	-	2.10.1.1	ko:K03750	ko00790,ko01100,map00790,map01100	-	R09735	RC03462	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,MoeA_C,MoeA_N
SX3_k127_4725992_3	1297865.APJD01000010_gene4875	4.983e-180	566.0	COG1526@1|root,COG1526@2|Bacteria,1MY28@1224|Proteobacteria,2VFYH@28211|Alphaproteobacteria,3JUDR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH	fdhD	-	-	ko:K02379	-	-	-	-	ko00000	-	-	-	FdhD-NarQ
SX3_k127_4725992_5	1297865.APJD01000010_gene4874	1.813e-122	396.0	COG0746@1|root,COG0746@2|Bacteria,1RH3M@1224|Proteobacteria,2TV2G@28211|Alphaproteobacteria,3JT8E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor	mobA	-	2.7.7.77	ko:K03752	ko00790,ko01100,map00790,map01100	-	R11581	-	ko00000,ko00001,ko01000	-	-	-	NTP_transf_3
SX3_k127_4725992_2	1297865.APJD01000010_gene4873	1.709e-198	620.0	COG0596@1|root,COG0596@2|Bacteria,1NJ2B@1224|Proteobacteria,2TR54@28211|Alphaproteobacteria,3JQWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_4725992_0	1297865.APJD01000010_gene4872	2.07e-314	972.0	COG0044@1|root,COG0044@2|Bacteria,1MW10@1224|Proteobacteria,2TSQH@28211|Alphaproteobacteria,3JTGE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Function of homologous gene experimentally demonstrated in an other organism	-	-	3.5.2.2	ko:K01464	ko00240,ko00410,ko00770,ko00983,ko01100,map00240,map00410,map00770,map00983,map01100	M00046	R02269,R03055,R08227	RC00632,RC00680	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Amidohydro_1,Urease_alpha
SX3_k127_4725992_4	1297865.APJD01000010_gene4871	1.195e-151	481.0	COG4126@1|root,COG4126@2|Bacteria,1MVNB@1224|Proteobacteria,2TQQI@28211|Alphaproteobacteria,3JT9U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Asp/Glu/Hydantoin racemase	-	-	-	-	-	-	-	-	-	-	-	-	Asp_Glu_race
SX3_k127_4725992_6	1297865.APJD01000010_gene4870	4.266e-113	365.0	COG1802@1|root,COG1802@2|Bacteria,1N7GE@1224|Proteobacteria,2U49F@28211|Alphaproteobacteria,3JX9F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_4741189_9	1297865.APJD01000011_gene6753	2.162e-31	124.0	COG3409@1|root,COG3409@2|Bacteria,1QSDM@1224|Proteobacteria,2U4B9@28211|Alphaproteobacteria,3JU8K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	PAN domain	-	-	-	-	-	-	-	-	-	-	-	-	PAN_4
SX3_k127_4741189_2	1297865.APJD01000011_gene6752	3.882e-311	952.0	COG3572@1|root,COG3572@2|Bacteria,1MU47@1224|Proteobacteria,2TRPT@28211|Alphaproteobacteria,3JR2Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	glutamate--cysteine ligase	gshA	-	6.3.2.2	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	M00118	R00894,R10993	RC00064,RC00090	ko00000,ko00001,ko00002,ko01000	-	-	-	GCS2
SX3_k127_4741189_6	1297865.APJD01000011_gene6751	1.227e-106	346.0	COG1846@1|root,COG1846@2|Bacteria,1QASF@1224|Proteobacteria,2TTQH@28211|Alphaproteobacteria,3JQNP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	MarR family	MA20_19890	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_4741189_4	172088.AUGA01000001_gene6561	1.175e-148	471.0	COG0625@1|root,COG0625@2|Bacteria,1MY47@1224|Proteobacteria,2TVGA@28211|Alphaproteobacteria,3JR7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	attY	GO:0000302,GO:0003674,GO:0003824,GO:0004364,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0009636,GO:0010035,GO:0016740,GO:0016765,GO:0042221,GO:0042493,GO:0042542,GO:0044424,GO:0044464,GO:0046677,GO:0050896,GO:1901700	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_3,GST_N,GST_N_2,GST_N_3
SX3_k127_4741189_0	1297865.APJD01000011_gene6749	0.0	1462.0	COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TS8E@28211|Alphaproteobacteria,3JSUZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase isomerase	fadJ	-	1.1.1.35,4.2.1.17,5.1.2.3	ko:K01782	ko00071,ko00280,ko00281,ko00310,ko00362,ko00380,ko00410,ko00640,ko00650,ko00903,ko00930,ko01040,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00362,map00380,map00410,map00640,map00650,map00903,map00930,map01040,map01100,map01110,map01120,map01130,map01200,map01212	M00032,M00087	R01975,R03026,R03045,R03276,R04137,R04170,R04203,R04204,R04224,R04737,R04738,R04739,R04740,R04741,R04744,R04745,R04746,R04748,R04749,R05066,R05305,R06411,R06412,R06941,R06942,R07935,R07951,R08093,R08094	RC00029,RC00099,RC00117,RC00241,RC00525,RC00831,RC00834,RC00896,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	3HCDH,3HCDH_N,ECH_1
SX3_k127_4741189_3	1297865.APJD01000011_gene6748	4.761e-255	788.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TS1R@28211|Alphaproteobacteria,3JSA0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	fadA	GO:0003674,GO:0003824,GO:0003988,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006805,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016020,GO:0016042,GO:0016054,GO:0016408,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019439,GO:0019748,GO:0019752,GO:0030258,GO:0030312,GO:0032787,GO:0033554,GO:0033812,GO:0034440,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044464,GO:0046395,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0071944,GO:0072329,GO:0098754,GO:1901360,GO:1901361,GO:1901575	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_4741189_1	1297865.APJD01000011_gene6747	0.0	1197.0	COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2TQJS@28211|Alphaproteobacteria,3JUYV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase N terminal	MA20_19860	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_M,Acyl-CoA_dh_N,AcylCoA_DH_N
SX3_k127_4741189_7	1297865.APJD01000011_gene6746	6.254e-88	291.0	COG3631@1|root,COG3631@2|Bacteria,1RHRD@1224|Proteobacteria,2U9AT@28211|Alphaproteobacteria,3JYWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	MA20_19855	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
SX3_k127_4741189_5	1230476.C207_03102	7.934e-118	381.0	COG1695@1|root,COG1695@2|Bacteria,1RFWJ@1224|Proteobacteria,2TR93@28211|Alphaproteobacteria,3JREX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Virulence activator alpha C-term	MA20_19850	-	-	-	-	-	-	-	-	-	-	-	PadR,Vir_act_alpha_C
SX3_k127_4741189_8	1297865.APJD01000011_gene6744	3.024e-60	209.0	COG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,2TR2B@28211|Alphaproteobacteria,3JRS2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Sel1-like repeats.	-	-	-	ko:K07126,ko:K13582	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	PG_binding_1,Sel1
SX3_k127_4750805_0	1297865.APJD01000019_gene3223	0.0	1752.0	COG1042@1|root,COG1670@1|root,COG1042@2|Bacteria,COG1670@2|Bacteria,1MW98@1224|Proteobacteria,2TR24@28211|Alphaproteobacteria,3JR42@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CJ	ATP-grasp domain	MA20_38090	-	-	ko:K09181	-	-	-	-	ko00000	-	-	-	ATP-grasp_5,Acetyltransf_1,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
SX3_k127_4750805_2	1297865.APJD01000019_gene3222	0.0	1199.0	COG0370@1|root,COG0370@2|Bacteria,1MUZC@1224|Proteobacteria,2TQSU@28211|Alphaproteobacteria,3JUFP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ferrous iron transport protein B	feoB	-	-	ko:K04759	-	-	-	-	ko00000,ko02000	9.A.8.1	-	-	FeoB_C,FeoB_N,Gate
SX3_k127_4750805_18	1297865.APJD01000019_gene3221	3.814e-53	187.0	COG1918@1|root,COG1918@2|Bacteria,1N8DT@1224|Proteobacteria,2UFJ3@28211|Alphaproteobacteria,3JZI0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	FeoA	feoA	-	-	ko:K04758	-	-	-	-	ko00000,ko02000	-	-	-	FeoA
SX3_k127_4750805_1	1297865.APJD01000019_gene3220	0.0	1380.0	COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JTPK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	sensor histidine kinase with a Response regulator receiver domain	-	-	2.7.13.3	ko:K02482	-	-	-	-	ko00000,ko01000,ko01001,ko02022	-	-	-	GAF,GAF_2,HATPase_c,HisKA,PAS_3,PAS_4,PAS_8,PAS_9,Response_reg,dCache_1
SX3_k127_4750805_14	1297865.APJD01000019_gene3219	4.114e-81	272.0	COG0346@1|root,COG0346@2|Bacteria,1RH79@1224|Proteobacteria,2UAPG@28211|Alphaproteobacteria,3JYFP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	MA20_43515	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_4750805_21	936455.KI421499_gene6488	1.412e-20	98.0	2B022@1|root,31SC8@2|Bacteria,1N3WE@1224|Proteobacteria,2UE22@28211|Alphaproteobacteria,3K0MN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4750805_19	172088.AUGA01000018_gene2121	1.95e-50	191.0	29V13@1|root,30GE8@2|Bacteria,1P8XE@1224|Proteobacteria,2UZ1K@28211|Alphaproteobacteria,3K5K5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4750805_7	1297865.APJD01000019_gene3218	1.102e-231	741.0	COG2885@1|root,COG2885@2|Bacteria,1PQ3A@1224|Proteobacteria,2TRBD@28211|Alphaproteobacteria,3JSN0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	OmpA family	MA20_43500	-	-	-	-	-	-	-	-	-	-	-	OmpA
SX3_k127_4750805_3	1297865.APJD01000019_gene3217	0.0	1056.0	COG1785@1|root,COG1785@2|Bacteria,1MXI2@1224|Proteobacteria,2TTUZ@28211|Alphaproteobacteria,3JV60@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Alkaline phosphatase homologues	phoA	-	3.1.3.1	ko:K01077	ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020	M00126	R02135,R04620	RC00017	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147	-	-	-	Alk_phosphatase
SX3_k127_4750805_22	398525.KB900701_gene1701	1.891e-14	85.0	COG1785@1|root,COG1785@2|Bacteria,1MXI2@1224|Proteobacteria,2TTUZ@28211|Alphaproteobacteria,3JV60@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Alkaline phosphatase homologues	phoA	-	3.1.3.1	ko:K01077	ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020	M00126	R02135,R04620	RC00017	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147	-	-	-	Alk_phosphatase
SX3_k127_4750805_16	1297865.APJD01000019_gene3216	9.904e-71	250.0	COG3631@1|root,COG3631@2|Bacteria,1RDDF@1224|Proteobacteria,2U73P@28211|Alphaproteobacteria,3JYYD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
SX3_k127_4750805_12	1297865.APJD01000019_gene3215	2.34e-116	375.0	COG1309@1|root,COG1309@2|Bacteria,1R5GP@1224|Proteobacteria,2TVDR@28211|Alphaproteobacteria,3JUHQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_4750805_4	1297865.APJD01000019_gene3214	3.015e-295	906.0	COG0137@1|root,COG0137@2|Bacteria,1MV0Y@1224|Proteobacteria,2TTGS@28211|Alphaproteobacteria,3JRAJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the argininosuccinate synthase family. Type 2 subfamily	argG	GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	6.3.4.5	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	M00029,M00844,M00845	R01954	RC00380,RC00629	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Arginosuc_synth
SX3_k127_4750805_10	1297865.APJD01000019_gene3213	5.438e-171	537.0	COG0671@1|root,COG0671@2|Bacteria,1N4GM@1224|Proteobacteria,2TURF@28211|Alphaproteobacteria,3JRG0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	PAP2 superfamily	MA20_43480	-	-	ko:K12978	-	-	-	-	ko00000,ko01000,ko01005	-	-	-	PAP2
SX3_k127_4750805_13	1297865.APJD01000019_gene3212	5.292e-95	312.0	2C8HF@1|root,2ZXE6@2|Bacteria,1R5PH@1224|Proteobacteria,2U64K@28211|Alphaproteobacteria,3JYIK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_43475	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4750805_20	933262.AXAM01000175_gene2922	2.755e-25	117.0	2DP71@1|root,330U0@2|Bacteria,1R5A0@1224|Proteobacteria,42X0W@68525|delta/epsilon subdivisions,2WSIB@28221|Deltaproteobacteria,2MMBG@213118|Desulfobacterales	28221|Deltaproteobacteria	S	Protein of unknown function (DUF2971)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2971
SX3_k127_4750805_6	1297865.APJD01000019_gene3211	6.056e-267	822.0	COG0820@1|root,COG0820@2|Bacteria,1MUYK@1224|Proteobacteria,2TQT3@28211|Alphaproteobacteria,3JUHU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs	rlmN	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360	2.1.1.192	ko:K06941	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Radical_SAM
SX3_k127_4750805_11	1230476.C207_04120	5.395e-119	383.0	COG5342@1|root,COG5342@2|Bacteria,1R46Z@1224|Proteobacteria,2U5KW@28211|Alphaproteobacteria,3JVKM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	invasion associated locus B	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4750805_9	1297865.APJD01000019_gene3209	7.077e-177	556.0	COG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,2U149@28211|Alphaproteobacteria,3JRKA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_25325	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
SX3_k127_4750805_8	1297865.APJD01000019_gene3208	1.503e-213	665.0	COG0604@1|root,COG0604@2|Bacteria,1MWRK@1224|Proteobacteria,2TQMF@28211|Alphaproteobacteria,3JRI0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	MA20_25320	-	1.1.1.1,1.6.5.5	ko:K00001,ko:K00344	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_4750805_15	1297865.APJD01000019_gene3207	1.779e-75	254.0	COG3339@1|root,COG3339@2|Bacteria,1MZR5@1224|Proteobacteria,2UCIB@28211|Alphaproteobacteria,3JYQE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1232)	MA20_25305	-	-	-	-	-	-	-	-	-	-	-	DUF1232
SX3_k127_4750805_17	1297865.APJD01000019_gene3206	2.298e-59	206.0	COG2154@1|root,COG2154@2|Bacteria,1MZ5Q@1224|Proteobacteria,2UBWN@28211|Alphaproteobacteria,3JZHK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	pterin-4-alpha-carbinolamine dehydratase	phhB	-	4.2.1.96	ko:K01724	ko00790,map00790	-	R04734	RC01208	ko00000,ko00001,ko01000,ko04147	-	-	-	Pterin_4a
SX3_k127_4750805_5	1297865.APJD01000019_gene3205	9.032e-294	903.0	COG2358@1|root,COG2358@2|Bacteria,1N6K6@1224|Proteobacteria,2TTP7@28211|Alphaproteobacteria,3JRR7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NMT1-like family	-	-	-	-	-	-	-	-	-	-	-	-	NMT1_3
SX3_k127_4757656_3	1297865.APJD01000007_gene2232	8.504e-271	834.0	COG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2TR5X@28211|Alphaproteobacteria,3JRW7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M28	MA20_34775	-	3.5.3.9	ko:K02083	ko00230,ko01120,map00230,map01120	-	R02423	RC00064	ko00000,ko00001,ko01000,ko01002	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_4757656_5	1297865.APJD01000007_gene2234	8.925e-199	620.0	COG0583@1|root,COG0583@2|Bacteria,1MWVU@1224|Proteobacteria,2TQS4@28211|Alphaproteobacteria,3JU3N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator, LysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_4757656_8	398525.KB900701_gene3381	3.881e-180	568.0	COG2855@1|root,COG2855@2|Bacteria,1MVIP@1224|Proteobacteria,2TVK9@28211|Alphaproteobacteria,3JV4K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Conserved hypothetical protein 698	MA20_14895	-	-	-	-	-	-	-	-	-	-	-	Cons_hypoth698
SX3_k127_4757656_4	1297865.APJD01000007_gene2236	1.573e-234	725.0	COG0388@1|root,COG0388@2|Bacteria,1MY3W@1224|Proteobacteria,2TTKF@28211|Alphaproteobacteria,3JT3W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide	amiF	-	3.5.1.49	ko:K01455	ko00460,ko00630,ko00910,ko01200,map00460,map00630,map00910,map01200	-	R00524	RC02432,RC02810	ko00000,ko00001,ko01000	-	-	-	CN_hydrolase
SX3_k127_4757656_10	1297865.APJD01000007_gene2237	6.239e-144	458.0	COG1335@1|root,COG1335@2|Bacteria,1MV0W@1224|Proteobacteria,2TUVZ@28211|Alphaproteobacteria,3JTF1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	MA20_17545	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
SX3_k127_4757656_12	1297865.APJD01000007_gene2239	2.946e-26	108.0	COG0395@1|root,COG0395@2|Bacteria	2|Bacteria	P	glycerophosphodiester transmembrane transport	-	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_4757656_0	1297865.APJD01000007_gene2240	0.0	1383.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JQP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,STN,TonB_dep_Rec
SX3_k127_4757656_9	1297865.APJD01000007_gene2241	2.327e-169	539.0	COG0395@1|root,COG0395@2|Bacteria,1MXTE@1224|Proteobacteria,2U09S@28211|Alphaproteobacteria,3JU5C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_4757656_6	1230476.C207_03654	2.084e-193	604.0	COG1175@1|root,COG1175@2|Bacteria,1MWB7@1224|Proteobacteria,2TQZY@28211|Alphaproteobacteria,3JSZ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02025	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_4757656_2	1297865.APJD01000007_gene2243	2.907e-290	895.0	COG1653@1|root,COG1653@2|Bacteria,1MUNZ@1224|Proteobacteria,2U05K@28211|Alphaproteobacteria,3JWRT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_1,TAT_signal
SX3_k127_4757656_7	1297865.APJD01000007_gene2244	2.793e-181	570.0	COG0346@1|root,COG0346@2|Bacteria,1MZT5@1224|Proteobacteria,2U4GS@28211|Alphaproteobacteria,3JV3A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase_3
SX3_k127_4757656_1	1297865.APJD01000007_gene2245	9.89e-308	945.0	COG0665@1|root,COG0665@2|Bacteria,1MVGP@1224|Proteobacteria,2TRX9@28211|Alphaproteobacteria,3JT0G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	DAO
SX3_k127_4757656_11	1297865.APJD01000007_gene2246	6.647e-107	347.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,3JRAE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_4759709_31	1297865.APJD01000043_gene5816	1.674e-169	535.0	COG1840@1|root,COG1840@2|Bacteria,1Q13Q@1224|Proteobacteria,2TS7Y@28211|Alphaproteobacteria,3JRN1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial extracellular solute-binding protein	-	-	-	ko:K02055	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	SBP_bac_6
SX3_k127_4759709_15	1230476.C207_01205	1.083e-238	739.0	COG1063@1|root,COG1063@2|Bacteria,1MV9A@1224|Proteobacteria,2TSWA@28211|Alphaproteobacteria,3JUF7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Alcohol dehydrogenase GroES-like domain	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_4759709_42	172088.AUGA01000008_gene1036	2.038e-134	430.0	COG0410@1|root,COG0410@2|Bacteria,1MUR3@1224|Proteobacteria,2TSWQ@28211|Alphaproteobacteria,3JSPE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_4759709_37	172088.AUGA01000008_gene1037	1.962e-150	483.0	COG0411@1|root,COG0411@2|Bacteria,1MX51@1224|Proteobacteria,2TTG6@28211|Alphaproteobacteria,3JUVS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_4759709_25	172088.AUGA01000008_gene1038	2.891e-191	599.0	COG4177@1|root,COG4177@2|Bacteria,1MWP3@1224|Proteobacteria,2VEXG@28211|Alphaproteobacteria,3JV8W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_4759709_29	1230476.C207_01201	8.728e-172	542.0	COG0559@1|root,COG0559@2|Bacteria,1MY1E@1224|Proteobacteria,2TSIQ@28211|Alphaproteobacteria,3JR6D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_4759709_11	172088.AUGA01000008_gene1040	5.421e-263	812.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3JVAV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_4759709_0	172088.AUGA01000008_gene1041	0.0	1505.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,3JSZE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	-	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_4759709_53	172088.AUGA01000008_gene1042	1.081e-86	290.0	COG2080@1|root,COG2080@2|Bacteria,1RCC9@1224|Proteobacteria,2U3X8@28211|Alphaproteobacteria,3JR9Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	-	-	1.2.5.3	ko:K03518	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Fer2,Fer2_2
SX3_k127_4759709_39	172088.AUGA01000008_gene1043	8.006e-149	475.0	COG1319@1|root,COG1319@2|Bacteria,1MUDB@1224|Proteobacteria,2TTJF@28211|Alphaproteobacteria,3JT56@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CO dehydrogenase flavoprotein C-terminal domain	-	-	1.2.5.3	ko:K03519	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
SX3_k127_4759709_17	172088.AUGA01000008_gene1044	3.637e-229	713.0	COG2141@1|root,COG2141@2|Bacteria,1MX64@1224|Proteobacteria,2TT8C@28211|Alphaproteobacteria,3JXM0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_4759709_24	1297865.APJD01000013_gene1250	1.111e-197	619.0	COG0726@1|root,COG0726@2|Bacteria,1MV3V@1224|Proteobacteria,2TR0I@28211|Alphaproteobacteria,3JWN0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Polysaccharide deacetylase	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_4759709_40	1297865.APJD01000013_gene1251	4.355e-146	463.0	COG1309@1|root,COG1309@2|Bacteria,1MYYS@1224|Proteobacteria,2U28N@28211|Alphaproteobacteria,3JUC1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_4759709_48	172088.AUGA01000008_gene1047	7.783e-106	344.0	COG1853@1|root,COG1853@2|Bacteria,1RGYM@1224|Proteobacteria,2UCHI@28211|Alphaproteobacteria,3JRDM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Flavin reductase like domain	-	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
SX3_k127_4759709_16	398525.KB900701_gene6385	6.263e-238	739.0	COG1960@1|root,COG1960@2|Bacteria,1MXMQ@1224|Proteobacteria,2TTF6@28211|Alphaproteobacteria,3JV1J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	MA20_38220	-	1.14.14.12	ko:K16047	ko00984,ko01100,ko01120,map00984,map01100,map01120	-	R09819	RC00236	ko00000,ko00001,ko01000	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_N
SX3_k127_4759709_54	1230476.C207_01190	1.483e-80	269.0	COG1246@1|root,COG1246@2|Bacteria,1R9Y0@1224|Proteobacteria,2U6BZ@28211|Alphaproteobacteria,3JZBM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Acetyltransferase (GNAT) family	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_4759709_69	1230476.C207_01189	2.511e-22	99.0	29E60@1|root,3013Y@2|Bacteria,1N63C@1224|Proteobacteria,2UBU8@28211|Alphaproteobacteria,3K0EQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_67	288000.BBta_0889	4.987e-28	117.0	2C4QU@1|root,302ST@2|Bacteria,1NE2Z@1224|Proteobacteria,2UGE9@28211|Alphaproteobacteria,3K0W1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_64	1297865.APJD01000013_gene1253	8.123e-32	128.0	2ADSD@1|root,313HX@2|Bacteria,1N6U6@1224|Proteobacteria,2UG05@28211|Alphaproteobacteria,3K0ZP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_59	398525.KB900701_gene6387	2.621e-44	164.0	2BS6D@1|root,32M7G@2|Bacteria,1N149@1224|Proteobacteria,2UD2P@28211|Alphaproteobacteria,3K07I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_62	1230476.C207_01143	8.583e-35	141.0	2A6UN@1|root,30VP1@2|Bacteria,1N1S3@1224|Proteobacteria,2UD7W@28211|Alphaproteobacteria,3K0IQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_55	1297865.APJD01000013_gene1255	2.918e-66	227.0	COG5490@1|root,COG5490@2|Bacteria,1MZM4@1224|Proteobacteria,2UCPK@28211|Alphaproteobacteria,3JYTC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phasin protein	MA20_34695	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
SX3_k127_4759709_63	172088.AUGA01000008_gene1053	3.807e-33	128.0	2AEVE@1|root,314SX@2|Bacteria,1NBFT@1224|Proteobacteria,2UKQB@28211|Alphaproteobacteria,3K10D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_61	1297865.APJD01000013_gene1257	8.387e-35	133.0	2AF4C@1|root,31533@2|Bacteria,1NCEK@1224|Proteobacteria,2UJ31@28211|Alphaproteobacteria,3K198@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_14	1297865.APJD01000013_gene1258	1.172e-243	753.0	COG1304@1|root,COG1304@2|Bacteria,1MUEZ@1224|Proteobacteria,2TU4F@28211|Alphaproteobacteria,3JQPK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FMN-dependent dehydrogenase	MA20_37755	-	1.1.3.15	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	-	R00475	RC00042	ko00000,ko00001,ko01000	-	-	-	FMN_dh
SX3_k127_4759709_19	1297865.APJD01000013_gene1259	3.005e-219	683.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,2TS7I@28211|Alphaproteobacteria,3JR98@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DJ-1/PfpI family	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI,HTH_18
SX3_k127_4759709_34	1297865.APJD01000013_gene1260	7.149e-157	495.0	2BS73@1|root,32M8C@2|Bacteria,1R7B8@1224|Proteobacteria,2TTVE@28211|Alphaproteobacteria,3JR2P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_10	1297865.APJD01000013_gene1261	2.941e-263	814.0	COG0477@1|root,COG2814@2|Bacteria,1QUY6@1224|Proteobacteria,2TWZ0@28211|Alphaproteobacteria,3JTVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_4759709_32	1230476.C207_01135	8.405e-164	516.0	COG3403@1|root,COG3403@2|Bacteria,1R4AQ@1224|Proteobacteria,2U0P7@28211|Alphaproteobacteria,3JVGC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YqcI/YcgG family	-	-	-	ko:K09190	-	-	-	-	ko00000	-	-	-	YqcI_YcgG
SX3_k127_4759709_26	1297865.APJD01000067_gene7059	1.358e-179	566.0	COG2801@1|root,COG2801@2|Bacteria,1MVC8@1224|Proteobacteria,2TRX0@28211|Alphaproteobacteria,3JW35@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_21,rve,rve_3
SX3_k127_4759709_57	1297865.APJD01000067_gene7058	6.698e-59	204.0	COG2963@1|root,COG2963@2|Bacteria,1N06K@1224|Proteobacteria,2U9BK@28211|Alphaproteobacteria,3K068@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	COG2963 Transposase and inactivated derivatives	-	-	-	-	-	-	-	-	-	-	-	-	HTH_28,HTH_Tnp_1
SX3_k127_4759709_56	1297865.APJD01000013_gene1263	1.197e-60	216.0	COG1917@1|root,COG1917@2|Bacteria,1RFM2@1224|Proteobacteria,2U8E7@28211|Alphaproteobacteria,3JYYW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AraC-like ligand binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_4759709_70	1245469.S58_23650	1.963e-16	86.0	2ADXH@1|root,313PP@2|Bacteria,1N7HU@1224|Proteobacteria,2UFZM@28211|Alphaproteobacteria,3K18I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_34700	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_66	1230476.C207_01133	3.734e-29	116.0	2ANVX@1|root,31DWG@2|Bacteria,1NF9Q@1224|Proteobacteria,2UHND@28211|Alphaproteobacteria,3K17A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_9	172088.AUGA01000008_gene1061	1.331e-265	819.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,3JRB8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_38225	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_4759709_52	1230476.C207_01131	2.446e-93	306.0	COG3791@1|root,COG3791@2|Bacteria,1RCYS@1224|Proteobacteria,2U5UG@28211|Alphaproteobacteria,3JUX3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
SX3_k127_4759709_46	1297865.APJD01000013_gene1266	1.371e-121	393.0	2FFDN@1|root,347B9@2|Bacteria,1N3AI@1224|Proteobacteria,2TUEQ@28211|Alphaproteobacteria,3JTK2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_51	1297865.APJD01000013_gene1267	4.913e-96	314.0	COG5352@1|root,COG5352@2|Bacteria,1P31N@1224|Proteobacteria,2TVRI@28211|Alphaproteobacteria,3JSR5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GcrA cell cycle regulator	-	-	-	ko:K13583	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	GcrA
SX3_k127_4759709_71	1297865.APJD01000013_gene1267	3.989e-15	75.0	COG5352@1|root,COG5352@2|Bacteria,1P31N@1224|Proteobacteria,2TVRI@28211|Alphaproteobacteria,3JSR5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GcrA cell cycle regulator	-	-	-	ko:K13583	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	GcrA
SX3_k127_4759709_45	398525.KB900701_gene6401	8.372e-122	392.0	COG2932@1|root,COG2932@2|Bacteria,1R40Y@1224|Proteobacteria,2TUT0@28211|Alphaproteobacteria,3JTNV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Peptidase S24-like	MA20_34720	-	3.4.21.88	ko:K01356	-	M00729	-	-	ko00000,ko00002,ko01000,ko01002,ko03400	-	-	-	HTH_3,Peptidase_S24
SX3_k127_4759709_58	1297865.APJD01000013_gene1269	2.825e-51	182.0	29BJV@1|root,2ZYI6@2|Bacteria,1RK6K@1224|Proteobacteria,2UA1V@28211|Alphaproteobacteria,3JZJ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4759709_13	1297865.APJD01000013_gene1270	6.537e-244	754.0	COG4645@1|root,COG4645@2|Bacteria,1N1XR@1224|Proteobacteria,2TRM4@28211|Alphaproteobacteria,3JTUE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	OpgC protein	-	-	-	-	-	-	-	-	-	-	-	-	OpgC_C
SX3_k127_4759709_6	1297865.APJD01000013_gene1271	1.888e-272	840.0	COG1472@1|root,COG1472@2|Bacteria,1MVAJ@1224|Proteobacteria,2TR22@28211|Alphaproteobacteria,3JRZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glycosyl hydrolase family 3 N terminal domain	-	-	3.2.1.52	ko:K01207	ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501	M00628	R00022,R05963,R07809,R07810,R10831	RC00049	ko00000,ko00001,ko00002,ko01000	-	-	-	Glyco_hydro_3
SX3_k127_4759709_73	443598.AUFA01000008_gene4255	8.725e-08	61.0	COG0642@1|root,COG2205@2|Bacteria,1NN66@1224|Proteobacteria,2TVIV@28211|Alphaproteobacteria,3JUH3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Domain of unknown function (DUF4173)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4173
SX3_k127_4759709_65	172088.AUGA01000008_gene1069	1.693e-29	122.0	COG0810@1|root,COG0810@2|Bacteria,1QW8M@1224|Proteobacteria,2TWSZ@28211|Alphaproteobacteria,3K6NS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Domain of unknown function (DUF4173)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4173
SX3_k127_4759709_44	1297865.APJD01000013_gene1272	4.542e-129	416.0	COG0745@1|root,COG0745@2|Bacteria,1MVCB@1224|Proteobacteria,2TVHH@28211|Alphaproteobacteria,3JUBR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	MA20_06295	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_4759709_3	1297865.APJD01000013_gene1273	0.0	1019.0	COG0642@1|root,COG2205@2|Bacteria,1NFY3@1224|Proteobacteria,2TSQR@28211|Alphaproteobacteria,3JTDH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	MA20_06300	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
SX3_k127_4759709_20	1297865.APJD01000013_gene1274	3.08e-216	672.0	COG1638@1|root,COG1638@2|Bacteria,1MVHI@1224|Proteobacteria,2TTYB@28211|Alphaproteobacteria,3JRHG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	-	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_4759709_49	1297865.APJD01000013_gene1275	3.594e-104	340.0	COG3090@1|root,COG3090@2|Bacteria,1NGAA@1224|Proteobacteria,2U49Y@28211|Alphaproteobacteria,3JWKJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporters, DctQ component	-	-	-	-	-	-	-	-	-	-	-	-	DctQ
SX3_k127_4759709_12	1297865.APJD01000013_gene1276	7.592e-260	812.0	COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2TQNK@28211|Alphaproteobacteria,3JR38@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporter, DctM component	-	-	-	-	-	-	-	-	-	-	-	-	DctM
SX3_k127_4759709_21	1297865.APJD01000013_gene1277	6.329e-209	655.0	COG1638@1|root,COG1638@2|Bacteria,1MVHI@1224|Proteobacteria,2TTYB@28211|Alphaproteobacteria,3JWG6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	-	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_4759709_7	1297865.APJD01000013_gene1278	2.811e-271	842.0	COG1804@1|root,COG1804@2|Bacteria,1MVY1@1224|Proteobacteria,2TVJ9@28211|Alphaproteobacteria,3JVVG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_4759709_27	1297865.APJD01000013_gene1279	2.158e-178	559.0	COG2301@1|root,COG2301@2|Bacteria,1MW0A@1224|Proteobacteria,2TTC0@28211|Alphaproteobacteria,3JVWX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the HpcH HpaI aldolase family	MA20_00770	-	4.1.3.34	ko:K01644	ko02020,map02020	-	R00362	RC00067,RC01118	ko00000,ko00001,ko01000	-	-	-	HpcH_HpaI
SX3_k127_4759709_50	1297865.APJD01000013_gene1280	7.175e-98	319.0	COG2030@1|root,COG2030@2|Bacteria,1MW4N@1224|Proteobacteria,2U7FW@28211|Alphaproteobacteria,3K66C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	MaoC like domain	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
SX3_k127_4759709_33	1297865.APJD01000013_gene1281	2.644e-160	507.0	COG1024@1|root,COG1024@2|Bacteria,1MWVY@1224|Proteobacteria,2TRWX@28211|Alphaproteobacteria,3JVIC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_4759709_8	1297865.APJD01000013_gene1282	8.169e-266	818.0	COG1804@1|root,COG1804@2|Bacteria,1QNB4@1224|Proteobacteria,2TS7Q@28211|Alphaproteobacteria,3JWMB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_4759709_36	1297865.APJD01000013_gene1283	3.845e-151	478.0	COG0410@1|root,COG0410@2|Bacteria,1MUR3@1224|Proteobacteria,2TSWQ@28211|Alphaproteobacteria,3JUT4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	MA20_14905	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_4759709_38	1297865.APJD01000013_gene1284	4.609e-150	494.0	COG0411@1|root,COG0411@2|Bacteria,1MX51@1224|Proteobacteria,2VEYC@28211|Alphaproteobacteria,3JVET@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	AAA domain	MA20_14910	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_4759709_22	1297865.APJD01000013_gene1285	1.305e-207	656.0	COG4177@1|root,COG4177@2|Bacteria,1N5I8@1224|Proteobacteria,2U0PT@28211|Alphaproteobacteria,3JSC7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_14915	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_4759709_28	1297865.APJD01000013_gene1286	5.236e-178	559.0	COG0559@1|root,COG0559@2|Bacteria,1Q7SN@1224|Proteobacteria,2TVPA@28211|Alphaproteobacteria,3JTH7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_14920	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_4759709_5	1297865.APJD01000013_gene1287	2.926e-280	863.0	COG0683@1|root,COG0683@2|Bacteria,1MVZR@1224|Proteobacteria,2TRRP@28211|Alphaproteobacteria,3JTVJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	MA20_14925	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_4759709_2	1297865.APJD01000013_gene1288	0.0	1028.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JU50@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_4759709_43	1297865.APJD01000013_gene1289	2.477e-133	428.0	COG1309@1|root,COG1309@2|Bacteria,1RE97@1224|Proteobacteria,2U8N9@28211|Alphaproteobacteria,3JUHH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_14935	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_4759709_35	1297865.APJD01000013_gene1290	1.339e-153	501.0	COG1028@1|root,COG1028@2|Bacteria,1R6D6@1224|Proteobacteria,2U672@28211|Alphaproteobacteria,3JS6Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_4759709_1	1297865.APJD01000013_gene1291	0.0	1354.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TRG4@28211|Alphaproteobacteria,3JSMR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	MA20_14940	-	1.14.13.84	ko:K14520	ko00363,ko01100,ko01120,map00363,map01100,map01120	-	R06892	RC01644	ko00000,ko00001,ko01000	-	-	-	FMO-like,K_oxygenase,NAD_binding_8,Pyr_redox_3
SX3_k127_4759709_41	1297865.APJD01000013_gene1292	1.939e-137	437.0	COG3917@1|root,COG3917@2|Bacteria,1R3XW@1224|Proteobacteria,2TUW5@28211|Alphaproteobacteria,3JUG8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	DSBA-like thioredoxin domain	-	-	-	-	-	-	-	-	-	-	-	-	DSBA
SX3_k127_4759709_18	1297865.APJD01000013_gene1293	1.083e-222	700.0	COG0625@1|root,COG0625@2|Bacteria,1Q9ND@1224|Proteobacteria,2TT22@28211|Alphaproteobacteria,3JX9Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_N_3
SX3_k127_4759709_4	1297865.APJD01000013_gene1294	0.0	1015.0	COG5476@1|root,COG5476@2|Bacteria,1MX4P@1224|Proteobacteria,2TUFM@28211|Alphaproteobacteria,3JV2T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MlrC C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	DUF1485,MlrC_C
SX3_k127_4759709_30	1297865.APJD01000013_gene1295	1.463e-171	543.0	COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2TRMV@28211|Alphaproteobacteria,3JUUN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	addA	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
SX3_k127_4759709_74	981369.JQMJ01000004_gene3029	0.0002933	53.0	COG5434@1|root,COG5434@2|Bacteria	2|Bacteria	M	polygalacturonase activity	-	-	-	-	-	-	-	-	-	-	-	-	Beta_helix,CBM_6,F5_F8_type_C,Pectate_lyase_3
SX3_k127_4759709_23	1297865.APJD01000006_gene4766	1.34e-201	628.0	COG2141@1|root,COG2141@2|Bacteria,1MX64@1224|Proteobacteria,2VEY3@28211|Alphaproteobacteria,3JXZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_4769799_6	1297865.APJD01000011_gene6695	5.295e-54	189.0	COG2141@1|root,COG2141@2|Bacteria,1N899@1224|Proteobacteria,2TTZ7@28211|Alphaproteobacteria,3JT2F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_21690	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_4769799_7	1230476.C207_03149	6.64e-33	128.0	2BJHE@1|root,3166C@2|Bacteria,1NGHU@1224|Proteobacteria,2UKI8@28211|Alphaproteobacteria,3K25F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3551)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3551
SX3_k127_4769799_0	1297865.APJD01000011_gene6694	0.0	1013.0	COG1807@1|root,COG1807@2|Bacteria,1NAG4@1224|Proteobacteria,2U4AD@28211|Alphaproteobacteria,3JX5T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Alg9-like mannosyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_22
SX3_k127_4769799_4	1297865.APJD01000011_gene6693	4.763e-121	391.0	COG0350@1|root,COG0350@2|Bacteria,1R5DM@1224|Proteobacteria,2U0QE@28211|Alphaproteobacteria,3JTC0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	6-O-methylguanine DNA methyltransferase, DNA binding domain	ogt2	-	2.1.1.63	ko:K00567	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_binding_1
SX3_k127_4769799_3	1297865.APJD01000011_gene6692	1.775e-184	576.0	COG2207@1|root,COG2207@2|Bacteria,1QKC9@1224|Proteobacteria,2TSD8@28211|Alphaproteobacteria,3JTI2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	MA20_22305	-	-	ko:K07506	-	-	-	-	ko00000,ko03000	-	-	-	AraC_binding,HTH_18
SX3_k127_4769799_5	1297865.APJD01000011_gene6691	5.883e-73	252.0	COG0346@1|root,COG0346@2|Bacteria,1RDNZ@1224|Proteobacteria,2U7TK@28211|Alphaproteobacteria,3JYP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	MA20_22310	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_4769799_1	1297865.APJD01000011_gene6690	3.872e-304	934.0	COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,2TSMQ@28211|Alphaproteobacteria,3JT42@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MatE	-	-	-	-	-	-	-	-	-	-	-	-	MatE
SX3_k127_4769799_2	1297865.APJD01000011_gene6689	8.319e-233	721.0	28JJ3@1|root,2Z9C7@2|Bacteria,1R3Y0@1224|Proteobacteria,2U0DT@28211|Alphaproteobacteria,3JSF4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_22330	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4812919_2	1230476.C207_06792	7.577e-148	479.0	COG0001@1|root,COG0001@2|Bacteria,1MUY5@1224|Proteobacteria,2TT6G@28211|Alphaproteobacteria,3JWEQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Aminotransferase class-III	-	-	5.4.3.8	ko:K01845	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02272	RC00677	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
SX3_k127_4812919_0	1297865.APJD01000005_gene3997	7.657e-314	963.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JS1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	puuC	-	1.2.1.3,1.2.1.99	ko:K00128,ko:K09472	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135,M00136	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R07417,R07418,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_4812919_1	1297865.APJD01000005_gene3996	2.28e-262	811.0	COG5441@1|root,COG5441@2|Bacteria,1MX45@1224|Proteobacteria,2TUHA@28211|Alphaproteobacteria,3JVPF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein family (UPF0261)	-	-	-	-	-	-	-	-	-	-	-	-	UPF0261
SX3_k127_481815_3	1297865.APJD01000001_gene5981	8.523e-91	300.0	COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,2TRX2@28211|Alphaproteobacteria,3JSGG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs	rne	-	3.1.26.12	ko:K08300	ko03018,map03018	M00394	-	-	ko00000,ko00001,ko00002,ko01000,ko03009,ko03019	-	-	-	RNase_E_G,S1
SX3_k127_481815_0	1297865.APJD01000001_gene5982	5.041e-277	851.0	COG0665@1|root,COG0665@2|Bacteria,1MVIZ@1224|Proteobacteria,2TSQI@28211|Alphaproteobacteria,3JRWR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	MA20_29210	-	1.4.5.1	ko:K00285	ko00360,map00360	-	R01374,R09493	RC00006,RC00025	ko00000,ko00001,ko01000	-	-	-	DAO
SX3_k127_481815_1	1297865.APJD01000001_gene5983	1.223e-274	846.0	COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,2TRET@28211|Alphaproteobacteria,3JQXY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate	-	-	-	ko:K11103	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.23.1.3,2.A.23.1.6,2.A.23.1.7	-	-	SDF
SX3_k127_481815_2	1297865.APJD01000001_gene5984	4.912e-239	739.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2TS06@28211|Alphaproteobacteria,3JRRH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class I and II	aspB	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2
SX3_k127_4829925_4	1297865.APJD01000003_gene6497	5.181e-130	421.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JQP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	fct	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,STN,TonB_dep_Rec
SX3_k127_4829925_5	1297865.APJD01000003_gene6499	9.04e-120	388.0	COG1309@1|root,COG1309@2|Bacteria,1NNEM@1224|Proteobacteria,2UPQ5@28211|Alphaproteobacteria,3K2ZG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_4829925_1	1297865.APJD01000003_gene6500	2.4e-257	794.0	COG2141@1|root,COG2141@2|Bacteria,1R54E@1224|Proteobacteria,2TUQW@28211|Alphaproteobacteria,3JVCE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_4829925_3	1110502.TMO_2033	8.951e-142	456.0	COG1024@1|root,COG1024@2|Bacteria,1Q51H@1224|Proteobacteria,2TUPH@28211|Alphaproteobacteria,2JT9Q@204441|Rhodospirillales	204441|Rhodospirillales	I	Enoyl-CoA hydratase/isomerase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_4829925_2	1297865.APJD01000003_gene6502	1.908e-180	565.0	COG1024@1|root,COG1024@2|Bacteria,1P4F2@1224|Proteobacteria,2U383@28211|Alphaproteobacteria,3JVQF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_4829925_0	1297865.APJD01000003_gene6503	0.0	1261.0	COG1022@1|root,COG1022@2|Bacteria,1MU4D@1224|Proteobacteria,2TTX0@28211|Alphaproteobacteria,3JWV6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	AMP-binding enzyme	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding
SX3_k127_4847664_6	1297865.APJD01000006_gene4442	6.044e-23	97.0	28HAQ@1|root,2Z7N0@2|Bacteria,1N5R2@1224|Proteobacteria,2TSE5@28211|Alphaproteobacteria,3JWU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF2157
SX3_k127_4847664_0	1297865.APJD01000006_gene4443	1.097e-293	902.0	COG1593@1|root,COG1593@2|Bacteria,1MUQE@1224|Proteobacteria,2TSSE@28211|Alphaproteobacteria,3JR24@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Malonyl-CoA decarboxylase	MA20_01120	-	4.1.1.9	ko:K01578	ko00410,ko00640,ko01100,ko04146,ko04152,map00410,map00640,map01100,map04146,map04152	-	R00233	RC00040	ko00000,ko00001,ko01000	-	-	-	MCD,MCD_N
SX3_k127_4847664_4	1230476.C207_05705	3.697e-158	500.0	COG1917@1|root,COG2207@1|root,COG1917@2|Bacteria,COG2207@2|Bacteria,1P1FH@1224|Proteobacteria,2TRGB@28211|Alphaproteobacteria,3JRPR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AraC-like ligand binding domain	MA20_01125	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,HTH_18
SX3_k127_4847664_2	1230476.C207_05704	2.073e-239	745.0	COG2271@1|root,COG2271@2|Bacteria,1NJTU@1224|Proteobacteria,2TUBJ@28211|Alphaproteobacteria,3JU19@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	MA20_01130	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_4847664_5	1297865.APJD01000006_gene4446	2.712e-154	493.0	COG0834@1|root,COG0834@2|Bacteria,1N2RR@1224|Proteobacteria,2U0AF@28211|Alphaproteobacteria,3JUWS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
SX3_k127_4847664_3	1297865.APJD01000006_gene4447	8.241e-170	541.0	COG2116@1|root,COG2116@2|Bacteria,1MU0W@1224|Proteobacteria,2TTIW@28211|Alphaproteobacteria,3JRBF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Formate/nitrite transporter	MA20_17080	-	-	-	-	-	-	-	-	-	-	-	Form_Nir_trans
SX3_k127_4847664_1	1297865.APJD01000006_gene4448	1.715e-243	754.0	COG0515@1|root,COG0631@1|root,COG0515@2|Bacteria,COG0631@2|Bacteria,1MV1P@1224|Proteobacteria,2TQTS@28211|Alphaproteobacteria,3JQUJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KLT	Serine/threonine phosphatases, family 2C, catalytic domain	MA20_17085	-	-	-	-	-	-	-	-	-	-	-	PP2C_2,Pkinase
SX3_k127_4849523_4	1297865.APJD01000014_gene910	8.263e-132	420.0	COG1807@1|root,COG1807@2|Bacteria,1P6JE@1224|Proteobacteria,2TV39@28211|Alphaproteobacteria,3JQTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	MA20_09520	-	-	-	-	-	-	-	-	-	-	-	PMT_2
SX3_k127_4849523_3	1297865.APJD01000014_gene909	2.043e-154	488.0	COG4312@1|root,COG4312@2|Bacteria,1QIBA@1224|Proteobacteria,2TTFP@28211|Alphaproteobacteria,3JWSK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF899)	-	-	-	-	-	-	-	-	-	-	-	-	DUF899
SX3_k127_4849523_0	1297865.APJD01000014_gene908	1.147e-238	743.0	28NMJ@1|root,2ZBN2@2|Bacteria,1MV0D@1224|Proteobacteria,2TSST@28211|Alphaproteobacteria,3JVKW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2778)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2778
SX3_k127_4849523_1	1331060.RLDS_22015	7.395e-173	550.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,2K3GM@204457|Sphingomonadales	204457|Sphingomonadales	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_4849523_2	1297865.APJD01000014_gene906	9.04e-158	503.0	COG0388@1|root,COG0388@2|Bacteria,1MWQG@1224|Proteobacteria,2TYHX@28211|Alphaproteobacteria,3JTNQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carbon-nitrogen hydrolase	-	-	3.5.5.7	ko:K01502	ko00643,ko01120,map00643,map01120	-	R05358	RC01336	ko00000,ko00001,ko01000	-	-	-	CN_hydrolase
SX3_k127_4849523_5	1297865.APJD01000014_gene905	8.263e-109	360.0	COG0583@1|root,COG0583@2|Bacteria,1MWVB@1224|Proteobacteria,2TQXV@28211|Alphaproteobacteria,3JTSJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_4863871_18	1297865.APJD01000003_gene6443	7.447e-45	162.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TSC5@28211|Alphaproteobacteria,3K382@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ATPases associated with a variety of cellular activities	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
SX3_k127_4863871_8	1297865.APJD01000003_gene6442	2.841e-161	515.0	COG0842@1|root,COG0842@2|Bacteria,1MUF4@1224|Proteobacteria,2TRTS@28211|Alphaproteobacteria,3K355@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC-2 type transporter	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
SX3_k127_4863871_0	1297865.APJD01000003_gene6441	0.0	1004.0	COG1541@1|root,COG1541@2|Bacteria,1QA9A@1224|Proteobacteria,2V90P@28211|Alphaproteobacteria,3JYDN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)	-	-	6.2.1.30	ko:K01912	ko00360,ko01120,ko05111,map00360,map01120,map05111	-	R02539	RC00004,RC00014	ko00000,ko00001,ko01000	-	-	-	-
SX3_k127_4863871_15	1297865.APJD01000003_gene6440	8.706e-66	227.0	2BTAI@1|root,32NG2@2|Bacteria,1RCZ2@1224|Proteobacteria,2U8J9@28211|Alphaproteobacteria,3JYZ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4863871_10	1297865.APJD01000003_gene6439	2.199e-148	472.0	COG0546@1|root,COG0546@2|Bacteria,1QUWZ@1224|Proteobacteria,2TWR6@28211|Alphaproteobacteria,3JX8U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	HAD_2
SX3_k127_4863871_13	1297865.APJD01000003_gene6438	1.961e-128	413.0	COG5516@1|root,COG5516@2|Bacteria,1REGN@1224|Proteobacteria,2U1EY@28211|Alphaproteobacteria,3JVZX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative stress-induced transcription regulator	-	-	-	-	-	-	-	-	-	-	-	-	ABATE,zf-CGNR
SX3_k127_4863871_11	1297865.APJD01000003_gene6437	5.19e-141	451.0	COG1075@1|root,COG1075@2|Bacteria,1R8NM@1224|Proteobacteria,2U0Y0@28211|Alphaproteobacteria,3JVSN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_4863871_6	1297865.APJD01000003_gene6436	6.872e-195	607.0	COG0596@1|root,COG0596@2|Bacteria,1MUSF@1224|Proteobacteria,2TSK5@28211|Alphaproteobacteria,3JRAN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_4863871_14	1297865.APJD01000003_gene6435	4.04e-95	312.0	COG1942@1|root,COG1942@2|Bacteria,1RGXS@1224|Proteobacteria,2UACJ@28211|Alphaproteobacteria,3K0PF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative oxalocrotonate tautomerase enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Tautomerase,Tautomerase_3
SX3_k127_4863871_2	1230476.C207_06553	7.576e-285	877.0	COG2133@1|root,COG2133@2|Bacteria,1MVK5@1224|Proteobacteria,2TRN9@28211|Alphaproteobacteria,3JRG3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glucose / Sorbosone dehydrogenase	MA20_02000	-	-	-	-	-	-	-	-	-	-	-	GSDH
SX3_k127_4863871_16	1297865.APJD01000003_gene6433	3.107e-57	199.0	2A942@1|root,30Y85@2|Bacteria,1RI3Y@1224|Proteobacteria,2U9PZ@28211|Alphaproteobacteria,3K16H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4863871_3	1297865.APJD01000003_gene6432	1.228e-262	810.0	COG1960@1|root,COG1960@2|Bacteria,1R5A6@1224|Proteobacteria,2U0HW@28211|Alphaproteobacteria,3JVI4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_4863871_9	1297865.APJD01000003_gene6431	5.134e-159	503.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TT8N@28211|Alphaproteobacteria,3JWFS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_4863871_1	1297865.APJD01000003_gene6430	2.61e-292	899.0	COG0683@1|root,COG0683@2|Bacteria,1MV5T@1224|Proteobacteria,2TQZC@28211|Alphaproteobacteria,3JV9Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_4863871_5	1297865.APJD01000003_gene6429	7.769e-201	627.0	COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2TT26@28211|Alphaproteobacteria,3JRSE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_4863871_7	1297865.APJD01000003_gene6428	1.223e-176	555.0	COG0559@1|root,COG0559@2|Bacteria,1N54M@1224|Proteobacteria,2TTF5@28211|Alphaproteobacteria,3JT53@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_4863871_12	398525.KB900701_gene7201	7.867e-136	440.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TQK1@28211|Alphaproteobacteria,3JTA6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	-	-	-	ko:K01995,ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_4863871_4	1297865.APJD01000003_gene6426	3.175e-241	745.0	COG2141@1|root,COG2141@2|Bacteria,1PJES@1224|Proteobacteria,2U3CM@28211|Alphaproteobacteria,3JVGM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.14.14.35	ko:K17228	ko00920,map00920	-	R10203	RC02556,RC03080	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
SX3_k127_4863871_17	1297865.APJD01000003_gene6425	1.368e-56	197.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JR5S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	MA20_00470	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_4871735_14	883078.HMPREF9695_04456	9.972e-18	85.0	COG0582@1|root,COG0582@2|Bacteria,1R5SA@1224|Proteobacteria,2U4AI@28211|Alphaproteobacteria,3JU2H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_1,Phage_integrase
SX3_k127_4871735_15	1408418.JNJH01000020_gene967	4.695e-12	67.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,2TRIY@28211|Alphaproteobacteria,2JV8U@204441|Rhodospirillales	204441|Rhodospirillales	L	Recombinase zinc beta ribbon domain	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
SX3_k127_4871735_4	1230476.C207_03929	5.821e-311	953.0	COG0380@1|root,COG0380@2|Bacteria,1MUIY@1224|Proteobacteria,2TQMP@28211|Alphaproteobacteria,3JUU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor	otsA	-	2.4.1.15,2.4.1.347	ko:K00697	ko00500,ko01100,map00500,map01100	-	R02737	RC00005,RC00049,RC02748	ko00000,ko00001,ko01000,ko01003	-	GT20	-	Glyco_transf_20
SX3_k127_4871735_8	1297865.APJD01000021_gene3024	1.411e-177	556.0	COG1877@1|root,COG1877@2|Bacteria,1RGY2@1224|Proteobacteria,2U9NF@28211|Alphaproteobacteria,3JS8I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Removes the phosphate from trehalose 6-phosphate to produce free trehalose	otsB	-	3.1.3.12	ko:K01087	ko00500,ko01100,map00500,map01100	-	R02778	RC00017	ko00000,ko00001,ko01000	-	-	-	Trehalose_PPase
SX3_k127_4871735_3	1297865.APJD01000021_gene3025	3.049e-311	960.0	COG0477@1|root,COG2814@2|Bacteria,1MVKJ@1224|Proteobacteria,2TUK5@28211|Alphaproteobacteria,3JQXB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	MA20_39450	-	-	-	-	-	-	-	-	-	-	-	Sugar_tr
SX3_k127_4871735_1	1297865.APJD01000021_gene3026	0.0	1152.0	COG0840@1|root,COG2770@1|root,COG0840@2|Bacteria,COG2770@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSI9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	chemotaxis	MA20_39440	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal
SX3_k127_4871735_6	1297865.APJD01000021_gene3027	9.11e-255	786.0	COG3287@1|root,COG3287@2|Bacteria,1MVUZ@1224|Proteobacteria,2TRRI@28211|Alphaproteobacteria,3JSSM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FIST_C	-	-	-	-	-	-	-	-	-	-	-	-	FIST,FIST_C
SX3_k127_4871735_5	1297865.APJD01000021_gene3028	1.294e-280	874.0	COG0642@1|root,COG0745@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,2TR1M@28211|Alphaproteobacteria,3JQQ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,Response_reg
SX3_k127_4871735_10	1297865.APJD01000021_gene3029	1.202e-161	510.0	COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,2U06A@28211|Alphaproteobacteria,3JWKG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_4871735_11	1297865.APJD01000021_gene3030	8.226e-136	434.0	COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,2U06A@28211|Alphaproteobacteria,3JWK9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_4871735_7	1297865.APJD01000021_gene3031	8.813e-249	778.0	COG0834@1|root,COG2010@1|root,COG0834@2|Bacteria,COG2010@2|Bacteria,1MVR7@1224|Proteobacteria,2TVH7@28211|Alphaproteobacteria,3JRDC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CET	Bacterial periplasmic substrate-binding proteins	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3,SBP_bac_3
SX3_k127_4871735_0	1297865.APJD01000021_gene3032	0.0	1200.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3JRZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	-	-	-	-	-	-	-	-	-	-	-	-	PQQ
SX3_k127_4871735_12	1230476.C207_03919	1.194e-101	331.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U5BM@28211|Alphaproteobacteria,3JSU8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	coxS	-	1.2.5.3	ko:K03518	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Fer2,Fer2_2
SX3_k127_4871735_9	172088.AUGA01000013_gene7422	7.858e-177	554.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,3JR85@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	coxL	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_4871735_2	1297865.APJD01000021_gene3034	0.0	1000.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,3JR85@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	coxL	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_4871735_13	1297865.APJD01000021_gene3035	4.265e-86	291.0	COG1319@1|root,COG1319@2|Bacteria,1MUDB@1224|Proteobacteria,2TRA8@28211|Alphaproteobacteria,3JRWD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CO dehydrogenase flavoprotein C-terminal domain	cutM	-	1.2.5.3	ko:K03519	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
SX3_k127_4874111_0	1297865.APJD01000047_gene4809	0.0	1165.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,3JRJ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter	MA20_07905	-	-	ko:K06147,ko:K11085	ko02010,map02010	-	-	-	ko00000,ko00001,ko01000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_4874111_2	1297865.APJD01000047_gene4808	7.89e-218	676.0	COG1087@1|root,COG1087@2|Bacteria,1MUHI@1224|Proteobacteria,2TTC7@28211|Alphaproteobacteria,3JVFI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the NAD(P)-dependent epimerase dehydratase family	galE	-	5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase
SX3_k127_4874111_1	1297865.APJD01000047_gene4807	4.016e-223	693.0	COG0438@1|root,COG0438@2|Bacteria,1MU9C@1224|Proteobacteria,2TQJM@28211|Alphaproteobacteria,3JVRT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	lpcC	-	-	ko:K12989	-	-	-	-	ko00000,ko01000,ko01003,ko01005	-	GT4	-	Glycos_transf_1
SX3_k127_4874111_4	1298867.AUES01000033_gene2134	1.338e-175	581.0	COG0859@1|root,COG0859@2|Bacteria,1MXA2@1224|Proteobacteria,2TSXD@28211|Alphaproteobacteria,3JU3C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyltransferase family 9 (heptosyltransferase)	rfaF	-	-	ko:K02843	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT9	-	Glyco_transf_9
SX3_k127_4874111_6	1230476.C207_01313	4.62e-16	79.0	COG0859@1|root,COG0859@2|Bacteria,1MXA2@1224|Proteobacteria,2TSXD@28211|Alphaproteobacteria,3JU3C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyltransferase family 9 (heptosyltransferase)	rfaF	-	-	ko:K02843	ko00540,ko01100,map00540,map01100	M00080	-	-	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT9	-	Glyco_transf_9
SX3_k127_4874111_3	1297865.APJD01000047_gene4805	5.511e-206	644.0	COG0451@1|root,COG0451@2|Bacteria,1MVE4@1224|Proteobacteria,2TQJI@28211|Alphaproteobacteria,3JU88@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose	hldD	-	5.1.3.2,5.1.3.20	ko:K01784,ko:K03274	ko00052,ko00520,ko00540,ko01100,map00052,map00520,map00540,map01100	M00064,M00361,M00362,M00632	R00291,R02984,R05176	RC00289,RC01291	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase
SX3_k127_4874111_5	1297865.APJD01000047_gene4804	3.722e-83	276.0	COG0615@1|root,COG2870@1|root,COG0615@2|Bacteria,COG2870@2|Bacteria,1MV3Z@1224|Proteobacteria,2TU12@28211|Alphaproteobacteria,3JSR3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose	hldE	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0019200,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046835,GO:0071704	2.7.1.167,2.7.7.70	ko:K03272	ko00540,ko01100,map00540,map01100	M00064	R05644,R05646	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	CTP_transf_like,PfkB
SX3_k127_488450_4	883078.HMPREF9695_03869	1.027e-95	314.0	COG3846@1|root,COG3846@2|Bacteria,1MVFD@1224|Proteobacteria,2TSHU@28211|Alphaproteobacteria,3JS5M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PFAM TrbL VirB6 plasmid conjugal transfer protein	-	-	-	ko:K07344	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	TrbL
SX3_k127_488450_6	1297865.APJD01000035_gene5432	2.429e-77	260.0	2CZAK@1|root,32T5X@2|Bacteria,1MZIQ@1224|Proteobacteria,2UBVN@28211|Alphaproteobacteria,3JYE7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_488450_3	883078.HMPREF9695_03871	9.943e-145	461.0	COG5314@1|root,COG5314@2|Bacteria,1MW5A@1224|Proteobacteria,2TSW2@28211|Alphaproteobacteria,3JRKE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	transfer protein trbJ	-	-	-	ko:K20266	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	-
SX3_k127_488450_0	883078.HMPREF9695_03872	0.0	1647.0	COG3451@1|root,COG3451@2|Bacteria,1MXH0@1224|Proteobacteria,2TR1U@28211|Alphaproteobacteria,3JRFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	component of type IV transporter system	-	-	-	ko:K20530	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	CagE_TrbE_VirB
SX3_k127_488450_7	266835.14028212	1.699e-64	223.0	COG5268@1|root,COG5268@2|Bacteria,1MZ8D@1224|Proteobacteria,2UBWQ@28211|Alphaproteobacteria,43KA7@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	NU	Type IV secretory pathway, VirB3-like protein	-	-	-	ko:K20529	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	VirB3
SX3_k127_488450_2	883078.HMPREF9695_03875	1.544e-196	615.0	COG4962@1|root,COG4962@2|Bacteria,1R7EN@1224|Proteobacteria,2TTUS@28211|Alphaproteobacteria,3JTN4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TIGRFAM P-type conjugative transfer ATPase TrbB	trbB	-	-	ko:K20527	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	T2SSE
SX3_k127_488450_10	1028801.RG1141_PA10510	5.42e-17	81.0	COG3967@1|root,COG3967@2|Bacteria,1QSYJ@1224|Proteobacteria,2U29W@28211|Alphaproteobacteria,4BM5E@82115|Rhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	ko:K14189	-	-	-	-	ko00000,ko01000	-	-	-	adh_short
SX3_k127_488450_1	883078.HMPREF9695_03879	0.0	1127.0	COG1914@1|root,COG1914@2|Bacteria,1N0XH@1224|Proteobacteria,2VG5I@28211|Alphaproteobacteria,3JU6A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Nramp
SX3_k127_4892379_3	1297865.APJD01000007_gene2319	6.057e-105	341.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,3JQZ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter transmembrane region	MA20_17385	-	-	ko:K06147,ko:K18893	ko02010,map02010	-	-	-	ko00000,ko00001,ko02000	3.A.1,3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_4892379_0	1297865.APJD01000007_gene2320	0.0	1500.0	COG3408@1|root,COG3408@2|Bacteria,1MUYU@1224|Proteobacteria,2TQK2@28211|Alphaproteobacteria,3JSVR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	N-terminal domain of (some) glycogen debranching enzymes	MA20_17380	-	-	-	-	-	-	-	-	-	-	-	Bac_rhamnosid6H,GDE_C,GDE_N_bis
SX3_k127_4892379_4	1297865.APJD01000007_gene2321	5.542e-93	307.0	COG3861@1|root,COG3861@2|Bacteria,1R6C3@1224|Proteobacteria,2UDUU@28211|Alphaproteobacteria,3JU9P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
SX3_k127_4892379_1	1297865.APJD01000007_gene2322	7.23e-248	769.0	COG0477@1|root,COG2814@2|Bacteria,1N8TD@1224|Proteobacteria,2TTRZ@28211|Alphaproteobacteria,3JREB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major facilitator Superfamily	MA20_17370	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_4892379_2	1230476.C207_06188	1.392e-125	404.0	COG1376@1|root,COG1376@2|Bacteria,1MX14@1224|Proteobacteria,2TS68@28211|Alphaproteobacteria,3JU1F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_4916138_8	1297865.APJD01000007_gene1967	4.236e-11	63.0	COG0463@1|root,COG0463@2|Bacteria,1R4Y2@1224|Proteobacteria,2U6HZ@28211|Alphaproteobacteria,3JS8G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	glycosyl transferase	MA20_42350	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
SX3_k127_4916138_2	1297865.APJD01000007_gene1966	6.126e-198	617.0	COG0454@1|root,COG1846@1|root,COG0454@2|Bacteria,COG1846@2|Bacteria,1MWIC@1224|Proteobacteria,2TRIA@28211|Alphaproteobacteria,3JS62@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator, MarR family	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,MarR_2
SX3_k127_4916138_5	1297865.APJD01000007_gene1965	9.379e-116	373.0	COG0521@1|root,COG0521@2|Bacteria,1R9W2@1224|Proteobacteria,2TTA8@28211|Alphaproteobacteria,3JUQ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	May be involved in the biosynthesis of molybdopterin	moaB	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0042802,GO:0044424,GO:0044444,GO:0044464	2.7.7.75	ko:K03638	ko00790,ko01100,map00790,map01100	-	R09726	RC00002	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth
SX3_k127_4916138_1	1297865.APJD01000007_gene1964	1.476e-202	631.0	COG2321@1|root,COG2321@2|Bacteria,1MU4U@1224|Proteobacteria,2TRCS@28211|Alphaproteobacteria,3JRCW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative neutral zinc metallopeptidase	-	-	-	ko:K07054	-	-	-	-	ko00000	-	-	-	Zn_peptidase
SX3_k127_4916138_0	1230476.C207_00364	4.004e-247	763.0	COG2189@1|root,COG2189@2|Bacteria,1MX9M@1224|Proteobacteria,2TSW9@28211|Alphaproteobacteria,3JT5A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the N(4) N(6)-methyltransferase family	ccrM	-	2.1.1.72	ko:K13581	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko02048	-	-	-	N6_N4_Mtase
SX3_k127_4916138_4	1297865.APJD01000007_gene1962	2.782e-149	475.0	COG0625@1|root,COG0625@2|Bacteria,1MW27@1224|Proteobacteria,2TUK1@28211|Alphaproteobacteria,3JTJI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	MA20_42385	-	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_4916138_6	1297865.APJD01000007_gene1960	4.432e-92	304.0	COG3631@1|root,COG3631@2|Bacteria,1RACS@1224|Proteobacteria,2U5CN@28211|Alphaproteobacteria,3JYBQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	ko:K06893	-	-	-	-	ko00000	-	-	-	SnoaL_2
SX3_k127_4916138_3	1297865.APJD01000007_gene1959	1.68e-190	597.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2TRAK@28211|Alphaproteobacteria,3JUEZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	MA20_42410	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_4924942_14	1297865.APJD01000014_gene883	2.033e-124	402.0	COG1058@1|root,COG1058@2|Bacteria,1MVG6@1224|Proteobacteria,2TU5C@28211|Alphaproteobacteria,3JR92@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Probable molybdopterin binding domain	cinA1	-	-	-	-	-	-	-	-	-	-	-	MoCF_biosynth
SX3_k127_4924942_4	1297865.APJD01000014_gene884	5.462e-311	960.0	COG2308@1|root,COG2308@2|Bacteria,1MUAD@1224|Proteobacteria,2TRI7@28211|Alphaproteobacteria,3JTT7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	A circularly permuted ATPgrasp	MA20_32420	-	-	-	-	-	-	-	-	-	-	-	CP_ATPgrasp_2
SX3_k127_4924942_8	1297865.APJD01000014_gene885	4.24e-205	642.0	COG2307@1|root,COG2307@2|Bacteria,1MVZK@1224|Proteobacteria,2TQUM@28211|Alphaproteobacteria,3JRZN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	A predicted alpha-helical domain with a conserved ER motif.	MA20_32425	-	-	-	-	-	-	-	-	-	-	-	Alpha-E
SX3_k127_4924942_10	1297865.APJD01000014_gene886	9.605e-186	580.0	COG1305@1|root,COG1305@2|Bacteria,1MVMI@1224|Proteobacteria,2TTZY@28211|Alphaproteobacteria,3JS6U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial transglutaminase-like N-terminal region	MA20_32430	-	-	-	-	-	-	-	-	-	-	-	Bact_transglu_N,Transglut_core
SX3_k127_4924942_18	1297865.APJD01000014_gene887	6.473e-86	285.0	COG0599@1|root,COG0599@2|Bacteria,1QW4R@1224|Proteobacteria,2TWMM@28211|Alphaproteobacteria,3JY4B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	MA20_32440	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_4924942_0	1297865.APJD01000014_gene888	0.0	1092.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TSQK@28211|Alphaproteobacteria,3JXVF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_5
SX3_k127_4924942_12	1297865.APJD01000014_gene889	2.662e-157	516.0	COG3484@1|root,COG3484@2|Bacteria,1N057@1224|Proteobacteria,2U09K@28211|Alphaproteobacteria,3JRRE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Proteasome-type protease	MA20_32445	-	-	ko:K07395	-	-	-	-	ko00000	-	-	-	Proteasome
SX3_k127_4924942_11	1297865.APJD01000014_gene890	5.933e-161	507.0	COG4221@1|root,COG4221@2|Bacteria,1MWXS@1224|Proteobacteria,2TQYY@28211|Alphaproteobacteria,3JSBD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_32450	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_4924942_6	1297865.APJD01000014_gene891	1.144e-239	766.0	COG0477@1|root,COG0477@2|Bacteria,1MXZ3@1224|Proteobacteria,2TWH9@28211|Alphaproteobacteria,3JTH3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Transmembrane secretion effector	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,MFS_3
SX3_k127_4924942_5	1297865.APJD01000014_gene892	1.268e-252	782.0	COG1972@1|root,COG1972@2|Bacteria,1MXXX@1224|Proteobacteria,2TU8A@28211|Alphaproteobacteria,3JUMX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Na+ dependent nucleoside transporter C-terminus	MA20_32460	-	-	ko:K03317	-	-	-	-	ko00000	2.A.41	-	-	Gate,Nucleos_tra2_C,Nucleos_tra2_N
SX3_k127_4924942_25	224911.27354970	0.0005693	43.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_4924942_16	1297865.APJD01000014_gene893	3.071e-110	359.0	COG1917@1|root,COG1917@2|Bacteria,1NNBT@1224|Proteobacteria,2U1PR@28211|Alphaproteobacteria,3JR2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin 2, conserved barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_4924942_22	196490.AUEZ01000056_gene1008	5.837e-57	199.0	COG5425@1|root,COG5425@2|Bacteria,1N08I@1224|Proteobacteria,2UBVR@28211|Alphaproteobacteria,3JZGZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Usg-like family	MA20_32470	-	-	-	-	-	-	-	-	-	-	-	Usg
SX3_k127_4924942_21	1230476.C207_00582	1.155e-60	209.0	COG0234@1|root,COG0234@2|Bacteria,1MZ2X@1224|Proteobacteria,2U9AQ@28211|Alphaproteobacteria,3JZHN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	groS	-	-	ko:K04078	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	Cpn10
SX3_k127_4924942_2	1297865.APJD01000014_gene896	0.0	1029.0	COG0459@1|root,COG0459@2|Bacteria,1MURR@1224|Proteobacteria,2TS07@28211|Alphaproteobacteria,3JTI3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	groL	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220	-	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	-	-	-	Cpn60_TCP1
SX3_k127_4924942_23	316055.RPE_2281	4.251e-43	158.0	COG2827@1|root,COG2827@2|Bacteria,1MZME@1224|Proteobacteria,2UCNX@28211|Alphaproteobacteria,3JZIP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Excinuclease ABC, C subunit	-	-	-	ko:K07461	-	-	-	-	ko00000	-	-	-	GIY-YIG
SX3_k127_4924942_7	1297865.APJD01000014_gene897	1.964e-238	742.0	COG0330@1|root,COG0330@2|Bacteria,1MWMD@1224|Proteobacteria,2U4RG@28211|Alphaproteobacteria,3JRX7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	prohibitin homologues	-	-	-	-	-	-	-	-	-	-	-	-	Band_7
SX3_k127_4924942_20	1297865.APJD01000014_gene898	6.538e-62	213.0	COG0583@1|root,COG0583@2|Bacteria,1NSX7@1224|Proteobacteria,2U12F@28211|Alphaproteobacteria,3JQRC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_4924942_17	1297865.APJD01000014_gene898	3.59e-109	353.0	COG0583@1|root,COG0583@2|Bacteria,1NSX7@1224|Proteobacteria,2U12F@28211|Alphaproteobacteria,3JQRC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_4924942_15	1297865.APJD01000014_gene899	1.069e-117	382.0	COG1335@1|root,COG1335@2|Bacteria,1RDHA@1224|Proteobacteria,2U71S@28211|Alphaproteobacteria,3JUB2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
SX3_k127_4924942_13	1297865.APJD01000014_gene900	2.472e-125	416.0	COG0625@1|root,COG0625@2|Bacteria,1Q9UI@1224|Proteobacteria,2TTAF@28211|Alphaproteobacteria,3JV96@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_N_2,GST_N_3
SX3_k127_4924942_3	1297865.APJD01000014_gene901	0.0	1002.0	COG0775@1|root,COG0775@2|Bacteria,1MUMQ@1224|Proteobacteria,2TSX1@28211|Alphaproteobacteria,3JTM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations	amn	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008714,GO:0016787,GO:0016798,GO:0016799,GO:0044424,GO:0044444,GO:0044464	3.2.2.4	ko:K01241	ko00230,map00230	-	R00182	RC00063,RC00318	ko00000,ko00001,ko01000	-	-	-	AMNp_N,PNP_UDP_1
SX3_k127_4924942_19	1297865.APJD01000014_gene902	3.617e-75	254.0	COG3564@1|root,COG3564@2|Bacteria,1RGYH@1224|Proteobacteria,2U9NU@28211|Alphaproteobacteria,3JYT2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF779)	-	-	-	ko:K09959	-	-	-	-	ko00000	-	-	-	DUF779
SX3_k127_4924942_1	1297865.APJD01000014_gene903	0.0	1037.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JRV1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	aldB	-	-	ko:K00138	ko00010,ko00620,ko01100,ko01110,ko01120,map00010,map00620,map01100,map01110,map01120	-	R00711	RC00047	ko00000,ko00001,ko01000	-	-	-	Aldedh
SX3_k127_4924942_9	1297865.APJD01000014_gene904	1.3e-195	611.0	COG3284@1|root,COG3284@2|Bacteria,1MVRZ@1224|Proteobacteria,2TSRW@28211|Alphaproteobacteria,3JRH1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KQ	Bacterial regulatory protein, Fis family	acoR	-	-	ko:K21405	-	-	-	-	ko00000,ko03000	-	-	-	GAF,HTH_8
SX3_k127_4943528_5	1297865.APJD01000003_gene6460	8.718e-151	477.0	COG0025@1|root,COG0025@2|Bacteria,1MW5T@1224|Proteobacteria,2TSHB@28211|Alphaproteobacteria,3JUQI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sodium/hydrogen exchanger family	MA20_20950	-	-	ko:K03316	-	-	-	-	ko00000	2.A.36	-	-	Na_H_Exchanger
SX3_k127_4943528_4	1297865.APJD01000003_gene6459	1.688e-163	518.0	COG1028@1|root,COG1028@2|Bacteria,1MUFX@1224|Proteobacteria,2TRWN@28211|Alphaproteobacteria,3JUHZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_20960	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_4943528_7	1230476.C207_02585	5.978e-65	235.0	COG4729@1|root,COG4729@2|Bacteria,1N0MH@1224|Proteobacteria,2UBYG@28211|Alphaproteobacteria,3JYVG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1850)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1850
SX3_k127_4943528_0	1297865.APJD01000003_gene6457	0.0	1361.0	COG4666@1|root,COG4666@2|Bacteria,1MUNB@1224|Proteobacteria,2TQY9@28211|Alphaproteobacteria,3JT9R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite ATP-independent periplasmic transporter, DctM component	MA20_20970	-	-	-	-	-	-	-	-	-	-	-	DctM
SX3_k127_4943528_3	1230476.C207_02583	5.991e-188	589.0	COG2358@1|root,COG2358@2|Bacteria,1MXW1@1224|Proteobacteria,2TSK2@28211|Alphaproteobacteria,3JSVJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NMT1-like family	MA20_20975	-	-	ko:K07080	-	-	-	-	ko00000	-	-	-	NMT1_3
SX3_k127_4943528_1	398525.KB900701_gene2391	8.824e-256	790.0	COG0745@1|root,COG2200@1|root,COG0745@2|Bacteria,COG2200@2|Bacteria,1MVK8@1224|Proteobacteria,2TRIW@28211|Alphaproteobacteria,3JSTD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL
SX3_k127_4943528_2	1297865.APJD01000003_gene6454	3.502e-191	597.0	COG2301@1|root,COG2301@2|Bacteria,1QGFZ@1224|Proteobacteria,2U37X@28211|Alphaproteobacteria,3JU7S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	HpcH/HpaI aldolase/citrate lyase family	-	-	4.1.3.34	ko:K01644	ko02020,map02020	-	R00362	RC00067,RC01118	ko00000,ko00001,ko01000	-	-	-	HpcH_HpaI
SX3_k127_4943528_6	1297865.APJD01000003_gene6453	5.278e-97	323.0	2A6C8@1|root,30V52@2|Bacteria,1R7FP@1224|Proteobacteria,2U1MN@28211|Alphaproteobacteria,3JWQ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_20980	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4943528_8	1230476.C207_02580	1.522e-15	79.0	2CADU@1|root,3000A@2|Bacteria,1N2BN@1224|Proteobacteria,2UCG8@28211|Alphaproteobacteria,3K09Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4948583_4	1297865.APJD01000007_gene2246	1.218e-235	736.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,3JRAE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_4948583_9	1297865.APJD01000007_gene2247	5.517e-164	520.0	COG1173@1|root,COG1173@2|Bacteria,1MVHY@1224|Proteobacteria,2TQVQ@28211|Alphaproteobacteria,3JT76@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_4948583_6	1297865.APJD01000007_gene2248	3.633e-199	621.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TQJC@28211|Alphaproteobacteria,3JSJW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_4948583_0	1297865.APJD01000007_gene2249	0.0	1125.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TS14@28211|Alphaproteobacteria,3JW6R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_4948583_12	1297865.APJD01000007_gene2250	3.655e-52	188.0	COG0776@1|root,COG0776@2|Bacteria,1RFWH@1224|Proteobacteria,2U9D0@28211|Alphaproteobacteria,3JZCP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the bacterial histone-like protein family	hupA	-	-	-	-	-	-	-	-	-	-	-	Bac_DNA_binding
SX3_k127_4948583_10	1297865.APJD01000007_gene2251	7.542e-158	499.0	COG1028@1|root,COG1028@2|Bacteria,1NBB6@1224|Proteobacteria,2TVF5@28211|Alphaproteobacteria,3JWSV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_4948583_5	1297865.APJD01000007_gene2252	3.089e-200	631.0	COG0715@1|root,COG0715@2|Bacteria,1MV9S@1224|Proteobacteria,2TUP0@28211|Alphaproteobacteria,3JRAA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ABC transporter, phosphonate, periplasmic substrate-binding protein	-	-	-	ko:K15553	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	NMT1
SX3_k127_4948583_3	1297865.APJD01000007_gene2253	1.377e-236	732.0	COG0715@1|root,COG0715@2|Bacteria,1MW0S@1224|Proteobacteria,2TV7D@28211|Alphaproteobacteria,3JRYU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1,NMT1_2
SX3_k127_4948583_8	196490.AUEZ01000011_gene6307	4.593e-184	580.0	COG0600@1|root,COG0600@2|Bacteria,1MXRM@1224|Proteobacteria,2TSP7@28211|Alphaproteobacteria,3JQZD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_4948583_11	1179778.PMM47T1_22857	1.189e-107	368.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,1RZUK@1236|Gammaproteobacteria	1236|Gammaproteobacteria	P	(ABC) transporter	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_4948583_1	1297865.APJD01000007_gene2256	1.912e-254	786.0	COG1960@1|root,COG1960@2|Bacteria,1MW97@1224|Proteobacteria,2TUS1@28211|Alphaproteobacteria,3JRWA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_4948583_2	1297865.APJD01000007_gene2257	1.347e-237	736.0	COG2141@1|root,COG2141@2|Bacteria,1MX4E@1224|Proteobacteria,2TSGA@28211|Alphaproteobacteria,3JV02@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.14.14.5	ko:K04091	ko00920,map00920	-	R07210,R10206	RC01779,RC02556	ko00000,ko00001,ko01000	-	-	-	Bac_luciferase
SX3_k127_4948583_7	1297865.APJD01000007_gene2258	1.781e-195	610.0	COG0715@1|root,COG0715@2|Bacteria,1MV9S@1224|Proteobacteria,2TUP0@28211|Alphaproteobacteria,3JWK4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	-	-	-	ko:K15553	ko00920,ko02010,map00920,map02010	M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.17.2	-	-	NMT1,NMT1_2
SX3_k127_4954842_0	1297865.APJD01000036_gene1477	0.0	2020.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JXQU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MMPL family	-	-	-	ko:K07789	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
SX3_k127_4954842_11	1297865.APJD01000036_gene1478	9.457e-153	486.0	COG0666@1|root,COG0666@2|Bacteria	2|Bacteria	G	response to abiotic stimulus	-	-	-	ko:K06867	-	-	-	-	ko00000	-	-	-	Ank,Ank_2,Ank_4
SX3_k127_4954842_1	1297865.APJD01000036_gene1479	0.0	1202.0	COG0457@1|root,COG4249@1|root,COG0457@2|Bacteria,COG4249@2|Bacteria,1MXFD@1224|Proteobacteria,2TRW5@28211|Alphaproteobacteria,3JR0X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,Sel1,TPR_1,TPR_11,TPR_16,TPR_2,TPR_8
SX3_k127_4954842_13	1297865.APJD01000036_gene1480	7.517e-131	417.0	COG3703@1|root,COG3703@2|Bacteria,1QA7D@1224|Proteobacteria,2U7C6@28211|Alphaproteobacteria,3JSG9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides	chaC	-	-	ko:K07232	-	-	-	-	ko00000	-	-	-	ChaC
SX3_k127_4954842_3	1297865.APJD01000036_gene1481	5.948e-255	788.0	COG4093@1|root,COG4093@2|Bacteria,1MXJA@1224|Proteobacteria,2TRH7@28211|Alphaproteobacteria,3JTXX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2125)	MA20_20440	-	-	-	-	-	-	-	-	-	-	-	DUF2125
SX3_k127_4954842_2	1297865.APJD01000036_gene1482	0.0	1046.0	COG4238@1|root,COG4238@2|Bacteria,1QW4X@1224|Proteobacteria,2TSTZ@28211|Alphaproteobacteria,3JWV2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	major outer membrane lipoprotein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4954842_6	1297865.APJD01000036_gene1483	1.093e-210	656.0	COG3181@1|root,COG3181@2|Bacteria,1QU33@1224|Proteobacteria,2U3PU@28211|Alphaproteobacteria,3JSZW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	MA20_34395	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_4954842_10	1297865.APJD01000036_gene1485	3.811e-157	500.0	COG1121@1|root,COG1121@2|Bacteria,1MW47@1224|Proteobacteria,2TRJA@28211|Alphaproteobacteria,3JRGF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ABC transporter	MA20_06580	-	-	ko:K02074	-	M00244	-	-	ko00000,ko00002,ko02000	3.A.1.15	-	-	ABC_tran
SX3_k127_4954842_8	1297865.APJD01000036_gene1486	1.602e-166	538.0	COG1108@1|root,COG1108@2|Bacteria,1MVC2@1224|Proteobacteria,2TS2V@28211|Alphaproteobacteria,3JV3H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ABC 3 transport family	MA20_06575	-	-	ko:K02075	-	M00244	-	-	ko00000,ko00002,ko02000	3.A.1.15	-	-	ABC-3
SX3_k127_4954842_7	1297865.APJD01000036_gene1487	3.349e-176	570.0	COG0803@1|root,COG0803@2|Bacteria,1MVW9@1224|Proteobacteria,2TQTF@28211|Alphaproteobacteria,3JRQN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the bacterial solute-binding protein 9 family	znuA	-	-	ko:K02077,ko:K09815	ko02010,map02010	M00242,M00244	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.15,3.A.1.15.3,3.A.1.15.5	-	-	ZnuA
SX3_k127_4954842_4	1297865.APJD01000036_gene1488	5.899e-226	702.0	COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TS4B@28211|Alphaproteobacteria,3JSTE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	cobalamin synthesis protein	MA20_06565	-	-	-	-	-	-	-	-	-	-	-	CobW_C,cobW
SX3_k127_4954842_5	1297865.APJD01000036_gene1489	1.752e-222	691.0	COG2319@1|root,COG2319@2|Bacteria,1MV7S@1224|Proteobacteria,2TTNW@28211|Alphaproteobacteria,3JRPH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Anaphase-promoting complex subunit 4 WD40 domain	MA20_06560	-	-	-	-	-	-	-	-	-	-	-	ANAPC4_WD40,WD40
SX3_k127_4954842_12	1297865.APJD01000036_gene1490	1.708e-143	456.0	COG1285@1|root,COG1285@2|Bacteria,1MURJ@1224|Proteobacteria,2TT5N@28211|Alphaproteobacteria,3JSF1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MgtC family	MA20_06555	-	-	ko:K07507	-	-	-	-	ko00000,ko02000	9.B.20	-	-	MgtC
SX3_k127_4954842_14	1297865.APJD01000036_gene1491	1.047e-54	195.0	29FTD@1|root,302R3@2|Bacteria,1NDYK@1224|Proteobacteria,2UFW6@28211|Alphaproteobacteria,3K10N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4954842_9	1297865.APJD01000036_gene1492	2.77e-163	515.0	COG4689@1|root,COG4689@2|Bacteria,1N4IP@1224|Proteobacteria,2TTZX@28211|Alphaproteobacteria,3JRAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Catalyzes the conversion of acetoacetate to acetone and carbon dioxide	adc	-	4.1.1.4	ko:K01574	ko00072,ko00640,ko01100,map00072,map00640,map01100	M00088	R01366	RC00040	ko00000,ko00001,ko00002,ko01000	-	-	-	ADC
SX3_k127_4954842_15	1297865.APJD01000036_gene1493	1.383e-41	152.0	COG5310@1|root,COG5310@2|Bacteria,1MUZB@1224|Proteobacteria,2TRTR@28211|Alphaproteobacteria,3JS29@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Saccharopine dehydrogenase C-terminal domain	hss	-	2.5.1.44	ko:K00808	ko00960,ko01110,map00960,map01110	-	R00018	RC00053	ko00000,ko00001,ko01000	-	-	-	Sacchrp_dh_C,Sacchrp_dh_NADP
SX3_k127_4960323_7	1297865.APJD01000001_gene5861	1.085e-105	343.0	COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,2TV9W@28211|Alphaproteobacteria,3JWYC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Biotin-lipoyl like	-	-	-	ko:K07799	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	8.A.1	-	-	Biotin_lipoyl_2,HlyD_D23
SX3_k127_4960323_0	1297865.APJD01000001_gene5860	0.0	1963.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JWEN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MMPL family	mdtC	-	-	ko:K03296	-	-	-	-	ko00000	2.A.6.2	-	-	ACR_tran
SX3_k127_4960323_8	1230476.C207_01447	2.956e-62	216.0	COG0316@1|root,COG0316@2|Bacteria,1RHCW@1224|Proteobacteria,2UBR8@28211|Alphaproteobacteria,3JZKF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the HesB IscA family	erpA	-	-	ko:K13628,ko:K15724	-	-	-	-	ko00000,ko03016	-	-	-	Fe-S_biosyn
SX3_k127_4960323_3	1297865.APJD01000001_gene5858	8.529e-265	815.0	COG0232@1|root,COG0232@2|Bacteria,1MVQ2@1224|Proteobacteria,2TRCD@28211|Alphaproteobacteria,3JT2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the dGTPase family. Type 2 subfamily	dgt	GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576	3.1.5.1	ko:K01129	ko00230,map00230	-	R01856	RC00017	ko00000,ko00001,ko01000	-	-	-	HD,HD_assoc
SX3_k127_4960323_1	1297865.APJD01000001_gene5857	0.0	1174.0	COG0018@1|root,COG0018@2|Bacteria,1MU4J@1224|Proteobacteria,2TS3Y@28211|Alphaproteobacteria,3JUHD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Arginyl-tRNA synthetase	argS	-	6.1.1.19	ko:K01887	ko00970,map00970	M00359,M00360	R03646	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d
SX3_k127_4960323_2	1297865.APJD01000001_gene5856	6.773e-309	949.0	COG3115@1|root,COG3115@2|Bacteria,1RE0F@1224|Proteobacteria,2TWI2@28211|Alphaproteobacteria,3JTB5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Sporulation related domain	-	-	-	-	-	-	-	-	-	-	-	-	SPOR
SX3_k127_4960323_4	1297865.APJD01000001_gene5855	7.567e-216	671.0	COG1472@1|root,COG1472@2|Bacteria,1MVAJ@1224|Proteobacteria,2TRJK@28211|Alphaproteobacteria,3JRM6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glycosyl hydrolase family 3 N terminal domain	nagZ	-	3.2.1.21,3.2.1.52	ko:K01207,ko:K05349	ko00460,ko00500,ko00520,ko00531,ko00940,ko01100,ko01110,ko01501,map00460,map00500,map00520,map00531,map00940,map01100,map01110,map01501	M00628	R00022,R00026,R02558,R02887,R02985,R03527,R04949,R04998,R05963,R07809,R07810,R10035,R10039,R10040,R10831	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko00002,ko01000	-	GH3	-	Glyco_hydro_3
SX3_k127_4960323_5	1297865.APJD01000001_gene5854	1.839e-167	527.0	COG1354@1|root,COG1354@2|Bacteria,1MVCN@1224|Proteobacteria,2TS1V@28211|Alphaproteobacteria,3JR69@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves	scpA	-	-	ko:K05896	-	-	-	-	ko00000,ko03036	-	-	-	SMC_ScpA
SX3_k127_4960323_6	1230476.C207_01453	8.596e-141	452.0	COG1386@1|root,COG1386@2|Bacteria,1PUA6@1224|Proteobacteria,2TU64@28211|Alphaproteobacteria,3JUGS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves	scpB	-	-	ko:K06024	-	-	-	-	ko00000,ko03036	-	-	-	SMC_ScpB
SX3_k127_4961665_6	1297865.APJD01000018_gene5708	2e-96	315.0	COG2141@1|root,COG2141@2|Bacteria,1MUVN@1224|Proteobacteria,2TR26@28211|Alphaproteobacteria,3JUH0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_4961665_4	1297865.APJD01000018_gene5707	1.12e-173	546.0	COG1464@1|root,COG1464@2|Bacteria,1MUVY@1224|Proteobacteria,2U1JP@28211|Alphaproteobacteria,3JRQV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NLPA lipoprotein	-	-	-	ko:K02073	ko02010,map02010	M00238	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.24	-	-	Lipoprotein_9
SX3_k127_4961665_5	1297865.APJD01000018_gene5706	1.071e-161	514.0	COG1028@1|root,COG1028@2|Bacteria,1MXTP@1224|Proteobacteria,2TQST@28211|Alphaproteobacteria,3JSE8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_14035	-	1.1.1.175	ko:K22185	ko00040,map00040	-	R01429	RC00066	ko00000,ko00001,ko01000	-	-	-	adh_short_C2
SX3_k127_4961665_1	1297865.APJD01000018_gene5705	7.989e-264	814.0	COG1940@1|root,COG1940@2|Bacteria,1NFM0@1224|Proteobacteria,2U1BM@28211|Alphaproteobacteria,3JUQY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GK	ROK family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_24,MarR,MarR_2,ROK
SX3_k127_4961665_3	1297865.APJD01000018_gene5704	3.59e-196	613.0	COG1879@1|root,COG1879@2|Bacteria,1NGF2@1224|Proteobacteria,2TU2Y@28211|Alphaproteobacteria,3JT46@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding protein domain	-	-	-	ko:K10439	ko02010,ko02030,map02010,map02030	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	Peripla_BP_4
SX3_k127_4961665_0	1297865.APJD01000018_gene5703	3.356e-319	980.0	COG1129@1|root,COG1129@2|Bacteria,1MU22@1224|Proteobacteria,2TQJV@28211|Alphaproteobacteria,3JQYV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	ABC transporter	alsA	-	3.6.3.17	ko:K10441	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	ABC_tran
SX3_k127_4961665_2	1297865.APJD01000018_gene5702	1.356e-201	657.0	COG1172@1|root,COG1172@2|Bacteria,1MX7D@1224|Proteobacteria,2TT59@28211|Alphaproteobacteria,3JTZQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Branched-chain amino acid transport system / permease component	-	-	-	ko:K10440	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	BPD_transp_2
SX3_k127_4961665_7	1230476.C207_00135	6.288e-68	233.0	COG3659@1|root,COG3659@2|Bacteria,1QMC3@1224|Proteobacteria,2U3KG@28211|Alphaproteobacteria,3JWJ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Carbohydrate-selective porin, OprB family	-	-	-	ko:K07267	-	-	-	-	ko00000,ko02000	1.B.19.1	-	-	OprB
SX3_k127_4963808_1	1297865.APJD01000007_gene2272	6.819e-243	751.0	COG1804@1|root,COG1804@2|Bacteria,1NSWZ@1224|Proteobacteria,2U2UE@28211|Alphaproteobacteria,3JWDN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_4963808_0	1297865.APJD01000007_gene2271	1.681e-318	975.0	COG0402@1|root,COG0402@2|Bacteria,1MVPA@1224|Proteobacteria,2TSZ0@28211|Alphaproteobacteria,3JU0S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1
SX3_k127_4963808_2	398525.KB900701_gene3424	8.539e-208	664.0	COG0715@1|root,COG0715@2|Bacteria,1MW53@1224|Proteobacteria,2TSHF@28211|Alphaproteobacteria,3JQZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1/THI5 like	MA20_26695	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
SX3_k127_4963808_3	1297865.APJD01000007_gene2269	3.495e-159	505.0	COG0600@1|root,COG0600@2|Bacteria,1MVAE@1224|Proteobacteria,2TSAS@28211|Alphaproteobacteria,3JVMN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_26690	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_4963808_4	1297865.APJD01000007_gene2268	6.772e-146	462.0	COG1116@1|root,COG1116@2|Bacteria,1P4HB@1224|Proteobacteria,2TUY9@28211|Alphaproteobacteria,3JR2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	MA20_26685	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_498038_2	1297865.APJD01000024_gene382	8.327e-112	363.0	COG1309@1|root,COG1309@2|Bacteria,1PXRI@1224|Proteobacteria,2TSE8@28211|Alphaproteobacteria,3JWS6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_11,TetR_N
SX3_k127_498038_6	1297865.APJD01000024_gene383	5.78e-31	125.0	2AG3Z@1|root,3168K@2|Bacteria,1NGRZ@1224|Proteobacteria,2UNG3@28211|Alphaproteobacteria,3K1SH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_498038_4	1297865.APJD01000024_gene384	4.108e-85	287.0	29N28@1|root,308ZZ@2|Bacteria,1RM77@1224|Proteobacteria,2UB1Q@28211|Alphaproteobacteria,3JZF8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_498038_3	1297865.APJD01000024_gene385	5.81e-91	299.0	COG1917@1|root,COG1917@2|Bacteria,1RH1R@1224|Proteobacteria,2UBCW@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Cupin 2, conserved barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_498038_0	1297865.APJD01000024_gene386	0.0	1097.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2TRHJ@28211|Alphaproteobacteria,3JW9N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
SX3_k127_498038_1	1297865.APJD01000024_gene387	1.245e-260	802.0	COG1680@1|root,COG1680@2|Bacteria,1QD0J@1224|Proteobacteria,2U535@28211|Alphaproteobacteria,3K2NM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_498038_5	1297865.APJD01000024_gene388	3.092e-33	132.0	COG2271@1|root,COG2271@2|Bacteria,1MWYR@1224|Proteobacteria,2TSXW@28211|Alphaproteobacteria,3JTZP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Transmembrane secretion effector	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_4993946_1	1297865.APJD01000014_gene839	1.766e-180	567.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2TQT8@28211|Alphaproteobacteria,3JTRW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	pcpB	-	1.14.13.127,1.14.13.50	ko:K03391,ko:K05712	ko00360,ko00361,ko00364,ko01100,ko01120,ko01220,map00360,map00361,map00364,map01100,map01120,map01220	M00545	R03982,R06786,R06787,R07779	RC00236,RC01932	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_4993946_0	1297865.APJD01000014_gene838	1.018e-217	675.0	COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,2TT62@28211|Alphaproteobacteria,3JRW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Fatty acid desaturase	-	-	1.14.19.1	ko:K00507	ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212	-	R02222	RC00917	ko00000,ko00001,ko01000,ko01004	-	-	-	FA_desaturase
SX3_k127_4993946_2	1297865.APJD01000014_gene837	1.946e-143	458.0	COG2755@1|root,COG2755@2|Bacteria,1N85H@1224|Proteobacteria,2UGNB@28211|Alphaproteobacteria,3K398@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GDSL-like Lipase/Acylhydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
SX3_k127_4993946_3	1297865.APJD01000014_gene836	3.895e-37	141.0	29CTN@1|root,2ZZRT@2|Bacteria,1N1AV@1224|Proteobacteria,2UE3T@28211|Alphaproteobacteria,3K0RH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_4995684_0	1297865.APJD01000006_gene4762	0.0	1064.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TR1D@28211|Alphaproteobacteria,3JWCD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_4995684_6	1297865.APJD01000006_gene4761	1.521e-186	584.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TR68@28211|Alphaproteobacteria,3JW0P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_4995684_7	1297865.APJD01000006_gene4760	3.74e-175	551.0	COG1173@1|root,COG1173@2|Bacteria,1MXGS@1224|Proteobacteria,2TTQ7@28211|Alphaproteobacteria,3JVF4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_4995684_9	1336235.JAEG01000008_gene1352	1.745e-123	404.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,4B7FM@82115|Rhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_4995684_4	1297865.APJD01000006_gene4758	8.534e-217	678.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,3JR82@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Oligopeptide/dipeptide transporter, C-terminal region	-	-	-	ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_4995684_8	1297865.APJD01000006_gene4757	5.601e-129	415.0	COG1309@1|root,COG1309@2|Bacteria,1N2VD@1224|Proteobacteria,2U0HH@28211|Alphaproteobacteria,3JVMP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_4995684_3	1297865.APJD01000006_gene4756	2.533e-243	755.0	COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,2TS39@28211|Alphaproteobacteria,3JWZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Biotin-lipoyl like	-	-	-	ko:K03543	-	M00701	-	-	ko00000,ko00002,ko02000	8.A.1.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_4995684_1	1297865.APJD01000006_gene4755	1.117e-316	971.0	COG0477@1|root,COG2814@2|Bacteria,1R5T5@1224|Proteobacteria,2U2DF@28211|Alphaproteobacteria,3JV8D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
SX3_k127_4995684_5	1297865.APJD01000006_gene4754	3.004e-205	639.0	COG0656@1|root,COG0656@2|Bacteria,1MW36@1224|Proteobacteria,2TVCA@28211|Alphaproteobacteria,3JTT5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aldo/keto reductase family	-	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
SX3_k127_4995684_2	1297865.APJD01000006_gene4753	3.554e-268	825.0	COG0596@1|root,COG0596@2|Bacteria,1MWVN@1224|Proteobacteria,2TQVB@28211|Alphaproteobacteria,3JRID@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Epoxide hydrolase N terminus	MA20_04980	-	-	ko:K21159	ko01059,map01059	-	-	-	ko00000,ko00001	-	-	-	EHN
SX3_k127_4995684_10	172088.AUGA01000008_gene1103	1.146e-19	100.0	2AJE3@1|root,319ZW@2|Bacteria,1NV0T@1224|Proteobacteria,2URPU@28211|Alphaproteobacteria,3K3XM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5006863_11	1297865.APJD01000046_gene4301	1.532e-43	159.0	COG1028@1|root,COG1028@2|Bacteria,1NZHW@1224|Proteobacteria,2UTDT@28211|Alphaproteobacteria,3K4IW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_5006863_6	1304878.AUGD01000037_gene5399	1.006e-83	280.0	COG1846@1|root,COG1846@2|Bacteria	2|Bacteria	K	DNA-binding transcription factor activity	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_5006863_12	1297865.APJD01000033_gene6913	1.315e-41	153.0	COG3620@1|root,COG3620@2|Bacteria,1N0SA@1224|Proteobacteria,2UD0K@28211|Alphaproteobacteria,3K0RK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3
SX3_k127_5006863_8	1304878.AUGD01000039_gene5372	2.693e-54	191.0	2E4AR@1|root,32Z6E@2|Bacteria,1MZRK@1224|Proteobacteria,2UC4U@28211|Alphaproteobacteria,3K5U5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized conserved protein (DUF2285)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2285
SX3_k127_5006863_13	1297865.APJD01000059_gene3013	1.011e-12	74.0	2EHBX@1|root,33B3S@2|Bacteria,1NHEE@1224|Proteobacteria,2UKX6@28211|Alphaproteobacteria,3K29A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5006863_4	1304878.AUGD01000039_gene5373	1.046e-116	376.0	COG5419@1|root,COG5419@2|Bacteria,1RJ85@1224|Proteobacteria,2UANH@28211|Alphaproteobacteria,3K5V3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized conserved protein (DUF2285)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2285
SX3_k127_5006863_9	1304878.AUGD01000039_gene5374	5.36e-53	187.0	COG3311@1|root,COG3311@2|Bacteria,1RGX4@1224|Proteobacteria,2UBWS@28211|Alphaproteobacteria,3K460@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_17
SX3_k127_5006863_0	1304878.AUGD01000039_gene5375	2.852e-253	781.0	COG5534@1|root,COG5534@2|Bacteria,1MXQ0@1224|Proteobacteria,2TRBV@28211|Alphaproteobacteria,3JSIT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	PFAM Replication initiator protein A	-	-	-	-	-	-	-	-	-	-	-	-	RPA
SX3_k127_5006863_1	1304878.AUGD01000039_gene5376	5.097e-133	427.0	COG1192@1|root,COG1192@2|Bacteria,1MWRE@1224|Proteobacteria,2TSJZ@28211|Alphaproteobacteria,3K2HB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	VirC1 protein	-	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
SX3_k127_5006863_10	1304878.AUGD01000039_gene5377	2.271e-45	165.0	2E43J@1|root,32YZW@2|Bacteria,1N99M@1224|Proteobacteria,2UH92@28211|Alphaproteobacteria,3JZWY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5006863_5	1304878.AUGD01000039_gene5378	3.127e-110	366.0	2BYDP@1|root,2Z7UG@2|Bacteria,1P8PK@1224|Proteobacteria,2U09C@28211|Alphaproteobacteria,3JXXD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2840)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2840
SX3_k127_5006863_3	1304878.AUGD01000039_gene5379	5.11e-120	387.0	COG4959@1|root,COG4959@2|Bacteria,1MV1E@1224|Proteobacteria,2TV10@28211|Alphaproteobacteria,3JYE1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OU	Signal peptidase, peptidase S26	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S26
SX3_k127_5006863_7	1304878.AUGD01000039_gene5380	7.852e-83	276.0	COG5489@1|root,COG5489@2|Bacteria,1RJH0@1224|Proteobacteria,2UAK6@28211|Alphaproteobacteria,3K2IM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_5006863_2	1304878.AUGD01000039_gene5381	1.76e-126	407.0	COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,2U313@28211|Alphaproteobacteria,3K3DS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	-	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_5012153_3	172088.AUGA01000039_gene4510	9.205e-28	117.0	COG2267@1|root,COG2267@2|Bacteria,1N03H@1224|Proteobacteria,2U2EH@28211|Alphaproteobacteria,3JV1A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	3.1.1.76	ko:K22250	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
SX3_k127_5012153_0	1297865.APJD01000003_gene6245	0.0	1170.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2TVC3@28211|Alphaproteobacteria,3JXW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	COG3243 Poly(3-hydroxyalkanoate) synthetase	-	-	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1,PhaC_N
SX3_k127_5012153_2	1297865.APJD01000003_gene6244	6.919e-96	315.0	COG2030@1|root,COG2030@2|Bacteria,1RHPH@1224|Proteobacteria,2U9GG@28211|Alphaproteobacteria,3JY0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	MaoC like domain	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
SX3_k127_5012153_1	1297865.APJD01000003_gene6243	0.0	1065.0	COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2TR96@28211|Alphaproteobacteria,3JWZ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.48	ko:K00666,ko:K02182	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_5013665_2	398525.KB900701_gene6805	7.617e-133	424.0	COG4948@1|root,COG4948@2|Bacteria,1MVFW@1224|Proteobacteria,2TU7R@28211|Alphaproteobacteria,3JSJX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	MA20_01110	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0009987,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0022607,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0046872,GO:0047808,GO:0051259,GO:0051260,GO:0065003,GO:0071840	4.2.1.81	ko:K22209	-	-	-	-	ko00000,ko01000	-	-	-	MR_MLE_C,MR_MLE_N
SX3_k127_5013665_7	114615.BRADO3920	1.915e-09	61.0	COG4953@1|root,COG4953@2|Bacteria,1MUA9@1224|Proteobacteria,2TR2R@28211|Alphaproteobacteria,3JS2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-Binding Protein C-terminus Family	pbpC	-	2.4.1.129	ko:K05367	ko00550,map00550	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	BiPBP_C,Transgly,Transpeptidase
SX3_k127_5013665_5	1297865.APJD01000006_gene4438	5.979e-54	192.0	2CC0C@1|root,32RUG@2|Bacteria,1MZVQ@1224|Proteobacteria,2UBWU@28211|Alphaproteobacteria,3JZF1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3297)	MA20_01105	-	-	-	-	-	-	-	-	-	-	-	DUF3297
SX3_k127_5013665_4	1297865.APJD01000006_gene4437	8.958e-102	331.0	COG0386@1|root,COG0386@2|Bacteria,1RD1R@1224|Proteobacteria,2U7R3@28211|Alphaproteobacteria,3JY9C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the glutathione peroxidase family	MA20_01100	-	1.11.1.9	ko:K00432	ko00480,ko00590,ko04918,map00480,map00590,map04918	-	R00274,R07034,R07035	RC00011,RC00982	ko00000,ko00001,ko01000	-	-	-	GSHPx
SX3_k127_5013665_0	1297865.APJD01000006_gene4436	7.567e-303	929.0	COG0154@1|root,COG0154@2|Bacteria,1MUKC@1224|Proteobacteria,2TTUD@28211|Alphaproteobacteria,3JQMY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the amidase family	MA20_01095	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_5013665_3	1297865.APJD01000006_gene4435	2.59e-119	385.0	COG2863@1|root,COG2863@2|Bacteria,1N7W9@1224|Proteobacteria,2TSFV@28211|Alphaproteobacteria,3JRG8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	ko:K17230	ko00920,ko01120,map00920,map01120	-	R09499	-	ko00000,ko00001	-	-	-	Cytochrom_C,Cytochrome_CBB3
SX3_k127_5013665_1	1297865.APJD01000006_gene4434	2.193e-282	868.0	COG2133@1|root,COG2133@2|Bacteria,1MVK5@1224|Proteobacteria,2TRN9@28211|Alphaproteobacteria,3JTUJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glucose / Sorbosone dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	GSDH,PBP
SX3_k127_5013665_6	1297865.APJD01000006_gene4433	6.989e-50	177.0	2CCN4@1|root,349FJ@2|Bacteria,1N40A@1224|Proteobacteria,2UDHX@28211|Alphaproteobacteria,3K0HB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_01090	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5013665_8	1298867.AUES01000024_gene2904	3.717e-09	58.0	2AHDM@1|root,317QN@2|Bacteria,1NKES@1224|Proteobacteria,2UKG1@28211|Alphaproteobacteria,3K25Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PqqA family	-	-	-	-	-	-	-	-	-	-	-	-	PqqA
SX3_k127_5016922_1	1297865.APJD01000009_gene2789	6.971e-107	347.0	COG0458@1|root,COG0458@2|Bacteria,1MUDZ@1224|Proteobacteria,2TQZU@28211|Alphaproteobacteria,3JTPJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Belongs to the CarB family	carB	-	6.3.5.5	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	M00051	R00256,R00575,R01395,R10948,R10949	RC00002,RC00010,RC00043,RC02750,RC02798,RC03314	ko00000,ko00001,ko00002,ko01000	-	-	-	CPSase_L_D2,CPSase_L_D3,MGS
SX3_k127_5016922_3	1297865.APJD01000009_gene2790	3.524e-92	303.0	COG0782@1|root,COG0782@2|Bacteria,1RCXW@1224|Proteobacteria,2U5JU@28211|Alphaproteobacteria,3JUGY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides	greA	-	-	ko:K03624	-	-	-	-	ko00000,ko03021	-	-	-	GreA_GreB,GreA_GreB_N
SX3_k127_5016922_4	1297865.APJD01000009_gene2791	2.328e-80	268.0	COG2259@1|root,COG2259@2|Bacteria,1N072@1224|Proteobacteria,2UCXT@28211|Alphaproteobacteria,3JZVV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DoxX	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
SX3_k127_5016922_2	1297865.APJD01000009_gene2792	4.1e-99	324.0	COG1522@1|root,COG1522@2|Bacteria,1MXVU@1224|Proteobacteria,2TTCK@28211|Alphaproteobacteria,3JT4C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	lrp	GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006355,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009889,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0016054,GO:0019219,GO:0019222,GO:0019752,GO:0031323,GO:0031326,GO:0042221,GO:0043200,GO:0043201,GO:0043436,GO:0043565,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901698,GO:1901700,GO:1903506,GO:2000112,GO:2001141	-	-	-	-	-	-	-	-	-	-	AsnC_trans_reg,HTH_24
SX3_k127_5016922_0	1297865.APJD01000009_gene2793	1.552e-161	509.0	COG0492@1|root,COG0492@2|Bacteria,1MV15@1224|Proteobacteria,2TRBW@28211|Alphaproteobacteria,3JRYT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family	trxB	-	1.8.1.9	ko:K00384	ko00450,map00450	-	R02016,R03596,R09372	RC00013,RC02518,RC02873	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
SX3_k127_5018650_10	1230476.C207_02501	2.376e-154	489.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JQWG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	MA20_17095	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_5018650_5	1297865.APJD01000007_gene2340	1.629e-204	638.0	COG3485@1|root,COG3485@2|Bacteria,1MX7W@1224|Proteobacteria,2TT8T@28211|Alphaproteobacteria,3JRKQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_17090	-	1.13.11.37	ko:K04098	ko00361,ko00362,ko01100,ko01120,map00361,map00362,map01100,map01120	-	R03891,R04061	RC00388,RC01016	ko00000,ko00001,ko01000	-	-	-	Dioxygenase_C,Dioxygenase_N
SX3_k127_5018650_1	1297865.APJD01000007_gene2341	1.135e-294	906.0	COG0715@1|root,COG0715@2|Bacteria,1MWDN@1224|Proteobacteria,2TS0X@28211|Alphaproteobacteria,3JSSI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	nrtA	-	-	ko:K15576	ko00910,ko02010,map00910,map02010	M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16.1,3.A.1.16.2	-	-	NMT1_2
SX3_k127_5018650_7	1297865.APJD01000007_gene2342	2.765e-187	587.0	COG0600@1|root,COG0600@2|Bacteria,1MU6Q@1224|Proteobacteria,2TQT6@28211|Alphaproteobacteria,3JUAR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	nrtB	-	-	ko:K02050,ko:K15577	ko00910,ko02010,map00910,map02010	M00188,M00438	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16,3.A.1.16.1,3.A.1.16.2,3.A.1.17	-	-	BPD_transp_1
SX3_k127_5018650_9	1297865.APJD01000007_gene2343	8.99e-162	527.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2TUIC@28211|Alphaproteobacteria,3JTSM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	nrtC	-	-	ko:K02049,ko:K15578	ko00910,ko02010,map00910,map02010	M00188,M00438	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.16,3.A.1.16.1,3.A.1.17	-	-	ABC_tran
SX3_k127_5018650_12	1297865.APJD01000007_gene2344	3.037e-84	281.0	COG1017@1|root,COG1017@2|Bacteria,1QVJP@1224|Proteobacteria,2U5M6@28211|Alphaproteobacteria,3JY65@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the globin family	MA20_17055	-	1.14.12.17	ko:K05916	ko05132,map05132	-	-	-	ko00000,ko00001,ko01000	-	-	-	Globin
SX3_k127_5018650_6	1297865.APJD01000007_gene2345	1.025e-201	628.0	COG3386@1|root,COG3386@2|Bacteria,1MXVD@1224|Proteobacteria,2TVCW@28211|Alphaproteobacteria,3JTRB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	SMP-30/Gluconolaconase/LRE-like region	MA20_17040	-	3.1.1.17	ko:K01053,ko:K02352	ko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220	M00129	R01519,R02933,R03751	RC00537,RC00983	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	SGL
SX3_k127_5018650_3	1297865.APJD01000007_gene2346	5.425e-270	832.0	COG0654@1|root,COG0654@2|Bacteria,1MWWT@1224|Proteobacteria,2TRZP@28211|Alphaproteobacteria,3JVCQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	1.14.13.24	ko:K22270	ko00362,ko01120,map00362,map01120	-	R02589	RC00046	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3
SX3_k127_5018650_11	1297865.APJD01000007_gene2347	5.977e-106	349.0	COG1846@1|root,COG1846@2|Bacteria,1RI2K@1224|Proteobacteria,2U47M@28211|Alphaproteobacteria,3JW11@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_5018650_4	1297865.APJD01000007_gene2348	5.303e-219	681.0	COG2159@1|root,COG2159@2|Bacteria,1MXI7@1224|Proteobacteria,2U15G@28211|Alphaproteobacteria,3JVRP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	4.1.1.103,4.1.1.46	ko:K07045,ko:K14333,ko:K15063,ko:K20941	ko00362,ko00627,ko01120,map00362,map00627,map01120	-	R00821,R09278,R11353	RC00390,RC00569	ko00000,ko00001,ko01000	-	-	-	Amidohydro_2
SX3_k127_5018650_2	1297865.APJD01000007_gene2349	1.377e-285	879.0	COG0477@1|root,COG2814@2|Bacteria,1MVQQ@1224|Proteobacteria,2TRBF@28211|Alphaproteobacteria,3JXPV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	benK	-	-	ko:K05548,ko:K08178,ko:K08195	-	-	-	-	ko00000,ko02000	2.A.1.12,2.A.1.15	-	-	MFS_1,MFS_4,Sugar_tr
SX3_k127_5018650_13	1297865.APJD01000007_gene2350	3.465e-62	228.0	COG2259@1|root,COG2259@2|Bacteria,1PNBS@1224|Proteobacteria,2VCZ0@28211|Alphaproteobacteria,3JY05@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SURF4 family	-	-	-	ko:K15977	-	-	-	-	ko00000	-	-	-	DoxX
SX3_k127_5018650_8	1297865.APJD01000007_gene2351	1.357e-168	536.0	COG0500@1|root,COG2226@2|Bacteria,1R439@1224|Proteobacteria,2U0N2@28211|Alphaproteobacteria,3JWUT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_5018650_0	1297865.APJD01000007_gene2352	5.224e-308	945.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JSVT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase	-	-	1.2.1.16,1.2.1.20,1.2.1.79	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	M00027	R00713,R00714,R02401	RC00080	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_5018650_14	1297865.APJD01000007_gene2353	3.503e-12	66.0	COG0518@1|root,COG0518@2|Bacteria,1MUDH@1224|Proteobacteria,2TU60@28211|Alphaproteobacteria,3JX3D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Glutamine amidotransferase class-I	-	-	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase
SX3_k127_5070974_11	266265.Bxe_B1720	1.045e-29	123.0	COG0438@1|root,COG0438@2|Bacteria,1N0Z5@1224|Proteobacteria,2VRC8@28216|Betaproteobacteria,1K4W7@119060|Burkholderiaceae	28216|Betaproteobacteria	M	PFAM glycosyl transferase group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_5070974_0	1297865.APJD01000014_gene701	3.508e-309	947.0	COG3664@1|root,COG3664@2|Bacteria,1N1K6@1224|Proteobacteria,2VFH5@28211|Alphaproteobacteria,3K6H2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the glycosyl hydrolase 5 (cellulase A) family	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5070974_7	1297865.APJD01000014_gene700	1.251e-175	552.0	COG1216@1|root,COG1216@2|Bacteria,1N0YC@1224|Proteobacteria,2V84B@28211|Alphaproteobacteria,3K0V5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
SX3_k127_5070974_1	1297865.APJD01000014_gene699	2.68e-294	908.0	COG3307@1|root,COG3307@2|Bacteria,1Q7WY@1224|Proteobacteria,2UUQQ@28211|Alphaproteobacteria	28211|Alphaproteobacteria	M	O-Antigen ligase	-	-	-	-	-	-	-	-	-	-	-	-	Wzy_C
SX3_k127_5070974_4	1297865.APJD01000014_gene698	5.549e-232	727.0	COG3206@1|root,COG3206@2|Bacteria,1R5R1@1224|Proteobacteria,2U0R4@28211|Alphaproteobacteria,3K2QY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	protein involved in exopolysaccharide biosynthesis	-	-	-	ko:K16554	ko05111,map05111	-	-	-	ko00000,ko00001,ko02000	8.A.3.1	-	-	AAA_31,GNVR,Wzz
SX3_k127_5070974_2	1297865.APJD01000014_gene697	1.273e-234	736.0	COG0223@1|root,COG0223@2|Bacteria,1NN5V@1224|Proteobacteria,2TTHZ@28211|Alphaproteobacteria,3JRTG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5070974_6	1297865.APJD01000014_gene696	2.199e-184	579.0	COG0583@1|root,COG0583@2|Bacteria,1MU7H@1224|Proteobacteria,2TS72@28211|Alphaproteobacteria,3JTCN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5070974_5	1297865.APJD01000014_gene695	1.338e-218	679.0	COG2141@1|root,COG2141@2|Bacteria,1MWDV@1224|Proteobacteria,2TV51@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_5070974_8	1297865.APJD01000014_gene694	6.858e-170	534.0	COG0656@1|root,COG0656@2|Bacteria,1MWFS@1224|Proteobacteria,2TT2Q@28211|Alphaproteobacteria,3JRGG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aldo/keto reductase family	yafB	-	-	-	-	-	-	-	-	-	-	-	Aldo_ket_red
SX3_k127_5070974_3	1297865.APJD01000014_gene693	3.926e-232	722.0	COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,2TSPI@28211|Alphaproteobacteria,3JUSF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	ko:K19577	-	-	-	-	ko00000,ko02000	2.A.1.2.65	-	-	MFS_1,Sugar_tr
SX3_k127_5070974_9	1297865.APJD01000014_gene692	6.17e-157	496.0	COG1028@1|root,COG1028@2|Bacteria,1MUWC@1224|Proteobacteria,2TV32@28211|Alphaproteobacteria,3JRJH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
SX3_k127_5070974_10	1297865.APJD01000014_gene691	1.018e-72	245.0	COG1661@1|root,COG1661@2|Bacteria,1RJC1@1224|Proteobacteria	1224|Proteobacteria	S	DNA-binding protein with PD1-like DNA-binding motif	-	-	-	ko:K06934	-	-	-	-	ko00000	-	-	-	DUF296
SX3_k127_5076436_0	1297865.APJD01000028_gene5194	0.0	1084.0	COG0072@1|root,COG0073@1|root,COG0072@2|Bacteria,COG0073@2|Bacteria,1MWKS@1224|Proteobacteria,2TQV8@28211|Alphaproteobacteria,3JUGP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	pheT	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.20	ko:K01890	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	B3_4,B5,FDX-ACB,tRNA_bind
SX3_k127_5076436_5	1297865.APJD01000028_gene5195	1.085e-88	293.0	COG4405@1|root,COG4405@2|Bacteria,1N2T4@1224|Proteobacteria,2U5Q9@28211|Alphaproteobacteria,3JZ6C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ASCH	-	-	-	-	-	-	-	-	-	-	-	-	ASCH
SX3_k127_5076436_1	1297865.APJD01000028_gene5196	4.767e-239	742.0	COG0016@1|root,COG0016@2|Bacteria,1MVD7@1224|Proteobacteria,2TS2T@28211|Alphaproteobacteria,3JTB6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily	pheS	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.20	ko:K01889	ko00970,map00970	M00359,M00360	R03660	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	Phe_tRNA-synt_N,tRNA-synt_2d
SX3_k127_5076436_6	1297865.APJD01000028_gene5197	5.051e-83	276.0	2F97B@1|root,341IQ@2|Bacteria,1RF7E@1224|Proteobacteria,2U8YM@28211|Alphaproteobacteria,3JYWE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5076436_7	1230476.C207_02232	6.139e-66	226.0	COG0292@1|root,COG0292@2|Bacteria,1RGU2@1224|Proteobacteria,2U756@28211|Alphaproteobacteria,3JYPT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit	rplT	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0065003,GO:0070925,GO:0071826,GO:0071840	-	ko:K02887	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L20
SX3_k127_5076436_8	189753.AXAS01000026_gene8280	1.773e-34	132.0	COG0291@1|root,COG0291@2|Bacteria,1N6V4@1224|Proteobacteria,2UF6K@28211|Alphaproteobacteria,3K09F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL35 family	rpmI	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02916	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L35p
SX3_k127_5076436_3	196490.AUEZ01000033_gene6604	8.104e-109	354.0	COG0290@1|root,COG0290@2|Bacteria,1RDD2@1224|Proteobacteria,2U58Z@28211|Alphaproteobacteria,3JTD0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins	infC	GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008	-	ko:K02520	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	IF3_C,IF3_N
SX3_k127_5076436_2	1297865.APJD01000028_gene5201	6.409e-176	551.0	COG1073@1|root,COG1073@2|Bacteria,1MX88@1224|Proteobacteria,2TSRE@28211|Alphaproteobacteria,3JSR8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	MA20_24420	-	-	ko:K06889	-	-	-	-	ko00000	-	-	-	Abhydrolase_6,Hydrolase_4
SX3_k127_5076436_4	1297865.APJD01000028_gene5202	1.2e-95	314.0	COG3631@1|root,COG3631@2|Bacteria,1P5A2@1224|Proteobacteria,2TV5B@28211|Alphaproteobacteria,3JR2U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	MA20_24415	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
SX3_k127_5092431_7	1297865.APJD01000047_gene4779	4.638e-176	553.0	COG1463@1|root,COG1463@2|Bacteria,1MU4B@1224|Proteobacteria,2U1JN@28211|Alphaproteobacteria,3JU5J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	MlaD protein	MA20_08125	-	-	ko:K02067	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaD
SX3_k127_5092431_9	1297865.APJD01000047_gene4780	1.637e-158	504.0	COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2TR2I@28211|Alphaproteobacteria,3JRZD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	ABC transporter	yrbF	-	-	ko:K02065	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_tran
SX3_k127_5092431_3	1230476.C207_00830	2.388e-221	691.0	COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2TSGS@28211|Alphaproteobacteria,3JTST@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Permease MlaE	MA20_08115	-	-	ko:K02066	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaE,STAS,STAS_2
SX3_k127_5092431_11	634500.EbC_22930	2.309e-81	282.0	COG4948@1|root,COG4948@2|Bacteria,1MW76@1224|Proteobacteria,1RMKS@1236|Gammaproteobacteria,3X5NI@551|Erwinia	1236|Gammaproteobacteria	M	Belongs to the mandelate racemase muconate lactonizing enzyme family	ycjG	GO:0003674,GO:0003824,GO:0016853,GO:0016854,GO:0016855	5.1.1.20,5.5.1.1	ko:K01856,ko:K19802	ko00361,ko00362,ko00364,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00364,map00623,map01100,map01120,map01220	M00568	R05300,R05390,R06989,R08116,R09229,R10938	RC00903,RC01038,RC01108,RC01321,RC01356,RC03309	ko00000,ko00001,ko00002,ko01000	-	-	iEC042_1314.EC042_1441,iECUMN_1333.ECUMN_1620	MR_MLE_C,MR_MLE_N
SX3_k127_5092431_2	1297865.APJD01000047_gene4783	6.845e-222	717.0	COG0477@1|root,COG2814@2|Bacteria,1MVZI@1224|Proteobacteria,2U5H1@28211|Alphaproteobacteria,3JSND@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Nucleoside H+ symporter	-	-	-	ko:K05820	-	-	-	-	ko00000,ko02000	2.A.1.27	-	-	MFS_1_like
SX3_k127_5092431_0	1297865.APJD01000047_gene4784	2.444e-242	754.0	2EC3N@1|root,3362H@2|Bacteria,1QW5D@1224|Proteobacteria,2TWN8@28211|Alphaproteobacteria,3JV8I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5092431_5	1297865.APJD01000047_gene4785	4.935e-201	628.0	COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2TQN9@28211|Alphaproteobacteria,3JQZ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	tdcB	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006520,GO:0006563,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016841,GO:0016853,GO:0016854,GO:0016855,GO:0017144,GO:0018249,GO:0019538,GO:0019752,GO:0019842,GO:0030170,GO:0030378,GO:0030848,GO:0036094,GO:0036211,GO:0036361,GO:0042219,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046416,GO:0046437,GO:0046872,GO:0047661,GO:0048037,GO:0050662,GO:0070178,GO:0070179,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607	4.3.1.19	ko:K01754	ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230	M00570	R00220,R00996	RC00418,RC02600	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_5092431_1	1297865.APJD01000047_gene4786	4.774e-242	749.0	COG0438@1|root,COG0438@2|Bacteria,1MUB7@1224|Proteobacteria,2TQQ0@28211|Alphaproteobacteria,3JTNY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	glycosyl transferase group 1	MA20_08070	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_5092431_6	1230476.C207_00837	6.778e-186	581.0	COG2908@1|root,COG2908@2|Bacteria,1MVKD@1224|Proteobacteria,2TSEB@28211|Alphaproteobacteria,3JSA7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase superfamily domain	MA20_08065	-	-	-	-	-	-	-	-	-	-	-	Metallophos,Metallophos_2
SX3_k127_5092431_8	1297865.APJD01000047_gene4788	5.463e-159	504.0	COG0351@1|root,COG0351@2|Bacteria,1MU9J@1224|Proteobacteria,2TUKR@28211|Alphaproteobacteria,3JRSS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Phosphomethylpyrimidine kinase	thiD	-	2.7.1.49,2.7.4.7	ko:K00941	ko00730,ko01100,map00730,map01100	M00127	R03471,R04509	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	Phos_pyr_kin
SX3_k127_5092431_12	1297865.APJD01000047_gene4789	9.609e-47	168.0	COG1522@1|root,COG1522@2|Bacteria,1MZDV@1224|Proteobacteria,2UBTU@28211|Alphaproteobacteria,3K0HQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Lrp/AsnC ligand binding domain	QU41_18010	-	-	-	-	-	-	-	-	-	-	-	AsnC_trans_reg
SX3_k127_5092431_4	1297865.APJD01000047_gene4790	1.28e-210	653.0	COG2010@1|root,COG2010@2|Bacteria,1MV6D@1224|Proteobacteria,2TT9U@28211|Alphaproteobacteria,3JSQ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c, mono- and diheme variants	cycG	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C
SX3_k127_5092431_10	1297865.APJD01000047_gene4791	6.311e-82	273.0	COG2335@1|root,COG2335@2|Bacteria,1MZ8G@1224|Proteobacteria,2U5ZN@28211|Alphaproteobacteria,3JY4R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	A domain in the BMP inhibitor chordin and in microbial proteins.	-	-	-	-	-	-	-	-	-	-	-	-	CHRD
SX3_k127_5092640_7	1038859.AXAU01000024_gene3974	1.235e-150	484.0	COG4107@1|root,COG4107@2|Bacteria,1MVRN@1224|Proteobacteria,2TQXF@28211|Alphaproteobacteria,3JU21@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	phnK	GO:0005575,GO:0006793,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0019634,GO:0019637,GO:0019700,GO:0032991,GO:0044237,GO:0046434,GO:0071704,GO:1901575,GO:1902494,GO:1904176	-	ko:K05781	-	-	-	-	ko00000	-	-	-	ABC_tran
SX3_k127_5092640_3	1297865.APJD01000007_gene2101	2.133e-195	612.0	COG3627@1|root,COG3627@2|Bacteria,1MV7T@1224|Proteobacteria,2TRKP@28211|Alphaproteobacteria,3JUSW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose	phnJ	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006793,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016829,GO:0018835,GO:0019634,GO:0019637,GO:0019700,GO:0032991,GO:0044237,GO:0046434,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0098848,GO:1901575,GO:1902494,GO:1904176	4.7.1.1	ko:K06163	ko00440,map00440	-	R10204	RC03078,RC03079	ko00000,ko00001,ko01000	-	-	-	PhnJ
SX3_k127_5092640_0	1297865.APJD01000007_gene2100	1.184e-236	732.0	COG3626@1|root,COG3626@2|Bacteria,1MUBA@1224|Proteobacteria,2TR4C@28211|Alphaproteobacteria,3JRU6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial phosphonate metabolism protein (PhnI)	phnI	GO:0003674,GO:0003824,GO:0005575,GO:0006793,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0019634,GO:0019637,GO:0019700,GO:0032991,GO:0044237,GO:0046434,GO:0061693,GO:0061694,GO:0061695,GO:0071704,GO:1901575,GO:1902494,GO:1904176,GO:1990234	2.7.8.37	ko:K06164	ko00440,map00440	-	R10185	RC00005,RC00063	ko00000,ko00001,ko01000	-	-	-	PhnI
SX3_k127_5092640_10	1297865.APJD01000007_gene2099	2.607e-118	383.0	COG3625@1|root,COG3625@2|Bacteria,1RHXN@1224|Proteobacteria,2U9PC@28211|Alphaproteobacteria,3JVKA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial phosphonate metabolism protein (PhnH)	phnH	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0006793,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0019634,GO:0019637,GO:0019700,GO:0032991,GO:0042802,GO:0044237,GO:0046434,GO:0061694,GO:0061695,GO:0071704,GO:1901575,GO:1902494,GO:1904176,GO:1990234	2.7.8.37	ko:K06165	ko00440,map00440	-	R10185	RC00005,RC00063	ko00000,ko00001,ko01000	-	-	-	PhnH
SX3_k127_5092640_11	398525.KB900701_gene3273	4.016e-80	270.0	COG3624@1|root,COG3624@2|Bacteria,1MZTZ@1224|Proteobacteria,2UD64@28211|Alphaproteobacteria,3JY3S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphonate metabolism protein PhnG	phnG	GO:0005575,GO:0006793,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0019634,GO:0019637,GO:0019700,GO:0032991,GO:0044237,GO:0046434,GO:0061694,GO:0061695,GO:0071704,GO:1901575,GO:1902494,GO:1904176,GO:1990234	2.7.8.37	ko:K06166	ko00440,map00440	-	R10185	RC00005,RC00063	ko00000,ko00001,ko01000	-	-	-	PhnG
SX3_k127_5092640_8	1297865.APJD01000007_gene2097	1.799e-150	477.0	COG2188@1|root,COG2188@2|Bacteria,1Q856@1224|Proteobacteria,2TSMX@28211|Alphaproteobacteria,3JS51@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	UTRA	phnF	-	-	ko:K02043	-	-	-	-	ko00000,ko03000	-	-	-	GntR,UTRA
SX3_k127_5092640_6	1297865.APJD01000007_gene2096	1.141e-167	537.0	COG3639@1|root,COG3639@2|Bacteria,1MW4F@1224|Proteobacteria,2TTXJ@28211|Alphaproteobacteria,3JSAC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	phosphonate ABC transporter	MA20_21480	-	-	ko:K02042	ko02010,map02010	M00223	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.9	-	-	BPD_transp_1
SX3_k127_5092640_4	1297865.APJD01000007_gene2095	1.781e-184	578.0	COG3639@1|root,COG3639@2|Bacteria,1MW4F@1224|Proteobacteria,2TUNJ@28211|Alphaproteobacteria,3JQNT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_21485	-	-	ko:K02042	ko02010,map02010	M00223	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.9	-	-	BPD_transp_1
SX3_k127_5092640_2	1297865.APJD01000007_gene2094	4.548e-199	623.0	COG3221@1|root,COG3221@2|Bacteria,1MXD8@1224|Proteobacteria,2TQMQ@28211|Alphaproteobacteria,3JQVM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphonate ABC transporter	MA20_21490	-	-	ko:K02044	ko02010,map02010	M00223	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.9	-	-	Phosphonate-bd
SX3_k127_5092640_5	1297865.APJD01000007_gene2093	1.081e-169	534.0	COG3638@1|root,COG3638@2|Bacteria,1MVE9@1224|Proteobacteria,2TRR3@28211|Alphaproteobacteria,3JQYU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system	phnC	-	3.6.3.28	ko:K02041	ko02010,map02010	M00223	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.9	-	-	ABC_tran
SX3_k127_5092640_9	1230476.C207_03004	1.961e-137	438.0	COG0110@1|root,COG0110@2|Bacteria,1MUCJ@1224|Proteobacteria,2TSYD@28211|Alphaproteobacteria,3JSPV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial transferase hexapeptide (six repeats)	-	-	2.3.1.28	ko:K00638	-	-	-	-	br01600,ko00000,ko01000,ko01504	-	-	-	Hexapep
SX3_k127_5092640_1	1297865.APJD01000007_gene2091	1.752e-221	693.0	COG3454@1|root,COG3454@2|Bacteria,1MXDS@1224|Proteobacteria,2TQU0@28211|Alphaproteobacteria,3JS90@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphonate metabolism	MA20_21505	-	3.6.1.63	ko:K06162	ko00440,map00440	-	R10186	RC00002	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
SX3_k127_5094717_2	1297865.APJD01000007_gene2353	8.395e-136	434.0	COG0518@1|root,COG0518@2|Bacteria,1MUDH@1224|Proteobacteria,2TU60@28211|Alphaproteobacteria,3JX3D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Glutamine amidotransferase class-I	-	-	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase
SX3_k127_5094717_1	1297865.APJD01000007_gene2354	1.07e-234	726.0	COG1910@1|root,COG2005@1|root,COG1910@2|Bacteria,COG2005@2|Bacteria,1MVS4@1224|Proteobacteria,2TVB8@28211|Alphaproteobacteria,3JUDZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	PBP superfamily domain	-	-	-	ko:K07219	-	-	-	-	ko00000	-	-	-	HTH_1,HTH_17,PBP_like
SX3_k127_5094717_0	1297865.APJD01000007_gene2355	2.859e-268	827.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JS1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	-	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_5094743_1	1297865.APJD01000035_gene5463	1.135e-215	669.0	COG0366@1|root,COG0366@2|Bacteria,1MVKX@1224|Proteobacteria,2TRS3@28211|Alphaproteobacteria,3JS80@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Alpha-amylase domain	MA20_23410	-	3.2.1.20	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	-	R00028,R00801,R00802,R06087,R06088	RC00028,RC00049,RC00077	ko00000,ko00001,ko01000	-	GH31	-	Alpha-amylase,DUF3459
SX3_k127_5094743_3	1297865.APJD01000035_gene5462	9.068e-164	519.0	COG1723@1|root,COG1723@2|Bacteria,1MWYM@1224|Proteobacteria,2TU31@28211|Alphaproteobacteria,3JSDE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised ACR, YagE family COG1723	-	-	-	-	-	-	-	-	-	-	-	-	DUF155
SX3_k127_5094743_4	1297865.APJD01000035_gene5461	6.485e-153	482.0	COG0491@1|root,COG0491@2|Bacteria,1MUDN@1224|Proteobacteria,2TQJ9@28211|Alphaproteobacteria,3JT7M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	ycbL	GO:0003674,GO:0003824,GO:0004416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0019243,GO:0019752,GO:0032787,GO:0042180,GO:0042182,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_5094743_0	1297865.APJD01000035_gene5460	6.003e-267	826.0	COG3509@1|root,COG3509@2|Bacteria,1MXUI@1224|Proteobacteria,2TUS5@28211|Alphaproteobacteria,3JSEQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Esterase PHB depolymerase	-	-	-	-	-	-	-	-	-	-	-	-	Esterase_phd
SX3_k127_5094743_2	1297865.APJD01000035_gene5459	1.317e-204	638.0	COG0477@1|root,COG0477@2|Bacteria,1MWB4@1224|Proteobacteria,2TWQF@28211|Alphaproteobacteria,3JRCQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_5098354_7	1297865.APJD01000007_gene1755	9.634e-157	497.0	COG1028@1|root,COG1028@2|Bacteria,1QMHJ@1224|Proteobacteria,2VF2M@28211|Alphaproteobacteria,3JQPN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_5098354_4	1297865.APJD01000007_gene1756	8.131e-199	620.0	COG0583@1|root,COG0583@2|Bacteria,1MV06@1224|Proteobacteria,2TT94@28211|Alphaproteobacteria,3JUDB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5098354_13	1297865.APJD01000007_gene1758	7.928e-103	335.0	COG2867@1|root,COG2867@2|Bacteria,1RFKW@1224|Proteobacteria,2U7PF@28211|Alphaproteobacteria,3JZ48@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	negative regulation of translational initiation	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5098354_15	1297865.APJD01000007_gene1759	1.364e-62	216.0	2ES0B@1|root,33JJD@2|Bacteria,1MZAA@1224|Proteobacteria,2U9IP@28211|Alphaproteobacteria,3K014@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5098354_5	1297865.APJD01000007_gene1760	1.872e-196	613.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2TUD8@28211|Alphaproteobacteria,3JX0H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5098354_9	1297865.APJD01000007_gene1761	8.009e-131	418.0	COG1309@1|root,COG1309@2|Bacteria,1N6WG@1224|Proteobacteria,2UG93@28211|Alphaproteobacteria,3K5ZN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	ko:K16137	-	-	-	-	ko00000,ko03000	-	-	-	TetR_C_13,TetR_N
SX3_k127_5098354_6	1297865.APJD01000007_gene1762	3.484e-174	547.0	COG0697@1|root,COG0697@2|Bacteria,1MVKG@1224|Proteobacteria,2U30N@28211|Alphaproteobacteria,3JW6W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	ko:K15268	-	-	-	-	ko00000,ko02000	2.A.7.3.2	-	-	EamA
SX3_k127_5098354_1	1297865.APJD01000007_gene1763	0.0	1494.0	COG1629@1|root,COG4771@2|Bacteria,1MWB3@1224|Proteobacteria,2U1DE@28211|Alphaproteobacteria,3JWSE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	-	-	-	-	-	-	-	-	-	Plug,TonB_dep_Rec
SX3_k127_5098354_14	1297865.APJD01000007_gene1764	2.346e-78	262.0	2BTHG@1|root,30ZCG@2|Bacteria,1RKHQ@1224|Proteobacteria,2UA72@28211|Alphaproteobacteria,3JZCN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5098354_11	1297865.APJD01000007_gene1765	5.269e-124	399.0	COG1873@1|root,COG1873@2|Bacteria,1NADN@1224|Proteobacteria,2UHJI@28211|Alphaproteobacteria,3K1CJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
SX3_k127_5098354_3	1297865.APJD01000007_gene1766	6.723e-263	812.0	COG0050@1|root,COG0050@2|Bacteria,1R949@1224|Proteobacteria,2U2JK@28211|Alphaproteobacteria,3JTX2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Elongation factor Tu C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
SX3_k127_5098354_10	1297865.APJD01000007_gene1767	1.477e-129	418.0	2BS9T@1|root,32MBF@2|Bacteria,1R7SY@1224|Proteobacteria,2U1SA@28211|Alphaproteobacteria,3JTIX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5098354_8	1297865.APJD01000007_gene1768	6.517e-156	494.0	COG1028@1|root,COG1028@2|Bacteria,1MU3W@1224|Proteobacteria,2TT5X@28211|Alphaproteobacteria,3JVEQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.53	ko:K00038	ko00140,ko01100,map00140,map01100	-	R04831,R04834,R04844,R04847	RC00139,RC01219,RC01220	ko00000,ko00001,ko01000	-	-	-	adh_short_C2
SX3_k127_5098354_0	1297865.APJD01000007_gene1769	0.0	1703.0	COG1629@1|root,COG4771@2|Bacteria,1QU13@1224|Proteobacteria,2TWRB@28211|Alphaproteobacteria,3K6MT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_5098354_12	1297865.APJD01000007_gene1770	4.086e-123	397.0	COG2197@1|root,COG2197@2|Bacteria,1NU8C@1224|Proteobacteria,2UPV6@28211|Alphaproteobacteria,3K2WA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_5098354_2	1297865.APJD01000007_gene1771	2.168e-282	867.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3JRZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrom_C,Cytochrome_CBB3,PQQ,PQQ_2
SX3_k127_5100252_11	1297865.APJD01000009_gene2987	0.0003327	52.0	COG0778@1|root,COG0778@2|Bacteria,1NTK9@1224|Proteobacteria,2TR3E@28211|Alphaproteobacteria,3JV2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5100252_1	1297865.APJD01000009_gene2988	3.349e-253	782.0	COG0454@1|root,COG0456@2|Bacteria,1PMA3@1224|Proteobacteria,2TUU2@28211|Alphaproteobacteria,3JV3R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5100252_2	1297865.APJD01000009_gene2989	3.955e-241	750.0	2A8NZ@1|root,30XRJ@2|Bacteria,1MVEQ@1224|Proteobacteria,2U0DB@28211|Alphaproteobacteria,3JX3P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5100252_4	1297865.APJD01000009_gene2990	2.434e-182	583.0	COG0476@1|root,COG0476@2|Bacteria,1QUMS@1224|Proteobacteria,2TT9V@28211|Alphaproteobacteria,3JX8K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	ThiF family	-	-	2.7.7.80	ko:K21029	ko04122,map04122	-	R07459	RC00043	ko00000,ko00001,ko01000	-	-	-	ThiF
SX3_k127_5100252_3	1297865.APJD01000009_gene2991	1.447e-227	706.0	2BZD3@1|root,2Z914@2|Bacteria,1R4D8@1224|Proteobacteria,2TTPQ@28211|Alphaproteobacteria,3JS4C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5100252_9	1297865.APJD01000036_gene1571	2.059e-51	183.0	COG4298@1|root,COG4298@2|Bacteria,1RIZJ@1224|Proteobacteria,2U97E@28211|Alphaproteobacteria,3JZPZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	yiaA/B two helix domain	MA20_06245	-	-	-	-	-	-	-	-	-	-	-	YiaAB
SX3_k127_5100252_5	1297865.APJD01000036_gene1570	1.522e-124	401.0	COG1842@1|root,COG1842@2|Bacteria,1R41V@1224|Proteobacteria,2U28E@28211|Alphaproteobacteria,3JWYW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	PspA/IM30 family	MA20_06250	-	-	-	-	-	-	-	-	-	-	-	PspA_IM30
SX3_k127_5100252_6	1297865.APJD01000036_gene1569	2.302e-120	387.0	COG1309@1|root,COG1309@2|Bacteria,1N0XU@1224|Proteobacteria,2U82V@28211|Alphaproteobacteria,3JRHE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WHG domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
SX3_k127_5100252_0	1297865.APJD01000036_gene1568	1.725e-262	809.0	COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,2TT62@28211|Alphaproteobacteria,3JSQG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Fatty acid desaturase	-	-	1.14.19.1	ko:K00507	ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212	-	R02222	RC00917	ko00000,ko00001,ko01000,ko01004	-	-	-	FA_desaturase
SX3_k127_5100252_7	1297865.APJD01000036_gene1567	4.725e-74	257.0	COG1917@1|root,COG1917@2|Bacteria,1RD6M@1224|Proteobacteria,2U811@28211|Alphaproteobacteria,3JYUB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_5100252_8	172088.AUGA01000005_gene7937	5.895e-59	207.0	2BVSM@1|root,2ZFM6@2|Bacteria,1RKNV@1224|Proteobacteria,2UAEZ@28211|Alphaproteobacteria,3JZPD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5100252_10	1297865.APJD01000036_gene1565	6.763e-29	115.0	COG0528@1|root,COG0528@2|Bacteria,1N1F1@1224|Proteobacteria,2U1KT@28211|Alphaproteobacteria,3JV10@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Amino acid kinase family	-	-	-	ko:K00947	-	-	-	-	ko00000	-	-	-	AA_kinase
SX3_k127_51094_3	1304878.AUGD01000021_gene3768	9.789e-93	304.0	COG1592@1|root,COG1592@2|Bacteria,1RC1F@1224|Proteobacteria,2V6MH@28211|Alphaproteobacteria,3K2CK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Rubrerythrin	-	-	-	-	-	-	-	-	-	-	-	-	Rubrerythrin
SX3_k127_51094_2	1304878.AUGD01000021_gene3767	8.615e-127	408.0	COG1814@1|root,COG1814@2|Bacteria,1MUZE@1224|Proteobacteria,2TT6M@28211|Alphaproteobacteria,3JRM0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	VIT family	-	-	-	-	-	-	-	-	-	-	-	-	VIT1
SX3_k127_51094_5	1304878.AUGD01000021_gene3766	4.265e-49	184.0	COG3038@1|root,COG3038@2|Bacteria,1Q7UH@1224|Proteobacteria,2UUHP@28211|Alphaproteobacteria,3K4UI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Prokaryotic cytochrome b561	-	-	-	-	-	-	-	-	-	-	-	-	Ni_hydr_CYTB
SX3_k127_51094_1	452662.SJA_C1-19880	4.961e-138	446.0	COG0583@1|root,COG0583@2|Bacteria,1PM16@1224|Proteobacteria,2U1M0@28211|Alphaproteobacteria,2K5M9@204457|Sphingomonadales	204457|Sphingomonadales	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_51094_6	1185766.DL1_16675	9.021e-29	124.0	2AGWW@1|root,3175A@2|Bacteria,1NJ52@1224|Proteobacteria,2UN7Q@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_51094_4	323098.Nwi_2100	4.337e-65	224.0	COG2963@1|root,COG2963@2|Bacteria,1RHKX@1224|Proteobacteria,2U9TV@28211|Alphaproteobacteria,3JZI8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Transposase	-	-	-	ko:K07483	-	-	-	-	ko00000	-	-	-	HTH_Tnp_1
SX3_k127_51094_0	1297865.APJD01000068_gene5775	3.512e-214	666.0	COG2801@1|root,COG2963@1|root,COG2801@2|Bacteria,COG2963@2|Bacteria,1PBHA@1224|Proteobacteria,2TRQF@28211|Alphaproteobacteria,3JS1E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	leucine-zipper of insertion element IS481	-	-	2.7.7.49	ko:K00986,ko:K07497	-	-	-	-	ko00000,ko01000	-	-	-	HTH_32,rve
SX3_k127_5120081_3	1297865.APJD01000005_gene3662	8.563e-86	284.0	COG0761@1|root,COG0761@2|Bacteria,1MU7G@1224|Proteobacteria,2TRNR@28211|Alphaproteobacteria,3JS8Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IM	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis	ispH	-	1.17.7.4	ko:K03527	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05884,R08210	RC01137,RC01487	ko00000,ko00001,ko00002,ko01000	-	-	-	LYTB
SX3_k127_5120081_0	1297865.APJD01000005_gene3661	7.654e-258	795.0	COG0535@1|root,COG0535@2|Bacteria,1MXM1@1224|Proteobacteria,2TT7D@28211|Alphaproteobacteria,3JVYI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF3463)	MA20_16040	-	-	-	-	-	-	-	-	-	-	-	DUF3463,Fer4_12,Fer4_14,Radical_SAM
SX3_k127_5120081_1	1297865.APJD01000005_gene3660	1.88e-188	591.0	COG5495@1|root,COG5495@2|Bacteria,1RDUW@1224|Proteobacteria,2VGE0@28211|Alphaproteobacteria,3JWCT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF2520)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2520,Rossmann-like
SX3_k127_5120081_2	1297865.APJD01000005_gene3659	1.321e-107	348.0	COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2TRMV@28211|Alphaproteobacteria,3JR8B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	addA	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
SX3_k127_5121676_15	1230476.C207_03664	2.507e-237	737.0	COG1744@1|root,COG1744@2|Bacteria,1MWTM@1224|Proteobacteria,2TSZU@28211|Alphaproteobacteria,3JV4E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter substrate-binding protein PnrA-like	-	-	-	ko:K02058	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	Bmp
SX3_k127_5121676_18	1297865.APJD01000007_gene2230	4.749e-221	709.0	COG4603@1|root,COG4603@2|Bacteria,1MX6V@1224|Proteobacteria,2TUGD@28211|Alphaproteobacteria,3JTD2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Branched-chain amino acid transport system / permease component	-	-	-	ko:K02057	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	BPD_transp_2
SX3_k127_5121676_23	1297865.APJD01000007_gene2229	1.006e-199	622.0	COG1079@1|root,COG1079@2|Bacteria,1MVDQ@1224|Proteobacteria,2TSGJ@28211|Alphaproteobacteria,3JRUB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Branched-chain amino acid transport system / permease component	-	-	-	ko:K02057	-	M00221	-	-	ko00000,ko00002,ko02000	3.A.1.2	-	-	BPD_transp_2
SX3_k127_5121676_34	1297865.APJD01000007_gene2228	2.518e-153	484.0	COG1335@1|root,COG1335@2|Bacteria,1MV0W@1224|Proteobacteria,2TSQZ@28211|Alphaproteobacteria,3JU15@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
SX3_k127_5121676_7	1297865.APJD01000007_gene2227	0.0	1005.0	COG3845@1|root,COG3845@2|Bacteria,1NT0H@1224|Proteobacteria,2UPJ8@28211|Alphaproteobacteria,3JTM8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	3.6.3.17	ko:K02056	-	M00221	-	-	ko00000,ko00002,ko01000,ko02000	3.A.1.2	-	-	ABC_tran
SX3_k127_5121676_19	1297865.APJD01000007_gene2226	3.451e-215	668.0	COG0726@1|root,COG0726@2|Bacteria,1MV3V@1224|Proteobacteria,2TR0I@28211|Alphaproteobacteria,3JQQA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Polysaccharide deacetylase	MA20_34855	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_5121676_41	1297865.APJD01000007_gene2225	2.271e-87	290.0	COG2164@1|root,COG2164@2|Bacteria,1RCY5@1224|Proteobacteria,2U5NN@28211|Alphaproteobacteria,3JY4J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3830)	MA20_34860	-	-	-	-	-	-	-	-	-	-	-	DUF3830
SX3_k127_5121676_39	1230476.C207_03671	7.891e-136	437.0	COG1028@1|root,COG1028@2|Bacteria,1MVA5@1224|Proteobacteria,2U2EZ@28211|Alphaproteobacteria,3JWQS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_21425	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short,adh_short_C2
SX3_k127_5121676_46	398525.KB900701_gene3363	9.376e-28	116.0	2AFVP@1|root,315YA@2|Bacteria,1NFRS@1224|Proteobacteria,2UH3A@28211|Alphaproteobacteria,3K19X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5121676_24	1297865.APJD01000007_gene2222	1.362e-199	623.0	COG2017@1|root,COG2017@2|Bacteria,1MVR4@1224|Proteobacteria,2TZZR@28211|Alphaproteobacteria,3JUE5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Aldose 1-epimerase	-	-	-	-	-	-	-	-	-	-	-	-	Aldose_epim
SX3_k127_5121676_36	1297865.APJD01000007_gene2221	5.093e-152	482.0	COG1024@1|root,COG1024@2|Bacteria,1Q67Q@1224|Proteobacteria,2U2T5@28211|Alphaproteobacteria,3JRNJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_21535	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_5121676_42	1297865.APJD01000007_gene2220	8.747e-85	282.0	COG1846@1|root,COG1846@2|Bacteria,1RM6J@1224|Proteobacteria,2U5NG@28211|Alphaproteobacteria,3K6CW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_5121676_28	1230476.C207_03675	6.339e-176	554.0	COG5607@1|root,COG5607@2|Bacteria,1R678@1224|Proteobacteria,2TTJQ@28211|Alphaproteobacteria,3JRFF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CHAD	-	-	-	-	-	-	-	-	-	-	-	-	CHAD
SX3_k127_5121676_10	1297865.APJD01000007_gene2218	8.747e-265	818.0	COG0659@1|root,COG0659@2|Bacteria,1MVWV@1224|Proteobacteria,2TUH6@28211|Alphaproteobacteria,3JUYP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sulfate transporter	-	-	-	ko:K03321	-	-	-	-	ko00000,ko02000	2.A.53.3	-	-	STAS,Sulfate_transp
SX3_k127_5121676_20	1297865.APJD01000007_gene2217	1.816e-207	648.0	COG1609@1|root,COG1609@2|Bacteria,1MUEP@1224|Proteobacteria,2TQM4@28211|Alphaproteobacteria,3JXQM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn _helix lactose operon repressor	-	-	-	-	-	-	-	-	-	-	-	-	LacI,Peripla_BP_1,Peripla_BP_3
SX3_k127_5121676_26	1297865.APJD01000007_gene2216	4.526e-192	604.0	COG5285@1|root,COG5285@2|Bacteria,1MWD5@1224|Proteobacteria,2TWPJ@28211|Alphaproteobacteria,3JVXM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phytanoyl-CoA dioxygenase (PhyH)	-	-	-	-	-	-	-	-	-	-	-	-	PhyH
SX3_k127_5121676_9	1297865.APJD01000007_gene2215	7.141e-288	886.0	COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,2TQVP@28211|Alphaproteobacteria,3JRCZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	ko:K08173	-	-	-	-	ko00000,ko02000	2.A.1.6	-	-	MFS_1,Sugar_tr
SX3_k127_5121676_25	1297865.APJD01000007_gene2214	8.609e-198	615.0	COG1082@1|root,COG1082@2|Bacteria,1R4JM@1224|Proteobacteria,2TREG@28211|Alphaproteobacteria,3JU6Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Xylose isomerase domain protein TIM barrel	-	-	-	-	-	-	-	-	-	-	-	-	AP_endonuc_2
SX3_k127_5121676_6	1297865.APJD01000007_gene2213	0.0	1018.0	28KNR@1|root,2Z9F7@2|Bacteria,1NC4P@1224|Proteobacteria,2TSTI@28211|Alphaproteobacteria,3JTPT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyl hydrolase family 79, N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_79n
SX3_k127_5121676_27	1230476.C207_03688	4.468e-183	573.0	COG1192@1|root,COG1192@2|Bacteria,1R923@1224|Proteobacteria,2U0YP@28211|Alphaproteobacteria,3JUUH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	ATPase MipZ	-	-	-	-	-	-	-	-	-	-	-	-	MipZ
SX3_k127_5121676_31	1297865.APJD01000007_gene2211	4.401e-166	523.0	COG1024@1|root,COG1024@2|Bacteria,1R3Q4@1224|Proteobacteria,2TRE2@28211|Alphaproteobacteria,3JV6K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_5121676_40	1297865.APJD01000007_gene2210	4.536e-112	363.0	COG1309@1|root,COG1309@2|Bacteria,1N1Q3@1224|Proteobacteria,2U4MU@28211|Alphaproteobacteria,3JX3U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_5121676_35	1297865.APJD01000007_gene2209	6.779e-153	484.0	COG1028@1|root,COG1028@2|Bacteria,1MWJQ@1224|Proteobacteria,2TVRP@28211|Alphaproteobacteria,3JWPZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_5121676_21	1297865.APJD01000007_gene2208	4.706e-207	645.0	COG0625@1|root,COG0625@2|Bacteria,1P71B@1224|Proteobacteria,2U1A5@28211|Alphaproteobacteria,3JXHU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_N_3
SX3_k127_5121676_17	1297865.APJD01000007_gene2207	6.994e-227	704.0	COG2141@1|root,COG2141@2|Bacteria,1MUTJ@1224|Proteobacteria,2TTZI@28211|Alphaproteobacteria,3JRIB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_5121676_5	1297865.APJD01000007_gene2206	0.0	1064.0	COG3203@1|root,COG3203@2|Bacteria,1MXN6@1224|Proteobacteria,2TSH7@28211|Alphaproteobacteria,3JQSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	ropAch1	-	-	-	-	-	-	-	-	-	-	-	Porin_2
SX3_k127_5121676_33	1297865.APJD01000007_gene2205	8.94e-154	488.0	COG3971@1|root,COG3971@2|Bacteria,1RGHI@1224|Proteobacteria,2V4BI@28211|Alphaproteobacteria,3JW69@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	2-keto-4-pentenoate hydratase	-	-	-	-	-	-	-	-	-	-	-	-	FAA_hydrolase
SX3_k127_5121676_13	1297865.APJD01000007_gene2204	5.298e-244	758.0	COG0657@1|root,COG0657@2|Bacteria,1RD8A@1224|Proteobacteria,2U0DE@28211|Alphaproteobacteria,3JVW6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Steryl acetyl hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_3
SX3_k127_5121676_38	1121106.JQKB01000013_gene5477	4.519e-139	463.0	COG1167@1|root,COG1167@2|Bacteria,1MVGT@1224|Proteobacteria,2TRK7@28211|Alphaproteobacteria,2JQ3W@204441|Rhodospirillales	204441|Rhodospirillales	K	COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	-	-	-	ko:K00375	-	-	-	-	ko00000,ko03000	-	-	-	Aminotran_1_2,GntR
SX3_k127_5121676_44	1297865.APJD01000007_gene2202	4.072e-54	190.0	COG5476@1|root,COG5476@2|Bacteria,1MX4P@1224|Proteobacteria,2TS1C@28211|Alphaproteobacteria,3JRKN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1485,MlrC_C
SX3_k127_5121676_43	1297865.APJD01000007_gene2190	1.169e-80	269.0	COG3631@1|root,COG3631@2|Bacteria,1RD0K@1224|Proteobacteria,2UGFJ@28211|Alphaproteobacteria,3K25R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	ko:K06893	-	-	-	-	ko00000	-	-	-	SnoaL_2
SX3_k127_5121676_29	1297865.APJD01000007_gene2189	4.582e-173	548.0	28MCI@1|root,2Z9MG@2|Bacteria,1R98H@1224|Proteobacteria,2UFE3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	MoaF C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	MoaF,MoaF_C
SX3_k127_5121676_32	1297865.APJD01000007_gene2188	1.432e-154	491.0	COG1028@1|root,COG1028@2|Bacteria,1MXVZ@1224|Proteobacteria,2TVJW@28211|Alphaproteobacteria,3JXVQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.304,1.1.1.76	ko:K18009	ko00650,map00650	-	R03707,R09078,R10505	RC00205,RC00525	ko00000,ko00001,ko01000	-	-	-	adh_short_C2
SX3_k127_5121676_47	1380367.JIBC01000004_gene2482	5.527e-18	93.0	COG2091@1|root,COG2091@2|Bacteria,1MZHC@1224|Proteobacteria,2UFA4@28211|Alphaproteobacteria,3ZYPZ@60136|Sulfitobacter	28211|Alphaproteobacteria	H	4'-phosphopantetheinyl transferase superfamily	-	-	-	ko:K06133	ko00770,map00770	-	R01625	RC00002	ko00000,ko00001,ko01000	-	-	-	ACPS
SX3_k127_5121676_8	1297865.APJD01000007_gene2187	2.31e-309	951.0	COG1169@1|root,COG1169@2|Bacteria,1MVB7@1224|Proteobacteria,2TVN9@28211|Alphaproteobacteria,3K50S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	HQ	chorismate binding enzyme	-	-	5.4.4.2	ko:K02361	ko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130	M00116	R01717	RC00588	ko00000,ko00001,ko00002,ko01000	-	-	-	Chorismate_bind
SX3_k127_5121676_45	1238450.VIBNISOn1_1350053	2.153e-34	134.0	COG1605@1|root,COG1605@2|Bacteria,1N46S@1224|Proteobacteria,1S8RU@1236|Gammaproteobacteria,1Y13H@135623|Vibrionales	135623|Vibrionales	E	Chorismate mutase type II	-	-	4.2.99.21	ko:K04782	ko01053,ko01110,ko01130,map01053,map01110,map01130	-	R06602	RC01549,RC02148	ko00000,ko00001,ko01000	-	-	-	CM_2
SX3_k127_5121676_12	1297865.APJD01000007_gene2186	1.276e-245	766.0	COG2124@1|root,COG2124@2|Bacteria,1MV8Q@1224|Proteobacteria,2TRWW@28211|Alphaproteobacteria,3JR28@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_5121676_2	1297865.APJD01000007_gene2185	0.0	1131.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2U0SI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	V	ABC transporter transmembrane region	-	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_5121676_3	1297865.APJD01000007_gene2184	0.0	1079.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2U0IT@28211|Alphaproteobacteria,3K3SY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter transmembrane region	-	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_5121676_11	1297865.APJD01000007_gene2183	5.888e-252	780.0	COG0477@1|root,COG2814@2|Bacteria,1MUZ8@1224|Proteobacteria	1224|Proteobacteria	EGP	Major facilitator Superfamily	-	-	-	ko:K08218	ko01501,map01501	M00628	-	-	ko00000,ko00001,ko00002,ko02000	2.A.1.25	-	-	Acatn,MFS_1
SX3_k127_5121676_22	1297865.APJD01000007_gene2182	1.662e-203	636.0	COG2207@1|root,COG2207@2|Bacteria,1R5XY@1224|Proteobacteria,2UFH2@28211|Alphaproteobacteria,3K5XK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K12243	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18
SX3_k127_5121676_4	1297865.APJD01000007_gene2181	0.0	1073.0	COG1021@1|root,COG1021@2|Bacteria,1NSN8@1224|Proteobacteria,2TVX6@28211|Alphaproteobacteria,3K70R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	AMP-binding enzyme C-terminal domain	entE	-	2.7.7.58,6.3.2.14	ko:K02363	ko01053,ko01110,ko01130,map01053,map01110,map01130	-	R07644	RC00162,RC03046	ko00000,ko00001,ko01000,ko01008	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_5121676_37	1297865.APJD01000007_gene2180	6.916e-147	467.0	COG0500@1|root,COG2226@2|Bacteria,1N3MC@1224|Proteobacteria	1224|Proteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
SX3_k127_5121676_30	1297865.APJD01000007_gene2179	2.994e-166	524.0	COG3208@1|root,COG3208@2|Bacteria,1RGYT@1224|Proteobacteria,2U9ZM@28211|Alphaproteobacteria,3K0UH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase domain	-	-	3.1.2.21	ko:K01071	ko00061,ko01100,map00061,map01100	-	R04014,R08157,R08158	RC00014,RC00039	ko00000,ko00001,ko01000,ko01004	-	-	-	Thioesterase
SX3_k127_5121676_16	1297865.APJD01000007_gene2178	1.171e-235	744.0	COG4693@1|root,COG4693@2|Bacteria,1MXUG@1224|Proteobacteria,2UA56@28211|Alphaproteobacteria,3K4J9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Oxidoreductase family, NAD-binding Rossmann fold	-	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA
SX3_k127_5121676_14	1297865.APJD01000007_gene2177	1.881e-238	743.0	COG1748@1|root,COG1748@2|Bacteria,1RE6H@1224|Proteobacteria,2UVSB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	E	Saccharopine dehydrogenase NADP binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Sacchrp_dh_NADP
SX3_k127_5121676_0	1297865.APJD01000007_gene2176	0.0	3664.0	COG0500@1|root,COG1020@1|root,COG1020@2|Bacteria,COG2226@2|Bacteria,1QK4F@1224|Proteobacteria,2TRUN@28211|Alphaproteobacteria,3JQV9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phosphopantetheine attachment site	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C,Condensation,Methyltransf_12,Methyltransf_23,Nitroreductase,PP-binding,Thioesterase
SX3_k127_5121676_1	1297865.APJD01000007_gene2175	0.0	3231.0	COG1020@1|root,COG1020@2|Bacteria,1QK4F@1224|Proteobacteria,2TRUN@28211|Alphaproteobacteria,3JQV9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phosphopantetheine attachment site	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C,Condensation,Nitroreductase,PP-binding,Thioesterase
SX3_k127_5125012_15	172088.AUGA01000001_gene6300	1.608e-14	74.0	2EHAM@1|root,33B2H@2|Bacteria,1RAIW@1224|Proteobacteria,2U5TZ@28211|Alphaproteobacteria,3JY03@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5125012_14	1297865.APJD01000004_gene5340	8.826e-48	173.0	2DNGD@1|root,32XCZ@2|Bacteria,1RJW1@1224|Proteobacteria,2U9RF@28211|Alphaproteobacteria,3JZJE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5125012_2	1297865.APJD01000004_gene5339	2.721e-209	653.0	COG2038@1|root,COG2038@2|Bacteria,1MVAM@1224|Proteobacteria,2TQS6@28211|Alphaproteobacteria,3JSIN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB)	cobT	GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008939,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.4.2.21	ko:K00768	ko00860,ko01100,map00860,map01100	M00122	R04148	RC00033,RC00063	ko00000,ko00001,ko00002,ko01000	-	-	-	DBI_PRT
SX3_k127_5125012_4	1297865.APJD01000004_gene5338	8.188e-150	476.0	COG0368@1|root,COG0368@2|Bacteria,1RHCC@1224|Proteobacteria,2U97D@28211|Alphaproteobacteria,3JUE6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate	cobS	-	2.7.8.26	ko:K02233	ko00860,ko01100,map00860,map01100	M00122	R05223,R11174	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	CobS
SX3_k127_5125012_7	1297865.APJD01000004_gene5337	4.264e-118	382.0	COG0406@1|root,COG0406@2|Bacteria,1N41V@1224|Proteobacteria,2U09E@28211|Alphaproteobacteria,3JUWF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Phosphoglycerate mutase family	-	-	3.1.3.73	ko:K02226	ko00860,ko01100,map00860,map01100	M00122	R04594,R11173	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	His_Phos_1
SX3_k127_5125012_3	1297865.APJD01000004_gene5336	1.777e-163	516.0	COG1028@1|root,COG1028@2|Bacteria,1MXVZ@1224|Proteobacteria,2TSQ4@28211|Alphaproteobacteria,3JQZU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_5125012_0	1297865.APJD01000004_gene5335	0.0	1063.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSRS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	methyl-accepting chemotaxis	MA20_04065	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	MCPsignal,PAS_3,PAS_4
SX3_k127_5125012_6	1297865.APJD01000004_gene5334	1.012e-144	460.0	COG0625@1|root,COG0625@2|Bacteria,1PENB@1224|Proteobacteria,2TRVC@28211|Alphaproteobacteria,3JVHH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	gstch9	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N_3
SX3_k127_5125012_12	1297865.APJD01000004_gene5333	6.958e-79	265.0	COG3631@1|root,COG3631@2|Bacteria,1RDKP@1224|Proteobacteria,2U8HD@28211|Alphaproteobacteria,3JYXV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
SX3_k127_5125012_1	1297865.APJD01000004_gene5332	2.939e-257	801.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2TRWZ@28211|Alphaproteobacteria,3JXCI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_5125012_11	1297865.APJD01000004_gene5331	5.488e-81	272.0	COG3795@1|root,COG3795@2|Bacteria,1RCZT@1224|Proteobacteria,2U735@28211|Alphaproteobacteria,3JZ56@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YCII-related domain	-	-	-	-	-	-	-	-	-	-	-	-	YCII
SX3_k127_5125012_10	1297865.APJD01000004_gene5330	8.118e-84	282.0	COG3795@1|root,COG3795@2|Bacteria,1RCZT@1224|Proteobacteria,2U735@28211|Alphaproteobacteria,3JY2H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YCII-related domain	MA20_04055	-	-	-	-	-	-	-	-	-	-	-	YCII
SX3_k127_5125012_13	1297865.APJD01000004_gene5329	1.383e-75	255.0	2DBI3@1|root,32TXG@2|Bacteria,1RF32@1224|Proteobacteria,2U8BP@28211|Alphaproteobacteria,3JZ4Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	YCII
SX3_k127_5125012_5	1297865.APJD01000004_gene5328	1.826e-147	467.0	COG1309@1|root,COG1309@2|Bacteria,1MUUY@1224|Proteobacteria,2TUIH@28211|Alphaproteobacteria,3JR8S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WHG domain	MA20_04045	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
SX3_k127_5125012_8	1297865.APJD01000004_gene5327	5.678e-107	347.0	2AS6X@1|root,31HJW@2|Bacteria,1RGYJ@1224|Proteobacteria,2U9UH@28211|Alphaproteobacteria,3JUQB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2852)	MA20_04040	-	-	-	-	-	-	-	-	-	-	-	DUF2852
SX3_k127_5125012_9	1297865.APJD01000004_gene5326	6.625e-98	322.0	COG1045@1|root,COG1045@2|Bacteria,1R4TN@1224|Proteobacteria,2TU90@28211|Alphaproteobacteria,3JVUE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Serine acetyltransferase, N-terminal	-	-	2.3.1.30	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	M00021	R00586	RC00004,RC00041	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,SATase_N
SX3_k127_5142464_3	1297865.APJD01000004_gene5396	9.502e-116	372.0	COG5516@1|root,COG5516@2|Bacteria,1N7M4@1224|Proteobacteria,2UGD1@28211|Alphaproteobacteria,3K1B1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative stress-induced transcription regulator	-	-	-	-	-	-	-	-	-	-	-	-	ABATE,zf-CGNR
SX3_k127_5142464_1	1297865.APJD01000004_gene5397	6.134e-141	448.0	COG1651@1|root,COG1651@2|Bacteria,1MX2T@1224|Proteobacteria,2TRAG@28211|Alphaproteobacteria,3JSDD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Thioredoxin	MA20_20720	-	-	-	-	-	-	-	-	-	-	-	DSBA,Thioredoxin_4
SX3_k127_5142464_0	1230476.C207_02644	4.474e-147	468.0	COG0730@1|root,COG0730@2|Bacteria,1MVBS@1224|Proteobacteria,2TQW0@28211|Alphaproteobacteria,3JUVG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfite exporter TauE/SafE	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_5142464_2	1297865.APJD01000004_gene5399	7.38e-139	447.0	COG1346@1|root,COG1346@2|Bacteria,1MV81@1224|Proteobacteria,2TSP3@28211|Alphaproteobacteria,3JSP7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	LrgB-like family	lrgB	-	-	-	-	-	-	-	-	-	-	-	LrgB
SX3_k127_5142464_4	1297865.APJD01000004_gene5400	2.496e-66	228.0	COG1380@1|root,COG1380@2|Bacteria,1N753@1224|Proteobacteria,2UFFT@28211|Alphaproteobacteria,3JZ5D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	LrgA family	-	-	-	ko:K06518	-	-	-	-	ko00000,ko02000	1.E.14.2	-	-	LrgA
SX3_k127_5155591_2	1297865.APJD01000006_gene4439	1.042e-130	416.0	COG4948@1|root,COG4948@2|Bacteria,1MVFW@1224|Proteobacteria,2TU7R@28211|Alphaproteobacteria,3JSJX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	MA20_01110	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0009987,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0022607,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0046872,GO:0047808,GO:0051259,GO:0051260,GO:0065003,GO:0071840	4.2.1.81	ko:K22209	-	-	-	-	ko00000,ko01000	-	-	-	MR_MLE_C,MR_MLE_N
SX3_k127_5155591_3	1297865.APJD01000006_gene4440	5.436e-61	211.0	2DGBX@1|root,2ZVCE@2|Bacteria,1RBSZ@1224|Proteobacteria,2U5Z9@28211|Alphaproteobacteria,3JYI7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5155591_1	1297865.APJD01000006_gene4441	1.451e-168	532.0	COG3637@1|root,COG3637@2|Bacteria,1MWEG@1224|Proteobacteria,2TSCB@28211|Alphaproteobacteria,3JTF0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_5155591_0	1297865.APJD01000006_gene4442	3.25e-186	583.0	28HAQ@1|root,2Z7N0@2|Bacteria,1N5R2@1224|Proteobacteria,2TSE5@28211|Alphaproteobacteria,3JWU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF2157
SX3_k127_5157866_17	1297865.APJD01000005_gene3930	1.913e-50	179.0	COG2243@1|root,COG2243@2|Bacteria,1MXWZ@1224|Proteobacteria,2TUI6@28211|Alphaproteobacteria,3JS40@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Tetrapyrrole (Corrin/Porphyrin) Methylases	cobF	-	2.1.1.152	ko:K02228	ko00860,ko01100,map00860,map01100	-	R05219	RC00003,RC00923,RC02890	ko00000,ko00001,ko01000	-	-	-	TP_methylase
SX3_k127_5157866_18	1230476.C207_01936	5.867e-31	123.0	2CBGE@1|root,2ZZAR@2|Bacteria,1MZRP@1224|Proteobacteria,2UDHF@28211|Alphaproteobacteria,3K06Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5157866_15	398525.KB900701_gene3964	2.828e-80	269.0	COG2128@1|root,COG2128@2|Bacteria,1MUDM@1224|Proteobacteria,2TTY5@28211|Alphaproteobacteria,3JVBY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	ahpD	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_5157866_5	1297865.APJD01000005_gene3933	7.205e-205	638.0	COG2207@1|root,COG2207@2|Bacteria,1PF5X@1224|Proteobacteria,2TWRK@28211|Alphaproteobacteria,3JS75@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cupin	-	-	-	ko:K18991	-	M00647	-	-	ko00000,ko00002,ko03000	-	-	-	Cupin_6,HTH_18
SX3_k127_5157866_14	1429916.X566_02915	1.847e-112	370.0	COG2197@1|root,COG2197@2|Bacteria,1MVNV@1224|Proteobacteria,2TTK7@28211|Alphaproteobacteria,3JVF1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	MA20_23080	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_5157866_0	1297865.APJD01000005_gene3935	0.0	2227.0	COG0642@1|root,COG0784@1|root,COG1457@1|root,COG0784@2|Bacteria,COG1457@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TQWE@28211|Alphaproteobacteria,3JQW8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	MA20_23075	-	-	ko:K20971	ko02025,map02025	-	-	-	ko00000,ko00001,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS_3,Response_reg
SX3_k127_5157866_3	1230476.C207_01939	2.777e-277	853.0	COG0683@1|root,COG0683@2|Bacteria,1MU8V@1224|Proteobacteria,2TS3I@28211|Alphaproteobacteria,3JRX8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_23070	-	-	ko:K11959	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	Peripla_BP_5
SX3_k127_5157866_7	1297865.APJD01000005_gene3937	7.127e-189	593.0	COG0559@1|root,COG0559@2|Bacteria,1MVND@1224|Proteobacteria,2TRMA@28211|Alphaproteobacteria,3JQWJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_23065	-	-	ko:K11960	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
SX3_k127_5157866_4	1297865.APJD01000005_gene3938	6.442e-235	737.0	COG4177@1|root,COG4177@2|Bacteria,1MUPI@1224|Proteobacteria,2TTN2@28211|Alphaproteobacteria,3JUQZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K11961	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
SX3_k127_5157866_10	1297865.APJD01000005_gene3939	1.762e-161	509.0	COG4674@1|root,COG4674@2|Bacteria,1MUBR@1224|Proteobacteria,2TQVJ@28211|Alphaproteobacteria,3JSTG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter, ATP-binding protein	MA20_23055	-	-	ko:K11962	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_5157866_13	1297865.APJD01000005_gene3940	2.612e-140	447.0	COG0410@1|root,COG0410@2|Bacteria,1MU4Z@1224|Proteobacteria,2TS23@28211|Alphaproteobacteria,3JSKN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	MA20_23050	-	-	ko:K11963	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran
SX3_k127_5157866_2	1230476.C207_01944	1.363e-283	870.0	COG2421@1|root,COG2421@2|Bacteria,1MVRT@1224|Proteobacteria,2U0J5@28211|Alphaproteobacteria,3JRSW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Acetamidase/Formamidase family	fmdA	-	3.5.1.49	ko:K01455	ko00460,ko00630,ko00910,ko01200,map00460,map00630,map00910,map01200	-	R00524	RC02432,RC02810	ko00000,ko00001,ko01000	-	-	-	FmdA_AmdA
SX3_k127_5157866_16	1297865.APJD01000005_gene3942	1.311e-70	259.0	COG2331@1|root,COG2331@2|Bacteria,1NABD@1224|Proteobacteria,2UDQN@28211|Alphaproteobacteria,3JZ8D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative regulatory protein	MA20_23040	-	-	-	-	-	-	-	-	-	-	-	Zn-ribbon_8
SX3_k127_5157866_9	1297865.APJD01000005_gene3943	5.076e-163	525.0	COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,2TSH9@28211|Alphaproteobacteria,3JQW2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ABC transporter	MA20_34180	-	-	ko:K02049,ko:K15555	ko00920,ko02010,map00920,map02010	M00188,M00436	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.16,3.A.1.17,3.A.1.17.2	-	-	ABC_tran
SX3_k127_5157866_11	1297865.APJD01000005_gene3944	6.85e-157	499.0	COG0600@1|root,COG0600@2|Bacteria,1MWDJ@1224|Proteobacteria,2TRDG@28211|Alphaproteobacteria,3JRXD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_34185	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_5157866_6	1297865.APJD01000005_gene3945	2.071e-202	631.0	COG0715@1|root,COG0715@2|Bacteria,1MVJA@1224|Proteobacteria,2TTB8@28211|Alphaproteobacteria,3JVA6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	MA20_34190	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1,NMT1_2
SX3_k127_5157866_12	1297865.APJD01000005_gene3946	3.85e-156	500.0	COG2188@1|root,COG2188@2|Bacteria,1MVFM@1224|Proteobacteria,2U5HC@28211|Alphaproteobacteria,3JWEM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	UTRA	MA20_34195	-	-	ko:K05836	-	-	-	-	ko00000,ko03000	-	-	-	GntR,UTRA
SX3_k127_5157866_1	1297865.APJD01000005_gene3947	1.341e-294	905.0	COG0402@1|root,COG0402@2|Bacteria,1MUFE@1224|Proteobacteria,2TR3A@28211|Alphaproteobacteria,3JRSG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Amidohydrolase family	hutF	-	3.5.3.13	ko:K05603	ko00340,map00340	-	R02286	RC00682	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1
SX3_k127_5157866_8	1297865.APJD01000005_gene3948	1.005e-176	561.0	COG1228@1|root,COG1228@2|Bacteria,1MUYR@1224|Proteobacteria,2TSA1@28211|Alphaproteobacteria,3JVJX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	imidazolonepropionase activity	hutI	-	3.5.2.7	ko:K01468	ko00340,ko01100,map00340,map01100	M00045	R02288	RC00683	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
SX3_k127_5165090_5	1297865.APJD01000005_gene3822	1.071e-64	221.0	COG1905@1|root,COG1905@2|Bacteria,1RHBU@1224|Proteobacteria,2U72T@28211|Alphaproteobacteria,3JR46@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Thioredoxin-like [2Fe-2S] ferredoxin	fdsG	-	-	ko:K00127	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001	-	-	-	2Fe-2S_thioredx
SX3_k127_5165090_2	1297865.APJD01000005_gene3821	0.0	1045.0	COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,2TR1V@28211|Alphaproteobacteria,3JRTE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region	fdsB	-	1.6.5.3	ko:K00124,ko:K00335	ko00190,ko00630,ko00680,ko01100,ko01120,ko01200,map00190,map00630,map00680,map01100,map01120,map01200	M00144	R00519,R11945	RC00061,RC02796	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Complex1_51K,NADH_4Fe-4S,SLBB
SX3_k127_5165090_0	1297865.APJD01000005_gene3820	0.0	1999.0	COG3383@1|root,COG3383@2|Bacteria,1QTZB@1224|Proteobacteria,2TVZI@28211|Alphaproteobacteria,3JTEA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Formate dehydrogenase, alpha subunit	fdsA	-	1.17.1.9	ko:K00123	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	Fer2_4,Fer4,Fer4_7,Fer4_9,Molybdop_Fe4S4,Molybdopterin,Molydop_binding,NADH-G_4Fe-4S_3
SX3_k127_5165090_3	1297865.APJD01000005_gene3819	2.172e-169	534.0	COG1526@1|root,COG1526@2|Bacteria,1NRU0@1224|Proteobacteria,2TUD2@28211|Alphaproteobacteria,3JSY6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH	fdhD	-	-	ko:K02379	-	-	-	-	ko00000	-	-	-	FdhD-NarQ
SX3_k127_5165090_6	1038860.AXAP01000079_gene1492	4.219e-24	105.0	2E4CR@1|root,32Z86@2|Bacteria,1N7UZ@1224|Proteobacteria,2UF9N@28211|Alphaproteobacteria,3K0B2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NADH-dependant formate dehydrogenase delta subunit FdsD	fdsD	-	1.17.1.9	ko:K00126	ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200	-	R00519	RC02796	ko00000,ko00001,ko01000	-	-	-	FdsD
SX3_k127_5165090_1	1297865.APJD01000005_gene3817	0.0	1950.0	COG1391@1|root,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,2TRY7@28211|Alphaproteobacteria,3JR47@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell	glnE	GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090	2.7.7.42,2.7.7.89	ko:K00982	-	-	-	-	ko00000,ko01000	-	-	-	GlnD_UR_UTase,GlnE
SX3_k127_5165090_4	1297865.APJD01000005_gene3816	2.917e-118	380.0	COG0642@1|root,COG0642@2|Bacteria,1QTVA@1224|Proteobacteria,2U5EI@28211|Alphaproteobacteria,3JRC5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	MA20_15235	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
SX3_k127_5167287_8	1297865.APJD01000020_gene315	9.209e-31	121.0	COG2907@1|root,COG2907@2|Bacteria,1MV4Z@1224|Proteobacteria,2TQUH@28211|Alphaproteobacteria,3JU95@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin containing amine oxidoreductase	-	-	-	ko:K06954	-	-	-	-	ko00000	-	-	-	Amino_oxidase
SX3_k127_5167287_5	1230476.C207_00995	1.942e-106	349.0	COG1595@1|root,COG1595@2|Bacteria,1RHRR@1224|Proteobacteria,2U9G0@28211|Alphaproteobacteria,3JXTC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	rpoE	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4,Sigma70_r4_2
SX3_k127_5167287_3	1297865.APJD01000020_gene317	4.698e-140	445.0	COG3806@1|root,COG3806@2|Bacteria,1RI6T@1224|Proteobacteria,2TVH9@28211|Alphaproteobacteria,3JTPH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	ChrR Cupin-like domain	chrR	-	-	ko:K07167	-	-	-	-	ko00000	-	-	-	Cupin_7,zf-HC2
SX3_k127_5167287_2	1297865.APJD01000020_gene318	1.744e-182	571.0	COG3752@1|root,COG3752@2|Bacteria,1MXCP@1224|Proteobacteria,2TTEP@28211|Alphaproteobacteria,3JT52@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	3-oxo-5-alpha-steroid 4-dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	DUF1295
SX3_k127_5167287_6	1298867.AUES01000074_gene4455	1.197e-55	200.0	COG4852@1|root,COG4852@2|Bacteria,1MZHP@1224|Proteobacteria,2UBSF@28211|Alphaproteobacteria,3K0TU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted membrane protein (DUF2177)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2177
SX3_k127_5167287_4	1230476.C207_06970	8.589e-138	454.0	COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2TSN8@28211|Alphaproteobacteria,3JQRY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	-	-	-	-	-	-	-	-	-	-	-	-	OEP
SX3_k127_5167287_1	1297865.APJD01000020_gene321	1.288e-305	939.0	COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,2TSB6@28211|Alphaproteobacteria,3JR4W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	mdtA	-	-	ko:K07799,ko:K18990	ko02020,map02020	M00648,M00720	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2.30,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_5167287_0	1297865.APJD01000020_gene322	0.0	1948.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JSVA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	mdtB	-	-	ko:K07788	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
SX3_k127_5167287_7	172088.AUGA01000052_gene2753	3.859e-35	139.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JU8M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	mdtC	-	-	ko:K07789	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
SX3_k127_5178508_6	1297865.APJD01000028_gene5224	3.298e-41	152.0	COG5568@1|root,COG5568@2|Bacteria,1N9BT@1224|Proteobacteria,2UFNF@28211|Alphaproteobacteria,3K04V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1150)	MA20_24245	-	-	-	-	-	-	-	-	-	-	-	DUF1150
SX3_k127_5178508_5	1230476.C207_02259	4.363e-85	283.0	COG0071@1|root,COG0071@2|Bacteria,1R9Y1@1224|Proteobacteria,2UA1J@28211|Alphaproteobacteria,3JT6X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the small heat shock protein (HSP20) family	hspH	-	-	ko:K04080	-	-	-	-	ko00000,ko03110	-	-	-	HSP20
SX3_k127_5178508_2	1297865.APJD01000028_gene5226	5.157e-226	707.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,3JQYC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system	ugpC	-	3.6.3.20	ko:K05816	ko02010,map02010	M00198	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.1.3	-	-	ABC_tran,TOBE_2
SX3_k127_5178508_4	1297865.APJD01000028_gene5227	1.395e-168	539.0	COG0395@1|root,COG0395@2|Bacteria,1MUWS@1224|Proteobacteria,2TSYA@28211|Alphaproteobacteria,3JQM9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	probably responsible for the translocation of the substrate across the membrane	ugpE	-	-	ko:K02026,ko:K05815	ko02010,map02010	M00198,M00207	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.3	-	-	BPD_transp_1
SX3_k127_5178508_3	1230476.C207_02262	1.78e-177	558.0	COG1175@1|root,COG1175@2|Bacteria,1MVAP@1224|Proteobacteria,2TSGN@28211|Alphaproteobacteria,3JQME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	ugpA	-	-	ko:K05814	ko02010,map02010	M00198	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.3	-	-	BPD_transp_1
SX3_k127_5178508_0	1230476.C207_02263	6.785e-285	876.0	COG1653@1|root,COG1653@2|Bacteria,1MVMW@1224|Proteobacteria,2TQKV@28211|Alphaproteobacteria,3JRS3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	ugpB	-	-	ko:K05813	ko02010,map02010	M00198	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.3	-	-	SBP_bac_8
SX3_k127_5178508_1	1230476.C207_02264	5.914e-270	830.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,3JQQD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_24210	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_518883_5	1297865.APJD01000002_gene4124	3.356e-161	508.0	COG2159@1|root,COG2159@2|Bacteria,1MXI7@1224|Proteobacteria,2U15G@28211|Alphaproteobacteria,3JVRP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	4.1.1.46	ko:K07045,ko:K14333,ko:K15063	ko00362,ko00627,ko01120,map00362,map00627,map01120	-	R00821,R09278	RC00390	ko00000,ko00001,ko01000	-	-	-	Amidohydro_2
SX3_k127_518883_6	1230476.C207_01582	9.088e-35	135.0	29EIZ@1|root,301GZ@2|Bacteria,1N7WG@1224|Proteobacteria,2UH07@28211|Alphaproteobacteria,3K1GG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_518883_4	1297865.APJD01000002_gene4121	2.567e-263	812.0	COG1228@1|root,COG1228@2|Bacteria,1PIDC@1224|Proteobacteria,2U3HP@28211|Alphaproteobacteria,3JRPS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1
SX3_k127_518883_3	1297865.APJD01000002_gene4120	6.8e-269	835.0	COG0564@1|root,COG0564@2|Bacteria,1MVDX@1224|Proteobacteria,2TTQC@28211|Alphaproteobacteria,3JQTW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Responsible for synthesis of pseudouridine from uracil	rluC	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.24	ko:K06179	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
SX3_k127_518883_1	1297865.APJD01000002_gene4119	1.246e-287	884.0	COG2256@1|root,COG2256@2|Bacteria,1MUVS@1224|Proteobacteria,2TQVF@28211|Alphaproteobacteria,3JSFI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	AAA C-terminal domain	rarA	GO:0005575,GO:0005622,GO:0005623,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0030894,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576	-	ko:K07478	-	-	-	-	ko00000	-	-	-	AAA,AAA_assoc_2,MgsA_C,RuvB_N
SX3_k127_518883_2	1297865.APJD01000002_gene4118	7.526e-284	878.0	COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2TS6B@28211|Alphaproteobacteria,3JRU8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the peptidase S1C family	htrA2	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051603,GO:0061077,GO:0070011,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564,GO:1901565,GO:1901575	3.4.21.107	ko:K04771	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ_2,Trypsin_2
SX3_k127_518883_0	1297865.APJD01000002_gene4117	0.0	1011.0	COG3746@1|root,COG3746@2|Bacteria,1RA39@1224|Proteobacteria,2U9KD@28211|Alphaproteobacteria,3JQYZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphate-selective porin O and P	oprO	-	-	ko:K07221	-	-	-	-	ko00000,ko02000	1.B.5.1	-	-	Porin_O_P
SX3_k127_5198073_19	1230476.C207_05805	5.294e-11	68.0	COG0346@1|root,COG0346@2|Bacteria,1MXNZ@1224|Proteobacteria,2VG67@28211|Alphaproteobacteria,3JXZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.14	ko:K10621	ko00362,ko00622,ko01120,ko01220,map00362,map00622,map01120,map01220	M00539	R01507,R05248	RC00387,RC01308	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_5198073_3	1230476.C207_00185	8.85e-266	819.0	COG0683@1|root,COG0683@2|Bacteria,1MVV2@1224|Proteobacteria,2TRFU@28211|Alphaproteobacteria,3JQSC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	MA20_13905	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_5198073_11	1297865.APJD01000018_gene5772	2.958e-178	559.0	COG2207@1|root,COG2207@2|Bacteria,1MUV5@1224|Proteobacteria,2TS27@28211|Alphaproteobacteria,3JQSG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,Cupin_2,HTH_18
SX3_k127_5198073_8	1297865.APJD01000018_gene5771	5.557e-203	634.0	COG0559@1|root,COG0559@2|Bacteria,1MVND@1224|Proteobacteria,2TSCF@28211|Alphaproteobacteria,3JQTN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_13915	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_5198073_4	1297865.APJD01000018_gene5770	3.889e-230	714.0	COG4177@1|root,COG4177@2|Bacteria,1PA94@1224|Proteobacteria,2TSNM@28211|Alphaproteobacteria,3JS22@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_5198073_17	1123239.KB898633_gene2977	4.137e-54	200.0	COG0411@1|root,COG0411@2|Bacteria,1TR0P@1239|Firmicutes,4HASG@91061|Bacilli	91061|Bacilli	E	COG0411 ABC-type branched-chain amino acid transport systems, ATPase component	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_5198073_1	1297865.APJD01000018_gene5768	0.0	1462.0	COG0410@1|root,COG5441@1|root,COG0410@2|Bacteria,COG5441@2|Bacteria,1MX45@1224|Proteobacteria,2TUHA@28211|Alphaproteobacteria,3JUZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Uncharacterised protein family (UPF0261)	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran,UPF0261
SX3_k127_5198073_12	1230476.C207_00179	3.484e-170	535.0	COG5564@1|root,COG5564@2|Bacteria,1MXTY@1224|Proteobacteria,2TSJ2@28211|Alphaproteobacteria,3JSJJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Phosphoenolpyruvate hydrolase-like	MA20_13935	-	-	-	-	-	-	-	-	-	-	-	PEP_hydrolase
SX3_k127_5198073_0	1297865.APJD01000018_gene5766	0.0	1670.0	COG2268@1|root,COG2268@2|Bacteria,1P50K@1224|Proteobacteria,2TTVY@28211|Alphaproteobacteria,3JTXC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flotillin	MA20_13940	-	-	-	-	-	-	-	-	-	-	-	Band_7,Flot
SX3_k127_5198073_15	398525.KB900701_gene7433	4.699e-95	311.0	COG2867@1|root,COG2867@2|Bacteria,1QW7G@1224|Proteobacteria,2TWR8@28211|Alphaproteobacteria,3JS86@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Polyketide cyclase / dehydrase and lipid transport	QU41_28450	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
SX3_k127_5198073_20	335659.S23_00140	0.0009869	44.0	COG1680@1|root,COG1680@2|Bacteria,1MY4Y@1224|Proteobacteria,2TYCG@28211|Alphaproteobacteria,3JTS9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_5198073_16	1297865.APJD01000018_gene5764	1.284e-94	312.0	COG3427@1|root,COG3427@2|Bacteria,1R54K@1224|Proteobacteria,2U1PE@28211|Alphaproteobacteria,3JXIM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
SX3_k127_5198073_13	1297865.APJD01000018_gene5763	3.974e-163	524.0	COG1319@1|root,COG1319@2|Bacteria,1NZ7M@1224|Proteobacteria,2TWR9@28211|Alphaproteobacteria,3JTRM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CO dehydrogenase flavoprotein C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	CO_deh_flav_C,FAD_binding_5
SX3_k127_5198073_14	1297865.APJD01000018_gene5762	1.337e-100	330.0	COG2080@1|root,COG2080@2|Bacteria,1MWA6@1224|Proteobacteria,2TS73@28211|Alphaproteobacteria,3JV5C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	MA20_13960	-	1.2.5.3,1.3.7.9	ko:K03518,ko:K04107	ko00362,ko00627,ko01100,ko01120,ko01220,map00362,map00627,map01100,map01120,map01220	-	R05316,R11168	RC00490,RC02800	ko00000,ko00001,ko01000	-	-	-	Fer2,Fer2_2
SX3_k127_5198073_2	1297865.APJD01000018_gene5761	0.0	1071.0	COG1529@1|root,COG1529@2|Bacteria,1NNFR@1224|Proteobacteria,2TVHX@28211|Alphaproteobacteria,3JV7H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	MA20_13965	-	-	-	-	-	-	-	-	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_5198073_5	1297865.APJD01000018_gene5760	1.219e-224	698.0	COG1529@1|root,COG1529@2|Bacteria,1NPGE@1224|Proteobacteria,2TTCC@28211|Alphaproteobacteria,3JTHK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Molybdopterin-binding domain of aldehyde dehydrogenase	MA20_13970	-	-	-	-	-	-	-	-	-	-	-	Ald_Xan_dh_C2
SX3_k127_5198073_10	1297865.APJD01000018_gene5759	3.517e-181	568.0	COG0714@1|root,COG0714@2|Bacteria,1NWIN@1224|Proteobacteria,2TTPB@28211|Alphaproteobacteria,3JVNF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain (dynein-related subfamily)	MA20_13975	-	-	-	-	-	-	-	-	-	-	-	AAA_5
SX3_k127_5198073_6	1297865.APJD01000018_gene5758	7.078e-224	705.0	COG3552@1|root,COG3552@2|Bacteria,1MUEJ@1224|Proteobacteria,2TQQT@28211|Alphaproteobacteria,3JVY4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	VWA domain containing CoxE-like protein	-	-	-	ko:K07161	-	-	-	-	ko00000	-	-	-	VWA_CoxE
SX3_k127_5198073_7	1297865.APJD01000018_gene5757	2.584e-209	651.0	COG3618@1|root,COG3618@2|Bacteria,1MVG0@1224|Proteobacteria,2TRQX@28211|Alphaproteobacteria,3JRD4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
SX3_k127_5198073_9	1297865.APJD01000018_gene5756	5.849e-189	592.0	COG0491@1|root,COG0491@2|Bacteria,1Q8EW@1224|Proteobacteria,2TUW0@28211|Alphaproteobacteria,3JWAV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	MA20_13990	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_5198073_18	1297865.APJD01000018_gene5755	1.267e-18	85.0	COG1335@1|root,COG3386@1|root,COG1335@2|Bacteria,COG3386@2|Bacteria,1MU0C@1224|Proteobacteria,2TSXG@28211|Alphaproteobacteria,3JUN4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GQ	SMP-30/Gluconolaconase/LRE-like region	MA20_13995	-	3.1.1.17	ko:K01053,ko:K14274	ko00030,ko00040,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00040,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220	M00129	R01519,R02427,R02933,R03751	RC00537,RC00713,RC00983	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Isochorismatase,SGL
SX3_k127_5210840_7	1297865.APJD01000007_gene2048	1.471e-50	181.0	COG1309@1|root,COG1309@2|Bacteria,1QYD4@1224|Proteobacteria,2TVBJ@28211|Alphaproteobacteria,3JX56@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_5210840_1	1297865.APJD01000007_gene2047	4.357e-289	889.0	COG1233@1|root,COG1233@2|Bacteria,1R4AC@1224|Proteobacteria,2U3UP@28211|Alphaproteobacteria,3JTFY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Flavin containing amine oxidoreductase	-	-	-	-	-	-	-	-	-	-	-	-	Amino_oxidase
SX3_k127_5210840_4	1297865.APJD01000007_gene2046	9.991e-175	554.0	COG0410@1|root,COG0410@2|Bacteria,1R7N4@1224|Proteobacteria,2U23G@28211|Alphaproteobacteria,3JWQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
SX3_k127_5210840_6	1230476.C207_00454	7.007e-159	509.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TQK1@28211|Alphaproteobacteria,3JV6N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	-	-	-	ko:K01995,ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C,BPD_transp_2
SX3_k127_5210840_0	1297865.APJD01000007_gene2044	0.0	1310.0	COG1022@1|root,COG1022@2|Bacteria,1MU4D@1224|Proteobacteria,2TSSI@28211|Alphaproteobacteria,3JWVW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	AMP-binding enzyme	-	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding
SX3_k127_5210840_5	1297865.APJD01000007_gene2043	1.53e-172	542.0	COG0559@1|root,COG0559@2|Bacteria,1QVG2@1224|Proteobacteria,2U1AS@28211|Alphaproteobacteria,3JVPH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_2
SX3_k127_5210840_3	1297865.APJD01000007_gene2042	1.29e-207	666.0	COG4177@1|root,COG4177@2|Bacteria,1R6P2@1224|Proteobacteria,2U39B@28211|Alphaproteobacteria,3JUWC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_2
SX3_k127_5210840_2	1297865.APJD01000007_gene2041	5.697e-248	766.0	COG0683@1|root,COG0683@2|Bacteria,1MWR8@1224|Proteobacteria,2U2YF@28211|Alphaproteobacteria,3JU92@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_5210840_8	1297865.APJD01000007_gene2040	1.999e-34	142.0	COG2249@1|root,COG2249@2|Bacteria,1MUHN@1224|Proteobacteria,2U15Z@28211|Alphaproteobacteria,3JSDQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavodoxin-like fold	-	-	1.6.5.2	ko:K00355	ko00130,ko01110,ko05200,ko05225,ko05418,map00130,map01110,map05200,map05225,map05418	-	R02964,R03643,R03816	RC00819	ko00000,ko00001,ko01000	-	-	-	Flavodoxin_2
SX3_k127_522303_14	1297865.APJD01000014_gene605	7.093e-36	136.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2TTGJ@28211|Alphaproteobacteria,3JT9Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Cys/Met metabolism PLP-dependent enzyme	MA20_26420	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2
SX3_k127_522303_4	1297865.APJD01000014_gene604	1.575e-244	755.0	COG0687@1|root,COG0687@2|Bacteria,1MUYW@1224|Proteobacteria,2TSUZ@28211|Alphaproteobacteria,3JUJ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Required for the activity of the bacterial periplasmic transport system of putrescine	potF	-	-	ko:K11073	ko02010,map02010	M00300	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.2	-	-	SBP_bac_6,SBP_bac_8
SX3_k127_522303_5	1297865.APJD01000014_gene603	3.644e-207	644.0	COG1560@1|root,COG1560@2|Bacteria,1MVNI@1224|Proteobacteria,2TS2H@28211|Alphaproteobacteria,3JUSD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	lipid A biosynthesis	msbB	-	2.3.1.241	ko:K02517	ko00540,ko01100,map00540,map01100	M00060	R05146	RC00037,RC00039	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Lip_A_acyltrans
SX3_k127_522303_2	1230476.C207_06473	7.557e-266	820.0	COG0304@1|root,COG0304@2|Bacteria,1PVH9@1224|Proteobacteria,2TSMB@28211|Alphaproteobacteria,3JR29@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the beta-ketoacyl-ACP synthases family	fabF3	-	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
SX3_k127_522303_3	1297865.APJD01000014_gene601	5.589e-252	778.0	COG0304@1|root,COG0304@2|Bacteria,1MXZ7@1224|Proteobacteria,2TVEB@28211|Alphaproteobacteria,3JQQT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Beta-ketoacyl synthase, N-terminal domain	fabF2	-	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ketoacyl-synt
SX3_k127_522303_11	709797.CSIRO_2478	5.503e-63	219.0	COG0764@1|root,COG0764@2|Bacteria,1RJND@1224|Proteobacteria,2UA4J@28211|Alphaproteobacteria,3JYDB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	FabA-like domain	-	-	4.2.1.59	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121	RC00831,RC01095	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FabA
SX3_k127_522303_13	172088.AUGA01000003_gene5593	6.072e-58	203.0	COG0236@1|root,COG0236@2|Bacteria,1RI81@1224|Proteobacteria,2U9I5@28211|Alphaproteobacteria,3JZEG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Phosphopantetheine attachment site	acpXL	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	-	-	-	-	-	-	-	-	-	PP-binding
SX3_k127_522303_10	1297865.APJD01000014_gene598	1.689e-64	222.0	2A87P@1|root,30X8R@2|Bacteria,1RFTN@1224|Proteobacteria,2U7BA@28211|Alphaproteobacteria,3JYXG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_522303_6	1297865.APJD01000014_gene597	6.018e-185	579.0	COG0395@1|root,COG0395@2|Bacteria,1REG1@1224|Proteobacteria,2U2QS@28211|Alphaproteobacteria,3JV66@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Inward rectifier potassium channel	-	-	-	ko:K08715	-	-	-	-	ko00000,ko02000	1.A.2.2	-	-	IRK
SX3_k127_522303_8	1297865.APJD01000014_gene596	1.173e-140	447.0	COG4318@1|root,COG4318@2|Bacteria,1MVIY@1224|Proteobacteria,2TSB0@28211|Alphaproteobacteria,3JT1M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative ParB-like nuclease	-	-	-	-	-	-	-	-	-	-	-	-	ParBc_2
SX3_k127_522303_12	1304878.AUGD01000002_gene2172	1.488e-62	221.0	COG1285@1|root,COG1285@2|Bacteria,1MURJ@1224|Proteobacteria,2U5UM@28211|Alphaproteobacteria,3JY8F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MgtC family	-	-	-	ko:K07507	-	-	-	-	ko00000,ko02000	9.B.20	-	-	MgtC
SX3_k127_522303_9	1297865.APJD01000014_gene594	2.611e-118	381.0	COG2128@1|root,COG2128@2|Bacteria,1MUDM@1224|Proteobacteria,2TTY5@28211|Alphaproteobacteria,3JSMD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	MA20_26500	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_522303_1	1230476.C207_06464	0.0	1130.0	COG0433@1|root,COG0433@2|Bacteria,1MUSH@1224|Proteobacteria,2TUN9@28211|Alphaproteobacteria,3JTFJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function DUF87	MA20_26515	-	-	ko:K06915	-	-	-	-	ko00000	-	-	-	DUF853,DUF87
SX3_k127_522303_0	1297865.APJD01000014_gene592	0.0	1193.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JUXK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_7,PAS_8,dCache_1
SX3_k127_522303_15	1297865.APJD01000014_gene591	3.061e-28	114.0	2ADPG@1|root,313EI@2|Bacteria,1NGHE@1224|Proteobacteria,2UMRF@28211|Alphaproteobacteria,3K1S1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_522303_7	1297865.APJD01000014_gene590	1.556e-148	471.0	COG0346@1|root,COG0346@2|Bacteria,1MUWY@1224|Proteobacteria,2TTMJ@28211|Alphaproteobacteria,3JSUU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	xylE	-	1.13.11.2	ko:K00446	ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220	M00569	R00816,R04089,R05295,R05404,R05406,R07795	RC00387,RC00643,RC01075,RC01364,RC01914	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_5240823_4	1297865.APJD01000010_gene4900	9.828e-152	481.0	COG2304@1|root,COG2304@2|Bacteria,1RA4S@1224|Proteobacteria,2U5T8@28211|Alphaproteobacteria,3JQRD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	von Willebrand factor (vWF) type A domain	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5240823_6	1297865.APJD01000010_gene4901	2.887e-78	263.0	COG3439@1|root,COG3439@2|Bacteria,1MZ38@1224|Proteobacteria,2UBVK@28211|Alphaproteobacteria,3JYK0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function DUF302	ccrB	-	-	-	-	-	-	-	-	-	-	-	DUF302
SX3_k127_5240823_5	1297865.APJD01000010_gene4902	1.343e-145	463.0	COG2214@1|root,COG2214@2|Bacteria,1PUS9@1224|Proteobacteria,2TT35@28211|Alphaproteobacteria,3JS49@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	DnaJ molecular chaperone homology domain	MA20_36100	-	-	-	-	-	-	-	-	-	-	-	DnaJ
SX3_k127_5240823_2	1297865.APJD01000010_gene4903	0.0	1085.0	COG1686@1|root,COG1686@2|Bacteria,1MUU7@1224|Proteobacteria,2TRCV@28211|Alphaproteobacteria,3JT9T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the peptidase S11 family	dacA1	-	3.4.16.4	ko:K01286,ko:K07258	ko00550,ko01100,map00550,map01100	-	-	-	ko00000,ko00001,ko01000,ko01002,ko01011	-	-	-	Peptidase_S11,SPOR
SX3_k127_5240823_8	1230476.C207_04141	4.459e-65	223.0	COG5490@1|root,COG5490@2|Bacteria,1MZW0@1224|Proteobacteria,2UC4T@28211|Alphaproteobacteria,3JYPF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phasin protein	MA20_36110	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
SX3_k127_5240823_1	1297865.APJD01000010_gene4905	0.0	1222.0	COG4961@1|root,COG4961@2|Bacteria,1MWXU@1224|Proteobacteria,2TRQP@28211|Alphaproteobacteria,3JSKJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Putative Flp pilus-assembly TadE/G-like	-	-	-	-	-	-	-	-	-	-	-	-	Tad,VWA
SX3_k127_5240823_7	1297865.APJD01000010_gene4906	1.352e-70	245.0	COG2127@1|root,COG2127@2|Bacteria,1MZU8@1224|Proteobacteria,2U982@28211|Alphaproteobacteria,3JYQ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation	clpS	-	-	ko:K06891	-	-	-	-	ko00000	-	-	-	ClpS
SX3_k127_5240823_0	1230476.C207_04144	0.0	1587.0	COG0542@1|root,COG0542@2|Bacteria,1MV8B@1224|Proteobacteria,2TQUZ@28211|Alphaproteobacteria,3JQUP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the ClpA ClpB family	clpA	GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043335,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564	-	ko:K03694	-	-	-	-	ko00000,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
SX3_k127_5240823_3	1297865.APJD01000010_gene4908	2.255e-296	910.0	COG0477@1|root,COG0477@2|Bacteria,1MWUR@1224|Proteobacteria,2TT7N@28211|Alphaproteobacteria,3JQZB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	ko:K08169	-	-	-	-	ko00000,ko02000	2.A.1.3.17	-	-	MFS_1
SX3_k127_5240823_9	1297865.APJD01000010_gene4909	1.287e-55	194.0	2BHHJ@1|root,32BJW@2|Bacteria,1REMD@1224|Proteobacteria,2U7XZ@28211|Alphaproteobacteria,3JYPI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PilZ domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_5251050_3	1297865.APJD01000009_gene2698	1.504e-129	414.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JU8M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	mdtC	-	-	ko:K07789	ko02020,map02020	M00648	-	-	ko00000,ko00001,ko00002,ko02000	2.A.6.2	-	-	ACR_tran
SX3_k127_5251050_1	1297865.APJD01000009_gene2699	2.799e-168	534.0	COG1216@1|root,COG1216@2|Bacteria,1NM61@1224|Proteobacteria,2TRZB@28211|Alphaproteobacteria,3K08D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Glycosyltransferase like family 2	-	-	-	ko:K07011	-	-	-	-	ko00000	-	-	-	Glyco_tranf_2_3,Glyco_trans_2_3,Glycos_transf_2
SX3_k127_5251050_7	1297865.APJD01000009_gene2701	5.314e-81	274.0	2DH9H@1|root,2ZYVW@2|Bacteria,1PMPC@1224|Proteobacteria,2V099@28211|Alphaproteobacteria,3K0U6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	VanZ
SX3_k127_5251050_4	1297865.APJD01000009_gene2702	2.636e-125	404.0	COG1989@1|root,COG1989@2|Bacteria,1PNQR@1224|Proteobacteria,2UBNI@28211|Alphaproteobacteria,3JYIT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NOU	Type IV leader peptidase family	-	-	3.4.23.43	ko:K02654	-	M00331	-	-	ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	3.A.15.2	-	-	Peptidase_A24
SX3_k127_5251050_5	1297865.APJD01000009_gene2703	5.765e-113	368.0	2E9H8@1|root,333QC@2|Bacteria,1NDDU@1224|Proteobacteria,2UITT@28211|Alphaproteobacteria,3K1M4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5251050_6	1297865.APJD01000009_gene2704	4.851e-111	361.0	2DN8Z@1|root,32W63@2|Bacteria,1MZFH@1224|Proteobacteria,2UE3N@28211|Alphaproteobacteria,3K0P3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Type II secretion system (T2SS), protein M subtype b	-	-	-	ko:K02462	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSM_b
SX3_k127_5251050_0	1297865.APJD01000009_gene2705	3.553e-185	585.0	COG3166@1|root,COG3166@2|Bacteria,1PPB3@1224|Proteobacteria,2UD3Y@28211|Alphaproteobacteria,3JYVA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Fimbrial assembly protein (PilN)	-	-	-	ko:K02461	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	PilN
SX3_k127_5251050_2	1297865.APJD01000009_gene2706	6.569e-130	419.0	COG4968@1|root,COG4968@2|Bacteria	2|Bacteria	NU	Prokaryotic N-terminal methylation motif	-	-	-	ko:K02456,ko:K02457,ko:K02458,ko:K02459,ko:K02655,ko:K10926	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.15,3.A.15.2	-	-	ComP_DUS,N_methyl,T2SSJ
SX3_k127_5251050_9	1297865.APJD01000009_gene2707	3.938e-34	130.0	COG4967@1|root,COG4967@2|Bacteria,1NDAK@1224|Proteobacteria,2UGVP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	NU	type IV pilus modification protein PilV	-	-	-	-	-	-	-	-	-	-	-	-	N_methyl
SX3_k127_5254404_17	1297865.APJD01000010_gene5131	7.59e-46	166.0	COG0725@1|root,COG0725@2|Bacteria,1PTVK@1224|Proteobacteria,2TU4Y@28211|Alphaproteobacteria,3JQYR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial extracellular solute-binding protein	-	-	5.3.3.7	ko:K22003	ko00660,map00660	-	R02244	RC00668	ko00000,ko00001,ko01000	-	-	-	SBP_bac_11
SX3_k127_5254404_10	1297865.APJD01000010_gene5132	8.458e-151	480.0	COG0790@1|root,COG0790@2|Bacteria,1P3BA@1224|Proteobacteria,2TTYD@28211|Alphaproteobacteria,3JR2Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sel1-like repeats.	-	-	-	-	-	-	-	-	-	-	-	-	Sel1,TPR_6
SX3_k127_5254404_21	1297865.APJD01000010_gene5133	1.84e-18	98.0	2E328@1|root,32Y2G@2|Bacteria,1N9RI@1224|Proteobacteria,2UFJ4@28211|Alphaproteobacteria,3K0VA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5254404_13	1297865.APJD01000010_gene5134	2.409e-130	417.0	29NNR@1|root,309KP@2|Bacteria,1R91H@1224|Proteobacteria,2TUSZ@28211|Alphaproteobacteria,3JRRV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5254404_14	1297865.APJD01000010_gene5135	2.896e-113	368.0	COG2080@1|root,COG2080@2|Bacteria,1N9CA@1224|Proteobacteria,2U13W@28211|Alphaproteobacteria,3JUYD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	-	-	-	-	-	-	-	-	-	-	-	-	DHODB_Fe-S_bind,Fer2,Fer2_2
SX3_k127_5254404_0	1297865.APJD01000010_gene5136	0.0	1875.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2U1IN@28211|Alphaproteobacteria,3JWCS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Molybdopterin-binding domain of aldehyde dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Ald_Xan_dh_C2
SX3_k127_5254404_4	1297865.APJD01000010_gene5137	9.392e-249	771.0	2CFSM@1|root,2ZJVI@2|Bacteria,1PR43@1224|Proteobacteria,2TSI1@28211|Alphaproteobacteria,3JX8R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5254404_15	1297865.APJD01000010_gene5138	1.348e-85	287.0	COG3238@1|root,COG3238@2|Bacteria,1N6ZC@1224|Proteobacteria,2UFXH@28211|Alphaproteobacteria,3JZU8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative inner membrane exporter, YdcZ	-	-	-	ko:K09936	ko02024,map02024	-	-	-	ko00000,ko00001,ko02000	2.A.7.21	-	-	DMT_YdcZ
SX3_k127_5254404_1	1297865.APJD01000010_gene5139	0.0	1065.0	COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,2TQRZ@28211|Alphaproteobacteria,3JV37@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ABC transporter	MA20_28645	-	3.6.3.29,3.6.3.41	ko:K06022,ko:K06158,ko:K10834	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	ABC_tran,ABC_tran_Xtn
SX3_k127_5254404_12	1297865.APJD01000010_gene5140	3.198e-136	441.0	COG0110@1|root,COG0110@2|Bacteria,1MUCJ@1224|Proteobacteria,2U0PZ@28211|Alphaproteobacteria,3JUJG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial transferase hexapeptide (six repeats)	-	-	-	-	-	-	-	-	-	-	-	-	Hexapep
SX3_k127_5254404_8	1297865.APJD01000010_gene5141	5.551e-190	597.0	COG0412@1|root,COG0412@2|Bacteria,1R5J6@1224|Proteobacteria,2TVEA@28211|Alphaproteobacteria,3JTUW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	3.1.1.45	ko:K01061	ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130	-	R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222	RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686	ko00000,ko00001,ko01000	-	-	-	DLH
SX3_k127_5254404_7	1297865.APJD01000010_gene5142	8.727e-208	645.0	COG0491@1|root,COG0491@2|Bacteria,1QH44@1224|Proteobacteria,2TT1Q@28211|Alphaproteobacteria,3JT3P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	MA20_28665	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_5254404_5	1297865.APJD01000010_gene5143	2.4e-220	685.0	COG3437@1|root,COG3437@2|Bacteria,1QW6V@1224|Proteobacteria,2TWQE@28211|Alphaproteobacteria,3K6P4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	HD domain	-	-	-	-	-	-	-	-	-	-	-	-	HD,HD_5,Response_reg
SX3_k127_5254404_20	1297865.APJD01000010_gene5144	1.895e-33	129.0	2CG10@1|root,302BW@2|Bacteria,1NCIS@1224|Proteobacteria,2UFZ9@28211|Alphaproteobacteria,3K10W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5254404_16	1297865.APJD01000010_gene5145	1.477e-57	202.0	2CBFG@1|root,3242T@2|Bacteria,1RJV7@1224|Proteobacteria,2UB9A@28211|Alphaproteobacteria,3JZG4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PilZ domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_5254404_6	1297865.APJD01000010_gene5146	1.246e-210	658.0	COG5330@1|root,COG5330@2|Bacteria,1N44K@1224|Proteobacteria,2U0HY@28211|Alphaproteobacteria,3JVJ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
SX3_k127_5254404_9	1297865.APJD01000010_gene5147	4.492e-176	556.0	COG2207@1|root,COG2207@2|Bacteria,1P3X1@1224|Proteobacteria,2TRDS@28211|Alphaproteobacteria,3JRST@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K04033	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18
SX3_k127_5254404_18	1230476.C207_05323	1.825e-45	167.0	2DFGN@1|root,2ZRS9@2|Bacteria,1NB05@1224|Proteobacteria,2UI9V@28211|Alphaproteobacteria,3K1IJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_39905	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_5254404_19	1297865.APJD01000010_gene5149	5.602e-42	155.0	2E6BG@1|root,330Z9@2|Bacteria,1N126@1224|Proteobacteria,2UBZB@28211|Alphaproteobacteria,3K05H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_28695	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5254404_11	1297865.APJD01000010_gene5150	2.499e-146	464.0	COG0778@1|root,COG0778@2|Bacteria,1MWMJ@1224|Proteobacteria,2TU8B@28211|Alphaproteobacteria,3JWAG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase family	MA20_28705	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
SX3_k127_5254404_3	1297865.APJD01000010_gene5151	1.669e-249	772.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TQKE@28211|Alphaproteobacteria,3JVH0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_5254404_2	1297865.APJD01000001_gene6048	0.0	1060.0	COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JS9M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	MA20_28740	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal
SX3_k127_5265084_8	1297865.APJD01000026_gene2575	2.614e-46	166.0	COG0346@1|root,COG0346@2|Bacteria,1MXNZ@1224|Proteobacteria,2VG67@28211|Alphaproteobacteria,3JXZC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.14	ko:K10621	ko00362,ko00622,ko01120,ko01220,map00362,map00622,map01120,map01220	M00539	R01507,R05248	RC00387,RC01308	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_5265084_0	1297865.APJD01000026_gene2576	6.212e-249	769.0	28JIP@1|root,2Z82C@2|Bacteria,1R5N9@1224|Proteobacteria,2U3KH@28211|Alphaproteobacteria,3JWAR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	S1/P1 Nuclease	-	-	-	-	-	-	-	-	-	-	-	-	S1-P1_nuclease
SX3_k127_5265084_7	1297865.APJD01000026_gene2577	2.004e-48	174.0	29ES9@1|root,301Q2@2|Bacteria,1N9A3@1224|Proteobacteria,2UHM1@28211|Alphaproteobacteria,3K0W8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5265084_2	1297865.APJD01000026_gene2578	4.627e-169	537.0	COG1024@1|root,COG1024@2|Bacteria,1NJ9M@1224|Proteobacteria,2U07X@28211|Alphaproteobacteria,3JR0Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_29580	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_5265084_5	1297865.APJD01000026_gene2579	4.272e-139	442.0	2BZ0R@1|root,2Z7U0@2|Bacteria,1MX37@1224|Proteobacteria,2TSBD@28211|Alphaproteobacteria,3JT2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitrile hydratase, alpha chain	nthA	-	4.2.1.84	ko:K01721	ko00364,ko00380,ko00627,ko00643,ko01120,map00364,map00380,map00627,map00643,map01120	-	R02828,R04020,R05379,R05596,R07780,R07854	RC00483,RC00792,RC01345,RC01432	ko00000,ko00001,ko01000	-	-	-	NHase_alpha
SX3_k127_5265084_4	1297865.APJD01000026_gene2580	2.937e-147	466.0	28I45@1|root,2Z87Q@2|Bacteria,1R432@1224|Proteobacteria,2U3PK@28211|Alphaproteobacteria,3JS7H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	NHase catalyzes the hydration of various nitrile compounds to the corresponding amides	nthB	-	4.2.1.84	ko:K20807	ko00364,ko00380,ko00627,ko00643,ko01120,map00364,map00380,map00627,map00643,map01120	-	R04020,R05379,R05596,R07780,R07854	RC00483,RC01345,RC01432	ko00000,ko00001,ko01000	-	-	-	NHase_beta
SX3_k127_5265084_6	1297865.APJD01000026_gene2581	8.94e-79	266.0	2E3CR@1|root,32YC0@2|Bacteria,1N9Q9@1224|Proteobacteria,2UF5B@28211|Alphaproteobacteria,3JYQP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitrile hydratase beta subunit	MA20_29595	-	-	-	-	-	-	-	-	-	-	-	NHase_beta
SX3_k127_5265084_3	1297865.APJD01000026_gene2582	5.81e-165	520.0	COG0603@1|root,COG0603@2|Bacteria,1MU5V@1224|Proteobacteria,2TU7F@28211|Alphaproteobacteria,3JR5A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	queC	-	6.3.4.20	ko:K06920	ko00790,ko01100,map00790,map01100	-	R09978	RC00959	ko00000,ko00001,ko01000,ko03016	-	-	-	QueC
SX3_k127_5265084_1	1297865.APJD01000026_gene2583	3.346e-173	548.0	COG1694@1|root,COG3956@2|Bacteria,1MVKM@1224|Proteobacteria,2TRC9@28211|Alphaproteobacteria,3JUMU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MazG nucleotide pyrophosphohydrolase domain	mazG	GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009267,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0042594,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0050896,GO:0051716,GO:0055086,GO:0071496,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658	3.6.1.9	ko:K02499,ko:K04765	ko00230,ko00240,ko00760,ko00770,ko01100,map00230,map00240,map00760,map00770,map01100	-	R00086,R00087,R00103,R00287,R00426,R00515,R00662,R00720,R03004,R03036,R11323	RC00002	ko00000,ko00001,ko01000,ko03036	-	-	-	MazG
SX3_k127_5265084_9	1280950.HJO_02545	2.443e-32	134.0	COG3386@1|root,COG3386@2|Bacteria,1RHPS@1224|Proteobacteria,2UBD9@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	PFAM SMP-30 Gluconolaconase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5277070_9	1297865.APJD01000064_gene325	1.737e-76	256.0	COG0643@1|root,COG0745@1|root,COG0643@2|Bacteria,COG0745@2|Bacteria,1MUAG@1224|Proteobacteria,2TSN2@28211|Alphaproteobacteria,3JTYN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Function of homologous gene experimentally demonstrated in an other organism	cheA	-	2.7.13.3	ko:K03407	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035	-	-	-	CheW,H-kinase_dim,HATPase_c,Hpt,Response_reg
SX3_k127_5277070_7	398525.KB900701_gene1839	2.349e-88	295.0	COG0835@1|root,COG0835@2|Bacteria,1RAH1@1224|Proteobacteria,2U59Y@28211|Alphaproteobacteria,3JYAB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Two component signalling adaptor domain	cheW	-	-	ko:K03408	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	CheW
SX3_k127_5277070_8	1297865.APJD01000021_gene3080	9.735e-78	261.0	COG2199@1|root,COG3706@2|Bacteria,1RH2K@1224|Proteobacteria,2U9EP@28211|Alphaproteobacteria,3JYDM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	cheY	-	-	ko:K03413	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko02022,ko02035	-	-	-	Response_reg
SX3_k127_5277070_4	1297865.APJD01000021_gene3079	2.039e-184	580.0	COG1352@1|root,COG1352@2|Bacteria,1MU6W@1224|Proteobacteria,2TRQ3@28211|Alphaproteobacteria,3JTPM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP	cheR1	-	2.1.1.80	ko:K00575	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko01000,ko02035	-	-	-	CheR,CheR_N
SX3_k127_5277070_10	1297865.APJD01000021_gene3078	2.265e-61	211.0	2CBFG@1|root,30Y8R@2|Bacteria,1RI51@1224|Proteobacteria,2U7UD@28211|Alphaproteobacteria,3JZDX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_39155	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_5277070_12	1297865.APJD01000021_gene3077	1.303e-54	194.0	2AFIP@1|root,30VNR@2|Bacteria,1N1RX@1224|Proteobacteria,2VGFX@28211|Alphaproteobacteria,3K07C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5277070_6	1230476.C207_06999	1.079e-126	406.0	COG4566@1|root,COG4566@2|Bacteria,1PP24@1224|Proteobacteria,2TQN8@28211|Alphaproteobacteria,3JU3A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	MA20_39170	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_5277070_1	1230476.C207_06998	0.0	1180.0	COG0129@1|root,COG0129@2|Bacteria,1MV4I@1224|Proteobacteria,2TQRW@28211|Alphaproteobacteria,3JR3Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	Dehydratase family	MA20_39205	-	4.2.1.82,4.2.1.9	ko:K01687,ko:K22186	ko00040,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00040,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R02429,R04441,R05070	RC00468,RC00543,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
SX3_k127_5277070_14	224911.27354970	4.682e-05	47.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_5277070_5	1297865.APJD01000021_gene3074	1.091e-152	482.0	COG0684@1|root,COG0684@2|Bacteria,1MUWV@1224|Proteobacteria,2TU1X@28211|Alphaproteobacteria,3JTSK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Aldolase/RraA	MA20_39210	-	-	-	-	-	-	-	-	-	-	-	RraA-like
SX3_k127_5277070_13	224911.27348475	2.317e-06	53.0	COG0500@1|root,COG0500@2|Bacteria,1REJ2@1224|Proteobacteria,2U7T5@28211|Alphaproteobacteria,3JV3K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Nodulation protein S (NodS)	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
SX3_k127_5277070_0	1297865.APJD01000021_gene3073	0.0	1468.0	COG1770@1|root,COG1770@2|Bacteria,1MUED@1224|Proteobacteria,2TTR0@28211|Alphaproteobacteria,3JRTX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Prolyl oligopeptidase, N-terminal beta-propeller domain	ptrB	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0070012,GO:0071704,GO:0140096,GO:1901564	3.4.21.83	ko:K01354	ko05142,ko05143,map05142,map05143	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S9,Peptidase_S9_N
SX3_k127_5277070_2	1297865.APJD01000021_gene3072	0.0	1085.0	COG1178@1|root,COG1178@2|Bacteria,1MWEV@1224|Proteobacteria,2TVQS@28211|Alphaproteobacteria,3JV51@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02011	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.10	-	-	BPD_transp_1
SX3_k127_5277070_3	1297865.APJD01000021_gene3071	7.707e-228	706.0	COG1840@1|root,COG1840@2|Bacteria,1MXZ8@1224|Proteobacteria,2V7DS@28211|Alphaproteobacteria,3JXI6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial extracellular solute-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_11,SBP_bac_6
SX3_k127_5277070_11	1297865.APJD01000021_gene3070	8.751e-59	204.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,3JVXD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	TOBE domain	-	-	3.6.3.30	ko:K02010	ko02010,map02010	M00190	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.10	-	-	ABC_tran,TOBE_2
SX3_k127_5282505_4	1297865.APJD01000023_gene1119	6.246e-77	258.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,3JSG0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Belongs to the ABC transporter superfamily	MA20_20680	-	-	ko:K02031	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_5282505_1	1297865.APJD01000023_gene1120	6.275e-205	646.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,3JRYC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the ABC transporter superfamily	MA20_20675	-	-	ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	ABC_tran,oligo_HPY
SX3_k127_5282505_6	504832.OCAR_4725	2.264e-22	102.0	2DQRS@1|root,338B6@2|Bacteria,1N7ZC@1224|Proteobacteria,2UJ14@28211|Alphaproteobacteria,3K4SX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3325)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3325
SX3_k127_5282505_0	1297865.APJD01000023_gene1121	0.0	1053.0	COG3182@1|root,COG3182@2|Bacteria,1MVET@1224|Proteobacteria,2TVHW@28211|Alphaproteobacteria,3JWB1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
SX3_k127_5282505_5	1297865.APJD01000023_gene1122	5.58e-45	165.0	2DP9T@1|root,3315U@2|Bacteria,1NBA0@1224|Proteobacteria,2UD2I@28211|Alphaproteobacteria,3K0SU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3649)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3649
SX3_k127_5282505_3	1297865.APJD01000023_gene1123	1.451e-154	488.0	COG5266@1|root,COG5266@2|Bacteria,1MXVN@1224|Proteobacteria,2VGF8@28211|Alphaproteobacteria,3JS7J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	PFAM Nickel transport complex, NikM subunit, transmembrane	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5282505_2	1297865.APJD01000023_gene1124	1.21e-195	610.0	COG4774@1|root,COG4774@2|Bacteria,1MVZD@1224|Proteobacteria,2TS4K@28211|Alphaproteobacteria,3JR1J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	siderophore receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,STN,TonB_dep_Rec
SX3_k127_5288425_33	1297865.APJD01000005_gene3552	6.11e-117	376.0	COG3327@1|root,COG3327@2|Bacteria,1R4IF@1224|Proteobacteria,2TS3A@28211|Alphaproteobacteria,3JU2C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	phenylacetic acid degradation operon negative regulatory protein PaaX	paaX	-	-	ko:K02616	-	-	-	-	ko00000,ko03000	-	-	-	PaaX,PaaX_C
SX3_k127_5288425_24	1297865.APJD01000005_gene3551	1.358e-169	532.0	COG1075@1|root,COG1075@2|Bacteria,1NJNA@1224|Proteobacteria,2TSQC@28211|Alphaproteobacteria,3JV19@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha beta hydrolase	MA20_16655	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6,DUF676,Hydrolase_4
SX3_k127_5288425_8	1297865.APJD01000005_gene3550	3.884e-268	827.0	COG2733@1|root,COG2733@2|Bacteria,1MX3G@1224|Proteobacteria,2U15J@28211|Alphaproteobacteria,3JSYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF445)	MA20_16660	-	-	-	-	-	-	-	-	-	-	-	DUF445
SX3_k127_5288425_35	1297865.APJD01000005_gene3549	1.949e-86	287.0	COG5490@1|root,COG5490@2|Bacteria,1MUUM@1224|Proteobacteria,2U1GB@28211|Alphaproteobacteria,3JQTT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phasin protein	MA20_16665	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
SX3_k127_5288425_32	1297865.APJD01000005_gene3548	1.732e-122	396.0	COG1247@1|root,COG1247@2|Bacteria,1R6UW@1224|Proteobacteria,2U09H@28211|Alphaproteobacteria,3JQVX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	MA20_16670	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_5288425_9	1297865.APJD01000005_gene3547	2.28e-243	752.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2VFW2@28211|Alphaproteobacteria,3JTF9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus	MA20_16675	-	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1,PhaC_N
SX3_k127_5288425_36	1297865.APJD01000005_gene3546	5.699e-77	259.0	2DSEU@1|root,33FV9@2|Bacteria,1RG4E@1224|Proteobacteria,2U66H@28211|Alphaproteobacteria,3JYBR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	polyhydroxyalkanoic acid synthase, PhaR subunit	-	-	-	-	-	-	-	-	-	-	-	-	PHA_synth_III_E
SX3_k127_5288425_18	1297865.APJD01000005_gene3545	1.633e-197	616.0	COG2267@1|root,COG2267@2|Bacteria,1R41P@1224|Proteobacteria,2TRY2@28211|Alphaproteobacteria,3JSW4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	MA20_16685	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_4
SX3_k127_5288425_34	1230476.C207_02423	1.622e-91	302.0	COG4922@1|root,COG4922@2|Bacteria,1RDM5@1224|Proteobacteria,2UG54@28211|Alphaproteobacteria,3JY4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL,SnoaL_2
SX3_k127_5288425_13	1297865.APJD01000005_gene3543	2.076e-214	683.0	COG4177@1|root,COG4177@2|Bacteria,1NY9G@1224|Proteobacteria,2TTSN@28211|Alphaproteobacteria,3JT7P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_5288425_26	1297865.APJD01000005_gene3542	1.15e-166	527.0	COG0559@1|root,COG0559@2|Bacteria,1P3FU@1224|Proteobacteria,2U0D7@28211|Alphaproteobacteria,3JXW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_5288425_30	1297865.APJD01000005_gene3541	1.093e-142	457.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TSMP@28211|Alphaproteobacteria,3JT67@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_5288425_29	1297865.APJD01000005_gene3540	2.466e-146	464.0	COG0411@1|root,COG0411@2|Bacteria,1MUFT@1224|Proteobacteria,2U22X@28211|Alphaproteobacteria,3JS0B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_5288425_7	1297865.APJD01000005_gene3539	4.056e-289	907.0	COG0683@1|root,COG0683@2|Bacteria,1N0MT@1224|Proteobacteria,2TUMI@28211|Alphaproteobacteria,3JS0N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6,TAT_signal
SX3_k127_5288425_3	1297865.APJD01000005_gene3538	0.0	1220.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2TRHJ@28211|Alphaproteobacteria,3JW9N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	tfdB	-	1.14.13.20	ko:K10676	ko00361,ko01100,ko01120,ko01220,map00361,map01100,map01120,map01220	-	R03997,R05441	RC00046	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3
SX3_k127_5288425_17	1297865.APJD01000005_gene3537	1.391e-198	619.0	COG3485@1|root,COG3485@2|Bacteria,1MX7W@1224|Proteobacteria,2TT8T@28211|Alphaproteobacteria,3JW00@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Catechol dioxygenase N terminus	-	-	1.13.11.37	ko:K04098	ko00361,ko00362,ko01100,ko01120,map00361,map00362,map01100,map01120	-	R03891,R04061	RC00388,RC01016	ko00000,ko00001,ko01000	-	-	-	Dioxygenase_C,Dioxygenase_N
SX3_k127_5288425_10	1297865.APJD01000005_gene3536	7.149e-237	737.0	COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2TSK0@28211|Alphaproteobacteria,3JUM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Iron-containing alcohol dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Fe-ADH
SX3_k127_5288425_39	1304878.AUGD01000018_gene1293	0.0001315	44.0	29ZK8@1|root,30MKM@2|Bacteria,1RF9T@1224|Proteobacteria,2U8EN@28211|Alphaproteobacteria,3JYSZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5288425_22	1297865.APJD01000005_gene3535	2.584e-191	598.0	COG4977@1|root,COG4977@2|Bacteria,1MXZQ@1224|Proteobacteria,2U38S@28211|Alphaproteobacteria,3JXRK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K07506	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18
SX3_k127_5288425_31	1297865.APJD01000005_gene3534	2.519e-140	449.0	COG4262@1|root,COG4262@2|Bacteria,1P1G3@1224|Proteobacteria,2TQSR@28211|Alphaproteobacteria,3JSYK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Spermidine synthase	MA20_16695	-	2.5.1.16	ko:K00797	ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100	M00034,M00133	R01920,R02869,R08359	RC00021,RC00053	ko00000,ko00001,ko00002,ko01000	-	-	-	Spermine_synth
SX3_k127_5288425_0	1297865.APJD01000005_gene3533	0.0	2218.0	COG0369@1|root,COG2124@1|root,COG0369@2|Bacteria,COG2124@2|Bacteria,1MV75@1224|Proteobacteria,2TSV7@28211|Alphaproteobacteria,3JUN7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	PQ	Flavodoxin	MA20_16700	-	1.14.14.1,1.6.2.4	ko:K14338	ko00071,ko00380,ko00627,ko01120,map00071,map00380,map00627,map01120	-	R03629,R04121,R05259	RC00046,RC01311	ko00000,ko00001,ko00199,ko01000	-	-	-	FAD_binding_1,Flavodoxin_1,NAD_binding_1,p450
SX3_k127_5288425_11	1297865.APJD01000005_gene3532	1.279e-230	713.0	COG0596@1|root,COG0596@2|Bacteria,1N5ZI@1224|Proteobacteria,2TS7X@28211|Alphaproteobacteria,3JTQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	-	-	2.7.10.2,3.3.2.9	ko:K01253,ko:K08253	ko00980,ko04976,ko05204,map00980,map04976,map05204	-	R07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443	RC01447,RC01728,RC01764,RC02528	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1
SX3_k127_5288425_5	1297865.APJD01000005_gene3531	0.0	1014.0	COG1020@1|root,COG1020@2|Bacteria,1N7HY@1224|Proteobacteria,2TRZV@28211|Alphaproteobacteria,3JSC2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Protein of unknown function (DUF1298)	MA20_16710	-	-	-	-	-	-	-	-	-	-	-	DUF1298,WES_acyltransf
SX3_k127_5288425_25	1297865.APJD01000005_gene3530	9.479e-169	534.0	COG1075@1|root,COG1075@2|Bacteria,1NJNA@1224|Proteobacteria,2TSQC@28211|Alphaproteobacteria,3JSU2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha beta hydrolase	MA20_16715	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6,Lipase_2
SX3_k127_5288425_37	398525.KB900701_gene3563	2.668e-48	174.0	COG3266@1|root,COG3266@2|Bacteria,1NC0S@1224|Proteobacteria,2UG0A@28211|Alphaproteobacteria,3JZDG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	domain, Protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5288425_4	1297865.APJD01000005_gene3528	0.0	1092.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TQQH@28211|Alphaproteobacteria,3JVSR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_5288425_19	1297865.APJD01000005_gene3527	9.544e-195	609.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TR3F@28211|Alphaproteobacteria,3JR08@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_5288425_20	1297865.APJD01000005_gene3526	5.093e-193	618.0	COG1173@1|root,COG1173@2|Bacteria,1MUG0@1224|Proteobacteria,2TT4V@28211|Alphaproteobacteria,3JRP6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_5288425_16	1297865.APJD01000005_gene3525	4.731e-204	655.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,3JRIW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Oligopeptide/dipeptide transporter, C-terminal region	MA20_16740	-	-	ko:K02031	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_5288425_14	1297865.APJD01000005_gene3524	9.343e-211	666.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,3JT4D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the ABC transporter superfamily	MA20_16745	-	-	ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_5288425_2	1297865.APJD01000005_gene3523	0.0	1256.0	COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2TSME@28211|Alphaproteobacteria,3JQSX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Gamma-glutamyltranspeptidase	MA20_16750	-	2.3.2.2,3.4.19.13	ko:K00681	ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100	-	R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935	RC00064,RC00090,RC00096	ko00000,ko00001,ko01000,ko01002	-	-	-	G_glu_transpept
SX3_k127_5288425_38	1037409.BJ6T_06680	4.089e-05	48.0	COG0864@1|root,COG0864@2|Bacteria,1RK4R@1224|Proteobacteria,2U9KJ@28211|Alphaproteobacteria,3JWZM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	nikR	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	ko:K07722	-	-	-	-	ko00000,ko03000	-	-	-	NikR_C,RHH_1
SX3_k127_5288425_28	1297865.APJD01000005_gene3522	6.528e-149	473.0	COG3342@1|root,COG3342@2|Bacteria,1MWQT@1224|Proteobacteria,2TRJZ@28211|Alphaproteobacteria,3JU3P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Family of unknown function (DUF1028)	MA20_16755	-	-	-	-	-	-	-	-	-	-	-	DUF1028
SX3_k127_5288425_15	1297865.APJD01000005_gene3521	1.062e-207	656.0	COG0444@1|root,COG0444@2|Bacteria,1R4KB@1224|Proteobacteria,2TR0J@28211|Alphaproteobacteria,3JSG0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Belongs to the ABC transporter superfamily	MA20_16760	-	-	ko:K02031	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_5288425_12	1297865.APJD01000005_gene3520	4.663e-224	717.0	COG4608@1|root,COG4608@2|Bacteria,1NU4K@1224|Proteobacteria,2TQTV@28211|Alphaproteobacteria,3JRYC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the ABC transporter superfamily	-	-	-	ko:K02032,ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	M00239,M00439	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.1,3.A.1.5.18,3.A.1.5.19,3.A.1.5.25	-	-	ABC_tran,oligo_HPY
SX3_k127_5288425_6	1297865.APJD01000005_gene3519	0.0	1005.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TR1D@28211|Alphaproteobacteria,3JS99@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_5288425_21	1297865.APJD01000005_gene3518	4.87e-192	600.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TR0N@28211|Alphaproteobacteria,3JUIB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_16775	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_5288425_23	1297865.APJD01000005_gene3517	1.894e-175	556.0	COG1173@1|root,COG1173@2|Bacteria,1MUG0@1224|Proteobacteria,2VETJ@28211|Alphaproteobacteria,3JRE7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	MA20_16780	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_5288425_27	1297865.APJD01000005_gene3516	2.724e-163	516.0	COG0251@1|root,COG0251@2|Bacteria,1N1B6@1224|Proteobacteria,2TZWE@28211|Alphaproteobacteria,3JRZG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	oxidation-reduction process	MA20_16785	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5288425_1	1297865.APJD01000005_gene3515	0.0	1645.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JRYN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	MA20_16805	-	-	ko:K18138,ko:K18307	ko01501,ko01503,ko02024,map01501,map01503,map02024	M00644,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000	2.A.6.2,2.A.6.2.20,2.A.6.2.32	-	-	ACR_tran
SX3_k127_5293957_5	1297865.APJD01000009_gene2742	1.035e-31	128.0	COG0564@1|root,COG0564@2|Bacteria,1MUBN@1224|Proteobacteria,2TSBK@28211|Alphaproteobacteria,3JRC8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Responsible for synthesis of pseudouridine from uracil	rluD	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.23	ko:K06180	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PseudoU_synth_2,S4
SX3_k127_5293957_3	1297865.APJD01000009_gene2741	7.196e-59	205.0	2ECXJ@1|root,336US@2|Bacteria,1RE34@1224|Proteobacteria,2U7UX@28211|Alphaproteobacteria,3JYR1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_04830	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5293957_2	1297865.APJD01000009_gene2740	1.165e-136	437.0	COG0723@1|root,COG0723@2|Bacteria,1R42I@1224|Proteobacteria,2U0F3@28211|Alphaproteobacteria,3JTUR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Rieske [2Fe-2S] domain	MA20_34340	-	-	-	-	-	-	-	-	-	-	-	Rieske
SX3_k127_5293957_0	1297865.APJD01000009_gene2739	0.0	1246.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3JSFY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	MA20_34345	-	1.1.2.8	ko:K00114	ko00010,ko00625,ko01100,ko01110,ko01120,ko01130,map00010,map00625,map01100,map01110,map01120,map01130	-	R05062,R05198,R05285	RC00087,RC00088,RC01039	ko00000,ko00001,ko01000	-	-	-	PQQ,PQQ_2
SX3_k127_5293957_4	1230476.C207_03614	6.592e-34	132.0	2ACAI@1|root,311VB@2|Bacteria,1N2EB@1224|Proteobacteria,2UCDV@28211|Alphaproteobacteria,3K06H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5293957_1	1297865.APJD01000009_gene2737	2.971e-264	813.0	COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,2TQVK@28211|Alphaproteobacteria,3JSM1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	MA20_34355	-	1.3.99.16	ko:K07303	-	-	-	-	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_5300183_6	1297865.APJD01000019_gene3144	5.831e-122	391.0	COG2802@1|root,COG2802@2|Bacteria,1NV9N@1224|Proteobacteria,2TQZ4@28211|Alphaproteobacteria,3JRXV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ATP-dependent protease La (LON) substrate-binding domain	lonD	-	3.4.21.53	ko:K01338,ko:K07157	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	LON_substr_bdg
SX3_k127_5300183_8	1297865.APJD01000019_gene3143	4.983e-112	363.0	COG3658@1|root,COG3658@2|Bacteria,1RIG7@1224|Proteobacteria,2U3PI@28211|Alphaproteobacteria,3JU24@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Prokaryotic cytochrome b561	-	-	-	-	-	-	-	-	-	-	-	-	Ni_hydr_CYTB
SX3_k127_5300183_15	1230476.C207_02191	8.447e-46	169.0	COG5591@1|root,COG5591@2|Bacteria,1N507@1224|Proteobacteria,2UBZG@28211|Alphaproteobacteria,3K0HR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase propeptide and YPEB domain	MA20_24995	-	-	-	-	-	-	-	-	-	-	-	PepSY_2
SX3_k127_5300183_0	1297865.APJD01000019_gene3141	0.0	1618.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JT1X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Bacterial signalling protein N terminal repeat	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_7,PAS_8,dCache_1
SX3_k127_5300183_10	1297865.APJD01000019_gene3140	1.327e-89	295.0	COG2050@1|root,COG2050@2|Bacteria,1RC67@1224|Proteobacteria,2U6YR@28211|Alphaproteobacteria,3JYBI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_5300183_14	1297865.APJD01000019_gene3139	2.154e-64	224.0	2A7R7@1|root,30WQ1@2|Bacteria,1REIW@1224|Proteobacteria,2UA6J@28211|Alphaproteobacteria,3JYQG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5300183_7	1297865.APJD01000019_gene3138	3.815e-114	369.0	COG1309@1|root,COG1309@2|Bacteria,1R59A@1224|Proteobacteria,2U08S@28211|Alphaproteobacteria,3JYCX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_5300183_16	398525.KB900701_gene1611	4.732e-35	134.0	COG2835@1|root,COG2835@2|Bacteria,1N6Y2@1224|Proteobacteria,2UF4N@28211|Alphaproteobacteria,3K13U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0434 family	MA20_24965	-	-	ko:K09791	-	-	-	-	ko00000	-	-	-	Trm112p
SX3_k127_5300183_4	1297865.APJD01000019_gene3136	2.49e-194	606.0	COG1073@1|root,COG1073@2|Bacteria,1R67P@1224|Proteobacteria,2U3D5@28211|Alphaproteobacteria,3JVTA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	-	-	-	ko:K06889	-	-	-	-	ko00000	-	-	-	Hydrolase_4
SX3_k127_5300183_2	1297865.APJD01000019_gene3135	6.622e-260	801.0	COG0654@1|root,COG0654@2|Bacteria,1MU6I@1224|Proteobacteria,2TRZU@28211|Alphaproteobacteria,3JU6C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family	ubiH	GO:0003674,GO:0003824,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016491,GO:0019168,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901576,GO:1901661,GO:1901663	-	ko:K03185	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04989,R08773	RC02670	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_5300183_17	224911.27354970	2.408e-06	53.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_5300183_5	1297865.APJD01000019_gene3134	2.764e-190	595.0	COG1946@1|root,COG1946@2|Bacteria,1MV9R@1224|Proteobacteria,2TRFD@28211|Alphaproteobacteria,3JSMX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA thioesterase	tesB	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016042,GO:0016054,GO:0016289,GO:0016787,GO:0016788,GO:0016790,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042802,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0047617,GO:0051186,GO:0055086,GO:0071704,GO:0072329,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901575	-	ko:K10805	ko01040,map01040	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	4HBT_3
SX3_k127_5300183_3	1297865.APJD01000019_gene3133	6.978e-198	619.0	2EGCD@1|root,33A46@2|Bacteria,1NW0E@1224|Proteobacteria,2TVBM@28211|Alphaproteobacteria,3JS23@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4339)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4339
SX3_k127_5300183_12	1297865.APJD01000019_gene3132	5.007e-66	225.0	COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,2U952@28211|Alphaproteobacteria,3JYRV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the P(II) protein family	glnK	-	-	ko:K04751,ko:K04752	ko02020,map02020	-	-	-	ko00000,ko00001	-	-	-	P-II
SX3_k127_5300183_1	1297865.APJD01000019_gene3131	1.93e-271	839.0	COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,2TT2J@28211|Alphaproteobacteria,3JQXC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ammonium Transporter	MA20_24940	-	-	ko:K03320	-	-	-	-	ko00000,ko02000	1.A.11	-	-	Ammonium_transp
SX3_k127_5300183_13	319003.Bra1253DRAFT_05038	1.086e-64	226.0	COG0640@1|root,COG0640@2|Bacteria,1RHCK@1224|Proteobacteria,2U9S5@28211|Alphaproteobacteria,3JYSU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
SX3_k127_5300183_11	1297865.APJD01000019_gene3129	6.882e-71	243.0	COG3832@1|root,COG3832@2|Bacteria,1N064@1224|Proteobacteria,2UEHZ@28211|Alphaproteobacteria,3JYX5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	glyoxalase III activity	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_5300183_9	1297865.APJD01000019_gene3128	1.208e-110	359.0	COG0740@1|root,COG0740@2|Bacteria,1MV46@1224|Proteobacteria,2U07E@28211|Alphaproteobacteria,3JTVY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OU	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins	clpP1	-	3.4.21.92	ko:K01358	ko04112,ko04212,map04112,map04212	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	CLP_protease
SX3_k127_5300201_5	1297865.APJD01000020_gene310	5.283e-16	77.0	COG0765@1|root,COG0765@2|Bacteria,1MV3I@1224|Proteobacteria,2TR9C@28211|Alphaproteobacteria,3JRDN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	amino acid ABC	-	-	-	ko:K09971	ko02010,map02010	M00232	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	BPD_transp_1
SX3_k127_5300201_4	1297865.APJD01000020_gene311	1.665e-158	502.0	COG1126@1|root,COG1126@2|Bacteria,1MU9Q@1224|Proteobacteria,2TQX2@28211|Alphaproteobacteria,3JUA8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	glnQ	-	3.6.3.21	ko:K02028,ko:K09972	ko02010,map02010	M00232,M00236	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.17,3.A.1.3.18,3.A.1.3.7,3.A.1.3.8	-	-	ABC_tran
SX3_k127_5300201_2	1297865.APJD01000020_gene312	1.741e-226	706.0	COG0031@1|root,COG0031@2|Bacteria,1MUBE@1224|Proteobacteria,2TR4W@28211|Alphaproteobacteria,3JRM9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	cysB	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.5.1.47	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021	R00897,R03601,R04859	RC00020,RC02814,RC02821	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_5300201_0	1297865.APJD01000020_gene313	2.423e-270	833.0	COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,2TR8K@28211|Alphaproteobacteria,3JRR9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	cyclopropane-fatty-acyl-phospholipid synthase	cfaS	-	2.1.1.79	ko:K00574	-	-	-	-	ko00000,ko01000	-	-	-	CMAS
SX3_k127_5300201_3	1297865.APJD01000020_gene314	1.816e-176	553.0	COG3496@1|root,COG3496@2|Bacteria,1RC56@1224|Proteobacteria,2TUX0@28211|Alphaproteobacteria,3JX7V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1365)	-	-	-	ko:K09701	-	-	-	-	ko00000	-	-	-	DUF1365
SX3_k127_5300201_1	1297865.APJD01000020_gene315	1.222e-267	823.0	COG2907@1|root,COG2907@2|Bacteria,1MV4Z@1224|Proteobacteria,2TQUH@28211|Alphaproteobacteria,3JU95@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin containing amine oxidoreductase	-	-	-	ko:K06954	-	-	-	-	ko00000	-	-	-	Amino_oxidase
SX3_k127_5311321_3	1297865.APJD01000005_gene3755	6.955e-64	219.0	28R17@1|root,2ZDFU@2|Bacteria,1RAFZ@1224|Proteobacteria,2U641@28211|Alphaproteobacteria,3JYD8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5311321_1	1297865.APJD01000005_gene3756	2.136e-230	716.0	COG0451@1|root,COG0451@2|Bacteria,1MU7J@1224|Proteobacteria,2TSIP@28211|Alphaproteobacteria,3JRQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Polysaccharide biosynthesis protein	-	-	5.1.3.6	ko:K08679	ko00520,ko01100,map00520,map01100	-	R01385	RC00289	ko00000,ko00001,ko01000	-	-	-	Epimerase
SX3_k127_5311321_6	1297865.APJD01000005_gene3757	9.464e-37	147.0	29ENM@1|root,301KI@2|Bacteria,1N8Q2@1224|Proteobacteria,2UIXH@28211|Alphaproteobacteria,3K14F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5311321_7	1297865.APJD01000005_gene3758	1.252e-34	134.0	2BHJB@1|root,32BMS@2|Bacteria,1NFZT@1224|Proteobacteria,2UIB2@28211|Alphaproteobacteria,3K124@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5311321_8	1297865.APJD01000005_gene3759	1.951e-30	122.0	2AFW6@1|root,315Z1@2|Bacteria,1NFTW@1224|Proteobacteria,2UGWV@28211|Alphaproteobacteria,3K1DP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5311321_5	1230476.C207_01793	1.055e-46	170.0	COG2963@1|root,COG2963@2|Bacteria,1N9EW@1224|Proteobacteria	1224|Proteobacteria	L	Homeodomain-like domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_23
SX3_k127_5311321_4	1297865.APJD01000005_gene3761	8.458e-57	198.0	2A95H@1|root,30Y9Z@2|Bacteria,1RI7G@1224|Proteobacteria,2UA5J@28211|Alphaproteobacteria,3JZR4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5311321_0	1297865.APJD01000005_gene3762	1.362e-277	857.0	COG2148@1|root,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,2TRZA@28211|Alphaproteobacteria,3JSHU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	2.7.8.6	ko:K00996,ko:K03606	ko05111,map05111	-	-	-	ko00000,ko00001,ko01000,ko01005	-	-	-	Bac_transf,CoA_binding_3
SX3_k127_5311321_2	1297865.APJD01000005_gene3763	2.817e-90	297.0	2A514@1|root,30TPD@2|Bacteria,1MXDF@1224|Proteobacteria,2U4C5@28211|Alphaproteobacteria,3JVW4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_53148_0	1297865.APJD01000014_gene569	0.0	1699.0	COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2TTQD@28211|Alphaproteobacteria,3JUT0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K16090	-	-	-	-	ko00000,ko02000	1.B.14.1.11	-	-	Plug,TonB_dep_Rec
SX3_k127_53148_4	1230476.C207_06826	1.352e-130	449.0	COG3128@1|root,COG3128@2|Bacteria,1MUI7@1224|Proteobacteria,2TRH2@28211|Alphaproteobacteria,3JUZG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PKHD-type hydroxylase	MA20_27135	GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0033554,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0098771	1.14.11.2	ko:K00472,ko:K07336	ko00330,ko01100,map00330,map01100	-	R01252	RC00478	ko00000,ko00001,ko01000	-	-	-	2OG-FeII_Oxy_3
SX3_k127_53148_2	1297865.APJD01000014_gene567	2.264e-186	586.0	COG0811@1|root,COG0811@2|Bacteria,1MXHR@1224|Proteobacteria,2TQNN@28211|Alphaproteobacteria,3JR8P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Outer membrane transport energization protein ExbB	exbB	-	-	ko:K03561	-	-	-	-	ko00000,ko02000	1.A.30.2.1	-	-	MotA_ExbB
SX3_k127_53148_5	1297865.APJD01000014_gene566	4.132e-90	297.0	COG0848@1|root,COG0848@2|Bacteria,1RDJZ@1224|Proteobacteria,2U77T@28211|Alphaproteobacteria,3JZ71@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Outer membrane transport energization protein ExbD	exbD	-	-	ko:K03559,ko:K03560	-	-	-	-	ko00000,ko02000	1.A.30.2.1,1.A.30.2.2	-	-	ExbD
SX3_k127_53148_3	1297865.APJD01000014_gene565	5.84e-154	488.0	COG0810@1|root,COG0810@2|Bacteria,1MZXC@1224|Proteobacteria,2U2BG@28211|Alphaproteobacteria,3JTCR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K03832	-	-	-	-	ko00000,ko02000	2.C.1.1	-	-	TonB_2,TonB_C
SX3_k127_53148_6	1230476.C207_07139	0.0003912	43.0	COG2220@1|root,COG2220@2|Bacteria,1MVP2@1224|Proteobacteria,2U2W2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Beta-lactamase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B_2,Lactamase_B_3
SX3_k127_53148_1	1297865.APJD01000014_gene564	3.419e-206	643.0	COG0697@1|root,COG0697@2|Bacteria,1R6CU@1224|Proteobacteria,2UBDU@28211|Alphaproteobacteria,3K30J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_5319108_8	1297865.APJD01000005_gene3754	4.604e-57	199.0	29F79@1|root,30254@2|Bacteria,1NB7N@1224|Proteobacteria,2UIPB@28211|Alphaproteobacteria,3K0V7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5319108_10	1297865.APJD01000005_gene3753	4.427e-32	125.0	2AH4N@1|root,317EA@2|Bacteria,1P9PN@1224|Proteobacteria,2UXMT@28211|Alphaproteobacteria,3K5AN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5319108_11	172088.AUGA01000060_gene4305	4.962e-28	113.0	2AHJ4@1|root,317WS@2|Bacteria,1NM2N@1224|Proteobacteria,2UJN2@28211|Alphaproteobacteria,3K2A0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5319108_13	1297865.APJD01000005_gene3752	5.569e-22	99.0	2AF6B@1|root,31559@2|Bacteria,1NCNB@1224|Proteobacteria,2UFFV@28211|Alphaproteobacteria,3K13P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5319108_5	1297865.APJD01000005_gene3751	9.414e-201	628.0	COG1273@1|root,COG1273@2|Bacteria,1N4UX@1224|Proteobacteria,2TRTI@28211|Alphaproteobacteria,3JRH6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD	ku	-	-	ko:K10979	ko03450,map03450	-	-	-	ko00000,ko00001,ko03400	-	-	-	Ku
SX3_k127_5319108_9	1297865.APJD01000005_gene3750	3.345e-45	164.0	2AGYB@1|root,31771@2|Bacteria,1N19I@1224|Proteobacteria,2UBTV@28211|Alphaproteobacteria,3K06I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5319108_12	172088.AUGA01000060_gene4308	7.405e-23	99.0	COG3847@1|root,COG3847@2|Bacteria,1NCET@1224|Proteobacteria,2UH1G@28211|Alphaproteobacteria,3K1I8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Flp/Fap pilin component	-	-	-	ko:K02651	ko04112,map04112	-	-	-	ko00000,ko00001,ko02035,ko02044	-	-	-	Flp_Fap
SX3_k127_5319108_0	1297865.APJD01000005_gene3748	0.0	1111.0	COG0028@1|root,COG0028@2|Bacteria,1MWC3@1224|Proteobacteria,2TTA2@28211|Alphaproteobacteria,3JS9T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, central domain	MA20_15555	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_5319108_2	1297865.APJD01000005_gene3747	1.027e-267	825.0	COG0683@1|root,COG0683@2|Bacteria,1MXPJ@1224|Proteobacteria,2TSZ5@28211|Alphaproteobacteria,3JVDI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_5319108_1	1297865.APJD01000005_gene3746	5.156e-318	974.0	COG1129@1|root,COG1129@2|Bacteria,1QU8N@1224|Proteobacteria,2TWPU@28211|Alphaproteobacteria,3K6KR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	ATPases associated with a variety of cellular activities	-	-	-	ko:K01995,ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_5319108_6	1297865.APJD01000005_gene3745	5.836e-184	577.0	COG4177@1|root,COG4177@2|Bacteria,1MUXQ@1224|Proteobacteria,2TUA1@28211|Alphaproteobacteria,3JUQE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_5319108_7	1297865.APJD01000005_gene3744	2.608e-172	544.0	COG0559@1|root,COG0559@2|Bacteria,1R23K@1224|Proteobacteria,2TTCX@28211|Alphaproteobacteria,3JUNY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_5319108_3	1297865.APJD01000005_gene3743	1.512e-259	801.0	COG0683@1|root,COG0683@2|Bacteria,1MXPJ@1224|Proteobacteria,2TSZ5@28211|Alphaproteobacteria,3JVDI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_5319108_14	224911.27354970	1.964e-09	59.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_5319108_15	224911.27355455	7.052e-05	55.0	COG0840@1|root,COG2770@1|root,COG0840@2|Bacteria,COG2770@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSAR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Double sensory domain of two-component sensor kinase	MA20_04120	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal,dCache_3
SX3_k127_5319108_4	1297865.APJD01000005_gene3742	2.26e-254	786.0	COG0477@1|root,COG2814@2|Bacteria,1MX2Q@1224|Proteobacteria,2TRNS@28211|Alphaproteobacteria,3JS7R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Fungal trichothecene efflux pump (TRI12)	MA20_15570	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_53479_4	1230476.C207_04335	1.786e-197	635.0	COG1309@1|root,COG1309@2|Bacteria,1P5JE@1224|Proteobacteria,2U2E1@28211|Alphaproteobacteria,3JVDJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_53479_2	1297865.APJD01000036_gene1545	2.28e-227	705.0	COG1893@1|root,COG1893@2|Bacteria,1QMH8@1224|Proteobacteria,2TSGW@28211|Alphaproteobacteria,3JWCH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid	MA20_00225	-	-	-	-	-	-	-	-	-	-	-	ApbA
SX3_k127_53479_14	1038867.AXAY01000026_gene1381	0.0001485	45.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,3JUU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337,ko:K14162	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_53479_12	1297865.APJD01000036_gene1546	1.833e-75	261.0	COG0782@1|root,COG0782@2|Bacteria,1MZNY@1224|Proteobacteria,2UC6B@28211|Alphaproteobacteria,3JZKG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Rnk N-terminus	greA2	-	-	ko:K06140	-	-	-	-	ko00000,ko03000	-	-	-	GreA_GreB,Rnk_N
SX3_k127_53479_9	1297865.APJD01000036_gene1547	4.985e-102	344.0	COG2059@1|root,COG2059@2|Bacteria,1RB6A@1224|Proteobacteria,2VG8C@28211|Alphaproteobacteria,3JW3N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Chromate transporter	-	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
SX3_k127_53479_7	1297865.APJD01000036_gene1548	1.141e-111	362.0	COG2059@1|root,COG2059@2|Bacteria,1RFMD@1224|Proteobacteria,2VG8D@28211|Alphaproteobacteria,3JX2N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Chromate transporter	-	-	-	ko:K07240	-	-	-	-	ko00000,ko02000	2.A.51.1	-	-	Chromate_transp
SX3_k127_53479_5	1297865.APJD01000036_gene1549	8.737e-184	589.0	COG0583@1|root,COG0583@2|Bacteria,1MXRP@1224|Proteobacteria,2TV2C@28211|Alphaproteobacteria,3K62S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_53479_8	1297865.APJD01000036_gene1550	2.144e-111	362.0	COG2128@1|root,COG2128@2|Bacteria,1R84B@1224|Proteobacteria,2U42G@28211|Alphaproteobacteria,3JX2Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	-	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_53479_10	1144319.PMI16_04645	1.319e-90	301.0	COG0110@1|root,COG0110@2|Bacteria,1RA2T@1224|Proteobacteria,2VR8A@28216|Betaproteobacteria,477IG@75682|Oxalobacteraceae	28216|Betaproteobacteria	S	Hexapeptide repeat of succinyl-transferase	-	-	2.3.1.79	ko:K00661	-	-	-	-	ko00000,ko01000	-	-	-	Hexapep,Hexapep_2
SX3_k127_53479_3	1230476.C207_04324	1.065e-201	633.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,2TS7I@28211|Alphaproteobacteria,3JR98@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DJ-1/PfpI family	-	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI,HTH_18
SX3_k127_53479_6	1297865.APJD01000036_gene1552	5.021e-150	475.0	COG0693@1|root,COG0693@2|Bacteria,1N8N6@1224|Proteobacteria,2TT0U@28211|Alphaproteobacteria,3JTZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DJ-1/PfpI family	-	-	4.2.1.103	ko:K18199	ko00930,map00930	-	R05771	RC01467	ko00000,ko00001,ko01000,ko01002	-	-	-	DJ-1_PfpI
SX3_k127_53479_11	1297865.APJD01000036_gene1553	3.789e-85	283.0	2B3D3@1|root,31W1V@2|Bacteria,1MYTY@1224|Proteobacteria,2U6J7@28211|Alphaproteobacteria,3JYFY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_53479_1	1297865.APJD01000036_gene1554	2.346e-240	746.0	COG2159@1|root,COG2159@2|Bacteria,1MVTS@1224|Proteobacteria,2TU78@28211|Alphaproteobacteria,3JV4R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	ko:K07045	-	-	-	-	ko00000	-	-	-	Amidohydro_2
SX3_k127_53479_0	1297865.APJD01000036_gene1555	6.413e-261	803.0	COG2159@1|root,COG2159@2|Bacteria,1N0C7@1224|Proteobacteria,2TRXY@28211|Alphaproteobacteria,3JQNV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Amidohydrolase	-	-	-	ko:K07045	-	-	-	-	ko00000	-	-	-	Amidohydro_2
SX3_k127_5350056_2	1230476.C207_02579	3.854e-242	750.0	28NTG@1|root,2ZBS3@2|Bacteria,1N1KZ@1224|Proteobacteria,2TQM9@28211|Alphaproteobacteria,3JSKR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_20990	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5350056_5	1297865.APJD01000003_gene6450	3.208e-129	413.0	COG1051@1|root,COG1051@2|Bacteria,1MU6H@1224|Proteobacteria,2TU48@28211|Alphaproteobacteria,3JU1J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	NUDIX domain	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_5350056_7	1297865.APJD01000003_gene6449	3.132e-86	286.0	COG2050@1|root,COG2050@2|Bacteria,1NA0B@1224|Proteobacteria,2UI6H@28211|Alphaproteobacteria,3JW5D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	MA20_21000	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_5350056_3	1297865.APJD01000003_gene6448	5.83e-220	698.0	COG0667@1|root,COG0667@2|Bacteria,1MV2Y@1224|Proteobacteria,2TR3G@28211|Alphaproteobacteria,3JQX6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldo/keto reductase family	MA20_21005	-	1.1.1.91	ko:K05882	-	-	-	-	ko00000,ko01000	-	-	-	Aldo_ket_red
SX3_k127_5350056_8	1297865.APJD01000003_gene6447	3.495e-36	138.0	2ANMU@1|root,31DM5@2|Bacteria,1NF8X@1224|Proteobacteria,2UIA8@28211|Alphaproteobacteria,3K100@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5350056_0	1230476.C207_02574	0.0	1465.0	COG0376@1|root,COG0376@2|Bacteria,1MUBF@1224|Proteobacteria,2TQJ7@28211|Alphaproteobacteria,3JRQT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity	katG	GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0020037,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748	1.11.1.21	ko:K03782	ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110	-	R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906	RC00034,RC00213,RC00767,RC02141	ko00000,ko00001,ko01000	-	-	-	peroxidase
SX3_k127_5350056_4	1297865.APJD01000003_gene6445	3.86e-196	612.0	COG0583@1|root,COG0583@2|Bacteria,1MVA1@1224|Proteobacteria,2TSUS@28211|Alphaproteobacteria,3JV0U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR family	oxyR	-	-	ko:K04761	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_5350056_1	1297865.APJD01000003_gene6444	0.0	1298.0	COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,2TST2@28211|Alphaproteobacteria,3JR8Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the DEAD box helicase family	deaD	-	3.6.4.13	ko:K05592	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03009,ko03019	-	-	-	DEAD,DbpA,Helicase_C
SX3_k127_5350056_6	1297865.APJD01000003_gene6443	2.694e-120	386.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TSC5@28211|Alphaproteobacteria,3K382@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ATPases associated with a variety of cellular activities	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
SX3_k127_5377465_4	1297865.APJD01000035_gene5484	9.461e-193	603.0	COG0249@1|root,COG0249@2|Bacteria,1MUGX@1224|Proteobacteria,2TQRR@28211|Alphaproteobacteria,3JT7Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	mutS	GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391	-	ko:K03555	ko03430,map03430	-	-	-	ko00000,ko00001,ko03400	-	-	-	MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V
SX3_k127_5377465_2	1297865.APJD01000035_gene5485	7.431e-255	788.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,3JSVS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	pcaF	-	2.3.1.174	ko:K07823	ko00362,ko01120,map00362,map01120	-	R00829	RC00004,RC00326	ko00000,ko00001,ko01000	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_5377465_6	1297865.APJD01000035_gene5486	1.314e-168	529.0	COG3485@1|root,COG3485@2|Bacteria,1MUYX@1224|Proteobacteria,2TU2C@28211|Alphaproteobacteria,3JT90@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Protocatechuate 3,4-dioxygenase beta subunit N terminal	pcaH	-	1.13.11.3	ko:K00449	ko00362,ko00624,ko01100,ko01120,ko01220,map00362,map00624,map01100,map01120,map01220	-	R01631,R03549	RC00388,RC00953	br01602,ko00000,ko00001,ko01000	-	-	-	Dioxygenase_C,PCDO_beta_N
SX3_k127_5377465_7	1297865.APJD01000035_gene5487	4.319e-132	421.0	COG3485@1|root,COG3485@2|Bacteria,1MV3B@1224|Proteobacteria,2TTZJ@28211|Alphaproteobacteria,3JSK1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Dioxygenase	pcaG	-	1.13.11.3	ko:K00448	ko00362,ko00624,ko01100,ko01120,ko01220,map00362,map00624,map01100,map01120,map01220	-	R01631,R03549	RC00388,RC00953	br01602,ko00000,ko00001,ko01000	-	-	-	Dioxygenase_C
SX3_k127_5377465_5	1297865.APJD01000035_gene5488	1.273e-173	545.0	COG0169@1|root,COG0169@2|Bacteria,1Q95E@1224|Proteobacteria,2U01M@28211|Alphaproteobacteria,3JSTT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)	-	-	1.1.1.25	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02413	RC00206	ko00000,ko00001,ko00002,ko01000	-	-	-	Shikimate_dh_N,ThiF
SX3_k127_5377465_1	1297865.APJD01000035_gene5489	1.42e-260	803.0	COG0673@1|root,COG0673@2|Bacteria,1NVJK@1224|Proteobacteria,2U0NE@28211|Alphaproteobacteria,3JTW8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase family, NAD-binding Rossmann fold	MA20_02630	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA
SX3_k127_5377465_0	1297865.APJD01000035_gene5490	2.907e-284	878.0	COG0683@1|root,COG0683@2|Bacteria,1Q1P3@1224|Proteobacteria,2TUJG@28211|Alphaproteobacteria,3JUDI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_02635	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6,TAT_signal
SX3_k127_5377465_8	224911.27354970	3.826e-06	59.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_5377465_3	1297865.APJD01000035_gene5491	3.917e-228	707.0	COG0477@1|root,COG0477@2|Bacteria,1RGPN@1224|Proteobacteria,2TQKW@28211|Alphaproteobacteria,3JS9D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	MFS/sugar transport protein	MA20_23265	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
SX3_k127_5381014_0	1297865.APJD01000039_gene1731	0.0	1256.0	COG0465@1|root,COG0465@2|Bacteria,1MU6J@1224|Proteobacteria,2TSYQ@28211|Alphaproteobacteria,3JRNK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins	ftsH	-	-	ko:K03798	-	M00742	-	-	ko00000,ko00002,ko01000,ko01002,ko03110	-	-	-	AAA,FtsH_ext,Peptidase_M41
SX3_k127_5381014_9	1230476.C207_04494	2.425e-71	242.0	2DMMQ@1|root,32SHK@2|Bacteria,1N2WS@1224|Proteobacteria,2UC62@28211|Alphaproteobacteria,3JYW0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3052)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3052
SX3_k127_5381014_4	1297865.APJD01000039_gene1733	2.737e-263	813.0	COG0683@1|root,COG0683@2|Bacteria,1N45V@1224|Proteobacteria,2U18M@28211|Alphaproteobacteria,3JVGS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_5381014_2	1297865.APJD01000039_gene1734	0.0	1000.0	COG1287@1|root,COG1287@2|Bacteria,1N1IK@1224|Proteobacteria,2TUYH@28211|Alphaproteobacteria,3JSAB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	oligosaccharyl transferase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5381014_6	1297865.APJD01000039_gene1735	3.984e-124	401.0	COG1309@1|root,COG1309@2|Bacteria,1RJK5@1224|Proteobacteria,2TSES@28211|Alphaproteobacteria,3JUVU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_03880	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_5381014_8	1297865.APJD01000039_gene1736	1.38e-85	284.0	COG1764@1|root,COG1764@2|Bacteria,1RH9U@1224|Proteobacteria,2U768@28211|Alphaproteobacteria,3JYCF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	OsmC-like protein	osmC	GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0033194,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748	-	ko:K04063	-	-	-	-	ko00000	-	-	-	OsmC
SX3_k127_5381014_3	1297865.APJD01000039_gene1737	5.905e-301	928.0	COG0469@1|root,COG0469@2|Bacteria,1MU21@1224|Proteobacteria,2TRFV@28211|Alphaproteobacteria,3JU12@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the pyruvate kinase family	pyk	-	2.7.1.40	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	M00001,M00002,M00049,M00050	R00200,R00430,R01138,R01858,R02320	RC00002,RC00015	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	PK,PK_C
SX3_k127_5381014_7	172088.AUGA01000032_gene1452	1.324e-116	376.0	COG5480@1|root,COG5480@2|Bacteria,1RISQ@1224|Proteobacteria,2U9NW@28211|Alphaproteobacteria,3JTM3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1036)	MA20_03870	-	-	-	-	-	-	-	-	-	-	-	DUF1036
SX3_k127_5381014_10	172088.AUGA01000032_gene1453	3.425e-61	211.0	COG3492@1|root,COG3492@2|Bacteria,1MZ3I@1224|Proteobacteria,2UC11@28211|Alphaproteobacteria,3JZFI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1244)	MA20_03865	-	-	ko:K09948	-	-	-	-	ko00000	-	-	-	DUF1244
SX3_k127_5381014_11	1297865.APJD01000039_gene1740	2.178e-46	169.0	COG3750@1|root,COG3750@2|Bacteria,1N77J@1224|Proteobacteria,2UFX6@28211|Alphaproteobacteria,3JZE3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0335 family	MA20_03860	-	-	-	-	-	-	-	-	-	-	-	DUF2312
SX3_k127_5381014_1	1297865.APJD01000039_gene1741	0.0	1043.0	COG3108@1|root,COG3108@2|Bacteria,1MWW2@1224|Proteobacteria,2TQZ1@28211|Alphaproteobacteria,3JUBS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF882)	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M15_2
SX3_k127_5381014_5	1297865.APJD01000039_gene1742	4.143e-142	451.0	COG2989@1|root,COG2989@2|Bacteria,1MV14@1224|Proteobacteria,2TRJ9@28211|Alphaproteobacteria,3JR7I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative peptidoglycan binding domain	-	-	-	ko:K21470	-	-	-	-	ko00000,ko01002,ko01011	-	-	-	PG_binding_1,YkuD
SX3_k127_5401181_3	1297865.APJD01000014_gene530	1.599e-124	398.0	COG4689@1|root,COG4689@2|Bacteria,1N4IP@1224|Proteobacteria,2TTZX@28211|Alphaproteobacteria,3JRAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Catalyzes the conversion of acetoacetate to acetone and carbon dioxide	adc	-	4.1.1.4	ko:K01574	ko00072,ko00640,ko01100,map00072,map00640,map01100	M00088	R01366	RC00040	ko00000,ko00001,ko00002,ko01000	-	-	-	ADC
SX3_k127_5401181_0	1297865.APJD01000014_gene529	5.257e-275	848.0	COG2271@1|root,COG2271@2|Bacteria,1QTW2@1224|Proteobacteria,2TVZE@28211|Alphaproteobacteria,3JVFE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	MA20_27390	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_5401181_2	1297865.APJD01000014_gene528	9.763e-252	778.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,3JR13@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	atoB	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_5401181_1	1297865.APJD01000014_gene527	2.063e-270	835.0	COG0441@1|root,COG0441@2|Bacteria,1PRED@1224|Proteobacteria,2TUGY@28211|Alphaproteobacteria,3JT99@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Anticodon binding domain	-	-	6.1.1.3	ko:K01868	ko00970,map00970	M00359,M00360	R03663	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_2b
SX3_k127_5405808_29	376733.IT41_07590	0.0002688	44.0	COG3843@1|root,COG3843@2|Bacteria,1MU0S@1224|Proteobacteria,2TSP8@28211|Alphaproteobacteria,2PVPY@265|Paracoccus	28211|Alphaproteobacteria	U	Type IV secretory pathway, VirD2 components (Relaxase)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3363
SX3_k127_5405808_1	1297865.APJD01000005_gene3865	0.0	1222.0	COG0129@1|root,COG0129@2|Bacteria,1MUTQ@1224|Proteobacteria,2TRTQ@28211|Alphaproteobacteria,3JQV8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the IlvD Edd family	ilvD	-	4.2.1.9	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R04441,R05070	RC00468,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
SX3_k127_5405808_25	1230476.C207_01873	3.901e-37	140.0	2CHK4@1|root,2ZDQM@2|Bacteria,1N1BQ@1224|Proteobacteria,2UCMX@28211|Alphaproteobacteria,3K13S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5405808_28	1297865.APJD01000005_gene3863	9.947e-11	63.0	2AGER@1|root,316KV@2|Bacteria,1NHYX@1224|Proteobacteria,2UNCJ@28211|Alphaproteobacteria,3K1WJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5405808_8	1297865.APJD01000005_gene3862	1e-228	708.0	COG1052@1|root,COG1052@2|Bacteria,1MVSS@1224|Proteobacteria,2TR35@28211|Alphaproteobacteria,3JQNA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family	MA20_14995	-	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_5405808_11	398525.KB900701_gene3896	2.414e-192	600.0	COG3618@1|root,COG3618@2|Bacteria,1N2QM@1224|Proteobacteria,2TTZK@28211|Alphaproteobacteria,3JSFK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
SX3_k127_5405808_9	1297865.APJD01000005_gene3859	6.877e-205	638.0	COG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria,3JW1B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_5405808_18	1297865.APJD01000005_gene3858	2.975e-112	364.0	COG4032@1|root,COG4032@2|Bacteria,1R53S@1224|Proteobacteria,2TT20@28211|Alphaproteobacteria,3JTZJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	MA20_15000	-	4.1.1.79	ko:K06034	ko00680,ko01120,map00680,map01120	M00358	R05774	RC00506	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_N
SX3_k127_5405808_17	1297865.APJD01000005_gene3857	2.329e-124	402.0	COG0028@1|root,COG0028@2|Bacteria,1R6QP@1224|Proteobacteria,2TUEF@28211|Alphaproteobacteria,3JT5U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	MA20_15005	-	4.1.1.79	ko:K13039	ko00680,ko01120,map00680,map01120	M00358	R05774	RC00506	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C
SX3_k127_5405808_7	1297865.APJD01000005_gene3856	3.142e-232	720.0	COG1893@1|root,COG1893@2|Bacteria,1MVZ1@1224|Proteobacteria,2TRJN@28211|Alphaproteobacteria,3JWE8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Ketopantoate reductase PanE/ApbA C terminal	-	-	1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000	-	-	-	ApbA,ApbA_C
SX3_k127_5405808_23	1297865.APJD01000005_gene3855	2.087e-67	233.0	COG3103@1|root,COG4991@2|Bacteria,1RDIS@1224|Proteobacteria,2U7QS@28211|Alphaproteobacteria,3JYXF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Protein of unknown function (DUF1236)	MA20_15015	-	-	-	-	-	-	-	-	-	-	-	DUF1236
SX3_k127_5405808_13	1297865.APJD01000005_gene3854	4.284e-165	521.0	COG1432@1|root,COG1432@2|Bacteria,1MX5C@1224|Proteobacteria,2TRE6@28211|Alphaproteobacteria,3JT11@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	OST-HTH/LOTUS domain	MA20_15040	-	-	-	-	-	-	-	-	-	-	-	NYN,OST-HTH
SX3_k127_5405808_22	1297865.APJD01000005_gene3853	1.879e-73	250.0	29ZDC@1|root,30MC8@2|Bacteria,1RESS@1224|Proteobacteria,2U7RD@28211|Alphaproteobacteria,3JZ8I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5405808_3	1297865.APJD01000005_gene3852	2.303e-302	929.0	COG2271@1|root,COG2271@2|Bacteria,1P24P@1224|Proteobacteria,2TWZS@28211|Alphaproteobacteria,3K6QJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Uncharacterised MFS-type transporter YbfB	-	-	-	ko:K08369	-	-	-	-	ko00000,ko02000	2.A.1	-	-	MFS_1,MFS_4,Sugar_tr
SX3_k127_5405808_15	1297865.APJD01000005_gene3851	2.424e-144	460.0	COG1802@1|root,COG1802@2|Bacteria,1RKMP@1224|Proteobacteria,2UAUH@28211|Alphaproteobacteria,3JTM6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_5405808_6	1297865.APJD01000005_gene3850	7.297e-242	748.0	COG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,2TU1G@28211|Alphaproteobacteria,3JU3K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	alcohol dehydrogenase	-	-	1.1.1.1,1.1.1.284	ko:K00121	ko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_5405808_24	1297865.APJD01000005_gene3849	1.896e-66	231.0	2E8MD@1|root,332YV@2|Bacteria,1MYV4@1224|Proteobacteria,2UBE6@28211|Alphaproteobacteria,3JZY9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5405808_26	1297865.APJD01000005_gene3848	1.782e-36	138.0	2FKPB@1|root,31QNX@2|Bacteria,1N2D9@1224|Proteobacteria,2UEZM@28211|Alphaproteobacteria,3K0PW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5405808_12	1230476.C207_01855	1.781e-173	544.0	COG3000@1|root,COG3000@2|Bacteria,1R4RM@1224|Proteobacteria,2TRCM@28211|Alphaproteobacteria,3JW9S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Fatty acid hydroxylase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	FA_hydroxylase
SX3_k127_5405808_0	1297865.APJD01000005_gene3845	0.0	1394.0	COG0045@1|root,COG1042@1|root,COG0045@2|Bacteria,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2TQYI@28211|Alphaproteobacteria,3JU7U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA binding domain	MA20_15065	-	-	-	-	-	-	-	-	-	-	-	ATP-grasp_5,CoA_binding_2,Succ_CoA_lig
SX3_k127_5405808_14	1230476.C207_01853	3.815e-147	467.0	COG1802@1|root,COG1802@2|Bacteria,1MXNF@1224|Proteobacteria,2U1PK@28211|Alphaproteobacteria,3JUTC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	MA20_15070	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_5405808_2	1297865.APJD01000005_gene3843	0.0	1161.0	COG0028@1|root,COG0028@2|Bacteria,1MXDW@1224|Proteobacteria,2TT9X@28211|Alphaproteobacteria,3JRKI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Belongs to the TPP enzyme family	oxc	-	2.2.1.6,4.1.1.8	ko:K01577,ko:K01652	ko00290,ko00630,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00630,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R01908,R03050,R04672,R04673,R08648	RC00027,RC00106,RC00620,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_5405808_4	1297865.APJD01000005_gene3842	1.69e-287	883.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TTM5@28211|Alphaproteobacteria,3JR50@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate	frc	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_5405808_10	1297865.APJD01000005_gene3841	1.75e-204	637.0	COG0625@1|root,COG0625@2|Bacteria,1P71B@1224|Proteobacteria,2U1A5@28211|Alphaproteobacteria,3JXHU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	GST_C_2,GST_N_3
SX3_k127_5405808_16	1297865.APJD01000005_gene3840	5.293e-132	422.0	COG1309@1|root,COG1309@2|Bacteria,1RE2I@1224|Proteobacteria,2U8EP@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_5405808_5	1297865.APJD01000005_gene3839	2.641e-265	818.0	COG0683@1|root,COG0683@2|Bacteria,1NT92@1224|Proteobacteria,2UR3J@28211|Alphaproteobacteria,3K3I7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_5405808_27	1297865.APJD01000005_gene3838	1.837e-34	132.0	COG1024@1|root,COG1024@2|Bacteria,1NDT7@1224|Proteobacteria,2U4XC@28211|Alphaproteobacteria,3K2Z5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_5405808_19	1297865.APJD01000005_gene3838	8.677e-112	361.0	COG1024@1|root,COG1024@2|Bacteria,1NDT7@1224|Proteobacteria,2U4XC@28211|Alphaproteobacteria,3K2Z5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_5405808_21	1297865.APJD01000005_gene3837	7.605e-84	286.0	COG0604@1|root,COG0604@2|Bacteria,1MWRK@1224|Proteobacteria,2TQMF@28211|Alphaproteobacteria,3JYJ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	-	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_5408048_1	1297865.APJD01000019_gene3204	0.0	1090.0	COG3540@1|root,COG3540@2|Bacteria,1MWAF@1224|Proteobacteria,2TS7J@28211|Alphaproteobacteria,3JV4Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	PhoD-like phosphatase	MA20_25290	-	3.1.3.1	ko:K01113	ko00790,ko01100,ko02020,map00790,map01100,map02020	M00126	R04620	RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PhoD,PhoD_N
SX3_k127_5408048_9	1297865.APJD01000019_gene3203	1.244e-73	250.0	COG0784@1|root,COG0784@2|Bacteria,1RHY5@1224|Proteobacteria,2U818@28211|Alphaproteobacteria,3K5X8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_5408048_4	1297865.APJD01000019_gene3202	7.133e-159	501.0	COG0664@1|root,COG0664@2|Bacteria,1NEQM@1224|Proteobacteria,2TQXG@28211|Alphaproteobacteria,3JQVG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Crp-like helix-turn-helix domain	MA20_25280	-	-	-	-	-	-	-	-	-	-	-	HTH_Crp_2
SX3_k127_5408048_10	224911.27348412	0.0002327	51.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5408048_0	1297865.APJD01000019_gene3201	0.0	1199.0	COG1217@1|root,COG1217@2|Bacteria,1MV5Q@1224|Proteobacteria,2TR63@28211|Alphaproteobacteria,3JTCG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	GTP-binding protein TypA	typA	GO:0000027,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006996,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071826,GO:0071840	-	ko:K06207	-	-	-	-	ko00000	-	-	-	EFG_C,GTP_EFTU,GTP_EFTU_D2
SX3_k127_5408048_2	1297865.APJD01000019_gene3200	2.983e-277	852.0	COG1231@1|root,COG1231@2|Bacteria,1MUPQ@1224|Proteobacteria,2TRVT@28211|Alphaproteobacteria,3JSB0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Flavin containing amine oxidoreductase	-	-	1.4.3.4	ko:K00274	ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034	M00135	R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354	RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713	ko00000,ko00001,ko00002,ko01000	-	-	-	Amino_oxidase
SX3_k127_5408048_7	1297865.APJD01000019_gene3199	4.518e-98	325.0	COG3011@1|root,COG3011@2|Bacteria,1N0YV@1224|Proteobacteria,2U5MD@28211|Alphaproteobacteria,3JY5Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Protein of unknown function, DUF393	-	-	-	-	-	-	-	-	-	-	-	-	DUF393
SX3_k127_5408048_3	1297865.APJD01000019_gene3198	1.685e-273	852.0	COG0702@1|root,COG0702@2|Bacteria,1MZ0C@1224|Proteobacteria,2TSBI@28211|Alphaproteobacteria,3JQMF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	DoxX-like family	-	-	-	-	-	-	-	-	-	-	-	-	DoxX_3,Epimerase,NAD_binding_10
SX3_k127_5408048_8	1297865.APJD01000019_gene3197	9.672e-91	302.0	COG5528@1|root,COG5528@2|Bacteria,1RDUE@1224|Proteobacteria,2U7HT@28211|Alphaproteobacteria,3JYA7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted integral membrane protein (DUF2269)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2269
SX3_k127_5408048_6	1230476.C207_04100	1.19e-107	349.0	COG1247@1|root,COG1247@2|Bacteria,1QU6B@1224|Proteobacteria,2TW1F@28211|Alphaproteobacteria,3JSZM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	FR47-like protein	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,FR47
SX3_k127_5408048_5	1297865.APJD01000019_gene3195	2.832e-111	362.0	COG0221@1|root,COG0221@2|Bacteria,1RA2F@1224|Proteobacteria,2TQZM@28211|Alphaproteobacteria,3JR9D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions	ppa	-	3.6.1.1	ko:K01507	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	Pyrophosphatase
SX3_k127_5411566_8	1297865.APJD01000011_gene6532	1.173e-196	613.0	COG0834@1|root,COG0834@2|Bacteria,1MXEJ@1224|Proteobacteria,2TRQT@28211|Alphaproteobacteria,3JQYA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	cjaA	-	-	ko:K02030,ko:K10001	ko02010,ko02020,map02010,map02020	M00230,M00236	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.19,3.A.1.3.4	-	-	SBP_bac_3
SX3_k127_5411566_3	1297865.APJD01000011_gene6531	7.791e-258	797.0	COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,2TUFB@28211|Alphaproteobacteria,3JTXI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Sodium:dicarboxylate symporter family	gltP	-	-	-	-	-	-	-	-	-	-	-	SDF
SX3_k127_5411566_7	1297865.APJD01000011_gene6530	1.082e-218	680.0	COG2130@1|root,COG2130@2|Bacteria,1MUC2@1224|Proteobacteria,2TQYM@28211|Alphaproteobacteria,3JSWX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	N-terminal domain of oxidoreductase	MA20_40260	-	-	ko:K07119	-	-	-	-	ko00000	-	-	-	ADH_N_2,ADH_zinc_N
SX3_k127_5411566_0	1297865.APJD01000011_gene6529	0.0	2019.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JRGX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	AcrB/AcrD/AcrF family	MA20_01135	-	-	ko:K03296	-	-	-	-	ko00000	2.A.6.2	-	-	ACR_tran
SX3_k127_5411566_6	1230476.C207_05902	7.622e-232	720.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,2TU0W@28211|Alphaproteobacteria,3JRDK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K03585	ko01501,ko01503,map01501,map01503	M00646,M00647,M00699,M00718	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	2.A.6.2,8.A.1.6	-	-	Biotin_lipoyl_2,HlyD_D23
SX3_k127_5411566_10	1297865.APJD01000011_gene6527	1.642e-131	424.0	KOG3648@1|root,32VTC@2|Bacteria,1R6UN@1224|Proteobacteria,2U0NH@28211|Alphaproteobacteria,3JU6D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	fibroblast growth factor binding	-	-	-	-	-	-	-	-	-	-	-	-	Cys_rich_FGFR,GHBP
SX3_k127_5411566_12	1297865.APJD01000011_gene6526	6.16e-40	149.0	2DRQ5@1|root,33CJP@2|Bacteria,1NC87@1224|Proteobacteria,2UIQ3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Cys_rich_FGFR
SX3_k127_5411566_13	1297865.APJD01000011_gene6525	9.762e-37	140.0	2CICK@1|root,33G58@2|Bacteria,1NAV8@1224|Proteobacteria,2UG7T@28211|Alphaproteobacteria,3K1A1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5411566_4	1297865.APJD01000011_gene6524	5.421e-250	771.0	COG0654@1|root,COG0654@2|Bacteria,1QW6Y@1224|Proteobacteria,2TWQJ@28211|Alphaproteobacteria,3JS5Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	MA20_40245	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3,NAD_binding_8
SX3_k127_5411566_1	1297865.APJD01000011_gene6523	0.0	1110.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TR3P@28211|Alphaproteobacteria,3JQZH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	AMP-binding enzyme C-terminal domain	-	-	6.2.1.1	ko:K01895	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C,FAD_binding_3
SX3_k127_5411566_2	1297865.APJD01000011_gene6522	1.367e-264	818.0	COG0654@1|root,COG0654@2|Bacteria,1MWWT@1224|Proteobacteria,2TRZP@28211|Alphaproteobacteria,3JVCQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	1.14.13.24	ko:K22270	ko00362,ko01120,map00362,map01120	-	R02589	RC00046	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3
SX3_k127_5411566_11	398525.KB900701_gene1092	3.533e-90	299.0	COG1846@1|root,COG1846@2|Bacteria,1RJPG@1224|Proteobacteria,2TUJP@28211|Alphaproteobacteria,3JSFM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	MA20_40235	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_5411566_9	1297865.APJD01000011_gene6520	9.989e-135	430.0	COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,2U5B6@28211|Alphaproteobacteria,3JS39@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	MA20_40230	-	5.2.1.4	ko:K01801	ko00350,ko01100,ko01120,map00350,map01100,map01120	-	R03868	RC00867	ko00000,ko00001,ko01000	-	-	-	GST_C_2,GST_C_3,GST_N,GST_N_3
SX3_k127_5411566_5	1297865.APJD01000011_gene6519	2.216e-239	739.0	COG3435@1|root,COG3435@2|Bacteria,1MVJP@1224|Proteobacteria,2TUUS@28211|Alphaproteobacteria,3JQZN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cupin domain	MA20_40225	-	1.13.11.4	ko:K00450	ko00350,ko01100,ko01120,map00350,map01100,map01120	-	R02656	RC00764	ko00000,ko00001,ko01000	-	-	-	Cupin_2
SX3_k127_5411566_15	1230476.C207_06807	0.0001561	44.0	COG2826@1|root,COG2826@2|Bacteria,1PP49@1224|Proteobacteria,2TRVA@28211|Alphaproteobacteria,3JZ7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_38,rve
SX3_k127_541508_10	1297865.APJD01000007_gene1816	1.369e-129	414.0	COG0654@1|root,COG0654@2|Bacteria,1MX9R@1224|Proteobacteria,2TR4U@28211|Alphaproteobacteria,3JSWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.14.13.127	ko:K05712,ko:K20218	ko00360,ko00623,ko01120,ko01220,map00360,map00623,map01120,map01220	M00545	R06786,R06787,R11197,R11198	RC00236,RC00389	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_541508_3	1297865.APJD01000007_gene1815	2.112e-229	709.0	COG0346@1|root,COG0346@2|Bacteria,1MUWY@1224|Proteobacteria,2TTMJ@28211|Alphaproteobacteria,3JUBI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	1.13.11.2	ko:K00446	ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220	M00569	R00816,R04089,R05295,R05404,R05406,R07795	RC00387,RC00643,RC01075,RC01364,RC01914	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_541508_1	1297865.APJD01000007_gene1814	0.0	1261.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JSAE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,HAMP,MHYT,PAS_7,dCache_1,dCache_3
SX3_k127_541508_4	1297865.APJD01000007_gene1813	7.205e-219	679.0	COG1018@1|root,COG1018@2|Bacteria,1MU6E@1224|Proteobacteria,2TRE9@28211|Alphaproteobacteria,3JUVZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Oxidoreductase FAD-binding domain	-	-	-	ko:K21832	-	-	-	-	ko00000	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
SX3_k127_541508_8	1297865.APJD01000007_gene1812	7.406e-148	470.0	COG1802@1|root,COG1802@2|Bacteria,1NWSI@1224|Proteobacteria,2TTXQ@28211|Alphaproteobacteria,3JTR0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	MA20_45020	-	-	ko:K11475	-	-	-	-	ko00000,ko03000	-	-	-	FCD,GntR
SX3_k127_541508_2	1297865.APJD01000007_gene1811	5.281e-240	743.0	COG4638@1|root,COG4638@2|Bacteria,1MV2G@1224|Proteobacteria,2TT1V@28211|Alphaproteobacteria,3JSR9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske [2Fe-2S] domain	MA20_45025	-	-	-	-	-	-	-	-	-	-	-	PaO,Rieske
SX3_k127_541508_5	1297865.APJD01000007_gene1810	6.7e-208	649.0	28NMJ@1|root,2ZBN2@2|Bacteria,1NMEG@1224|Proteobacteria,2U0BR@28211|Alphaproteobacteria,3JU07@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2778)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2778
SX3_k127_541508_0	1297865.APJD01000007_gene1809	0.0	1528.0	COG3290@1|root,COG5001@1|root,COG3290@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TV0G@28211|Alphaproteobacteria,3K6XF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,PAS_4,PAS_7
SX3_k127_541508_11	1297865.APJD01000007_gene1808	2.892e-90	297.0	COG3805@1|root,COG3805@2|Bacteria,1N2DN@1224|Proteobacteria,2U6WY@28211|Alphaproteobacteria,3JZ4Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Dopa 4,5-dioxygenase family	-	-	-	ko:K10253	-	-	-	-	ko00000,ko01000	-	-	-	DOPA_dioxygen
SX3_k127_541508_9	1297865.APJD01000007_gene1807	7.764e-133	424.0	COG0500@1|root,COG0500@2|Bacteria,1REJ2@1224|Proteobacteria,2U7T5@28211|Alphaproteobacteria,3JV3K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Nodulation protein S (NodS)	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
SX3_k127_541508_7	1297865.APJD01000007_gene1806	8.895e-155	489.0	2A6E4@1|root,30V6Z@2|Bacteria,1R7SV@1224|Proteobacteria,2U50D@28211|Alphaproteobacteria,3JXE2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_541508_6	1297865.APJD01000007_gene1805	9.352e-162	527.0	COG1024@1|root,COG1024@2|Bacteria,1MXBB@1224|Proteobacteria,2TU4V@28211|Alphaproteobacteria,3JRS0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	-	-	4.1.1.41,4.2.1.17	ko:K01692,ko:K11264	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R00923,R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00097,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_5442346_9	1297865.APJD01000011_gene6838	9.295e-72	242.0	COG2124@1|root,COG2124@2|Bacteria,1MY2E@1224|Proteobacteria,2TTFN@28211|Alphaproteobacteria,3JRSU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_5442346_6	1297865.APJD01000011_gene6839	3.884e-145	461.0	COG1309@1|root,COG1309@2|Bacteria,1Q1V3@1224|Proteobacteria,2V9GT@28211|Alphaproteobacteria,3JQWU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WHG domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
SX3_k127_5442346_3	1297865.APJD01000011_gene6840	3.215e-186	583.0	COG0697@1|root,COG0697@2|Bacteria,1NEYM@1224|Proteobacteria,2TUZT@28211|Alphaproteobacteria,3JXGF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_20630	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_5442346_18	398525.KB900701_gene2334	5.556e-18	96.0	COG0697@1|root,COG0697@2|Bacteria	2|Bacteria	EG	spore germination	-	-	-	-	-	-	-	-	-	-	-	-	EamA,HAMP,SpoIIE,dCache_1
SX3_k127_5442346_12	1297865.APJD01000011_gene6842	1.627e-44	162.0	2EIKT@1|root,33CC3@2|Bacteria,1N2RM@1224|Proteobacteria,2UD5M@28211|Alphaproteobacteria,3K02V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5442346_19	1298867.AUES01000028_gene2599	1.344e-10	63.0	2BICD@1|root,32CIG@2|Bacteria,1NMAS@1224|Proteobacteria,2UMS4@28211|Alphaproteobacteria,3K1Z5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5442346_15	172088.AUGA01000001_gene6466	6.439e-25	107.0	2AH3D@1|root,317CT@2|Bacteria,1NJJR@1224|Proteobacteria,2UMH1@28211|Alphaproteobacteria,3K1SM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5442346_13	1297865.APJD01000011_gene6844	5.929e-39	146.0	29ZK8@1|root,314NI@2|Bacteria,1N47A@1224|Proteobacteria,2UCGV@28211|Alphaproteobacteria,3K0EF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5442346_5	1297865.APJD01000011_gene6845	4.792e-148	468.0	COG1305@1|root,COG1305@2|Bacteria,1R9XR@1224|Proteobacteria,2U6C1@28211|Alphaproteobacteria,3JXU0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Transglutaminase-like superfamily	MA20_22505	-	-	-	-	-	-	-	-	-	-	-	Transglut_core
SX3_k127_5442346_2	1297865.APJD01000011_gene6846	3.71e-191	598.0	COG0697@1|root,COG0697@2|Bacteria,1R51G@1224|Proteobacteria,2U2JQ@28211|Alphaproteobacteria,3JT6N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_5442346_16	1297865.APJD01000011_gene6847	5.414e-24	102.0	2C9GE@1|root,301FP@2|Bacteria,1N7P0@1224|Proteobacteria,2UG60@28211|Alphaproteobacteria,3K17Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_29325	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5442346_11	1297865.APJD01000011_gene6848	4.06e-66	228.0	2A849@1|root,30X50@2|Bacteria,1RFJ0@1224|Proteobacteria,2U7CP@28211|Alphaproteobacteria,3JZ4C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5442346_8	1297865.APJD01000011_gene6849	6.216e-77	261.0	2A6RI@1|root,30VJP@2|Bacteria,1RA9C@1224|Proteobacteria,2U5GJ@28211|Alphaproteobacteria,3JY22@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Phage_holin_3_6
SX3_k127_5442346_10	1297865.APJD01000011_gene6850	4.858e-68	233.0	COG4575@1|root,COG4575@2|Bacteria,1RHUR@1224|Proteobacteria,2UAZ1@28211|Alphaproteobacteria,3JZGI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial protein of unknown function (DUF883)	MA20_18275	-	-	-	-	-	-	-	-	-	-	-	DUF883
SX3_k127_5442346_1	1297865.APJD01000011_gene6851	7.803e-222	693.0	COG0628@1|root,COG0628@2|Bacteria,1MXXU@1224|Proteobacteria,2TVPN@28211|Alphaproteobacteria,3JQWE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AI-2E family transporter	-	-	-	-	-	-	-	-	-	-	-	-	AI-2E_transport
SX3_k127_5442346_4	1297865.APJD01000011_gene6852	2.917e-171	540.0	COG1376@1|root,COG1376@2|Bacteria,1MVYT@1224|Proteobacteria,2U60K@28211|Alphaproteobacteria,3JT37@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_5442346_7	1297865.APJD01000011_gene6853	9.76e-137	437.0	2CKRE@1|root,34B8D@2|Bacteria,1PM9F@1224|Proteobacteria,2U1FJ@28211|Alphaproteobacteria,3JTCD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2865)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2865
SX3_k127_5442346_17	1297865.APJD01000011_gene6854	3.437e-19	88.0	2EUBI@1|root,33MTW@2|Bacteria,1N7F3@1224|Proteobacteria,2UFS4@28211|Alphaproteobacteria,3K0VG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_18250	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5442346_0	1297865.APJD01000011_gene6855	0.0	1018.0	COG2225@1|root,COG2225@2|Bacteria,1MVEV@1224|Proteobacteria,2TS9R@28211|Alphaproteobacteria,3JQN2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA	glcB	GO:0000287,GO:0003674,GO:0003824,GO:0004474,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009436,GO:0009987,GO:0016054,GO:0016740,GO:0016746,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0046395,GO:0046487,GO:0046872,GO:0046912,GO:0071704,GO:0072329,GO:1901575	2.3.3.9	ko:K01638	ko00620,ko00630,ko01100,ko01110,ko01120,ko01200,map00620,map00630,map01100,map01110,map01120,map01200	M00012	R00472	RC00004,RC00308,RC02747	ko00000,ko00001,ko00002,ko01000	-	-	-	Malate_synthase
SX3_k127_5447074_42	1297865.APJD01000022_gene370	2.533e-18	86.0	COG4227@1|root,COG4227@2|Bacteria,1MU8I@1224|Proteobacteria,2TRIT@28211|Alphaproteobacteria,3JR5I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Domain of unknown function (DUF1738)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1738
SX3_k127_5447074_12	224911.27349865	3.548e-128	423.0	COG1475@1|root,COG1475@2|Bacteria,1R7PT@1224|Proteobacteria,2TZ22@28211|Alphaproteobacteria,3JWF7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	ParB-like nuclease domain	-	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
SX3_k127_5447074_34	1038867.AXAY01000009_gene5587	1.961e-33	145.0	COG5268@1|root,COG5268@2|Bacteria,1MZ8D@1224|Proteobacteria,2UBWQ@28211|Alphaproteobacteria,3JZM5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Type IV secretory pathway, VirB3-like protein	-	-	-	ko:K20529	ko02024,map02024	-	-	-	ko00000,ko00001,ko02044	3.A.7.4	-	-	VirB3
SX3_k127_5447074_33	411684.HPDFL43_13425	3.672e-34	138.0	COG4270@1|root,COG4270@2|Bacteria,1P3MC@1224|Proteobacteria,2TX4H@28211|Alphaproteobacteria,43QRG@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	DoxX-like family	-	-	-	-	-	-	-	-	-	-	-	-	DoxX_2
SX3_k127_5447074_18	288000.BBta_2664	1.741e-94	317.0	COG1741@1|root,COG1741@2|Bacteria,1MWIP@1224|Proteobacteria,2TRHR@28211|Alphaproteobacteria,3JUW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Pirin C-terminal cupin domain	-	-	-	ko:K06911	-	-	-	-	ko00000	-	-	-	Pirin,Pirin_C
SX3_k127_5447074_21	859657.RPSI07_mp0548	1.826e-83	281.0	COG1182@1|root,COG1182@2|Bacteria,1P59R@1224|Proteobacteria,2VRXB@28216|Betaproteobacteria,1KGYQ@119060|Burkholderiaceae	28216|Betaproteobacteria	I	Flavodoxin-like fold	-	-	-	ko:K01118	-	-	-	-	ko00000,ko01000	-	-	-	Flavodoxin_2
SX3_k127_5447074_11	136993.KB900627_gene208	1.755e-128	418.0	COG0583@1|root,COG0583@2|Bacteria,1MZTA@1224|Proteobacteria,2U1KF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5447074_44	1040989.AWZU01000019_gene1890	3.184e-15	84.0	2ADU3@1|root,313JS@2|Bacteria,1N74I@1224|Proteobacteria,2UF9R@28211|Alphaproteobacteria,3K18S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_31	288000.BBta_2758	2.755e-40	155.0	COG1416@1|root,COG1416@2|Bacteria,1R9PK@1224|Proteobacteria,2U35I@28211|Alphaproteobacteria,3JVM4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	ko:K09004	-	-	-	-	ko00000	-	-	-	DrsE
SX3_k127_5447074_32	1197906.CAJQ02000003_gene3167	8.689e-37	147.0	COG0526@1|root,COG0526@2|Bacteria,1R8RZ@1224|Proteobacteria,2U2T2@28211|Alphaproteobacteria,3JR91@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CO	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,Redoxin
SX3_k127_5447074_41	78245.Xaut_2684	2.221e-20	94.0	COG0654@1|root,COG0654@2|Bacteria,1MV8T@1224|Proteobacteria,2TRB8@28211|Alphaproteobacteria,3F0NU@335928|Xanthobacteraceae	28211|Alphaproteobacteria	C	FAD binding domain	pobA	GO:0000166,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016705,GO:0016709,GO:0018659,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363	1.14.13.2	ko:K00481	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R01298	RC00046	ko00000,ko00001,ko01000	-	-	-	FAD_binding_3
SX3_k127_5447074_14	1429046.RR21198_1165	1.61e-107	362.0	COG2508@1|root,COG2508@2|Bacteria,2GP6C@201174|Actinobacteria,4FVFC@85025|Nocardiaceae	201174|Actinobacteria	QT	PucR C-terminal helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_30
SX3_k127_5447074_1	1429046.RR21198_1164	0.0	1081.0	COG0657@1|root,COG2072@1|root,COG0657@2|Bacteria,COG2072@2|Bacteria,2GKYU@201174|Actinobacteria,4FZ2I@85025|Nocardiaceae	201174|Actinobacteria	P	Flavin-binding monooxygenase-like	-	-	1.14.13.22	ko:K03379	ko00930,ko01120,ko01220,map00930,map01120,map01220	-	R02231,R06622	RC00662,RC01550	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_3,FMO-like,NAD_binding_8,Pyr_redox_3
SX3_k127_5447074_13	743719.PaelaDRAFT_1885	7.457e-110	362.0	COG1250@1|root,COG1250@2|Bacteria,1TPJS@1239|Firmicutes,4HA59@91061|Bacilli,26VG1@186822|Paenibacillaceae	91061|Bacilli	I	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	-	-	1.1.1.157	ko:K00074	ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120	-	R01976,R05576,R06941	RC00029,RC00117	ko00000,ko00001,ko01000	-	-	-	3HCDH,3HCDH_N
SX3_k127_5447074_46	69328.PVLB_26432	1.88e-08	61.0	COG2272@1|root,COG2272@2|Bacteria,1MVQZ@1224|Proteobacteria,1RPFW@1236|Gammaproteobacteria	1236|Gammaproteobacteria	I	Belongs to the type-B carboxylesterase lipase family	-	-	-	ko:K03929	-	-	-	-	ko00000,ko01000	-	CE10	-	COesterase
SX3_k127_5447074_48	224911.27354680	0.0001992	50.0	COG1304@1|root,COG1304@2|Bacteria,1MUEZ@1224|Proteobacteria,2TQNW@28211|Alphaproteobacteria,3JSRD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FMN-dependent dehydrogenase	-	-	1.1.99.31	ko:K15054	ko00627,ko01120,map00627,map01120	-	R04160,R07664	RC00240	ko00000,ko00001,ko01000	-	-	-	FMN_dh
SX3_k127_5447074_30	443598.AUFA01000022_gene3286	5.446e-45	171.0	COG1414@1|root,COG1414@2|Bacteria,1QRZN@1224|Proteobacteria,2TU6N@28211|Alphaproteobacteria,3JW87@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial transcriptional regulator	-	-	-	ko:K05818	-	-	-	-	ko00000,ko03000	-	-	-	HTH_IclR,IclR
SX3_k127_5447074_45	319224.Sputcn32_1390	7.082e-10	63.0	COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,1S2I8@1236|Gammaproteobacteria,2Q98H@267890|Shewanellaceae	1236|Gammaproteobacteria	O	PFAM Glutathione S-transferase	maiA	GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006558,GO:0006559,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016034,GO:0016054,GO:0016853,GO:0016859,GO:0017144,GO:0019439,GO:0019752,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222	5.2.1.2,5.2.1.4	ko:K01800,ko:K01801	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R03181,R03868	RC00867	ko00000,ko00001,ko00002,ko01000	-	-	-	GST_C,GST_C_2,GST_C_3,GST_N,GST_N_3
SX3_k127_5447074_36	1336243.JAEA01000014_gene3591	1.38e-28	116.0	COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,2U5B6@28211|Alphaproteobacteria,1JR40@119045|Methylobacteriaceae	28211|Alphaproteobacteria	O	PFAM Glutathione S-transferase	maiA	-	5.2.1.2,5.2.1.4	ko:K01800,ko:K01801	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R03181,R03868	RC00867	ko00000,ko00001,ko00002,ko01000	-	-	-	GST_C_2,GST_N,GST_N_2,GST_N_3
SX3_k127_5447074_37	420324.KI911965_gene446	2.831e-23	101.0	COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,2U5B6@28211|Alphaproteobacteria,1JR40@119045|Methylobacteriaceae	28211|Alphaproteobacteria	O	PFAM Glutathione S-transferase	maiA	-	5.2.1.2,5.2.1.4	ko:K01800,ko:K01801	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R03181,R03868	RC00867	ko00000,ko00001,ko00002,ko01000	-	-	-	GST_C_2,GST_N,GST_N_2,GST_N_3
SX3_k127_5447074_5	392499.Swit_3393	2.438e-196	635.0	COG1018@1|root,COG2124@1|root,COG1018@2|Bacteria,COG2124@2|Bacteria,1MY2E@1224|Proteobacteria,2TTFN@28211|Alphaproteobacteria,2K4EB@204457|Sphingomonadales	204457|Sphingomonadales	C	Cytochrome p450	-	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_5447074_39	319003.Bra1253DRAFT_07044	3.831e-21	103.0	COG2197@1|root,COG2197@2|Bacteria,1QAMX@1224|Proteobacteria,2VFE7@28211|Alphaproteobacteria,3K3UP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
SX3_k127_5447074_26	1231391.AMZF01000019_gene2083	1.198e-59	216.0	COG1414@1|root,COG1414@2|Bacteria,1R5VD@1224|Proteobacteria,2VP10@28216|Betaproteobacteria,3T3QK@506|Alcaligenaceae	28216|Betaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR,IclR
SX3_k127_5447074_10	1231391.AMZF01000019_gene2084	5.848e-131	428.0	COG0683@1|root,COG0683@2|Bacteria,1MXR4@1224|Proteobacteria,2VHP9@28216|Betaproteobacteria,3T1SF@506|Alcaligenaceae	28216|Betaproteobacteria	E	branched-chain amino acid	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_5447074_8	1458357.BG58_31700	4.524e-172	558.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2VIHU@28216|Betaproteobacteria,1K07Z@119060|Burkholderiaceae	28216|Betaproteobacteria	CH	PFAM monooxygenase FAD-binding	-	-	1.14.13.127	ko:K05712	ko00360,ko01120,ko01220,map00360,map01120,map01220	M00545	R06786,R06787	RC00236	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_5447074_47	595537.Varpa_5438	9.8e-07	53.0	2CCVE@1|root,333BC@2|Bacteria,1NEM8@1224|Proteobacteria,2VVY4@28216|Betaproteobacteria,4AIDG@80864|Comamonadaceae	28216|Betaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_16	159087.Daro_4098	1.237e-101	343.0	COG0411@1|root,COG0559@1|root,COG4177@1|root,COG0411@2|Bacteria,COG0559@2|Bacteria,COG4177@2|Bacteria,1MUTY@1224|Proteobacteria,2VH2P@28216|Betaproteobacteria,2KUY7@206389|Rhodocyclales	206389|Rhodocyclales	P	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01995,ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C,BPD_transp_2
SX3_k127_5447074_4	93220.LV28_07775	4.965e-204	651.0	COG0411@1|root,COG4177@1|root,COG0411@2|Bacteria,COG4177@2|Bacteria,1MUTY@1224|Proteobacteria,2VH2P@28216|Betaproteobacteria,1K2GT@119060|Burkholderiaceae	28216|Betaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01995,ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C,BPD_transp_2
SX3_k127_5447074_22	76114.ebA3560	1.948e-82	281.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2VJNG@28216|Betaproteobacteria,2KVMK@206389|Rhodocyclales	206389|Rhodocyclales	E	ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains	-	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_5447074_3	316056.RPC_3867	9.31e-238	738.0	COG0582@1|root,COG0582@2|Bacteria,1MU23@1224|Proteobacteria,2U05W@28211|Alphaproteobacteria,3JV47@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Arm-DNA-bind_3,Phage_integrase
SX3_k127_5447074_0	1297865.APJD01000032_gene1657	0.0	3568.0	COG1075@1|root,COG4995@1|root,COG1075@2|Bacteria,COG4995@2|Bacteria,1MUIQ@1224|Proteobacteria,2U1J0@28211|Alphaproteobacteria,3K177@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CHAT domain	-	-	-	-	-	-	-	-	-	-	-	-	CHAT,LCAT
SX3_k127_5447074_29	1297865.APJD01000032_gene1656	5.99e-54	190.0	2EHBN@1|root,33B3H@2|Bacteria,1RHRG@1224|Proteobacteria,2U95X@28211|Alphaproteobacteria,3JZJ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_25	1297865.APJD01000032_gene1655	2.233e-61	213.0	2DNNN@1|root,32YAU@2|Bacteria,1NA5K@1224|Proteobacteria,2UFEY@28211|Alphaproteobacteria,3JZYF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_9	1230476.C207_06836	1.044e-137	439.0	COG1192@1|root,COG1192@2|Bacteria,1MWH3@1224|Proteobacteria,2U100@28211|Alphaproteobacteria,3JU41@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	AAA domain	MA20_05060	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31,CbiA
SX3_k127_5447074_43	1297865.APJD01000032_gene1653	9.582e-16	79.0	2AG6W@1|root,316BX@2|Bacteria,1NH68@1224|Proteobacteria,2UJC7@28211|Alphaproteobacteria,3K1V9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_28	1297865.APJD01000032_gene1652	5.709e-54	190.0	2E86V@1|root,332K3@2|Bacteria,1RIS4@1224|Proteobacteria,2U9AV@28211|Alphaproteobacteria,3JZHW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4282)	MA20_05355	-	-	-	-	-	-	-	-	-	-	-	DUF4282
SX3_k127_5447074_17	1297865.APJD01000032_gene1651	4.64e-96	319.0	COG2030@1|root,COG2030@2|Bacteria,1RIBV@1224|Proteobacteria,2U9QR@28211|Alphaproteobacteria,3JY1N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	MaoC like domain	MA20_05350	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
SX3_k127_5447074_15	1297865.APJD01000032_gene1650	4.999e-102	332.0	COG2030@1|root,COG2030@2|Bacteria,1RIBV@1224|Proteobacteria,2U3XU@28211|Alphaproteobacteria,3JR2D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	N-terminal half of MaoC dehydratase	MA20_05345	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydrat_N,MaoC_dehydratas
SX3_k127_5447074_40	1297865.APJD01000032_gene1649	1.472e-20	93.0	2BP91@1|root,32I0K@2|Bacteria,1NGX9@1224|Proteobacteria,2UGT9@28211|Alphaproteobacteria,3K0ZU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_05340	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_38	1297865.APJD01000032_gene1648	4.375e-22	96.0	2AE0V@1|root,313TH@2|Bacteria,1N80P@1224|Proteobacteria,2UHTQ@28211|Alphaproteobacteria,3K152@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_23	1297865.APJD01000032_gene1647	1.137e-77	261.0	2FCGW@1|root,344KB@2|Bacteria,1RB9V@1224|Proteobacteria,2U6BG@28211|Alphaproteobacteria,3JYBZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_05335	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_6	1297865.APJD01000032_gene1646	9.314e-182	574.0	2ETDR@1|root,33KXI@2|Bacteria,1N8C5@1224|Proteobacteria,2U178@28211|Alphaproteobacteria,3JSQ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_20	172088.AUGA01000044_gene6948	6.338e-84	280.0	COG3631@1|root,COG3631@2|Bacteria,1RBYP@1224|Proteobacteria,2U5DA@28211|Alphaproteobacteria,3JYF6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	MA20_05325	-	-	-	-	-	-	-	-	-	-	-	SnoaL_2
SX3_k127_5447074_27	1297865.APJD01000032_gene1644	6.024e-56	198.0	2AD80@1|root,312WZ@2|Bacteria,1N4T3@1224|Proteobacteria,2UBZY@28211|Alphaproteobacteria,3K0IS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_19	1297865.APJD01000032_gene1643	5.152e-89	300.0	COG3631@1|root,COG3631@2|Bacteria,1R9TX@1224|Proteobacteria,2U1ZV@28211|Alphaproteobacteria,3JRPB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	ko:K06893	-	-	-	-	ko00000	-	-	-	SnoaL_2
SX3_k127_5447074_2	1297865.APJD01000032_gene1642	8.62e-250	773.0	COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,2U4YK@28211|Alphaproteobacteria,3JT2R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	alpha/beta hydrolase fold	-	-	2.3.1.31	ko:K00641	ko00270,ko01100,ko01130,map00270,map01100,map01130	-	R01776	RC00004,RC00041	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
SX3_k127_5447074_7	1297865.APJD01000032_gene1641	2.271e-178	561.0	2A6IJ@1|root,30VC4@2|Bacteria,1R8TN@1224|Proteobacteria,2U572@28211|Alphaproteobacteria,3JVVH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_24	1297865.APJD01000032_gene1640	1.479e-63	218.0	2EJ1T@1|root,33CSZ@2|Bacteria,1N9U4@1224|Proteobacteria,2UDDK@28211|Alphaproteobacteria,3K071@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5447074_35	1297865.APJD01000032_gene1639	2.261e-32	132.0	2AEH8@1|root,314CI@2|Bacteria,1N9UG@1224|Proteobacteria,2UGVW@28211|Alphaproteobacteria,3K1MI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_544985_1	323097.Nham_4422	6.223e-140	449.0	COG0477@1|root,COG2814@2|Bacteria,1R7QS@1224|Proteobacteria,2TUXM@28211|Alphaproteobacteria,3JVPW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_544985_0	323097.Nham_4423	0.0	1542.0	COG2217@1|root,COG2217@2|Bacteria,1R5MM@1224|Proteobacteria,2TXNK@28211|Alphaproteobacteria,3JWR1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Heavy-metal-associated domain	-	-	-	-	-	-	-	-	-	-	-	-	E1-E2_ATPase,HMA,Hydrolase
SX3_k127_544985_5	504832.OCAR_7761	6.289e-38	143.0	COG2608@1|root,COG2608@2|Bacteria,1N9WI@1224|Proteobacteria,2UGVC@28211|Alphaproteobacteria,3K14W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Heavy-metal-associated domain	-	-	-	ko:K07213	ko04978,map04978	-	-	-	ko00000,ko00001	-	-	-	HMA
SX3_k127_544985_2	1437448.AZRT01000127_gene284	3.407e-66	230.0	COG0789@1|root,COG0789@2|Bacteria,1MZ3P@1224|Proteobacteria,2UC95@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	ko:K08365	-	-	-	-	ko00000,ko03000	-	-	-	MerR,MerR-DNA-bind,MerR_1
SX3_k127_544985_3	504832.OCAR_7753	3.44e-63	219.0	COG2608@1|root,COG2608@2|Bacteria,1RDCB@1224|Proteobacteria,2UCEK@28211|Alphaproteobacteria,3K0GV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	MerT mercuric transport protein	-	-	-	ko:K08363	-	-	-	-	ko00000,ko02000	1.A.72.1	-	-	MerT
SX3_k127_544985_4	504832.OCAR_7752	5.319e-40	152.0	COG2608@1|root,COG2608@2|Bacteria,1PTNR@1224|Proteobacteria,2UD5G@28211|Alphaproteobacteria,3K0UW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	mercury ion transmembrane transporter activity	-	-	-	ko:K08364	-	-	-	-	ko00000,ko02000	1.A.72.1	-	-	HMA
SX3_k127_544985_6	1437448.AZRT01000127_gene280	3.003e-18	88.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TU0K@28211|Alphaproteobacteria	28211|Alphaproteobacteria	C	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family	merA	-	1.16.1.1	ko:K00520	-	-	-	-	ko00000,ko01000	-	-	-	Pyr_redox_2,Pyr_redox_dim
SX3_k127_545243_0	1297865.APJD01000005_gene3696	0.0	1002.0	COG0427@1|root,COG0427@2|Bacteria,1MUGE@1224|Proteobacteria,2TZDG@28211|Alphaproteobacteria,3JQP8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Acetyl-CoA hydrolase/transferase C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AcetylCoA_hyd_C
SX3_k127_545243_1	1297865.APJD01000005_gene3695	3.553e-211	660.0	COG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,2TR3S@28211|Alphaproteobacteria,3JQR2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	tolC	-	-	ko:K12340	ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133	M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko02044	1.B.17,2.A.6.2	-	-	OEP
SX3_k127_5461714_3	1297865.APJD01000006_gene4370	6.746e-105	340.0	COG1763@1|root,COG1763@2|Bacteria,1RD3Q@1224|Proteobacteria,2U5T0@28211|Alphaproteobacteria,3JSEJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Molybdopterin guanine dinucleotide synthesis protein B	mobB	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363	-	ko:K03753	-	-	-	-	ko00000	-	-	-	MobB
SX3_k127_5461714_9	172088.AUGA01000004_gene4162	5.619e-46	168.0	COG0425@1|root,COG0425@2|Bacteria,1MZA5@1224|Proteobacteria,2UF3C@28211|Alphaproteobacteria,3K05E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the sulfur carrier protein TusA family	tusA	-	-	ko:K04085	ko04122,map04122	-	-	-	ko00000,ko00001,ko01000,ko03016	-	-	-	TusA
SX3_k127_5461714_1	1297865.APJD01000006_gene4372	0.0	1121.0	COG2807@1|root,COG2807@2|Bacteria,1QU0F@1224|Proteobacteria,2TTB4@28211|Alphaproteobacteria,3JT45@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Major facilitator Superfamily	MA20_10260	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_5461714_10	1297865.APJD01000006_gene4373	8.425e-40	149.0	29CEI@1|root,2ZZCZ@2|Bacteria,1MZYT@1224|Proteobacteria,2UC1X@28211|Alphaproteobacteria,3K07H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5461714_0	1297865.APJD01000006_gene4374	0.0	1537.0	COG0466@1|root,COG0466@2|Bacteria,1MUV2@1224|Proteobacteria,2U0IK@28211|Alphaproteobacteria,3JTMI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner	MA20_45155	-	3.4.21.53	ko:K01338	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	AAA,LON_substr_bdg,Lon_C
SX3_k127_5461714_5	1297865.APJD01000006_gene4375	1.359e-80	271.0	COG0071@1|root,COG0071@2|Bacteria,1N0RH@1224|Proteobacteria,2UE1E@28211|Alphaproteobacteria,3JYYY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Hsp20/alpha crystallin family	MA20_45160	-	-	-	-	-	-	-	-	-	-	-	HSP20
SX3_k127_5461714_6	1297865.APJD01000006_gene4376	3.722e-55	194.0	2A6E5@1|root,30V70@2|Bacteria,1N183@1224|Proteobacteria,2UEBX@28211|Alphaproteobacteria,3K0HT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5461714_11	1297865.APJD01000006_gene4377	4.035e-33	133.0	2BUKS@1|root,32PXA@2|Bacteria,1NEHH@1224|Proteobacteria,2UH46@28211|Alphaproteobacteria,3K1MF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5461714_2	1297865.APJD01000006_gene4378	3.013e-192	601.0	COG0329@1|root,COG0329@2|Bacteria,1NVPP@1224|Proteobacteria,2TVEX@28211|Alphaproteobacteria,3JSMF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)	-	-	4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000	-	-	-	DHDPS
SX3_k127_5461714_8	1297865.APJD01000006_gene4379	6.147e-48	173.0	2DFR9@1|root,2ZSS2@2|Bacteria,1N34E@1224|Proteobacteria,2UBT9@28211|Alphaproteobacteria,3K07F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5461714_7	1297865.APJD01000006_gene4380	2.194e-52	186.0	2C5RQ@1|root,3023J@2|Bacteria,1NB4R@1224|Proteobacteria,2UFF8@28211|Alphaproteobacteria,3K0WK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5461714_4	1297865.APJD01000006_gene4381	3.067e-95	315.0	299PQ@1|root,2ZWS1@2|Bacteria,1RA8G@1224|Proteobacteria,2U5XI@28211|Alphaproteobacteria,3JYEE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5468020_3	1297865.APJD01000001_gene5905	1.993e-124	398.0	COG1509@1|root,COG1509@2|Bacteria,1MUPJ@1224|Proteobacteria,2TT31@28211|Alphaproteobacteria,3JQS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Lysine-2,3-aminomutase	kamA	-	5.4.3.2	ko:K01843	ko00310,map00310	-	R00461	RC00303	ko00000,ko00001,ko01000	-	-	-	Fer4_12,Fer4_14,LAM_C,Radical_SAM
SX3_k127_5468020_5	1297865.APJD01000001_gene5904	1.197e-37	145.0	2DHZ0@1|root,301EV@2|Bacteria,1N7IF@1224|Proteobacteria,2UFWB@28211|Alphaproteobacteria,3K0XQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5468020_6	1230476.C207_01397	3.522e-37	144.0	2C1E2@1|root,2ZZIG@2|Bacteria,1N0II@1224|Proteobacteria,2UCRN@28211|Alphaproteobacteria,3K067@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5468020_1	1230476.C207_01398	1.476e-218	682.0	COG0722@1|root,COG0722@2|Bacteria,1MU5Q@1224|Proteobacteria,2TUJX@28211|Alphaproteobacteria,3JUN0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)	aroG	GO:0003674,GO:0003824,GO:0003849,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019438,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.54	ko:K01626	ko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024	M00022	R01826	RC00435	ko00000,ko00001,ko00002,ko01000	-	-	-	DAHP_synth_1
SX3_k127_5468020_2	1297865.APJD01000001_gene5902	4.499e-214	667.0	COG2339@1|root,COG2339@2|Bacteria,1MX22@1224|Proteobacteria,2U0R6@28211|Alphaproteobacteria,3JUT1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protease prsW family	MA20_30430	-	-	-	-	-	-	-	-	-	-	-	PrsW-protease
SX3_k127_5468020_7	1298867.AUES01000030_gene2456	4.779e-30	120.0	COG3205@1|root,COG3205@2|Bacteria,1Q4BY@1224|Proteobacteria,2VAU6@28211|Alphaproteobacteria,3K5FK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Predicted membrane protein (DUF2061)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2061
SX3_k127_5468020_0	1297865.APJD01000001_gene5900	4.888e-272	837.0	COG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2TR6I@28211|Alphaproteobacteria,3JS9H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M20/M25/M40	-	-	3.5.1.6,3.5.1.87	ko:K06016	ko00240,ko01100,map00240,map01100	M00046	R00905,R04666	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_5468020_4	1297865.APJD01000001_gene5899	2.165e-60	209.0	2A91E@1|root,30Y5C@2|Bacteria,1RHXR@1224|Proteobacteria,2U9N5@28211|Alphaproteobacteria,3JZVH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5472695_13	1297865.APJD01000010_gene4847	3.372e-42	157.0	COG2513@1|root,COG2513@2|Bacteria,1N4VT@1224|Proteobacteria,2TUUN@28211|Alphaproteobacteria,3JRMG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate	-	-	4.1.1.3	ko:K01003	ko00620,ko01100,map00620,map01100	-	R00217	RC00040	ko00000,ko00001,ko01000	-	-	-	PEP_mutase
SX3_k127_5472695_3	1230476.C207_06006	0.0	1302.0	COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,2TRC2@28211|Alphaproteobacteria,3JSG7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Biotin carboxylase C-terminal domain	pccA	GO:0003674,GO:0003824,GO:0004658,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009374,GO:0009987,GO:0016421,GO:0016874,GO:0016885,GO:0017144,GO:0019752,GO:0019842,GO:0019899,GO:0031406,GO:0031974,GO:0032787,GO:0033218,GO:0033293,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0070013,GO:0071704,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901681	6.4.1.3	ko:K01965	ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200	M00373,M00741	R01859	RC00097,RC00609	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2
SX3_k127_5472695_14	172088.AUGA01000041_gene4801	5.838e-38	143.0	2EQWN@1|root,33IGF@2|Bacteria,1NA2U@1224|Proteobacteria,2UH9R@28211|Alphaproteobacteria,3K13C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5472695_6	1297865.APJD01000010_gene4844	2.522e-173	543.0	COG1525@1|root,COG1525@2|Bacteria,1ND4R@1224|Proteobacteria,2U0QF@28211|Alphaproteobacteria,3JRE6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Staphylococcal nuclease homologue	MA20_17580	-	-	-	-	-	-	-	-	-	-	-	SNase
SX3_k127_5472695_2	1297865.APJD01000010_gene4843	0.0	1620.0	COG0784@1|root,COG2202@1|root,COG4191@1|root,COG0784@2|Bacteria,COG2202@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JR0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	MA20_35885	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_3,PAS_4,Response_reg
SX3_k127_5472695_11	1297865.APJD01000010_gene4842	1.867e-49	185.0	COG0797@1|root,COG0797@2|Bacteria,1RJ0P@1224|Proteobacteria,2UEDR@28211|Alphaproteobacteria,3JZJX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Lytic transglycolase	-	-	-	ko:K03642	-	-	-	-	ko00000	-	-	-	DPBB_1
SX3_k127_5472695_1	1297865.APJD01000010_gene4841	0.0	1786.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JQQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Cache domain	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_7,PAS_8,dCache_1
SX3_k127_5472695_8	1297865.APJD01000010_gene4840	1.71e-109	355.0	2A6VF@1|root,30VPZ@2|Bacteria,1RAZ8@1224|Proteobacteria,2U5J6@28211|Alphaproteobacteria,3JYM1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5472695_12	1297865.APJD01000010_gene4839	7.774e-43	158.0	2E48M@1|root,32Z4G@2|Bacteria,1N6NZ@1224|Proteobacteria,2UH8Q@28211|Alphaproteobacteria,3K0JE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_36460	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5472695_10	1297865.APJD01000010_gene4838	1.857e-73	247.0	29VSU@1|root,30HAF@2|Bacteria,1MYVY@1224|Proteobacteria,2UACB@28211|Alphaproteobacteria,3JZX5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5472695_5	113395.AXAI01000017_gene4756	9.008e-179	569.0	COG0845@1|root,COG0845@2|Bacteria,1MX8W@1224|Proteobacteria,2TRPM@28211|Alphaproteobacteria,3JQVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K15727	-	-	-	-	ko00000,ko02000	8.A.1.2.1	-	-	HlyD_D23
SX3_k127_5472695_0	1297865.APJD01000010_gene4836	0.0	2031.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
SX3_k127_5472695_4	1297865.APJD01000010_gene4835	0.0	1202.0	COG3119@1|root,COG3119@2|Bacteria,1QW7Q@1224|Proteobacteria,2TWRI@28211|Alphaproteobacteria,3JSYU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Type I phosphodiesterase / nucleotide pyrophosphatase	-	-	-	-	-	-	-	-	-	-	-	-	Phosphodiest
SX3_k127_5472695_9	1230476.C207_06018	5.569e-108	351.0	28N2A@1|root,2ZB84@2|Bacteria,1R8N1@1224|Proteobacteria,2U7C7@28211|Alphaproteobacteria,3JUPM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_35720	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5472695_7	1297865.APJD01000002_gene4185	2.074e-146	463.0	COG0450@1|root,COG0450@2|Bacteria,1MX2B@1224|Proteobacteria,2TT09@28211|Alphaproteobacteria,3JQWD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	C-terminal domain of 1-Cys peroxiredoxin	MA20_35715	-	1.11.1.15	ko:K03386	ko04214,map04214	-	-	-	ko00000,ko00001,ko01000,ko04147	-	-	-	1-cysPrx_C,AhpC-TSA
SX3_k127_5472695_15	1297865.APJD01000002_gene4184	1.103e-25	106.0	COG0415@1|root,COG0415@2|Bacteria,1MV9Y@1224|Proteobacteria,2TSDP@28211|Alphaproteobacteria,3JSS4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA photolyase	phrB	GO:0000003,GO:0000166,GO:0000719,GO:0001101,GO:0002252,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0003904,GO:0003913,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006325,GO:0006338,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007623,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009314,GO:0009414,GO:0009415,GO:0009416,GO:0009605,GO:0009606,GO:0009607,GO:0009615,GO:0009628,GO:0009637,GO:0009638,GO:0009642,GO:0009645,GO:0009646,GO:0009648,GO:0009719,GO:0009725,GO:0009785,GO:0009791,GO:0009881,GO:0009882,GO:0009888,GO:0009893,GO:0009909,GO:0009911,GO:0009987,GO:0010033,GO:0010035,GO:0010073,GO:0010075,GO:0010118,GO:0010228,GO:0010244,GO:0010617,GO:0014070,GO:0016043,GO:0016604,GO:0016829,GO:0016830,GO:0017076,GO:0019222,GO:0019637,GO:0019725,GO:0022414,GO:0022603,GO:0023052,GO:0030003,GO:0030522,GO:0030554,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0033993,GO:0034641,GO:0035639,GO:0036094,GO:0038023,GO:0040008,GO:0042221,GO:0042592,GO:0042726,GO:0042752,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048037,GO:0048507,GO:0048509,GO:0048511,GO:0048518,GO:0048522,GO:0048571,GO:0048573,GO:0048574,GO:0048580,GO:0048582,GO:0048583,GO:0048608,GO:0048638,GO:0048731,GO:0048831,GO:0048856,GO:0048878,GO:0050660,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051276,GO:0051480,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055086,GO:0060089,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0071840,GO:0071949,GO:0072387,GO:0072503,GO:0072507,GO:0090304,GO:0097159,GO:0097367,GO:0098542,GO:0098771,GO:0104004,GO:0140097,GO:1900618,GO:1901265,GO:1901360,GO:1901363,GO:1901371,GO:1901564,GO:1901700,GO:1902347,GO:1905421,GO:2000024,GO:2000026,GO:2000028,GO:2000241,GO:2000243,GO:2000377,GO:2000379	4.1.99.3	ko:K01669	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	DNA_photolyase,FAD_binding_7
SX3_k127_5485011_2	1297865.APJD01000009_gene2794	5.837e-194	605.0	COG0583@1|root,COG0583@2|Bacteria,1MV5N@1224|Proteobacteria,2TRAX@28211|Alphaproteobacteria,3JRIM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR family	MA20_05050	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5485011_3	1297865.APJD01000009_gene2795	3.228e-193	605.0	COG0329@1|root,COG0329@2|Bacteria,1R45B@1224|Proteobacteria,2U0PG@28211|Alphaproteobacteria,3JUAU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)	MA20_05055	-	4.3.3.7	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R10147	RC03062,RC03063	ko00000,ko00001,ko00002,ko01000	-	-	-	DHDPS
SX3_k127_5485011_0	1297865.APJD01000009_gene2796	0.0	1527.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,3JQNW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPase, P-type (transporting), HAD superfamily, subfamily IC	-	-	3.6.3.54	ko:K17686	ko01524,ko04016,map01524,map04016	-	R00086	RC00002	ko00000,ko00001,ko01000	3.A.3.5	-	-	E1-E2_ATPase,Hydrolase,YHS
SX3_k127_5485011_8	1230476.C207_03557	3.267e-52	186.0	COG1937@1|root,COG1937@2|Bacteria,1N9P2@1224|Proteobacteria,2UF3F@28211|Alphaproteobacteria,3JZE7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal-sensitive transcriptional repressor	-	-	-	ko:K21600	-	-	-	-	ko00000,ko03000	-	-	-	Trns_repr_metal
SX3_k127_5485011_1	1297865.APJD01000009_gene2798	2.551e-230	716.0	COG0012@1|root,COG0012@2|Bacteria,1MVM4@1224|Proteobacteria,2TRAD@28211|Alphaproteobacteria,3JRUC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner	ychF	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464	-	ko:K06942	-	-	-	-	ko00000,ko03009	-	-	-	MMR_HSR1,YchF-GTPase_C
SX3_k127_5485011_6	1230476.C207_03555	1.935e-129	418.0	COG0193@1|root,COG0193@2|Bacteria,1MX1P@1224|Proteobacteria,2TT6Q@28211|Alphaproteobacteria,3JSPW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis	pth	GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101	3.1.1.29	ko:K01056	-	-	-	-	ko00000,ko01000,ko03012	-	-	-	Pept_tRNA_hydro
SX3_k127_5485011_5	1297865.APJD01000009_gene2800	1.162e-138	442.0	COG1825@1|root,COG1825@2|Bacteria,1RDH0@1224|Proteobacteria,2U5P0@28211|Alphaproteobacteria,3JSHR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance	ctc	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02897	ko03010,map03010	M00178	-	-	ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L25p,Ribosomal_TL5_C
SX3_k127_5485011_9	1297865.APJD01000009_gene2801	2.255e-43	160.0	COG2960@1|root,COG2960@2|Bacteria,1N725@1224|Proteobacteria,2UFEP@28211|Alphaproteobacteria,3K0BI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Membrane fusogenic activity	MA20_05375	-	-	ko:K09806	-	-	-	-	ko00000	-	-	-	BMFP
SX3_k127_5485011_4	1297865.APJD01000009_gene2802	1.485e-156	502.0	COG0412@1|root,COG0412@2|Bacteria,1NRB4@1224|Proteobacteria,2TU91@28211|Alphaproteobacteria,3JUQK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Dienelactone hydrolase family	-	-	3.1.1.45	ko:K01061	ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130	-	R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222	RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686	ko00000,ko00001,ko01000	-	-	-	DLH
SX3_k127_5485011_7	1230476.C207_03551	1.797e-95	316.0	COG0454@1|root,COG0456@2|Bacteria,1R6DW@1224|Proteobacteria,2U3QR@28211|Alphaproteobacteria,3JRBT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10
SX3_k127_5485011_10	1230476.C207_03550	9.189e-07	52.0	COG0682@1|root,COG0682@2|Bacteria,1MVE3@1224|Proteobacteria,2TTNS@28211|Alphaproteobacteria,3JQZ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	lgt	-	-	ko:K13292	-	-	-	-	ko00000,ko01000	-	-	-	LGT
SX3_k127_5486717_0	1297865.APJD01000019_gene3160	0.0	1024.0	COG0138@1|root,COG0138@2|Bacteria,1MUDQ@1224|Proteobacteria,2TRMY@28211|Alphaproteobacteria,3JTQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Bifunctional purine biosynthesis protein PurH	purH	-	2.1.2.3,3.5.4.10	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	M00048	R01127,R04560	RC00026,RC00263,RC00456	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	AICARFT_IMPCHas,MGS
SX3_k127_5486717_1	1297865.APJD01000019_gene3161	8.931e-279	859.0	COG5360@1|root,COG5360@2|Bacteria,1MUJ4@1224|Proteobacteria,2TR5G@28211|Alphaproteobacteria,3JRZV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Heparinase II/III-like protein	MA20_25080	-	-	-	-	-	-	-	-	-	-	-	Hepar_II_III
SX3_k127_5494818_12	1297865.APJD01000006_gene4518	1.245e-97	321.0	COG1835@1|root,COG1835@2|Bacteria,1RB2J@1224|Proteobacteria,2U5WQ@28211|Alphaproteobacteria,3K35R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_5494818_8	1297865.APJD01000006_gene4517	2.228e-144	460.0	COG1376@1|root,COG1376@2|Bacteria,1MVYT@1224|Proteobacteria,2TUXV@28211|Alphaproteobacteria,3JUKK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_5494818_1	1297865.APJD01000006_gene4516	9.4e-323	990.0	2EB2V@1|root,3353M@2|Bacteria,1NDM7@1224|Proteobacteria,2TV7H@28211|Alphaproteobacteria,3JQS2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4403)	MA20_01580	-	-	-	-	-	-	-	-	-	-	-	DUF4403
SX3_k127_5494818_4	1297865.APJD01000006_gene4515	1.889e-259	801.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3JUH7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_5494818_17	1297865.APJD01000006_gene4514	2.169e-28	113.0	2AHFQ@1|root,317T0@2|Bacteria,1NKN1@1224|Proteobacteria,2UNFZ@28211|Alphaproteobacteria,3K1XI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5494818_15	1297865.APJD01000006_gene4513	1.727e-45	171.0	2AH3Z@1|root,317DG@2|Bacteria,1NJMR@1224|Proteobacteria,2UKSW@28211|Alphaproteobacteria,3K1XJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5494818_6	1297865.APJD01000006_gene4512	1.436e-195	617.0	COG1566@1|root,COG1566@2|Bacteria,1MXZV@1224|Proteobacteria,2TWQ4@28211|Alphaproteobacteria,3JTD1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Biotin-lipoyl like	-	-	-	ko:K01993	-	-	-	-	ko00000	-	-	-	HlyD_D23
SX3_k127_5494818_0	1297865.APJD01000006_gene4511	0.0	1470.0	COG0842@1|root,COG1668@1|root,COG0842@2|Bacteria,COG1668@2|Bacteria,1R4QG@1224|Proteobacteria,2TRYM@28211|Alphaproteobacteria,3JWVH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CPV	ABC-2 family transporter protein	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
SX3_k127_5494818_9	1380355.JNIJ01000023_gene2360	1.26e-136	446.0	COG1566@1|root,COG1566@2|Bacteria,1QW6P@1224|Proteobacteria,2TQX0@28211|Alphaproteobacteria,3JVPB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Biotin-lipoyl like	-	-	-	ko:K01993	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_5494818_2	1297865.APJD01000006_gene4509	1.528e-298	919.0	COG0584@1|root,COG0584@2|Bacteria,1MVWZ@1224|Proteobacteria,2TV4M@28211|Alphaproteobacteria,3JWR8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Glycerophosphoryl diester phosphodiesterase family	-	-	3.1.4.46	ko:K01126	ko00564,map00564	-	R01030,R01470	RC00017,RC00425	ko00000,ko00001,ko01000	-	-	-	GDPD
SX3_k127_5494818_5	1297865.APJD01000006_gene4508	1.165e-215	670.0	COG0031@1|root,COG0031@2|Bacteria,1MUBE@1224|Proteobacteria,2TR4W@28211|Alphaproteobacteria,3JRM9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	cysB	-	2.5.1.47	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021	R00897,R03601,R04859	RC00020,RC02814,RC02821	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_5494818_11	1297865.APJD01000006_gene4507	8.469e-99	323.0	COG1873@1|root,COG1873@2|Bacteria,1N6X0@1224|Proteobacteria,2UFAR@28211|Alphaproteobacteria,3JVXX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
SX3_k127_5494818_13	1297865.APJD01000006_gene4506	1.916e-78	265.0	COG3861@1|root,COG3861@2|Bacteria,1MZM2@1224|Proteobacteria,2UBTQ@28211|Alphaproteobacteria,3JYSS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PRC-barrel domain	-	-	-	-	-	-	-	-	-	-	-	-	PRC
SX3_k127_5494818_7	1297865.APJD01000006_gene4505	1.219e-152	485.0	COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,2TTKG@28211|Alphaproteobacteria,3JR9R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Two component transcriptional regulator, winged helix family	MA20_01540	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_5494818_3	1297865.APJD01000006_gene4504	2.063e-285	892.0	COG0642@1|root,COG2205@2|Bacteria,1MUAK@1224|Proteobacteria,2TSUC@28211|Alphaproteobacteria,3JSFQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
SX3_k127_5494818_16	1230476.C207_05642	1.797e-38	146.0	2ADTM@1|root,313J9@2|Bacteria,1N72A@1224|Proteobacteria,2UGQD@28211|Alphaproteobacteria,3K13V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5494818_10	1297865.APJD01000006_gene4502	3.661e-103	336.0	COG0741@1|root,COG0741@2|Bacteria,1N08U@1224|Proteobacteria,2U82R@28211|Alphaproteobacteria,3JVY0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	-	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_5494818_14	1297865.APJD01000006_gene4501	9.187e-66	225.0	COG0665@1|root,COG0665@2|Bacteria,1N1TN@1224|Proteobacteria,2TR7B@28211|Alphaproteobacteria,3JVCV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	thiO	-	1.4.3.19	ko:K03153	ko00730,ko01100,map00730,map01100	-	R07463	RC01788	ko00000,ko00001,ko01000	-	-	-	DAO
SX3_k127_550945_7	1297865.APJD01000031_gene1607	1.683e-106	345.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2TTI9@28211|Alphaproteobacteria,3JVVV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alcohol dehydrogenase GroES-like domain	-	-	1.1.1.1	ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_550945_8	1230476.C207_04465	1.119e-92	307.0	COG3448@1|root,COG3448@2|Bacteria,1R9YN@1224|Proteobacteria,2U5R2@28211|Alphaproteobacteria,3JY2C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Domain in cystathionine beta-synthase and other proteins.	-	-	-	-	-	-	-	-	-	-	-	-	CBS
SX3_k127_550945_0	1297865.APJD01000031_gene1606	0.0	1676.0	COG1042@1|root,COG1670@1|root,COG1042@2|Bacteria,COG1670@2|Bacteria,1MW98@1224|Proteobacteria,2TR24@28211|Alphaproteobacteria,3JR42@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CJ	ATP-grasp domain	MA20_38090	-	-	ko:K09181	-	-	-	-	ko00000	-	-	-	ATP-grasp_5,Acetyltransf_1,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig
SX3_k127_550945_9	1297865.APJD01000031_gene1605	2.784e-56	198.0	29IRF@1|root,305NQ@2|Bacteria,1P7ZZ@1224|Proteobacteria,2UWI9@28211|Alphaproteobacteria,3K5HJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_550945_4	1297865.APJD01000031_gene1604	3.634e-219	683.0	COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,2TSGS@28211|Alphaproteobacteria,3JSFD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Permease MlaE	-	-	-	ko:K02066	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	MlaE,STAS,STAS_2
SX3_k127_550945_6	1297865.APJD01000031_gene1603	3.248e-154	491.0	COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,2TR2I@28211|Alphaproteobacteria,3JUW2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	ABC transporter	yrbF	-	-	ko:K02065	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_tran
SX3_k127_550945_3	1297865.APJD01000031_gene1602	1.261e-231	718.0	COG1463@1|root,COG3218@1|root,COG1463@2|Bacteria,COG3218@2|Bacteria,1NNAG@1224|Proteobacteria,2TSCH@28211|Alphaproteobacteria,3JSZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	ABC-type transport auxiliary lipoprotein component	MA20_38065	-	-	ko:K02067	ko02010,map02010	M00210,M00669,M00670	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.27	-	-	ABC_trans_aux,MlaD
SX3_k127_550945_2	1297865.APJD01000031_gene1601	4.061e-257	793.0	COG0282@1|root,COG0282@2|Bacteria,1MW61@1224|Proteobacteria,2TQQQ@28211|Alphaproteobacteria,3JQN3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction	ackA	-	2.7.2.1	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	M00357,M00579	R00315,R01353	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	Acetate_kinase
SX3_k127_550945_1	1297865.APJD01000031_gene1600	0.0	1675.0	COG3957@1|root,COG3957@2|Bacteria,1MVSE@1224|Proteobacteria,2TU2E@28211|Alphaproteobacteria,3JRH2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	aldehyde-lyase activity	xfp	-	4.1.2.22,4.1.2.9	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	-	R00761,R01621	RC00032,RC00226	ko00000,ko00001,ko01000	-	-	-	XFP,XFP_C,XFP_N
SX3_k127_550945_5	1297865.APJD01000031_gene1599	1.184e-213	663.0	COG0635@1|root,COG0635@2|Bacteria,1MV1I@1224|Proteobacteria,2TRKT@28211|Alphaproteobacteria,3JVP6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the anaerobic coproporphyrinogen-III oxidase family	hemN	-	-	-	-	-	-	-	-	-	-	-	HemN_C,Radical_SAM
SX3_k127_5513330_3	398525.KB900701_gene5279	9.107e-12	64.0	COG0544@1|root,COG0544@2|Bacteria,1MUJP@1224|Proteobacteria,2TS8W@28211|Alphaproteobacteria,3JSQU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase	tig	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K03545	-	-	-	-	ko00000	-	-	-	FKBP_C,Trigger_C,Trigger_N
SX3_k127_5513330_2	1297865.APJD01000020_gene135	2.741e-132	422.0	COG0740@1|root,COG0740@2|Bacteria,1MV46@1224|Proteobacteria,2TR5M@28211|Alphaproteobacteria,3JV9B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	OU	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins	clpP	-	3.4.21.92	ko:K01358	ko04112,ko04212,map04112,map04212	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	CLP_protease
SX3_k127_5513330_0	196490.AUEZ01000022_gene905	2.512e-272	838.0	COG1219@1|root,COG1219@2|Bacteria,1MVQK@1224|Proteobacteria,2TS3R@28211|Alphaproteobacteria,3JQY9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP	clpX	GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575	-	ko:K03544	ko04112,map04112	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA_2,ClpB_D2-small,zf-C4_ClpX
SX3_k127_5513330_1	398525.KB900701_gene5276	1.25e-194	613.0	COG0466@1|root,COG0466@2|Bacteria,1MUV2@1224|Proteobacteria,2TR4E@28211|Alphaproteobacteria,3JRVR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner	lon	-	3.4.21.53	ko:K01338	ko04112,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	AAA,LON_substr_bdg,Lon_C
SX3_k127_5514305_22	1297865.APJD01000011_gene6800	1.37e-17	81.0	COG5461@1|root,COG5461@2|Bacteria,1MWWE@1224|Proteobacteria,2TU2Q@28211|Alphaproteobacteria,3JQNJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	TIGRFAM pilus (Caulobacter type) biogenesis lipoprotein CpaD	cpaD	-	-	ko:K02281	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	Pilus_CpaD
SX3_k127_5514305_7	1297865.APJD01000011_gene6799	3.311e-267	826.0	COG4963@1|root,COG4963@2|Bacteria,1MWNY@1224|Proteobacteria,2TUDS@28211|Alphaproteobacteria,3JUM3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	AAA domain	cpaE	-	-	ko:K02282	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	AAA_31,CBP_BcsQ
SX3_k127_5514305_5	1230476.C207_03049	7.118e-307	942.0	COG4962@1|root,COG4962@2|Bacteria,1R7EN@1224|Proteobacteria,2TRNT@28211|Alphaproteobacteria,3JQZ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Type II/IV secretion system protein	cpaF	-	-	ko:K02283	-	-	-	-	ko00000,ko02035,ko02044	-	-	-	T2SSE
SX3_k127_5514305_12	1297865.APJD01000011_gene6796	6.698e-199	622.0	COG4965@1|root,COG4965@2|Bacteria,1MUXK@1224|Proteobacteria,2TRBI@28211|Alphaproteobacteria,3JR8Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Type II secretion system (T2SS), protein F	MA20_18445	-	-	ko:K12510	-	-	-	-	ko00000,ko02044	-	-	-	T2SSF
SX3_k127_5514305_13	1297865.APJD01000011_gene6795	3.068e-194	607.0	COG2064@1|root,COG2064@2|Bacteria,1MWAZ@1224|Proteobacteria,2TSFA@28211|Alphaproteobacteria,3JRBE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Type II secretion system (T2SS), protein F	MA20_18450	-	-	ko:K12511	-	-	-	-	ko00000,ko02044	-	-	-	T2SSF
SX3_k127_5514305_23	323097.Nham_3476	5.215e-07	51.0	COG5567@1|root,COG5567@2|Bacteria,1NEKY@1224|Proteobacteria,2UHV1@28211|Alphaproteobacteria,3K148@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Prokaryotic lipoprotein-attachment site	-	-	-	-	-	-	-	-	-	-	-	-	LPAM_2
SX3_k127_5514305_17	1297865.APJD01000011_gene6794	1.023e-146	468.0	COG5010@1|root,COG5010@2|Bacteria,1MVTK@1224|Proteobacteria,2TVBA@28211|Alphaproteobacteria,3JTRH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Tetratricopeptide repeat	MA20_18455	-	-	-	-	-	-	-	-	-	-	-	TPR_10,TPR_12,TPR_16,TPR_19,TPR_2,TPR_4,TPR_8
SX3_k127_5514305_6	1297865.APJD01000011_gene6793	9.585e-304	933.0	COG0260@1|root,COG0260@2|Bacteria,1MUIN@1224|Proteobacteria,2TSI6@28211|Alphaproteobacteria,3JTK4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the peptidase M17 family	pepA	-	3.4.11.1	ko:K01255	ko00480,ko01100,map00480,map01100	-	R00899,R04951	RC00096,RC00141	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_M17
SX3_k127_5514305_19	335659.S23_09920	2.988e-127	411.0	COG0791@1|root,COG0791@2|Bacteria,1MW03@1224|Proteobacteria,2TSFG@28211|Alphaproteobacteria,3JQZJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	NlpC/P60 family	-	-	-	-	-	-	-	-	-	-	-	-	NLPC_P60,SH3_3
SX3_k127_5514305_4	1297865.APJD01000011_gene6791	0.0	1056.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,3JRI2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	yejF	GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008144,GO:0008150,GO:0015399,GO:0015405,GO:0015833,GO:0015893,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0035672,GO:0036094,GO:0042221,GO:0042493,GO:0042623,GO:0042626,GO:0042884,GO:0042886,GO:0042891,GO:0043167,GO:0043168,GO:0043492,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363	-	ko:K02031,ko:K02032,ko:K13896	ko02010,ko02024,map02010,map02024	M00239,M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5,3.A.1.5.21,3.A.1.5.24	-	-	ABC_tran,oligo_HPY
SX3_k127_5514305_8	1297865.APJD01000011_gene6790	4.725e-256	803.0	COG4239@1|root,COG4239@2|Bacteria,1MUM5@1224|Proteobacteria,2TR1Y@28211|Alphaproteobacteria,3JSKV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	N-terminal TM domain of oligopeptide transport permease C	yejE	GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0035672,GO:0042221,GO:0042493,GO:0042884,GO:0042886,GO:0042891,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944	-	ko:K13895	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	BPD_transp_1,OppC_N
SX3_k127_5514305_9	1297865.APJD01000011_gene6789	7.812e-235	727.0	COG4174@1|root,COG4174@2|Bacteria,1MVKE@1224|Proteobacteria,2TQJD@28211|Alphaproteobacteria,3JRWI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	yejB	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0022857,GO:0035672,GO:0042221,GO:0042493,GO:0042884,GO:0042886,GO:0042891,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944	-	ko:K13894	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	BPD_transp_1
SX3_k127_5514305_3	1297865.APJD01000011_gene6788	0.0	1238.0	COG4166@1|root,COG4166@2|Bacteria,1MUVU@1224|Proteobacteria,2TQJX@28211|Alphaproteobacteria,3JTJ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	yejA	-	-	ko:K13893	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	SBP_bac_5
SX3_k127_5514305_2	1297865.APJD01000011_gene6787	0.0	1333.0	COG4166@1|root,COG4166@2|Bacteria,1MUVU@1224|Proteobacteria,2TQJX@28211|Alphaproteobacteria,3JTQZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	MA20_18500	-	-	ko:K13893	ko02010,map02010	M00349	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5.21,3.A.1.5.24	-	-	SBP_bac_5
SX3_k127_5514305_21	1297865.APJD01000011_gene6786	9.979e-115	370.0	COG3474@1|root,COG3474@2|Bacteria,1RIDN@1224|Proteobacteria,2U142@28211|Alphaproteobacteria,3JQRA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	cyc	-	-	ko:K08738	ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416	M00595	R10151	RC03151,RC03152	ko00000,ko00001,ko00002	3.D.4.6	-	-	Cytochrom_C
SX3_k127_5514305_16	1297865.APJD01000011_gene6785	5.611e-148	470.0	COG1212@1|root,COG1212@2|Bacteria,1MUUU@1224|Proteobacteria,2TUQM@28211|Alphaproteobacteria,3JUY9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria	kdsB	-	2.7.7.38	ko:K00979	ko00540,ko01100,map00540,map01100	M00063	R03351,R11396	RC00152,RC00910	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	CTP_transf_3
SX3_k127_5514305_14	1297865.APJD01000011_gene6784	2.919e-185	580.0	COG0077@1|root,COG0077@2|Bacteria,1MU60@1224|Proteobacteria,2TSUT@28211|Alphaproteobacteria,3JS53@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Prephenate dehydratase	pheA	-	4.2.1.51	ko:K04518	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00024	R00691,R01373	RC00360	ko00000,ko00001,ko00002,ko01000	-	-	-	PDT
SX3_k127_5514305_10	1297865.APJD01000011_gene6783	2.806e-216	672.0	COG2141@1|root,COG2141@2|Bacteria,1MVF0@1224|Proteobacteria,2TTR7@28211|Alphaproteobacteria,3JV9M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_18520	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_5514305_11	1297865.APJD01000011_gene6782	4.295e-201	628.0	COG0685@1|root,COG0685@2|Bacteria,1MUC9@1224|Proteobacteria,2TQZA@28211|Alphaproteobacteria,3JR7B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Methylenetetrahydrofolate reductase	metF	GO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114	1.5.1.20	ko:K00297	ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523	M00377	R01224,R07168	RC00081	ko00000,ko00001,ko00002,ko01000	-	-	-	MTHFR
SX3_k127_5514305_0	1297865.APJD01000011_gene6781	0.0	2559.0	COG0646@1|root,COG1410@1|root,COG0646@2|Bacteria,COG1410@2|Bacteria,1MV6G@1224|Proteobacteria,2TQTG@28211|Alphaproteobacteria,3JUU3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	B12 binding domain	metH	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.1.1.13	ko:K00548	ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230	M00017	R00946,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000	-	-	-	B12-binding,B12-binding_2,Met_synt_B12,Pterin_bind,S-methyl_trans
SX3_k127_5514305_18	1297865.APJD01000011_gene6780	1.679e-141	452.0	COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,2U5B6@28211|Alphaproteobacteria,3JWH3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	-	-	5.2.1.2	ko:K01800	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R03181	RC00867	ko00000,ko00001,ko00002,ko01000	-	-	-	GST_C,GST_C_2,GST_C_3,GST_N_3
SX3_k127_5514305_20	1297865.APJD01000011_gene6779	3.058e-122	392.0	COG3230@1|root,COG3230@2|Bacteria,1MZD9@1224|Proteobacteria,2UERV@28211|Alphaproteobacteria,3JYM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	heme oxygenase	-	-	1.14.99.58	ko:K07215	ko00860,map00860	-	-	-	ko00000,ko00001,ko01000	-	-	-	Heme_oxygenase
SX3_k127_5514305_1	1297865.APJD01000011_gene6778	0.0	1669.0	COG0784@1|root,COG4251@1|root,COG0784@2|Bacteria,COG4251@2|Bacteria,1NC9X@1224|Proteobacteria,2TT77@28211|Alphaproteobacteria,3JVZ7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Phytochrome region	MA20_42395	-	-	-	-	-	-	-	-	-	-	-	GAF,HWE_HK,PAS_2,PAS_3,PHY,Response_reg
SX3_k127_5514305_15	1297865.APJD01000011_gene6777	2.901e-152	481.0	COG2215@1|root,COG2215@2|Bacteria,1QDA1@1224|Proteobacteria,2TUN7@28211|Alphaproteobacteria,3JT8Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the NiCoT transporter (TC 2.A.52) family	-	-	-	ko:K08970	-	-	-	-	ko00000,ko02000	2.A.52.2	-	-	NicO
SX3_k127_552185_4	1297865.APJD01000005_gene3673	1.047e-172	544.0	COG1524@1|root,COG1524@2|Bacteria,1N5SF@1224|Proteobacteria,2TU7V@28211|Alphaproteobacteria,3JXCK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Type I phosphodiesterase / nucleotide pyrophosphatase	phnA	-	3.11.1.2	ko:K19670	ko00440,map00440	-	R00318	RC01309	ko00000,ko00001,ko01000	-	-	-	Phosphodiest
SX3_k127_552185_2	1297865.APJD01000005_gene3672	3.364e-284	873.0	COG2271@1|root,COG2271@2|Bacteria,1MX4V@1224|Proteobacteria,2U6FF@28211|Alphaproteobacteria,3JWSX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	uhpC	-	-	ko:K02445	-	-	-	-	ko00000,ko02000	2.A.1.4.3	-	-	MFS_1
SX3_k127_552185_13	1230476.C207_05619	0.0009726	42.0	2ADM9@1|root,313BY@2|Bacteria,1N686@1224|Proteobacteria,2UF26@28211|Alphaproteobacteria,3K0UJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_552185_11	1297865.APJD01000005_gene3671	1.05e-44	164.0	2ADM9@1|root,313BY@2|Bacteria,1N686@1224|Proteobacteria,2UF26@28211|Alphaproteobacteria,3K0UJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_552185_9	1038859.AXAU01000025_gene4069	1.945e-71	244.0	COG3791@1|root,COG3791@2|Bacteria,1N6S5@1224|Proteobacteria,2UB03@28211|Alphaproteobacteria,3JYB6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	-	-	-	-	-	-	-	-	-	GFA
SX3_k127_552185_3	1297865.APJD01000005_gene3669	8.72e-213	661.0	COG1409@1|root,COG1409@2|Bacteria,1MUQJ@1224|Proteobacteria,2TTSK@28211|Alphaproteobacteria,3JQXS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos
SX3_k127_552185_10	1297865.APJD01000005_gene3668	1.024e-67	230.0	COG3794@1|root,COG3794@2|Bacteria,1RI9G@1224|Proteobacteria,2U7KA@28211|Alphaproteobacteria,3JYXK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Copper binding proteins, plastocyanin/azurin family	-	-	-	-	-	-	-	-	-	-	-	-	Copper-bind,Cupredoxin_1
SX3_k127_552185_7	1297865.APJD01000005_gene3667	2.785e-115	374.0	COG1595@1|root,COG1595@2|Bacteria,1NRNT@1224|Proteobacteria,2TT5K@28211|Alphaproteobacteria,3JTET@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_552185_5	1297865.APJD01000005_gene3666	1.68e-161	513.0	COG5662@1|root,COG5662@2|Bacteria,1MV95@1224|Proteobacteria,2TVRG@28211|Alphaproteobacteria,3JRXS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Putative zinc-finger	-	-	-	-	-	-	-	-	-	-	-	-	zf-HC2
SX3_k127_552185_1	1230476.C207_05614	1.421e-302	928.0	COG4992@1|root,COG4992@2|Bacteria,1R6U9@1224|Proteobacteria,2TUDK@28211|Alphaproteobacteria,3JTSX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	MA20_16020	-	2.6.1.13	ko:K00819	ko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130	-	R00667	RC00006,RC00062	ko00000,ko00001,ko01000,ko01007	-	-	-	Aminotran_3
SX3_k127_552185_6	1297865.APJD01000005_gene3664	1.164e-128	412.0	COG4731@1|root,COG4731@2|Bacteria,1R5BG@1224|Proteobacteria,2TRQI@28211|Alphaproteobacteria,3JY24@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2147)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2147
SX3_k127_552185_12	323097.Nham_3476	0.000945	43.0	COG5567@1|root,COG5567@2|Bacteria,1NEKY@1224|Proteobacteria,2UHV1@28211|Alphaproteobacteria,3K148@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Prokaryotic lipoprotein-attachment site	-	-	-	-	-	-	-	-	-	-	-	-	LPAM_2
SX3_k127_552185_0	1297865.APJD01000005_gene3663	0.0	1605.0	COG4258@1|root,COG4258@2|Bacteria,1QW57@1224|Proteobacteria,2TSFU@28211|Alphaproteobacteria,3JQM0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MMPL family	MA20_16030	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	MMPL
SX3_k127_552185_8	319003.Bra1253DRAFT_02153	5.458e-99	327.0	COG0761@1|root,COG0761@2|Bacteria,1MU7G@1224|Proteobacteria,2TRNR@28211|Alphaproteobacteria,3JS8Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IM	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis	ispH	-	1.17.7.4	ko:K03527	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05884,R08210	RC01137,RC01487	ko00000,ko00001,ko00002,ko01000	-	-	-	LYTB
SX3_k127_5543433_0	1297865.APJD01000018_gene5701	1.358e-232	720.0	COG3659@1|root,COG3659@2|Bacteria,1QMC3@1224|Proteobacteria,2U3KG@28211|Alphaproteobacteria,3JWJ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Carbohydrate-selective porin, OprB family	-	-	-	ko:K07267	-	-	-	-	ko00000,ko02000	1.B.19.1	-	-	OprB
SX3_k127_5543433_4	1297865.APJD01000018_gene5700	5.524e-155	490.0	COG1129@1|root,COG1129@2|Bacteria,1MVNR@1224|Proteobacteria,2TTCM@28211|Alphaproteobacteria,3JUJ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	ATPases associated with a variety of cellular activities	MA20_22170	-	3.6.3.17	ko:K02056	-	M00221	-	-	ko00000,ko00002,ko01000,ko02000	3.A.1.2	-	-	ABC_tran
SX3_k127_5543433_1	1297865.APJD01000018_gene5699	2.521e-220	692.0	COG1172@1|root,COG1172@2|Bacteria,1MX7D@1224|Proteobacteria,2TV15@28211|Alphaproteobacteria,3JUKZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the binding-protein-dependent transport system permease family	MA20_22165	-	-	ko:K10440	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	BPD_transp_2
SX3_k127_5543433_3	1297865.APJD01000018_gene5698	1.29e-191	600.0	COG1879@1|root,COG1879@2|Bacteria,1R6D7@1224|Proteobacteria,2VG0X@28211|Alphaproteobacteria,3JW3P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding protein domain	MA20_22160	-	-	ko:K10439	ko02010,ko02030,map02010,map02030	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	Peripla_BP_4
SX3_k127_5543433_5	1297865.APJD01000018_gene5697	3.003e-109	355.0	COG1595@1|root,COG1595@2|Bacteria,1RHYH@1224|Proteobacteria,2UA7M@28211|Alphaproteobacteria,3JXUF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	ECF sigma factor	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_5543433_6	224911.27348412	0.0008684	44.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5543433_2	1297865.APJD01000018_gene5696	5.245e-197	614.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,3K3NX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	haemagglutination activity domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF3739,Haemagg_act
SX3_k127_5544181_0	1297865.APJD01000006_gene4408	0.0	1889.0	COG0166@1|root,COG0176@1|root,COG0166@2|Bacteria,COG0176@2|Bacteria,1MUFP@1224|Proteobacteria,2TQKP@28211|Alphaproteobacteria,3JR2T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway	tal	-	2.2.1.2,5.3.1.9	ko:K01810,ko:K13810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00004,M00007,M00114	R01827,R02739,R02740,R03321	RC00376,RC00439,RC00563,RC00604	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	PGI,TAL_FSA
SX3_k127_5544181_2	1297865.APJD01000006_gene4407	1.162e-214	676.0	COG1023@1|root,COG1023@2|Bacteria,1QU14@1224|Proteobacteria,2TT6S@28211|Alphaproteobacteria,3JUS2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	6-phosphogluconate dehydrogenase	gnd	-	1.1.1.343,1.1.1.44	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	M00004,M00006	R01528,R10221	RC00001,RC00539	ko00000,ko00001,ko00002,ko01000	-	-	-	6PGD,NAD_binding_2
SX3_k127_5544181_1	1297865.APJD01000006_gene4406	0.0	1023.0	COG0364@1|root,COG0364@2|Bacteria,1MUN0@1224|Proteobacteria,2TQXA@28211|Alphaproteobacteria,3JTX7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone	zwf	-	1.1.1.363,1.1.1.49	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	M00004,M00006,M00008	R00835,R02736,R10907	RC00001,RC00066	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	G6PD_C,G6PD_N
SX3_k127_5544181_3	1297865.APJD01000006_gene4405	2.695e-162	511.0	COG0363@1|root,COG0363@2|Bacteria,1R5K6@1224|Proteobacteria,2U77K@28211|Alphaproteobacteria,3JSU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	pgl	-	2.7.1.12,3.1.1.31	ko:K00851,ko:K01057	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	M00004,M00006,M00008	R01737,R02035	RC00002,RC00017,RC00537	ko00000,ko00001,ko00002,ko01000	-	-	-	Glucosamine_iso
SX3_k127_5544181_4	1297865.APJD01000006_gene4404	9.131e-103	335.0	COG3265@1|root,COG3265@2|Bacteria,1RHD0@1224|Proteobacteria,2UBQX@28211|Alphaproteobacteria,3JUIV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Shikimate kinase	-	-	2.7.1.12	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	-	R01737	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	AAA_33,SKI
SX3_k127_5544181_5	1297865.APJD01000006_gene4403	9.827e-49	184.0	COG0561@1|root,COG0561@2|Bacteria,1MXIH@1224|Proteobacteria,2TTNZ@28211|Alphaproteobacteria,3JQTP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sucrose-6F-phosphate phosphohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_3
SX3_k127_5551643_3	1297865.APJD01000032_gene1624	3.991e-161	509.0	COG1024@1|root,COG1024@2|Bacteria,1MXEN@1224|Proteobacteria,2TTIH@28211|Alphaproteobacteria,3JS74@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_5551643_4	1297865.APJD01000032_gene1623	2.488e-134	429.0	COG1309@1|root,COG1309@2|Bacteria,1MU8U@1224|Proteobacteria,2TTBT@28211|Alphaproteobacteria,3K6D8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_5551643_2	1230476.C207_06124	6.822e-208	653.0	COG1876@1|root,COG1876@2|Bacteria,1N6GV@1224|Proteobacteria,2TV98@28211|Alphaproteobacteria,3JRSY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	peptidase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5551643_5	1297865.APJD01000032_gene1621	5.419e-134	432.0	COG0637@1|root,COG0637@2|Bacteria,1PUMZ@1224|Proteobacteria,2VEVZ@28211|Alphaproteobacteria,3K6DZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HAD-hyrolase-like	-	-	-	-	-	-	-	-	-	-	-	-	HAD_2
SX3_k127_5551643_6	1038859.AXAU01000023_gene904	3.366e-20	101.0	2AEKQ@1|root,305CB@2|Bacteria,1NN51@1224|Proteobacteria,2UN6N@28211|Alphaproteobacteria,3K27K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5551643_0	1297865.APJD01000032_gene1620	0.0	1028.0	COG5267@1|root,COG5267@2|Bacteria,1MWJK@1224|Proteobacteria,2TSY7@28211|Alphaproteobacteria,3JT47@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1800)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1800
SX3_k127_5551643_1	1297865.APJD01000032_gene1619	2.752e-264	816.0	COG4102@1|root,COG4102@2|Bacteria,1MX4R@1224|Proteobacteria,2TSFB@28211|Alphaproteobacteria,3JRCB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1501)	MA20_05265	-	-	-	-	-	-	-	-	-	-	-	DUF1501
SX3_k127_5553337_10	1297865.APJD01000019_gene3278	3.993e-113	368.0	COG4133@1|root,COG4133@2|Bacteria,1MZPC@1224|Proteobacteria,2TVBT@28211|Alphaproteobacteria,3JR9H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system	ccmA	-	3.6.3.41	ko:K02193	ko02010,map02010	M00259	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.107	-	-	ABC_tran
SX3_k127_5553337_0	1297865.APJD01000019_gene3279	0.0	1843.0	COG1048@1|root,COG1048@2|Bacteria,1MU9T@1224|Proteobacteria,2TT3T@28211|Alphaproteobacteria,3JQVB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate	acnA	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003994,GO:0005488,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0045333,GO:0046459,GO:0047456,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0072350,GO:0097159,GO:1901363	4.2.1.3	ko:K01681	ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00173,M00740	R01324,R01325,R01900	RC00497,RC00498,RC00618	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase,Aconitase_C
SX3_k127_5553337_5	1297865.APJD01000019_gene3280	2.029e-161	510.0	COG5429@1|root,COG5429@2|Bacteria,1MW6R@1224|Proteobacteria,2U33F@28211|Alphaproteobacteria,3JVYD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1223)	MA20_43790	-	-	-	-	-	-	-	-	-	-	-	DUF1223
SX3_k127_5553337_11	172088.AUGA01000018_gene2189	1.295e-69	237.0	2CCMQ@1|root,32RW3@2|Bacteria,1MZHB@1224|Proteobacteria,2UCC9@28211|Alphaproteobacteria,3JYQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2794)	MA20_43795	-	-	-	-	-	-	-	-	-	-	-	DUF2794
SX3_k127_5553337_6	1297865.APJD01000019_gene3282	4.862e-157	497.0	COG0670@1|root,COG0670@2|Bacteria,1MU69@1224|Proteobacteria,2TRSF@28211|Alphaproteobacteria,3JSSN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the BI1 family	ybhL	-	-	ko:K06890	-	-	-	-	ko00000	-	-	-	Bax1-I
SX3_k127_5553337_1	1297865.APJD01000019_gene3283	0.0	1631.0	COG3127@1|root,COG3127@2|Bacteria,1MU9R@1224|Proteobacteria,2TS8V@28211|Alphaproteobacteria,3JUPK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	FtsX-like permease family	MA20_43810	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
SX3_k127_5553337_7	1297865.APJD01000019_gene3284	4.652e-144	466.0	COG4181@1|root,COG4181@2|Bacteria,1MXG9@1224|Proteobacteria,2TS0J@28211|Alphaproteobacteria,3JS8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	ABC transporter	ybbA	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
SX3_k127_5553337_8	1297865.APJD01000019_gene3285	4.109e-128	413.0	COG2755@1|root,COG2755@2|Bacteria,1RCXZ@1224|Proteobacteria,2U74E@28211|Alphaproteobacteria,3JQRR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GDSL-like Lipase/Acylhydrolase	tesA	-	3.1.1.5	ko:K10804	ko01040,map01040	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	Lipase_GDSL_2
SX3_k127_5553337_9	1297865.APJD01000019_gene3286	8.529e-114	369.0	COG1514@1|root,COG1514@2|Bacteria,1RDB2@1224|Proteobacteria,2U7FV@28211|Alphaproteobacteria,3JTFI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester	ligT	-	3.1.4.58	ko:K01975	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	LigT_PEase
SX3_k127_5553337_2	1297865.APJD01000019_gene3287	4.475e-258	796.0	COG1485@1|root,COG1485@2|Bacteria,1MUUW@1224|Proteobacteria,2TRG1@28211|Alphaproteobacteria,3JRCC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AFG1-like ATPase	zapE	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0030163,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0035694,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071840,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575	-	ko:K06916	-	-	-	-	ko00000,ko03036	-	-	-	AFG1_ATPase
SX3_k127_5553337_3	1230476.C207_04668	1.94e-207	645.0	COG0039@1|root,COG0039@2|Bacteria,1MV57@1224|Proteobacteria,2TSV6@28211|Alphaproteobacteria,3JRQU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Catalyzes the reversible oxidation of malate to oxaloacetate	mdh	GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019752,GO:0030060,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	1.1.1.37	ko:K00024	ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00012,M00168,M00173,M00346,M00374,M00620,M00740	R00342,R07136	RC00031	ko00000,ko00001,ko00002,ko01000	-	-	-	Ldh_1_C,Ldh_1_N
SX3_k127_5553337_4	1297865.APJD01000019_gene3289	4.978e-184	576.0	COG0045@1|root,COG0045@2|Bacteria,1MVCE@1224|Proteobacteria,2TRXK@28211|Alphaproteobacteria,3JRMM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit	sucC	GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	6.2.1.5	ko:K01903	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp_2,Ligase_CoA
SX3_k127_5561907_16	1297865.APJD01000014_gene552	9.806e-120	384.0	COG1653@1|root,COG1653@2|Bacteria,1MU64@1224|Proteobacteria,2TTUB@28211|Alphaproteobacteria,3JSQS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	-	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_8,TAT_signal
SX3_k127_5561907_11	1230476.C207_06515	1.73e-204	636.0	COG1175@1|root,COG1175@2|Bacteria,1MWB7@1224|Proteobacteria,2TUAN@28211|Alphaproteobacteria,3JS7K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02025	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_5561907_13	1297865.APJD01000014_gene550	2e-185	582.0	COG0395@1|root,COG0395@2|Bacteria,1N4I0@1224|Proteobacteria,2TT14@28211|Alphaproteobacteria,3JR2J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_5561907_10	1297865.APJD01000014_gene549	6.268e-213	663.0	COG0451@1|root,COG0451@2|Bacteria,1MU1A@1224|Proteobacteria,2TU1A@28211|Alphaproteobacteria,3JUUT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	3-beta hydroxysteroid dehydrogenase/isomerase family	MA20_27225	-	1.1.1.410	ko:K22025	-	-	-	-	ko00000,ko01000	-	-	-	Epimerase
SX3_k127_5561907_12	1297865.APJD01000014_gene548	1.78e-196	623.0	COG0524@1|root,COG0524@2|Bacteria,1MVG2@1224|Proteobacteria,2TSDV@28211|Alphaproteobacteria,3JTDI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	pfkB family carbohydrate kinase	kdgK	-	2.7.1.45	ko:K00874	ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200	M00061,M00308,M00631	R01541	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	PfkB
SX3_k127_5561907_15	1297865.APJD01000014_gene547	7.282e-124	409.0	COG0800@1|root,COG0800@2|Bacteria,1MUVJ@1224|Proteobacteria,2TUMH@28211|Alphaproteobacteria,3JSEV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	KDPG and KHG aldolase	MA20_27235	-	4.1.2.14,4.1.3.42	ko:K01625	ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200	M00008,M00061,M00308,M00631	R00470,R05605	RC00307,RC00308,RC00435	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldolase
SX3_k127_5561907_8	1297865.APJD01000014_gene546	6.578e-255	786.0	COG0183@1|root,COG0183@2|Bacteria,1MU8C@1224|Proteobacteria,2TS6P@28211|Alphaproteobacteria,3JT7E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_27240	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_5561907_2	1297865.APJD01000014_gene545	0.0	1063.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JR7R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_5561907_21	1297865.APJD01000014_gene544	7.774e-30	119.0	29G04@1|root,302XX@2|Bacteria,1N9KT@1224|Proteobacteria,2UHEY@28211|Alphaproteobacteria,3K1DV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_27245	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5561907_4	1297865.APJD01000014_gene543	4.073e-267	822.0	COG1804@1|root,COG1804@2|Bacteria,1MVY1@1224|Proteobacteria,2TVJ9@28211|Alphaproteobacteria,3JSQ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_27250	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_5561907_5	1297865.APJD01000014_gene542	6.48e-261	805.0	COG1960@1|root,COG1960@2|Bacteria,1MVAH@1224|Proteobacteria,2TR02@28211|Alphaproteobacteria,3JR2G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_5561907_23	1037409.BJ6T_67400	2.578e-05	47.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,3JUU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337,ko:K14162	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_5561907_9	1297865.APJD01000014_gene541	2.503e-243	752.0	COG0183@1|root,COG0183@2|Bacteria,1MUZV@1224|Proteobacteria,2TRHF@28211|Alphaproteobacteria,3JTMF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Thiolase, N-terminal domain	MA20_27255	-	-	-	-	-	-	-	-	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_5561907_18	1297865.APJD01000014_gene540	5.632e-72	248.0	COG1545@1|root,COG1545@2|Bacteria,1RDFZ@1224|Proteobacteria,2U8BV@28211|Alphaproteobacteria,3JYUU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DUF35 OB-fold domain, acyl-CoA-associated	-	-	-	-	-	-	-	-	-	-	-	-	DUF35_N,OB_aCoA_assoc
SX3_k127_5561907_17	1297865.APJD01000014_gene538	2.83e-109	353.0	COG2128@1|root,COG2128@2|Bacteria,1MVWP@1224|Proteobacteria,2TV9H@28211|Alphaproteobacteria,3JUJK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carboxymuconolactone decarboxylase family	MA20_27265	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_5561907_1	1297865.APJD01000014_gene537	0.0	1232.0	COG2066@1|root,COG2905@1|root,COG2066@2|Bacteria,COG2905@2|Bacteria,1MWB5@1224|Proteobacteria,2TS8X@28211|Alphaproteobacteria,3JSD9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	glutaminase activity	glsA	GO:0003674,GO:0003824,GO:0004359,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607	3.5.1.2	ko:K01425	ko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230	-	R00256,R01579	RC00010,RC02798	ko00000,ko00001,ko01000	-	-	-	Glutaminase,STAS,cNMP_binding
SX3_k127_5561907_0	1297865.APJD01000014_gene536	0.0	1351.0	COG4666@1|root,COG4666@2|Bacteria,1MUNB@1224|Proteobacteria,2TQY9@28211|Alphaproteobacteria,3JT1C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite ATP-independent periplasmic transporter, DctM component	MA20_27280	-	-	-	-	-	-	-	-	-	-	-	DctM
SX3_k127_5561907_6	1297865.APJD01000014_gene535	2.549e-256	792.0	COG2358@1|root,COG2358@2|Bacteria,1R3ZR@1224|Proteobacteria,2TSND@28211|Alphaproteobacteria,3JV59@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NMT1-like family	MA20_27285	-	-	-	-	-	-	-	-	-	-	-	NMT1_3
SX3_k127_5561907_20	1297865.APJD01000014_gene534	6.74e-36	137.0	COG1038@1|root,COG1038@2|Bacteria,1NB5C@1224|Proteobacteria,2UF40@28211|Alphaproteobacteria,3K02Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Biotin-requiring enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Biotin_lipoyl
SX3_k127_5561907_14	316058.RPB_2112	3.63e-125	409.0	COG1414@1|root,COG1414@2|Bacteria,1NUU3@1224|Proteobacteria,2U11F@28211|Alphaproteobacteria,3JU6R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix isocitrate lyase regulation	MA20_27295	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR,IclR
SX3_k127_5561907_3	1297865.APJD01000014_gene532	0.0	1052.0	COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2TTB9@28211|Alphaproteobacteria,3JU33@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Carboxyl transferase domain	MA20_27300	-	2.1.3.15,6.4.1.3	ko:K01966	ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200	M00373,M00741	R01859	RC00097,RC00609	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
SX3_k127_5561907_7	1230476.C207_06497	2.566e-256	790.0	COG1752@1|root,COG1752@2|Bacteria,1MVHW@1224|Proteobacteria,2TS4V@28211|Alphaproteobacteria,3JW2T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Patatin phospholipase	-	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	DUF3734,Patatin
SX3_k127_5561907_19	398525.KB900701_gene4355	1.643e-55	194.0	COG4689@1|root,COG4689@2|Bacteria,1N4IP@1224|Proteobacteria,2TTZX@28211|Alphaproteobacteria,3JRAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Catalyzes the conversion of acetoacetate to acetone and carbon dioxide	adc	-	4.1.1.4	ko:K01574	ko00072,ko00640,ko01100,map00072,map00640,map01100	M00088	R01366	RC00040	ko00000,ko00001,ko00002,ko01000	-	-	-	ADC
SX3_k127_5567497_5	1297865.APJD01000006_gene4574	0.0	997.0	COG0206@1|root,COG0206@2|Bacteria,1MV2X@1224|Proteobacteria,2TS1Q@28211|Alphaproteobacteria,3JTNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity	ftsZ	-	-	ko:K03531	ko04112,map04112	-	-	-	ko00000,ko00001,ko02048,ko03036,ko04812	-	-	-	FtsZ_C,Tubulin
SX3_k127_5567497_7	1230476.C207_03430	1.749e-197	617.0	COG0774@1|root,COG0774@2|Bacteria,1MV6T@1224|Proteobacteria,2TUHH@28211|Alphaproteobacteria,3JRM4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis	lpxC	-	3.5.1.108	ko:K02535	ko00540,ko01100,map00540,map01100	M00060	R04587	RC00166,RC00300	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	LpxC
SX3_k127_5567497_8	1297865.APJD01000006_gene4576	3.565e-193	603.0	COG4105@1|root,COG4105@2|Bacteria,1MVS5@1224|Proteobacteria,2TRZ5@28211|Alphaproteobacteria,3JT3Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	bamD	-	-	ko:K05807	-	-	-	-	ko00000,ko02000	1.B.33.1	-	-	YfiO
SX3_k127_5567497_4	1297865.APJD01000006_gene4577	0.0	1028.0	COG0497@1|root,COG0497@2|Bacteria,1MUNP@1224|Proteobacteria,2TREW@28211|Alphaproteobacteria,3JUU4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	May be involved in recombinational repair of damaged DNA	recN	-	-	ko:K03631	-	-	-	-	ko00000,ko03400	-	-	-	SMC_N
SX3_k127_5567497_1	1297865.APJD01000006_gene4578	0.0	1431.0	COG0272@1|root,COG0272@2|Bacteria,1MV3R@1224|Proteobacteria,2TRHK@28211|Alphaproteobacteria,3JVTG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	ligA	GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360	6.5.1.2	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	-	R00382	RC00005	ko00000,ko00001,ko01000,ko03032,ko03400	-	-	-	BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2
SX3_k127_5567497_6	1297865.APJD01000006_gene4579	5.539e-263	811.0	COG0477@1|root,COG2814@2|Bacteria,1MW19@1224|Proteobacteria,2TRQD@28211|Alphaproteobacteria,3JSD8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	drug resistance transporter, Bcr CflA	MA20_01870	-	-	ko:K07552	-	-	-	-	ko00000,ko02000	2.A.1.2	-	-	MFS_1
SX3_k127_5567497_2	1297865.APJD01000006_gene4580	0.0	1226.0	COG0006@1|root,COG0006@2|Bacteria,1MUZS@1224|Proteobacteria,2TQXN@28211|Alphaproteobacteria,3JT5N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Creatinase/Prolidase N-terminal domain	pepP	-	3.4.11.9	ko:K01262	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Creatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C
SX3_k127_5567497_15	1297865.APJD01000006_gene4581	1.973e-30	123.0	2AEA5@1|root,3144C@2|Bacteria,1N943@1224|Proteobacteria,2UI3X@28211|Alphaproteobacteria,3K11M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5567497_13	1297865.APJD01000006_gene4582	7.475e-111	365.0	COG0727@1|root,COG0727@2|Bacteria,1RJ0V@1224|Proteobacteria,2U8AG@28211|Alphaproteobacteria,3JYN2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PFAM Uncharacterised protein family (UPF0153)	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5567497_9	1297865.APJD01000006_gene4583	8.962e-178	558.0	COG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,2TTP3@28211|Alphaproteobacteria,3JR3H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Ribosomal protein L11 methyltransferase	prmA	-	-	ko:K02687	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	PrmA
SX3_k127_5567497_17	1297865.APJD01000006_gene4584	5.095e-17	81.0	COG3847@1|root,COG3847@2|Bacteria	2|Bacteria	U	Flp Fap pilin component	flp1	-	-	ko:K02651	ko04112,map04112	-	-	-	ko00000,ko00001,ko02035,ko02044	-	-	-	Flp_Fap
SX3_k127_5567497_3	1297865.APJD01000006_gene4585	0.0	1077.0	COG1233@1|root,COG1233@2|Bacteria,1MV2R@1224|Proteobacteria,2TSR0@28211|Alphaproteobacteria,3JUVV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Flavin containing amine oxidoreductase	MA20_01895	-	-	-	-	-	-	-	-	-	-	-	Amino_oxidase
SX3_k127_5567497_0	1297865.APJD01000006_gene4586	0.0	1519.0	COG0421@1|root,COG0421@2|Bacteria,1N1PJ@1224|Proteobacteria,2TUJQ@28211|Alphaproteobacteria,3JSDN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	MA20_01900	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5567497_16	1051985.l11_06560	1.952e-21	104.0	COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2VHBS@28216|Betaproteobacteria,2KQNX@206351|Neisseriales	206351|Neisseriales	M	Peptidase, M23 family	-	-	-	-	-	-	-	-	-	-	-	-	OapA,Peptidase_M23
SX3_k127_5567497_11	1297865.APJD01000006_gene4587	1.212e-119	386.0	COG1309@1|root,COG1309@2|Bacteria,1QIJW@1224|Proteobacteria,2TWD8@28211|Alphaproteobacteria,3JSKH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	ko:K16137	-	-	-	-	ko00000,ko03000	-	-	-	TENA_THI-4,TetR_C_13,TetR_N
SX3_k127_5567497_12	1297865.APJD01000006_gene4588	3.702e-112	362.0	2CI0R@1|root,2ZBW7@2|Bacteria,1RCTA@1224|Proteobacteria,2TV1Z@28211|Alphaproteobacteria,3JRPU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF308
SX3_k127_5567497_10	1297865.APJD01000006_gene4589	3.329e-173	547.0	COG4188@1|root,COG4188@2|Bacteria,1R3QC@1224|Proteobacteria,2U2ZH@28211|Alphaproteobacteria,3JW2Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Platelet-activating factor acetylhydrolase, isoform II	-	-	-	-	-	-	-	-	-	-	-	-	Chlorophyllase2
SX3_k127_5567497_14	1297865.APJD01000006_gene4590	6.951e-90	299.0	2DBU1@1|root,2ZB3C@2|Bacteria,1NB4B@1224|Proteobacteria,2U0ZG@28211|Alphaproteobacteria,3JV6M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5572004_14	1297865.APJD01000005_gene3964	3.533e-95	315.0	COG1545@1|root,COG1545@2|Bacteria,1REY1@1224|Proteobacteria,2U8AE@28211|Alphaproteobacteria,3JYU2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Rubredoxin-like zinc ribbon domain (DUF35_N)	-	-	-	-	-	-	-	-	-	-	-	-	DUF35_N,OB_aCoA_assoc
SX3_k127_5572004_8	1297865.APJD01000005_gene3963	3.327e-250	774.0	COG0183@1|root,COG0183@2|Bacteria,1MUZV@1224|Proteobacteria,2U3MA@28211|Alphaproteobacteria,3JWU0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acetyl-coa acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5572004_4	1297865.APJD01000005_gene3962	7.573e-283	870.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,3JS9F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_5572004_7	1297865.APJD01000005_gene3961	9.756e-256	793.0	COG0683@1|root,COG0683@2|Bacteria,1R5JZ@1224|Proteobacteria,2TU8V@28211|Alphaproteobacteria,3JWFM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_5572004_10	1297865.APJD01000005_gene3960	4.068e-204	659.0	COG1018@1|root,COG1018@2|Bacteria,1MU6E@1224|Proteobacteria,2TRE9@28211|Alphaproteobacteria,3JSXZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	2Fe-2S iron-sulfur cluster binding domain	vanB	-	1.1.1.404	ko:K21607	ko00361,ko01100,ko01120,map00361,map01100,map01120	-	R11585	-	ko00000,ko00001,ko01000	-	-	-	FAD_binding_6,Fer2,NAD_binding_1
SX3_k127_5572004_3	1297865.APJD01000005_gene3959	2.456e-308	943.0	COG4638@1|root,COG4638@2|Bacteria,1MX47@1224|Proteobacteria,2TV03@28211|Alphaproteobacteria,3JTQC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske [2Fe-2S] domain	-	-	-	-	-	-	-	-	-	-	-	-	Rieske
SX3_k127_5572004_15	1297865.APJD01000005_gene3958	1.944e-62	218.0	2EPVM@1|root,33HG4@2|Bacteria,1N07M@1224|Proteobacteria,2UBF0@28211|Alphaproteobacteria,3K0R1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5572004_13	1297865.APJD01000005_gene3957	1.807e-98	322.0	COG1846@1|root,COG1846@2|Bacteria,1R4QV@1224|Proteobacteria,2U0C8@28211|Alphaproteobacteria,3JVAU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	ko:K22296	-	-	-	-	ko00000,ko03000	-	-	-	MarR,MarR_2
SX3_k127_5572004_6	1297865.APJD01000005_gene3956	3.511e-259	799.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TRB6@28211|Alphaproteobacteria,3JU7I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_5572004_0	1297865.APJD01000005_gene3955	0.0	1497.0	COG1960@1|root,COG1960@2|Bacteria,1R6EH@1224|Proteobacteria,2U2J9@28211|Alphaproteobacteria,3JW67@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_5572004_11	398525.KB900701_gene4180	1.075e-167	528.0	COG1024@1|root,COG1024@2|Bacteria,1Q51H@1224|Proteobacteria,2TUPH@28211|Alphaproteobacteria,3JRRW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_5572004_12	1297865.APJD01000005_gene3953	4.374e-165	543.0	COG2186@1|root,COG2186@2|Bacteria,1QCHK@1224|Proteobacteria,2U9QK@28211|Alphaproteobacteria,3JR8C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	ko:K05799	-	-	-	-	ko00000,ko03000	-	-	-	FCD,GntR
SX3_k127_5572004_9	1297865.APJD01000005_gene3952	1.168e-246	763.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TQKE@28211|Alphaproteobacteria,3JRFI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_5572004_5	1297865.APJD01000005_gene3951	3.756e-262	810.0	COG0683@1|root,COG0683@2|Bacteria,1R4YP@1224|Proteobacteria,2U1BZ@28211|Alphaproteobacteria,3JSVX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_5572004_1	1297865.APJD01000005_gene3950	0.0	1150.0	COG2987@1|root,COG2987@2|Bacteria,1MU4W@1224|Proteobacteria,2TSJR@28211|Alphaproteobacteria,3JRYI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate	hutU	-	4.2.1.49	ko:K01712	ko00340,ko01100,map00340,map01100	M00045	R02914	RC00804	ko00000,ko00001,ko00002,ko01000	-	-	-	Urocanase,Urocanase_C,Urocanase_N
SX3_k127_5572004_2	1297865.APJD01000005_gene3949	1.042e-321	990.0	COG2986@1|root,COG2986@2|Bacteria,1MU6K@1224|Proteobacteria,2TSPJ@28211|Alphaproteobacteria,3JRHS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	histidine ammonia-lyase activity	hutH	-	4.3.1.3	ko:K01745	ko00340,ko01100,map00340,map01100	M00045	R01168	RC00361	ko00000,ko00001,ko00002,ko01000	-	-	-	Lyase_aromatic
SX3_k127_5572004_16	1297865.APJD01000005_gene3948	6.834e-40	147.0	COG1228@1|root,COG1228@2|Bacteria,1MUYR@1224|Proteobacteria,2TSA1@28211|Alphaproteobacteria,3JVJX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	imidazolonepropionase activity	hutI	-	3.5.2.7	ko:K01468	ko00340,ko01100,map00340,map01100	M00045	R02288	RC00683	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
SX3_k127_5581279_25	1304878.AUGD01000021_gene3777	6.062e-31	121.0	COG5489@1|root,COG5489@2|Bacteria,1RDVU@1224|Proteobacteria,2U98G@28211|Alphaproteobacteria,3JZBX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_5581279_15	1304878.AUGD01000021_gene3778	1.436e-197	616.0	COG1633@1|root,COG1633@2|Bacteria,1MUET@1224|Proteobacteria,2TQMZ@28211|Alphaproteobacteria,3JR4J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Rubrerythrin	-	-	-	-	-	-	-	-	-	-	-	-	Rubrerythrin
SX3_k127_5581279_13	1304878.AUGD01000021_gene3779	2.793e-237	740.0	COG1914@1|root,COG1914@2|Bacteria,1MW6X@1224|Proteobacteria,2TUTC@28211|Alphaproteobacteria,3JX8F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Natural resistance-associated macrophage protein	mntH	-	-	ko:K03322	-	-	-	-	ko00000,ko02000	2.A.55.2.6,2.A.55.3	-	-	Nramp
SX3_k127_5581279_27	1304878.AUGD01000021_gene3767	6.911e-25	108.0	COG1814@1|root,COG1814@2|Bacteria,1MUZE@1224|Proteobacteria,2TT6M@28211|Alphaproteobacteria,3JRM0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	VIT family	-	-	-	-	-	-	-	-	-	-	-	-	VIT1
SX3_k127_5581279_28	78245.Xaut_4572	1.164e-10	64.0	COG1961@1|root,COG1961@2|Bacteria,1MV0C@1224|Proteobacteria,2TTJT@28211|Alphaproteobacteria,3EZQD@335928|Xanthobacteraceae	28211|Alphaproteobacteria	L	PFAM Resolvase domain	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
SX3_k127_5581279_5	1297865.APJD01000039_gene1685	6.048e-317	976.0	COG0433@1|root,COG0433@2|Bacteria,1MVA9@1224|Proteobacteria,2TTKA@28211|Alphaproteobacteria,3JU4E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function DUF87	MA20_00215	-	-	ko:K06915	-	-	-	-	ko00000	-	-	-	DUF87
SX3_k127_5581279_17	1297865.APJD01000039_gene1686	3.045e-173	543.0	COG2771@1|root,COG2771@2|Bacteria,1QWEA@1224|Proteobacteria,2UYRE@28211|Alphaproteobacteria,3K2F2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Autoinducer binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Autoind_bind,GerE
SX3_k127_5581279_7	1297865.APJD01000039_gene1687	3.331e-267	826.0	COG0683@1|root,COG0683@2|Bacteria	2|Bacteria	E	ABC-type branched-chain amino acid transport systems, periplasmic component	MA20_10005	-	-	-	-	-	-	-	-	-	-	-	NMT1_3,Peripla_BP_6
SX3_k127_5581279_10	1297865.APJD01000039_gene1688	5.649e-252	778.0	COG0183@1|root,COG0183@2|Bacteria,1MUZV@1224|Proteobacteria,2TRHF@28211|Alphaproteobacteria,3K3E4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Thiolase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5581279_23	1297865.APJD01000039_gene1689	1.596e-84	300.0	COG1545@1|root,COG1545@2|Bacteria,1N7HH@1224|Proteobacteria,2UFFB@28211|Alphaproteobacteria,3K47F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Rubredoxin-like zinc ribbon domain (DUF35_N)	-	-	-	-	-	-	-	-	-	-	-	-	DUF35_N,OB_aCoA_assoc
SX3_k127_5581279_19	1297865.APJD01000039_gene1690	7.53e-150	476.0	COG1024@1|root,COG1024@2|Bacteria,1R3Q4@1224|Proteobacteria,2U3E5@28211|Alphaproteobacteria	28211|Alphaproteobacteria	I	Belongs to the enoyl-CoA hydratase isomerase family	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_5581279_12	1297865.APJD01000039_gene1691	5.165e-241	746.0	COG1804@1|root,COG1804@2|Bacteria,1MVY1@1224|Proteobacteria,2TVJ9@28211|Alphaproteobacteria,3JQZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_5581279_1	1297865.APJD01000039_gene1692	0.0	1349.0	2E9GM@1|root,333PR@2|Bacteria,1R3BE@1224|Proteobacteria,2U1T8@28211|Alphaproteobacteria,3JUN1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5581279_0	1297865.APJD01000039_gene1693	0.0	1391.0	COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2TVX5@28211|Alphaproteobacteria,3K6QH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_5581279_11	1297865.APJD01000039_gene1694	4.245e-247	763.0	COG3182@1|root,COG3182@2|Bacteria,1MW2S@1224|Proteobacteria,2TSFC@28211|Alphaproteobacteria,3JW59@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PepSY-associated TM region	-	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
SX3_k127_5581279_26	1297865.APJD01000039_gene1695	2.275e-29	121.0	2ESW1@1|root,33KEE@2|Bacteria,1NH81@1224|Proteobacteria,2UK73@28211|Alphaproteobacteria,3K1WB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5581279_22	1297865.APJD01000039_gene1696	1.07e-84	281.0	COG1733@1|root,COG1733@2|Bacteria	2|Bacteria	K	regulation of RNA biosynthetic process	hxlR	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_5581279_24	1297865.APJD01000039_gene1697	6.33e-80	268.0	2FH03@1|root,348V5@2|Bacteria,1NZ7F@1224|Proteobacteria,2UTTX@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5581279_3	1297865.APJD01000039_gene1698	0.0	1135.0	COG1574@1|root,COG1574@2|Bacteria,1MWP2@1224|Proteobacteria,2TTRU@28211|Alphaproteobacteria,3K68D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_3
SX3_k127_5581279_8	1297865.APJD01000039_gene1699	3.608e-255	788.0	COG4645@1|root,COG4645@2|Bacteria,1PI9Q@1224|Proteobacteria,2U1C7@28211|Alphaproteobacteria,3JWHA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	OpgC protein	-	-	-	-	-	-	-	-	-	-	-	-	OpgC_C
SX3_k127_5581279_20	1297865.APJD01000039_gene1700	9.902e-130	416.0	COG1309@1|root,COG1309@2|Bacteria,1R9CY@1224|Proteobacteria,2U528@28211|Alphaproteobacteria,3JXSB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_4,TetR_N
SX3_k127_5581279_9	1297865.APJD01000039_gene1701	1.058e-253	782.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TQKE@28211|Alphaproteobacteria,3JVW0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	ko:K06446	ko00930,ko01100,ko01120,map00930,map01100,map01120	-	R06943	RC00052	ko00000,ko00001,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_5581279_2	1297865.APJD01000039_gene1702	0.0	1144.0	COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2TR96@28211|Alphaproteobacteria,3K2C0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.48	ko:K02182	-	-	-	-	ko00000,ko01000	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_5581279_14	1297865.APJD01000039_gene1703	1.06e-206	650.0	COG0252@1|root,COG0252@2|Bacteria,1MWIR@1224|Proteobacteria,2U1B3@28211|Alphaproteobacteria,3JT6S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EJ	Asparaginase	ansB	-	3.5.1.1,3.5.1.38	ko:K01424,ko:K05597	ko00220,ko00250,ko00460,ko00471,ko01100,ko01110,ko02020,map00220,map00250,map00460,map00471,map01100,map01110,map02020	-	R00256,R00485,R01579	RC00010,RC02798	ko00000,ko00001,ko01000	-	-	-	Asparaginase
SX3_k127_5581279_6	1297865.APJD01000039_gene1704	5.367e-315	966.0	COG1070@1|root,COG1070@2|Bacteria,1MW4A@1224|Proteobacteria,2TR7P@28211|Alphaproteobacteria,3JRNR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	FGGY family of carbohydrate kinases, N-terminal domain	xylB	GO:0003674,GO:0003824,GO:0004856,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0019323,GO:0042732,GO:0042843,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046365,GO:0046835,GO:0071704,GO:1901575	2.7.1.17	ko:K00854	ko00040,ko01100,map00040,map01100	M00014	R01639	RC00002,RC00538	ko00000,ko00001,ko00002,ko01000	-	-	-	FGGY_C,FGGY_N
SX3_k127_5581279_21	1297865.APJD01000039_gene1705	6.438e-93	311.0	COG0625@1|root,COG0625@2|Bacteria,1MY47@1224|Proteobacteria,2TVGA@28211|Alphaproteobacteria,3JR7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	gst	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_C_3,GST_N,GST_N_3
SX3_k127_5581279_4	1297865.APJD01000039_gene1706	0.0	1045.0	COG1129@1|root,COG1129@2|Bacteria,1MU22@1224|Proteobacteria,2TQJV@28211|Alphaproteobacteria,3JQYV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	ABC transporter	MA20_14260	-	3.6.3.17	ko:K10441	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	ABC_tran
SX3_k127_5581279_16	1037409.BJ6T_64320	6.217e-177	560.0	COG4158@1|root,COG4158@2|Bacteria,1QTW4@1224|Proteobacteria,2TWS8@28211|Alphaproteobacteria,3JV3D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Branched-chain amino acid transport system / permease component	MA20_14255	-	-	ko:K10440	ko02010,map02010	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	BPD_transp_2
SX3_k127_5581279_18	1297865.APJD01000039_gene1708	3.317e-154	489.0	COG1879@1|root,COG1879@2|Bacteria,1NRXG@1224|Proteobacteria,2TT8F@28211|Alphaproteobacteria,3JU5A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding proteins and sugar binding domain of LacI family	MA20_14250	-	-	ko:K10439	ko02010,ko02030,map02010,map02030	M00212	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.1,3.A.1.2.13,3.A.1.2.19	-	-	Peripla_BP_4
SX3_k127_5585489_1	1297865.APJD01000005_gene3768	6.483e-97	317.0	COG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,1MVI9@1224|Proteobacteria,2TT1Y@28211|Alphaproteobacteria,3JRJB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K16554	ko05111,map05111	-	-	-	ko00000,ko00001,ko02000	8.A.3.1	-	-	AAA_31,GNVR,Wzz
SX3_k127_5585489_0	1297865.APJD01000005_gene3767	3.635e-244	757.0	COG1596@1|root,COG1596@2|Bacteria,1N7GP@1224|Proteobacteria,2TS5Q@28211|Alphaproteobacteria,3JVK9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	pssN	-	-	ko:K01991	ko02026,map02026	-	-	-	ko00000,ko00001,ko02000	1.B.18	-	-	Poly_export,SLBB
SX3_k127_5585489_2	1297865.APJD01000005_gene3766	5.558e-61	211.0	2AGQ5@1|root,316XV@2|Bacteria,1NIP3@1224|Proteobacteria,2UM87@28211|Alphaproteobacteria,3K1T3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5585489_4	172088.AUGA01000026_gene352	5.389e-20	94.0	29FQA@1|root,302MX@2|Bacteria,1NDMU@1224|Proteobacteria,2UIGC@28211|Alphaproteobacteria,3K1N0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5585489_3	398525.KB900701_gene3792	1.152e-20	93.0	28J33@1|root,2Z8ZD@2|Bacteria,1R6CT@1224|Proteobacteria,2TTBV@28211|Alphaproteobacteria,3JWX1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5587960_2	1297865.APJD01000011_gene6723	1.037e-171	539.0	COG0235@1|root,COG0235@2|Bacteria,1MWP9@1224|Proteobacteria,2TRMV@28211|Alphaproteobacteria,3JUHS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Class II Aldolase and Adducin N-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Aldolase_II
SX3_k127_5587960_1	1297865.APJD01000011_gene6722	1.415e-196	613.0	COG1893@1|root,COG1893@2|Bacteria,1QZG9@1224|Proteobacteria,2U2Y4@28211|Alphaproteobacteria,3K5Z8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Ketopantoate reductase PanE/ApbA C terminal	-	-	1.1.1.169	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R02472	RC00726	ko00000,ko00001,ko00002,ko01000	-	-	-	ApbA,ApbA_C
SX3_k127_5587960_0	1297865.APJD01000011_gene6721	0.0	1134.0	COG1384@1|root,COG1384@2|Bacteria,1MV32@1224|Proteobacteria,2TQYH@28211|Alphaproteobacteria,3JU8P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the class-I aminoacyl-tRNA synthetase family	lysS	-	6.1.1.6	ko:K04566	ko00970,map00970	M00360	R03658	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1f
SX3_k127_5616855_11	1297865.APJD01000003_gene6490	3.353e-41	151.0	COG4122@1|root,COG4122@2|Bacteria,1N57D@1224|Proteobacteria,2TT8Y@28211|Alphaproteobacteria,3JTNU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	O-methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24,Methyltransf_3
SX3_k127_5616855_3	1297865.APJD01000003_gene6489	3.293e-285	877.0	COG0457@1|root,COG0457@2|Bacteria,1R6ZR@1224|Proteobacteria,2U1T5@28211|Alphaproteobacteria,3JWHB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	DUF4071
SX3_k127_5616855_7	1297865.APJD01000003_gene6488	3.639e-128	410.0	COG0457@1|root,COG0457@2|Bacteria,1R48M@1224|Proteobacteria,2TTU6@28211|Alphaproteobacteria,3JXZ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5616855_4	1297865.APJD01000003_gene6487	6.16e-253	781.0	COG3621@1|root,COG3621@2|Bacteria,1R852@1224|Proteobacteria,2U354@28211|Alphaproteobacteria,3JX37@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Patatin-like phospholipase	-	-	-	-	-	-	-	-	-	-	-	-	Patatin
SX3_k127_5616855_2	1297865.APJD01000003_gene6486	3.277e-302	928.0	2A5UZ@1|root,30UKR@2|Bacteria,1R3W4@1224|Proteobacteria,2TSQP@28211|Alphaproteobacteria,3JXB4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
SX3_k127_5616855_8	1297865.APJD01000003_gene6485	5.326e-128	412.0	297U8@1|root,2ZV0W@2|Bacteria,1MVMY@1224|Proteobacteria,2U29E@28211|Alphaproteobacteria,3JR5G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5616855_10	172088.AUGA01000001_gene6384	6.932e-50	179.0	2ABSN@1|root,31195@2|Bacteria,1N44Y@1224|Proteobacteria,2UDIE@28211|Alphaproteobacteria,3K0I2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_20830	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5616855_5	1230476.C207_02610	2.72e-206	646.0	COG2070@1|root,COG2070@2|Bacteria,1MU0U@1224|Proteobacteria,2TRZS@28211|Alphaproteobacteria,3JU2E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	-	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_5616855_1	1297865.APJD01000003_gene6482	0.0	1058.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JQTA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_20840	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_5616855_0	1297865.APJD01000003_gene6481	0.0	1397.0	COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TQQ9@28211|Alphaproteobacteria,3JR0R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_3,PAS_4,Response_reg
SX3_k127_5616855_6	1297865.APJD01000003_gene6480	9.074e-162	510.0	COG2050@1|root,COG2050@2|Bacteria,1N57X@1224|Proteobacteria,2TVFU@28211|Alphaproteobacteria,3JS6X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase-like superfamily	-	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
SX3_k127_5616855_9	1297865.APJD01000003_gene6479	1.426e-61	212.0	COG2070@1|root,COG2070@2|Bacteria,1MU0U@1224|Proteobacteria,2TS5U@28211|Alphaproteobacteria,3JR77@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	MA20_20850	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_5617714_8	1297865.APJD01000026_gene2528	2.13e-148	473.0	COG3173@1|root,COG3173@2|Bacteria,1MWAK@1224|Proteobacteria,2TT2N@28211|Alphaproteobacteria,3JV5A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ecdysteroid kinase	-	-	-	-	-	-	-	-	-	-	-	-	APH
SX3_k127_5617714_1	1297865.APJD01000026_gene2529	1.54e-278	856.0	COG1960@1|root,COG1960@2|Bacteria,1MWUU@1224|Proteobacteria,2TT47@28211|Alphaproteobacteria,3K2GR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_5617714_7	1297865.APJD01000026_gene2530	2.212e-151	484.0	COG1028@1|root,COG1028@2|Bacteria,1MW9A@1224|Proteobacteria,2TRDT@28211|Alphaproteobacteria,3JS08@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_5617714_6	1297865.APJD01000026_gene2531	4.224e-155	490.0	COG1028@1|root,COG1028@2|Bacteria,1R4GG@1224|Proteobacteria,2VF4X@28211|Alphaproteobacteria,3K5YF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_5617714_0	1297865.APJD01000026_gene2532	0.0	1104.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3K2WU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	ko:K04116	ko00362,ko01120,map00362,map01120	M00540	R05620	RC00004,RC01438	ko00000,ko00001,ko00002,ko01000	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_5617714_3	1297865.APJD01000026_gene2533	6.802e-219	680.0	COG0604@1|root,COG0604@2|Bacteria,1MXUX@1224|Proteobacteria,2VEXE@28211|Alphaproteobacteria,3JWDQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_5617714_2	1297865.APJD01000026_gene2534	1.042e-253	784.0	COG0683@1|root,COG0683@2|Bacteria,1MWNB@1224|Proteobacteria,2U1BV@28211|Alphaproteobacteria,3K2DW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_5617714_10	1297865.APJD01000026_gene2535	1.932e-140	451.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2U61I@28211|Alphaproteobacteria,3K2KW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
SX3_k127_5617714_9	1297865.APJD01000026_gene2536	4.973e-143	456.0	COG0411@1|root,COG0411@2|Bacteria,1R6NR@1224|Proteobacteria,2U48J@28211|Alphaproteobacteria,3K2E8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_5617714_4	1297865.APJD01000026_gene2537	9.672e-204	655.0	COG4177@1|root,COG4177@2|Bacteria,1PR27@1224|Proteobacteria,2U5QT@28211|Alphaproteobacteria,3K30H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_2
SX3_k127_5617714_5	1297865.APJD01000026_gene2538	1.462e-165	522.0	COG0559@1|root,COG0559@2|Bacteria,1NWBN@1224|Proteobacteria,2U2TP@28211|Alphaproteobacteria,3K3JK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	-	-	-	-	-	-	-	-	-	BPD_transp_2
SX3_k127_5617714_11	1297865.APJD01000026_gene2539	2.91e-63	220.0	COG0406@1|root,COG0406@2|Bacteria	2|Bacteria	G	alpha-ribazole phosphatase activity	gpm	-	5.4.2.12	ko:K15634	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000	-	-	-	His_Phos_1
SX3_k127_5628605_7	1297865.APJD01000020_gene282	9.956e-22	94.0	2AEFV@1|root,314AY@2|Bacteria,1N9QK@1224|Proteobacteria,2UFY5@28211|Alphaproteobacteria,3K11P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5628605_5	1297865.APJD01000020_gene281	3.439e-55	195.0	2EHCE@1|root,33B49@2|Bacteria,1RHFN@1224|Proteobacteria,2UD1E@28211|Alphaproteobacteria,3K03F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Evidence 4 Homologs of previously reported genes of	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5628605_6	1297865.APJD01000020_gene280	2.626e-37	142.0	2EMTK@1|root,33FFY@2|Bacteria,1N44C@1224|Proteobacteria,2UDYR@28211|Alphaproteobacteria,3K0VH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	TIGRFAM pentapeptide MXKDX repeat protein	MA20_30155	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5628605_1	1297865.APJD01000020_gene279	1.082e-214	668.0	COG1638@1|root,COG1638@2|Bacteria,1MWAW@1224|Proteobacteria,2TV91@28211|Alphaproteobacteria,3JRW0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	MA20_30160	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_5628605_3	1297865.APJD01000020_gene278	6.244e-113	367.0	COG3090@1|root,COG3090@2|Bacteria,1MVKS@1224|Proteobacteria,2U08K@28211|Alphaproteobacteria,3JQRU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporters, DctQ component	MA20_30165	-	-	-	-	-	-	-	-	-	-	-	DctQ
SX3_k127_5628605_0	1297865.APJD01000020_gene277	1.442e-275	860.0	COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2TQW5@28211|Alphaproteobacteria,3JTXU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporter, DctM component	MA20_30170	-	-	-	-	-	-	-	-	-	-	-	DctM
SX3_k127_5628605_9	398525.KB900701_gene5140	1.17e-13	79.0	2AHX2@1|root,3189Z@2|Bacteria,1NNE1@1224|Proteobacteria,2UM40@28211|Alphaproteobacteria,3K1R8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5628605_8	398525.KB900701_gene5141	2.643e-14	75.0	2AG3W@1|root,3168H@2|Bacteria,1NGRP@1224|Proteobacteria,2UMBF@28211|Alphaproteobacteria,3K269@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5628605_2	1297865.APJD01000020_gene276	1.026e-183	578.0	COG3386@1|root,COG3386@2|Bacteria,1QN8Y@1224|Proteobacteria,2U82N@28211|Alphaproteobacteria,3JVZE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Strictosidine synthase	-	-	-	-	-	-	-	-	-	-	-	-	SGL
SX3_k127_5628605_4	1297865.APJD01000020_gene275	8.2e-75	253.0	COG0457@1|root,COG0741@1|root,COG0457@2|Bacteria,COG0741@2|Bacteria,1MV3F@1224|Proteobacteria,2TRDB@28211|Alphaproteobacteria,3JUG1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	slt	-	-	ko:K08309	-	-	-	-	ko00000,ko01000,ko01011	-	GH23	-	SLT
SX3_k127_563417_0	1297865.APJD01000006_gene4624	0.0	2229.0	COG2982@1|root,COG2982@2|Bacteria,1MUNH@1224|Proteobacteria,2TT0W@28211|Alphaproteobacteria,3JRU3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	AsmA-like C-terminal region	asmA	-	-	ko:K07289	-	-	-	-	ko00000	-	-	-	AsmA,AsmA_2
SX3_k127_563417_1	1297865.APJD01000006_gene4623	2.683e-274	844.0	COG2124@1|root,COG2124@2|Bacteria,1MY5H@1224|Proteobacteria,2TTRR@28211|Alphaproteobacteria,3JUUG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	MA20_02150	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_563417_2	1297865.APJD01000006_gene4622	3.07e-89	295.0	COG1309@1|root,COG1309@2|Bacteria,1MWKF@1224|Proteobacteria,2TRES@28211|Alphaproteobacteria,3JQWM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_02145	-	-	-	-	-	-	-	-	-	-	-	TetR_C_6,TetR_N
SX3_k127_5637086_3	398525.KB900701_gene335	4.766e-222	690.0	COG3288@1|root,COG3288@2|Bacteria,1MVXU@1224|Proteobacteria,2TSZN@28211|Alphaproteobacteria,3JU1M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Alanine dehydrogenase/PNT, C-terminal domain	pntAA	GO:0000166,GO:0003674,GO:0003824,GO:0003957,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0022857,GO:0022890,GO:0034220,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050662,GO:0051179,GO:0051186,GO:0051234,GO:0051287,GO:0055085,GO:0055086,GO:0055114,GO:0070403,GO:0070404,GO:0071704,GO:0072524,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902600	1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	AlaDh_PNT_C,AlaDh_PNT_N
SX3_k127_5637086_7	1297865.APJD01000079_gene2636	9.674e-56	200.0	COG3288@1|root,COG3288@2|Bacteria,1MZ3E@1224|Proteobacteria,2UBXS@28211|Alphaproteobacteria,3JYY1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	4TM region of pyridine nucleotide transhydrogenase, mitoch	pntAB	GO:0008150,GO:0008152,GO:0055114	1.6.1.2	ko:K00324	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	PNTB_4TM
SX3_k127_5637086_0	1230476.C207_04425	2.78e-283	872.0	COG1282@1|root,COG1282@2|Bacteria,1MUP4@1224|Proteobacteria,2TQN1@28211|Alphaproteobacteria,3JTA7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane	pntB	GO:0008150,GO:0008152,GO:0055114	1.6.1.2	ko:K00325	ko00760,ko01100,map00760,map01100	-	R00112	RC00001	ko00000,ko00001,ko01000	-	-	-	PNTB
SX3_k127_5637086_6	1297865.APJD01000002_gene4019	1.214e-128	414.0	COG0028@1|root,COG0028@2|Bacteria,1R6QP@1224|Proteobacteria,2TUEF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	EH	COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase	comE	-	4.1.1.79	ko:K13039	ko00680,ko01120,map00680,map01120	M00358	R05774	RC00506	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C
SX3_k127_5637086_8	1220534.B655_0036	3.052e-18	91.0	COG4032@1|root,arCOG01613@2157|Archaea,2XYBY@28890|Euryarchaeota,23PJE@183925|Methanobacteria	183925|Methanobacteria	S	sulfopyruvate decarboxylase, alpha subunit	comD	-	4.1.1.79	ko:K06034	ko00680,ko01120,map00680,map01120	M00358	R05774	RC00506	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_N
SX3_k127_5637086_2	1297865.APJD01000002_gene4021	1.689e-222	691.0	COG0687@1|root,COG0687@2|Bacteria,1MWG5@1224|Proteobacteria,2TTP2@28211|Alphaproteobacteria,3JV3Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_8
SX3_k127_5637086_4	1297865.APJD01000002_gene4022	3.993e-173	544.0	COG1176@1|root,COG1176@2|Bacteria,1MVFG@1224|Proteobacteria,2TSSR@28211|Alphaproteobacteria,3K664@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02054	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
SX3_k127_5637086_5	1297865.APJD01000002_gene4023	2.384e-168	529.0	COG1177@1|root,COG1177@2|Bacteria,1MWXM@1224|Proteobacteria,2TXYX@28211|Alphaproteobacteria,3JSD3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02053	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
SX3_k127_5637086_1	1297865.APJD01000002_gene4024	6.615e-231	715.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,3JRKH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system	-	-	3.6.3.31	ko:K02049,ko:K02052,ko:K11072	ko02010,ko02024,map02010,map02024	M00188,M00193,M00299	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.11,3.A.1.11.1,3.A.1.16,3.A.1.17	-	-	ABC_tran,TOBE_2
SX3_k127_5658131_5	1297865.APJD01000003_gene6294	2.989e-200	624.0	COG3000@1|root,COG3000@2|Bacteria,1MW5G@1224|Proteobacteria,2TU63@28211|Alphaproteobacteria,3JVEM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Fatty acid hydroxylase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	FA_hydroxylase
SX3_k127_5658131_13	1297865.APJD01000003_gene6293	1.47e-122	394.0	COG1309@1|root,COG1309@2|Bacteria,1MW6I@1224|Proteobacteria,2UBXJ@28211|Alphaproteobacteria,3JVS9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	BetI-type transcriptional repressor, C-terminal	-	-	-	-	-	-	-	-	-	-	-	-	TetR_C_6,TetR_N
SX3_k127_5658131_8	1297865.APJD01000003_gene6292	1.217e-161	512.0	COG0730@1|root,COG0730@2|Bacteria,1NJFY@1224|Proteobacteria,2TU93@28211|Alphaproteobacteria,3JR4Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfite exporter TauE/SafE	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_5658131_15	1297865.APJD01000003_gene6291	2.695e-92	304.0	COG5646@1|root,COG5646@2|Bacteria,1N03F@1224|Proteobacteria,2U57T@28211|Alphaproteobacteria,3JYDA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	InterPro IPR014922	-	-	-	-	-	-	-	-	-	-	-	-	DUF1801
SX3_k127_5658131_0	1230476.C207_02836	0.0	1391.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JQV4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	MA20_40485	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,PAS_7,PAS_8
SX3_k127_5658131_16	1230476.C207_02837	5.931e-92	303.0	COG0454@1|root,COG0456@2|Bacteria,1MYBJ@1224|Proteobacteria,2UAK7@28211|Alphaproteobacteria,3K3Z5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_5658131_4	1297865.APJD01000003_gene6288	1.713e-216	671.0	COG3770@1|root,COG3770@2|Bacteria,1MU9I@1224|Proteobacteria,2TR3K@28211|Alphaproteobacteria,3JRJZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-insensitive murein endopeptidase	mepA	-	-	ko:K07261	-	-	-	-	ko00000,ko01000,ko01002,ko01011	-	-	-	Peptidase_M74
SX3_k127_5658131_14	1230476.C207_02839	1.583e-102	335.0	2C08V@1|root,3306E@2|Bacteria,1RB1Y@1224|Proteobacteria,2U6D9@28211|Alphaproteobacteria,3JX0J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Evidence 4 Homologs of previously reported genes of	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5658131_10	1297865.APJD01000003_gene6286	1.278e-154	490.0	COG0725@1|root,COG0725@2|Bacteria,1MVNA@1224|Proteobacteria,2U5B1@28211|Alphaproteobacteria,3JU6M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein	modA	-	-	ko:K02020	ko02010,map02010	M00189	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.8	-	-	SBP_bac_11
SX3_k127_5658131_11	1297865.APJD01000003_gene6285	9.678e-141	448.0	COG4149@1|root,COG4149@2|Bacteria,1MUXR@1224|Proteobacteria,2TSYJ@28211|Alphaproteobacteria,3JQTG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	modB	-	-	ko:K02018	ko02010,map02010	M00189	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.8	-	-	BPD_transp_1
SX3_k127_5658131_12	1297865.APJD01000003_gene6284	1.602e-137	439.0	COG4148@1|root,COG4148@2|Bacteria,1MU8K@1224|Proteobacteria,2TR1Z@28211|Alphaproteobacteria,3JUD5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system	modC	-	3.6.3.29	ko:K02017	ko02010,map02010	M00189	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.8	-	-	ABC_tran,TOBE
SX3_k127_5658131_3	1297865.APJD01000003_gene6283	1.159e-232	723.0	2CINT@1|root,301A0@2|Bacteria,1R4NK@1224|Proteobacteria,2U2Y1@28211|Alphaproteobacteria,3JX4P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5658131_1	1297865.APJD01000003_gene6282	0.0	1134.0	COG3263@1|root,COG3263@2|Bacteria,1MVKV@1224|Proteobacteria,2TSZJ@28211|Alphaproteobacteria,3JR2B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Transporter associated domain	cvrA	-	-	ko:K11105	-	-	-	-	ko00000,ko02000	2.A.36.6	-	-	CorC_HlyC,Na_H_Exchanger
SX3_k127_5658131_2	1297865.APJD01000003_gene6281	2.899e-269	831.0	COG3264@1|root,COG3264@2|Bacteria,1MWSA@1224|Proteobacteria,2TRKK@28211|Alphaproteobacteria,3JSMB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mechanosensitive ion channel	MA20_40450	-	-	-	-	-	-	-	-	-	-	-	MS_channel
SX3_k127_5658131_7	1297865.APJD01000003_gene6280	3.632e-184	577.0	COG0024@1|root,COG0024@2|Bacteria,1MU99@1224|Proteobacteria,2TQTH@28211|Alphaproteobacteria,3JT7V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Methionine aminopeptidase	map	-	3.4.11.18	ko:K01265	-	-	-	-	ko00000,ko01000,ko01002	-	-	-	Peptidase_M24
SX3_k127_5658131_9	1297865.APJD01000003_gene6279	6.176e-157	502.0	COG2818@1|root,COG2818@2|Bacteria,1R3WB@1224|Proteobacteria,2TTR8@28211|Alphaproteobacteria,3JRTZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Methyladenine glycosylase	MA20_23545	-	-	-	-	-	-	-	-	-	-	-	Adenine_glyco
SX3_k127_5658131_6	1297865.APJD01000003_gene6278	6.967e-187	585.0	COG3485@1|root,COG3485@2|Bacteria,1MV6K@1224|Proteobacteria,2TUS4@28211|Alphaproteobacteria,3JV34@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Dioxygenase	-	-	-	-	-	-	-	-	-	-	-	-	Dioxygenase_C
SX3_k127_5658131_17	1297865.APJD01000003_gene6277	0.0001043	51.0	COG2003@1|root,COG2003@2|Bacteria,1MXZ5@1224|Proteobacteria,2TQXM@28211|Alphaproteobacteria,3JUPY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the UPF0758 family	radC	-	-	ko:K03630	-	-	-	-	ko00000	-	-	-	RadC
SX3_k127_5678264_27	1297865.APJD01000010_gene5123	8.099e-50	177.0	COG1028@1|root,COG1028@2|Bacteria,1N8G3@1224|Proteobacteria,2TUTY@28211|Alphaproteobacteria,3JSK3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short,adh_short_C2
SX3_k127_5678264_24	1297865.APJD01000010_gene5122	1.179e-69	237.0	2A59E@1|root,30XB5@2|Bacteria,1RFYY@1224|Proteobacteria,2U87X@28211|Alphaproteobacteria,3JZ3E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	GrlR
SX3_k127_5678264_13	1297865.APJD01000010_gene5121	4.364e-143	456.0	COG5482@1|root,COG5482@2|Bacteria,1MWIN@1224|Proteobacteria,2TS4R@28211|Alphaproteobacteria,3JQR1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative PD-(D/E)XK phosphodiesterase (DUF2161)	MA20_28540	-	-	-	-	-	-	-	-	-	-	-	DUF2161
SX3_k127_5678264_25	1297865.APJD01000010_gene5120	6.704e-58	202.0	COG1359@1|root,COG1359@2|Bacteria,1N5CD@1224|Proteobacteria,2UB7Q@28211|Alphaproteobacteria,3JZV8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	-	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_5678264_26	1297865.APJD01000010_gene5119	4.596e-57	201.0	2DIWC@1|root,32UBW@2|Bacteria,1RKUE@1224|Proteobacteria,2U9ET@28211|Alphaproteobacteria,3JZ9C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_28530	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5678264_14	1297865.APJD01000010_gene5118	1.679e-131	420.0	COG1247@1|root,COG1247@2|Bacteria,1N0PB@1224|Proteobacteria,2UC2G@28211|Alphaproteobacteria,3JST0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) family	MA20_28525	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_5678264_23	1297865.APJD01000010_gene5117	8.424e-72	259.0	COG2050@1|root,COG2050@2|Bacteria,1PP3J@1224|Proteobacteria,2U5E4@28211|Alphaproteobacteria,3JY0G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase superfamily	MA20_28520	-	-	-	-	-	-	-	-	-	-	-	4HBT
SX3_k127_5678264_11	1297865.APJD01000010_gene5116	4.919e-163	524.0	COG0614@1|root,COG0614@2|Bacteria,1PK1C@1224|Proteobacteria,2TRF4@28211|Alphaproteobacteria,3JUAC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Periplasmic binding protein	-	-	-	ko:K02016	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.14	-	-	Peripla_BP_2
SX3_k127_5678264_7	1230476.C207_05355	3.326e-284	873.0	COG0624@1|root,COG0624@2|Bacteria,1MW2W@1224|Proteobacteria,2TQYZ@28211|Alphaproteobacteria,3JRQD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase dimerisation domain	MA20_28495	-	3.5.1.16	ko:K01438	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028,M00845	R00669,R09107	RC00064,RC00300	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_5678264_12	398525.KB900701_gene4574	1.032e-152	486.0	COG3467@1|root,COG3467@2|Bacteria,1MWQE@1224|Proteobacteria,2TR7J@28211|Alphaproteobacteria,3JVXP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Pyridoxamine 5'-phosphate oxidase	MA20_28490	-	-	ko:K07005	-	-	-	-	ko00000	-	-	-	Pyridox_ox_2
SX3_k127_5678264_6	1297865.APJD01000010_gene5113	6.302e-320	982.0	COG1167@1|root,COG1167@2|Bacteria,1MVGT@1224|Proteobacteria,2TRK7@28211|Alphaproteobacteria,3JQR8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix gluconate operon transcriptional repressor	-	-	-	ko:K00375	-	-	-	-	ko00000,ko03000	-	-	-	Aminotran_1_2,GntR
SX3_k127_5678264_31	1297865.APJD01000010_gene5112	1.952e-24	103.0	2BQR4@1|root,32JMR@2|Bacteria,1N6WJ@1224|Proteobacteria,2UFIB@28211|Alphaproteobacteria,3K0WZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5678264_29	1297865.APJD01000010_gene5111	7.908e-41	156.0	2AE7W@1|root,3141W@2|Bacteria,1N8XU@1224|Proteobacteria,2UFAI@28211|Alphaproteobacteria,3K138@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5678264_22	1297865.APJD01000010_gene5110	4.035e-76	256.0	2BTPH@1|root,32NWI@2|Bacteria,1RE8E@1224|Proteobacteria,2U829@28211|Alphaproteobacteria,3JZ43@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5678264_32	1297865.APJD01000010_gene5109	5.467e-22	99.0	29EP4@1|root,301M0@2|Bacteria,1N8TY@1224|Proteobacteria,2UGVR@28211|Alphaproteobacteria,3K183@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5678264_30	1297865.APJD01000010_gene5108	2.097e-40	151.0	2A722@1|root,30VXF@2|Bacteria,1N21K@1224|Proteobacteria,2UDTP@28211|Alphaproteobacteria,3K06K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5678264_18	1297865.APJD01000010_gene5107	7.503e-108	352.0	COG3045@1|root,COG3045@2|Bacteria,1RDMP@1224|Proteobacteria,2U72F@28211|Alphaproteobacteria,3JSEB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CreA protein	creA	-	-	ko:K05805	-	-	-	-	ko00000	-	-	-	CreA
SX3_k127_5678264_4	1297865.APJD01000010_gene5106	0.0	1087.0	COG1376@1|root,COG1376@2|Bacteria,1Q823@1224|Proteobacteria,2TV64@28211|Alphaproteobacteria,3JR6Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ErfK YbiS YcfS YnhG family protein	-	-	-	-	-	-	-	-	-	-	-	-	PG_binding_1,YkuD
SX3_k127_5678264_15	1297865.APJD01000010_gene5105	3.12e-131	429.0	COG0386@1|root,COG0386@2|Bacteria,1RD1R@1224|Proteobacteria,2TU17@28211|Alphaproteobacteria,3JV9G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the glutathione peroxidase family	bsaA	-	1.11.1.9	ko:K00432	ko00480,ko00590,ko04918,map00480,map00590,map04918	-	R00274,R07034,R07035	RC00011,RC00982	ko00000,ko00001,ko01000	-	-	-	GSHPx
SX3_k127_5678264_9	172088.AUGA01000025_gene473	2.082e-192	604.0	COG0726@1|root,COG0726@2|Bacteria,1PJQG@1224|Proteobacteria,2TUBN@28211|Alphaproteobacteria,3JRBS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Polysaccharide deacetylase	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_5678264_17	1297865.APJD01000010_gene5103	1.577e-117	379.0	COG0262@1|root,COG0262@2|Bacteria,1Q00Z@1224|Proteobacteria,2TTFQ@28211|Alphaproteobacteria,3JTT8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis	-	-	-	-	-	-	-	-	-	-	-	-	DHFR_1
SX3_k127_5678264_8	1297865.APJD01000010_gene5102	2.503e-235	733.0	COG2207@1|root,COG2207@2|Bacteria,1Q1II@1224|Proteobacteria,2TUE0@28211|Alphaproteobacteria,3JS0J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_5678264_20	1297865.APJD01000010_gene5101	4.692e-89	294.0	COG2259@1|root,COG2259@2|Bacteria,1RIJS@1224|Proteobacteria,2UB1T@28211|Alphaproteobacteria,3JZMA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HR-like lesion-inducing	-	-	-	-	-	-	-	-	-	-	-	-	DoxX
SX3_k127_5678264_0	1297865.APJD01000010_gene5100	0.0	1509.0	COG0280@1|root,COG0281@1|root,COG0280@2|Bacteria,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,2TQJT@28211|Alphaproteobacteria,3JSQR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Malic enzyme, NAD binding domain	dme	GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114	1.1.1.40	ko:K00029	ko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200	M00169,M00172	R00216	RC00105	ko00000,ko00001,ko00002,ko01000	-	-	-	Malic_M,PTA_PTB,malic
SX3_k127_5678264_1	1297865.APJD01000010_gene5099	0.0	1279.0	2AJVW@1|root,31AIN@2|Bacteria,1R8N4@1224|Proteobacteria,2TU2Z@28211|Alphaproteobacteria,3JTQ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5678264_3	1297865.APJD01000010_gene5097	0.0	1169.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,2TR1M@28211|Alphaproteobacteria,3JW8Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_4,PAS_7,Response_reg,dCache_1
SX3_k127_5678264_28	1000565.METUNv1_01904	1.063e-44	171.0	COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,2VMX4@28216|Betaproteobacteria,2KW82@206389|Rhodocyclales	28216|Betaproteobacteria	K	COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	epsR	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_5678264_2	1230476.C207_05550	0.0	1231.0	COG0173@1|root,COG0173@2|Bacteria,1MUXB@1224|Proteobacteria,2TR9U@28211|Alphaproteobacteria,3JTEV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)	aspS	-	6.1.1.12	ko:K01876	ko00970,map00970	M00359,M00360	R05577	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	-	-	-	GAD,tRNA-synt_2,tRNA_anti-codon
SX3_k127_5678264_5	1297865.APJD01000010_gene5094	9.313e-321	986.0	COG0397@1|root,COG0397@2|Bacteria,1MVK3@1224|Proteobacteria,2TT84@28211|Alphaproteobacteria,3JTYR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0061 (SELO) family	MA20_28420	-	-	ko:K08997	-	-	-	-	ko00000	-	-	-	UPF0061
SX3_k127_5678264_19	1297865.APJD01000010_gene5093	1.489e-100	332.0	COG0604@1|root,COG0604@2|Bacteria,1MWBD@1224|Proteobacteria,2TVNB@28211|Alphaproteobacteria,3JUWB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N,ADH_zinc_N_2
SX3_k127_5678264_21	1297865.APJD01000010_gene5091	3.911e-88	290.0	COG0346@1|root,COG0346@2|Bacteria,1RD0N@1224|Proteobacteria,2U7D1@28211|Alphaproteobacteria,3JYZR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_5704148_3	224911.27354284	9.447e-168	538.0	COG0438@1|root,COG0438@2|Bacteria,1PEGM@1224|Proteobacteria,2U15S@28211|Alphaproteobacteria,3JWQK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_1
SX3_k127_5704148_0	1297865.APJD01000016_gene3405	3.395e-200	623.0	COG0451@1|root,COG0451@2|Bacteria,1QRS2@1224|Proteobacteria,2U2FA@28211|Alphaproteobacteria,3JX18@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	RmlD substrate binding domain	-	-	5.1.3.2	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase
SX3_k127_5704148_2	1297865.APJD01000016_gene3404	1.943e-182	571.0	COG0500@1|root,COG2226@2|Bacteria,1PN45@1224|Proteobacteria,2U137@28211|Alphaproteobacteria,3JTDX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Putative S-adenosyl-L-methionine-dependent methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_5704148_5	1121448.DGI_4016	8.346e-48	178.0	COG0110@1|root,COG0110@2|Bacteria,1N6SQ@1224|Proteobacteria,42PE2@68525|delta/epsilon subdivisions,2WKVK@28221|Deltaproteobacteria,2MDRS@213115|Desulfovibrionales	28221|Deltaproteobacteria	S	Bacterial transferase hexapeptide (six repeats)	-	-	2.3.1.79	ko:K00661	-	-	-	-	ko00000,ko01000	-	-	-	Hexapep,Hexapep_2
SX3_k127_5704148_1	1297865.APJD01000016_gene3402	1.631e-183	583.0	COG2227@1|root,COG2227@2|Bacteria,1RCSH@1224|Proteobacteria,2U5XV@28211|Alphaproteobacteria,3JYCI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_5704148_4	1297865.APJD01000016_gene3401	3.994e-114	368.0	COG4641@1|root,COG4641@2|Bacteria,1R62R@1224|Proteobacteria,2TVHD@28211|Alphaproteobacteria,3JWFP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_2
SX3_k127_5706680_16	1297865.APJD01000009_gene2714	1.199e-66	232.0	COG2916@1|root,COG2916@2|Bacteria,1N801@1224|Proteobacteria,2UF4Y@28211|Alphaproteobacteria,3K0FB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain in histone-like proteins of HNS family	hvrA	-	-	ko:K03746	-	-	-	-	ko00000,ko03036,ko03400	-	-	-	Histone_HNS
SX3_k127_5706680_1	1297865.APJD01000009_gene2715	1.674e-296	912.0	COG2148@1|root,COG2148@2|Bacteria,1MV6W@1224|Proteobacteria,2TRZA@28211|Alphaproteobacteria,3JSHU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	2.7.8.6	ko:K00996,ko:K03606	ko05111,map05111	-	-	-	ko00000,ko00001,ko01000,ko01005	-	-	-	Bac_transf,CoA_binding_3
SX3_k127_5706680_6	1297865.APJD01000009_gene2717	3.746e-202	633.0	COG2114@1|root,COG2114@2|Bacteria,1R99D@1224|Proteobacteria,2U44F@28211|Alphaproteobacteria,3JXW7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	Guanylate_cyc
SX3_k127_5706680_4	1297865.APJD01000009_gene2718	1.099e-245	760.0	COG0381@1|root,COG0381@2|Bacteria,1MWZN@1224|Proteobacteria,2TTGZ@28211|Alphaproteobacteria,3JTYU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	UDP-N-acetylglucosamine 2-epimerase	wecB	-	5.1.3.14	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	M00362	R00420	RC00290	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Epimerase_2
SX3_k127_5706680_0	1297865.APJD01000009_gene2719	0.0	1023.0	COG1215@1|root,COG1215@2|Bacteria,1P7GR@1224|Proteobacteria,2TS4P@28211|Alphaproteobacteria,3JSV6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family group 2	-	-	-	ko:K11740	-	-	-	-	ko00000	-	-	-	Glyco_tranf_2_3,Glyco_trans_2_3,T2SSE_N
SX3_k127_5706680_18	1297865.APJD01000009_gene2721	3.584e-48	175.0	2ACPH@1|root,312A4@2|Bacteria,1N38T@1224|Proteobacteria,2UDK9@28211|Alphaproteobacteria,3K02T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5706680_13	1297865.APJD01000009_gene2722	1.555e-111	361.0	COG1432@1|root,COG1432@2|Bacteria,1PY4A@1224|Proteobacteria,2U1H3@28211|Alphaproteobacteria,3JSUJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NYN domain	-	-	-	-	-	-	-	-	-	-	-	-	NYN
SX3_k127_5706680_20	1297865.APJD01000009_gene2723	2.566e-43	160.0	2AHIA@1|root,317VW@2|Bacteria,1NKZ9@1224|Proteobacteria,2UNJR@28211|Alphaproteobacteria,3K22N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5706680_11	1297865.APJD01000009_gene2724	6.899e-125	409.0	2EBY0@1|root,335XC@2|Bacteria,1RGD9@1224|Proteobacteria,2U24N@28211|Alphaproteobacteria,3JRU0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5706680_19	1297865.APJD01000009_gene2725	2.212e-46	172.0	COG3131@1|root,COG3131@2|Bacteria,1N8PC@1224|Proteobacteria,2UGG1@28211|Alphaproteobacteria,3K1CQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5706680_8	1297865.APJD01000009_gene2727	9.612e-171	540.0	2ANSW@1|root,31DT4@2|Bacteria,1P5AS@1224|Proteobacteria,2UY9Q@28211|Alphaproteobacteria,3K58M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5706680_23	1235803.C825_03262	3.751e-24	115.0	COG3591@1|root,COG3591@2|Bacteria,4NT7K@976|Bacteroidetes,2FZE5@200643|Bacteroidia,231B5@171551|Porphyromonadaceae	976|Bacteroidetes	E	Trypsin-like peptidase domain	-	-	-	-	-	-	-	-	-	-	-	-	Trypsin_2
SX3_k127_5706680_28	443598.AUFA01000071_gene6330	3.043e-06	49.0	COG3677@1|root,COG3677@2|Bacteria,1MXYX@1224|Proteobacteria,2TQR3@28211|Alphaproteobacteria,3JU79@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	ISXO2-like transposase domain	-	-	-	-	-	-	-	-	-	-	-	-	DDE_Tnp_IS1595,Zn_Tnp_IS1595
SX3_k127_5706680_5	1230476.C207_03287	1.839e-241	751.0	COG0304@1|root,COG0304@2|Bacteria,1MU1X@1224|Proteobacteria,2TSNN@28211|Alphaproteobacteria,3JRVN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	MA20_42255	-	2.3.1.179	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119	RC00039,RC02728,RC02729,RC02888	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	Ketoacyl-synt_C,ketoacyl-synt
SX3_k127_5706680_27	224911.27348412	6.366e-07	60.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5706680_15	1297865.APJD01000009_gene2729	3.507e-91	302.0	COG3476@1|root,COG3476@2|Bacteria,1MZC1@1224|Proteobacteria,2UBYB@28211|Alphaproteobacteria,3JYIU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	TspO/MBR family	tspO	-	-	ko:K05770	ko04080,ko04214,ko04979,ko05166,map04080,map04214,map04979,map05166	-	-	-	ko00000,ko00001,ko02000	9.A.24	-	-	TspO_MBR
SX3_k127_5706680_7	1297865.APJD01000009_gene2731	4.716e-197	616.0	COG2207@1|root,COG2207@2|Bacteria,1R4HX@1224|Proteobacteria,2U6XY@28211|Alphaproteobacteria,3JV2I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_5706680_12	1297865.APJD01000009_gene2732	7.5e-121	394.0	COG1309@1|root,COG1309@2|Bacteria,1RADD@1224|Proteobacteria,2U6I8@28211|Alphaproteobacteria,3K6GB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_5706680_2	1297865.APJD01000009_gene2733	2.827e-266	822.0	COG0477@1|root,COG2814@2|Bacteria,1MVHG@1224|Proteobacteria,2TRA4@28211|Alphaproteobacteria,3JWMK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_5706680_9	1297865.APJD01000009_gene2734	5.352e-152	481.0	COG5033@1|root,COG5033@2|Bacteria,1NBJM@1224|Proteobacteria	1224|Proteobacteria	K	YEATS family	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2,YEATS
SX3_k127_5706680_10	1297865.APJD01000009_gene2735	4.314e-131	421.0	2AQ1T@1|root,31F6V@2|Bacteria,1P72R@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5706680_29	1197906.CAJQ02000046_gene3843	4.587e-05	46.0	COG1961@1|root,COG1961@2|Bacteria,1MWCZ@1224|Proteobacteria,2TRIY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	Resolvase	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
SX3_k127_5706680_14	1297865.APJD01000009_gene2736	2.834e-99	323.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U6Z6@28211|Alphaproteobacteria,3JRRA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	MA20_34360	-	1.3.99.16	ko:K07302	-	-	-	-	ko00000,ko01000	-	-	-	Fer2,Fer2_2
SX3_k127_5706680_3	1297865.APJD01000009_gene2737	1.189e-246	764.0	COG1529@1|root,COG1529@2|Bacteria,1QTTJ@1224|Proteobacteria,2TQVK@28211|Alphaproteobacteria,3JSM1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	MA20_34355	-	1.3.99.16	ko:K07303	-	-	-	-	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_5707892_2	1297865.APJD01000001_gene5981	0.0	1275.0	COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,2TRX2@28211|Alphaproteobacteria,3JSGG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs	rne	-	3.1.26.12	ko:K08300	ko03018,map03018	M00394	-	-	ko00000,ko00001,ko00002,ko01000,ko03009,ko03019	-	-	-	RNase_E_G,S1
SX3_k127_5707892_8	1297865.APJD01000001_gene5979	3.478e-110	357.0	2BT1Y@1|root,32N69@2|Bacteria,1R9BE@1224|Proteobacteria,2U1H7@28211|Alphaproteobacteria,3JWFK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5707892_4	1297865.APJD01000001_gene5978	3.588e-261	808.0	COG0860@1|root,COG0860@2|Bacteria,1MUQK@1224|Proteobacteria,2U0K2@28211|Alphaproteobacteria,3JSWS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Ami_3	amiC	-	3.5.1.28	ko:K01448	ko01503,map01503	M00727	R04112	RC00064,RC00141	ko00000,ko00001,ko00002,ko01000,ko01011,ko03036	-	-	-	AMIN,Amidase_3
SX3_k127_5707892_12	261292.Nit79A3_1973	0.0004742	44.0	COG0642@1|root,COG2205@2|Bacteria,1MUZQ@1224|Proteobacteria,2VH62@28216|Betaproteobacteria	28216|Betaproteobacteria	T	Histidine kinase	kdpD	-	2.7.13.3	ko:K07646	ko02020,map02020	M00454	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	DUF4118,GAF_3,HATPase_c,HisKA,KdpD
SX3_k127_5707892_0	1297865.APJD01000001_gene5977	0.0	1680.0	COG5009@1|root,COG5009@2|Bacteria,1MU5A@1224|Proteobacteria,2USBB@28211|Alphaproteobacteria,3JRJK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-binding protein OB-like domain	mrcA	-	2.4.1.129,3.4.16.4	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	PCB_OB,Transgly,Transpeptidase
SX3_k127_5707892_5	652103.Rpdx1_3058	4.574e-213	663.0	COG1186@1|root,COG1186@2|Bacteria,1MUAW@1224|Proteobacteria,2TR9V@28211|Alphaproteobacteria,3JUE0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA	prfB	-	-	ko:K02836	-	-	-	-	ko00000,ko03012	-	-	-	PCRF,RF-1
SX3_k127_5707892_6	1297865.APJD01000001_gene5975	1.389e-171	540.0	COG2084@1|root,COG2084@2|Bacteria,1P0X0@1224|Proteobacteria,2TXTS@28211|Alphaproteobacteria,3JS04@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	MA20_29235	-	1.1.1.31	ko:K00020	ko00280,ko01100,map00280,map01100	-	R05066	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_5707892_10	224911.27352803	1.481e-09	60.0	COG1173@1|root,COG1173@2|Bacteria,1MWP1@1224|Proteobacteria,2TSUG@28211|Alphaproteobacteria,3JR90@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_13270	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_5707892_7	1040989.AWZU01000019_gene1935	1.028e-112	371.0	COG0697@1|root,COG0697@2|Bacteria,1MZQM@1224|Proteobacteria,2TUPG@28211|Alphaproteobacteria,3JS7M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_5707892_1	1297865.APJD01000001_gene5973	0.0	1434.0	COG2192@1|root,COG2192@2|Bacteria,1R6HN@1224|Proteobacteria,2TTBS@28211|Alphaproteobacteria,3JW8M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Carbamoyltransferase C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	Carbam_trans_C,Carbam_trans_N
SX3_k127_5707892_3	1297865.APJD01000001_gene5972	2.148e-265	820.0	COG0683@1|root,COG0683@2|Bacteria,1MV1Z@1224|Proteobacteria,2TU6Q@28211|Alphaproteobacteria,3JUQS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_5707892_9	1297865.APJD01000001_gene5971	3.988e-43	157.0	COG3307@1|root,COG3307@2|Bacteria,1R495@1224|Proteobacteria,2TQUQ@28211|Alphaproteobacteria,3JTQD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	O-Antigen ligase	-	-	-	-	-	-	-	-	-	-	-	-	Wzy_C
SX3_k127_5724579_5	1297865.APJD01000007_gene1771	1.267e-214	665.0	COG2010@1|root,COG4993@1|root,COG2010@2|Bacteria,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TS2Q@28211|Alphaproteobacteria,3JRZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	-	-	1.1.9.1	ko:K17760	-	-	-	-	ko00000,ko01000	-	-	-	Cytochrom_C,Cytochrome_CBB3,PQQ,PQQ_2
SX3_k127_5724579_13	1297865.APJD01000007_gene1772	1.075e-74	252.0	COG5126@1|root,COG5126@2|Bacteria,1N18I@1224|Proteobacteria,2UDV5@28211|Alphaproteobacteria,3JY3B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	DTZ	EF-hand, calcium binding motif	MA20_34420	-	-	-	-	-	-	-	-	-	-	-	EF-hand_1,EF-hand_5,EF-hand_8
SX3_k127_5724579_10	1297865.APJD01000007_gene1773	1.56e-140	448.0	COG0684@1|root,COG0684@2|Bacteria,1MW9P@1224|Proteobacteria,2TTGT@28211|Alphaproteobacteria,3JTVV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Aldolase/RraA	-	-	-	ko:K02553	-	-	-	-	ko00000,ko03019	-	-	-	RraA-like
SX3_k127_5724579_3	1297865.APJD01000007_gene1774	1.34e-239	739.0	COG2159@1|root,COG2159@2|Bacteria,1MVHB@1224|Proteobacteria,2TVM0@28211|Alphaproteobacteria,3JW6H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	ligJ	-	4.1.1.45,4.2.1.83	ko:K03392,ko:K10220	ko00362,ko00380,ko01100,ko01120,map00362,map00380,map01100,map01120	M00038	R04323,R04478	RC00498,RC00779	ko00000,ko00001,ko00002,ko01000	-	-	-	Amidohydro_2
SX3_k127_5724579_1	1297865.APJD01000007_gene1775	3.936e-286	881.0	COG2271@1|root,COG2271@2|Bacteria,1MUEK@1224|Proteobacteria,2U3VK@28211|Alphaproteobacteria,3JVR9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_5724579_7	1297865.APJD01000007_gene1776	2.047e-191	598.0	COG0583@1|root,COG0583@2|Bacteria,1MXRP@1224|Proteobacteria,2U4RZ@28211|Alphaproteobacteria,3JVV4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5724579_2	1297865.APJD01000007_gene1777	2.368e-284	874.0	COG1116@1|root,COG4754@1|root,COG1116@2|Bacteria,COG4754@2|Bacteria,1MUDV@1224|Proteobacteria,2TRXZ@28211|Alphaproteobacteria,3JR9Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ABC transporter, ATP-binding protein	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	AAA_assoc_C,ABC_tran
SX3_k127_5724579_0	1297865.APJD01000007_gene1778	0.0	1149.0	COG4986@1|root,COG4986@2|Bacteria,1MV85@1224|Proteobacteria,2TTRP@28211|Alphaproteobacteria,3JUTR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_5724579_9	1297865.APJD01000007_gene1779	9.38e-152	481.0	COG0518@1|root,COG0518@2|Bacteria,1MV9U@1224|Proteobacteria,2TUIN@28211|Alphaproteobacteria,3JR7W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Glutamine amidotransferase class-I	-	-	6.3.5.2	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	M00050	R01230,R01231,R08244	RC00010,RC00204	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase
SX3_k127_5724579_6	1230476.C207_00203	2.826e-197	616.0	2EQX7@1|root,33IGZ@2|Bacteria,1MY64@1224|Proteobacteria,2TTE4@28211|Alphaproteobacteria,3JSMY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_35790	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5724579_11	1230476.C207_00204	9.624e-133	424.0	COG3038@1|root,COG3038@2|Bacteria,1MZ7X@1224|Proteobacteria,2UBYU@28211|Alphaproteobacteria,3JTR4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Prokaryotic cytochrome b561	-	-	-	ko:K12262	-	-	-	-	ko00000	-	-	-	Ni_hydr_CYTB,YceI
SX3_k127_5724579_12	1297865.APJD01000007_gene1782	2.331e-93	310.0	COG1522@1|root,COG1522@2|Bacteria,1RI7R@1224|Proteobacteria,2U9CC@28211|Alphaproteobacteria,3JVQX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	aldR	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_24,HTH_AsnC-type
SX3_k127_5724579_4	1297865.APJD01000007_gene1783	1.359e-230	717.0	COG0686@1|root,COG0686@2|Bacteria,1QTX1@1224|Proteobacteria,2TQQC@28211|Alphaproteobacteria,3JV8B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Alanine dehydrogenase/PNT, N-terminal domain	ald	-	1.4.1.1	ko:K00259	ko00250,ko00430,ko01100,map00250,map00430,map01100	-	R00396	RC00008	ko00000,ko00001,ko01000	-	-	-	AlaDh_PNT_C,AlaDh_PNT_N
SX3_k127_5724579_8	1230476.C207_00207	2.652e-156	495.0	COG1414@1|root,COG1414@2|Bacteria,1RFSY@1224|Proteobacteria,2U3M4@28211|Alphaproteobacteria,3JZWR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR,IclR
SX3_k127_5731960_3	1297865.APJD01000020_gene138	8.766e-52	183.0	COG0662@1|root,COG0662@2|Bacteria,1RIYH@1224|Proteobacteria,2U9H7@28211|Alphaproteobacteria,3K1TI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	AraC-like ligand binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_5731960_2	1297865.APJD01000020_gene139	1.142e-120	391.0	COG0583@1|root,COG0583@2|Bacteria,1PQWH@1224|Proteobacteria,2TU1R@28211|Alphaproteobacteria,3JT3U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5731960_1	1297865.APJD01000020_gene140	5.23e-144	459.0	2DBTP@1|root,2ZAZW@2|Bacteria,1QYZ8@1224|Proteobacteria,2TY2H@28211|Alphaproteobacteria,3K6W2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L-2-amino-thiazoline-4-carboxylic acid hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	ATC_hydrolase
SX3_k127_5731960_0	1297865.APJD01000020_gene141	3.605e-251	776.0	COG0477@1|root,COG2814@2|Bacteria,1MUBP@1224|Proteobacteria,2TQVH@28211|Alphaproteobacteria,3JXRU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	MFS_1 like family	mdtG	-	-	ko:K08161	-	-	-	-	ko00000,ko02000	2.A.1.2.20	-	-	MFS_1,Sugar_tr
SX3_k127_5731960_4	1297865.APJD01000020_gene142	8.82e-29	115.0	COG1802@1|root,COG1802@2|Bacteria,1NDRT@1224|Proteobacteria,2TUKM@28211|Alphaproteobacteria,3JWY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_5733097_2	1297865.APJD01000001_gene6043	1.796e-156	496.0	2BRAU@1|root,32K9C@2|Bacteria,1PI93@1224|Proteobacteria,2U2K7@28211|Alphaproteobacteria,3JUCH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5733097_4	1297865.APJD01000001_gene6042	1.374e-88	296.0	COG0797@1|root,COG0797@2|Bacteria,1MZ8S@1224|Proteobacteria,2UBTC@28211|Alphaproteobacteria,3JVXY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	-	-	-	ko:K03642	-	-	-	-	ko00000	-	-	-	DPBB_1
SX3_k127_5733097_0	1297865.APJD01000001_gene6041	0.0	1042.0	COG1680@1|root,COG1680@2|Bacteria,1NHIY@1224|Proteobacteria,2U0A3@28211|Alphaproteobacteria,3JXCG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	-	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_5733097_5	1230476.C207_05311	3.824e-33	130.0	2AJDJ@1|root,319Z5@2|Bacteria,1N8XD@1224|Proteobacteria,2UFYS@28211|Alphaproteobacteria,3K12U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5733097_1	1297865.APJD01000001_gene6039	5.222e-161	509.0	COG0500@1|root,COG2226@2|Bacteria,1MV7N@1224|Proteobacteria,2TVGZ@28211|Alphaproteobacteria,3JWFX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Protein of unknown function (DUF1698)	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_5733097_6	1230476.C207_05309	5.878e-25	104.0	2EJ3S@1|root,33CV1@2|Bacteria,1N8ZT@1224|Proteobacteria,2UFYU@28211|Alphaproteobacteria,3K0VR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5733097_3	1297865.APJD01000001_gene6037	1.939e-108	353.0	COG3812@1|root,COG3812@2|Bacteria,1RGUV@1224|Proteobacteria,2U9BA@28211|Alphaproteobacteria,3JU3W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1993)	-	-	-	ko:K09983	-	-	-	-	ko00000	-	-	-	DUF1993
SX3_k127_5749898_6	1297865.APJD01000006_gene4543	9.719e-95	312.0	COG2020@1|root,COG2020@2|Bacteria,1MWU6@1224|Proteobacteria,2TU80@28211|Alphaproteobacteria,3JQR6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	methyltransferase activity	-	-	2.1.1.334	ko:K21310	ko00920,map00920	-	R11546	RC02653	ko00000,ko00001,ko01000	-	-	-	NnrU,PEMT
SX3_k127_5749898_0	1297865.APJD01000006_gene4542	2e-323	992.0	COG0457@1|root,COG3710@1|root,COG5616@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,2TRUI@28211|Alphaproteobacteria,3JR8W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylate cyclase	-	-	-	-	-	-	-	-	-	-	-	-	Guanylate_cyc,TPR_16,TPR_2,TPR_8,Trans_reg_C
SX3_k127_5749898_4	224911.27355511	4.117e-139	447.0	COG1376@1|root,COG1376@2|Bacteria,1MVYT@1224|Proteobacteria,2U2MV@28211|Alphaproteobacteria,3JRNH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_5749898_3	1297865.APJD01000006_gene4540	7.662e-146	463.0	COG1028@1|root,COG1028@2|Bacteria,1PP5H@1224|Proteobacteria,2TTQV@28211|Alphaproteobacteria,3JTU3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_35765	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_5749898_8	1297865.APJD01000006_gene4539	8.135e-46	169.0	2ADH2@1|root,314W5@2|Bacteria,1NBTS@1224|Proteobacteria,2UHVW@28211|Alphaproteobacteria,3K134@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5749898_7	172088.AUGA01000004_gene3980	3.077e-70	239.0	COG0784@1|root,COG0784@2|Bacteria,1RIB9@1224|Proteobacteria,2U9C0@28211|Alphaproteobacteria,3JZDZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cheY-homologous receiver domain	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg
SX3_k127_5749898_1	1297865.APJD01000006_gene4537	2.771e-258	797.0	COG3921@1|root,COG3921@2|Bacteria,1N3WR@1224|Proteobacteria,2U1ZC@28211|Alphaproteobacteria,3JQY3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Extensin-like protein C-terminus	-	-	-	-	-	-	-	-	-	-	-	-	Extensin-like_C
SX3_k127_5749898_5	1297865.APJD01000006_gene4535	1.615e-128	419.0	COG1309@1|root,COG1309@2|Bacteria	2|Bacteria	K	transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_5749898_9	1297865.APJD01000006_gene4534	3.75e-23	98.0	COG4625@1|root,COG4625@2|Bacteria,1MU92@1224|Proteobacteria,2TSB7@28211|Alphaproteobacteria,3JUBZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Autotransporter beta-domain	-	-	-	-	-	-	-	-	-	-	-	-	Autotransporter,PATR
SX3_k127_5752434_2	1408427.JADB01000006_gene134	1.756e-13	72.0	2DTS4@1|root,33MFD@2|Bacteria,1PTGB@1224|Proteobacteria,2V5BU@28211|Alphaproteobacteria,48UEV@772|Bartonellaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5752434_0	1297865.APJD01000004_gene5309	0.0	1299.0	COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,2TT3Z@28211|Alphaproteobacteria,3JTRT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Peptidase family M23	MA20_20375	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M23
SX3_k127_5752434_1	1297865.APJD01000004_gene5310	9.379e-207	643.0	COG0542@1|root,COG0542@2|Bacteria,1MURH@1224|Proteobacteria,2TRKI@28211|Alphaproteobacteria,3JRD0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	clpB	-	-	ko:K03695	ko04213,map04213	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
SX3_k127_57534_10	1297865.APJD01000003_gene6308	2.432e-86	287.0	COG0748@1|root,COG0748@2|Bacteria,1RFVC@1224|Proteobacteria,2TV14@28211|Alphaproteobacteria,3JURX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Pyridoxamine 5'-phosphate oxidase	MA20_19930	-	-	ko:K07226	-	-	-	-	ko00000	-	-	-	DUF2470,Putative_PNPOx,Pyrid_oxidase_2
SX3_k127_57534_8	1297865.APJD01000003_gene6307	2.591e-148	469.0	COG0745@1|root,COG0745@2|Bacteria,1MVCB@1224|Proteobacteria,2TR43@28211|Alphaproteobacteria,3JR30@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Two component transcriptional regulator, winged helix family	chvI	GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141	-	ko:K14981	ko02020,map02020	M00520	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_57534_1	1297865.APJD01000003_gene6306	0.0	1176.0	COG0642@1|root,COG2205@2|Bacteria,1N17V@1224|Proteobacteria,2TS69@28211|Alphaproteobacteria,3JS5W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	chvG	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.13.3	ko:K14980	ko02020,map02020	M00520	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HAMP,HATPase_c,HisKA,Sensor_TM1,Stimulus_sens_1
SX3_k127_57534_11	1230476.C207_02823	3.198e-79	269.0	COG1493@1|root,COG1493@2|Bacteria,1NNN5@1224|Proteobacteria,2UFPB@28211|Alphaproteobacteria,3JZX2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	HPr Serine kinase C-terminal domain	hprK	-	-	ko:K06023	-	-	-	-	ko00000,ko01000	-	-	-	Hpr_kinase_C
SX3_k127_57534_9	1038859.AXAU01000026_gene2299	7.199e-89	294.0	COG2893@1|root,COG2893@2|Bacteria,1RHH7@1224|Proteobacteria,2U9E5@28211|Alphaproteobacteria,3JY47@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PTS system fructose IIA component	manX	-	2.7.1.191	ko:K02793	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	M00276	R02630	RC00017,RC03206	ko00000,ko00001,ko00002,ko01000,ko02000	4.A.6.1	-	-	EIIA-man
SX3_k127_57534_13	1297865.APJD01000003_gene6303	6.99e-58	206.0	COG1925@1|root,COG1925@2|Bacteria,1N6RM@1224|Proteobacteria,2UC0H@28211|Alphaproteobacteria,3JZF9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	system phosphocarrier protein HPr	ptsH	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006808,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0044424,GO:0044464,GO:0050789,GO:0051179,GO:0051234,GO:0065007,GO:0071702	-	ko:K11189	-	-	-	-	ko00000,ko02000	4.A.2.1	-	-	PTS-HPr
SX3_k127_57534_2	1297865.APJD01000003_gene6302	0.0	1080.0	COG1807@1|root,COG1807@2|Bacteria,1QA8B@1224|Proteobacteria,2TS1J@28211|Alphaproteobacteria,3JT1S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	MA20_19960	-	-	-	-	-	-	-	-	-	-	-	PMT_2
SX3_k127_57534_7	1297865.APJD01000003_gene6301	2.504e-166	523.0	COG0791@1|root,COG0791@2|Bacteria,1RBV6@1224|Proteobacteria,2TVPH@28211|Alphaproteobacteria,3JSUV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	D-alanyl-D-alanine carboxypeptidase	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M15_4
SX3_k127_57534_3	1297865.APJD01000003_gene6300	1.585e-296	911.0	COG1033@1|root,COG4249@1|root,COG4640@1|root,COG1033@2|Bacteria,COG4249@2|Bacteria,COG4640@2|Bacteria,1R3WZ@1224|Proteobacteria,2TTKN@28211|Alphaproteobacteria,3JSCS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Caspase domain	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_C14,YARHG
SX3_k127_57534_0	1297865.APJD01000003_gene6299	0.0	1198.0	COG0481@1|root,COG0481@2|Bacteria,1MVZA@1224|Proteobacteria,2TR3H@28211|Alphaproteobacteria,3JR8J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	lepA	-	-	ko:K03596	ko05134,map05134	-	-	-	ko00000,ko00001	-	-	-	EFG_C,EFG_II,GTP_EFTU,GTP_EFTU_D2,LepA_C
SX3_k127_57534_12	1297865.APJD01000003_gene6298	5.279e-73	245.0	28Q88@1|root,2ZCQY@2|Bacteria,1R9Z0@1224|Proteobacteria,2U8GP@28211|Alphaproteobacteria,3JZ6K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_57534_14	323097.Nham_3476	2.243e-06	56.0	COG5567@1|root,COG5567@2|Bacteria,1NEKY@1224|Proteobacteria,2UHV1@28211|Alphaproteobacteria,3K148@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Prokaryotic lipoprotein-attachment site	-	-	-	-	-	-	-	-	-	-	-	-	LPAM_2
SX3_k127_57534_5	1297865.APJD01000003_gene6297	3.172e-252	782.0	COG0477@1|root,COG2814@2|Bacteria,1MX2P@1224|Proteobacteria,2TUAS@28211|Alphaproteobacteria,3JQNE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_40510	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_57534_4	1297865.APJD01000003_gene6296	3.829e-254	784.0	COG1960@1|root,COG1960@2|Bacteria,1MXMQ@1224|Proteobacteria,2U0CV@28211|Alphaproteobacteria,3JVF6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.14.13.235	ko:K22027	-	-	-	-	ko00000,ko01000	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_N
SX3_k127_57534_6	1297865.APJD01000003_gene6295	1.507e-245	762.0	COG0840@1|root,COG2972@1|root,COG0840@2|Bacteria,COG2972@2|Bacteria,1MU9B@1224|Proteobacteria,2TQR7@28211|Alphaproteobacteria,3JSAR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NT	Double sensory domain of two-component sensor kinase	-	-	-	ko:K03406	ko02020,ko02030,map02020,map02030	-	-	-	ko00000,ko00001,ko02035	-	-	-	HAMP,MCPsignal,dCache_3
SX3_k127_5753600_4	1297865.APJD01000003_gene6212	1.293e-277	856.0	COG2244@1|root,COG2244@2|Bacteria,1MW2I@1224|Proteobacteria,2U2CQ@28211|Alphaproteobacteria,3JXUY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polysaccharide biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt
SX3_k127_5753600_22	1144305.PMI02_02611	2.527e-58	215.0	COG1216@1|root,COG1216@2|Bacteria,1MYU7@1224|Proteobacteria	1224|Proteobacteria	M	Pfam Glycosyl transferase family 2	-	-	-	-	-	-	-	-	-	-	-	-	Glycos_transf_2
SX3_k127_5753600_7	1297865.APJD01000003_gene6210	9.777e-233	721.0	2E29A@1|root,2ZAG3@2|Bacteria,1R6I1@1224|Proteobacteria,2U3VU@28211|Alphaproteobacteria,3JVEZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_9
SX3_k127_5753600_17	1297865.APJD01000003_gene6209	3.19e-93	310.0	2EQEJ@1|root,33I0I@2|Bacteria,1RG33@1224|Proteobacteria,2U867@28211|Alphaproteobacteria,3JZ8S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5753600_0	1230476.C207_05226	0.0	1384.0	COG1032@1|root,COG1032@2|Bacteria,1MUG3@1224|Proteobacteria,2TU6C@28211|Alphaproteobacteria,3JTYI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	UPF0313 protein	MA20_21630	-	-	-	-	-	-	-	-	-	-	-	DUF3362,Radical_SAM,Radical_SAM_N
SX3_k127_5753600_27	1087481.AGFX01000013_gene3067	0.0001368	47.0	2BKI8@1|root,32EZF@2|Bacteria,1TZNM@1239|Firmicutes,4I8XU@91061|Bacilli,270PJ@186822|Paenibacillaceae	91061|Bacilli	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5753600_2	1297865.APJD01000003_gene6207	1.675e-304	936.0	COG4191@1|root,COG4191@2|Bacteria,1MVK7@1224|Proteobacteria,2TR44@28211|Alphaproteobacteria,3JU63@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	regM	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA
SX3_k127_5753600_25	323098.Nwi_3076	2.326e-19	90.0	COG0230@1|root,COG0230@2|Bacteria,1NGGS@1224|Proteobacteria,2UJCE@28211|Alphaproteobacteria,3K10Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL34 family	rpmH	-	-	ko:K02914	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L34
SX3_k127_5753600_19	1297865.APJD01000003_gene6206	4.314e-79	269.0	COG0594@1|root,COG0594@2|Bacteria,1N6QY@1224|Proteobacteria,2UFAB@28211|Alphaproteobacteria,3JZJS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme	rnpA	-	3.1.26.5	ko:K03536	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Ribonuclease_P
SX3_k127_5753600_1	1297865.APJD01000003_gene6205	0.0	1270.0	COG0706@1|root,COG0706@2|Bacteria,1MV5M@1224|Proteobacteria,2TSTJ@28211|Alphaproteobacteria,3JQU3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins	yidC	GO:0002790,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032940,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944	-	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044,ko03029	2.A.9	-	-	60KD_IMP,YidC_periplas
SX3_k127_5753600_13	1297865.APJD01000003_gene6204	4.532e-136	434.0	COG0218@1|root,COG0218@2|Bacteria,1MY3Z@1224|Proteobacteria,2U5E5@28211|Alphaproteobacteria,3JTRD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Necessary for normal cell division and for the maintenance of normal septation	engB	-	-	ko:K03978	-	-	-	-	ko00000,ko03036	-	-	-	MMR_HSR1
SX3_k127_5753600_20	1297865.APJD01000003_gene6203	4.675e-66	229.0	COG2363@1|root,COG2363@2|Bacteria,1N966@1224|Proteobacteria,2UG11@28211|Alphaproteobacteria,3JZSG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF423)	MA20_21830	-	-	-	-	-	-	-	-	-	-	-	DUF423
SX3_k127_5753600_10	1297865.APJD01000003_gene6202	2.817e-185	580.0	COG0548@1|root,COG0548@2|Bacteria,1MU17@1224|Proteobacteria,2TQQS@28211|Alphaproteobacteria,3JVXI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the acetylglutamate kinase family. ArgB subfamily	argB	GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.2.8	ko:K00930	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028	R02649	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase
SX3_k127_5753600_8	1297865.APJD01000003_gene6201	4.765e-214	666.0	COG3409@1|root,COG5480@1|root,COG3409@2|Bacteria,COG5480@2|Bacteria,1P9ZA@1224|Proteobacteria,2TSTF@28211|Alphaproteobacteria,3JVQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF1036)	MA20_21840	-	-	-	-	-	-	-	-	-	-	-	DUF1036,PG_binding_1
SX3_k127_5753600_12	1297865.APJD01000003_gene6200	2.909e-152	485.0	COG1011@1|root,COG1011@2|Bacteria,1PHPQ@1224|Proteobacteria,2TUDN@28211|Alphaproteobacteria,3JQW1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	MA20_21845	-	-	ko:K07025	-	-	-	-	ko00000	-	-	-	HAD_2
SX3_k127_5753600_24	1297865.APJD01000003_gene6199	1.453e-40	150.0	COG2171@1|root,COG2171@2|Bacteria,1MU0Y@1224|Proteobacteria,2TS3H@28211|Alphaproteobacteria,3JTP8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the transferase hexapeptide repeat family	dapD	-	2.3.1.117	ko:K00674	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R04365	RC00004,RC01136	ko00000,ko00001,ko00002,ko01000	-	-	-	Hexapep,Hexapep_2,THDPS_N_2
SX3_k127_5753600_6	1230476.C207_05242	7.579e-246	760.0	COG0624@1|root,COG0624@2|Bacteria,1MW6G@1224|Proteobacteria,2TT0J@28211|Alphaproteobacteria,3JSVD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls	dapE	-	3.5.1.18	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	M00016	R02734	RC00064,RC00090	ko00000,ko00001,ko00002,ko01000	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_5753600_11	1297865.APJD01000003_gene6197	1.09e-161	511.0	COG0101@1|root,COG0101@2|Bacteria,1MUYI@1224|Proteobacteria,2TR57@28211|Alphaproteobacteria,3JRMC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs	truA	GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360	5.4.99.12	ko:K06173	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	PseudoU_synth_1
SX3_k127_5753600_9	1297865.APJD01000003_gene6196	2.951e-196	613.0	COG0223@1|root,COG0223@2|Bacteria,1MU4Q@1224|Proteobacteria,2TSWX@28211|Alphaproteobacteria,3JTIQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	fmt	GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.1.2.9	ko:K00604	ko00670,ko00970,map00670,map00970	-	R03940	RC00026,RC00165	ko00000,ko00001,ko01000	-	-	-	Formyl_trans_C,Formyl_trans_N
SX3_k127_5753600_15	1230476.C207_05245	1.137e-105	343.0	COG0242@1|root,COG0242@2|Bacteria,1RA2P@1224|Proteobacteria,2U797@28211|Alphaproteobacteria,3JTAJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	def	GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564	3.5.1.31,3.5.1.88	ko:K01450,ko:K01462	ko00270,ko00630,map00270,map00630	-	R00653	RC00165,RC00323	ko00000,ko00001,ko01000	-	-	-	Pep_deformylase
SX3_k127_5753600_5	1297865.APJD01000003_gene6194	2.724e-249	774.0	COG1322@1|root,COG1322@2|Bacteria,1MWHV@1224|Proteobacteria,2TTX6@28211|Alphaproteobacteria,3JTBH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	RmuC family	rmuC	-	-	ko:K09760	-	-	-	-	ko00000	-	-	-	RmuC
SX3_k127_5753600_23	1038860.AXAP01000061_gene2365	1.022e-47	172.0	COG2827@1|root,COG2827@2|Bacteria,1MZME@1224|Proteobacteria,2UCNX@28211|Alphaproteobacteria,3JZEM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	GIY-YIG type nucleases (URI domain)	-	-	-	ko:K07461	-	-	-	-	ko00000	-	-	-	GIY-YIG
SX3_k127_5753600_26	224911.27348962	9.054e-08	53.0	COG2050@1|root,COG2050@2|Bacteria,1R5RX@1224|Proteobacteria,2U1DZ@28211|Alphaproteobacteria,3JVKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Thioesterase-like superfamily	MA20_24410	-	-	-	-	-	-	-	-	-	-	-	4HBT_3
SX3_k127_5753600_3	1297865.APJD01000003_gene6193	1.122e-279	861.0	COG2211@1|root,COG2211@2|Bacteria,1QTSE@1224|Proteobacteria,2TWGV@28211|Alphaproteobacteria,3JS00@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Acetyl-coenzyme A transporter 1	ampG	-	-	ko:K08218	ko01501,map01501	M00628	-	-	ko00000,ko00001,ko00002,ko02000	2.A.1.25	-	-	Acatn,MFS_1
SX3_k127_5753600_18	1297865.APJD01000003_gene6192	1.47e-85	284.0	2A6QQ@1|root,30VIR@2|Bacteria,1RA40@1224|Proteobacteria,2U5HH@28211|Alphaproteobacteria,3JYFX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5753600_14	1297865.APJD01000003_gene6191	4.608e-125	400.0	COG0353@1|root,COG0353@2|Bacteria,1MV9Q@1224|Proteobacteria,2TRZM@28211|Alphaproteobacteria,3JSDW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO	recR	-	-	ko:K06187	ko03440,map03440	-	-	-	ko00000,ko00001,ko03400	-	-	-	RecR,Toprim_4
SX3_k127_5753600_21	1297865.APJD01000003_gene6190	2.313e-58	203.0	COG0718@1|root,COG0718@2|Bacteria,1RGZD@1224|Proteobacteria,2UBQB@28211|Alphaproteobacteria,3JZDC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection	ybaB	-	-	ko:K09747	-	-	-	-	ko00000	-	-	-	YbaB_DNA_bd
SX3_k127_5753600_16	1297865.APJD01000003_gene6189	3.299e-95	312.0	COG2812@1|root,COG2812@2|Bacteria,1MVCK@1224|Proteobacteria,2TRPB@28211|Alphaproteobacteria,3JS32@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	dnaX	-	2.7.7.7	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_delta2,DNA_pol3_gamma3,DUF3646
SX3_k127_5764757_10	1297865.APJD01000023_gene1038	3.384e-150	478.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JTUB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_5764757_19	113395.AXAI01000015_gene371	3.533e-23	105.0	2A99Z@1|root,30YEV@2|Bacteria,1RIIH@1224|Proteobacteria,2UA9Y@28211|Alphaproteobacteria,3JZKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2946)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2946
SX3_k127_5764757_5	1297865.APJD01000023_gene1037	1.057e-240	748.0	COG0683@1|root,COG0683@2|Bacteria,1MXR4@1224|Proteobacteria,2TU0F@28211|Alphaproteobacteria,3JUD2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_5764757_1	1297865.APJD01000023_gene1036	2.314e-320	989.0	COG0165@1|root,COG0165@2|Bacteria,1QX0N@1224|Proteobacteria,2U2RV@28211|Alphaproteobacteria,3K3XU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Argininosuccinate lyase C-terminal	-	-	-	-	-	-	-	-	-	-	-	-	ASL_C2,Lyase_1
SX3_k127_5764757_12	1297865.APJD01000023_gene1035	9.846e-128	410.0	2DKJK@1|root,309QV@2|Bacteria,1NQG1@1224|Proteobacteria,2UND5@28211|Alphaproteobacteria,3K3XE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	VPEP
SX3_k127_5764757_3	1297865.APJD01000023_gene1034	7.596e-273	843.0	COG3004@1|root,COG3004@2|Bacteria,1MW15@1224|Proteobacteria,2TSI5@28211|Alphaproteobacteria,3JX2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	) H( ) antiporter that extrudes sodium in exchange for external protons	nhaA	-	-	ko:K03313	-	-	-	-	ko00000,ko02000	2.A.33.1	-	-	Na_H_antiport_1
SX3_k127_5764757_6	1297865.APJD01000023_gene1033	4.445e-214	665.0	COG0583@1|root,COG0583@2|Bacteria,1MV0E@1224|Proteobacteria,2TT1Z@28211|Alphaproteobacteria,3JWB2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5764757_7	1297865.APJD01000023_gene1032	1.416e-212	662.0	COG0789@1|root,COG0789@2|Bacteria,1PEAD@1224|Proteobacteria,2U2BW@28211|Alphaproteobacteria,3JXHI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, mercury resistance	-	-	-	-	-	-	-	-	-	-	-	-	MerR_1
SX3_k127_5764757_9	1297865.APJD01000023_gene1031	3.056e-169	533.0	2BWZZ@1|root,2Z86E@2|Bacteria,1MW89@1224|Proteobacteria,2U08W@28211|Alphaproteobacteria,3JVIA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2927)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2927
SX3_k127_5764757_14	1297865.APJD01000023_gene1030	1.457e-122	393.0	COG1376@1|root,COG1376@2|Bacteria,1NHM3@1224|Proteobacteria,2TUPY@28211|Alphaproteobacteria,3JSDB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	L,D-transpeptidase catalytic domain	-	-	-	-	-	-	-	-	-	-	-	-	YkuD
SX3_k127_5764757_2	1297865.APJD01000023_gene1029	5.313e-311	956.0	COG0028@1|root,COG0028@2|Bacteria,1MX6Q@1224|Proteobacteria,2TR5N@28211|Alphaproteobacteria,3JR6B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	MA20_04440	-	2.2.1.6,4.1.1.7	ko:K01576,ko:K01652	ko00290,ko00627,ko00650,ko00660,ko00770,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00290,map00627,map00650,map00660,map00770,map01100,map01110,map01120,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R01764,R02672,R03050,R04672,R04673,R08648	RC00027,RC00106,RC00595,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_N
SX3_k127_5764757_15	1297865.APJD01000023_gene1028	3.815e-114	369.0	2BW8D@1|root,330YB@2|Bacteria,1QI1V@1224|Proteobacteria,2TV5Z@28211|Alphaproteobacteria,3JVX0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5764757_18	1297865.APJD01000023_gene1027	2.958e-31	126.0	2BUWN@1|root,32Q8S@2|Bacteria,1NA41@1224|Proteobacteria,2UICJ@28211|Alphaproteobacteria,3K1C3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5764757_20	1230476.C207_05455	2.786e-20	91.0	2BJX9@1|root,32E9Q@2|Bacteria,1NNN6@1224|Proteobacteria,2UJET@28211|Alphaproteobacteria,3K21Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5764757_17	1297865.APJD01000023_gene1025	5.388e-71	242.0	29WQG@1|root,30IBE@2|Bacteria,1RB80@1224|Proteobacteria,2U7XD@28211|Alphaproteobacteria,3JYTQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF4118
SX3_k127_5764757_4	1297865.APJD01000023_gene1024	2.036e-249	773.0	COG2433@1|root,COG2433@2|Bacteria,1QW6M@1224|Proteobacteria,2TWQ2@28211|Alphaproteobacteria,3JRK5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Pfam Transposase IS66	MA20_46300	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5764757_11	1297865.APJD01000023_gene1023	7.755e-129	411.0	COG5400@1|root,COG5400@2|Bacteria,1RASG@1224|Proteobacteria,2U590@28211|Alphaproteobacteria,3JSC3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1134)	MA20_46305	-	-	-	-	-	-	-	-	-	-	-	DUF1134
SX3_k127_5764757_16	1297865.APJD01000023_gene1022	1.022e-98	323.0	COG3350@1|root,COG3350@2|Bacteria,1N0GC@1224|Proteobacteria,2UBRM@28211|Alphaproteobacteria,3JXT6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YHS domain protein	-	-	-	-	-	-	-	-	-	-	-	-	YHS
SX3_k127_5764757_8	1297865.APJD01000023_gene1021	4.524e-176	552.0	COG1218@1|root,COG1218@2|Bacteria,1N0GY@1224|Proteobacteria,2TT7B@28211|Alphaproteobacteria,3JR4B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Inositol monophosphatase family	cysQ	-	3.1.3.7	ko:K01082	ko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130	-	R00188,R00508	RC00078	ko00000,ko00001,ko01000,ko03016	-	-	-	Inositol_P
SX3_k127_5764757_13	172088.AUGA01000012_gene7116	2.822e-127	410.0	COG5385@1|root,COG5385@2|Bacteria,1MVEY@1224|Proteobacteria,2TSE6@28211|Alphaproteobacteria,3JS8T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Histidine phosphotransferase C-terminal domain	MA20_46320	-	-	ko:K13588	ko02020,ko04112,map02020,map04112	-	-	-	ko00000,ko00001	-	-	-	HPTransfase
SX3_k127_5764757_0	398525.KB900701_gene1838	0.0	1471.0	COG0643@1|root,COG2198@1|root,COG0643@2|Bacteria,COG2198@2|Bacteria,1MUAG@1224|Proteobacteria,2TSN2@28211|Alphaproteobacteria,3JTYN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Function of homologous gene experimentally demonstrated in an other organism	cheA	-	2.7.13.3	ko:K03407	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035	-	-	-	CheW,H-kinase_dim,HATPase_c,Hpt,Response_reg
SX3_k127_5769237_8	1297865.APJD01000007_gene1832	6.524e-104	339.0	COG4655@1|root,COG4655@2|Bacteria,1R41B@1224|Proteobacteria,2TVD0@28211|Alphaproteobacteria,3JSXT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative Tad-like Flp pilus-assembly	-	-	-	-	-	-	-	-	-	-	-	-	Tad,Tad_C
SX3_k127_5769237_4	1297865.APJD01000007_gene1832	4.485e-188	588.0	COG4655@1|root,COG4655@2|Bacteria,1R41B@1224|Proteobacteria,2TVD0@28211|Alphaproteobacteria,3JSXT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative Tad-like Flp pilus-assembly	-	-	-	-	-	-	-	-	-	-	-	-	Tad,Tad_C
SX3_k127_5769237_10	1297865.APJD01000007_gene1831	9.744e-33	128.0	2DHFT@1|root,2ZZKE@2|Bacteria,1N0RZ@1224|Proteobacteria,2UCEH@28211|Alphaproteobacteria,3K0Y8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5769237_2	1297865.APJD01000007_gene1830	3.283e-231	715.0	COG0407@1|root,COG0407@2|Bacteria,1MUG1@1224|Proteobacteria,2TQQV@28211|Alphaproteobacteria,3JUYS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III	hemE	-	4.1.1.37	ko:K01599	ko00860,ko01100,ko01110,map00860,map01100,map01110	M00121	R03197,R04972	RC00872	ko00000,ko00001,ko00002,ko01000	-	-	-	URO-D
SX3_k127_5769237_3	1297865.APJD01000007_gene1829	1.334e-191	603.0	COG3181@1|root,COG3181@2|Bacteria,1NRAQ@1224|Proteobacteria,2UNTB@28211|Alphaproteobacteria,3K3IT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_5769237_1	1297865.APJD01000007_gene1828	0.0	1059.0	COG0318@1|root,COG0318@2|Bacteria,1MUIC@1224|Proteobacteria,2TRRZ@28211|Alphaproteobacteria,3JX1V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	6.2.1.3	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_5769237_5	1297865.APJD01000007_gene1827	9.036e-160	504.0	COG1028@1|root,COG1028@2|Bacteria,1MXVZ@1224|Proteobacteria,2U2P1@28211|Alphaproteobacteria,3JXHK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	-	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_5769237_7	1297865.APJD01000007_gene1826	5.653e-115	379.0	COG2186@1|root,COG2186@2|Bacteria,1NS1A@1224|Proteobacteria,2UNUD@28211|Alphaproteobacteria,3K2TZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_5769237_0	1297865.APJD01000007_gene1825	0.0	1113.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,3JSS3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	MA20_44990	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
SX3_k127_5769237_6	1297865.APJD01000007_gene1824	1.687e-157	500.0	COG1802@1|root,COG1802@2|Bacteria,1R7M7@1224|Proteobacteria,2U8RF@28211|Alphaproteobacteria,3K60K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_5769237_9	1297865.APJD01000007_gene1823	7.713e-67	231.0	COG2871@1|root,COG2871@2|Bacteria,1QY3P@1224|Proteobacteria,2TZT0@28211|Alphaproteobacteria,3JZH7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	2Fe-2S iron-sulfur cluster binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Fer2
SX3_k127_5769237_11	1297865.APJD01000007_gene1822	9.32e-31	121.0	COG0633@1|root,COG0633@2|Bacteria,1NAHM@1224|Proteobacteria,2UAQX@28211|Alphaproteobacteria,3JZKH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Ferredoxin	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5786554_4	1297865.APJD01000020_gene266	2.918e-108	350.0	COG1071@1|root,COG1071@2|Bacteria,1MU5R@1224|Proteobacteria,2TRSS@28211|Alphaproteobacteria,3JS9V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	pdhA	-	1.2.4.1	ko:K00161	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	M00307	R00014,R00209,R01699,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	E1_dh
SX3_k127_5786554_1	1297865.APJD01000020_gene267	4.427e-289	890.0	COG0022@1|root,COG0022@2|Bacteria,1R8KB@1224|Proteobacteria,2TRMR@28211|Alphaproteobacteria,3JQYJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	pdhB	-	1.2.4.1	ko:K00162	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	M00307	R00014,R00209,R01699,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_lipoyl,Transket_pyr,Transketolase_C
SX3_k127_5786554_5	1297865.APJD01000020_gene268	3.534e-57	205.0	2EHG6@1|root,33B82@2|Bacteria,1RJAB@1224|Proteobacteria,2U93D@28211|Alphaproteobacteria,3JZHH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF5076)	MA20_41735	-	-	-	-	-	-	-	-	-	-	-	DUF5076
SX3_k127_5786554_2	1297865.APJD01000020_gene269	5.444e-272	849.0	COG0508@1|root,COG0508@2|Bacteria,1MUGY@1224|Proteobacteria,2TRXM@28211|Alphaproteobacteria,3JRK6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	pdhC	-	1.2.4.1,2.3.1.12	ko:K00162,ko:K00627	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	M00307	R00014,R00209,R01699,R02569,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02857,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxoacid_dh,Biotin_lipoyl,E3_binding
SX3_k127_5786554_6	1297865.APJD01000020_gene270	1.916e-26	108.0	2AQNP@1|root,31FW4@2|Bacteria,1NFF2@1224|Proteobacteria,2UIT7@28211|Alphaproteobacteria,3K1ET@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5786554_0	1297865.APJD01000020_gene271	1.619e-311	956.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TR8H@28211|Alphaproteobacteria,3JR1F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	lpdA	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	1.8.1.4	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00036,M00307,M00532	R00209,R01221,R01698,R03815,R07618,R08549	RC00004,RC00022,RC00583,RC02742,RC02833,RC02834	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Pyr_redox_2,Pyr_redox_dim
SX3_k127_5786554_3	1297865.APJD01000020_gene272	2.37e-158	499.0	COG0498@1|root,COG0498@2|Bacteria,1R7X1@1224|Proteobacteria,2TUR3@28211|Alphaproteobacteria,3JU0E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	MA20_41710	-	4.2.3.1	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	M00018	R01466,R05086	RC00017,RC00526	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_5801756_5	1297865.APJD01000004_gene5325	5.23e-233	729.0	COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,2TSBB@28211|Alphaproteobacteria,3JSQT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CE	Isocitrate/isopropylmalate dehydrogenase	ttuC	-	1.1.1.83,1.1.1.93,4.1.1.73	ko:K07246	ko00630,ko00650,map00630,map00650	-	R00215,R01751,R02545,R06180	RC00084,RC00105,RC00594	ko00000,ko00001,ko01000	-	-	-	Iso_dh
SX3_k127_5801756_1	1297865.APJD01000004_gene5324	9.872e-279	859.0	COG2271@1|root,COG2271@2|Bacteria,1MUEK@1224|Proteobacteria,2TS60@28211|Alphaproteobacteria,3JR21@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	ko:K13021	-	-	-	-	ko00000,ko02000	2.A.1.14.3	-	-	MFS_1
SX3_k127_5801756_9	1297865.APJD01000004_gene5323	2.905e-188	592.0	COG0583@1|root,COG0583@2|Bacteria,1MUIX@1224|Proteobacteria,2TTHS@28211|Alphaproteobacteria,3JUNX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5801756_2	1297865.APJD01000004_gene5322	3.767e-278	863.0	COG0477@1|root,COG0477@2|Bacteria,1MX9T@1224|Proteobacteria,2U1PD@28211|Alphaproteobacteria,3JXCV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_5801756_6	1297865.APJD01000004_gene5321	2.678e-199	622.0	COG0287@1|root,COG0287@2|Bacteria,1QTZA@1224|Proteobacteria,2TS12@28211|Alphaproteobacteria,3JS3K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Prephenate dehydrogenase	tyrC	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046983,GO:0047794,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.3.1.12,1.3.1.43	ko:K00210,ko:K00220,ko:K04517	ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230	M00025,M00040	R00732,R01728	RC00125	ko00000,ko00001,ko00002,ko01000	-	-	-	PDH
SX3_k127_5801756_4	1297865.APJD01000004_gene5320	1.277e-241	746.0	COG0079@1|root,COG0079@2|Bacteria,1MW7I@1224|Proteobacteria,2TQPN@28211|Alphaproteobacteria,3JUTB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily	hisC	-	2.6.1.9	ko:K00817	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	M00026	R00694,R00734,R03243	RC00006,RC00888	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_1_2
SX3_k127_5801756_11	1297865.APJD01000004_gene5319	1.506e-164	522.0	COG1605@1|root,COG1605@2|Bacteria,1MWTP@1224|Proteobacteria,2TV3Z@28211|Alphaproteobacteria,3JTJ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Chorismate mutase type II	MA20_20425	-	-	-	-	-	-	-	-	-	-	-	CM_2
SX3_k127_5801756_3	1230476.C207_05144	1.201e-262	809.0	COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,2TQYA@28211|Alphaproteobacteria,3JR3E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine	metXA	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.1.31	ko:K00641	ko00270,ko01100,ko01130,map00270,map01100,map01130	-	R01776	RC00004,RC00041	ko00000,ko00001,ko01000	-	-	-	Abhydrolase_1
SX3_k127_5801756_12	1297865.APJD01000004_gene5317	1.979e-139	463.0	COG0500@1|root,COG2226@2|Bacteria,1MVSY@1224|Proteobacteria,2TTNQ@28211|Alphaproteobacteria,3JU9Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	methionine biosynthesis protein (MetW)	metW	-	-	-	-	-	-	-	-	-	-	-	MetW
SX3_k127_5801756_17	224911.27356098	0.0002582	46.0	COG5285@1|root,COG5285@2|Bacteria,1MWD5@1224|Proteobacteria,2U0FP@28211|Alphaproteobacteria,3JQUW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phytanoyl-CoA dioxygenase (PhyH)	MA20_06795	-	1.14.11.55	ko:K10674	ko00260,ko01120,map00260,map01120	-	R08050	RC00661	ko00000,ko00001,ko01000	-	-	-	PhyH
SX3_k127_5801756_8	1297865.APJD01000004_gene5316	9.013e-191	598.0	COG0596@1|root,COG0596@2|Bacteria,1NJ2B@1224|Proteobacteria,2TR54@28211|Alphaproteobacteria,3JQWT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	MA20_20400	-	3.4.11.5	ko:K01259	ko00330,map00330	-	R00135	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1
SX3_k127_5801756_15	172088.AUGA01000007_gene8307	9.099e-102	334.0	COG3409@1|root,COG3409@2|Bacteria,1R4RS@1224|Proteobacteria,2U0FF@28211|Alphaproteobacteria,3JYB3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	CHAP domain	-	-	-	-	-	-	-	-	-	-	-	-	CHAP
SX3_k127_5801756_7	1297865.APJD01000004_gene5314	3.066e-197	615.0	COG2815@1|root,COG4640@1|root,COG2815@2|Bacteria,COG4640@2|Bacteria,1RIP7@1224|Proteobacteria,2UFX8@28211|Alphaproteobacteria,3K2FQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YARHG	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2,YARHG
SX3_k127_5801756_10	1297865.APJD01000004_gene5313	5.466e-174	545.0	COG3217@1|root,COG3217@2|Bacteria,1MVSP@1224|Proteobacteria,2U1ST@28211|Alphaproteobacteria,3JSY4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MOSC N-terminal beta barrel domain	-	-	-	ko:K07140	-	-	-	-	ko00000	-	-	-	MOSC,MOSC_N
SX3_k127_5801756_14	1297865.APJD01000004_gene5312	2.275e-107	348.0	COG1247@1|root,COG1247@2|Bacteria,1RDNE@1224|Proteobacteria,2U9BP@28211|Alphaproteobacteria,3JVC4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	pat	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006473,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564	2.3.1.183	ko:K03823	ko00440,ko01130,map00440,map01130	-	R08871,R08938	RC00004,RC00064	ko00000,ko00001,ko01000	-	-	-	Acetyltransf_4
SX3_k127_5801756_13	398525.KB900701_gene559	1.351e-108	352.0	COG1813@1|root,COG1813@2|Bacteria,1QU3A@1224|Proteobacteria,2U38Y@28211|Alphaproteobacteria,3JVKH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HTH_3,HTH_31
SX3_k127_5801756_0	1297865.APJD01000004_gene5310	0.0	1106.0	COG0542@1|root,COG0542@2|Bacteria,1MURH@1224|Proteobacteria,2TRKI@28211|Alphaproteobacteria,3JRD0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	clpB	-	-	ko:K03695	ko04213,map04213	-	-	-	ko00000,ko00001,ko03110	-	-	-	AAA,AAA_2,ClpB_D2-small,Clp_N
SX3_k127_5815875_2	1230476.C207_00276	1.99e-207	648.0	29WMT@1|root,30I8M@2|Bacteria,1MV6X@1224|Proteobacteria,2TW15@28211|Alphaproteobacteria,3JUME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_44925	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5815875_3	1230476.C207_00274	1.542e-151	484.0	COG2324@1|root,COG2324@2|Bacteria,1RA24@1224|Proteobacteria,2U67T@28211|Alphaproteobacteria,3JYCK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carotenoid biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	Caroten_synth
SX3_k127_5815875_6	1297865.APJD01000007_gene1854	2.528e-54	196.0	2AIRC@1|root,31984@2|Bacteria,1NEQ3@1224|Proteobacteria,2UH6W@28211|Alphaproteobacteria,3K1EU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5815875_7	1230476.C207_00272	1.014e-52	188.0	2AI63@1|root,318KD@2|Bacteria,1NPDU@1224|Proteobacteria,2UNCK@28211|Alphaproteobacteria,3K1Z1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	HHH_3
SX3_k127_5815875_0	1297865.APJD01000007_gene1852	0.0	1030.0	COG1807@1|root,COG1807@2|Bacteria,1QIUU@1224|Proteobacteria,2TWT1@28211|Alphaproteobacteria,3JTS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	PMT_2
SX3_k127_5815875_4	1230476.C207_00270	2.888e-133	426.0	COG0745@1|root,COG0745@2|Bacteria,1NCKY@1224|Proteobacteria,2TRPQ@28211|Alphaproteobacteria,3JWBM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	-	-	-	-	-	-	-	-	-	-	-	-	Response_reg,Trans_reg_C
SX3_k127_5815875_9	1297865.APJD01000007_gene1849	7.905e-33	129.0	COG0642@1|root,COG0642@2|Bacteria	2|Bacteria	T	Histidine kinase	rcsD	GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009927,GO:0009987,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0031224,GO:0031226,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564	2.7.13.3	ko:K07676	ko02020,ko02026,map02020,map02026	M00474	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,Hpt,RcsD_ABL,Response_reg
SX3_k127_5815875_1	1297865.APJD01000007_gene1848	5.138e-232	721.0	COG0642@1|root,COG0642@2|Bacteria,1QTSX@1224|Proteobacteria,2TWGS@28211|Alphaproteobacteria,3K5XN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA
SX3_k127_5815875_5	1297865.APJD01000007_gene1847	3.502e-90	299.0	COG3607@1|root,COG3607@2|Bacteria,1RH1T@1224|Proteobacteria,2U7DZ@28211|Alphaproteobacteria,3JY35@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lactoylglutathione lyase	-	-	-	ko:K07032	-	-	-	-	ko00000	-	-	-	Glyoxalase
SX3_k127_5815875_8	1297865.APJD01000007_gene1846	1.932e-52	184.0	COG2267@1|root,COG2267@2|Bacteria,1MV7P@1224|Proteobacteria,2TSQ8@28211|Alphaproteobacteria,3JTGQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
SX3_k127_5856086_0	1297865.APJD01000030_gene1661	7.728e-194	605.0	COG2175@1|root,COG2175@2|Bacteria,1MVI6@1224|Proteobacteria,2TVHF@28211|Alphaproteobacteria,3JU8R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Taurine catabolism dioxygenase TauD, TfdA family	MA20_18150	-	-	ko:K06912	ko00361,ko01120,ko01220,map00361,map01120,map01220	-	R05419,R05493	RC01371,RC01372	ko00000,ko00001,ko01000	-	-	-	TauD
SX3_k127_5856086_1	1297865.APJD01000030_gene1662	1.798e-160	509.0	COG1028@1|root,COG1028@2|Bacteria,1MX8B@1224|Proteobacteria,2U26N@28211|Alphaproteobacteria,3JR5Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_18145	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_5856086_2	1297865.APJD01000030_gene1663	1.738e-147	469.0	COG1028@1|root,COG1028@2|Bacteria,1MXQR@1224|Proteobacteria,2TW65@28211|Alphaproteobacteria,3JTUA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_18140	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_5856086_4	1297865.APJD01000030_gene1664	3.219e-70	238.0	COG3237@1|root,COG3237@2|Bacteria,1RCYG@1224|Proteobacteria,2U7EZ@28211|Alphaproteobacteria,3JYUX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CsbD-like	-	-	-	-	-	-	-	-	-	-	-	-	CsbD
SX3_k127_5856086_5	224911.27348412	1.487e-11	64.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5856086_3	1297865.APJD01000030_gene1665	1.307e-135	432.0	COG2845@1|root,COG2845@2|Bacteria,1R4X7@1224|Proteobacteria,2U5AU@28211|Alphaproteobacteria,3JRNF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF459)	-	-	-	ko:K09795	-	-	-	-	ko00000	-	-	-	DUF459
SX3_k127_5856650_0	1297865.APJD01000018_gene5696	0.0	7537.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,3K3NX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	haemagglutination activity domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF3739,Haemagg_act
SX3_k127_5856650_1	1297865.APJD01000018_gene5695	2.154e-165	521.0	COG3712@1|root,COG3712@2|Bacteria,1MZCK@1224|Proteobacteria,2U5B3@28211|Alphaproteobacteria	28211|Alphaproteobacteria	PT	FecR protein	-	-	-	ko:K07165	-	-	-	-	ko00000	-	-	-	DUF4880,DUF4974,FecR
SX3_k127_58753_11	1297865.APJD01000020_gene216	5.796e-169	536.0	COG0763@1|root,COG0763@2|Bacteria,1MVBI@1224|Proteobacteria,2TSEA@28211|Alphaproteobacteria,3JUMR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxB	GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	2.4.1.182	ko:K00748	ko00540,ko01100,map00540,map01100	M00060	R04606	RC00005,RC00059	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	-	GT19	-	LpxB
SX3_k127_58753_9	1297865.APJD01000020_gene215	3.232e-175	556.0	COG3494@1|root,COG3494@2|Bacteria,1MWTH@1224|Proteobacteria,2U4AB@28211|Alphaproteobacteria,3JRR0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1009)	cdsA2	GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	-	ko:K09949	-	-	-	-	ko00000	-	-	-	DUF1009
SX3_k127_58753_10	1297865.APJD01000020_gene214	1.376e-170	544.0	COG1043@1|root,COG1043@2|Bacteria,1MUHQ@1224|Proteobacteria,2TRK9@28211|Alphaproteobacteria,3JRXY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxA	-	2.3.1.129	ko:K00677	ko00540,ko01100,ko01503,map00540,map01100,map01503	M00060	R04567	RC00039,RC00055	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Acetyltransf_11,Hexapep
SX3_k127_58753_18	1297865.APJD01000020_gene213	2.283e-63	218.0	2E9Q0@1|root,333WC@2|Bacteria,1RIQJ@1224|Proteobacteria,2U9SR@28211|Alphaproteobacteria,3JZKY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KTSC domain	-	-	-	-	-	-	-	-	-	-	-	-	KTSC
SX3_k127_58753_17	1297865.APJD01000020_gene212	6.635e-99	322.0	COG0764@1|root,COG0764@2|Bacteria,1RH2T@1224|Proteobacteria,2U7G4@28211|Alphaproteobacteria,3JUYW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs	fabZ	-	4.2.1.59	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	M00083,M00572	R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121	RC00831,RC01095	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	FabA
SX3_k127_58753_5	1297865.APJD01000020_gene211	3.056e-228	708.0	COG1044@1|root,COG1044@2|Bacteria,1MUX6@1224|Proteobacteria,2TS8U@28211|Alphaproteobacteria,3JR6V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	lpxD	-	2.3.1.191	ko:K02536	ko00540,ko01100,map00540,map01100	M00060	R04550	RC00039,RC00166	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	Hexapep,Hexapep_2,LpxD
SX3_k127_58753_1	1297865.APJD01000020_gene210	0.0	1677.0	COG4775@1|root,COG4775@2|Bacteria,1MU0D@1224|Proteobacteria,2TR7W@28211|Alphaproteobacteria,3JT8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	bamA	-	-	ko:K07277	-	-	-	-	ko00000,ko02000,ko03029	1.B.33	-	-	Bac_surface_Ag,POTRA
SX3_k127_58753_4	1297865.APJD01000020_gene209	3.605e-233	724.0	COG0750@1|root,COG0750@2|Bacteria,1MU91@1224|Proteobacteria,2TQXJ@28211|Alphaproteobacteria,3JSGZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	zinc metalloprotease	rseP	-	-	ko:K11749	ko02024,ko04112,map02024,map04112	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	PDZ_2,Peptidase_M50
SX3_k127_58753_3	1230476.C207_00890	8.473e-256	792.0	COG0743@1|root,COG0743@2|Bacteria,1MU4G@1224|Proteobacteria,2TSD1@28211|Alphaproteobacteria,3JRCU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP)	dxr	GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576	1.1.1.267	ko:K00099	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00096	R05688	RC01452	ko00000,ko00001,ko00002,ko01000	-	-	-	DXPR_C,DXP_redisom_C,DXP_reductoisom
SX3_k127_58753_21	991905.SL003B_2098	4.744e-51	193.0	COG0575@1|root,COG0575@2|Bacteria,1MWSV@1224|Proteobacteria,2U9ED@28211|Alphaproteobacteria,4BQIA@82117|unclassified Alphaproteobacteria	28211|Alphaproteobacteria	I	Cytidylyltransferase family	cdsA	-	2.7.7.41	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	M00093	R01799	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_transf_1
SX3_k127_58753_12	1230476.C207_00888	6.055e-153	488.0	COG0020@1|root,COG0020@2|Bacteria,1MVP1@1224|Proteobacteria,2TTVJ@28211|Alphaproteobacteria,3JTBS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids	uppS	GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617	2.5.1.31	ko:K00806	ko00900,ko01110,map00900,map01110	-	R06447	RC00279,RC02839	ko00000,ko00001,ko01000,ko01006	-	-	-	Prenyltransf
SX3_k127_58753_16	1297865.APJD01000020_gene205	1.584e-109	359.0	COG0233@1|root,COG0233@2|Bacteria,1N66T@1224|Proteobacteria,2U5B2@28211|Alphaproteobacteria,3JT3Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another	frr	GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576	-	ko:K02838	-	-	-	-	ko00000,ko03012	-	-	-	RRF
SX3_k127_58753_14	1297865.APJD01000020_gene204	2.678e-146	465.0	COG0528@1|root,COG0528@2|Bacteria,1MV3N@1224|Proteobacteria,2TQYN@28211|Alphaproteobacteria,3JQN8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the reversible phosphorylation of UMP to UDP	pyrH	-	2.7.4.22	ko:K09903	ko00240,ko01100,map00240,map01100	-	R00158	RC00002	ko00000,ko00001,ko01000	-	-	-	AA_kinase
SX3_k127_58753_8	1230476.C207_00885	9.283e-182	570.0	COG0264@1|root,COG0264@2|Bacteria,1MUS2@1224|Proteobacteria,2TQM0@28211|Alphaproteobacteria,3JSSW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome	tsf	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576	-	ko:K02357	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EF_TS
SX3_k127_58753_6	1230476.C207_00884	3.829e-206	659.0	COG0052@1|root,COG0052@2|Bacteria,1MU33@1224|Proteobacteria,2TRXE@28211|Alphaproteobacteria,3JQQ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the universal ribosomal protein uS2 family	rpsB	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02967	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S2
SX3_k127_58753_0	1297865.APJD01000020_gene201	0.0	2317.0	COG0587@1|root,COG0587@2|Bacteria,1MUIF@1224|Proteobacteria,2TSCN@28211|Alphaproteobacteria,3JQY6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase	dnaE	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_58753_22	1040989.AWZU01000003_gene6772	7.303e-11	63.0	2AGRZ@1|root,316ZV@2|Bacteria,1NIT3@1224|Proteobacteria,2UJVM@28211|Alphaproteobacteria,3K1SV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_58753_13	1230476.C207_00879	1.048e-148	475.0	COG3637@1|root,COG3637@2|Bacteria,1R6TJ@1224|Proteobacteria,2TTKC@28211|Alphaproteobacteria,3JUCD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	OmpA-like transmembrane domain	-	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_58753_19	1297865.APJD01000020_gene198	8.574e-59	209.0	2AITW@1|root,314K9@2|Bacteria,1NANS@1224|Proteobacteria,2UIEJ@28211|Alphaproteobacteria,3K184@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3551)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3551
SX3_k127_58753_20	1297865.APJD01000020_gene197	2.263e-54	190.0	2AEXE@1|root,314V4@2|Bacteria,1NBQG@1224|Proteobacteria,2UG8Z@28211|Alphaproteobacteria,3K0YW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3551)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3551
SX3_k127_58753_15	1297865.APJD01000020_gene196	8.166e-144	456.0	COG1136@1|root,COG1136@2|Bacteria,1MVSQ@1224|Proteobacteria,2TSBE@28211|Alphaproteobacteria,3JT8M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Part of the ABC transporter complex LolCDE involved in the translocation of	lolD	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006807,GO:0006810,GO:0008104,GO:0008150,GO:0008152,GO:0015031,GO:0015399,GO:0015405,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0022804,GO:0022857,GO:0031224,GO:0032991,GO:0033036,GO:0042157,GO:0042160,GO:0042623,GO:0042626,GO:0042886,GO:0042953,GO:0043170,GO:0043190,GO:0043492,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901564,GO:1902494,GO:1902495,GO:1904949,GO:1990351	-	ko:K09810	ko02010,map02010	M00255	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.125	-	-	ABC_tran
SX3_k127_58753_2	1297865.APJD01000020_gene195	1.202e-267	826.0	COG4591@1|root,COG4591@2|Bacteria,1MVV7@1224|Proteobacteria,2TRBX@28211|Alphaproteobacteria,3JUG9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	lipoprotein releasing system, transmembrane protein, LolC E family	lolC	-	-	ko:K09808	ko02010,map02010	M00255	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.125	-	-	FtsX,MacB_PCD
SX3_k127_58753_7	1297865.APJD01000020_gene194	2.911e-189	591.0	COG0442@1|root,COG0442@2|Bacteria,1MU7E@1224|Proteobacteria,2TQQ4@28211|Alphaproteobacteria,3JUUQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro)	proS	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	6.1.1.15	ko:K01881	ko00970,map00970	M00359,M00360	R03661	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_2b
SX3_k127_588838_12	1297865.APJD01000014_gene910	2.396e-186	584.0	COG1807@1|root,COG1807@2|Bacteria,1P6JE@1224|Proteobacteria,2TV39@28211|Alphaproteobacteria,3JQTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Dolichyl-phosphate-mannose-protein mannosyltransferase	MA20_09520	-	-	-	-	-	-	-	-	-	-	-	PMT_2
SX3_k127_588838_6	1230476.C207_00594	8.667e-249	771.0	COG0463@1|root,COG2246@1|root,COG0463@2|Bacteria,COG2246@2|Bacteria,1MV8J@1224|Proteobacteria,2TTYF@28211|Alphaproteobacteria,3JQXI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	GtrA-like protein	MA20_09515	-	2.4.1.83	ko:K00721	ko00510,ko01100,map00510,map01100	-	R01009	RC00005	ko00000,ko00001,ko01000,ko01003	-	GT2	-	Glycos_transf_2,GtrA
SX3_k127_588838_32	1230476.C207_00595	4.908e-25	107.0	2AEIW@1|root,314EC@2|Bacteria,1NA1Y@1224|Proteobacteria,2UIHI@28211|Alphaproteobacteria,3K18Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_588838_29	1230476.C207_00596	8.685e-66	226.0	2A7GU@1|root,30WEE@2|Bacteria,1RDVB@1224|Proteobacteria,2U7PX@28211|Alphaproteobacteria,3JYUK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_09505	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_588838_13	1297865.APJD01000014_gene913	8.693e-186	593.0	COG1801@1|root,COG1801@2|Bacteria,1MU7F@1224|Proteobacteria,2TT1D@28211|Alphaproteobacteria,3JRQY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function DUF72	MA20_09500	-	-	-	-	-	-	-	-	-	-	-	DUF72
SX3_k127_588838_24	1297865.APJD01000014_gene914	8.337e-96	314.0	COG5483@1|root,COG5483@2|Bacteria,1N3XQ@1224|Proteobacteria,2UCV7@28211|Alphaproteobacteria,3JY6B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function, DUF488	MA20_09495	-	-	-	-	-	-	-	-	-	-	-	DUF488
SX3_k127_588838_11	1297865.APJD01000014_gene915	2.222e-188	590.0	COG0384@1|root,COG0384@2|Bacteria,1MUAS@1224|Proteobacteria,2U3ND@28211|Alphaproteobacteria,3JTH6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phenazine biosynthesis-like protein	phzF	-	5.3.3.17	ko:K06998	ko00405,ko01130,ko02024,map00405,map01130,map02024	M00835	-	-	ko00000,ko00001,ko00002,ko01000	-	-	-	PhzC-PhzF
SX3_k127_588838_9	1297865.APJD01000014_gene916	1.753e-190	595.0	COG3618@1|root,COG3618@2|Bacteria,1R5V9@1224|Proteobacteria,2TU5F@28211|Alphaproteobacteria,3JQNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
SX3_k127_588838_4	1297865.APJD01000014_gene917	4.927e-264	818.0	COG0477@1|root,COG2814@2|Bacteria,1MWKH@1224|Proteobacteria,2U0GU@28211|Alphaproteobacteria,3JR5H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_588838_19	1230476.C207_00602	2.701e-149	473.0	COG2188@1|root,COG2188@2|Bacteria,1MUEB@1224|Proteobacteria,2TV81@28211|Alphaproteobacteria,3JTQE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	UTRA	-	-	-	ko:K03710	-	-	-	-	ko00000,ko03000	-	-	-	GntR,UTRA
SX3_k127_588838_1	1297865.APJD01000014_gene919	2.958e-282	869.0	COG2114@1|root,COG2114@2|Bacteria,1MY09@1224|Proteobacteria,2U2KA@28211|Alphaproteobacteria,3JTVH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	CHASE3,Guanylate_cyc
SX3_k127_588838_7	1297865.APJD01000014_gene920	3.783e-236	732.0	COG0842@1|root,COG0842@2|Bacteria,1MW5R@1224|Proteobacteria,2TU59@28211|Alphaproteobacteria,3JTPV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC-2 family transporter protein	MA20_09460	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_3
SX3_k127_588838_8	1297865.APJD01000014_gene921	1.706e-208	650.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TR2P@28211|Alphaproteobacteria,3JRVB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	AAA domain, putative AbiEii toxin, Type IV TA system	MA20_09455	-	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
SX3_k127_588838_18	1297865.APJD01000014_gene922	1.056e-158	514.0	COG0845@1|root,COG0845@2|Bacteria,1R3U4@1224|Proteobacteria,2TW9A@28211|Alphaproteobacteria,3JR5F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	MA20_09450	-	-	ko:K01993	-	-	-	-	ko00000	-	-	-	Biotin_lipoyl_2,HlyD_3
SX3_k127_588838_21	1297865.APJD01000014_gene923	4.061e-126	408.0	COG1309@1|root,COG1309@2|Bacteria,1MVQV@1224|Proteobacteria,2TRPA@28211|Alphaproteobacteria,3JV5D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial transcriptional repressor C-terminal	MA20_09445	-	-	-	-	-	-	-	-	-	-	-	TetR_C_11,TetR_N
SX3_k127_588838_27	1297865.APJD01000014_gene924	1.849e-80	269.0	COG0346@1|root,COG0346@2|Bacteria,1NA4J@1224|Proteobacteria,2VE9U@28211|Alphaproteobacteria,3K1XE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_588838_26	1297865.APJD01000014_gene925	4.436e-82	273.0	COG4954@1|root,COG4954@2|Bacteria,1RA4H@1224|Proteobacteria,2U5SJ@28211|Alphaproteobacteria,3JY3D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2000)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2000
SX3_k127_588838_33	172088.AUGA01000020_gene3588	1.269e-18	98.0	COG0412@1|root,COG0412@2|Bacteria,1PKGT@1224|Proteobacteria,2U0KI@28211|Alphaproteobacteria,3JX6Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Dienelactone hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_4
SX3_k127_588838_28	398525.KB900701_gene5957	8.848e-76	258.0	2EH9W@1|root,33B1S@2|Bacteria,1RCJ5@1224|Proteobacteria,2U6NV@28211|Alphaproteobacteria,3JYB0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4189)	MA20_09425	-	-	-	-	-	-	-	-	-	-	-	DUF4189
SX3_k127_588838_0	1297865.APJD01000014_gene927	0.0	1030.0	COG2068@1|root,COG2068@2|Bacteria,1MW0X@1224|Proteobacteria,2TR5D@28211|Alphaproteobacteria,3JQZ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Probable molybdopterin binding domain	MA20_09420	-	2.7.7.76	ko:K07141	ko00790,map00790	-	R11582	-	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,NTP_transf_3
SX3_k127_588838_20	1297865.APJD01000014_gene928	2.329e-141	453.0	COG1975@1|root,COG1975@2|Bacteria,1MXKU@1224|Proteobacteria,2TUF3@28211|Alphaproteobacteria,3JRUR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	XdhC Rossmann domain	MA20_09415	-	-	ko:K07402	-	-	-	-	ko00000	-	-	-	XdhC_C,XdhC_CoxI
SX3_k127_588838_30	1297865.APJD01000014_gene929	5.199e-64	219.0	COG1975@1|root,COG1975@2|Bacteria,1RI4U@1224|Proteobacteria,2U9FQ@28211|Alphaproteobacteria,3JYQ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	XdhC and CoxI family	MA20_09410	-	-	-	-	-	-	-	-	-	-	-	XdhC_CoxI
SX3_k127_588838_5	1297865.APJD01000014_gene930	2.166e-253	783.0	COG3552@1|root,COG3552@2|Bacteria,1MUHH@1224|Proteobacteria,2TSXR@28211|Alphaproteobacteria,3JT92@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	VWA domain containing CoxE-like protein	MA20_09405	-	-	ko:K07161	-	-	-	-	ko00000	-	-	-	VWA_CoxE
SX3_k127_588838_10	1297865.APJD01000014_gene931	1.195e-188	591.0	COG0714@1|root,COG0714@2|Bacteria,1MV5I@1224|Proteobacteria,2TREB@28211|Alphaproteobacteria,3JTZT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain (dynein-related subfamily)	MA20_09400	-	-	-	-	-	-	-	-	-	-	-	AAA_5
SX3_k127_588838_16	1297865.APJD01000014_gene932	4.342e-166	524.0	COG1319@1|root,COG1319@2|Bacteria,1MUDB@1224|Proteobacteria,2TRA8@28211|Alphaproteobacteria,3JQQE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CO dehydrogenase flavoprotein C-terminal domain	coxM	-	1.2.5.3	ko:K03519	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
SX3_k127_588838_22	189753.AXAS01000033_gene2831	2.723e-104	342.0	COG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U5BM@28211|Alphaproteobacteria,3JRGQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	[2Fe-2S] binding domain	MA20_09390	-	1.2.5.3	ko:K03518	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Fer2,Fer2_2
SX3_k127_588838_25	1230476.C207_00617	5.401e-90	297.0	COG3427@1|root,COG3427@2|Bacteria,1RHUC@1224|Proteobacteria,2U9HD@28211|Alphaproteobacteria,3JTDF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carbon monoxide dehydrogenase subunit G (CoxG)	MA20_09385	-	-	ko:K09386	-	-	-	-	ko00000	-	-	-	COXG
SX3_k127_588838_3	1297865.APJD01000014_gene935	2.185e-266	836.0	COG0015@1|root,COG0015@2|Bacteria,1MXNN@1224|Proteobacteria,2TRCE@28211|Alphaproteobacteria,3JT32@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Adenylosuccinate lyase C-terminus	MA20_09380	-	5.5.1.2	ko:K01857	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R03307	RC00902	ko00000,ko00001,ko01000	-	-	-	ADSL_C,Lyase_1
SX3_k127_588838_15	1297865.APJD01000014_gene936	7.222e-172	540.0	COG0596@1|root,COG0596@2|Bacteria,1QTTN@1224|Proteobacteria,2TRYE@28211|Alphaproteobacteria,3JRD7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Serine aminopeptidase, S33	MA20_09375	-	3.1.1.24	ko:K01055	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	M00568	R02991	RC00825	ko00000,ko00001,ko00002,ko01000	-	-	-	Abhydrolase_1
SX3_k127_588838_31	392499.Swit_1070	2.485e-40	153.0	COG0596@1|root,COG0599@1|root,COG0596@2|Bacteria,COG0599@2|Bacteria,1QTTN@1224|Proteobacteria,2TRYE@28211|Alphaproteobacteria,2K39I@204457|Sphingomonadales	204457|Sphingomonadales	S	Serine aminopeptidase, S33	-	-	3.1.1.24,4.1.1.44	ko:K01055,ko:K14727	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	M00568	R02991,R03470	RC00825,RC00938	ko00000,ko00001,ko00002,ko01000	-	-	-	Abhydrolase_1,CMD
SX3_k127_588838_23	1297865.APJD01000014_gene938	6.256e-98	321.0	2A47B@1|root,30SSI@2|Bacteria,1MUTD@1224|Proteobacteria,2U347@28211|Alphaproteobacteria,3JVQY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_588838_14	1297865.APJD01000014_gene939	1.401e-182	572.0	COG0559@1|root,COG0559@2|Bacteria,1MU25@1224|Proteobacteria,2TSDS@28211|Alphaproteobacteria,3JT5S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	livH	GO:0003333,GO:0003674,GO:0005215,GO:0005304,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015173,GO:0015175,GO:0015179,GO:0015188,GO:0015190,GO:0015192,GO:0015238,GO:0015318,GO:0015658,GO:0015711,GO:0015801,GO:0015803,GO:0015804,GO:0015807,GO:0015818,GO:0015820,GO:0015823,GO:0015829,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0042221,GO:0042493,GO:0043090,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0089718,GO:0098655,GO:0098656,GO:0098657,GO:0098713,GO:0098739,GO:1902475,GO:1903714,GO:1903785,GO:1903825,GO:1905039	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_588838_2	1297865.APJD01000014_gene940	8.647e-280	862.0	COG4177@1|root,COG4177@2|Bacteria,1MV66@1224|Proteobacteria,2TSJQ@28211|Alphaproteobacteria,3JQQ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	livM	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2,DUF3382
SX3_k127_588838_17	1297865.APJD01000014_gene941	4.39e-160	516.0	COG0411@1|root,COG0411@2|Bacteria,1MUTY@1224|Proteobacteria,2TQK1@28211|Alphaproteobacteria,3JS3Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	braF	GO:0003333,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0015711,GO:0015803,GO:0015804,GO:0015807,GO:0015808,GO:0015818,GO:0015829,GO:0015849,GO:0015893,GO:0032328,GO:0034220,GO:0042221,GO:0042493,GO:0042940,GO:0042941,GO:0043090,GO:0046942,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0089718,GO:0098655,GO:0098656,GO:0098657,GO:0098739,GO:1902475,GO:1903714,GO:1903785,GO:1903805,GO:1903806,GO:1903825,GO:1905039	3.5.4.44	ko:K01995,ko:K15783	ko00260,ko01100,ko02010,ko02024,map00260,map01100,map02010,map02024	M00237	R09800	RC02661	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_5893058_1	1297865.APJD01000005_gene3647	6.509e-309	945.0	COG1032@1|root,COG1032@2|Bacteria,1MY2Y@1224|Proteobacteria,2TUIT@28211|Alphaproteobacteria,3JUXS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Domain of unknown function (DUF4070)	MA20_16100	-	-	-	-	-	-	-	-	-	-	-	B12-binding,DUF4070,Radical_SAM
SX3_k127_5893058_6	1297865.APJD01000005_gene3648	7.523e-160	506.0	COG4302@1|root,COG4302@2|Bacteria,1MWQI@1224|Proteobacteria,2U5EU@28211|Alphaproteobacteria,3JUDK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the EutC family	eutC	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0009350,GO:0019842,GO:0031419,GO:0032991,GO:0036094,GO:0044424,GO:0044464,GO:0046906,GO:0048037,GO:0097159,GO:1901363,GO:1902494	4.3.1.7	ko:K03736	ko00564,ko01100,map00564,map01100	-	R00749	RC00370	ko00000,ko00001,ko01000	-	-	-	EutC
SX3_k127_5893058_0	1297865.APJD01000005_gene3649	0.0	1517.0	COG1033@1|root,COG1033@2|Bacteria,1MUE1@1224|Proteobacteria,2TRI9@28211|Alphaproteobacteria,3JR7Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MMPL family	MA20_16090	-	-	ko:K07003	-	-	-	-	ko00000	-	-	-	MMPL
SX3_k127_5893058_7	1230476.C207_05599	2.845e-93	308.0	2C2M3@1|root,316DE@2|Bacteria,1R7TZ@1224|Proteobacteria,2UB1Y@28211|Alphaproteobacteria,3JY7G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_16080	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5893058_8	172088.AUGA01000024_gene875	2.231e-39	147.0	2BSH8@1|root,32MJH@2|Bacteria,1N1EH@1224|Proteobacteria,2UC6G@28211|Alphaproteobacteria,3K04P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_16070	-	-	-	-	-	-	-	-	-	-	-	Cys_rich_FGFR
SX3_k127_5893058_4	1297865.APJD01000005_gene3652	1.069e-185	581.0	COG1562@1|root,COG1562@2|Bacteria,1N6J2@1224|Proteobacteria,2TT8U@28211|Alphaproteobacteria,3JQW6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Squalene/phytoene synthase	hpnC	-	2.5.1.103,4.2.3.156	ko:K21678,ko:K21679	-	-	-	-	ko00000,ko01000	-	-	-	SQS_PSY
SX3_k127_5893058_5	1297865.APJD01000005_gene3653	1.609e-173	555.0	COG1562@1|root,COG1562@2|Bacteria,1MX4W@1224|Proteobacteria,2TTI0@28211|Alphaproteobacteria,3JUXY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Squalene/phytoene synthase	hpnD	-	2.5.1.103,2.5.1.32,2.5.1.99	ko:K02291,ko:K21678	ko00906,ko01062,ko01100,ko01110,map00906,map01062,map01100,map01110	M00097	R02065,R04218,R07270,R10177	RC00362,RC01101,RC02869	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	SQS_PSY
SX3_k127_5893058_2	1297865.APJD01000005_gene3654	1.357e-270	838.0	COG1233@1|root,COG1233@2|Bacteria,1QU52@1224|Proteobacteria,2TW02@28211|Alphaproteobacteria,3JU29@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Flavin containing amine oxidoreductase	MA20_16055	-	1.17.8.1	ko:K21677	-	-	-	-	ko00000,ko01000	-	-	-	Amino_oxidase
SX3_k127_5893058_3	1297865.APJD01000005_gene3655	2.078e-203	636.0	COG1657@1|root,COG1657@2|Bacteria,1MUIP@1224|Proteobacteria,2TRF3@28211|Alphaproteobacteria,3JRDS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Squalene-hopene cyclase C-terminal domain	shc	-	4.2.1.129,5.4.99.17	ko:K06045	ko00909,ko01110,map00909,map01110	-	R07322,R07323	RC01850,RC01851	ko00000,ko00001,ko01000	-	-	-	SQHop_cyclase_C,SQHop_cyclase_N
SX3_k127_5928428_8	1297865.APJD01000019_gene3096	2.028e-125	404.0	COG2821@1|root,COG2821@2|Bacteria,1MXD4@1224|Proteobacteria,2TS5S@28211|Alphaproteobacteria,3JTB1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	MltA specific insert domain	mltA	-	-	ko:K08304	-	-	-	-	ko00000,ko01000,ko01011	-	GH102	-	3D,MltA
SX3_k127_5928428_6	1297865.APJD01000019_gene3097	2.493e-145	462.0	COG4395@1|root,COG4395@2|Bacteria,1NCIX@1224|Proteobacteria,2TTDQ@28211|Alphaproteobacteria,3JRPF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tim44	MA20_24770	-	-	-	-	-	-	-	-	-	-	-	Tim44
SX3_k127_5928428_11	1297865.APJD01000019_gene3098	6.177e-99	324.0	COG1952@1|root,COG1952@2|Bacteria,1RI75@1224|Proteobacteria,2UBTB@28211|Alphaproteobacteria,3JVEB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA	secB	GO:0002790,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705	-	ko:K03071	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044,ko03110	3.A.5	-	-	SecB
SX3_k127_5928428_5	1297865.APJD01000019_gene3099	2.502e-150	487.0	COG0847@1|root,COG0847@2|Bacteria,1MV8Z@1224|Proteobacteria,2TTFF@28211|Alphaproteobacteria,3JR18@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	dnaQ	-	2.7.7.7	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	RNase_T
SX3_k127_5928428_10	1297865.APJD01000019_gene3100	5.212e-118	381.0	COG0237@1|root,COG0237@2|Bacteria,1RCXT@1224|Proteobacteria,2U765@28211|Alphaproteobacteria,3JQTC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A	coaE	GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.1.24	ko:K00859	ko00770,ko01100,map00770,map01100	M00120	R00130	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	CoaE
SX3_k127_5928428_9	1297865.APJD01000019_gene3101	8.089e-122	392.0	COG0424@1|root,COG0424@2|Bacteria,1RDA9@1224|Proteobacteria,2U9H5@28211|Alphaproteobacteria,3JUS3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Maf-like protein	maf	-	-	ko:K06287	-	-	-	-	ko00000	-	-	-	Maf
SX3_k127_5928428_3	1297865.APJD01000019_gene3102	1.405e-175	551.0	COG1806@1|root,COG1806@2|Bacteria,1MUHU@1224|Proteobacteria,2TT66@28211|Alphaproteobacteria,3JUGI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation	MA20_24795	-	2.7.11.33,2.7.4.28	ko:K09773	-	-	-	-	ko00000,ko01000	-	-	-	Kinase-PPPase
SX3_k127_5928428_12	1297865.APJD01000019_gene3103	6.132e-87	289.0	COG1981@1|root,COG1981@2|Bacteria,1RHGS@1224|Proteobacteria,2U987@28211|Alphaproteobacteria,3JY1X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein family (UPF0093)	MA20_24805	-	-	ko:K08973	-	-	-	-	ko00000	-	-	-	UPF0093
SX3_k127_5928428_1	172088.AUGA01000016_gene2497	1.482e-271	839.0	COG1158@1|root,COG1158@2|Bacteria,1MUCF@1224|Proteobacteria,2TRB4@28211|Alphaproteobacteria,3JQY5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template	rho	-	-	ko:K03628	ko03018,map03018	-	-	-	ko00000,ko00001,ko03019,ko03021	-	-	-	ATP-synt_ab,Rho_N,Rho_RNA_bind
SX3_k127_5928428_2	1297865.APJD01000019_gene3105	6.577e-254	786.0	COG0486@1|root,COG0486@2|Bacteria,1MUCQ@1224|Proteobacteria,2TQZW@28211|Alphaproteobacteria,3JV1K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34	mnmE	-	-	ko:K03650	-	-	R08701	RC00053,RC00209,RC00870	ko00000,ko01000,ko03016	-	-	-	MMR_HSR1,MnmE_helical,TrmE_N
SX3_k127_5928428_0	1230476.C207_04013	0.0	1189.0	COG0445@1|root,COG0445@2|Bacteria,1MU6F@1224|Proteobacteria,2TRJS@28211|Alphaproteobacteria,3JTAX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34	gidA	GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363	-	ko:K03495	-	-	R08701	RC00053,RC00209,RC00870	ko00000,ko03016,ko03036	-	-	-	GIDA,GIDA_assoc
SX3_k127_5928428_7	172088.AUGA01000016_gene2493	3.765e-126	406.0	COG0357@1|root,COG0357@2|Bacteria,1MY0K@1224|Proteobacteria,2U9T9@28211|Alphaproteobacteria,3JQQP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Specifically methylates the N7 position of guanine in position 527 of 16S rRNA	rsmG	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.170	ko:K03501	-	-	-	-	ko00000,ko01000,ko03009,ko03036	-	-	-	GidB
SX3_k127_5928428_4	1297865.APJD01000019_gene3107	9.426e-154	488.0	COG1192@1|root,COG1192@2|Bacteria,1MV43@1224|Proteobacteria,2TSWH@28211|Alphaproteobacteria,3JRXN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Cellulose biosynthesis protein BcsQ	parA	-	-	ko:K03496	-	-	-	-	ko00000,ko03036,ko04812	-	-	-	AAA_31
SX3_k127_5930070_2	1297865.APJD01000020_gene158	3.029e-174	547.0	COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,2TUMX@28211|Alphaproteobacteria,3JTYX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_5930070_1	1297865.APJD01000020_gene159	6.055e-271	839.0	COG2271@1|root,COG2271@2|Bacteria,1MWYR@1224|Proteobacteria,2TSXW@28211|Alphaproteobacteria,3JTZP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Transmembrane secretion effector	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_5930070_0	1297865.APJD01000020_gene160	9.955e-278	853.0	COG4638@1|root,COG4638@2|Bacteria,1MX47@1224|Proteobacteria,2TV3I@28211|Alphaproteobacteria,3JS2U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske [2Fe-2S] domain	-	-	1.14.13.229,1.14.19.48	ko:K21323	-	-	-	-	ko00000,ko01000	-	-	-	Rieske,Ring_hydroxyl_A
SX3_k127_5930070_3	1297865.APJD01000020_gene161	1.748e-97	320.0	COG1846@1|root,COG1846@2|Bacteria,1R6ZW@1224|Proteobacteria,2U1UE@28211|Alphaproteobacteria,3JX7K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR_2
SX3_k127_5930070_4	196490.AUEZ01000022_gene917	3.698e-15	77.0	COG0838@1|root,COG0838@2|Bacteria,1RGUT@1224|Proteobacteria,2U72Q@28211|Alphaproteobacteria,3JYST@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	nuoA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.6.5.3	ko:K00330	ko00190,ko01100,map00190,map01100	M00144	R11945	RC00061	ko00000,ko00001,ko00002,ko01000	3.D.1	-	-	Oxidored_q4
SX3_k127_5930658_2	1297865.APJD01000011_gene6874	1.153e-183	575.0	COG2244@1|root,COG2244@2|Bacteria,1MWKV@1224|Proteobacteria,2TTYS@28211|Alphaproteobacteria,3JSUH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polysaccharide biosynthesis protein	MA20_18165	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt,Polysacc_synt_C
SX3_k127_5930658_8	1297865.APJD01000011_gene6873	1.506e-79	266.0	COG3686@1|root,COG3686@2|Bacteria,1N00R@1224|Proteobacteria,2U94Y@28211|Alphaproteobacteria,3K17B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MAPEG family	-	-	-	-	-	-	-	-	-	-	-	-	MAPEG
SX3_k127_5930658_3	1297865.APJD01000011_gene6872	2.097e-164	518.0	COG1028@1|root,COG1028@2|Bacteria,1MU5Y@1224|Proteobacteria,2TRNQ@28211|Alphaproteobacteria,3JRK8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_18175	-	1.1.1.30	ko:K00019	ko00072,ko00650,ko01100,map00072,map00650,map01100	M00088	R01361	RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short_C2
SX3_k127_5930658_0	1297865.APJD01000011_gene6871	2.013e-257	794.0	COG1752@1|root,COG1752@2|Bacteria,1MVHW@1224|Proteobacteria,2TS4V@28211|Alphaproteobacteria,3JT6B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Patatin phospholipase	MA20_18180	-	-	ko:K07001	-	-	-	-	ko00000	-	-	-	DUF3734,Patatin
SX3_k127_5930658_6	1297865.APJD01000011_gene6870	2.328e-103	338.0	COG2340@1|root,COG2340@2|Bacteria,1MZ84@1224|Proteobacteria,2UFSP@28211|Alphaproteobacteria,3JVHE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cysteine-rich secretory protein family	MA20_18185	-	-	-	-	-	-	-	-	-	-	-	CAP
SX3_k127_5930658_7	1297865.APJD01000011_gene6869	2.916e-100	335.0	COG4319@1|root,COG4319@2|Bacteria,1R7CB@1224|Proteobacteria,2U49V@28211|Alphaproteobacteria,3JUE2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_3
SX3_k127_5930658_1	1297865.APJD01000011_gene6868	1.559e-225	700.0	COG1118@1|root,COG1118@2|Bacteria,1QTTT@1224|Proteobacteria,2TVZ3@28211|Alphaproteobacteria,3JTDA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system	cysA	-	3.6.3.25	ko:K02045	ko00920,ko02010,map00920,map02010	M00185	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.6.1,3.A.1.6.3	-	-	ABC_tran,TOBE_3
SX3_k127_5930658_5	1038858.AXBA01000022_gene3647	1.939e-117	386.0	COG4208@1|root,COG4208@2|Bacteria,1MV8X@1224|Proteobacteria,2TQR8@28211|Alphaproteobacteria,3EXWK@335928|Xanthobacteraceae	28211|Alphaproteobacteria	P	sulfate ABC transporter	cysW	-	-	ko:K02047	ko00920,ko02010,map00920,map02010	M00185	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.6.1,3.A.1.6.3	-	-	BPD_transp_1
SX3_k127_5930658_4	1297865.APJD01000011_gene6866	2.225e-157	501.0	COG0555@1|root,COG0555@2|Bacteria,1QTTU@1224|Proteobacteria,2TTET@28211|Alphaproteobacteria,3JT44@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Binding-protein-dependent transport system inner membrane component	cysT	-	-	ko:K02046	ko00920,ko02010,map00920,map02010	M00185	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.6.1,3.A.1.6.3	-	-	BPD_transp_1
SX3_k127_5930658_9	1297865.APJD01000011_gene6865	8.537e-24	100.0	COG1613@1|root,COG1613@2|Bacteria,1MUAU@1224|Proteobacteria,2TT52@28211|Alphaproteobacteria,3JRVZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial extracellular solute-binding protein	sbp	-	-	ko:K02048	ko00920,ko02010,map00920,map02010	M00185	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.6.1,3.A.1.6.3	-	-	SBP_bac_11
SX3_k127_5938691_5	1297865.APJD01000023_gene1177	4.857e-35	136.0	2AP5M@1|root,31E78@2|Bacteria,1P5TD@1224|Proteobacteria,2UYTG@28211|Alphaproteobacteria,3K5ME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5938691_3	1297865.APJD01000023_gene1178	5.585e-150	475.0	2E2N0@1|root,32XR5@2|Bacteria,1RK4V@1224|Proteobacteria,2U9ND@28211|Alphaproteobacteria,3K43C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alginate O-acetyl transferase AlgF	-	-	-	-	-	-	-	-	-	-	-	-	AlgF
SX3_k127_5938691_0	1297865.APJD01000023_gene1179	6.096e-310	949.0	COG1696@1|root,COG1696@2|Bacteria,1MUXN@1224|Proteobacteria,2TRD1@28211|Alphaproteobacteria,3JS5U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	MBOAT, membrane-bound O-acyltransferase family	algI	-	-	ko:K19294	-	-	-	-	ko00000	-	-	-	MBOAT
SX3_k127_5938691_1	1297865.APJD01000023_gene1180	5.846e-229	709.0	2DMHN@1|root,32RMC@2|Bacteria,1N2G3@1224|Proteobacteria,2UBJC@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	SGNH hydrolase-like domain, acetyltransferase AlgX	-	-	-	ko:K19295	-	-	-	-	ko00000	-	-	-	ALGX
SX3_k127_5938691_2	1297865.APJD01000023_gene1181	4.785e-201	627.0	2DBT0@1|root,2ZAUI@2|Bacteria,1R52N@1224|Proteobacteria,2U208@28211|Alphaproteobacteria,3K2GQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SGNH hydrolase-like domain, acetyltransferase AlgX	-	-	-	ko:K19295	-	-	-	-	ko00000	-	-	-	ALGX
SX3_k127_5938691_4	1297865.APJD01000023_gene1182	1.48e-119	387.0	COG0457@1|root,COG0457@2|Bacteria,1QQUW@1224|Proteobacteria,2U4RF@28211|Alphaproteobacteria,3JWTZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacteriophage N adsorption protein A C-term	-	-	-	-	-	-	-	-	-	-	-	-	NfrA_C,TPR_16,TPR_19,TPR_8
SX3_k127_5948775_1	1297863.APJF01000011_gene1487	3.089e-114	372.0	COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,2TS39@28211|Alphaproteobacteria,3JSDA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Biotin-lipoyl like	-	-	-	ko:K03543	-	M00701	-	-	ko00000,ko00002,ko02000	8.A.1.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_5948775_0	1297865.APJD01000028_gene5181	7.61e-299	923.0	COG0477@1|root,COG0477@2|Bacteria,1QTUX@1224|Proteobacteria,2TTN1@28211|Alphaproteobacteria,3JTZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	ko:K03446	-	M00701	-	-	ko00000,ko00002,ko02000	2.A.1.3	-	-	MFS_1
SX3_k127_5978800_5	1297865.APJD01000012_gene1303	1.915e-187	589.0	COG0142@1|root,COG0142@2|Bacteria,1MWNG@1224|Proteobacteria,2TR79@28211|Alphaproteobacteria,3JTEJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the FPP GGPP synthase family	ispA	GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009536,GO:0009842,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033385,GO:0033386,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0090407,GO:1901576	2.5.1.1,2.5.1.10	ko:K00795	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	M00364	R01658,R02003	RC00279	ko00000,ko00001,ko00002,ko01000,ko01006	-	-	-	polyprenyl_synt
SX3_k127_5978800_13	1297865.APJD01000012_gene1304	5.216e-136	434.0	COG0744@1|root,COG0744@2|Bacteria,1RDAQ@1224|Proteobacteria,2U0NP@28211|Alphaproteobacteria,3JR05@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors	mtgA	-	2.4.1.129	ko:K03814	ko00550,map00550	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	Transgly
SX3_k127_5978800_18	1230476.C207_03747	2.788e-29	125.0	COG0333@1|root,COG0333@2|Bacteria,1PU3Y@1224|Proteobacteria,2UF54@28211|Alphaproteobacteria,3K11R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the bacterial ribosomal protein bL32 family	rpmF	-	-	ko:K02911	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	-	-	-	Ribosomal_L32p
SX3_k127_5978800_15	1297865.APJD01000012_gene1306	4.31e-116	375.0	2E6XE@1|root,331GU@2|Bacteria,1N7WP@1224|Proteobacteria,2UG23@28211|Alphaproteobacteria,3JU4T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5978800_17	1297865.APJD01000012_gene1307	1.236e-54	192.0	2ACTQ@1|root,312EK@2|Bacteria,1N3H8@1224|Proteobacteria,2UDFE@28211|Alphaproteobacteria,3K054@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5978800_1	1297865.APJD01000012_gene1308	0.0	1119.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2UP6H@28211|Alphaproteobacteria,3K6M6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,PAS_3
SX3_k127_5978800_4	1297865.APJD01000012_gene1309	2.069e-195	611.0	COG0583@1|root,COG0583@2|Bacteria,1PX1B@1224|Proteobacteria,2TUE7@28211|Alphaproteobacteria,3JV4U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5978800_12	1297865.APJD01000012_gene1310	1.852e-139	443.0	COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,2U5B6@28211|Alphaproteobacteria,3JWH3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	maiA	-	5.2.1.2	ko:K01800	ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120	M00044	R03181	RC00867	ko00000,ko00001,ko00002,ko01000	-	-	-	GST_C_3,GST_N,GST_N_3
SX3_k127_5978800_2	398525.KB900701_gene1241	0.0	1020.0	COG2421@1|root,COG2421@2|Bacteria,1MXKY@1224|Proteobacteria,2TSAU@28211|Alphaproteobacteria,3JSW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CK	Acetamidase/Formamidase family	MA20_29860	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,FmdA_AmdA,HTH_18
SX3_k127_5978800_0	1297865.APJD01000012_gene1312	0.0	1604.0	COG2207@1|root,COG2421@1|root,COG2207@2|Bacteria,COG2421@2|Bacteria,1MXKY@1224|Proteobacteria,2TSAU@28211|Alphaproteobacteria,3JSW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CK	Acetamidase/Formamidase family	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,FmdA_AmdA,HTH_18
SX3_k127_5978800_14	1297865.APJD01000012_gene1313	9.672e-121	388.0	COG5394@1|root,COG5394@2|Bacteria,1RHRC@1224|Proteobacteria,2TQWQ@28211|Alphaproteobacteria,3JS9S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polyhydroxyalkanoate synthesis repressor	phaR	-	-	-	-	-	-	-	-	-	-	-	PHB_acc,PHB_acc_N
SX3_k127_5978800_3	1297865.APJD01000012_gene1314	3.047e-249	770.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,3JRMV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	phbA	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_5978800_11	1230476.C207_06975	8.148e-147	466.0	COG1028@1|root,COG1028@2|Bacteria,1MUEV@1224|Proteobacteria,2TRCF@28211|Alphaproteobacteria,3JQSI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	phbB	-	1.1.1.36	ko:K00023	ko00630,ko00650,ko01120,ko01200,map00630,map00650,map01120,map01200	M00373	R01779,R01977	RC00103,RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short_C2
SX3_k127_5978800_7	1297865.APJD01000012_gene1316	9.846e-174	546.0	COG0697@1|root,COG0697@2|Bacteria,1MVGC@1224|Proteobacteria,2TS6Y@28211|Alphaproteobacteria,3JV1U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_39610	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_5978800_16	1297865.APJD01000012_gene1317	7.563e-94	312.0	COG3542@1|root,COG3542@2|Bacteria,1RHBE@1224|Proteobacteria,2U962@28211|Alphaproteobacteria,3JYGA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin superfamily (DUF985)	MA20_39615	-	-	ko:K09705	-	-	-	-	ko00000	-	-	-	Cupin_5
SX3_k127_5978800_8	1297865.APJD01000012_gene1318	6.466e-166	523.0	COG0491@1|root,COG0491@2|Bacteria,1MU8Q@1224|Proteobacteria,2TSVS@28211|Alphaproteobacteria,3JRGJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid	gloB	-	3.1.2.6	ko:K01069	ko00620,map00620	-	R01736	RC00004,RC00137	ko00000,ko00001,ko01000	-	-	-	HAGH_C,Lactamase_B
SX3_k127_5978800_9	1297865.APJD01000012_gene1319	1.393e-161	515.0	COG0500@1|root,COG2226@2|Bacteria,1NA7K@1224|Proteobacteria,2TT7T@28211|Alphaproteobacteria,3JT80@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methyltransferase domain	MA20_39625	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_5978800_19	114615.BRADO3920	3.196e-06	50.0	COG4953@1|root,COG4953@2|Bacteria,1MUA9@1224|Proteobacteria,2TR2R@28211|Alphaproteobacteria,3JS2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-Binding Protein C-terminus Family	pbpC	-	2.4.1.129	ko:K05367	ko00550,map00550	-	-	-	ko00000,ko00001,ko01000,ko01003,ko01011	-	GT51	-	BiPBP_C,Transgly,Transpeptidase
SX3_k127_5978800_10	1297865.APJD01000012_gene1320	1.89e-147	469.0	COG5373@1|root,COG5373@2|Bacteria,1N7JV@1224|Proteobacteria,2TR7A@28211|Alphaproteobacteria,3JRVV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4167)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4167
SX3_k127_5978800_6	1297865.APJD01000012_gene1321	6.105e-182	570.0	COG2890@1|root,COG2890@2|Bacteria,1MXCQ@1224|Proteobacteria,2TZFK@28211|Alphaproteobacteria,3JUFB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif	prmC	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564	2.1.1.297	ko:K02493	-	-	R10806	RC00003,RC03279	ko00000,ko01000,ko03012	-	-	-	MTS,Methyltransf_31
SX3_k127_5979555_0	1297865.APJD01000003_gene6381	0.0	1028.0	COG0554@1|root,COG0554@2|Bacteria,1MUP7@1224|Proteobacteria,2TRD7@28211|Alphaproteobacteria,3JSAS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate	glpK	GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615	2.7.1.30	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	-	R00847	RC00002,RC00017	ko00000,ko00001,ko01000,ko04147	-	-	-	FGGY_C,FGGY_N
SX3_k127_5979555_7	1297865.APJD01000003_gene6380	1.244e-199	626.0	COG2755@1|root,COG2755@2|Bacteria,1MWPZ@1224|Proteobacteria,2TSYR@28211|Alphaproteobacteria,3JQZT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GDSL-like Lipase/Acylhydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
SX3_k127_5979555_11	1297865.APJD01000003_gene6379	1.496e-158	504.0	COG2755@1|root,COG2755@2|Bacteria,1R505@1224|Proteobacteria,2TT25@28211|Alphaproteobacteria,3JQYE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	lipolytic protein G-D-S-L family	-	-	-	-	-	-	-	-	-	-	-	-	Lipase_GDSL_2
SX3_k127_5979555_1	1297865.APJD01000003_gene6378	2.689e-272	842.0	COG4645@1|root,COG4645@2|Bacteria,1PI9Q@1224|Proteobacteria,2U1C7@28211|Alphaproteobacteria,3JQY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	OpgC protein	MA20_22360	-	-	-	-	-	-	-	-	-	-	-	OpgC_C
SX3_k127_5979555_15	1297865.APJD01000003_gene6377	9.898e-88	295.0	COG2967@1|root,COG2967@2|Bacteria,1MZ2Z@1224|Proteobacteria,2U9JM@28211|Alphaproteobacteria,3JY59@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ApaG domain	apaG	-	-	ko:K06195	-	-	-	-	ko00000	-	-	-	DUF525
SX3_k127_5979555_4	1297865.APJD01000003_gene6376	1.349e-217	675.0	COG1281@1|root,COG1281@2|Bacteria,1MUMU@1224|Proteobacteria,2TTUR@28211|Alphaproteobacteria,3JTPI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress	hslO	-	-	ko:K04083	-	-	-	-	ko00000,ko03110	-	-	-	HSP33
SX3_k127_5979555_8	1297865.APJD01000003_gene6375	5.606e-197	634.0	COG0078@1|root,COG0078@2|Bacteria,1MUFM@1224|Proteobacteria,2TR81@28211|Alphaproteobacteria,3JS5V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	argF	GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.1.3.3	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	M00029,M00844	R01398	RC00096	ko00000,ko00001,ko00002,ko01000	-	-	-	OTCace,OTCace_N
SX3_k127_5979555_2	1297865.APJD01000003_gene6374	9.586e-262	807.0	COG4992@1|root,COG4992@2|Bacteria,1MV3C@1224|Proteobacteria,2TSGT@28211|Alphaproteobacteria,3JRG7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-III	argD	GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363	2.6.1.11,2.6.1.17	ko:K00821	ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00028,M00845	R02283,R04475	RC00006,RC00062	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
SX3_k127_5979555_14	1297865.APJD01000003_gene6373	3.027e-104	347.0	COG5352@1|root,COG5352@2|Bacteria,1RHI6@1224|Proteobacteria,2TS7F@28211|Alphaproteobacteria,3JSUB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GcrA cell cycle regulator	gcrA	-	-	ko:K13583	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	GcrA
SX3_k127_5979555_12	1230476.C207_02747	3.122e-151	479.0	COG0745@1|root,COG0745@2|Bacteria,1MY2Z@1224|Proteobacteria,2TRFZ@28211|Alphaproteobacteria,3JRGR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	phoB	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K07657	ko02020,map02020	M00434	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_5979555_13	172088.AUGA01000007_gene8507	4.564e-145	473.0	COG0704@1|root,COG0704@2|Bacteria,1MUMI@1224|Proteobacteria,2TQMN@28211|Alphaproteobacteria,3JVF2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Plays a role in the regulation of phosphate uptake	phoU	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186	-	ko:K02039	-	-	-	-	ko00000	-	-	-	PhoU
SX3_k127_5979555_9	1230476.C207_02749	4.533e-177	555.0	COG1117@1|root,COG1117@2|Bacteria,1MU16@1224|Proteobacteria,2TQX9@28211|Alphaproteobacteria,3JTBM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system	pstB	-	3.6.3.27	ko:K02036	ko02010,map02010	M00222	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.7	-	-	ABC_tran
SX3_k127_5979555_10	1297865.APJD01000003_gene6369	1.564e-168	531.0	COG0581@1|root,COG0581@2|Bacteria,1MUWB@1224|Proteobacteria,2TQYQ@28211|Alphaproteobacteria,3JSXG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphate transport system permease protein PstA	pstA	GO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0010921,GO:0015291,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0019220,GO:0019222,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0031323,GO:0033554,GO:0034220,GO:0035303,GO:0035435,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051716,GO:0055085,GO:0065007,GO:0065009,GO:0071944,GO:0098656,GO:0098660,GO:0098661	-	ko:K02038	ko02010,map02010	M00222	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.7	-	-	BPD_transp_1
SX3_k127_5979555_6	1230476.C207_02751	9.224e-200	624.0	COG0573@1|root,COG0573@2|Bacteria,1MVKP@1224|Proteobacteria,2TQU1@28211|Alphaproteobacteria,3JQNS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	probably responsible for the translocation of the substrate across the membrane	pstC	-	-	ko:K02037	ko02010,map02010	M00222	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.7	-	-	BPD_transp_1
SX3_k127_5979555_5	1297865.APJD01000003_gene6367	4.468e-216	672.0	COG0226@1|root,COG0226@2|Bacteria,1MUAZ@1224|Proteobacteria,2TTJA@28211|Alphaproteobacteria,3JU7Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex PstSACB involved in phosphate import	pstS	-	-	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	M00222	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.7	-	-	PBP_like_2
SX3_k127_5979555_3	1297865.APJD01000003_gene6366	4.364e-245	757.0	COG5002@1|root,COG5002@2|Bacteria,1MWF3@1224|Proteobacteria,2TR46@28211|Alphaproteobacteria,3JSP1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	phoR	-	2.7.13.3	ko:K07636	ko02020,map02020	M00434	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS_4,PAS_8
SX3_k127_5983213_4	1297865.APJD01000004_gene5341	2.654e-59	205.0	2EHAM@1|root,33B2H@2|Bacteria,1RAIW@1224|Proteobacteria,2U5TZ@28211|Alphaproteobacteria,3JY03@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_5983213_5	312309.VF_A1046	3.83e-07	61.0	COG0583@1|root,COG0583@2|Bacteria,1MXXA@1224|Proteobacteria,1RREE@1236|Gammaproteobacteria,1XUTM@135623|Vibrionales	135623|Vibrionales	K	Transcriptional regulator	hdfR	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_5983213_1	1297865.APJD01000004_gene5342	2.371e-104	346.0	COG0583@1|root,COG0583@2|Bacteria	2|Bacteria	K	DNA-binding transcription factor activity	-	-	-	-	-	-	-	-	-	-	-	-	LysR_substrate
SX3_k127_5983213_0	1297865.APJD01000004_gene5343	2.852e-146	466.0	COG0730@1|root,COG0730@2|Bacteria,1MUJB@1224|Proteobacteria,2TRWP@28211|Alphaproteobacteria,3JT50@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfite exporter TauE/SafE	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_5983213_2	1297865.APJD01000004_gene5344	1.701e-88	300.0	COG2764@1|root,COG2764@2|Bacteria,1N0S4@1224|Proteobacteria,2U5A4@28211|Alphaproteobacteria,3JY25@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	3-demethylubiquinone-9 3-methyltransferase	MA20_04095	-	-	ko:K04750	-	-	-	-	ko00000	-	-	-	3-dmu-9_3-mt
SX3_k127_5983213_3	1297865.APJD01000004_gene5345	3.065e-79	264.0	COG3832@1|root,COG3832@2|Bacteria,1RDMX@1224|Proteobacteria,2TSWJ@28211|Alphaproteobacteria,3JX1W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
SX3_k127_6005861_6	1297865.APJD01000011_gene6632	3.34e-40	149.0	COG2378@1|root,COG2378@2|Bacteria,1PXCX@1224|Proteobacteria,2TTKZ@28211|Alphaproteobacteria,3JUFX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WYL domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_11,WYL
SX3_k127_6005861_3	1297865.APJD01000011_gene6633	7.28e-139	442.0	COG0625@1|root,COG0625@2|Bacteria,1RA05@1224|Proteobacteria,2TS58@28211|Alphaproteobacteria,3JT29@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	gst1	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_6005861_5	1297865.APJD01000011_gene6634	8.287e-90	297.0	2D0TH@1|root,32T97@2|Bacteria,1NEQZ@1224|Proteobacteria,2U6Y4@28211|Alphaproteobacteria,3JY3N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6005861_2	1297865.APJD01000011_gene6635	1.226e-164	518.0	COG1024@1|root,COG1024@2|Bacteria,1MVA6@1224|Proteobacteria,2TSXK@28211|Alphaproteobacteria,3JVUN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_18780	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_6005861_0	1297865.APJD01000011_gene6636	6.992e-233	723.0	COG2905@1|root,COG2905@2|Bacteria,1QUQR@1224|Proteobacteria,2TWQS@28211|Alphaproteobacteria,3JT9S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Ion transport protein	-	-	-	ko:K10716	-	-	-	-	ko00000,ko02000	1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6	-	-	Ion_trans,cNMP_binding
SX3_k127_6005861_4	1297865.APJD01000011_gene6637	2.776e-136	435.0	COG0664@1|root,COG0664@2|Bacteria,1Q93V@1224|Proteobacteria,2TTEY@28211|Alphaproteobacteria,3JS14@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	cyclic nucleotide-binding	-	-	-	-	-	-	-	-	-	-	-	-	Imp-YgjV,cNMP_binding
SX3_k127_6005861_1	1297865.APJD01000011_gene6638	1.052e-180	570.0	COG1014@1|root,COG1014@2|Bacteria,1MV7Q@1224|Proteobacteria,2TTHE@28211|Alphaproteobacteria,3JWFA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6005861_7	1297865.APJD01000011_gene6639	3.569e-36	138.0	2EFX8@1|root,339PG@2|Bacteria,1NDNV@1224|Proteobacteria,2UGAE@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6005861_8	1230476.C207_06605	1.915e-31	124.0	2ADSV@1|root,30237@2|Bacteria,1NB6Q@1224|Proteobacteria,2VGGG@28211|Alphaproteobacteria,3K6J4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6005861_9	1297865.APJD01000011_gene6640	2.592e-31	123.0	2ABKD@1|root,3111W@2|Bacteria,1N0SM@1224|Proteobacteria,2UCST@28211|Alphaproteobacteria,3K0IU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6006354_1	1297865.APJD01000014_gene750	2.789e-263	812.0	COG1228@1|root,COG1228@2|Bacteria,1MVAF@1224|Proteobacteria,2TTYC@28211|Alphaproteobacteria,3JSY1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Amidohydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_1
SX3_k127_6006354_0	1297865.APJD01000014_gene751	3.344e-282	870.0	COG0477@1|root,COG2814@2|Bacteria,1MVQQ@1224|Proteobacteria,2TR7X@28211|Alphaproteobacteria,3K6QA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	ko:K08369	-	-	-	-	ko00000,ko02000	2.A.1	-	-	MFS_1,MFS_4,Sugar_tr
SX3_k127_6006354_2	1297865.APJD01000014_gene752	1.771e-197	616.0	COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,2TRAK@28211|Alphaproteobacteria,3JVRR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6006354_3	1297865.APJD01000014_gene753	4.723e-63	222.0	2AK0Z@1|root,31AQH@2|Bacteria,1NX01@1224|Proteobacteria,2USIA@28211|Alphaproteobacteria,3K42G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6007488_1	1297865.APJD01000022_gene359	1.195e-81	274.0	COG5490@1|root,COG5490@2|Bacteria,1RAUN@1224|Proteobacteria,2U5EB@28211|Alphaproteobacteria,3JY1E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phasin protein	-	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
SX3_k127_6007488_2	1297865.APJD01000022_gene358	3.271e-71	246.0	COG5490@1|root,COG5490@2|Bacteria,1MZM4@1224|Proteobacteria,2UCPK@28211|Alphaproteobacteria,3JZFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phasin protein	-	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
SX3_k127_6007488_0	1297865.APJD01000022_gene357	0.0	2475.0	COG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TQU3@28211|Alphaproteobacteria,3JTYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	pdhS	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_4,PAS_8,PAS_9
SX3_k127_6022727_1	1297865.APJD01000010_gene4867	2.094e-291	895.0	COG2271@1|root,COG2271@2|Bacteria,1MX4V@1224|Proteobacteria,2U6FF@28211|Alphaproteobacteria,3JWSX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	uhpC	-	-	ko:K02445	-	-	-	-	ko00000,ko02000	2.A.1.4.3	-	-	MFS_1
SX3_k127_6022727_0	1297865.APJD01000010_gene4866	1.984e-318	977.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TTJP@28211|Alphaproteobacteria,3JVFJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	phnY	-	-	-	-	-	-	-	-	-	-	-	Aldedh
SX3_k127_6022727_2	1297865.APJD01000010_gene4865	1.917e-275	848.0	COG1524@1|root,COG1524@2|Bacteria,1N5SF@1224|Proteobacteria,2TU7V@28211|Alphaproteobacteria,3JXCK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Type I phosphodiesterase / nucleotide pyrophosphatase	phnA	-	3.11.1.2	ko:K19670	ko00440,map00440	-	R00318	RC01309	ko00000,ko00001,ko01000	-	-	-	Phosphodiest
SX3_k127_6022727_3	1297865.APJD01000010_gene4864	1.411e-241	748.0	COG1454@1|root,COG1454@2|Bacteria,1MVPH@1224|Proteobacteria,2U2T4@28211|Alphaproteobacteria,3JX5Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Iron-containing alcohol dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	Fe-ADH
SX3_k127_6022727_4	1297865.APJD01000010_gene4863	1.358e-188	595.0	COG0583@1|root,COG0583@2|Bacteria,1MWVU@1224|Proteobacteria,2U1KV@28211|Alphaproteobacteria,3JWZH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6022727_7	1297865.APJD01000010_gene4862	3.873e-54	193.0	2ANRX@1|root,31DRT@2|Bacteria,1N3Q5@1224|Proteobacteria,2UCSQ@28211|Alphaproteobacteria,3K0GR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6022727_6	1297865.APJD01000010_gene4861	8.076e-59	205.0	COG2944@1|root,COG2944@2|Bacteria,1MZGM@1224|Proteobacteria,2UB31@28211|Alphaproteobacteria,3K0GP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulator, XRE family	-	-	-	ko:K07726	-	-	-	-	ko00000,ko03000	-	-	-	HTH_3,HTH_31
SX3_k127_6022727_5	1297865.APJD01000010_gene4860	2.192e-183	574.0	COG2239@1|root,COG2239@2|Bacteria,1MW24@1224|Proteobacteria,2TRWK@28211|Alphaproteobacteria,3JSGK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Acts as a magnesium transporter	mgtE	-	-	ko:K06213	-	-	-	-	ko00000,ko02000	1.A.26.1	-	-	CBS,MgtE,MgtE_N
SX3_k127_6025424_5	1297865.APJD01000023_gene1169	3.123e-35	134.0	COG2267@1|root,COG2267@2|Bacteria,1MZG8@1224|Proteobacteria,2TUWZ@28211|Alphaproteobacteria,3JUFG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	3.4.11.5	ko:K01259	ko00330,map00330	-	R00135	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_6025424_4	1297865.APJD01000023_gene1168	6.96e-111	359.0	COG1733@1|root,COG1733@2|Bacteria,1RF0R@1224|Proteobacteria,2U1VF@28211|Alphaproteobacteria,3JWK8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_6025424_3	1297865.APJD01000023_gene1167	2.224e-136	435.0	COG3917@1|root,COG3917@2|Bacteria,1RA6I@1224|Proteobacteria,2U5JB@28211|Alphaproteobacteria,3JRJN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	DSBA-like thioredoxin domain	dsbA	-	5.99.1.4	ko:K14584	ko00626,ko01100,ko01120,ko01220,map00626,map01100,map01120,map01220	M00534	R05137	RC03084	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	DSBA
SX3_k127_6025424_0	1297865.APJD01000023_gene1166	0.0	1015.0	COG0318@1|root,COG0318@2|Bacteria,1MXWG@1224|Proteobacteria,2TTYZ@28211|Alphaproteobacteria,3JU0G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_6025424_1	1297865.APJD01000023_gene1165	4.002e-157	497.0	COG1028@1|root,COG1028@2|Bacteria,1MWJQ@1224|Proteobacteria,2TVRP@28211|Alphaproteobacteria,3JSWP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	short chain dehydrogenase	MA20_07325	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_6025424_2	1297865.APJD01000023_gene1164	5.975e-150	473.0	COG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,2TQRA@28211|Alphaproteobacteria,3JV5Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, middle domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_6026666_4	1297865.APJD01000003_gene6246	4.729e-152	480.0	COG2267@1|root,COG2267@2|Bacteria,1N03H@1224|Proteobacteria,2U2EH@28211|Alphaproteobacteria,3JV1A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	3.1.1.76	ko:K22250	-	-	-	-	ko00000,ko01000	-	-	-	Abhydrolase_1
SX3_k127_6026666_11	1230476.C207_05175	8.589e-74	250.0	COG5490@1|root,COG5490@2|Bacteria,1PTJQ@1224|Proteobacteria,2V5EZ@28211|Alphaproteobacteria,3JYEI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phasin protein	-	-	-	-	-	-	-	-	-	-	-	-	Phasin_2
SX3_k127_6026666_1	1297865.APJD01000003_gene6248	7.689e-260	802.0	COG0477@1|root,COG2814@2|Bacteria,1QTX0@1224|Proteobacteria,2TX00@28211|Alphaproteobacteria,3JRZT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Transmembrane secretion effector	-	-	-	ko:K08217	-	-	-	-	br01600,ko00000,ko01504,ko02000	2.A.1.21.1,2.A.1.21.22	-	-	MFS_1,MFS_3
SX3_k127_6026666_17	1122604.JONR01000013_gene3280	5.559e-40	152.0	2CC1B@1|root,32RUI@2|Bacteria,1N1T2@1224|Proteobacteria,1ST07@1236|Gammaproteobacteria,1XB8X@135614|Xanthomonadales	135614|Xanthomonadales	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6026666_6	1297865.APJD01000003_gene6250	9.522e-119	382.0	COG1335@1|root,COG1335@2|Bacteria,1QK2B@1224|Proteobacteria,2U5X9@28211|Alphaproteobacteria,3JXYP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	-	-	-	-	-	-	-	-	-	-	-	-	Isochorismatase
SX3_k127_6026666_9	1297865.APJD01000003_gene6251	3.789e-85	283.0	COG1846@1|root,COG1846@2|Bacteria,1RI74@1224|Proteobacteria,2UAPB@28211|Alphaproteobacteria,3JZYN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_6026666_13	1297865.APJD01000003_gene6253	4.326e-66	225.0	2AFRT@1|root,315TS@2|Bacteria,1NEVZ@1224|Proteobacteria,2UIVX@28211|Alphaproteobacteria,3K1EK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6026666_7	1297865.APJD01000003_gene6254	9.529e-108	350.0	2A9FP@1|root,30YM9@2|Bacteria,1RIZ4@1224|Proteobacteria,2UBPC@28211|Alphaproteobacteria,3JZSB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6026666_2	1297865.APJD01000003_gene6255	9.865e-219	680.0	COG4585@1|root,COG4585@2|Bacteria,1QUYA@1224|Proteobacteria,2U0BQ@28211|Alphaproteobacteria,3JXMQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Histidine kinase	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA_3,Reg_prop,Y_Y_Y
SX3_k127_6026666_5	1297865.APJD01000003_gene6256	9.828e-133	424.0	COG2197@1|root,COG2197@2|Bacteria,1NQH7@1224|Proteobacteria,2U895@28211|Alphaproteobacteria,3K5Z3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	helix_turn_helix, Lux Regulon	degU	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_6026666_14	1297865.APJD01000003_gene6257	3.102e-65	226.0	2CIYR@1|root,2ZU5E@2|Bacteria,1RFC2@1224|Proteobacteria,2U8GX@28211|Alphaproteobacteria,3JYZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6026666_0	1297865.APJD01000003_gene6258	0.0	1093.0	COG2885@1|root,COG2885@2|Bacteria,1R508@1224|Proteobacteria,2U31G@28211|Alphaproteobacteria,3JUTU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	OmpA family	-	-	-	-	-	-	-	-	-	-	-	-	OmpA
SX3_k127_6026666_8	1297865.APJD01000003_gene6259	2.889e-95	320.0	COG1100@1|root,COG1100@2|Bacteria,1PTB9@1224|Proteobacteria,2U4MB@28211|Alphaproteobacteria,3JV3E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ras of Complex, Roc, domain of DAPkinase	-	-	-	-	-	-	-	-	-	-	-	-	Ras
SX3_k127_6026666_12	1297865.APJD01000003_gene6260	2.553e-69	237.0	2C8DW@1|root,32RKY@2|Bacteria,1MZUD@1224|Proteobacteria,2UCNB@28211|Alphaproteobacteria,3JZBU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF3597)	MA20_41375	-	-	-	-	-	-	-	-	-	-	-	DUF3597
SX3_k127_6026666_16	1297865.APJD01000003_gene6261	2.028e-47	171.0	2AFV7@1|root,315XR@2|Bacteria,1NFQS@1224|Proteobacteria,2UJ94@28211|Alphaproteobacteria,3K12M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6026666_10	1297865.APJD01000003_gene6262	4.676e-76	260.0	COG1970@1|root,COG1970@2|Bacteria,1RHG8@1224|Proteobacteria,2U99Y@28211|Alphaproteobacteria,3JY5H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell	mscL	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066	-	ko:K03282	-	-	-	-	ko00000,ko02000	1.A.22.1	-	-	MscL
SX3_k127_6026666_20	1230476.C207_05159	1.158e-17	94.0	2BICD@1|root,32CIG@2|Bacteria,1NMAS@1224|Proteobacteria,2UMS4@28211|Alphaproteobacteria,3K1Z5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6026666_3	1297865.APJD01000003_gene6263	1.374e-168	531.0	COG0500@1|root,COG2226@2|Bacteria,1MXP4@1224|Proteobacteria,2U0YK@28211|Alphaproteobacteria,3K60X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	ubiE/COQ5 methyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_25
SX3_k127_6026666_18	402881.Plav_0970	6.103e-25	106.0	COG1959@1|root,COG1959@2|Bacteria,1RGVW@1224|Proteobacteria,2UA5C@28211|Alphaproteobacteria,1JQ8Y@119043|Rhodobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Rrf2
SX3_k127_6030929_1	1037409.BJ6T_20510	4.135e-207	651.0	COG1475@1|root,COG1475@2|Bacteria,1MVF9@1224|Proteobacteria,2TR0P@28211|Alphaproteobacteria,3JSCN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K03497	-	-	-	-	ko00000,ko03000,ko03036,ko04812	-	-	-	ParBc
SX3_k127_6030929_0	883078.HMPREF9695_02462	0.0	2383.0	COG0553@1|root,COG0553@2|Bacteria,1MXQH@1224|Proteobacteria,2TR5V@28211|Alphaproteobacteria,3JRHR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KL	Evidence Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	AAA_34,Helicase_C_4
SX3_k127_6030929_3	316055.RPE_4041	4.579e-164	525.0	COG4643@1|root,COG4643@2|Bacteria,1MW9E@1224|Proteobacteria,2TS3B@28211|Alphaproteobacteria,3JT6Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Toprim domain	-	-	-	-	-	-	-	-	-	-	-	-	Toprim_3
SX3_k127_6030929_2	316056.RPC_3917	2.322e-178	565.0	2C0ZE@1|root,2Z7S6@2|Bacteria,1MW5M@1224|Proteobacteria,2TQVZ@28211|Alphaproteobacteria,3JSD7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2493)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2493
SX3_k127_6030929_4	316056.RPC_3562	8.318e-55	196.0	2DPU3@1|root,32UMR@2|Bacteria,1MZUC@1224|Proteobacteria,2UCHY@28211|Alphaproteobacteria,3JYVX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6030929_5	288000.BBta_7420	8.257e-26	110.0	COG5489@1|root,COG5489@2|Bacteria,1RDDE@1224|Proteobacteria,2U6ZR@28211|Alphaproteobacteria,3JZQG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF736)	-	-	-	-	-	-	-	-	-	-	-	-	DUF736
SX3_k127_6033833_10	1297865.APJD01000006_gene4638	5.018e-42	154.0	COG0330@1|root,COG0330@2|Bacteria,1MV7R@1224|Proteobacteria,2TRP4@28211|Alphaproteobacteria,3JR4X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	HflC and HflK could regulate a protease	hflC	-	-	ko:K04087	-	M00742	-	-	ko00000,ko00002,ko01000	-	-	-	Band_7
SX3_k127_6033833_11	1230476.C207_03367	8.221e-33	127.0	COG3242@1|root,COG3242@2|Bacteria,1NGPZ@1224|Proteobacteria,2UJA9@28211|Alphaproteobacteria,3K19V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2065)	MA20_02305	-	-	ko:K09937	-	-	-	-	ko00000	-	-	-	DUF2065
SX3_k127_6033833_1	1297865.APJD01000006_gene4640	8.715e-305	938.0	COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2TQPZ@28211|Alphaproteobacteria,3JQXM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the peptidase S1C family	degP	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564	3.4.21.107	ko:K04771	ko01503,ko02020,map01503,map02020	M00728	-	-	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	-	-	-	PDZ,PDZ_2,Trypsin_2
SX3_k127_6033833_7	316055.RPE_2185	2.725e-124	406.0	COG0560@1|root,COG0560@2|Bacteria,1MWA3@1224|Proteobacteria,2TSEU@28211|Alphaproteobacteria,3JSAV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	phosphoserine phosphatase	serB	-	3.1.3.3	ko:K01079	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R00582	RC00017	ko00000,ko00001,ko00002,ko01000,ko01009	-	-	-	HAD
SX3_k127_6033833_4	1297865.APJD01000006_gene4642	1.231e-191	608.0	COG0324@1|root,COG0324@2|Bacteria,1MUB2@1224|Proteobacteria,2TR8Z@28211|Alphaproteobacteria,3JT2U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)	miaA	GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.5.1.75	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	-	R01122	RC02820	ko00000,ko00001,ko01000,ko01006,ko03016	-	-	-	IPPT
SX3_k127_6033833_0	1297865.APJD01000006_gene4643	0.0	1218.0	COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,2TR1I@28211|Alphaproteobacteria,3JR67@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Acetolactate synthase	ilvI	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_6033833_3	1297865.APJD01000006_gene4644	7.951e-206	644.0	COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2TUWV@28211|Alphaproteobacteria,3JTKA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	MA20_02330	-	4.3.1.19	ko:K01754	ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230	M00570	R00220,R00996	RC00418,RC02600	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_6033833_9	1297865.APJD01000006_gene4645	7.187e-110	356.0	COG0440@1|root,COG0440@2|Bacteria,1RAGN@1224|Proteobacteria,2U5CW@28211|Alphaproteobacteria,3JS41@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Acetolactate synthase small subunit	ilvH	-	2.2.1.6	ko:K01653	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	ACT,ACT_5,ALS_ss_C
SX3_k127_6033833_6	1297865.APJD01000006_gene4646	2.853e-151	478.0	COG0500@1|root,COG2226@2|Bacteria,1QAQK@1224|Proteobacteria,2TVNQ@28211|Alphaproteobacteria,3JSNH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Ribosomal protein L11 methyltransferase (PrmA)	MA20_02340	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25
SX3_k127_6033833_5	1297865.APJD01000006_gene4647	2.876e-184	577.0	COG0697@1|root,COG0697@2|Bacteria,1MVKG@1224|Proteobacteria,2TVQG@28211|Alphaproteobacteria,3JSBX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	eamA	-	-	ko:K15268	-	-	-	-	ko00000,ko02000	2.A.7.3.2	-	-	EamA
SX3_k127_6033833_8	1297865.APJD01000006_gene4648	4.519e-123	396.0	COG1280@1|root,COG1280@2|Bacteria,1RET0@1224|Proteobacteria,2TT5R@28211|Alphaproteobacteria,3JTB9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	LysE type translocator	eamB	-	-	-	-	-	-	-	-	-	-	-	LysE
SX3_k127_6033833_2	1297865.APJD01000006_gene4649	1.027e-219	682.0	COG0059@1|root,COG0059@2|Bacteria,1MV7M@1224|Proteobacteria,2TRXI@28211|Alphaproteobacteria,3JT4K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate	ilvC	-	1.1.1.86	ko:K00053	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R03051,R04439,R04440,R05068,R05069,R05071	RC00726,RC00836,RC00837,RC01726	ko00000,ko00001,ko00002,ko01000	-	-	-	IlvC,IlvN
SX3_k127_6038113_12	1297865.APJD01000009_gene2825	9.327e-47	168.0	COG3719@1|root,COG3719@2|Bacteria,1PTUN@1224|Proteobacteria,2TQUU@28211|Alphaproteobacteria,3JSX9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the RNase T2 family	rns	-	3.1.27.1,3.1.27.6	ko:K01166,ko:K01169	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Ribonuclease_T2
SX3_k127_6038113_5	1297865.APJD01000009_gene2826	3.622e-182	575.0	COG2961@1|root,COG2961@2|Bacteria,1MWGA@1224|Proteobacteria,2TU5K@28211|Alphaproteobacteria,3JUDU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Specifically methylates the adenine in position 2030 of 23S rRNA	rlmJ	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008988,GO:0009451,GO:0009987,GO:0010467,GO:0015976,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036307,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.266	ko:K07115	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	RsmJ
SX3_k127_6038113_13	335659.S23_60990	1.195e-38	148.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,3K03T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	'Cold-shock' DNA-binding domain	MA20_05565	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
SX3_k127_6038113_6	1297865.APJD01000009_gene2827	1.936e-137	438.0	COG3637@1|root,COG3637@2|Bacteria,1MXV4@1224|Proteobacteria,2U0JD@28211|Alphaproteobacteria,3JTF8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Outer membrane protein beta-barrel domain	hbp2	GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_6038113_0	1297865.APJD01000009_gene2828	0.0	1395.0	COG0322@1|root,COG0322@2|Bacteria,1MV38@1224|Proteobacteria,2TT32@28211|Alphaproteobacteria,3JS2S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision	uvrC	GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009380,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:1902494,GO:1905347,GO:1905348,GO:1990391	-	ko:K03703	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	GIY-YIG,HHH_2,HHH_5,UVR,UvrC_HhH_N
SX3_k127_6038113_7	398525.KB900701_gene2736	5.721e-130	416.0	COG0558@1|root,COG0558@2|Bacteria,1RCZ7@1224|Proteobacteria,2TUI7@28211|Alphaproteobacteria,3JRMH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	pgsA	-	2.7.8.41,2.7.8.5	ko:K00995,ko:K08744	ko00564,ko01100,map00564,map01100	-	R01801,R02030	RC00002,RC00017,RC02795	ko00000,ko00001,ko01000	-	-	-	CDP-OH_P_transf
SX3_k127_6038113_11	1297865.APJD01000009_gene2830	8.518e-49	174.0	COG1977@1|root,COG1977@2|Bacteria,1N0IE@1224|Proteobacteria,2UF4F@28211|Alphaproteobacteria,3K056@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin	moaD	-	-	ko:K03636	ko04122,map04122	-	-	-	ko00000,ko00001	-	-	-	ThiS
SX3_k127_6038113_9	1297865.APJD01000009_gene2831	1.319e-95	313.0	COG0314@1|root,COG0314@2|Bacteria,1RGUX@1224|Proteobacteria,2U73K@28211|Alphaproteobacteria,3JYB8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	MoaE protein	moaE	-	2.8.1.12	ko:K03635	ko00790,ko01100,ko04122,map00790,map01100,map04122	-	R09395	RC02507	ko00000,ko00001,ko01000	-	-	-	MoaE
SX3_k127_6038113_2	1297865.APJD01000009_gene2832	2.508e-211	662.0	COG2890@1|root,COG2890@2|Bacteria,1MX8Q@1224|Proteobacteria,2TSNS@28211|Alphaproteobacteria,3JS52@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the protein N5-glutamine methyltransferase family	prmB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564	2.1.1.298	ko:K07320	-	-	R10806	RC00003,RC03279	ko00000,ko01000,ko03009	-	-	-	MTS
SX3_k127_6038113_1	1297865.APJD01000009_gene2833	7.435e-291	895.0	COG2200@1|root,COG2200@2|Bacteria,1MU4F@1224|Proteobacteria,2TU9M@28211|Alphaproteobacteria,3JRX2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	MA20_05620	-	-	ko:K13593	ko04112,map04112	-	-	-	ko00000,ko00001	-	-	-	EAL
SX3_k127_6038113_4	1297865.APJD01000009_gene2834	6.184e-187	584.0	COG0647@1|root,COG0647@2|Bacteria,1MU9Y@1224|Proteobacteria,2TUH0@28211|Alphaproteobacteria,3JRWZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Haloacid dehalogenase-like hydrolase	MA20_05625	-	-	-	-	-	-	-	-	-	-	-	Hydrolase_6,Hydrolase_like
SX3_k127_6038113_10	1230476.C207_03518	1.772e-77	261.0	COG0745@1|root,COG0745@2|Bacteria,1RDNP@1224|Proteobacteria,2U7BP@28211|Alphaproteobacteria,3JY5W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	QU41_12045	-	-	ko:K03413	ko02020,ko02030,map02020,map02030	M00506	-	-	ko00000,ko00001,ko00002,ko02022,ko02035	-	-	-	Response_reg
SX3_k127_6038113_3	172088.AUGA01000023_gene652	2.079e-203	634.0	COG0196@1|root,COG0196@2|Bacteria,1MV9I@1224|Proteobacteria,2TTUY@28211|Alphaproteobacteria,3JTDM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the ribF family	ribF	-	2.7.1.26,2.7.7.2	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	M00125	R00161,R00549	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_syn,Flavokinase
SX3_k127_6038113_8	1297865.APJD01000009_gene2837	4.042e-105	343.0	COG0110@1|root,COG0110@2|Bacteria,1RA2T@1224|Proteobacteria,2U5F8@28211|Alphaproteobacteria,3JVXK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Maltose acetyltransferase	maa	-	2.3.1.79	ko:K00661	-	-	-	-	ko00000,ko01000	-	-	-	Hexapep,Hexapep_2,Mac
SX3_k127_6071975_3	1297865.APJD01000012_gene1354	5.178e-159	503.0	COG0559@1|root,COG0559@2|Bacteria,1R5BB@1224|Proteobacteria,2TT61@28211|Alphaproteobacteria,3JSC1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_39775	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_6071975_0	1297865.APJD01000012_gene1353	0.0	1036.0	COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,2TU7H@28211|Alphaproteobacteria,3JSWU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	MA20_39770	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_6071975_1	1297865.APJD01000012_gene1352	3.263e-259	822.0	COG0683@1|root,COG0683@2|Bacteria,1MW1I@1224|Proteobacteria,2TTZF@28211|Alphaproteobacteria,3JT0P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_6071975_2	1297865.APJD01000012_gene1351	1.089e-248	771.0	COG0683@1|root,COG0683@2|Bacteria,1MW1I@1224|Proteobacteria,2TTZF@28211|Alphaproteobacteria,3JT0P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_6071975_6	1297865.APJD01000012_gene1350	4.041e-85	293.0	COG1846@1|root,COG1846@2|Bacteria,1N2K6@1224|Proteobacteria,2U39V@28211|Alphaproteobacteria,3JT1T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	MA20_39760	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_6071975_5	1297865.APJD01000012_gene1349	2.987e-93	306.0	COG3865@1|root,COG3865@2|Bacteria,1N7IY@1224|Proteobacteria,2U993@28211|Alphaproteobacteria,3JSA3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	3-demethylubiquinone-9 3-methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	3-dmu-9_3-mt
SX3_k127_6071975_4	1297865.APJD01000012_gene1348	2.219e-152	481.0	COG3637@1|root,COG3637@2|Bacteria,1N4JR@1224|Proteobacteria,2UEXW@28211|Alphaproteobacteria,3K03M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Outer membrane protein beta-barrel domain	-	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_6073958_2	1297865.APJD01000006_gene4674	2.538e-304	932.0	COG1600@1|root,COG1600@2|Bacteria,1MXS4@1224|Proteobacteria,2U0QU@28211|Alphaproteobacteria,3JWBX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	4Fe-4S binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Fer4,Fer4_16,SCP2
SX3_k127_6073958_16	1297865.APJD01000006_gene4673	3.307e-141	449.0	COG1028@1|root,COG1028@2|Bacteria,1RBGC@1224|Proteobacteria,2U6FD@28211|Alphaproteobacteria,3JXHW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_6073958_9	1297865.APJD01000006_gene4672	7.103e-189	604.0	COG0451@1|root,COG0451@2|Bacteria,1MWYB@1224|Proteobacteria,2TSDE@28211|Alphaproteobacteria,3JSV8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	NmrA-like family	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase,NAD_binding_10
SX3_k127_6073958_8	1297865.APJD01000006_gene4671	3.169e-189	592.0	COG0451@1|root,COG0451@2|Bacteria,1MWYB@1224|Proteobacteria,2TSDE@28211|Alphaproteobacteria,3JSV8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	NmrA-like family	-	-	-	-	-	-	-	-	-	-	-	-	Epimerase
SX3_k127_6073958_10	1297865.APJD01000006_gene4670	6.353e-184	575.0	COG1396@1|root,COG1396@2|Bacteria,1MUG2@1224|Proteobacteria,2TR3R@28211|Alphaproteobacteria,3JVZI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_31
SX3_k127_6073958_14	1297865.APJD01000006_gene4669	3.26e-162	513.0	COG0600@1|root,COG0600@2|Bacteria,1MVD2@1224|Proteobacteria,2TT6U@28211|Alphaproteobacteria,3JVFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_02395	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_6073958_12	172088.AUGA01000004_gene3837	2.42e-164	520.0	COG1116@1|root,COG1116@2|Bacteria,1N7FP@1224|Proteobacteria,2TRKZ@28211|Alphaproteobacteria,3JRZ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	MA20_02390	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_6073958_6	1297865.APJD01000006_gene4667	3.585e-200	625.0	COG1893@1|root,COG1893@2|Bacteria,1MX5M@1224|Proteobacteria,2TVRD@28211|Alphaproteobacteria,3K5Z9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid	-	-	-	-	-	-	-	-	-	-	-	-	ApbA,ApbA_C
SX3_k127_6073958_21	1297865.APJD01000006_gene4666	1.177e-54	192.0	2BJHE@1|root,32DUA@2|Bacteria,1N7FR@1224|Proteobacteria,2UF87@28211|Alphaproteobacteria,3K0WV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3551)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3551
SX3_k127_6073958_22	1297865.APJD01000006_gene4665	4.447e-54	191.0	2BJHE@1|root,32DUA@2|Bacteria,1N7FR@1224|Proteobacteria,2UF87@28211|Alphaproteobacteria,3K0WV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3551)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3551
SX3_k127_6073958_17	172088.AUGA01000004_gene3848	3.352e-136	439.0	29ZJ6@1|root,30MJD@2|Bacteria,1MVZH@1224|Proteobacteria,2U2T7@28211|Alphaproteobacteria,3JUHF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6073958_11	1230476.C207_03347	2.55e-179	563.0	28IMV@1|root,2Z8NA@2|Bacteria,1R5B6@1224|Proteobacteria,2TRB5@28211|Alphaproteobacteria,3JS02@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal dependent phosphohydrolases with conserved 'HD' motif.	-	-	-	-	-	-	-	-	-	-	-	-	HD
SX3_k127_6073958_24	1230476.C207_03348	5.929e-39	146.0	2AR68@1|root,31GFV@2|Bacteria,1N0QQ@1224|Proteobacteria,2UD4U@28211|Alphaproteobacteria,3K0IJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6073958_13	1297865.APJD01000006_gene4661	5.216e-164	517.0	COG1125@1|root,COG1125@2|Bacteria,1QTUC@1224|Proteobacteria,2TTMA@28211|Alphaproteobacteria,3JSPY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	yehX	GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0031460,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0072337	-	ko:K05847	ko02010,map02010	M00209	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	ABC_tran,CBS
SX3_k127_6073958_1	1297865.APJD01000006_gene4660	4e-323	994.0	COG1174@1|root,COG1732@1|root,COG1174@2|Bacteria,COG1732@2|Bacteria,1MXA1@1224|Proteobacteria,2TUNH@28211|Alphaproteobacteria,3JTUK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Substrate binding domain of ABC-type glycine betaine transport system	MA20_02380	-	-	ko:K05845,ko:K05846	ko02010,map02010	M00209	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.12	-	-	BPD_transp_1,OpuAC
SX3_k127_6073958_19	1122222.AXWR01000037_gene290	1.467e-94	321.0	COG1277@1|root,COG1277@2|Bacteria,1WJAA@1297|Deinococcus-Thermus	1297|Deinococcus-Thermus	S	ABC-type transport system involved in multi-copper enzyme maturation permease component	-	-	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane_2
SX3_k127_6073958_7	1297865.APJD01000006_gene4658	3.575e-196	616.0	COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,2TSI2@28211|Alphaproteobacteria,3JQY0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	AAA domain, putative AbiEii toxin, Type IV TA system	nosF	-	-	ko:K01990,ko:K19340	ko02010,map02010	M00254,M00762	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1,3.A.1.132.2	-	-	ABC_tran
SX3_k127_6073958_3	398525.KB900701_gene6596	4.574e-230	715.0	COG1470@1|root,COG1470@2|Bacteria,1R8IF@1224|Proteobacteria,2U1RT@28211|Alphaproteobacteria,3JWD3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NPCBM-associated, NEW3 domain of alpha-galactosidase	-	-	-	-	-	-	-	-	-	-	-	-	NPCBM_assoc
SX3_k127_6073958_0	1297865.APJD01000006_gene4656	0.0	1155.0	COG1368@1|root,COG1368@2|Bacteria,1MXT1@1224|Proteobacteria,2TVM8@28211|Alphaproteobacteria,3JRKF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Sulfatase	MA20_02375	-	-	-	-	-	-	-	-	-	-	-	Sulfatase
SX3_k127_6073958_15	1297865.APJD01000006_gene4655	2.316e-145	461.0	COG1309@1|root,COG1309@2|Bacteria,1PAAI@1224|Proteobacteria,2TRN6@28211|Alphaproteobacteria,3JUU1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	WHG domain	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N,WHG
SX3_k127_6073958_25	224911.27348412	1.731e-11	67.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6073958_18	1297865.APJD01000006_gene4654	3.357e-127	407.0	COG2717@1|root,COG2717@2|Bacteria,1R4CY@1224|Proteobacteria,2U37R@28211|Alphaproteobacteria,3JUKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain	-	-	-	-	-	-	-	-	-	-	-	-	Ferric_reduct
SX3_k127_6073958_23	1297865.APJD01000006_gene4653	2.976e-42	156.0	2ABC6@1|root,310SW@2|Bacteria,1N04X@1224|Proteobacteria,2UCM6@28211|Alphaproteobacteria,3K0V2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6073958_20	1297865.APJD01000006_gene4652	4.494e-87	288.0	COG3755@1|root,COG3755@2|Bacteria,1N9U0@1224|Proteobacteria,2UGIB@28211|Alphaproteobacteria,3K1JB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lysozyme inhibitor LprI	-	-	-	-	-	-	-	-	-	-	-	-	LprI
SX3_k127_6073958_5	1297865.APJD01000006_gene4651	1.23e-210	657.0	COG2114@1|root,COG2114@2|Bacteria,1MVZU@1224|Proteobacteria,2U128@28211|Alphaproteobacteria,3JT5W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	cyaB	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc
SX3_k127_6073958_4	1297865.APJD01000006_gene4650	2.86e-214	668.0	COG5330@1|root,COG5330@2|Bacteria,1R3VY@1224|Proteobacteria,2TUGG@28211|Alphaproteobacteria,3JUE9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein conserved in bacteria (DUF2336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2336
SX3_k127_6079966_1	1297865.APJD01000014_gene704	2.758e-192	609.0	COG0438@1|root,COG0438@2|Bacteria,1QFQQ@1224|Proteobacteria,2U3JJ@28211|Alphaproteobacteria,3K201@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_4,Glycos_transf_1
SX3_k127_6079966_0	1297865.APJD01000014_gene703	6.483e-194	613.0	COG2244@1|root,COG2244@2|Bacteria,1RA38@1224|Proteobacteria,2UB6Y@28211|Alphaproteobacteria,3K0M1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	polysaccharide biosynthetic process	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt,Polysacc_synt_C
SX3_k127_6079966_2	1297865.APJD01000014_gene702	4.586e-173	543.0	COG0438@1|root,COG0438@2|Bacteria,1NAE9@1224|Proteobacteria,2TXQI@28211|Alphaproteobacteria,3K6UI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glycos_transf_1
SX3_k127_6119368_0	1297865.APJD01000001_gene5935	0.0	1300.0	COG0187@1|root,COG0187@2|Bacteria,1MVH1@1224|Proteobacteria,2TQZV@28211|Alphaproteobacteria,3JRV8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule	parE	-	-	ko:K02622	-	-	-	-	ko00000,ko01000,ko02048,ko03032,ko03036	-	-	-	DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim
SX3_k127_6119983_0	883080.HMPREF9697_03929	0.0	1025.0	COG1475@1|root,COG1475@2|Bacteria,1Q16F@1224|Proteobacteria,2TUB3@28211|Alphaproteobacteria,3JVS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	ParB-like nuclease domain	-	-	-	-	-	-	-	-	-	-	-	-	ParBc
SX3_k127_6119983_2	883080.HMPREF9697_03930	5.468e-78	269.0	28IUK@1|root,2Z8T9@2|Bacteria,1RGAA@1224|Proteobacteria,2U7BC@28211|Alphaproteobacteria,3K5VE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6119983_1	883080.HMPREF9697_03931	9.184e-171	540.0	28IFN@1|root,2Z8HC@2|Bacteria,1PQ6C@1224|Proteobacteria,2U2GK@28211|Alphaproteobacteria,3JRXH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6119983_3	883080.HMPREF9697_03932	2.378e-69	237.0	2FJZ9@1|root,34BMN@2|Bacteria	2|Bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_61230_12	1297865.APJD01000018_gene5668	1.351e-24	104.0	2DEYY@1|root,2ZPU6@2|Bacteria,1N9SD@1224|Proteobacteria,2UHFQ@28211|Alphaproteobacteria,3K0WQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3309)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3309
SX3_k127_61230_9	1297865.APJD01000018_gene5667	6.051e-53	190.0	2EF9R@1|root,3392M@2|Bacteria,1RHNG@1224|Proteobacteria,2U9B1@28211|Alphaproteobacteria,3JZD6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	QU41_28935	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_61230_5	1297865.APJD01000018_gene5666	2.574e-113	366.0	2DMJE@1|root,32RYR@2|Bacteria,1N7PS@1224|Proteobacteria,2UFEW@28211|Alphaproteobacteria,3JT0Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4112)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4112
SX3_k127_61230_3	1297865.APJD01000018_gene5665	3.112e-206	649.0	COG2207@1|root,COG2207@2|Bacteria,1R5Q9@1224|Proteobacteria,2U1BX@28211|Alphaproteobacteria,3JWUC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_61230_13	224911.27348412	6.609e-08	57.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_61230_10	1297865.APJD01000018_gene5664	6.624e-43	159.0	2DI5B@1|root,3022U@2|Bacteria,1N5G6@1224|Proteobacteria,2UE3J@28211|Alphaproteobacteria,3K0G2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_61230_8	398525.KB900701_gene7706	4.219e-77	259.0	COG0664@1|root,COG0664@2|Bacteria,1N6WV@1224|Proteobacteria,2U63Z@28211|Alphaproteobacteria,3JYEK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Cyclic nucleotide-monophosphate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	cNMP_binding
SX3_k127_61230_0	1297865.APJD01000018_gene5662	0.0	1046.0	COG0306@1|root,COG0306@2|Bacteria,1MVXK@1224|Proteobacteria,2TU98@28211|Alphaproteobacteria,3JSN4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphate transporter family	-	-	-	ko:K03306	-	-	-	-	ko00000	2.A.20	-	-	PHO4
SX3_k127_61230_7	1297865.APJD01000018_gene5661	1.007e-86	293.0	2BSW3@1|root,32MZQ@2|Bacteria,1RB9D@1224|Proteobacteria,2U9SS@28211|Alphaproteobacteria,3JZH5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Family of unknown function (DUF5413)	-	-	-	-	-	-	-	-	-	-	-	-	DUF5413
SX3_k127_61230_1	1297865.APJD01000018_gene5660	0.0	1011.0	COG0508@1|root,COG4249@1|root,COG0508@2|Bacteria,COG4249@2|Bacteria,1R954@1224|Proteobacteria,2TWG4@28211|Alphaproteobacteria,3JTD6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Peptidase C14 caspase catalytic subunit p20	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_61230_2	1297865.APJD01000018_gene5659	3.468e-283	877.0	COG0104@1|root,COG0104@2|Bacteria,1MU5B@1224|Proteobacteria,2TRKY@28211|Alphaproteobacteria,3JQNC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP	purA	GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.4.4	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	M00049	R01135	RC00458,RC00459	ko00000,ko00001,ko00002,ko01000	-	-	-	Adenylsucc_synt
SX3_k127_61230_6	1297865.APJD01000018_gene5658	9.394e-93	308.0	COG2606@1|root,COG2606@2|Bacteria,1RGX5@1224|Proteobacteria,2U5DV@28211|Alphaproteobacteria,3JVQ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Aminoacyl-tRNA editing domain	ybaK	GO:0002161,GO:0003674,GO:0003824,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0043906,GO:0044237,GO:0044238,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360	-	ko:K03976	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	tRNA_edit
SX3_k127_61230_11	1230476.C207_07118	5.946e-39	152.0	2ACCY@1|root,311Y7@2|Bacteria,1N2JB@1224|Proteobacteria,2UDS5@28211|Alphaproteobacteria,3K012@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_61230_4	1297865.APJD01000018_gene5656	7.527e-179	560.0	COG2124@1|root,COG2124@2|Bacteria,1R4B1@1224|Proteobacteria,2U416@28211|Alphaproteobacteria,3JX8M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	-	-	-	-	-	-	-	-	-	-	-	-	p450
SX3_k127_612758_26	1230476.C207_04809	1.388e-93	308.0	2A68Q@1|root,30V1B@2|Bacteria,1R6U2@1224|Proteobacteria,2U164@28211|Alphaproteobacteria,3JXKK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_612758_10	189753.AXAS01000003_gene4759	2.554e-202	640.0	COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,2TSMQ@28211|Alphaproteobacteria,3JT42@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	MatE	-	-	-	-	-	-	-	-	-	-	-	-	MatE
SX3_k127_612758_28	1304877.KI519400_gene1437	1.333e-76	261.0	2A68Q@1|root,30V1B@2|Bacteria,1R6U2@1224|Proteobacteria,2U164@28211|Alphaproteobacteria,3JXKK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_612758_11	1297865.APJD01000006_gene4700	4.519e-202	631.0	COG0715@1|root,COG0715@2|Bacteria,1MV9S@1224|Proteobacteria,2TTIU@28211|Alphaproteobacteria,3JTNG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ABC transporter, phosphonate, periplasmic substrate-binding protein	-	-	-	ko:K02051,ko:K15553	ko00920,ko02010,map00920,map02010	M00188,M00436	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.16,3.A.1.17,3.A.1.17.2	-	-	NMT1,NMT1_2
SX3_k127_612758_29	1230476.C207_04811	6.488e-25	109.0	2EQ0D@1|root,2ZRDS@2|Bacteria,1NBWW@1224|Proteobacteria,2UGS4@28211|Alphaproteobacteria,3K15S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_612758_3	1230476.C207_04812	6.737e-305	940.0	COG2031@1|root,COG2031@2|Bacteria,1MV5A@1224|Proteobacteria,2U2JY@28211|Alphaproteobacteria,3JTWM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Short chain fatty acid transporter	-	-	-	ko:K02106	ko02020,map02020	-	-	-	ko00000,ko00001	2.A.73.1	-	-	SCFA_trans
SX3_k127_612758_0	1297865.APJD01000006_gene4698	0.0	2291.0	COG0243@1|root,COG1018@1|root,COG0243@2|Bacteria,COG1018@2|Bacteria,1NR6J@1224|Proteobacteria,2VF1V@28211|Alphaproteobacteria,3JQQ6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Molydopterin dinucleotide binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_6,Fer2,Molybdop_Fe4S4,Molybdopterin,Molydop_binding,NAD_binding_1
SX3_k127_612758_19	1297865.APJD01000006_gene4697	2.088e-139	444.0	COG1802@1|root,COG1802@2|Bacteria,1R4I2@1224|Proteobacteria,2U20Q@28211|Alphaproteobacteria,3JUJD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_612758_6	1297865.APJD01000006_gene4696	4.561e-257	792.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3JVXU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_612758_15	1297865.APJD01000006_gene4695	2.253e-157	498.0	COG1024@1|root,COG1024@2|Bacteria,1MWZC@1224|Proteobacteria,2TRIH@28211|Alphaproteobacteria,3JWYR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_612758_14	1297865.APJD01000006_gene4694	2.683e-160	506.0	COG1028@1|root,COG1028@2|Bacteria,1MUBQ@1224|Proteobacteria,2TRPN@28211|Alphaproteobacteria,3JU36@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short,adh_short_C2
SX3_k127_612758_4	1297865.APJD01000006_gene4693	2.168e-272	840.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TS1R@28211|Alphaproteobacteria,3JV4N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_45145	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_612758_27	1297865.APJD01000006_gene4692	4.994e-78	261.0	COG1414@1|root,COG1414@2|Bacteria,1RG5P@1224|Proteobacteria,2U7VM@28211|Alphaproteobacteria,3JYVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	IclR helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_IclR
SX3_k127_612758_23	1297865.APJD01000006_gene4691	5.11e-120	387.0	2EAB6@1|root,334FE@2|Bacteria,1R4B5@1224|Proteobacteria,2U21J@28211|Alphaproteobacteria,3JWR9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	LTXXQ motif family protein	-	-	-	ko:K07803	ko02020,map02020	-	-	-	ko00000,ko00001,ko03110	-	-	-	LTXXQ
SX3_k127_612758_5	1297865.APJD01000006_gene4690	1.988e-261	808.0	COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2TQW5@28211|Alphaproteobacteria,3JSJN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporter, DctM component	dctM	GO:0005575,GO:0016020,GO:0016021,GO:0031224,GO:0044425	-	ko:K11690	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.56.1	-	-	DctM,DctQ
SX3_k127_612758_22	1297865.APJD01000006_gene4689	2.41e-125	401.0	COG3090@1|root,COG3090@2|Bacteria,1R3YK@1224|Proteobacteria,2TU4N@28211|Alphaproteobacteria,3JUBY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporters, DctQ component	dctQ	-	-	ko:K11689	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.56.1	-	-	DctQ
SX3_k127_612758_9	1297865.APJD01000006_gene4688	7.638e-208	649.0	COG1638@1|root,COG1638@2|Bacteria,1MVHC@1224|Proteobacteria,2TS46@28211|Alphaproteobacteria,3JSY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	dctP	-	-	ko:K11688	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.56.1	-	-	DctP
SX3_k127_612758_31	172088.AUGA01000015_gene2939	5.398e-09	60.0	COG2320@1|root,COG2320@2|Bacteria,1RH46@1224|Proteobacteria,2U2UV@28211|Alphaproteobacteria,3JX00@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GrpB protein	-	-	-	-	-	-	-	-	-	-	-	-	GrpB
SX3_k127_612758_32	1297865.APJD01000003_gene6492	9.027e-08	63.0	2BITE@1|root,32D15@2|Bacteria,1PUZ5@1224|Proteobacteria,2UNBH@28211|Alphaproteobacteria,3K28M@41294|Bradyrhizobiaceae	1297865.APJD01000003_gene6492|-	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_612758_1	1297865.APJD01000006_gene4687	0.0	1168.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,2TR1M@28211|Alphaproteobacteria,3JW8Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS_4,PAS_7,Response_reg,dCache_1
SX3_k127_612758_21	1297865.APJD01000006_gene4686	1.153e-133	432.0	COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,2U06A@28211|Alphaproteobacteria,3K5Z5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_612758_2	1297865.APJD01000006_gene4685	0.0	1026.0	COG0119@1|root,COG0119@2|Bacteria,1MUNQ@1224|Proteobacteria,2TSCJ@28211|Alphaproteobacteria,3JSNP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)	leuA	-	2.3.3.13	ko:K01649	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230	M00432	R01213	RC00004,RC00470,RC02754	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like,LeuA_dimer
SX3_k127_612758_13	1297865.APJD01000006_gene4684	1.647e-175	554.0	COG1266@1|root,COG1266@2|Bacteria,1RFM3@1224|Proteobacteria,2U8YX@28211|Alphaproteobacteria,3K3ZA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	CAAX protease self-immunity	-	-	-	ko:K07052	-	-	-	-	ko00000	-	-	-	Abi
SX3_k127_612758_20	1197906.CAJQ02000023_gene2368	7.618e-138	444.0	COG2326@1|root,COG2326@2|Bacteria,1MVE2@1224|Proteobacteria,2TSU8@28211|Alphaproteobacteria,3JTCM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polyphosphate kinase 2 (PPK2)	-	-	-	-	-	-	-	-	-	-	-	-	PPK2
SX3_k127_612758_8	1297865.APJD01000006_gene4682	3.25e-210	658.0	COG4177@1|root,COG4177@2|Bacteria,1PAW4@1224|Proteobacteria,2U0EY@28211|Alphaproteobacteria,3JT01@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_02455	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_612758_12	1297865.APJD01000006_gene4681	1.18e-179	563.0	COG0559@1|root,COG0559@2|Bacteria,1R5H9@1224|Proteobacteria,2TUJ6@28211|Alphaproteobacteria,3JSHQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_02450	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_612758_18	1297865.APJD01000006_gene4680	8.482e-142	452.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TSA6@28211|Alphaproteobacteria,3JUSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	MA20_02445	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_612758_16	1297865.APJD01000006_gene4679	1.58e-154	489.0	COG0411@1|root,COG0411@2|Bacteria,1MVAU@1224|Proteobacteria,2TVRN@28211|Alphaproteobacteria,3JW0T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	MA20_02440	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_612758_24	1297865.APJD01000006_gene4678	1.385e-107	358.0	COG3240@1|root,COG3240@2|Bacteria	2|Bacteria	I	lipase activity	-	-	-	ko:K12686	-	-	-	-	ko00000,ko02000,ko02044	1.B.12.8	-	-	Autotransporter,Lipase_GDSL,Lipase_GDSL_2,VPEP
SX3_k127_612758_17	1297865.APJD01000006_gene4677	5.477e-152	484.0	COG0494@1|root,COG0494@2|Bacteria,1RCHK@1224|Proteobacteria,2U68M@28211|Alphaproteobacteria,3JRCD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	PFAM NUDIX hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_612758_7	1297865.APJD01000006_gene4676	1.515e-211	671.0	COG0715@1|root,COG0715@2|Bacteria,1MVZE@1224|Proteobacteria,2TTD4@28211|Alphaproteobacteria,3JW2Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	MA20_02425	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1,NMT1_2
SX3_k127_612758_25	1297865.APJD01000006_gene4675	8.513e-94	308.0	COG0662@1|root,COG0662@2|Bacteria,1RBTN@1224|Proteobacteria,2U098@28211|Alphaproteobacteria,3JWCF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	ARD/ARD' family	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_6129107_5	1297865.APJD01000007_gene1844	9.756e-154	486.0	COG1024@1|root,COG1024@2|Bacteria,1R446@1224|Proteobacteria,2U280@28211|Alphaproteobacteria,3JW63@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_6129107_6	1297865.APJD01000007_gene1843	9.966e-116	372.0	COG4101@1|root,COG4101@2|Bacteria,1RB8W@1224|Proteobacteria,2TUPM@28211|Alphaproteobacteria,3JRUV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Cupin	MA20_44940	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_6129107_9	1297865.APJD01000007_gene1842	7.58e-34	132.0	COG3237@1|root,COG3237@2|Bacteria,1N7IJ@1224|Proteobacteria,2UG6K@28211|Alphaproteobacteria,3K1CB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0337 (CsbD) family	MA20_44945	-	-	-	-	-	-	-	-	-	-	-	CsbD
SX3_k127_6129107_1	1297865.APJD01000007_gene1841	1.405e-207	657.0	COG0111@1|root,COG0111@2|Bacteria,1MW0R@1224|Proteobacteria,2TWC9@28211|Alphaproteobacteria,3JVP3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	-	-	1.1.1.399,1.1.1.95	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	M00020	R01513	RC00031	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_6129107_8	1297865.APJD01000007_gene1840	2.194e-65	240.0	COG0545@1|root,COG0545@2|Bacteria,1RDA1@1224|Proteobacteria,2VF0E@28211|Alphaproteobacteria,3JZ5T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	peptidyl-prolyl cis-trans isomerase	MA20_44950	-	5.2.1.8	ko:K01802,ko:K03772	-	-	-	-	ko00000,ko01000,ko03110	-	-	-	FKBP_C,Rhodanese
SX3_k127_6129107_0	1297865.APJD01000007_gene1839	0.0	1093.0	COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,2TQWP@28211|Alphaproteobacteria,3JS58@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Gamma-glutamyltranspeptidase	MA20_44955	-	2.3.2.2,3.4.19.13	ko:K00681	ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100	-	R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935	RC00064,RC00090,RC00096	ko00000,ko00001,ko01000,ko01002	-	-	-	G_glu_transpept
SX3_k127_6129107_4	1297865.APJD01000007_gene1838	3.479e-163	513.0	COG1054@1|root,COG1054@2|Bacteria,1MUFV@1224|Proteobacteria,2TUB5@28211|Alphaproteobacteria,3JRTF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the UPF0176 family	yceA	-	-	ko:K07146	-	-	-	-	ko00000	-	-	-	Rhodanese
SX3_k127_6129107_10	196490.AUEZ01000052_gene173	1.456e-23	103.0	COG2900@1|root,COG2900@2|Bacteria,1NGFM@1224|Proteobacteria,2UFA1@28211|Alphaproteobacteria,3K06B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the SlyX family	slyX	-	-	ko:K03745	-	-	-	-	ko00000	-	-	-	SlyX
SX3_k127_6129107_3	1230476.C207_00259	3.737e-186	583.0	COG0583@1|root,COG0583@2|Bacteria,1MXZI@1224|Proteobacteria,2U0TC@28211|Alphaproteobacteria,3JUQV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6129107_7	1230476.C207_00258	2.611e-71	243.0	COG4961@1|root,COG4961@2|Bacteria,1N1I2@1224|Proteobacteria,2UBY5@28211|Alphaproteobacteria,3JZEH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TadE-like protein	-	-	-	-	-	-	-	-	-	-	-	-	TadE
SX3_k127_6129107_2	1297865.APJD01000007_gene1834	1.235e-198	623.0	COG4655@1|root,COG4655@2|Bacteria,1R41B@1224|Proteobacteria,2TVD0@28211|Alphaproteobacteria,3JSXT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative Tad-like Flp pilus-assembly	-	-	-	-	-	-	-	-	-	-	-	-	Tad,Tad_C
SX3_k127_6139834_10	1297865.APJD01000007_gene1881	9.407e-102	344.0	COG1126@1|root,COG1126@2|Bacteria,1MU9Q@1224|Proteobacteria,2TQX2@28211|Alphaproteobacteria,3K2Z6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	glnQ	-	3.6.3.21	ko:K02028,ko:K10004	ko02010,ko02020,map02010,map02020	M00230,M00236	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.3,3.A.1.3.19,3.A.1.3.4	-	-	ABC_tran
SX3_k127_6139834_8	1297865.APJD01000007_gene1880	8.785e-127	409.0	COG0765@1|root,COG0765@2|Bacteria,1MV3I@1224|Proteobacteria,2TQZ7@28211|Alphaproteobacteria,3JQXV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	gltK	-	-	ko:K02029,ko:K10002	ko02010,ko02020,map02010,map02020	M00230,M00236	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.19,3.A.1.3.4	-	-	BPD_transp_1
SX3_k127_6139834_7	1297865.APJD01000007_gene1879	4.603e-128	411.0	COG0765@1|root,COG0765@2|Bacteria,1MUVX@1224|Proteobacteria,2TRAT@28211|Alphaproteobacteria,3JVGT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K10003	ko02010,ko02020,map02010,map02020	M00230	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3.19,3.A.1.3.4	-	-	BPD_transp_1
SX3_k127_6139834_3	1297865.APJD01000007_gene1878	1.025e-161	514.0	COG0834@1|root,COG0834@2|Bacteria,1MV5D@1224|Proteobacteria,2TTXX@28211|Alphaproteobacteria,3JZNX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	gltI	-	-	ko:K02030,ko:K10001	ko02010,ko02020,map02010,map02020	M00230,M00236	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.3,3.A.1.3.19,3.A.1.3.4	-	-	SBP_bac_3
SX3_k127_6139834_5	1297865.APJD01000007_gene1877	1.077e-156	494.0	COG1011@1|root,COG1011@2|Bacteria,1NYX7@1224|Proteobacteria,2TVNX@28211|Alphaproteobacteria,3JS5G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	-	-	3.8.1.2	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	-	R05287	RC00697	ko00000,ko00001,ko01000	-	-	-	HAD_2
SX3_k127_6139834_9	1297865.APJD01000007_gene1876	6.628e-121	391.0	COG1802@1|root,COG1802@2|Bacteria,1N6IS@1224|Proteobacteria,2UIEI@28211|Alphaproteobacteria,3K609@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_6139834_4	398525.KB900701_gene7323	1.361e-161	511.0	COG1349@1|root,COG1349@2|Bacteria,1MUJG@1224|Proteobacteria,2TR8U@28211|Alphaproteobacteria,3JT88@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DeoR C terminal sensor domain	glpR	-	-	ko:K02444	-	-	-	-	ko00000,ko03000	-	-	-	DeoRC,HTH_DeoR
SX3_k127_6139834_6	1297865.APJD01000007_gene1874	1.798e-146	466.0	COG0637@1|root,COG0637@2|Bacteria,1PUMZ@1224|Proteobacteria,2U52Q@28211|Alphaproteobacteria,3JRE1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	haloacid dehalogenase-like hydrolase	-	-	3.1.3.18	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	-	R01334	RC00017	ko00000,ko00001,ko01000	-	-	-	HAD_2
SX3_k127_6139834_12	1230476.C207_00293	3.002e-23	100.0	2EQ0D@1|root,33HKU@2|Bacteria,1N7ES@1224|Proteobacteria,2UF3T@28211|Alphaproteobacteria,3K0WY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_44835	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6139834_11	1297865.APJD01000007_gene1873	2.886e-87	301.0	COG1607@1|root,COG1607@2|Bacteria,1MZAZ@1224|Proteobacteria,2U93J@28211|Alphaproteobacteria,3JY0X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Thioesterase superfamily	yciA	-	-	ko:K10806	ko01040,map01040	-	-	-	ko00000,ko00001,ko01000,ko01004	-	-	-	4HBT
SX3_k127_6139834_1	1297865.APJD01000007_gene1872	0.0	1400.0	COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,2TS8E@28211|Alphaproteobacteria,3JSUZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	enoyl-CoA hydratase isomerase	MA20_44845	-	1.1.1.35,4.2.1.17,5.1.2.3,5.3.3.8	ko:K01782,ko:K01825	ko00071,ko00280,ko00281,ko00310,ko00362,ko00380,ko00410,ko00640,ko00650,ko00903,ko00930,ko01040,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00362,map00380,map00410,map00640,map00650,map00903,map00930,map01040,map01100,map01110,map01120,map01130,map01200,map01212	M00032,M00087	R01975,R03026,R03045,R03276,R04137,R04170,R04203,R04204,R04224,R04737,R04738,R04739,R04740,R04741,R04744,R04745,R04746,R04748,R04749,R04756,R05066,R05305,R06411,R06412,R06941,R06942,R07935,R07951,R08093,R08094	RC00029,RC00099,RC00117,RC00241,RC00525,RC00831,RC00834,RC00896,RC01078,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	3HCDH,3HCDH_N,ECH_1
SX3_k127_6139834_2	1297865.APJD01000007_gene1871	1.723e-280	862.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TUX3@28211|Alphaproteobacteria,3JRR3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_44850	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_6139834_0	1297865.APJD01000007_gene1870	0.0	1494.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TSUW@28211|Alphaproteobacteria,3JU81@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Domain of unknown function (DUF1974)	fadE	-	-	ko:K06445	ko00071,ko01100,ko01212,map00071,map01100,map01212	M00087	R01175,R01279,R03777,R03857,R03990,R04751,R04754	RC00052,RC00076	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N,DUF1974
SX3_k127_6146022_6	1297865.APJD01000012_gene1365	1.53e-141	450.0	COG0825@1|root,COG0825@2|Bacteria,1MURN@1224|Proteobacteria,2TR6V@28211|Alphaproteobacteria,3JVAA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA	accA	-	2.1.3.15,6.4.1.2	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	M00082,M00376	R00742,R04386	RC00040,RC00253,RC00367	ko00000,ko00001,ko00002,ko01000	-	-	-	ACCA
SX3_k127_6146022_5	1297865.APJD01000012_gene1366	4.64e-210	654.0	COG4974@1|root,COG4974@2|Bacteria,1MVNF@1224|Proteobacteria,2TRAA@28211|Alphaproteobacteria,3JSQM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Tyrosine recombinase XerD	xerD	-	-	ko:K04763	-	-	-	-	ko00000,ko03036	-	-	-	Phage_int_SAM_1,Phage_integrase
SX3_k127_6146022_14	1297865.APJD01000012_gene1367	1.327e-22	97.0	2EGFM@1|root,33A7M@2|Bacteria,1N8GQ@1224|Proteobacteria,2UG7D@28211|Alphaproteobacteria,3K0XF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_39815	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6146022_9	1297865.APJD01000012_gene1368	2.525e-130	417.0	COG0703@1|root,COG0703@2|Bacteria,1MUFJ@1224|Proteobacteria,2U76C@28211|Alphaproteobacteria,3JU4S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate	aroK	GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615	2.7.1.71	ko:K00891	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02412	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	SKI
SX3_k127_6146022_2	1297865.APJD01000012_gene1369	2.8e-239	741.0	COG0337@1|root,COG0337@2|Bacteria,1MUBK@1224|Proteobacteria,2TRDA@28211|Alphaproteobacteria,3JSY5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)	aroB	-	2.7.1.71,4.2.3.4	ko:K01735,ko:K13829	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00022	R02412,R03083	RC00002,RC00078,RC00847	ko00000,ko00001,ko00002,ko01000	-	-	-	DHQ_synthase,SKI
SX3_k127_6146022_0	1297865.APJD01000012_gene1370	3.186e-271	836.0	COG4536@1|root,COG4536@2|Bacteria,1NZ99@1224|Proteobacteria,2TVZH@28211|Alphaproteobacteria,3JT6I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Transporter associated domain	corB	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03699	-	-	-	-	ko00000,ko02042	-	-	-	CBS,CorC_HlyC,DUF21
SX3_k127_6146022_15	319003.Bra1253DRAFT_06100	2.134e-05	52.0	2ACCG@1|root,311XQ@2|Bacteria,1N2IH@1224|Proteobacteria,2UCXM@28211|Alphaproteobacteria,3K05X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6146022_10	1297865.APJD01000012_gene1371	8.424e-93	307.0	2BRJ3@1|root,32KI7@2|Bacteria,1R9KC@1224|Proteobacteria,2VGXK@28211|Alphaproteobacteria,3JWDT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6146022_13	1230476.C207_07072	8.761e-48	177.0	COG0271@1|root,COG0271@2|Bacteria,1MZG5@1224|Proteobacteria,2UF6U@28211|Alphaproteobacteria,3K0BM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Belongs to the BolA IbaG family	bolA	GO:0006807,GO:0008150,GO:0008152,GO:0010467,GO:0019538,GO:0043170,GO:0044238,GO:0051604,GO:0071704,GO:0097428,GO:0106035,GO:1901564	-	ko:K05527,ko:K22066	-	-	-	-	ko00000,ko03000,ko03029	-	-	-	BolA
SX3_k127_6146022_7	1297865.APJD01000012_gene1372	8.162e-141	447.0	COG0484@1|root,COG0484@2|Bacteria,1QU4R@1224|Proteobacteria,2TVZG@28211|Alphaproteobacteria,3K6RQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	DnaJ molecular chaperone homology domain	dnaJ2	-	-	-	-	-	-	-	-	-	-	-	DnaJ
SX3_k127_6146022_3	1297865.APJD01000012_gene1373	2.668e-231	718.0	COG0372@1|root,COG0372@2|Bacteria,1MUKX@1224|Proteobacteria,2TSU1@28211|Alphaproteobacteria,3JR3A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Citrate synthase, C-terminal domain	citA	-	2.3.3.1	ko:K01647	ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00740	R00351	RC00004,RC00067	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Citrate_synt
SX3_k127_6146022_1	1297865.APJD01000012_gene1374	2.799e-258	797.0	COG0372@1|root,COG0372@2|Bacteria,1MXFW@1224|Proteobacteria,2TTMR@28211|Alphaproteobacteria,3JREW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Citrate synthase, C-terminal domain	MA20_39855	-	2.3.3.1	ko:K01647	ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00740	R00351	RC00004,RC00067	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Citrate_synt,HTH_17,MerR_1
SX3_k127_6146022_8	1297865.APJD01000012_gene1375	1.249e-140	447.0	COG0586@1|root,COG0586@2|Bacteria,1R0F3@1224|Proteobacteria,2U04Y@28211|Alphaproteobacteria,3JSQ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SNARE associated Golgi protein	-	-	3.6.1.27	ko:K03975,ko:K19302	ko00550,map00550	-	R05627	RC00002	ko00000,ko00001,ko01000,ko01011	-	-	-	LssY_C,PAP2,SNARE_assoc
SX3_k127_6146022_4	1297865.APJD01000012_gene1376	1.357e-219	681.0	COG0714@1|root,COG0714@2|Bacteria,1MXIW@1224|Proteobacteria,2TS1Z@28211|Alphaproteobacteria,3JS1D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobaltochelatase CobS subunit N terminal	cobS	-	6.6.1.2	ko:K09882	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	AAA_5,CbbQ_C,CobS_N
SX3_k127_6146022_11	1297865.APJD01000012_gene1377	9.99e-85	280.0	COG0454@1|root,COG0456@2|Bacteria,1N6QA@1224|Proteobacteria,2UFGS@28211|Alphaproteobacteria,3JYH5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_7
SX3_k127_6146022_12	1297865.APJD01000012_gene1378	1.043e-74	252.0	COG4547@1|root,COG4547@2|Bacteria,1MX11@1224|Proteobacteria,2TS4N@28211|Alphaproteobacteria,3JRPW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Cobalamin biosynthesis protein CobT VWA domain	cobT	-	6.6.1.2	ko:K09883	ko00860,ko01100,map00860,map01100	-	R05227	RC02000	ko00000,ko00001,ko01000	-	-	-	CobT,CobT_C
SX3_k127_6146696_8	1297865.APJD01000010_gene4913	1.073e-162	513.0	COG0583@1|root,COG0583@2|Bacteria,1R4NT@1224|Proteobacteria,2U1ZF@28211|Alphaproteobacteria,3JX1B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6146696_3	1297865.APJD01000010_gene4914	8.223e-206	643.0	COG0385@1|root,COG0385@2|Bacteria,1MUMM@1224|Proteobacteria,2TU7J@28211|Alphaproteobacteria,3JW66@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SBF-like CPA transporter family (DUF4137)	yfeH	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K14347	-	-	-	-	ko00000,ko02000,ko04147	2.A.93.1	-	-	SBF_like
SX3_k127_6146696_4	1297865.APJD01000010_gene4915	5.138e-205	638.0	2DBSD@1|root,2ZARI@2|Bacteria,1MX0F@1224|Proteobacteria,2TUNC@28211|Alphaproteobacteria,3JQX7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycine/sarcosine/betaine reductase selenoprotein B (GRDB)	MA20_42050	-	-	-	-	-	-	-	-	-	-	-	GRDB
SX3_k127_6146696_2	1297865.APJD01000010_gene4916	1.625e-208	655.0	COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,2TUX7@28211|Alphaproteobacteria,3JR9N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Sporulation related domain	MA20_36170	-	-	-	-	-	-	-	-	-	-	-	SLT,SPOR
SX3_k127_6146696_9	1297865.APJD01000010_gene4917	1.126e-150	478.0	COG1296@1|root,COG1296@2|Bacteria,1QFIN@1224|Proteobacteria,2U0SX@28211|Alphaproteobacteria,3JSAN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	AzlC protein	MA20_36175	-	-	-	-	-	-	-	-	-	-	-	AzlC
SX3_k127_6146696_15	1297865.APJD01000010_gene4918	1.11e-64	232.0	2E5FD@1|root,33072@2|Bacteria,1N14X@1224|Proteobacteria,2UCC5@28211|Alphaproteobacteria,3JZFE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Branched-chain amino acid transport protein (AzlD)	MA20_36180	-	-	-	-	-	-	-	-	-	-	-	AzlD
SX3_k127_6146696_5	1230476.C207_04156	1.531e-199	624.0	COG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria,3JV1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_6146696_10	1230476.C207_04157	1.876e-104	339.0	COG1720@1|root,COG1720@2|Bacteria,1MUF0@1224|Proteobacteria,2TVD8@28211|Alphaproteobacteria,3JSIZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterised protein family UPF0066	virR	-	-	-	-	-	-	-	-	-	-	-	UPF0066
SX3_k127_6146696_12	1297865.APJD01000010_gene4921	4.41e-84	287.0	COG0537@1|root,COG0537@2|Bacteria,1RDCJ@1224|Proteobacteria,2U956@28211|Alphaproteobacteria,3JY6T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	FG	Scavenger mRNA decapping enzyme C-term binding	MA20_36190	-	-	ko:K02503	-	-	-	-	ko00000,ko04147	-	-	-	HIT
SX3_k127_6146696_1	1297865.APJD01000010_gene4922	1.594e-280	865.0	COG3146@1|root,COG3146@2|Bacteria,1MU35@1224|Proteobacteria,2TS5I@28211|Alphaproteobacteria,3JRHQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidogalycan biosysnthesis/recognition	MA20_36195	-	-	ko:K09919	-	-	-	-	ko00000	-	-	-	FemAB_like
SX3_k127_6146696_7	1297865.APJD01000010_gene4923	1.56e-165	520.0	COG0584@1|root,COG0584@2|Bacteria,1MU8H@1224|Proteobacteria,2TV1D@28211|Alphaproteobacteria,3JR0Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	glycerophosphoryl diester phosphodiesterase	ugpQ	-	3.1.4.46	ko:K01126	ko00564,map00564	-	R01030,R01470	RC00017,RC00425	ko00000,ko00001,ko01000	-	-	-	GDPD
SX3_k127_6146696_11	1297865.APJD01000010_gene4924	7.35e-90	301.0	COG0251@1|root,COG0251@2|Bacteria,1RHMZ@1224|Proteobacteria,2U9H4@28211|Alphaproteobacteria,3JY5J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	endoribonuclease L-PSP	MA20_36205	-	-	-	-	-	-	-	-	-	-	-	YjgF_endoribonc
SX3_k127_6146696_6	1297865.APJD01000010_gene4925	8.427e-181	571.0	29APY@1|root,2ZXPR@2|Bacteria,1R817@1224|Proteobacteria,2TSBC@28211|Alphaproteobacteria,3JR6W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1849)	MA20_36210	-	-	-	-	-	-	-	-	-	-	-	DUF1849
SX3_k127_6146696_13	1297865.APJD01000010_gene4926	3.412e-76	260.0	COG0251@1|root,COG0251@2|Bacteria,1RAKQ@1224|Proteobacteria,2U5F4@28211|Alphaproteobacteria,3JYCE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	MA20_36215	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
SX3_k127_6146696_17	224911.27348412	5e-06	58.0	2978Y@1|root,2ZUGP@2|Bacteria,1RD02@1224|Proteobacteria,2U7VP@28211|Alphaproteobacteria,3JZ2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6146696_0	1297865.APJD01000010_gene4927	2.959e-281	869.0	COG0389@1|root,COG0389@2|Bacteria,1MUUH@1224|Proteobacteria,2TSJN@28211|Alphaproteobacteria,3JU40@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII	dinB	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02346	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	IMS,IMS_C
SX3_k127_6146696_16	666684.AfiDRAFT_3475	1.473e-30	124.0	2DMKE@1|root,32S6E@2|Bacteria,1N0IU@1224|Proteobacteria,2UC7Q@28211|Alphaproteobacteria,3JZCK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3572)	MA20_36230	-	-	-	-	-	-	-	-	-	-	-	DUF3572
SX3_k127_6146696_14	1230476.C207_04166	1.061e-71	244.0	COG0784@1|root,COG0784@2|Bacteria,1QU3I@1224|Proteobacteria,2TVXW@28211|Alphaproteobacteria,3JY06@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver domain	divK	-	-	ko:K11443	ko02020,ko04112,map02020,map04112	M00511	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg
SX3_k127_6150038_20	1297865.APJD01000005_gene3695	2.981e-60	208.0	COG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,2TR3S@28211|Alphaproteobacteria,3JQR2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	tolC	-	-	ko:K12340	ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133	M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821	-	-	ko00000,ko00001,ko00002,ko01504,ko02000,ko02044	1.B.17,2.A.6.2	-	-	OEP
SX3_k127_6150038_13	113395.AXAI01000009_gene2526	9.022e-179	564.0	COG3618@1|root,COG3618@2|Bacteria,1N2QM@1224|Proteobacteria,2TTZK@28211|Alphaproteobacteria,3JSUM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	MA20_15910	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
SX3_k127_6150038_1	1297865.APJD01000005_gene3693	0.0	2002.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JQRG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	MA20_15915	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
SX3_k127_6150038_9	1297865.APJD01000005_gene3692	4.696e-258	797.0	COG0845@1|root,COG0845@2|Bacteria,1MVAS@1224|Proteobacteria,2TUDB@28211|Alphaproteobacteria,3JSKM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	MA20_15920	-	-	ko:K15727	-	-	-	-	ko00000,ko02000	8.A.1.2.1	-	-	HlyD_D23
SX3_k127_6150038_7	1297865.APJD01000005_gene3691	1.877e-313	960.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TT4A@28211|Alphaproteobacteria,3JU8B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	-	-	-	-	-	-	-	-	-	-	CoA_transf_3
SX3_k127_6150038_21	1297865.APJD01000005_gene3690	1.041e-50	181.0	2CMAN@1|root,32SE6@2|Bacteria,1RIK0@1224|Proteobacteria,2U9U4@28211|Alphaproteobacteria,3JZGB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_15930	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6150038_16	1297865.APJD01000005_gene3689	1.771e-128	412.0	2BPPV@1|root,32IH2@2|Bacteria,1NFYU@1224|Proteobacteria,2UIKJ@28211|Alphaproteobacteria,3K4IG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6150038_17	1297865.APJD01000005_gene3688	1.005e-108	356.0	COG3193@1|root,COG3193@2|Bacteria,1R6E7@1224|Proteobacteria,2VG7T@28211|Alphaproteobacteria,3JW8C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haem-degrading	-	-	-	-	-	-	-	-	-	-	-	-	Haem_degrading
SX3_k127_6150038_18	316056.RPC_4081	1.973e-86	292.0	COG1943@1|root,COG1943@2|Bacteria,1RCWW@1224|Proteobacteria,2U5BB@28211|Alphaproteobacteria,3JY75@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Transposase IS200 like	-	-	-	ko:K07491	-	-	-	-	ko00000	-	-	-	Y1_Tnp
SX3_k127_6150038_0	1297865.APJD01000005_gene3687	0.0	2448.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,3JUU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337,ko:K14162	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_6150038_6	1297865.APJD01000005_gene3686	7.342e-318	980.0	COG0389@1|root,COG0389@2|Bacteria,1MU5X@1224|Proteobacteria,2TQVR@28211|Alphaproteobacteria,3JQX0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	impB/mucB/samB family	MA20_15945	-	-	ko:K14161	-	-	-	-	ko00000,ko03400	-	-	-	IMS,IMS_C
SX3_k127_6150038_23	1230476.C207_05632	0.0006667	44.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,3JUU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337,ko:K14162	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_6150038_14	1297865.APJD01000005_gene3685	6.163e-161	508.0	COG4544@1|root,COG4544@2|Bacteria,1MY56@1224|Proteobacteria,2TT91@28211|Alphaproteobacteria,3JRBP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SOS response	-	-	-	ko:K14160	-	-	-	-	ko00000,ko03400	-	-	-	-
SX3_k127_6150038_5	1297865.APJD01000005_gene3684	0.0	993.0	COG1573@1|root,COG1573@2|Bacteria,1MW8T@1224|Proteobacteria,2TSAR@28211|Alphaproteobacteria,3JS5N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	UreE urease accessory protein, C-terminal domain	MA20_15960	-	3.2.2.27	ko:K21929	ko03410,map03410	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DUF4130,UDG
SX3_k127_6150038_4	1297865.APJD01000005_gene3683	0.0	1052.0	COG0306@1|root,COG0306@2|Bacteria,1MVXK@1224|Proteobacteria,2TU98@28211|Alphaproteobacteria,3JSN4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphate transporter family	-	-	-	ko:K03306	-	-	-	-	ko00000	2.A.20	-	-	PHO4
SX3_k127_6150038_12	1297865.APJD01000005_gene3682	1.102e-195	610.0	COG0583@1|root,COG0583@2|Bacteria,1MV36@1224|Proteobacteria,2TVHU@28211|Alphaproteobacteria,3JTGW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	MA20_10350	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6150038_8	1297865.APJD01000005_gene3681	2.893e-258	799.0	COG2124@1|root,COG2124@2|Bacteria,1N0ID@1224|Proteobacteria,2TT7V@28211|Alphaproteobacteria,3JW04@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Cytochrome P450	-	-	-	ko:K21034	-	-	-	-	ko00000,ko00199	-	-	-	p450
SX3_k127_6150038_10	1297865.APJD01000005_gene3680	6.443e-257	795.0	COG1473@1|root,COG1473@2|Bacteria,1MUIV@1224|Proteobacteria,2TR5B@28211|Alphaproteobacteria,3JRHP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	amidohydrolase	MA20_15970	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20
SX3_k127_6150038_19	1297865.APJD01000005_gene3679	5.051e-83	276.0	28UEV@1|root,2ZGJV@2|Bacteria,1RFB7@1224|Proteobacteria,2U7NQ@28211|Alphaproteobacteria,3JYPJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6150038_15	1297865.APJD01000005_gene3678	7.045e-156	498.0	COG0412@1|root,COG0412@2|Bacteria,1NKIB@1224|Proteobacteria,2U933@28211|Alphaproteobacteria,3JWI1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Dienelactone hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	DLH
SX3_k127_6150038_3	1297865.APJD01000005_gene3677	0.0	1112.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,3JSZ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	GMC oxidoreductase	MA20_15975	-	1.1.99.1	ko:K00108	ko00260,ko01100,map00260,map01100	M00555	R01025	RC00087	ko00000,ko00001,ko00002,ko01000	-	-	-	GMC_oxred_C,GMC_oxred_N
SX3_k127_6150038_11	1297865.APJD01000005_gene3676	6.881e-209	649.0	COG2267@1|root,COG2267@2|Bacteria,1N8UK@1224|Proteobacteria,2U35V@28211|Alphaproteobacteria,3JX10@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_6150038_2	1297865.APJD01000005_gene3675	0.0	1292.0	COG3158@1|root,COG3158@2|Bacteria,1MUVH@1224|Proteobacteria,2TRVJ@28211|Alphaproteobacteria,3JTDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Transport of potassium into the cell	-	-	-	ko:K03549	-	-	-	-	ko00000,ko02000	2.A.72	-	-	K_trans
SX3_k127_6150038_22	1297865.APJD01000005_gene3674	7.922e-27	109.0	COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,2U6NJ@28211|Alphaproteobacteria,3JYME@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6168088_3	666684.AfiDRAFT_0882	1.082e-106	347.0	COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,2TSE3@28211|Alphaproteobacteria,3JS0H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Cation efflux family	-	-	-	-	-	-	-	-	-	-	-	-	Cation_efflux
SX3_k127_6168088_6	666684.AfiDRAFT_0883	3.664e-49	176.0	COG1937@1|root,COG1937@2|Bacteria,1N6ZN@1224|Proteobacteria,2U9SD@28211|Alphaproteobacteria,3JZR7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal-sensitive transcriptional repressor	-	-	-	-	-	-	-	-	-	-	-	-	Trns_repr_metal
SX3_k127_6168088_5	666684.AfiDRAFT_0884	6.776e-51	181.0	COG1937@1|root,COG1937@2|Bacteria,1N1ES@1224|Proteobacteria,2UCP2@28211|Alphaproteobacteria,3K06J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metal-sensitive transcriptional repressor	-	-	-	ko:K07807	-	-	-	-	ko00000	-	-	-	Trns_repr_metal
SX3_k127_6168088_1	1297863.APJF01000028_gene1372	1.785e-218	683.0	COG0845@1|root,COG0845@2|Bacteria,1MX8W@1224|Proteobacteria,2TRPM@28211|Alphaproteobacteria,3JQVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K15727	-	-	-	-	ko00000,ko02000	8.A.1.2.1	-	-	HlyD_D23
SX3_k127_6168088_0	666684.AfiDRAFT_0886	0.0	1971.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	cnrA	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
SX3_k127_6168088_4	666684.AfiDRAFT_0887	5.817e-104	348.0	COG3038@1|root,COG3038@2|Bacteria,1MZ7X@1224|Proteobacteria,2UBYU@28211|Alphaproteobacteria,3JWUN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Prokaryotic cytochrome b561	-	-	-	ko:K12262	-	-	-	-	ko00000	-	-	-	Ni_hydr_CYTB
SX3_k127_6168088_2	1297863.APJF01000028_gene1369	3.155e-184	579.0	COG1633@1|root,COG1633@2|Bacteria,1MUET@1224|Proteobacteria,2TQMZ@28211|Alphaproteobacteria,3JR4J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Rubrerythrin	MA20_19235	-	-	-	-	-	-	-	-	-	-	-	Rubrerythrin
SX3_k127_6178217_4	323098.Nwi_2933	7.693e-11	63.0	COG1475@1|root,COG1475@2|Bacteria,1MVH7@1224|Proteobacteria,2TRNA@28211|Alphaproteobacteria,3JW7V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KL	DNA methylase	-	-	-	-	-	-	-	-	-	-	-	-	N6_N4_Mtase,ParBc
SX3_k127_6178217_2	34007.IT40_00155	1.153e-87	291.0	COG3153@1|root,COG3153@2|Bacteria,1QUSG@1224|Proteobacteria	1224|Proteobacteria	S	PFAM GCN5-related N-acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_10,Acetyltransf_7
SX3_k127_6178217_3	1297865.APJD01000004_gene5283	1.321e-56	200.0	COG4453@1|root,COG4453@2|Bacteria,1PZG2@1224|Proteobacteria,2UEGS@28211|Alphaproteobacteria,3K1DE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1778)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1778
SX3_k127_6178217_5	376733.IT41_14270	5.495e-05	48.0	2ADXU@1|root,313Q1@2|Bacteria,1PSSU@1224|Proteobacteria,2V4VE@28211|Alphaproteobacteria,2PXX6@265|Paracoccus	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6178217_0	1297865.APJD01000004_gene5284	0.0	1097.0	COG1961@1|root,COG1961@2|Bacteria,1MV0C@1224|Proteobacteria,2TTJT@28211|Alphaproteobacteria,3JR4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Recombinase	-	-	-	ko:K06400	-	-	-	-	ko00000	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
SX3_k127_6178217_1	1297865.APJD01000004_gene5285	3.539e-294	905.0	COG1012@1|root,COG1012@2|Bacteria,1MVGW@1224|Proteobacteria,2TR9T@28211|Alphaproteobacteria,3JUI3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	belongs to the aldehyde dehydrogenase family	calB	-	1.2.1.68,1.2.99.10	ko:K00154,ko:K22445	-	-	-	-	ko00000,ko01000	-	-	-	Aldedh
SX3_k127_6198599_5	1297865.APJD01000014_gene503	2.731e-24	102.0	2BI42@1|root,32C96@2|Bacteria,1P79P@1224|Proteobacteria,2UWK0@28211|Alphaproteobacteria,3K5C1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6198599_4	1297865.APJD01000014_gene504	7.919e-100	327.0	COG2030@1|root,COG2030@2|Bacteria,1RHPH@1224|Proteobacteria,2U9GG@28211|Alphaproteobacteria,3JV7C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	MaoC like domain	MA20_27445	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
SX3_k127_6198599_0	1297865.APJD01000014_gene505	0.0	1172.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TRII@28211|Alphaproteobacteria,3JUCJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	AMP-binding enzyme C-terminal domain	MA20_27440	-	6.2.1.1,6.2.1.32	ko:K01895,ko:K08295	ko00010,ko00620,ko00627,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00627,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R00982,R01354	RC00004,RC00012,RC00043,RC00070,RC00174,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_6198599_2	1297865.APJD01000014_gene506	1.866e-184	578.0	COG2084@1|root,COG2084@2|Bacteria,1RA7F@1224|Proteobacteria,2UVAZ@28211|Alphaproteobacteria,3JRFH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the 3-hydroxyisobutyrate dehydrogenase family	mmsB	-	1.1.1.31	ko:K00020	ko00280,ko01100,map00280,map01100	-	R05066	RC00099	ko00000,ko00001,ko01000	-	-	-	NAD_binding_11,NAD_binding_2
SX3_k127_6198599_1	1297865.APJD01000014_gene507	2.863e-232	720.0	COG1024@1|root,COG1024@2|Bacteria,1MU0B@1224|Proteobacteria,2TQW3@28211|Alphaproteobacteria,3JT2M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	1.1.1.31,4.2.1.17	ko:K00020,ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05066,R05595,R06411,R06412,R06942,R08093	RC00099,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_2
SX3_k127_6198599_3	1297865.APJD01000014_gene508	3.26e-131	419.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TQKE@28211|Alphaproteobacteria,3JRHU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	acyl-CoA dehydrogenase	MA20_27425	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_62038_2	1297865.APJD01000003_gene6460	2.569e-153	503.0	COG0025@1|root,COG0025@2|Bacteria,1MW5T@1224|Proteobacteria,2TSHB@28211|Alphaproteobacteria,3JUQI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sodium/hydrogen exchanger family	MA20_20950	-	-	ko:K03316	-	-	-	-	ko00000	2.A.36	-	-	Na_H_Exchanger
SX3_k127_62038_1	1297865.APJD01000003_gene6461	2.013e-174	548.0	COG0457@1|root,COG0457@2|Bacteria,1N7S8@1224|Proteobacteria,2U07D@28211|Alphaproteobacteria,3JSH1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	LprI,TPR_11,TPR_2
SX3_k127_62038_0	1297865.APJD01000003_gene6462	4.777e-266	819.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TQJR@28211|Alphaproteobacteria,3JV4X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acetyl-coenzyme A synthetase N-terminus	prpE	GO:0003674,GO:0003824,GO:0003987,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006091,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0017144,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046950,GO:0046951,GO:0070013,GO:0071704,GO:1901568,GO:1901570,GO:1901576,GO:1902224	6.2.1.1,6.2.1.17	ko:K01895,ko:K01908	ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	M00357	R00235,R00236,R00316,R00926,R01354	RC00004,RC00012,RC00043,RC00070,RC02746,RC02816	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	ACAS_N,AMP-binding,AMP-binding_C
SX3_k127_6205633_2	883080.HMPREF9697_03966	1.218e-167	530.0	COG3451@1|root,COG3451@2|Bacteria,1MXH0@1224|Proteobacteria,2TR1U@28211|Alphaproteobacteria,3JRFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	component of type IV transporter system	virB4	-	-	ko:K03199	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	CagE_TrbE_VirB
SX3_k127_6205633_17	323097.Nham_4446	1.984e-52	193.0	COG3702@1|root,COG3702@2|Bacteria,1RGVU@1224|Proteobacteria,2VGS9@28211|Alphaproteobacteria,3JZRY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Type IV secretory pathway, VirB3-like protein	-	-	-	ko:K03198	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	VirB3
SX3_k127_6205633_18	323097.Nham_4447	3.058e-46	168.0	COG3838@1|root,COG3838@2|Bacteria,1NJ0X@1224|Proteobacteria,2UJTF@28211|Alphaproteobacteria,3JZZ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TrbC/VIRB2 family	virB2	-	-	ko:K03197	ko03070,ko05134,map03070,map05134	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	TrbC
SX3_k127_6205633_9	883080.HMPREF9697_03969	2.632e-99	329.0	COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,2TQTD@28211|Alphaproteobacteria,3JWNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	-	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_6205633_14	883080.HMPREF9697_03970	6.441e-76	259.0	2ED15@1|root,336Y3@2|Bacteria,1NAPB@1224|Proteobacteria,2UF6B@28211|Alphaproteobacteria,3K1FN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_12	504832.OCAR_7690	6.531e-86	292.0	COG1525@1|root,COG1525@2|Bacteria,1RI82@1224|Proteobacteria,2U9NI@28211|Alphaproteobacteria,3JXH4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	nuclease	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_16	883080.HMPREF9697_03972	1.092e-64	226.0	COG0629@1|root,COG0629@2|Bacteria,1RGKI@1224|Proteobacteria,2U8I4@28211|Alphaproteobacteria,3JYYF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Single-strand binding protein family	-	-	-	-	-	-	-	-	-	-	-	-	SSB
SX3_k127_6205633_11	883080.HMPREF9697_03973	1.874e-96	321.0	COG1525@1|root,COG1525@2|Bacteria,1RBYY@1224|Proteobacteria,2U67Z@28211|Alphaproteobacteria,3JYHY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Staphylococcal nuclease homologue	-	-	-	-	-	-	-	-	-	-	-	-	SNase
SX3_k127_6205633_8	883080.HMPREF9697_03974	2.464e-102	336.0	2FCUV@1|root,344XT@2|Bacteria,1R985@1224|Proteobacteria,2U1QG@28211|Alphaproteobacteria,3JSFT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_13	504832.OCAR_7686	1.03e-80	274.0	2ECJU@1|root,336HY@2|Bacteria,1REDG@1224|Proteobacteria,2U7ZM@28211|Alphaproteobacteria,3JYZ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_3	504832.OCAR_7684	2.884e-134	433.0	2CEVM@1|root,31NE7@2|Bacteria,1R9K7@1224|Proteobacteria,2U3J6@28211|Alphaproteobacteria,3JVF9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_19	1429916.X566_00430	2.129e-38	148.0	2ACIH@1|root,3124N@2|Bacteria,1N2YU@1224|Proteobacteria,2UDS3@28211|Alphaproteobacteria,3K0HW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_5	323097.Nham_4466	5.798e-122	394.0	COG3916@1|root,COG3916@2|Bacteria,1MXFA@1224|Proteobacteria,2U30F@28211|Alphaproteobacteria,3JSIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	QT	Autoinducer	mrlI	-	2.3.1.228,2.3.1.229	ko:K18096	ko02024,map02024	-	-	-	ko00000,ko00001,ko01000	-	-	-	Autoind_synth
SX3_k127_6205633_10	754035.Mesau_00923	4.477e-98	326.0	COG2135@1|root,COG2135@2|Bacteria,1RAJW@1224|Proteobacteria,2U6M5@28211|Alphaproteobacteria,43P2I@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	S	Belongs to the SOS response-associated peptidase family	-	-	-	-	-	-	-	-	-	-	-	-	SRAP
SX3_k127_6205633_21	1297865.APJD01000051_gene6882	1.38e-17	87.0	2EBH9@1|root,335HS@2|Bacteria,1N7PX@1224|Proteobacteria,2UFFE@28211|Alphaproteobacteria,3K0ZS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_1	883080.HMPREF9697_03922	3.324e-185	591.0	COG4643@1|root,COG4643@2|Bacteria,1Q8J5@1224|Proteobacteria,2U153@28211|Alphaproteobacteria,3JU1P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3991)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3991,Toprim_2
SX3_k127_6205633_15	883080.HMPREF9697_03923	4.636e-69	236.0	2BXJY@1|root,32R1H@2|Bacteria,1R6DI@1224|Proteobacteria,2U5TS@28211|Alphaproteobacteria,3JYDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_6	883080.HMPREF9697_03924	1.689e-116	384.0	2BVGN@1|root,32QVF@2|Bacteria,1N2J6@1224|Proteobacteria,2UC53@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_22	883080.HMPREF9697_03924	1.082e-08	59.0	2BVGN@1|root,32QVF@2|Bacteria,1N2J6@1224|Proteobacteria,2UC53@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6205633_4	883080.HMPREF9697_03925	1.903e-129	414.0	28M5I@1|root,2ZAJA@2|Bacteria,1R4JP@1224|Proteobacteria,2U05N@28211|Alphaproteobacteria,3JW0Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1419)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1419
SX3_k127_6205633_0	883080.HMPREF9697_03926	0.0	3221.0	COG0553@1|root,COG0827@1|root,COG4646@1|root,COG0553@2|Bacteria,COG0827@2|Bacteria,COG4646@2|Bacteria,1PGZG@1224|Proteobacteria,2TVEU@28211|Alphaproteobacteria,3JVU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DEAD-like helicases superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,N6_Mtase,ResIII,SNF2_N
SX3_k127_6226205_3	172088.AUGA01000002_gene5928	4.939e-51	181.0	COG1396@1|root,COG1396@2|Bacteria,1RDBW@1224|Proteobacteria,2U7CY@28211|Alphaproteobacteria,3JY0P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cro/C1-type HTH DNA-binding domain	QU41_21520	-	-	-	-	-	-	-	-	-	-	-	HTH_3
SX3_k127_6226205_2	1297865.APJD01000007_gene2334	6.626e-55	199.0	29CMP@1|root,2ZZJY@2|Bacteria,1N0QN@1224|Proteobacteria,2UCPN@28211|Alphaproteobacteria,3K0CR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6226205_0	1297865.APJD01000007_gene2333	1.448e-231	720.0	COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,2TSXM@28211|Alphaproteobacteria,3JUNR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CE	Isocitrate/isopropylmalate dehydrogenase	MA20_17220	GO:0006082,GO:0006575,GO:0006732,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0019297,GO:0019298,GO:0019752,GO:0032787,GO:0042398,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576	1.1.1.85	ko:K00052	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R00994,R04426,R10052	RC00084,RC00417,RC03036	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Iso_dh,MoCF_biosynth
SX3_k127_6226205_1	1297865.APJD01000007_gene2332	7.343e-83	275.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2TTMV@28211|Alphaproteobacteria,3JR4E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	alcohol dehydrogenase	MA20_17225	-	1.1.1.1	ko:K00001,ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_6227295_2	1297865.APJD01000001_gene5884	6.536e-96	316.0	COG1430@1|root,COG1430@2|Bacteria,1MZBJ@1224|Proteobacteria,2UBSI@28211|Alphaproteobacteria,3JY6D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized ACR, COG1430	-	-	-	ko:K09005	-	-	-	-	ko00000	-	-	-	DUF192
SX3_k127_6227295_1	398525.KB900701_gene4778	6.734e-136	433.0	COG1278@1|root,COG1278@2|Bacteria,1RAUE@1224|Proteobacteria,2U0S7@28211|Alphaproteobacteria,3JS7P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cold shock protein domain	cspB	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
SX3_k127_6227295_0	1297865.APJD01000001_gene5886	1.74e-165	520.0	COG0846@1|root,COG0846@2|Bacteria,1MUK1@1224|Proteobacteria,2TV1Q@28211|Alphaproteobacteria,3JTG8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form	MA20_30275	-	-	ko:K12410	-	-	-	-	ko00000,ko01000	-	-	-	SIR2
SX3_k127_6227295_7	1230476.C207_01424	3.009e-23	99.0	2AM3D@1|root,31BXH@2|Bacteria,1N9UP@1224|Proteobacteria,2UGSN@28211|Alphaproteobacteria,3K12S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6227295_4	1297865.APJD01000001_gene5887	2.888e-48	175.0	2AE7X@1|root,3141X@2|Bacteria,1N8Y4@1224|Proteobacteria,2UF6Q@28211|Alphaproteobacteria,3K19M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6227295_8	1230476.C207_01422	1.808e-13	70.0	2AHP9@1|root,3181C@2|Bacteria,1NMJQ@1224|Proteobacteria,2UK1S@28211|Alphaproteobacteria,3K246@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6227295_5	1230476.C207_01421	2.424e-29	117.0	29CKJ@1|root,2ZZIW@2|Bacteria,1N0KB@1224|Proteobacteria,2UC5F@28211|Alphaproteobacteria,3K05T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6227295_6	172088.AUGA01000042_gene4740	4.689e-25	107.0	2AH8T@1|root,317IV@2|Bacteria,1NJZ1@1224|Proteobacteria,2UM03@28211|Alphaproteobacteria,3K1Z2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6227295_3	1297865.APJD01000001_gene5891	5.615e-75	251.0	COG0346@1|root,COG0346@2|Bacteria,1RCYX@1224|Proteobacteria,2U7A8@28211|Alphaproteobacteria,3JVYC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	gloA	GO:0003674,GO:0003824,GO:0004462,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016846,GO:0034641,GO:0043603,GO:0044237,GO:0051186,GO:0071704,GO:1901564	4.4.1.5	ko:K01759	ko00620,map00620	-	R02530	RC00004,RC00740	ko00000,ko00001,ko01000	-	-	-	Glyoxalase
SX3_k127_6246850_2	1297865.APJD01000005_gene3899	1.049e-205	640.0	COG4213@1|root,COG4213@2|Bacteria,1MX63@1224|Proteobacteria,2TQQW@28211|Alphaproteobacteria,3JU57@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Periplasmic binding protein domain	chvE	GO:0005575,GO:0005623,GO:0042597,GO:0044464	-	ko:K02058,ko:K10546	ko02010,map02010	M00216,M00221	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2,3.A.1.2.5	-	-	Peripla_BP_4
SX3_k127_6246850_0	1297865.APJD01000005_gene3900	0.0	1026.0	COG1129@1|root,COG1129@2|Bacteria,1MU22@1224|Proteobacteria,2TQJV@28211|Alphaproteobacteria,3JQYV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	ABC transporter	gguA	-	3.6.3.17	ko:K10548	ko02010,map02010	M00216	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.2.5	-	-	ABC_tran
SX3_k127_6246850_1	1297865.APJD01000005_gene3901	9.969e-243	752.0	COG4214@1|root,COG4214@2|Bacteria,1MXXS@1224|Proteobacteria,2TR9B@28211|Alphaproteobacteria,3JTFZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Branched-chain amino acid transport system / permease component	gguB	GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0016020,GO:0016021,GO:0019321,GO:0031224,GO:0042732,GO:0044238,GO:0044281,GO:0044425,GO:0044464,GO:0071704,GO:0071944	-	ko:K10547	ko02010,map02010	M00216	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.2.5	-	-	BPD_transp_2
SX3_k127_6246850_3	1297865.APJD01000005_gene3902	4.366e-15	76.0	COG0483@1|root,COG0483@2|Bacteria,1NFR1@1224|Proteobacteria,2U1X2@28211|Alphaproteobacteria,3JSHH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Inositol monophosphatase family	-	-	3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
SX3_k127_6257063_12	1230476.C207_01327	2.777e-82	287.0	COG3909@1|root,COG3909@2|Bacteria,1N6Z5@1224|Proteobacteria,2U5I1@28211|Alphaproteobacteria,3JY1R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C'	cycF	GO:0005575,GO:0005623,GO:0042597,GO:0044464	-	-	-	-	-	-	-	-	-	-	Cytochrom_C_2
SX3_k127_6257063_0	1297865.APJD01000047_gene4793	0.0	1552.0	COG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,3JS8F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	MA20_08005	-	1.2.5.3	ko:K03520	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	Ald_Xan_dh_C,Ald_Xan_dh_C2
SX3_k127_6257063_2	1297865.APJD01000047_gene4794	7.473e-310	952.0	COG0728@1|root,COG0728@2|Bacteria,1MUH0@1224|Proteobacteria,2TS44@28211|Alphaproteobacteria,3JQRJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane	murJ	-	-	ko:K03980	-	-	-	-	ko00000,ko01011,ko02000	2.A.66.4	-	-	MVIN
SX3_k127_6257063_6	1297865.APJD01000047_gene4795	4.139e-247	764.0	COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,2TRIQ@28211|Alphaproteobacteria,3JSYW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the DegT DnrJ EryC1 family	MA20_07980	-	-	-	-	-	-	-	-	-	-	-	DegT_DnrJ_EryC1
SX3_k127_6257063_8	1297865.APJD01000047_gene4796	1.686e-210	657.0	COG0673@1|root,COG0673@2|Bacteria,1MV7C@1224|Proteobacteria,2TQM1@28211|Alphaproteobacteria,3JSWB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase family, NAD-binding Rossmann fold	MA20_07975	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
SX3_k127_6257063_3	1297865.APJD01000047_gene4797	1.778e-296	912.0	COG0662@1|root,COG0836@1|root,COG0662@2|Bacteria,COG0836@2|Bacteria,1MV39@1224|Proteobacteria,2TT0R@28211|Alphaproteobacteria,3JS2Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	Belongs to the mannose-6-phosphate isomerase type 2 family	manC	-	2.7.7.13,5.3.1.8	ko:K00971,ko:K16011	ko00051,ko00520,ko01100,ko01110,ko01130,ko02025,map00051,map00520,map01100,map01110,map01130,map02025	M00114,M00361,M00362	R00885,R01819	RC00002,RC00376	ko00000,ko00001,ko00002,ko01000	-	-	-	MannoseP_isomer,NTP_transferase
SX3_k127_6257063_9	1297865.APJD01000047_gene4798	6.71e-208	647.0	COG0392@1|root,COG0392@2|Bacteria,1MVZ8@1224|Proteobacteria,2TTDM@28211|Alphaproteobacteria,3JS9U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lysylphosphatidylglycerol synthase TM region	-	-	-	ko:K07027	-	-	-	-	ko00000,ko02000	4.D.2	-	-	LPG_synthase_TM
SX3_k127_6257063_11	1297865.APJD01000047_gene4799	1.472e-199	625.0	COG0472@1|root,COG0472@2|Bacteria,1MWYW@1224|Proteobacteria,2TTW6@28211|Alphaproteobacteria,3JVCM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferase family 4	mraY2	-	2.7.8.33,2.7.8.35	ko:K02851,ko:K13007	-	-	R08856	RC00002	ko00000,ko01000,ko01003,ko01005	-	-	-	Glycos_transf_4
SX3_k127_6257063_10	1297865.APJD01000047_gene4800	7.325e-202	632.0	COG0451@1|root,COG0451@2|Bacteria,1MX2J@1224|Proteobacteria,2TVNU@28211|Alphaproteobacteria,3JQWN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Male sterility protein	-	-	5.1.3.2,5.1.3.26	ko:K01784,ko:K19997	ko00052,ko00520,ko01100,map00052,map00520,map01100	M00361,M00362,M00632	R00291,R02984	RC00289	ko00000,ko00001,ko00002,ko01000	-	-	-	Epimerase
SX3_k127_6257063_5	1297865.APJD01000047_gene4801	1.151e-247	767.0	COG0438@1|root,COG0438@2|Bacteria,1MY5T@1224|Proteobacteria,2TSZW@28211|Alphaproteobacteria,3JRMR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Glycosyl transferases group 1	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_6257063_1	1297865.APJD01000047_gene4802	0.0	1207.0	COG1086@1|root,COG1086@2|Bacteria,1MWKY@1224|Proteobacteria,2TT4K@28211|Alphaproteobacteria,3JR9W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	Polysaccharide biosynthesis protein	MA20_07945	-	-	ko:K13013	-	-	-	-	ko00000,ko01005	-	-	-	CoA_binding_3,Polysacc_synt_2
SX3_k127_6257063_4	1297865.APJD01000047_gene4803	3.175e-261	809.0	COG3307@1|root,COG3307@2|Bacteria,1R495@1224|Proteobacteria,2TQUQ@28211|Alphaproteobacteria,3JTQD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	O-Antigen ligase	-	-	-	-	-	-	-	-	-	-	-	-	Wzy_C
SX3_k127_6257063_7	1297865.APJD01000047_gene4804	1.37e-211	658.0	COG0615@1|root,COG2870@1|root,COG0615@2|Bacteria,COG2870@2|Bacteria,1MV3Z@1224|Proteobacteria,2TU12@28211|Alphaproteobacteria,3JSR3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose	hldE	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0019200,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046835,GO:0071704	2.7.1.167,2.7.7.70	ko:K03272	ko00540,ko01100,map00540,map01100	M00064	R05644,R05646	RC00002,RC00078	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	CTP_transf_like,PfkB
SX3_k127_626828_8	1297865.APJD01000005_gene3622	5.093e-166	522.0	COG3826@1|root,COG3826@2|Bacteria,1MWVV@1224|Proteobacteria,2TQMH@28211|Alphaproteobacteria,3JQX5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxygenase, catalysing oxidative methylation of damaged DNA	MA20_16285	-	-	ko:K09990	-	-	-	-	ko00000	-	-	-	Oxygenase-NA
SX3_k127_626828_9	1297865.APJD01000005_gene3623	3.894e-143	454.0	COG3145@1|root,COG3145@2|Bacteria,1N5HB@1224|Proteobacteria,2U5C6@28211|Alphaproteobacteria,3JRGW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	2OG-Fe(II) oxygenase superfamily	alkB	-	1.14.11.33	ko:K03919	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	2OG-FeII_Oxy_2
SX3_k127_626828_1	1297865.APJD01000005_gene3624	1.717e-253	786.0	COG2211@1|root,COG2211@2|Bacteria,1PF5K@1224|Proteobacteria,2TSWN@28211|Alphaproteobacteria,3JW1C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_626828_0	1297865.APJD01000005_gene3625	0.0	1098.0	COG0028@1|root,COG0028@2|Bacteria,1MWVW@1224|Proteobacteria,2TTH5@28211|Alphaproteobacteria,3JSVY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	Belongs to the TPP enzyme family	ilvB	-	2.2.1.6	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R00006,R00014,R00226,R03050,R04672,R04673,R08648	RC00027,RC00106,RC01192,RC02744,RC02893	ko00000,ko00001,ko00002,ko01000	-	-	-	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
SX3_k127_626828_6	1297865.APJD01000005_gene3626	3.696e-190	595.0	COG0179@1|root,COG0179@2|Bacteria,1MUPF@1224|Proteobacteria,2TQMB@28211|Alphaproteobacteria,3JSMG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	MA20_16265	-	-	-	-	-	-	-	-	-	-	-	FAA_hydrolase
SX3_k127_626828_3	1297865.APJD01000005_gene3627	1.253e-227	704.0	COG0346@1|root,COG0346@2|Bacteria,1MUWY@1224|Proteobacteria,2TTMJ@28211|Alphaproteobacteria,3JRYD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	MA20_16260	-	1.13.11.2	ko:K00446	ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220	M00569	R00816,R04089,R05295,R05404,R05406,R07795	RC00387,RC00643,RC01075,RC01364,RC01914	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Glyoxalase
SX3_k127_626828_5	1297865.APJD01000005_gene3628	8.042e-207	643.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JVTN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	belongs to the aldehyde dehydrogenase family	hpaE	-	1.2.1.60,1.2.1.8	ko:K00130,ko:K00151	ko00260,ko00350,ko01100,ko01120,ko01220,map00260,map00350,map01100,map01120,map01220	M00533,M00555	R02565,R02566,R04418	RC00080,RC00254	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_626828_10	1230476.C207_05575	1.03e-121	391.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JVTN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	belongs to the aldehyde dehydrogenase family	hpaE	-	1.2.1.60,1.2.1.8	ko:K00130,ko:K00151	ko00260,ko00350,ko01100,ko01120,ko01220,map00260,map00350,map01100,map01120,map01220	M00533,M00555	R02565,R02566,R04418	RC00080,RC00254	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_626828_12	716928.AJQT01000095_gene4808	5.479e-33	132.0	COG3232@1|root,COG3232@2|Bacteria,1RB8A@1224|Proteobacteria,2U5N5@28211|Alphaproteobacteria,4BFYQ@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	5-carboxymethyl-2-hydroxymuconate isomerase	hpcD	-	5.3.3.10	ko:K01826	ko00350,ko01120,ko01220,map00350,map01120,map01220	M00533	R04379,R04482	RC01141,RC01162	ko00000,ko00001,ko00002,ko01000	-	-	-	CHMI
SX3_k127_626828_7	1297865.APJD01000005_gene3630	1.632e-170	536.0	COG3971@1|root,COG3971@2|Bacteria,1MVVV@1224|Proteobacteria,2TUWC@28211|Alphaproteobacteria,3JTMU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	hydratase'	hpaH	-	-	ko:K02509	ko00350,ko01120,map00350,map01120	-	R04132,R06897	RC01615,RC02595	ko00000,ko00001,ko01000	-	-	-	FAA_hydrolase
SX3_k127_626828_11	1297865.APJD01000005_gene3631	1.337e-99	326.0	COG1846@1|root,COG1846@2|Bacteria,1RCY7@1224|Proteobacteria,2UAR3@28211|Alphaproteobacteria,3JV5I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_626828_4	1297865.APJD01000005_gene3632	1.631e-211	660.0	COG1802@1|root,COG1802@2|Bacteria,1R6P1@1224|Proteobacteria,2U6V2@28211|Alphaproteobacteria,3JVTY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_626828_2	1230476.C207_05580	3.886e-242	749.0	COG0683@1|root,COG0683@2|Bacteria,1N3V5@1224|Proteobacteria,2U1KS@28211|Alphaproteobacteria,3JVMY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_6268608_3	1297865.APJD01000006_gene4359	1.14e-229	711.0	COG0665@1|root,COG0665@2|Bacteria,1MVG3@1224|Proteobacteria,2TRYR@28211|Alphaproteobacteria,3JV5E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	MA20_04245	-	-	-	-	-	-	-	-	-	-	-	DAO
SX3_k127_6268608_8	1297865.APJD01000006_gene4360	1.379e-56	203.0	COG1034@1|root,COG1034@2|Bacteria,1N72X@1224|Proteobacteria,2UH2S@28211|Alphaproteobacteria,3JZKE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	2Fe-2S iron-sulfur cluster binding domain	MA20_04240	-	-	-	-	-	-	-	-	-	-	-	Fer2_4
SX3_k127_6268608_0	1297865.APJD01000006_gene4361	9.075e-294	909.0	COG0446@1|root,COG2906@1|root,COG0446@2|Bacteria,COG2906@2|Bacteria,1MXA9@1224|Proteobacteria,2TVYN@28211|Alphaproteobacteria,3JRFM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	BFD-like [2Fe-2S] binding domain	ooxA	-	-	-	-	-	-	-	-	-	-	-	Fer2_BFD,Pyr_redox_2
SX3_k127_6268608_2	1297865.APJD01000006_gene4362	7.981e-239	749.0	COG0665@1|root,COG0665@2|Bacteria,1MXM0@1224|Proteobacteria,2TRR8@28211|Alphaproteobacteria,3JWH9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	FAD dependent oxidoreductase	MA20_04230	-	1.5.3.1	ko:K00303	ko00260,ko01100,map00260,map01100	-	R00610	RC00060,RC00557	ko00000,ko00001,ko01000	-	-	-	DAO
SX3_k127_6268608_7	1297865.APJD01000006_gene4363	1.38e-66	227.0	COG0251@1|root,COG0251@2|Bacteria,1RDJX@1224|Proteobacteria,2U7F4@28211|Alphaproteobacteria,3JYT7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	MA20_04225	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
SX3_k127_6268608_6	1230476.C207_04937	4.331e-203	633.0	COG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria,3JSD4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	-	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_6268608_5	1297865.APJD01000006_gene4365	3.62e-203	636.0	COG2358@1|root,COG2358@2|Bacteria,1NRH6@1224|Proteobacteria,2TT34@28211|Alphaproteobacteria,3JTPF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NMT1-like family	-	-	-	ko:K07080	-	-	-	-	ko00000	-	-	-	NMT1_3
SX3_k127_6268608_1	1297865.APJD01000006_gene4366	4.518e-252	805.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2U0U4@28211|Alphaproteobacteria,3JTUS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	MA20_10205	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_6268608_4	1297865.APJD01000006_gene4367	3.763e-227	705.0	COG0303@1|root,COG0303@2|Bacteria,1PDCE@1224|Proteobacteria,2TR67@28211|Alphaproteobacteria,3JS3P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	MoeA N-terminal region (domain I and II)	-	-	-	-	-	-	-	-	-	-	-	-	MoCF_biosynth,MoeA_C,MoeA_N
SX3_k127_6268608_9	1297865.APJD01000006_gene4368	5.104e-47	169.0	COG0303@1|root,COG1910@1|root,COG0303@2|Bacteria,COG1910@2|Bacteria,1MVD5@1224|Proteobacteria,2TVN2@28211|Alphaproteobacteria,3JU2X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	HP	MoeA C-terminal region (domain IV)	MA20_10225	-	2.10.1.1	ko:K03750,ko:K07219	ko00790,ko01100,map00790,map01100	-	R09735	RC03462	ko00000,ko00001,ko01000	-	-	-	MoCF_biosynth,MoeA_C,MoeA_N,PBP_like
SX3_k127_6291967_3	1297865.APJD01000014_gene792	4.534e-73	247.0	COG0822@1|root,COG0822@2|Bacteria,1RDGB@1224|Proteobacteria,2U74A@28211|Alphaproteobacteria,3JRJR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NifU-like N terminal domain	nifU	-	-	-	-	-	-	-	-	-	-	-	NifU_N
SX3_k127_6291967_1	1297865.APJD01000014_gene791	3.552e-143	459.0	COG0302@1|root,COG0302@2|Bacteria,1MY3N@1224|Proteobacteria,2TSZI@28211|Alphaproteobacteria,3JSEC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	GTP cyclohydrolase	folE	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617	3.5.4.16	ko:K01495	ko00790,ko01100,map00790,map01100	M00126,M00841,M00842,M00843	R00428,R04639,R05046,R05048	RC00263,RC00294,RC00323,RC00945,RC01188	ko00000,ko00001,ko00002,ko01000	-	-	-	GTP_cyclohydroI
SX3_k127_6291967_2	1297865.APJD01000014_gene790	2.716e-90	300.0	COG0139@1|root,COG0139@2|Bacteria,1MW67@1224|Proteobacteria,2UCKH@28211|Alphaproteobacteria,3JY07@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP	hisI	-	3.5.4.19,3.6.1.31	ko:K01496,ko:K11755	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	M00026	R04035,R04037	RC00002,RC01055	ko00000,ko00001,ko00002,ko01000	-	-	-	PRA-CH,PRA-PH
SX3_k127_6291967_0	1297865.APJD01000014_gene789	2.447e-176	555.0	COG0741@1|root,COG0741@2|Bacteria,1MUMA@1224|Proteobacteria,2TSA5@28211|Alphaproteobacteria,3JQZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	transglycosylase	-	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_6294060_7	398525.KB900701_gene6345	4.276e-09	61.0	COG1840@1|root,COG1840@2|Bacteria,1MXZ8@1224|Proteobacteria,2VBE8@28211|Alphaproteobacteria,3JW19@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Bacterial extracellular solute-binding protein	-	-	-	-	-	-	-	-	-	-	-	-	SBP_bac_6
SX3_k127_6294060_0	1297865.APJD01000043_gene5809	3.508e-222	691.0	COG2159@1|root,COG2159@2|Bacteria,1R5PG@1224|Proteobacteria,2U2G9@28211|Alphaproteobacteria,3JWBY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Amidohydrolase	-	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_2
SX3_k127_6294060_6	1297865.APJD01000043_gene5810	8.354e-47	170.0	29D00@1|root,2ZZY2@2|Bacteria,1N23H@1224|Proteobacteria,2UC7D@28211|Alphaproteobacteria,3K0TE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6294060_4	1297865.APJD01000043_gene5811	5.149e-155	491.0	COG0664@1|root,COG0664@2|Bacteria,1MXID@1224|Proteobacteria,2TT42@28211|Alphaproteobacteria,3JUY5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, cAMP Regulatory protein	MA20_38050	-	-	ko:K10914	ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_Crp_2,cNMP_binding
SX3_k127_6294060_2	1297865.APJD01000043_gene5812	1.904e-189	591.0	COG1409@1|root,COG1409@2|Bacteria,1MWKX@1224|Proteobacteria,2U5HA@28211|Alphaproteobacteria,3K67Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes	cpdA	-	3.1.4.53	ko:K03651	ko00230,ko02025,map00230,map02025	-	R00191	RC00296	ko00000,ko00001,ko01000	-	-	-	Metallophos
SX3_k127_6294060_1	1297865.APJD01000043_gene5813	3.709e-220	687.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,3JS4Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02052	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	ABC_tran,TOBE_2
SX3_k127_6294060_3	1297865.APJD01000043_gene5814	1.085e-155	494.0	COG1177@1|root,COG1177@2|Bacteria,1N0SF@1224|Proteobacteria,2TRZ7@28211|Alphaproteobacteria,3JWY9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02053	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
SX3_k127_6294060_5	1297865.APJD01000043_gene5815	9.958e-143	454.0	COG0555@1|root,COG0555@2|Bacteria,1NQQ5@1224|Proteobacteria,2TQUP@28211|Alphaproteobacteria,3JX5N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02053	ko02024,map02024	M00193	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11	-	-	BPD_transp_1
SX3_k127_6296936_6	1297865.APJD01000022_gene356	9.568e-248	767.0	COG2304@1|root,COG2304@2|Bacteria,1PBVT@1224|Proteobacteria,2U3NK@28211|Alphaproteobacteria,3K1N3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	von Willebrand factor, type A	-	-	-	ko:K07114	-	-	-	-	ko00000,ko02000	1.A.13.2.2,1.A.13.2.3	-	-	VWA,VWA_2
SX3_k127_6296936_14	1297865.APJD01000022_gene355	4.129e-132	422.0	COG0454@1|root,COG0456@2|Bacteria,1N3WW@1224|Proteobacteria,2U0YR@28211|Alphaproteobacteria,3JWJI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	acetyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_6296936_13	1297865.APJD01000022_gene354	2.671e-136	437.0	COG2057@1|root,COG2057@2|Bacteria,1RA4V@1224|Proteobacteria,2TQS5@28211|Alphaproteobacteria,3JRZ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Coenzyme A transferase	scoB	-	2.8.3.5	ko:K01029	ko00072,ko00280,ko00650,map00072,map00280,map00650	-	R00410	RC00014	ko00000,ko00001,ko01000	-	-	-	CoA_trans
SX3_k127_6296936_12	1297865.APJD01000022_gene353	3.036e-148	472.0	COG1788@1|root,COG1788@2|Bacteria,1MVEI@1224|Proteobacteria,2TTE6@28211|Alphaproteobacteria,3JRJ3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Coenzyme A transferase	scoA	-	2.8.3.5	ko:K01028	ko00072,ko00280,ko00650,map00072,map00280,map00650	-	R00410	RC00014	ko00000,ko00001,ko01000	-	-	-	CoA_trans
SX3_k127_6296936_1	1297865.APJD01000022_gene352	0.0	1249.0	COG2982@1|root,COG2982@2|Bacteria,1NVUY@1224|Proteobacteria,2TVI7@28211|Alphaproteobacteria,3JQXF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	AsmA-like C-terminal region	MA20_03680	-	-	ko:K07289	-	-	-	-	ko00000	-	-	-	AsmA,AsmA_2
SX3_k127_6296936_3	1297865.APJD01000022_gene351	5.106e-313	961.0	COG1653@1|root,COG1653@2|Bacteria,1R0XV@1224|Proteobacteria,2TU4B@28211|Alphaproteobacteria,3JSKU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	MA20_03685	-	-	ko:K02027	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	SBP_bac_8
SX3_k127_6296936_9	1297865.APJD01000022_gene350	1.316e-188	589.0	COG1175@1|root,COG1175@2|Bacteria,1P9M5@1224|Proteobacteria,2TU2U@28211|Alphaproteobacteria,3JW1F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	MA20_03690	-	-	ko:K02025	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_6296936_10	1297865.APJD01000022_gene349	1.323e-176	570.0	COG0395@1|root,COG0395@2|Bacteria,1QW7F@1224|Proteobacteria,2TR3V@28211|Alphaproteobacteria,3JSTC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	MA20_03695	-	-	ko:K02026	-	M00207	-	-	ko00000,ko00002,ko02000	3.A.1.1	-	-	BPD_transp_1
SX3_k127_6296936_11	1297865.APJD01000022_gene348	7.91e-163	514.0	COG1177@1|root,COG1177@2|Bacteria,1MVC5@1224|Proteobacteria,2TRRJ@28211|Alphaproteobacteria,3JT34@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Binding-protein-dependent transport system inner membrane component	potI	GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0016020,GO:0016021,GO:0031224,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351	-	ko:K11074	ko02010,map02010	M00300	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.2	-	-	BPD_transp_1
SX3_k127_6296936_8	1297865.APJD01000022_gene347	1.067e-188	590.0	COG1176@1|root,COG1176@2|Bacteria,1MVGM@1224|Proteobacteria,2TSFD@28211|Alphaproteobacteria,3JSPC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	potH	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351	-	ko:K11075	ko02010,map02010	M00300	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.2	-	-	BPD_transp_1
SX3_k127_6296936_7	1297865.APJD01000022_gene346	1.95e-241	748.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria,3JTXD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system	potG	GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0016020,GO:0016021,GO:0031224,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351	-	ko:K11076	ko02010,map02010	M00300	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.11.2	-	-	ABC_tran,TOBE_2
SX3_k127_6296936_4	1297865.APJD01000022_gene345	7.933e-283	870.0	COG0457@1|root,COG0457@2|Bacteria,1N01S@1224|Proteobacteria,2TSR4@28211|Alphaproteobacteria,3JTG9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	COG0457 FOG TPR repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6296936_2	1297865.APJD01000022_gene344	0.0	996.0	COG0488@1|root,COG0488@2|Bacteria,1MX6Y@1224|Proteobacteria,2U10A@28211|Alphaproteobacteria,3JV1Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ATPases associated with a variety of cellular activities	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
SX3_k127_6296936_0	1297865.APJD01000022_gene343	0.0	1749.0	COG5000@1|root,COG5001@1|root,COG5000@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JT1B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	MA20_03720	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_4,PAS_7,PAS_8,PAS_9
SX3_k127_6296936_5	1297865.APJD01000022_gene342	7.427e-251	775.0	COG0579@1|root,COG0579@2|Bacteria,1N0QB@1224|Proteobacteria,2TU6K@28211|Alphaproteobacteria,3JSGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FAD dependent oxidoreductase	MA20_03725	-	-	-	-	-	-	-	-	-	-	-	DAO
SX3_k127_6296936_15	1297865.APJD01000022_gene341	1.444e-38	144.0	2AGHS@1|root,316QC@2|Bacteria,1NI78@1224|Proteobacteria,2UKZ2@28211|Alphaproteobacteria,3K1UI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6296936_18	1230476.C207_04412	2.17e-09	58.0	COG5481@1|root,COG5481@2|Bacteria,1NG9U@1224|Proteobacteria,2UFXJ@28211|Alphaproteobacteria,3K07E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF465)	MA20_03740	-	-	-	-	-	-	-	-	-	-	-	DUF465
SX3_k127_6296936_17	1230476.C207_04412	6.997e-36	136.0	COG5481@1|root,COG5481@2|Bacteria,1NG9U@1224|Proteobacteria,2UFXJ@28211|Alphaproteobacteria,3K07E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF465)	MA20_03740	-	-	-	-	-	-	-	-	-	-	-	DUF465
SX3_k127_6296936_16	1297865.APJD01000022_gene339	1.384e-36	139.0	2AC58@1|root,311PK@2|Bacteria,1N24U@1224|Proteobacteria,2UDT1@28211|Alphaproteobacteria,3K01I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_03745	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6299245_14	172088.AUGA01000021_gene5186	9.273e-138	440.0	COG1028@1|root,COG1028@2|Bacteria,1MXNQ@1224|Proteobacteria,2TUHP@28211|Alphaproteobacteria,3JRVY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_35605	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_6299245_9	1230476.C207_06047	3.491e-190	595.0	COG2030@1|root,COG2030@2|Bacteria,1MUR2@1224|Proteobacteria,2TUM7@28211|Alphaproteobacteria,3JU8Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	N-terminal half of MaoC dehydratase	MA20_35600	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydrat_N,MaoC_dehydratas
SX3_k127_6299245_20	1297865.APJD01000002_gene4154	1.298e-82	280.0	COG1545@1|root,COG1545@2|Bacteria,1RB09@1224|Proteobacteria,2U5BV@28211|Alphaproteobacteria,3JY0M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DUF35 OB-fold domain, acyl-CoA-associated	MA20_35595	-	-	ko:K07068	-	-	-	-	ko00000	-	-	-	DUF35_N,OB_aCoA_assoc
SX3_k127_6299245_7	1297865.APJD01000002_gene4153	1.464e-260	804.0	COG0183@1|root,COG0183@2|Bacteria,1MUZV@1224|Proteobacteria,2TRHF@28211|Alphaproteobacteria,3JVIV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation	MA20_35590	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	-
SX3_k127_6299245_0	1297865.APJD01000002_gene4152	0.0	2361.0	COG1014@1|root,COG4231@1|root,COG1014@2|Bacteria,COG4231@2|Bacteria,1MUKS@1224|Proteobacteria,2TSHH@28211|Alphaproteobacteria,3JSRZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Pyruvate ferredoxin/flavodoxin oxidoreductase	MA20_35585	-	1.2.7.8	ko:K04090	-	-	-	-	br01601,ko00000,ko01000	-	-	-	POR,TPP_enzyme_C
SX3_k127_6299245_6	1297865.APJD01000002_gene4151	4.247e-264	817.0	COG2010@1|root,COG2010@2|Bacteria,1MV6D@1224|Proteobacteria,2TT9U@28211|Alphaproteobacteria,3JR14@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C
SX3_k127_6299245_17	1297865.APJD01000002_gene4150	2.007e-130	419.0	COG2860@1|root,COG2860@2|Bacteria,1R9H8@1224|Proteobacteria,2VG96@28211|Alphaproteobacteria,3JSN8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	UPF0126 domain	-	-	-	-	-	-	-	-	-	-	-	-	UPF0126
SX3_k127_6299245_19	1297865.APJD01000002_gene4149	3.796e-83	276.0	2A7BM@1|root,30W8D@2|Bacteria,1RD93@1224|Proteobacteria,2U8R5@28211|Alphaproteobacteria,3JYY4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6299245_11	1297865.APJD01000002_gene4148	6.194e-183	573.0	COG2513@1|root,COG2513@2|Bacteria,1R3SD@1224|Proteobacteria,2TRRV@28211|Alphaproteobacteria,3JSI4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Phosphoenolpyruvate phosphomutase	MA20_35565	-	4.1.3.30	ko:K03417	ko00640,map00640	-	R00409	RC00286,RC00287	ko00000,ko00001,ko01000	-	-	-	PEP_mutase
SX3_k127_6299245_23	1297865.APJD01000002_gene4147	6.185e-68	234.0	COG2329@1|root,COG2329@2|Bacteria,1RGVV@1224|Proteobacteria,2U9A3@28211|Alphaproteobacteria,3JZ5R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antibiotic biosynthesis monooxygenase	MA20_35560	-	-	-	-	-	-	-	-	-	-	-	ABM
SX3_k127_6299245_24	1297865.APJD01000002_gene4146	2.454e-61	213.0	COG5470@1|root,COG5470@2|Bacteria,1RIH6@1224|Proteobacteria,2U9VZ@28211|Alphaproteobacteria,3JZIU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NIPSNAP	MA20_35555	-	-	-	-	-	-	-	-	-	-	-	NIPSNAP
SX3_k127_6299245_13	1297865.APJD01000002_gene4145	1.474e-146	468.0	COG0640@1|root,COG0640@2|Bacteria,1MWCW@1224|Proteobacteria,2TTA5@28211|Alphaproteobacteria,3JRUF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	ydfF	GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010035,GO:0010038,GO:0010288,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032791,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046870,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097063,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	-	-	-	-	-	-	-	-	-	HTH_20
SX3_k127_6299245_30	1230476.C207_06058	1.016e-45	168.0	2AQIN@1|root,31FRE@2|Bacteria,1N1Y3@1224|Proteobacteria,2UCJH@28211|Alphaproteobacteria,3K06F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	PXPV
SX3_k127_6299245_28	1297865.APJD01000002_gene4143	1.501e-48	174.0	2AQIN@1|root,346ZZ@2|Bacteria,1NHVY@1224|Proteobacteria,2UK72@28211|Alphaproteobacteria,3K24G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6299245_26	1297865.APJD01000002_gene4142	2.526e-52	187.0	2A9DC@1|root,30YII@2|Bacteria,1RIT3@1224|Proteobacteria,2UADS@28211|Alphaproteobacteria,3JZGF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6299245_22	1297865.APJD01000002_gene4141	7.776e-72	243.0	2CGAW@1|root,344FT@2|Bacteria,1RGC6@1224|Proteobacteria,2U873@28211|Alphaproteobacteria,3JZ52@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_6299245_27	1297865.APJD01000002_gene4140	2.008e-50	181.0	2AACJ@1|root,30ZND@2|Bacteria,1RM1V@1224|Proteobacteria,2UAU3@28211|Alphaproteobacteria,3K002@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	BA14K-like protein	-	-	-	-	-	-	-	-	-	-	-	-	BA14K
SX3_k127_6299245_25	1297865.APJD01000002_gene4139	4.376e-58	203.0	2CIJJ@1|root,33GFX@2|Bacteria,1RJ9J@1224|Proteobacteria,2U9V7@28211|Alphaproteobacteria,3JZNN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6299245_2	1297865.APJD01000002_gene4138	0.0	1020.0	COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2TRI1@28211|Alphaproteobacteria,3JTM9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Carboxyl transferase domain	pccB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016421,GO:0016874,GO:0016885,GO:0019752,GO:0031974,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0070013,GO:0071704,GO:0072329,GO:1901575	2.1.3.15,6.4.1.3	ko:K01966	ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200	M00373,M00741	R01859	RC00097,RC00609	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
SX3_k127_6299245_21	1297865.APJD01000002_gene4137	1.525e-81	272.0	2CWCM@1|root,32SZF@2|Bacteria,1N037@1224|Proteobacteria,2UCWU@28211|Alphaproteobacteria,3JYW3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4260)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4260
SX3_k127_6299245_16	1297865.APJD01000002_gene4136	5.246e-134	429.0	2DGR7@1|root,2ZWZY@2|Bacteria,1P6GC@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6299245_8	1297865.APJD01000002_gene4135	3.491e-193	608.0	COG0697@1|root,COG0697@2|Bacteria,1MVHN@1224|Proteobacteria,2TRCU@28211|Alphaproteobacteria,3JVKC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	ydeK	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_6299245_4	1297865.APJD01000002_gene4134	4.546e-291	896.0	COG1167@1|root,COG1167@2|Bacteria,1MV6F@1224|Proteobacteria,2TQP9@28211|Alphaproteobacteria,3JTK0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Alanine-glyoxylate amino-transferase	norG	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2,GntR
SX3_k127_6299245_31	652103.Rpdx1_3726	0.0001243	51.0	COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,2TRUB@28211|Alphaproteobacteria,3JUU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	dnaE2	GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496	2.7.7.7	ko:K02337,ko:K14162	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	M00260	R00375,R00376,R00377,R00378	RC02795	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	-	-	-	DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
SX3_k127_6299245_15	1297865.APJD01000002_gene4133	7.763e-137	436.0	COG2128@1|root,COG2128@2|Bacteria,1NC6E@1224|Proteobacteria,2U042@28211|Alphaproteobacteria,3JVRC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	-	-	4.1.1.44	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	-	R03470	RC00938	ko00000,ko00001,ko01000	-	-	-	-
SX3_k127_6299245_10	1297865.APJD01000002_gene4132	4.07e-185	584.0	COG2602@1|root,COG2602@2|Bacteria,1NWXE@1224|Proteobacteria,2TTNH@28211|Alphaproteobacteria,3JU3M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Penicillin binding protein transpeptidase domain	bla	-	3.5.2.6	ko:K17838	ko01501,map01501	-	R06363	RC01499	ko00000,ko00001,ko01000	-	-	-	Transpeptidase
SX3_k127_6299245_29	1297865.APJD01000002_gene4131	9.363e-47	173.0	COG2257@1|root,COG2257@2|Bacteria,1N7F1@1224|Proteobacteria,2UBW8@28211|Alphaproteobacteria,3K0H3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FlhB HrpN YscU SpaS Family	MA20_35465	-	-	ko:K04061	-	-	-	-	ko00000,ko02044	-	-	-	Bac_export_2
SX3_k127_6299245_3	1297865.APJD01000002_gene4130	9.339e-318	976.0	COG3144@1|root,COG3144@2|Bacteria,1MV22@1224|Proteobacteria,2TRBM@28211|Alphaproteobacteria,3JSGN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellar hook-length control protein FliK	-	-	-	-	-	-	-	-	-	-	-	-	Flg_hook
SX3_k127_6299245_12	1297865.APJD01000002_gene4129	1.462e-167	530.0	COG5387@1|root,COG5387@2|Bacteria,1Q3B5@1224|Proteobacteria,2TVK1@28211|Alphaproteobacteria,3JSG6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATP12 chaperone protein	-	-	-	-	-	-	-	-	-	-	-	-	ATP12
SX3_k127_6299245_18	1297865.APJD01000002_gene4128	2.01e-84	284.0	2DR2Z@1|root,339YC@2|Bacteria,1RA0M@1224|Proteobacteria,2U5KN@28211|Alphaproteobacteria,3JY55@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6299245_1	1297865.APJD01000002_gene4127	0.0	1206.0	COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,2U19S@28211|Alphaproteobacteria,3JZAN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Multicopper oxidase	-	-	-	-	-	-	-	-	-	-	-	-	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
SX3_k127_6299245_5	1297865.APJD01000002_gene4126	2.569e-290	896.0	COG3511@1|root,COG3511@2|Bacteria,1MVNS@1224|Proteobacteria,2U1QU@28211|Alphaproteobacteria,3JW8V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Phosphoesterase family	-	-	-	-	-	-	-	-	-	-	-	-	Phosphoesterase
SX3_k127_631418_4	1297865.APJD01000026_gene2539	6.016e-36	136.0	COG0406@1|root,COG0406@2|Bacteria	2|Bacteria	G	alpha-ribazole phosphatase activity	gpm	-	5.4.2.12	ko:K15634	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000	-	-	-	His_Phos_1
SX3_k127_631418_5	323097.Nham_3476	2.311e-05	52.0	COG5567@1|root,COG5567@2|Bacteria,1NEKY@1224|Proteobacteria,2UHV1@28211|Alphaproteobacteria,3K148@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Prokaryotic lipoprotein-attachment site	-	-	-	-	-	-	-	-	-	-	-	-	LPAM_2
SX3_k127_631418_2	1297865.APJD01000026_gene2540	2.923e-235	727.0	28JIQ@1|root,2Z9BX@2|Bacteria,1RD6T@1224|Proteobacteria,2U9G1@28211|Alphaproteobacteria,3K46E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_631418_0	1297865.APJD01000026_gene2541	1.363e-266	829.0	COG2271@1|root,COG2271@2|Bacteria,1MUEK@1224|Proteobacteria,2U277@28211|Alphaproteobacteria,3K2IP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_631418_1	1297865.APJD01000026_gene2542	1.342e-237	738.0	COG3178@1|root,COG3178@2|Bacteria,1QYS1@1224|Proteobacteria,2TXY8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1679)	-	-	-	-	-	-	-	-	-	-	-	-	EcKinase
SX3_k127_631418_3	1297865.APJD01000026_gene2543	3.009e-163	516.0	COG0583@1|root,COG0583@2|Bacteria	2|Bacteria	K	DNA-binding transcription factor activity	-	-	-	ko:K21757	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_6318182_8	1297865.APJD01000010_gene4944	4.485e-33	127.0	COG0557@1|root,COG0557@2|Bacteria,1MUS6@1224|Proteobacteria,2TRC1@28211|Alphaproteobacteria,3JRHJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs	rnr	GO:0000175,GO:0003674,GO:0003724,GO:0003824,GO:0004386,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008408,GO:0008997,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016896,GO:0017111,GO:0019222,GO:0019439,GO:0034458,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575	-	ko:K12573	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03016,ko03019	-	-	-	RNB,S1
SX3_k127_6318182_0	1297865.APJD01000010_gene4945	0.0	1801.0	COG0550@1|root,COG1754@1|root,COG0550@2|Bacteria,COG1754@2|Bacteria,1MUFZ@1224|Proteobacteria,2TRGN@28211|Alphaproteobacteria,3JSU4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone	topA	-	5.99.1.2	ko:K03168	-	-	-	-	ko00000,ko01000,ko03032,ko03400	-	-	-	Topoisom_bac,Toprim,Toprim_C_rpt,zf-C4_Topoisom
SX3_k127_6318182_6	1297865.APJD01000010_gene4947	3.167e-89	295.0	COG1733@1|root,COG1733@2|Bacteria,1RIZT@1224|Proteobacteria,2U7SS@28211|Alphaproteobacteria,3JS0E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_6318182_4	1297865.APJD01000010_gene4948	3.658e-158	500.0	COG1028@1|root,COG1028@2|Bacteria,1MXNY@1224|Proteobacteria,2U126@28211|Alphaproteobacteria,3JQUN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	MA20_36375	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_6318182_9	1230476.C207_04183	1.992e-15	79.0	2CEIK@1|root,3023X@2|Bacteria,1NB6U@1224|Proteobacteria,2UG57@28211|Alphaproteobacteria,3K1EW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6318182_3	1297865.APJD01000010_gene4950	4.36e-183	574.0	COG0583@1|root,COG0583@2|Bacteria,1NSNV@1224|Proteobacteria,2U010@28211|Alphaproteobacteria,3JU9J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6318182_5	1297865.APJD01000010_gene4951	2.415e-116	375.0	COG1247@1|root,COG1247@2|Bacteria,1RDHN@1224|Proteobacteria,2U98I@28211|Alphaproteobacteria,3JUN3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Acetyltransferase (GNAT) domain	-	-	2.3.1.183	ko:K03823	ko00440,ko01130,map00440,map01130	-	R08871,R08938	RC00004,RC00064	ko00000,ko00001,ko01000	-	-	-	Acetyltransf_4
SX3_k127_6318182_1	1297865.APJD01000010_gene4952	9.006e-242	752.0	COG0477@1|root,COG2814@2|Bacteria,1MUXC@1224|Proteobacteria,2TRR7@28211|Alphaproteobacteria,3JVCK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_6318182_2	1230476.C207_05766	1.781e-226	704.0	COG0624@1|root,COG0624@2|Bacteria,1MWJS@1224|Proteobacteria,2TUHT@28211|Alphaproteobacteria,3K2FM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M28	-	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_6335600_5	1297865.APJD01000014_gene686	5.151e-19	86.0	COG3485@1|root,COG3485@2|Bacteria,1MX7W@1224|Proteobacteria,2TT8T@28211|Alphaproteobacteria,3JWT1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Catechol dioxygenase N terminus	-	-	1.13.11.1	ko:K03381	ko00361,ko00362,ko00364,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00364,map00623,map01100,map01120,map01220	M00568	R00817,R04258,R05299,R08114,R08115,R09134	RC00388,RC00535,RC01366	ko00000,ko00001,ko00002,ko01000	-	-	-	Dioxygenase_C,Dioxygenase_N
SX3_k127_6335600_0	1297865.APJD01000014_gene687	9.435e-243	751.0	COG4948@1|root,COG4948@2|Bacteria,1MU8R@1224|Proteobacteria,2TSS4@28211|Alphaproteobacteria,3JRRK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain	catB	-	5.5.1.1,5.5.1.7	ko:K01856,ko:K01860	ko00361,ko00362,ko00364,ko00623,ko01100,ko01120,ko01220,map00361,map00362,map00364,map00623,map01100,map01120,map01220	M00568	R04259,R05300,R05390,R05392,R06834,R06840,R06989,R08116,R08119,R09135,R09215,R09217,R09221,R09229	RC00903,RC01038,RC01108,RC01321,RC01356,RC01358,RC01687,RC02117,RC02448,RC02464,RC02465	ko00000,ko00001,ko00002,ko01000	-	-	-	MR_MLE_C,MR_MLE_N
SX3_k127_6335600_3	1297865.APJD01000014_gene688	2.51e-189	592.0	COG0583@1|root,COG0583@2|Bacteria,1MV0Z@1224|Proteobacteria,2VEWX@28211|Alphaproteobacteria,3JV0C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	ko:K21757	-	-	-	-	ko00000,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_6335600_2	1297865.APJD01000014_gene689	1.618e-205	640.0	COG0042@1|root,COG0042@2|Bacteria,1MUY1@1224|Proteobacteria,2TSRR@28211|Alphaproteobacteria,3JQQ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs	dusA	-	-	ko:K05539	-	-	-	-	ko00000,ko01000,ko03016	-	-	-	Dus
SX3_k127_6335600_1	1297865.APJD01000014_gene690	8.059e-224	694.0	COG1878@1|root,COG1878@2|Bacteria,1MVWU@1224|Proteobacteria,2TUQ1@28211|Alphaproteobacteria,3JRVC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative cyclase	MA20_36465	-	-	-	-	-	-	-	-	-	-	-	Cyclase
SX3_k127_6335600_4	1297865.APJD01000014_gene691	1.052e-19	88.0	COG1661@1|root,COG1661@2|Bacteria,1RJC1@1224|Proteobacteria	1224|Proteobacteria	S	DNA-binding protein with PD1-like DNA-binding motif	-	-	-	ko:K06934	-	-	-	-	ko00000	-	-	-	DUF296
SX3_k127_634465_0	1297865.APJD01000007_gene1784	2.352e-306	940.0	COG0065@1|root,COG0065@2|Bacteria,1MVYR@1224|Proteobacteria,2TVD2@28211|Alphaproteobacteria,3JURG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	-	-	4.2.1.33,4.2.1.35	ko:K01703	ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170	RC00497,RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase
SX3_k127_634465_5	1297865.APJD01000007_gene1785	3.644e-137	436.0	COG0066@1|root,COG0066@2|Bacteria,1NZAW@1224|Proteobacteria,2TU8D@28211|Alphaproteobacteria,3JWFU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	-	-	4.2.1.33,4.2.1.35	ko:K01704	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R03896,R03898,R03968,R04001,R10170	RC00976,RC00977,RC01041,RC01046,RC03072	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Aconitase_C
SX3_k127_634465_1	1297865.APJD01000007_gene1786	2.077e-233	724.0	COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,2TQKG@28211|Alphaproteobacteria,3JWJW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CE	Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate	leuB	GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.85	ko:K00052	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R00994,R04426,R10052	RC00084,RC00417,RC03036	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Iso_dh
SX3_k127_634465_2	1297865.APJD01000007_gene1787	4.925e-231	717.0	COG0715@1|root,COG0715@2|Bacteria,1R9SU@1224|Proteobacteria,2U2W9@28211|Alphaproteobacteria,3JSH8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1-like family	-	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1_2
SX3_k127_634465_4	1297865.APJD01000007_gene1788	1.496e-176	556.0	COG1116@1|root,COG1116@2|Bacteria,1N7FP@1224|Proteobacteria,2U19G@28211|Alphaproteobacteria,3JUI5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	-	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_634465_3	1297865.APJD01000007_gene1789	2.025e-183	578.0	COG0600@1|root,COG0600@2|Bacteria,1R4FB@1224|Proteobacteria,2U0KP@28211|Alphaproteobacteria,3JWMY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	-	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_634465_7	1297865.APJD01000007_gene1790	4.139e-31	122.0	2AV1Z@1|root,31KRV@2|Bacteria,1NCCZ@1224|Proteobacteria,2UF6J@28211|Alphaproteobacteria,3K0Z8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_634465_8	113395.AXAI01000008_gene853	0.0001065	48.0	2AES0@1|root,314NT@2|Bacteria,1NAZF@1224|Proteobacteria,2UGMP@28211|Alphaproteobacteria,3K1FH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_634465_6	1297865.APJD01000007_gene1791	6.372e-66	224.0	COG2721@1|root,COG2721@2|Bacteria,1MU9V@1224|Proteobacteria,2U0QN@28211|Alphaproteobacteria,3JUSN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	D-galactarate dehydratase / Altronate hydrolase, C terminus	garD	-	4.2.1.42	ko:K01708	ko00053,map00053	-	R05608	RC00543	ko00000,ko00001,ko01000	-	-	-	GD_AH_C,SAF
SX3_k127_635031_2	1297865.APJD01000026_gene2544	6.312e-259	801.0	COG2334@1|root,COG2334@2|Bacteria,1RBTQ@1224|Proteobacteria,2U6F4@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Ecdysteroid kinase	-	-	-	-	-	-	-	-	-	-	-	-	APH,EcKinase
SX3_k127_635031_5	1297865.APJD01000026_gene2545	1.339e-255	790.0	COG0683@1|root,COG0683@2|Bacteria,1MWR8@1224|Proteobacteria,2UPD5@28211|Alphaproteobacteria,3K2W7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_635031_16	258594.RPA0628	2.238e-06	51.0	COG3409@1|root,COG5480@1|root,COG3409@2|Bacteria,COG5480@2|Bacteria,1P9ZA@1224|Proteobacteria,2TSTF@28211|Alphaproteobacteria,3JVQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF1036)	MA20_21840	-	-	-	-	-	-	-	-	-	-	-	DUF1036,PG_binding_1
SX3_k127_635031_1	1297865.APJD01000026_gene2546	5.417e-264	819.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,3JU55@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	-	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_635031_0	1297865.APJD01000026_gene2547	5.341e-280	861.0	COG1024@1|root,COG1024@2|Bacteria,1R4IY@1224|Proteobacteria,2U2VD@28211|Alphaproteobacteria,3K2ZS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_635031_3	1297865.APJD01000026_gene2548	1.981e-258	801.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3JXB8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.7	ko:K00249	ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320	M00013,M00036,M00087	R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754	RC00052,RC00068,RC00076,RC00095,RC00148,RC00246	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_635031_14	936455.KI421499_gene754	2.067e-149	476.0	COG1028@1|root,COG1028@2|Bacteria,1MU2T@1224|Proteobacteria,2TSDG@28211|Alphaproteobacteria,3JWEE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.100	ko:K00059,ko:K07535	ko00061,ko00333,ko00362,ko00780,ko01040,ko01100,ko01120,ko01130,ko01212,ko01220,map00061,map00333,map00362,map00780,map01040,map01100,map01120,map01130,map01212,map01220	M00083,M00540,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R05582,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117,RC00154	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_635031_12	1297865.APJD01000026_gene2550	9.046e-174	545.0	COG0447@1|root,COG0447@2|Bacteria,1QTZ2@1224|Proteobacteria,2U0ZZ@28211|Alphaproteobacteria,3JWVZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Belongs to the enoyl-CoA hydratase isomerase family. MenB subfamily	menB	-	-	ko:K07536	ko00362,ko01120,ko01220,map00362,map01120,map01220	M00540	R05592	RC01429	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_635031_9	1297865.APJD01000026_gene2551	4.56e-202	631.0	COG3246@1|root,COG3246@2|Bacteria,1MZTP@1224|Proteobacteria,2TQKN@28211|Alphaproteobacteria,3JS9Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	beta-keto acid cleavage enzyme	-	-	-	-	-	-	-	-	-	-	-	-	BKACE
SX3_k127_635031_4	1297865.APJD01000026_gene2552	5.841e-256	792.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TR15@28211|Alphaproteobacteria,3K369@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	1.3.8.8	ko:K00255	ko00071,ko01100,ko01212,ko03320,map00071,map01100,map01212,map03320	M00087	R01279,R03777,R03857,R03990,R04751,R04754	RC00052	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_635031_6	936455.KI421499_gene750	1.304e-252	787.0	COG1960@1|root,COG1960@2|Bacteria,1MVAH@1224|Proteobacteria,2TR02@28211|Alphaproteobacteria,3JVUT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
SX3_k127_635031_11	1297865.APJD01000026_gene2554	5.762e-184	582.0	COG2301@1|root,COG2301@2|Bacteria,1MW0A@1224|Proteobacteria,2TTC0@28211|Alphaproteobacteria,3JXVY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	HpcH/HpaI aldolase/citrate lyase family	-	-	4.1.3.34	ko:K01644	ko02020,map02020	-	R00362	RC00067,RC01118	ko00000,ko00001,ko01000	-	-	-	HpcH_HpaI
SX3_k127_635031_15	1297865.APJD01000026_gene2555	5.354e-94	310.0	COG2030@1|root,COG2030@2|Bacteria,1MW4N@1224|Proteobacteria,2TQQ2@28211|Alphaproteobacteria,3JXUB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	N-terminal half of MaoC dehydratase	-	-	-	-	-	-	-	-	-	-	-	-	MaoC_dehydratas
SX3_k127_635031_8	1297865.APJD01000026_gene2556	3.982e-223	691.0	COG2130@1|root,COG2130@2|Bacteria,1MUC2@1224|Proteobacteria,2TQYM@28211|Alphaproteobacteria,3K2XI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	N-terminal domain of oxidoreductase	-	-	-	ko:K07119	-	-	-	-	ko00000	-	-	-	ADH_N_2,ADH_zinc_N
SX3_k127_635031_10	1297865.APJD01000026_gene2557	4.678e-191	596.0	COG1028@1|root,COG1028@2|Bacteria,1PFUB@1224|Proteobacteria,2U149@28211|Alphaproteobacteria,3JUGF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_635031_13	1297865.APJD01000026_gene2558	1.462e-164	526.0	COG1024@1|root,COG1024@2|Bacteria,1MXHV@1224|Proteobacteria,2TTEG@28211|Alphaproteobacteria,3K3I5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_635031_7	1297865.APJD01000026_gene2559	2.622e-230	713.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JWY5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme	-	-	-	ko:K04116	ko00362,ko01120,map00362,map01120	M00540	R05620	RC00004,RC01438	ko00000,ko00001,ko00002,ko01000	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_6363040_17	1297865.APJD01000010_gene5031	2.71e-32	125.0	2DNE6@1|root,32X2K@2|Bacteria,1MYAI@1224|Proteobacteria,2UDH9@28211|Alphaproteobacteria,3K0SY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6363040_0	1297865.APJD01000010_gene5030	6.044e-313	960.0	COG1066@1|root,COG1066@2|Bacteria,1MUJQ@1224|Proteobacteria,2TS6F@28211|Alphaproteobacteria,3JR45@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function	radA	-	-	ko:K04485	-	-	-	-	ko00000,ko03400	-	-	-	AAA_25,ATPase,ChlI
SX3_k127_6363040_11	398525.KB900701_gene4500	9.9e-124	398.0	COG1286@1|root,COG1286@2|Bacteria,1NF4G@1224|Proteobacteria,2TUVR@28211|Alphaproteobacteria,3JQX3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Colicin V production protein	cvpA	-	-	ko:K03558	-	-	-	-	ko00000	-	-	-	Colicin_V
SX3_k127_6363040_6	1297865.APJD01000010_gene5028	9.272e-234	724.0	COG0034@1|root,COG0034@2|Bacteria,1MU0V@1224|Proteobacteria,2TR8V@28211|Alphaproteobacteria,3JUSU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine	purF	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464	2.4.2.14	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048	R01072	RC00010,RC02724,RC02752	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase_6,GATase_7,Pribosyltran
SX3_k127_6363040_13	1297865.APJD01000010_gene5028	2.422e-101	330.0	COG0034@1|root,COG0034@2|Bacteria,1MU0V@1224|Proteobacteria,2TR8V@28211|Alphaproteobacteria,3JUSU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine	purF	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464	2.4.2.14	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	M00048	R01072	RC00010,RC02724,RC02752	ko00000,ko00001,ko00002,ko01000,ko01002	-	-	-	GATase_6,GATase_7,Pribosyltran
SX3_k127_6363040_7	1230476.C207_05493	4.325e-148	471.0	COG1028@1|root,COG1028@2|Bacteria,1MWBC@1224|Proteobacteria,2TTQS@28211|Alphaproteobacteria,3JT8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Belongs to the short-chain dehydrogenases reductases (SDR) family	MA20_27940	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_6363040_5	1297865.APJD01000010_gene5026	2.563e-247	770.0	COG3391@1|root,COG3391@2|Bacteria,1MXRF@1224|Proteobacteria,2U1E9@28211|Alphaproteobacteria,3JTTY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	amine dehydrogenase activity	-	-	-	-	-	-	-	-	-	-	-	-	NHL
SX3_k127_6363040_3	1297865.APJD01000010_gene5025	4.798e-261	804.0	COG3391@1|root,COG3391@2|Bacteria,1MXRF@1224|Proteobacteria,2U1E9@28211|Alphaproteobacteria,3JTTY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	amine dehydrogenase activity	-	-	-	-	-	-	-	-	-	-	-	-	NHL
SX3_k127_6363040_2	1297865.APJD01000010_gene5024	1.093e-265	818.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3JS24@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	MA20_27930	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_6363040_12	1297865.APJD01000010_gene5023	7.391e-118	380.0	COG4731@1|root,COG4731@2|Bacteria,1R70G@1224|Proteobacteria,2TV3F@28211|Alphaproteobacteria,3JSJT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein conserved in bacteria (DUF2147)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2147
SX3_k127_6363040_8	1297865.APJD01000010_gene5022	1.752e-134	432.0	28PW7@1|root,2ZCGM@2|Bacteria,1R7U8@1224|Proteobacteria,2TSV3@28211|Alphaproteobacteria,3JXAQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3313)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3313
SX3_k127_6363040_10	1297865.APJD01000010_gene5021	7.297e-130	417.0	COG1309@1|root,COG1309@2|Bacteria,1N6TK@1224|Proteobacteria,2TV16@28211|Alphaproteobacteria,3JWHW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_6363040_15	1297865.APJD01000010_gene5020	3.003e-59	205.0	2A0XP@1|root,30P2U@2|Bacteria,1NX4Q@1224|Proteobacteria,2UT3Y@28211|Alphaproteobacteria,3K4KR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6363040_14	1297865.APJD01000010_gene5019	6.848e-82	281.0	COG4319@1|root,COG4319@2|Bacteria,1N99A@1224|Proteobacteria,2U74I@28211|Alphaproteobacteria,3JZ2B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL_3
SX3_k127_6363040_9	1297865.APJD01000010_gene5018	8.654e-134	428.0	COG0625@1|root,COG0625@2|Bacteria,1PA0Q@1224|Proteobacteria,2U1TW@28211|Alphaproteobacteria,3JWF3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, N-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C_2,GST_N,GST_N_3
SX3_k127_6363040_4	1297865.APJD01000010_gene5017	1.084e-258	807.0	COG0477@1|root,COG2814@2|Bacteria,1MVSH@1224|Proteobacteria,2TUEW@28211|Alphaproteobacteria,3JTAS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	MA20_27925	-	-	ko:K08151	-	M00668	-	-	ko00000,ko00002,ko01504,ko02000	2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75	-	-	MFS_1,Sugar_tr
SX3_k127_6363040_1	1297865.APJD01000010_gene5016	3.84e-297	912.0	COG1160@1|root,COG1160@2|Bacteria,1MU9S@1224|Proteobacteria,2TT38@28211|Alphaproteobacteria,3JT1G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	GTPase that plays an essential role in the late steps of ribosome biogenesis	der	-	-	ko:K03977	-	-	-	-	ko00000,ko03009	-	-	-	KH_dom-like,MMR_HSR1
SX3_k127_6363040_16	1297865.APJD01000010_gene5015	3.378e-53	188.0	2CH5S@1|root,2ZUHH@2|Bacteria,1RKQR@1224|Proteobacteria,2TSDT@28211|Alphaproteobacteria,3JTRA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6370400_5	1297865.APJD01000032_gene1628	4.125e-45	167.0	2EIDG@1|root,33C4V@2|Bacteria,1N0P4@1224|Proteobacteria,2UC9K@28211|Alphaproteobacteria,3K073@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6370400_2	1297865.APJD01000032_gene1629	1.122e-197	616.0	COG0583@1|root,COG0583@2|Bacteria,1NTDD@1224|Proteobacteria,2TTVQ@28211|Alphaproteobacteria,3JSI8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	MA20_05295	-	-	ko:K03566	ko02026,map02026	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_1,LysR_substrate
SX3_k127_6370400_0	1297865.APJD01000032_gene1630	2.095e-300	921.0	COG1409@1|root,COG1409@2|Bacteria,1RHP4@1224|Proteobacteria,2U9B6@28211|Alphaproteobacteria,3K0V6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos
SX3_k127_6370400_1	1297865.APJD01000032_gene1631	2.563e-280	861.0	COG2072@1|root,COG2072@2|Bacteria,1MWPJ@1224|Proteobacteria,2TSQA@28211|Alphaproteobacteria,3JT1R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Pyridine nucleotide-disulphide oxidoreductase	-	-	-	ko:K07222	-	-	-	-	ko00000	-	-	-	Pyr_redox_3
SX3_k127_6370400_7	1297865.APJD01000032_gene1632	7.259e-38	142.0	2ACSU@1|root,312DP@2|Bacteria,1N3G2@1224|Proteobacteria,2UDXK@28211|Alphaproteobacteria,3K06D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_05300	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6370400_6	1297865.APJD01000032_gene1633	1.051e-39	151.0	2ADD4@1|root,3132V@2|Bacteria,1N5CC@1224|Proteobacteria,2UDAK@28211|Alphaproteobacteria,3K0E5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6370400_4	1297865.APJD01000032_gene1634	3.906e-47	170.0	2BRXR@1|root,32KY0@2|Bacteria,1NM45@1224|Proteobacteria,2UNH8@28211|Alphaproteobacteria,3K1ZB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6370400_3	1297865.APJD01000032_gene1635	5.186e-125	403.0	COG0556@1|root,COG0556@2|Bacteria,1MUFK@1224|Proteobacteria,2TQSP@28211|Alphaproteobacteria,3JR4I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage	uvrB	-	-	ko:K03702	ko03420,map03420	-	-	-	ko00000,ko00001,ko03400	-	-	-	Helicase_C,ResIII,UVR,UvrB
SX3_k127_6371634_1	1297865.APJD01000010_gene4912	3.489e-225	698.0	COG5485@1|root,COG5485@2|Bacteria,1MXSP@1224|Proteobacteria,2TVPC@28211|Alphaproteobacteria,3JRUM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haem-containing dehydratase	-	-	4.99.1.5	ko:K13028	-	-	R02827	RC00791	ko00000,ko01000	-	-	-	Dehydratase_hem
SX3_k127_6371634_0	1297865.APJD01000010_gene4911	4.251e-228	707.0	COG0388@1|root,COG0388@2|Bacteria,1MWQG@1224|Proteobacteria,2TYHX@28211|Alphaproteobacteria,3JTNQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carbon-nitrogen hydrolase	MA20_36155	-	3.5.5.7	ko:K01502	ko00643,ko01120,map00643,map01120	-	R05358	RC01336	ko00000,ko00001,ko01000	-	-	-	CN_hydrolase
SX3_k127_6371634_2	1297865.APJD01000010_gene4910	1.48e-118	381.0	COG2207@1|root,COG2207@2|Bacteria,1MXT9@1224|Proteobacteria,2U0UP@28211|Alphaproteobacteria,3JRK9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AraC-binding-like domain	MA20_36150	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_6376849_3	1297865.APJD01000005_gene3902	2.155e-156	493.0	COG0483@1|root,COG0483@2|Bacteria,1NFR1@1224|Proteobacteria,2U1X2@28211|Alphaproteobacteria,3JSHH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Inositol monophosphatase family	-	-	3.1.3.25	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	M00131	R01185,R01186,R01187	RC00078	ko00000,ko00001,ko00002,ko01000	-	-	-	Inositol_P
SX3_k127_6376849_2	1297865.APJD01000005_gene3903	6.669e-259	807.0	2CIPC@1|root,2Z9HB@2|Bacteria,1R3W8@1224|Proteobacteria,2TST7@28211|Alphaproteobacteria,3JTHB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyltransferase family 87	-	-	-	-	-	-	-	-	-	-	-	-	GT87
SX3_k127_6376849_4	1297865.APJD01000005_gene3904	1.795e-149	474.0	COG4221@1|root,COG4221@2|Bacteria,1PWXN@1224|Proteobacteria,2U2SU@28211|Alphaproteobacteria,3JTFM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4336)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4336
SX3_k127_6376849_1	1297865.APJD01000005_gene3905	1.835e-263	812.0	COG0683@1|root,COG0683@2|Bacteria,1MV1Z@1224|Proteobacteria,2UQ30@28211|Alphaproteobacteria,3K3MT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_6376849_0	1297865.APJD01000005_gene3906	0.0	1124.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TRG4@28211|Alphaproteobacteria,3K3DH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	-	-	-	-	-	-	-	-	-	-	-	-	FMO-like,Pyr_redox_3
SX3_k127_6376849_5	1297865.APJD01000005_gene3907	1.262e-90	298.0	COG1917@1|root,COG1917@2|Bacteria,1RH1V@1224|Proteobacteria,2U990@28211|Alphaproteobacteria,3K3PA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	AraC-like ligand binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2
SX3_k127_6376849_6	1297865.APJD01000005_gene3908	4.648e-25	104.0	COG1609@1|root,COG1609@2|Bacteria,1MVUR@1224|Proteobacteria,2U0YB@28211|Alphaproteobacteria,3JRNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn _helix lactose operon repressor	-	-	-	ko:K02529	-	-	-	-	ko00000,ko03000	-	-	-	LacI,Peripla_BP_3
SX3_k127_6383499_7	1297865.APJD01000014_gene761	7.213e-150	475.0	COG1470@1|root,COG1470@2|Bacteria,1Q2PZ@1224|Proteobacteria,2UIWU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	PA14,VPEP
SX3_k127_6383499_20	1297865.APJD01000014_gene762	5.989e-31	126.0	2AE09@1|root,301G4@2|Bacteria,1N7RU@1224|Proteobacteria,2UFHZ@28211|Alphaproteobacteria,3K187@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_21	1297865.APJD01000014_gene763	5.574e-30	119.0	2CG5P@1|root,302N0@2|Bacteria,1NDN3@1224|Proteobacteria,2UHZN@28211|Alphaproteobacteria,3K17R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_19	1297865.APJD01000014_gene764	6.528e-35	138.0	2AKSQ@1|root,31BJR@2|Bacteria,1N9Q1@1224|Proteobacteria,2UGJE@28211|Alphaproteobacteria,3K1M3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_14	172088.AUGA01000009_gene1683	6.109e-67	233.0	2A9PW@1|root,30YWT@2|Bacteria,1RJKF@1224|Proteobacteria,2U9Q9@28211|Alphaproteobacteria,3JZTC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_4	1297865.APJD01000014_gene766	1.998e-192	604.0	COG0596@1|root,COG0596@2|Bacteria,1NUT9@1224|Proteobacteria,2TVMS@28211|Alphaproteobacteria,3JUAG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative esterase	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1
SX3_k127_6383499_13	1297865.APJD01000014_gene767	3.292e-75	254.0	COG3255@1|root,COG3255@2|Bacteria,1RG3A@1224|Proteobacteria,2U8E5@28211|Alphaproteobacteria,3JYTW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Sterol carrier protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_16	1297865.APJD01000014_gene769	2.872e-46	169.0	2BT8U@1|root,32NE7@2|Bacteria,1N1J9@1224|Proteobacteria,2UCQH@28211|Alphaproteobacteria,3K01D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_18	1230476.C207_01745	5.255e-37	141.0	2AERF@1|root,314N3@2|Bacteria,1NAUR@1224|Proteobacteria,2UGZ9@28211|Alphaproteobacteria,3K0XH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_31415	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_5	1297865.APJD01000014_gene771	9.532e-162	509.0	COG3637@1|root,COG3637@2|Bacteria,1R4WV@1224|Proteobacteria,2U0V2@28211|Alphaproteobacteria,3JTEK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	OmpA-like transmembrane domain	MA20_31420	-	-	ko:K16079	-	-	-	-	ko00000,ko02000	1.B.4.2.1	-	-	OMP_b-brl
SX3_k127_6383499_9	1297865.APJD01000014_gene772	1.441e-87	289.0	2A8UK@1|root,30XXU@2|Bacteria,1RHB8@1224|Proteobacteria,2U9EM@28211|Alphaproteobacteria,3JZUA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_11	1297865.APJD01000014_gene773	2.695e-83	279.0	COG1846@1|root,COG1846@2|Bacteria,1RE7A@1224|Proteobacteria,2U9HU@28211|Alphaproteobacteria,3JZW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_6383499_1	1297865.APJD01000014_gene774	0.0	1020.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2TQT8@28211|Alphaproteobacteria,3JTRW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	1.14.13.127	ko:K05712	ko00360,ko01120,ko01220,map00360,map01120,map01220	M00545	R06786,R06787	RC00236	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_6383499_15	172088.AUGA01000009_gene1675	7.034e-58	204.0	2A7JV@1|root,30WHR@2|Bacteria,1RE3D@1224|Proteobacteria,2UBF5@28211|Alphaproteobacteria,3K5W7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_8	1297865.APJD01000014_gene776	8.506e-111	362.0	COG0457@1|root,COG0457@2|Bacteria,1R6YX@1224|Proteobacteria,2U4TP@28211|Alphaproteobacteria,3JRSA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	MA20_31435	-	-	-	-	-	-	-	-	-	-	-	TPR_16,TPR_2
SX3_k127_6383499_6	1297865.APJD01000014_gene777	6.644e-160	511.0	COG2084@1|root,COG2084@2|Bacteria,1MX8V@1224|Proteobacteria,2TVBS@28211|Alphaproteobacteria,3JUVX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Domain of unknown function (DUF1932)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1932,NAD_binding_2
SX3_k127_6383499_3	1297865.APJD01000014_gene778	1.831e-249	772.0	COG0477@1|root,COG2814@2|Bacteria,1R3UT@1224|Proteobacteria,2TR7Z@28211|Alphaproteobacteria,3JU5V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_6383499_17	1297865.APJD01000014_gene779	1.03e-40	156.0	29F4H@1|root,30228@2|Bacteria,1NAWY@1224|Proteobacteria,2UHQM@28211|Alphaproteobacteria,3K0Z1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_0	1297865.APJD01000014_gene780	0.0	2054.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K07787	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4	-	-	ACR_tran
SX3_k127_6383499_2	1297865.APJD01000014_gene781	6.568e-287	884.0	COG0845@1|root,COG0845@2|Bacteria,1MVAS@1224|Proteobacteria,2TTGG@28211|Alphaproteobacteria,3JTB0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	cusB	-	-	ko:K07798	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.6.1.4,8.A.1	-	-	CusF_Ec,HlyD_D23,HlyD_D4
SX3_k127_6383499_12	1297865.APJD01000014_gene782	5.509e-77	259.0	COG0845@1|root,COG0845@2|Bacteria,1RD9V@1224|Proteobacteria,2U7AW@28211|Alphaproteobacteria,3JYZ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	YtkA-like	-	-	-	-	-	-	-	-	-	-	-	-	YtkA
SX3_k127_6383499_10	1297865.APJD01000014_gene783	1.275e-83	278.0	2A0KD@1|root,30NQK@2|Bacteria,1RGRE@1224|Proteobacteria,2U8FT@28211|Alphaproteobacteria,3JZ70@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6383499_22	1297865.APJD01000014_gene789	4.062e-16	80.0	COG0741@1|root,COG0741@2|Bacteria,1MUMA@1224|Proteobacteria,2TSA5@28211|Alphaproteobacteria,3JQZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	transglycosylase	-	-	-	-	-	-	-	-	-	-	-	-	SLT
SX3_k127_6396366_0	1297865.APJD01000009_gene2945	0.0	2326.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JVPA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GAF_2,GGDEF
SX3_k127_6396366_12	316056.RPC_4037	7.02e-22	99.0	2B0ZA@1|root,31TCG@2|Bacteria,1REQ6@1224|Proteobacteria,2U9NG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6396366_10	1297865.APJD01000009_gene2943	1.805e-103	344.0	COG1917@1|root,COG1917@2|Bacteria,1QEE2@1224|Proteobacteria,2UDNV@28211|Alphaproteobacteria,3JY9N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cupin 2, conserved barrel domain protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF4437
SX3_k127_6396366_9	1230476.C207_06437	4.116e-122	396.0	COG2755@1|root,COG2755@2|Bacteria,1MWT8@1224|Proteobacteria,2TTXF@28211|Alphaproteobacteria,3JRB1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Domain of Unknown Function (DUF1080)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1080
SX3_k127_6396366_2	1297865.APJD01000009_gene2941	4.64e-302	950.0	2C6I7@1|root,2ZAJE@2|Bacteria,1N55E@1224|Proteobacteria,2TU9Z@28211|Alphaproteobacteria,3JV93@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6396366_4	1297865.APJD01000009_gene2940	8.832e-245	761.0	COG2730@1|root,COG2730@2|Bacteria,1N2XP@1224|Proteobacteria,2U7H3@28211|Alphaproteobacteria,3JVIB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Cellulase (glycosyl hydrolase family 5)	-	-	3.2.1.4	ko:K01179	ko00500,ko01100,map00500,map01100	-	R06200,R11307,R11308	-	ko00000,ko00001,ko01000	-	GH5,GH9	-	Cellulase
SX3_k127_6396366_1	1297865.APJD01000009_gene2939	0.0	1448.0	COG1192@1|root,COG3206@1|root,COG1192@2|Bacteria,COG3206@2|Bacteria,1R5R1@1224|Proteobacteria,2U0R4@28211|Alphaproteobacteria,3JSHS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	DM	Chain length determinant protein	-	-	-	-	-	-	-	-	-	-	-	-	GNVR,Wzz
SX3_k127_6396366_8	1297865.APJD01000009_gene2938	3.779e-164	519.0	COG0726@1|root,COG0726@2|Bacteria,1R881@1224|Proteobacteria,2U1Y9@28211|Alphaproteobacteria,3JRCN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Polysaccharide deacetylase	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_6396366_7	1297865.APJD01000009_gene2937	4.091e-176	556.0	COG2227@1|root,COG2227@2|Bacteria,1R5ZG@1224|Proteobacteria,2TZ3A@28211|Alphaproteobacteria,3JVYA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Methyltransferase domain	MA20_06080	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_12,Methyltransf_23
SX3_k127_6396366_3	1297865.APJD01000009_gene2936	2.431e-284	878.0	COG2244@1|root,COG2244@2|Bacteria,1R5ZA@1224|Proteobacteria,2TRJ5@28211|Alphaproteobacteria,3JT14@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polysaccharide biosynthesis protein	MA20_09900	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt,Polysacc_synt_3,Polysacc_synt_C
SX3_k127_6396366_11	107636.JQNK01000010_gene678	2.82e-84	289.0	28JFQ@1|root,2Z99M@2|Bacteria,1R9EI@1224|Proteobacteria,2U28H@28211|Alphaproteobacteria,370U9@31993|Methylocystaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6396366_6	1297865.APJD01000009_gene2934	1.326e-222	691.0	COG4124@1|root,COG4124@2|Bacteria,1N5GF@1224|Proteobacteria,2VF3J@28211|Alphaproteobacteria,3JXTS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the glycosyl hydrolase 26 family	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_hydro_26
SX3_k127_6396366_5	1297865.APJD01000009_gene2933	2.707e-242	751.0	COG0535@1|root,COG0535@2|Bacteria,1PYDY@1224|Proteobacteria,2U1D3@28211|Alphaproteobacteria,3JSX2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Iron-sulfur cluster-binding domain	-	-	-	-	-	-	-	-	-	-	-	-	Fer4_14,Radical_SAM,SPASM
SX3_k127_642253_1	1297865.APJD01000023_gene1183	1.738e-206	644.0	2AEHZ@1|root,314DC@2|Bacteria,1N9XB@1224|Proteobacteria,2UGEZ@28211|Alphaproteobacteria,3K1J1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	VPEP
SX3_k127_642253_0	1297865.APJD01000023_gene1182	0.0	1251.0	COG0457@1|root,COG0457@2|Bacteria,1QQUW@1224|Proteobacteria,2U4RF@28211|Alphaproteobacteria,3JWTZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacteriophage N adsorption protein A C-term	-	-	-	-	-	-	-	-	-	-	-	-	NfrA_C,TPR_16,TPR_19,TPR_8
SX3_k127_6435962_1	1230476.C207_05844	5.797e-150	477.0	COG1329@1|root,COG1329@2|Bacteria,1MWI2@1224|Proteobacteria,2TTVP@28211|Alphaproteobacteria,3JR9K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	CarD-like/TRCF domain	carD	-	-	ko:K07736	-	-	-	-	ko00000,ko03000	-	-	-	CarD_CdnL_TRCF
SX3_k127_6435962_3	1297865.APJD01000015_gene3422	4.288e-132	423.0	COG1280@1|root,COG1280@2|Bacteria,1RD4I@1224|Proteobacteria,2U25W@28211|Alphaproteobacteria,3K40Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	LysE type translocator	-	-	-	-	-	-	-	-	-	-	-	-	LysE
SX3_k127_6435962_2	189753.AXAS01000024_gene524	2.45e-138	452.0	COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,2TS7I@28211|Alphaproteobacteria,3JSNX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	MA20_29105	-	-	-	-	-	-	-	-	-	-	-	DJ-1_PfpI,HTH_18
SX3_k127_6435962_0	1297865.APJD01000015_gene3424	1.49e-308	950.0	COG3391@1|root,COG3391@2|Bacteria,1MVXR@1224|Proteobacteria,2TTRF@28211|Alphaproteobacteria,3JT4X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	TIGRFAM 40-residue YVTN family beta-propeller repeat protein	-	-	-	-	-	-	-	-	-	-	-	-	Lactonase
SX3_k127_6435962_4	1297865.APJD01000015_gene3425	8.763e-96	317.0	COG3544@1|root,COG3544@2|Bacteria,1N0KY@1224|Proteobacteria,2UC2H@28211|Alphaproteobacteria,3K0F7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF305)	-	-	-	-	-	-	-	-	-	-	-	-	DUF305
SX3_k127_6437004_0	1297865.APJD01000009_gene2713	0.0	1333.0	COG1450@1|root,COG1450@2|Bacteria,1MUUA@1224|Proteobacteria,2TT8A@28211|Alphaproteobacteria,3JUPJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Bacterial type II/III secretion system short domain	-	-	-	ko:K02453	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	Secretin,Secretin_N
SX3_k127_6437004_3	1297865.APJD01000009_gene2712	2.954e-83	277.0	29RQE@1|root,30CTU@2|Bacteria,1NJ1C@1224|Proteobacteria,2UKA5@28211|Alphaproteobacteria,3K1QV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6437004_2	1297865.APJD01000009_gene2711	2.026e-186	585.0	COG3156@1|root,COG3156@2|Bacteria,1RE7R@1224|Proteobacteria,2U72M@28211|Alphaproteobacteria,3JYYI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Type II secretion system (T2SS), protein K	-	-	-	-	-	-	-	-	-	-	-	-	T2SSK
SX3_k127_6437004_1	1297865.APJD01000009_gene2710	1.406e-278	858.0	COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,2TRMU@28211|Alphaproteobacteria,3JWI2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Type II secretion system (T2SS), protein E, N-terminal domain	gspE	-	-	ko:K02454	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSE,T2SSE_N
SX3_k127_6440733_5	1297865.APJD01000007_gene2080	1.13e-164	519.0	COG0251@1|root,COG0251@2|Bacteria,1N1B6@1224|Proteobacteria,2TZWE@28211|Alphaproteobacteria,3JRZG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	oxidation-reduction process	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6440733_0	1297865.APJD01000007_gene2081	0.0	1065.0	COG1231@1|root,COG1231@2|Bacteria,1MWPH@1224|Proteobacteria,2U05G@28211|Alphaproteobacteria,3JW1P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Flavin containing amine oxidoreductase	-	-	1.4.3.4	ko:K00274	ko00260,ko00330,ko00340,ko00350,ko00360,ko00380,ko00950,ko00982,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00260,map00330,map00340,map00350,map00360,map00380,map00950,map00982,map01100,map01110,map04726,map04728,map05030,map05031,map05034	M00135	R02173,R02382,R02529,R02532,R02613,R02908,R02919,R04025,R04300,R04674,R04890,R04893,R04894,R04907,R04908,R08346,R08347,R08348,R11354	RC00062,RC00160,RC00225,RC00676,RC00807,RC00808,RC01808,RC02226,RC02713	ko00000,ko00001,ko00002,ko01000	-	-	-	Amino_oxidase
SX3_k127_6440733_10	1297865.APJD01000007_gene2082	1.343e-77	263.0	COG2010@1|root,COG2010@2|Bacteria,1N8E1@1224|Proteobacteria,2UG6N@28211|Alphaproteobacteria,3JZCS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrome_CBB3
SX3_k127_6440733_1	1297865.APJD01000007_gene2083	1.243e-300	934.0	COG0624@1|root,COG0624@2|Bacteria,1MWJS@1224|Proteobacteria,2TUHT@28211|Alphaproteobacteria,3JTSY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Peptidase family M20/M25/M40	-	-	-	-	-	-	-	-	-	-	-	-	M20_dimer,Peptidase_M20,Peptidase_M28
SX3_k127_6440733_7	1297865.APJD01000007_gene2084	1.184e-159	506.0	COG1712@1|root,COG1712@2|Bacteria,1MX8S@1224|Proteobacteria,2TV48@28211|Alphaproteobacteria,3JSWD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate	nadX	-	1.4.1.21	ko:K06989	ko00760,ko01100,map00760,map01100	-	R07407,R07410	RC02566	ko00000,ko00001,ko01000	-	-	-	DUF108,NAD_binding_3
SX3_k127_6440733_9	1297865.APJD01000007_gene2085	2.288e-130	419.0	COG1335@1|root,COG1335@2|Bacteria,1MUGW@1224|Proteobacteria,2TRMB@28211|Alphaproteobacteria,3JSHT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	pncA	-	3.5.1.19	ko:K08281	ko00760,ko01100,map00760,map01100	-	R01268	RC00100	ko00000,ko00001,ko01000	-	-	-	Isochorismatase
SX3_k127_6440733_4	1297865.APJD01000007_gene2086	4.243e-194	607.0	COG0181@1|root,COG0181@2|Bacteria,1MU56@1224|Proteobacteria,2TS3D@28211|Alphaproteobacteria,3JSBV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps	hemC	-	2.5.1.61	ko:K01749	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R00084	RC02317	ko00000,ko00001,ko00002,ko01000	-	-	-	Porphobil_deam,Porphobil_deamC
SX3_k127_6440733_6	1297865.APJD01000007_gene2087	5.039e-160	523.0	COG1024@1|root,COG1024@2|Bacteria,1NDT7@1224|Proteobacteria,2U2R9@28211|Alphaproteobacteria,3JWXD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_6440733_2	1297865.APJD01000007_gene2088	2.804e-247	765.0	COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,2TVNW@28211|Alphaproteobacteria,3JX9Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Ring hydroxylating alpha subunit (catalytic domain)	-	-	-	-	-	-	-	-	-	-	-	-	Rieske,Ring_hydroxyl_A
SX3_k127_6440733_3	1297865.APJD01000007_gene2089	9.969e-197	614.0	COG0583@1|root,COG0583@2|Bacteria,1R7A5@1224|Proteobacteria,2U4VM@28211|Alphaproteobacteria,3JXHJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6440733_8	1297865.APJD01000007_gene2090	2.391e-148	471.0	COG3709@1|root,COG3709@2|Bacteria,1RK3Z@1224|Proteobacteria,2U616@28211|Alphaproteobacteria,3JRP2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Protein of unknown function (DUF1045)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1045
SX3_k127_6440733_11	1297865.APJD01000007_gene2091	5.867e-09	56.0	COG3454@1|root,COG3454@2|Bacteria,1MXDS@1224|Proteobacteria,2TQU0@28211|Alphaproteobacteria,3JS90@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphonate metabolism	MA20_21505	-	3.6.1.63	ko:K06162	ko00440,map00440	-	R10186	RC00002	ko00000,ko00001,ko01000	-	-	-	Amidohydro_1,Amidohydro_3
SX3_k127_6446127_6	1297865.APJD01000005_gene3505	1.034e-254	788.0	COG0329@1|root,COG0329@2|Bacteria,1MV7E@1224|Proteobacteria,2TTT5@28211|Alphaproteobacteria,3JUG4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EM	Protein of unknown function (DUF993)	MA20_16880	-	-	-	-	-	-	-	-	-	-	-	DUF993
SX3_k127_6446127_4	1297865.APJD01000005_gene3504	3.342e-262	809.0	COG0673@1|root,COG0673@2|Bacteria,1PYTN@1224|Proteobacteria,2TS0G@28211|Alphaproteobacteria,3JQM5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase family, NAD-binding Rossmann fold	MA20_16885	-	-	-	-	-	-	-	-	-	-	-	GFO_IDH_MocA,GFO_IDH_MocA_C
SX3_k127_6446127_2	1297865.APJD01000005_gene3503	2.014e-316	968.0	COG4948@1|root,COG4948@2|Bacteria,1MV2S@1224|Proteobacteria,2TTFB@28211|Alphaproteobacteria,3JTFN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Mandelate Racemase Muconate Lactonizing	-	-	-	-	-	-	-	-	-	-	-	-	MR_MLE_C
SX3_k127_6446127_15	1297865.APJD01000005_gene3502	1.506e-179	562.0	COG1116@1|root,COG1116@2|Bacteria,1MUIM@1224|Proteobacteria,2TRHM@28211|Alphaproteobacteria,3JUE4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	ATPases associated with a variety of cellular activities	MA20_16895	-	-	ko:K02049	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	ABC_tran
SX3_k127_6446127_10	1297865.APJD01000005_gene3501	6.514e-207	661.0	COG0715@1|root,COG0715@2|Bacteria,1MVRA@1224|Proteobacteria,2VF1U@28211|Alphaproteobacteria,3JSBZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	NMT1/THI5 like	MA20_16900	-	-	ko:K02051	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	NMT1
SX3_k127_6446127_17	1297865.APJD01000005_gene3500	3.465e-168	529.0	COG0600@1|root,COG0600@2|Bacteria,1MVAE@1224|Proteobacteria,2VF1T@28211|Alphaproteobacteria,3JUMS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Binding-protein-dependent transport system inner membrane component	MA20_16905	-	-	ko:K02050	-	M00188	-	-	ko00000,ko00002,ko02000	3.A.1.16,3.A.1.17	-	-	BPD_transp_1
SX3_k127_6446127_19	1297865.APJD01000005_gene3499	5.425e-133	426.0	COG1309@1|root,COG1309@2|Bacteria,1R5AI@1224|Proteobacteria,2U7HG@28211|Alphaproteobacteria,3JTCA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_16910	-	-	ko:K09017	-	-	-	-	ko00000,ko03000	-	-	-	TetR_C_3,TetR_C_9,TetR_N
SX3_k127_6446127_14	1297865.APJD01000005_gene3498	1.488e-179	566.0	COG0346@1|root,COG0346@2|Bacteria,1MXZ4@1224|Proteobacteria,2TUBZ@28211|Alphaproteobacteria,3JR1S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Glyoxalase-like domain	MA20_16915	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase,Glyoxalase_3,Glyoxalase_4
SX3_k127_6446127_11	1297865.APJD01000005_gene3497	1.27e-197	631.0	COG0524@1|root,COG0524@2|Bacteria,1PB7X@1224|Proteobacteria,2U0Y2@28211|Alphaproteobacteria,3JT7W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	belongs to the carbohydrate kinase PfkB family	MA20_16920	-	-	-	-	-	-	-	-	-	-	-	PfkB
SX3_k127_6446127_12	1297865.APJD01000005_gene3496	1.634e-190	596.0	COG0524@1|root,COG0524@2|Bacteria,1MV5B@1224|Proteobacteria,2TSUM@28211|Alphaproteobacteria,3JSQX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway	rbsK	-	2.7.1.15	ko:K00852	ko00030,map00030	-	R01051,R02750	RC00002,RC00017	ko00000,ko00001,ko01000	-	-	-	PfkB
SX3_k127_6446127_5	1297865.APJD01000005_gene3495	3.32e-258	799.0	COG0446@1|root,COG0446@2|Bacteria,1NR3M@1224|Proteobacteria,2TS0K@28211|Alphaproteobacteria,3JURU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Reductase C-terminal	MA20_16930	-	1.18.1.3	ko:K00529	ko00071,ko00360,ko01120,ko01220,map00071,map00360,map01120,map01220	M00545	R02000,R06782,R06783	RC00098	br01602,ko00000,ko00001,ko00002,ko01000	-	-	-	Pyr_redox_2,Reductase_C
SX3_k127_6446127_16	1297865.APJD01000005_gene3494	9.26e-169	531.0	COG1024@1|root,COG1024@2|Bacteria,1NQM5@1224|Proteobacteria,2TSP1@28211|Alphaproteobacteria,3JUF6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	MA20_16935	-	5.3.3.18	ko:K15866	ko00360,ko01120,map00360,map01120	-	R09837,R09839	RC00004,RC00326,RC02689,RC03003	ko00000,ko00001,ko01000	-	-	-	ECH_1
SX3_k127_6446127_20	1297865.APJD01000005_gene3493	4.536e-122	392.0	COG0406@1|root,COG0406@2|Bacteria,1QNKM@1224|Proteobacteria,2TTNR@28211|Alphaproteobacteria,3JVJN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Phosphoglycerate mutase family	-	-	-	ko:K15640	-	-	-	-	ko00000	-	-	-	His_Phos_1
SX3_k127_6446127_3	1297865.APJD01000005_gene3492	3.815e-278	857.0	COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2TQW5@28211|Alphaproteobacteria,3JT73@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporter, DctM component	-	-	-	-	-	-	-	-	-	-	-	-	DctM
SX3_k127_6446127_21	1297865.APJD01000005_gene3491	1.39e-118	382.0	COG3090@1|root,COG3090@2|Bacteria,1PR3S@1224|Proteobacteria,2U0AG@28211|Alphaproteobacteria,3JVM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Tripartite ATP-independent periplasmic transporters, DctQ component	-	-	-	-	-	-	-	-	-	-	-	-	DctQ
SX3_k127_6446127_8	1297865.APJD01000005_gene3490	2.18e-211	658.0	COG1638@1|root,COG1638@2|Bacteria,1P6X1@1224|Proteobacteria,2TRTU@28211|Alphaproteobacteria,3JTDG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	-	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_6446127_1	1297865.APJD01000005_gene3489	0.0	1135.0	COG0129@1|root,COG0129@2|Bacteria,1MV4I@1224|Proteobacteria,2TQRW@28211|Alphaproteobacteria,3JT1Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	Belongs to the IlvD Edd family	MA20_16960	-	4.2.1.9	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R04441,R05070	RC00468,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
SX3_k127_6446127_18	1297865.APJD01000005_gene3488	4.204e-144	458.0	COG1802@1|root,COG1802@2|Bacteria,1MXNB@1224|Proteobacteria,2TUI3@28211|Alphaproteobacteria,3JT57@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_6446127_22	1297865.APJD01000005_gene3487	8.454e-118	381.0	COG5342@1|root,COG5342@2|Bacteria,1R7VC@1224|Proteobacteria,2U4FC@28211|Alphaproteobacteria,3JXYJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	invasion associated locus B	-	-	-	-	-	-	-	-	-	-	-	-	IalB
SX3_k127_6446127_13	1297865.APJD01000005_gene3486	6.499e-182	574.0	COG0451@1|root,COG0451@2|Bacteria,1MWVE@1224|Proteobacteria,2TS8F@28211|Alphaproteobacteria,3JU8F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	3-beta hydroxysteroid dehydrogenase/isomerase family	MA20_16995	-	1.1.1.203	ko:K18981	ko00053,map00053	-	R10841	RC00066	ko00000,ko00001,ko01000	-	-	-	Epimerase
SX3_k127_6446127_7	1297865.APJD01000005_gene3485	1.143e-222	692.0	COG3386@1|root,COG3386@2|Bacteria,1MU0C@1224|Proteobacteria,2TSXG@28211|Alphaproteobacteria,3JV1I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	SMP-30/Gluconolaconase/LRE-like region	-	-	3.1.1.17	ko:K01053,ko:K14274	ko00030,ko00040,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00040,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220	M00129	R01519,R02427,R02933,R03751	RC00537,RC00713,RC00983	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	SGL
SX3_k127_6446127_24	1297865.APJD01000005_gene3484	3.326e-88	299.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JQU8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	MA20_17005	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_6446127_9	1297865.APJD01000005_gene3484	1.483e-209	661.0	COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2TQR1@28211|Alphaproteobacteria,3JQU8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Aldehyde dehydrogenase family	MA20_17005	-	1.2.1.3	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	M00135	R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146	RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldedh
SX3_k127_6446127_0	1297865.APJD01000005_gene3483	0.0	1614.0	COG2609@1|root,COG2609@2|Bacteria,1MV21@1224|Proteobacteria,2TSZ9@28211|Alphaproteobacteria,3JRFU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	MA20_17010	-	1.2.4.1	ko:K00163	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200	M00307	R00014,R00209,R01699,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Transketolase_N
SX3_k127_6446127_23	1297865.APJD01000005_gene3482	4.452e-90	302.0	COG1522@1|root,COG1522@2|Bacteria,1MX7R@1224|Proteobacteria,2VG6E@28211|Alphaproteobacteria,3JSFH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	MA20_17015	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_24
SX3_k127_6446866_2	1297865.APJD01000020_gene272	1.296e-205	640.0	COG0498@1|root,COG0498@2|Bacteria,1R7X1@1224|Proteobacteria,2TUR3@28211|Alphaproteobacteria,3JU0E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	MA20_41710	-	4.2.3.1	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	M00018	R01466,R05086	RC00017,RC00526	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_6446866_1	1297865.APJD01000020_gene273	5.934e-207	645.0	COG3181@1|root,COG3181@2|Bacteria,1MW18@1224|Proteobacteria,2TSKY@28211|Alphaproteobacteria,3JSS0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	MA20_41705	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_6446866_0	1297865.APJD01000020_gene275	0.0	1217.0	COG0457@1|root,COG0741@1|root,COG0457@2|Bacteria,COG0741@2|Bacteria,1MV3F@1224|Proteobacteria,2TRDB@28211|Alphaproteobacteria,3JUG1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Transglycosylase SLT domain	slt	-	-	ko:K08309	-	-	-	-	ko00000,ko01000,ko01011	-	GH23	-	SLT
SX3_k127_6475740_12	1297865.APJD01000003_gene6360	5.199e-155	491.0	COG3396@1|root,COG3396@2|Bacteria,1MXUK@1224|Proteobacteria,2TTIG@28211|Alphaproteobacteria,3JSI1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	benzoyl-CoA oxygenase	boxB	-	1.14.13.208	ko:K15512	ko00362,map00362	-	R09555	RC01739	ko00000,ko00001,ko01000	-	-	-	-
SX3_k127_6475740_0	1297865.APJD01000003_gene6359	0.0	1126.0	COG1024@1|root,COG1024@2|Bacteria,1N817@1224|Proteobacteria,2TQTE@28211|Alphaproteobacteria,3JTG3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	boxC	-	4.1.2.44	ko:K15513	ko00362,map00362	-	R09556	RC03426	ko00000,ko00001,ko01000	-	-	-	ECH_1
SX3_k127_6475740_7	1297865.APJD01000003_gene6358	5.471e-189	594.0	COG2267@1|root,COG2267@2|Bacteria,1NK3M@1224|Proteobacteria,2TRP8@28211|Alphaproteobacteria,3JWKI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Alpha beta hydrolase	MA20_22480	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_6475740_1	1297865.APJD01000003_gene6357	0.0	1026.0	COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,2TR3P@28211|Alphaproteobacteria,3JQQ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	benzoate-CoA ligase	MA20_22485	-	6.2.1.25,6.2.1.27	ko:K04105	ko00362,ko00627,ko01100,ko01120,ko01220,map00362,map00627,map01100,map01120,map01220	-	R01300,R01422	RC00004,RC00174	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_6475740_10	1297865.APJD01000003_gene6356	6.31e-172	574.0	COG0703@1|root,COG1476@1|root,COG0703@2|Bacteria,COG1476@2|Bacteria,1MX66@1224|Proteobacteria,2TQWU@28211|Alphaproteobacteria,3JUIK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EK	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate	aroK	-	-	ko:K15546	-	-	-	-	ko00000,ko03000	-	-	-	HTH_3,HTH_31,SKI
SX3_k127_6475740_11	1297865.APJD01000003_gene6355	7.344e-161	508.0	COG1414@1|root,COG1414@2|Bacteria,1QYTM@1224|Proteobacteria,2U04P@28211|Alphaproteobacteria,3JQQZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix isocitrate lyase regulation	pcaR	-	-	ko:K02624,ko:K20539	ko02024,map02024	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_IclR,IclR
SX3_k127_6475740_3	1297865.APJD01000003_gene6354	1.601e-317	971.0	COG4638@1|root,COG4638@2|Bacteria,1MX47@1224|Proteobacteria,2TV03@28211|Alphaproteobacteria,3JV2C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rieske [2Fe-2S] domain	MA20_22525	-	-	-	-	-	-	-	-	-	-	-	Aromatic_hydrox,Rieske
SX3_k127_6475740_2	1297865.APJD01000003_gene6353	5e-324	990.0	COG0174@1|root,COG0174@2|Bacteria,1MU6V@1224|Proteobacteria,2VG5K@28211|Alphaproteobacteria,3JTG6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the glutamine synthetase family	MA20_22530	-	6.3.1.2	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	-	R00253	RC00010,RC02798	ko00000,ko00001,ko01000,ko04147	-	-	-	Gln-synt_C,Gln-synt_N_2
SX3_k127_6475740_14	1038860.AXAP01000010_gene7734	2.442e-136	435.0	COG0410@1|root,COG0410@2|Bacteria,1MVYI@1224|Proteobacteria,2TSRT@28211|Alphaproteobacteria,3JR1U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	MA20_22545	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_6475740_13	1297865.APJD01000003_gene6351	1.59e-153	487.0	COG0411@1|root,COG0411@2|Bacteria,1MXHT@1224|Proteobacteria,2TSWS@28211|Alphaproteobacteria,3JT2Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid ATP-binding cassette transporter	MA20_22550	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_6475740_6	1297865.APJD01000003_gene6350	1.174e-193	608.0	COG4177@1|root,COG4177@2|Bacteria,1MUPI@1224|Proteobacteria,2TSID@28211|Alphaproteobacteria,3JU2M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	MA20_22555	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_6475740_9	1297865.APJD01000003_gene6349	9.049e-178	559.0	COG0559@1|root,COG0559@2|Bacteria,1MVND@1224|Proteobacteria,2TSCF@28211|Alphaproteobacteria,3JSV3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_22560	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_6475740_5	1230476.C207_02779	1.671e-252	782.0	COG0683@1|root,COG0683@2|Bacteria,1MVV2@1224|Proteobacteria,2TRFU@28211|Alphaproteobacteria,3JRAY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Receptor family ligand binding region	MA20_22630	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_6475740_15	1297865.APJD01000003_gene6347	2.221e-112	366.0	2BSZA@1|root,32N37@2|Bacteria,1RBPC@1224|Proteobacteria,2U6DZ@28211|Alphaproteobacteria,3JYGX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	DUF805
SX3_k127_6475740_8	1297865.APJD01000003_gene6346	9.387e-189	597.0	COG1595@1|root,COG1595@2|Bacteria,1R44W@1224|Proteobacteria,2U1R0@28211|Alphaproteobacteria,3JVBC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2,SnoaL_2
SX3_k127_6475740_17	1297865.APJD01000003_gene6345	3.132e-57	203.0	COG3631@1|root,COG3631@2|Bacteria,1RI43@1224|Proteobacteria,2UAI9@28211|Alphaproteobacteria,3JZCQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Ketosteroid isomerase-related protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6475740_4	1297865.APJD01000003_gene6344	5.711e-271	835.0	COG1252@1|root,COG1252@2|Bacteria,1MX96@1224|Proteobacteria,2TQT2@28211|Alphaproteobacteria,3JTS4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Pyridine nucleotide-disulphide oxidoreductase	ndh	-	1.6.99.3	ko:K03885	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2,cNMP_binding
SX3_k127_6475740_16	1297865.APJD01000003_gene6343	1.49e-84	289.0	COG0627@1|root,COG0627@2|Bacteria,1MX6W@1224|Proteobacteria,2TSCC@28211|Alphaproteobacteria,3JTMK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tannase and feruloyl esterase	-	-	-	-	-	-	-	-	-	-	-	-	Tannase
SX3_k127_6477277_7	1037409.BJ6T_06680	1.975e-05	47.0	COG0864@1|root,COG0864@2|Bacteria,1RK4R@1224|Proteobacteria,2U9KJ@28211|Alphaproteobacteria,3JWZM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	nikR	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141	-	ko:K07722	-	-	-	-	ko00000,ko03000	-	-	-	NikR_C,RHH_1
SX3_k127_6477277_2	1297865.APJD01000011_gene6720	3.557e-212	662.0	COG0834@1|root,COG0834@2|Bacteria,1MXIA@1224|Proteobacteria,2VETI@28211|Alphaproteobacteria,3JS6K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	ET	Bacterial periplasmic substrate-binding proteins	MA20_22110	-	-	ko:K02030	-	M00236	-	-	ko00000,ko00002,ko02000	3.A.1.3	-	-	SBP_bac_3
SX3_k127_6477277_3	1297865.APJD01000011_gene6719	1.456e-124	400.0	COG1999@1|root,COG1999@2|Bacteria,1RHJ8@1224|Proteobacteria,2U9DV@28211|Alphaproteobacteria,3JREY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	electron transport protein SCO1 SenC	MA20_22115	-	-	ko:K07152	-	-	-	-	ko00000,ko03029	-	-	-	SCO1-SenC
SX3_k127_6477277_6	1297865.APJD01000011_gene6718	4.415e-31	122.0	2AIJV@1|root,3191Z@2|Bacteria,1N41B@1224|Proteobacteria,2UCTX@28211|Alphaproteobacteria,3K0UP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6477277_5	1230476.C207_03128	1.152e-96	321.0	2EHAM@1|root,33B2H@2|Bacteria,1MY41@1224|Proteobacteria,2U1A7@28211|Alphaproteobacteria,3JRY4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_22125	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6477277_0	1297865.APJD01000011_gene6716	0.0	1139.0	COG3573@1|root,COG3573@2|Bacteria,1MVX8@1224|Proteobacteria,2TVKJ@28211|Alphaproteobacteria,3JSJV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FAD binding domain	MA20_22130	-	-	ko:K07077	-	-	-	-	ko00000	-	-	-	FAD_binding_2
SX3_k127_6477277_1	1297865.APJD01000011_gene6715	1.75e-316	973.0	COG1167@1|root,COG1167@2|Bacteria,1MVGT@1224|Proteobacteria,2TRK7@28211|Alphaproteobacteria,3JQR8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix gluconate operon transcriptional repressor	-	-	-	ko:K00375	-	-	-	-	ko00000,ko03000	-	-	-	Aminotran_1_2,GntR
SX3_k127_6477277_4	1297865.APJD01000011_gene6714	1.175e-108	354.0	COG0477@1|root,COG2814@2|Bacteria,1R50B@1224|Proteobacteria,2U1YA@28211|Alphaproteobacteria,3JWT8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	COG0477 Permeases of the major facilitator superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_6479089_0	1297865.APJD01000020_gene249	0.0	1082.0	COG0504@1|root,COG0504@2|Bacteria,1MUIT@1224|Proteobacteria,2TS4Y@28211|Alphaproteobacteria,3JTRN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates	pyrG	-	6.3.4.2	ko:K01937	ko00240,ko01100,map00240,map01100	M00052	R00571,R00573	RC00010,RC00074	ko00000,ko00001,ko00002,ko01000	-	-	-	CTP_synth_N,GATase
SX3_k127_6479089_9	1297865.APJD01000020_gene250	1.445e-68	252.0	COG1219@1|root,COG1219@2|Bacteria,1P07H@1224|Proteobacteria,2UU1R@28211|Alphaproteobacteria,3K501@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ClpX C4-type zinc finger	-	-	-	-	-	-	-	-	-	-	-	-	zf-C4_ClpX
SX3_k127_6479089_7	1297865.APJD01000020_gene251	1.834e-128	415.0	COG3963@1|root,COG3963@2|Bacteria,1N1KB@1224|Proteobacteria,2U646@28211|Alphaproteobacteria,3JSCT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Ribosomal RNA adenine dimethylase	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_25,RrnaAD
SX3_k127_6479089_1	1297865.APJD01000020_gene252	1.35e-288	899.0	COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,2TVIP@28211|Alphaproteobacteria,3JSKQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HAMP,HATPase_c,HisKA
SX3_k127_6479089_6	1297865.APJD01000020_gene253	1.029e-136	436.0	COG0745@1|root,COG0745@2|Bacteria,1NCKY@1224|Proteobacteria,2TRPQ@28211|Alphaproteobacteria,3JRDE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Transcriptional regulatory protein, C terminal	-	-	-	ko:K02483	-	-	-	-	ko00000,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_6479089_10	1297865.APJD01000020_gene254	7.445e-64	226.0	COG5507@1|root,COG5507@2|Bacteria,1RH3Q@1224|Proteobacteria,2U9SM@28211|Alphaproteobacteria,3JYTR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NIPSNAP	MA20_41850	-	-	-	-	-	-	-	-	-	-	-	NIPSNAP
SX3_k127_6479089_11	1297865.APJD01000020_gene255	1.698e-63	220.0	COG4104@1|root,COG4104@2|Bacteria,1REJN@1224|Proteobacteria,2U7TV@28211|Alphaproteobacteria,3JZBF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PAAR motif	-	-	-	-	-	-	-	-	-	-	-	-	PAAR_motif
SX3_k127_6479089_5	1297865.APJD01000020_gene256	1.073e-174	550.0	COG2877@1|root,COG2877@2|Bacteria,1MV91@1224|Proteobacteria,2TRJX@28211|Alphaproteobacteria,3JUB6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	3-deoxy-D-manno-octulosonic acid 8-phosphate synthase	kdsA	-	2.5.1.55	ko:K01627	ko00540,ko01100,map00540,map01100	M00063	R03254	RC00435	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	DAHP_synth_1
SX3_k127_6479089_4	1297865.APJD01000020_gene257	3.969e-246	762.0	COG0477@1|root,COG2814@2|Bacteria,1R7QS@1224|Proteobacteria,2TUXM@28211|Alphaproteobacteria,3JS25@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_6479089_8	1297865.APJD01000020_gene258	7.434e-104	338.0	COG0780@1|root,COG0780@2|Bacteria,1MW0M@1224|Proteobacteria,2U57X@28211|Alphaproteobacteria,3JSS2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)	queF	-	1.7.1.13	ko:K09457	ko00790,ko01100,map00790,map01100	-	R07605	RC01875	ko00000,ko00001,ko01000,ko03016	-	-	-	QueF
SX3_k127_6479089_3	1297865.APJD01000020_gene259	1.392e-274	846.0	COG0148@1|root,COG0148@2|Bacteria,1MU1N@1224|Proteobacteria,2TR04@28211|Alphaproteobacteria,3JQMG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis	eno	-	4.2.1.11	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	M00001,M00002,M00003,M00346,M00394	R00658	RC00349	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	-	-	-	Enolase_C,Enolase_N
SX3_k127_6479089_2	1297865.APJD01000020_gene260	1.101e-286	885.0	COG1287@1|root,COG1287@2|Bacteria,1N2R1@1224|Proteobacteria,2UEBP@28211|Alphaproteobacteria,3K478@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	oligosaccharyl transferase activity	-	-	-	-	-	-	-	-	-	-	-	-	GT87
SX3_k127_6479089_12	1297865.APJD01000020_gene261	1.001e-39	149.0	COG0604@1|root,COG0604@2|Bacteria,1MW2V@1224|Proteobacteria,2U07M@28211|Alphaproteobacteria,3JQSM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_6480040_7	1297865.APJD01000006_gene4518	1.521e-154	488.0	COG1835@1|root,COG1835@2|Bacteria,1RB2J@1224|Proteobacteria,2U5WQ@28211|Alphaproteobacteria,3K35R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyltransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Acyl_transf_3
SX3_k127_6480040_5	1297865.APJD01000006_gene4519	8.211e-169	557.0	COG0730@1|root,COG0730@2|Bacteria,1MVY3@1224|Proteobacteria,2TU6M@28211|Alphaproteobacteria,3JWBV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfite exporter TauE/SafE	-	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_6480040_2	1297865.APJD01000006_gene4520	3.543e-292	898.0	COG2358@1|root,COG2358@2|Bacteria,1R5N8@1224|Proteobacteria,2TSTB@28211|Alphaproteobacteria,3JQZS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NMT1-like family	-	-	-	-	-	-	-	-	-	-	-	-	NMT1_3
SX3_k127_6480040_3	1297865.APJD01000006_gene4521	5.977e-232	718.0	COG0438@1|root,COG0438@2|Bacteria,1MUB7@1224|Proteobacteria,2TQQ0@28211|Alphaproteobacteria,3JTNY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	glycosyl transferase group 1	MA20_01620	-	-	-	-	-	-	-	-	-	-	-	Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
SX3_k127_6480040_8	1297865.APJD01000006_gene4522	7.952e-143	457.0	COG0500@1|root,COG2226@2|Bacteria,1MVIS@1224|Proteobacteria,2TV8R@28211|Alphaproteobacteria,3JRAV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methionine biosynthesis protein MetW	pmtA	-	2.1.1.17,2.1.1.71	ko:K00570	ko00564,ko01100,ko01110,map00564,map01100,map01110	M00091	R01320,R02056,R03424	RC00003,RC00060,RC00181,RC00496	ko00000,ko00001,ko00002,ko01000	-	-	-	Methyltransf_11
SX3_k127_6480040_9	1297865.APJD01000006_gene4523	6.531e-135	430.0	28MZJ@1|root,2ZB69@2|Bacteria,1R6VF@1224|Proteobacteria,2U26P@28211|Alphaproteobacteria,3JR7G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_01630	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6480040_12	1038860.AXAP01000060_gene2284	4.316e-06	60.0	COG0135@1|root,COG0135@2|Bacteria,1RA87@1224|Proteobacteria,2U7CH@28211|Alphaproteobacteria,3JRQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the TrpF family	trpF	-	5.3.1.24	ko:K01817	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	M00023	R03509	RC00945	ko00000,ko00001,ko00002,ko01000	-	-	-	PRAI
SX3_k127_6480040_0	1297865.APJD01000006_gene4524	0.0	1145.0	COG0001@1|root,COG0001@2|Bacteria,1MUY5@1224|Proteobacteria,2TT6G@28211|Alphaproteobacteria,3JU7G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Aminotransferase class-III	MA20_01635	-	5.4.3.8	ko:K01845	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	M00121	R02272	RC00677	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_3
SX3_k127_6480040_4	1297865.APJD01000006_gene4525	4.883e-190	595.0	COG0688@1|root,COG0688@2|Bacteria,1MVT4@1224|Proteobacteria,2U0K0@28211|Alphaproteobacteria,3JRIP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer)	MA20_01640	-	4.1.1.65	ko:K01613	ko00564,ko01100,ko01110,map00564,map01100,map01110	M00093	R02055	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	PS_Dcarbxylase
SX3_k127_6480040_6	1297865.APJD01000006_gene4526	7.03e-157	497.0	COG1051@1|root,COG1051@2|Bacteria,1R5RJ@1224|Proteobacteria,2U1BJ@28211|Alphaproteobacteria,3JV0X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	NUDIX domain	-	-	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	NUDIX
SX3_k127_6480040_1	1297865.APJD01000006_gene4527	2.836e-305	940.0	COG4254@1|root,COG4254@2|Bacteria,1N3NK@1224|Proteobacteria,2TV69@28211|Alphaproteobacteria,3JUIR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	FecR protein	-	-	-	-	-	-	-	-	-	-	-	-	FecR
SX3_k127_6480040_10	1297865.APJD01000006_gene4528	7.51e-121	389.0	COG2917@1|root,COG2917@2|Bacteria,1P9FF@1224|Proteobacteria,2TR7Y@28211|Alphaproteobacteria,3JVWH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Intracellular septation protein A	-	-	-	-	-	-	-	-	-	-	-	-	IspA
SX3_k127_6480040_11	1297865.APJD01000006_gene4529	8.937e-121	388.0	COG2207@1|root,COG2207@2|Bacteria,1P4M5@1224|Proteobacteria,2U37A@28211|Alphaproteobacteria,3JWQY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
SX3_k127_651934_7	1297865.APJD01000031_gene1611	3.912e-12	66.0	COG0517@1|root,COG0517@2|Bacteria,1RB0G@1224|Proteobacteria,2U5QI@28211|Alphaproteobacteria,3JYHM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain in cystathionine beta-synthase and other proteins.	-	-	-	-	-	-	-	-	-	-	-	-	CBS
SX3_k127_651934_3	1230476.C207_04471	1.967e-65	226.0	2DDX0@1|root,32U27@2|Bacteria,1N2PV@1224|Proteobacteria,2U67F@28211|Alphaproteobacteria,3JYJV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_651934_0	1297865.APJD01000031_gene1609	0.0	1125.0	COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,2TR7S@28211|Alphaproteobacteria,3JU1V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K03821	ko00650,map00650	-	R04254	RC00004	ko00000,ko00001,ko01000	-	-	-	PHBC_N,PhaC_N
SX3_k127_651934_6	1230476.C207_04469	1.925e-14	76.0	2ASPJ@1|root,31I4E@2|Bacteria,1NFMA@1224|Proteobacteria,2UHBR@28211|Alphaproteobacteria,3K197@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_651934_2	1297865.APJD01000031_gene1608	3.589e-227	707.0	COG1063@1|root,COG1063@2|Bacteria,1MW6Y@1224|Proteobacteria,2TSUK@28211|Alphaproteobacteria,3JUZP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Zinc-binding dehydrogenase	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_651934_1	1230476.C207_04467	2.095e-282	875.0	COG0645@1|root,COG2187@1|root,COG0645@2|Bacteria,COG2187@2|Bacteria,1MU9M@1224|Proteobacteria,2TQJN@28211|Alphaproteobacteria,3JR3X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain	-	-	-	ko:K07028	-	-	-	-	ko00000	-	-	-	AAA_33,APH
SX3_k127_651934_5	1297865.APJD01000031_gene1607	1.743e-16	78.0	COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,2TTI9@28211|Alphaproteobacteria,3JVVV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alcohol dehydrogenase GroES-like domain	-	-	1.1.1.1	ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	-	R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273	ko00000,ko00001,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_6544608_0	1297865.APJD01000007_gene2175	0.0	3061.0	COG1020@1|root,COG1020@2|Bacteria,1QK4F@1224|Proteobacteria,2TRUN@28211|Alphaproteobacteria,3JQV9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phosphopantetheine attachment site	-	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C,Condensation,Nitroreductase,PP-binding,Thioesterase
SX3_k127_6569714_3	1297865.APJD01000020_gene266	2.083e-127	409.0	COG1071@1|root,COG1071@2|Bacteria,1MU5R@1224|Proteobacteria,2TRSS@28211|Alphaproteobacteria,3JS9V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	pdhA	-	1.2.4.1	ko:K00161	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	M00307	R00014,R00209,R01699,R03270	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	E1_dh
SX3_k127_6569714_5	1297865.APJD01000020_gene265	1.96e-57	201.0	COG2919@1|root,COG2919@2|Bacteria,1N8WI@1224|Proteobacteria,2UGEU@28211|Alphaproteobacteria,3JZFR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Septum formation initiator	MA20_41765	-	-	-	-	-	-	-	-	-	-	-	DivIC
SX3_k127_6569714_4	1297865.APJD01000020_gene264	8.639e-111	366.0	COG0431@1|root,COG0431@2|Bacteria,1RAFI@1224|Proteobacteria,2TUBI@28211|Alphaproteobacteria,3JVXT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NADPH-dependent FMN reductase	yieF	-	-	ko:K19784	-	-	-	-	ko00000	-	-	-	FMN_red
SX3_k127_6569714_0	1297865.APJD01000020_gene263	2.671e-241	748.0	COG1181@1|root,COG1181@2|Bacteria,1MUTB@1224|Proteobacteria,2TREC@28211|Alphaproteobacteria,3JUJ8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Cell wall formation	ddlA	-	6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	-	R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Dala_Dala_lig_C,Dala_Dala_lig_N
SX3_k127_6569714_2	1297865.APJD01000020_gene262	7.786e-178	561.0	COG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,2TSTP@28211|Alphaproteobacteria,3JU6V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_6569714_1	1297865.APJD01000020_gene261	6.951e-194	605.0	COG0604@1|root,COG0604@2|Bacteria,1MW2V@1224|Proteobacteria,2U07M@28211|Alphaproteobacteria,3JQSM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases	-	-	-	-	-	-	-	-	-	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_6574886_3	883078.HMPREF9695_04436	2.897e-212	665.0	COG0530@1|root,COG0530@2|Bacteria,1QDUB@1224|Proteobacteria,2U51H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	P	Sodium/calcium exchanger protein	-	-	-	ko:K07301	-	-	-	-	ko00000,ko02000	2.A.19.5	-	-	Na_Ca_ex
SX3_k127_6574886_5	1230476.C207_04613	3.469e-92	306.0	COG1285@1|root,COG1285@2|Bacteria,1MURJ@1224|Proteobacteria,2U4ZF@28211|Alphaproteobacteria,3JWRC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MgtC family	-	-	-	ko:K07507	-	-	-	-	ko00000,ko02000	9.B.20	-	-	MgtC
SX3_k127_6574886_1	883078.HMPREF9695_04438	0.0	1079.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR56@28211|Alphaproteobacteria,3JRCG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	E1-E2 ATPase	zntA	GO:0000041,GO:0003674,GO:0003824,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006829,GO:0006950,GO:0008150,GO:0008324,GO:0008551,GO:0009636,GO:0010035,GO:0010038,GO:0010043,GO:0010312,GO:0015075,GO:0015086,GO:0015087,GO:0015094,GO:0015099,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015675,GO:0015691,GO:0015692,GO:0016020,GO:0016021,GO:0016462,GO:0016463,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0034220,GO:0035444,GO:0042221,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044425,GO:0044464,GO:0046686,GO:0046873,GO:0046915,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070574,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0090662,GO:0097501,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0099131,GO:0099132,GO:1990359	3.6.3.3,3.6.3.5	ko:K01534	-	-	-	-	ko00000,ko01000	3.A.3.6	-	-	E1-E2_ATPase,HMA,Hydrolase
SX3_k127_6574886_7	1230476.C207_04610	4.523e-48	176.0	2C7C3@1|root,346ZH@2|Bacteria,1MYKN@1224|Proteobacteria,2UAAH@28211|Alphaproteobacteria,3K00S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6574886_6	883078.HMPREF9695_04440	8.248e-57	200.0	2EF80@1|root,3390Z@2|Bacteria,1RIUP@1224|Proteobacteria,2UB21@28211|Alphaproteobacteria,3JZHX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6574886_0	504832.OCAR_7738	0.0	1976.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
SX3_k127_6574886_8	78245.Xaut_0615	6.105e-37	142.0	COG0347@1|root,COG0347@2|Bacteria,1RDUD@1224|Proteobacteria,2U8JR@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Belongs to the P(II) protein family	-	-	-	-	-	-	-	-	-	-	-	-	P-II
SX3_k127_6574886_4	504832.OCAR_7740	1.892e-180	569.0	COG0845@1|root,COG0845@2|Bacteria,1MX8W@1224|Proteobacteria,2TRPM@28211|Alphaproteobacteria,3JQVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K15727	-	-	-	-	ko00000,ko02000	8.A.1.2.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_6574886_2	504832.OCAR_7741	4.41e-249	772.0	COG1538@1|root,COG1538@2|Bacteria,1NEZC@1224|Proteobacteria,2TTFK@28211|Alphaproteobacteria,3JQV0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	-	-	-	ko:K15725	-	-	-	-	ko00000,ko02000	1.B.17.2.2	-	-	OEP
SX3_k127_6574886_9	323097.Nham_4529	4.192e-23	102.0	2AFC5@1|root,315BQ@2|Bacteria,1ND5T@1224|Proteobacteria,2UHYD@28211|Alphaproteobacteria,3K17S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6604912_0	883078.HMPREF9695_04935	2.35e-321	991.0	COG3843@1|root,COG3843@2|Bacteria,1N6J7@1224|Proteobacteria,2TXB7@28211|Alphaproteobacteria,3K6CH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Relaxase/Mobilisation nuclease domain	-	-	-	-	-	-	-	-	-	-	-	-	Relaxase
SX3_k127_6604912_13	288000.BBta_3389	3.581e-40	154.0	COG0526@1|root,COG0526@2|Bacteria,1MZQJ@1224|Proteobacteria,2UBRX@28211|Alphaproteobacteria,3JZVJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CO	Thioredoxin-like	-	-	-	-	-	-	-	-	-	-	-	-	Thioredoxin
SX3_k127_6604912_5	693986.MOC_2971	2.6e-91	306.0	COG0785@1|root,COG0785@2|Bacteria,1MVV0@1224|Proteobacteria,2TUNG@28211|Alphaproteobacteria,1JQRY@119045|Methylobacteriaceae	28211|Alphaproteobacteria	O	PFAM cytochrome c biogenesis protein transmembrane region	dsbD	-	-	-	-	-	-	-	-	-	-	-	DsbD
SX3_k127_6604912_9	876269.ARWA01000001_gene1165	1.072e-66	235.0	COG1309@1|root,COG1309@2|Bacteria	2|Bacteria	K	transcriptional regulator	-	-	-	ko:K16137	-	-	-	-	ko00000,ko03000	-	-	-	TetR_C_6,TetR_N
SX3_k127_6604912_14	876269.ARWA01000001_gene1164	1.566e-36	145.0	2DQ2S@1|root,334IA@2|Bacteria,1NAEM@1224|Proteobacteria,2UK5N@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6604912_11	883078.HMPREF9695_05022	7.591e-53	199.0	COG2771@1|root,COG2771@2|Bacteria,1RE9I@1224|Proteobacteria,2TXIA@28211|Alphaproteobacteria,3K6WM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Autoinducer binding domain	-	-	-	ko:K18098	ko02024,map02024	-	-	-	ko00000,ko00001,ko03000	-	-	-	Autoind_bind,GerE
SX3_k127_6604912_8	1041147.AUFB01000004_gene5038	2.259e-69	241.0	COG1595@1|root,COG1595@2|Bacteria,1MVS7@1224|Proteobacteria,2U0XJ@28211|Alphaproteobacteria,4BDQ1@82115|Rhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	rpoE7	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_6604912_10	1500306.JQLA01000007_gene6116	2.792e-62	220.0	COG4944@1|root,COG4944@2|Bacteria,1MXEV@1224|Proteobacteria,2TQKY@28211|Alphaproteobacteria,4BCIQ@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1109)	MA20_15880	-	-	-	-	-	-	-	-	-	-	-	DUF1109
SX3_k127_6604912_2	485913.Krac_6747	3.719e-154	498.0	COG1252@1|root,COG1252@2|Bacteria,2G5SS@200795|Chloroflexi	200795|Chloroflexi	C	PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase	-	-	1.6.99.3	ko:K03885	ko00190,map00190	-	-	-	ko00000,ko00001,ko01000	-	-	-	Pyr_redox_2
SX3_k127_6604912_7	1354722.JQLS01000001_gene4800	9.526e-81	273.0	COG1309@1|root,COG1309@2|Bacteria,1N6WG@1224|Proteobacteria,2UG93@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	transcriptional regulator	-	-	-	ko:K16137	-	-	-	-	ko00000,ko03000	-	-	-	TetR_C_13,TetR_N
SX3_k127_6604912_6	3988.XP_002536980.1	5.102e-89	298.0	COG1225@1|root,2SC9F@2759|Eukaryota	2759|Eukaryota	O	Redoxin	-	-	-	-	-	-	-	-	-	-	-	-	AhpC-TSA
SX3_k127_6604912_4	398527.Bphyt_5155	3.805e-122	399.0	COG0697@1|root,COG0697@2|Bacteria,1RI87@1224|Proteobacteria,2WFCF@28216|Betaproteobacteria,1KB6S@119060|Burkholderiaceae	28216|Betaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_6604912_3	1159870.KB907784_gene1628	1.57e-138	443.0	COG0625@1|root,COG0625@2|Bacteria,1MW27@1224|Proteobacteria,2W1E1@28216|Betaproteobacteria	28216|Betaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_N
SX3_k127_6604912_1	1500306.JQLA01000014_gene1942	5.941e-162	514.0	COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,2TTDF@28211|Alphaproteobacteria,4B91F@82115|Rhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase	MA20_16405	-	-	ko:K11209	-	-	-	-	ko00000,ko01000	-	-	-	GST_C,GST_C_2,GST_N
SX3_k127_6604912_12	78245.Xaut_2977	1.756e-48	177.0	COG0300@1|root,COG0300@2|Bacteria,1RAFB@1224|Proteobacteria,2U58G@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_6609935_13	1297865.APJD01000019_gene3324	4.749e-56	196.0	COG0300@1|root,COG0300@2|Bacteria,1MWNZ@1224|Proteobacteria,2TTFS@28211|Alphaproteobacteria,3JSV1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KR domain	-	-	-	ko:K07124	-	-	-	-	ko00000	-	-	-	adh_short
SX3_k127_6609935_3	1297865.APJD01000019_gene3325	2.242e-247	770.0	COG1940@1|root,COG1940@2|Bacteria,1MVCI@1224|Proteobacteria,2TUPT@28211|Alphaproteobacteria,3JTQG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GK	carbohydrate kinase activity	-	-	-	-	-	-	-	-	-	-	-	-	ROK
SX3_k127_6609935_4	1297865.APJD01000019_gene3326	2.489e-202	629.0	COG0596@1|root,COG0596@2|Bacteria,1MXH8@1224|Proteobacteria,2U12P@28211|Alphaproteobacteria,3JSWC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_1,Abhydrolase_6
SX3_k127_6609935_14	318996.AXAZ01000153_gene1690	2.054e-29	121.0	COG2801@1|root,COG2801@2|Bacteria,1N207@1224|Proteobacteria,2UEQQ@28211|Alphaproteobacteria,3JWDD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	HTH_32,rve,rve_3
SX3_k127_6609935_17	1038862.KB893837_gene1594	1.554e-06	55.0	COG0420@1|root,COG0420@2|Bacteria,1MXMJ@1224|Proteobacteria,2TUDV@28211|Alphaproteobacteria,3JWWZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Calcineurin-like phosphoesterase	-	-	-	ko:K03547	-	-	-	-	ko00000,ko03400	-	-	-	Metallophos
SX3_k127_6609935_16	648757.Rvan_0901	3.856e-08	66.0	2DRRH@1|root,33CRF@2|Bacteria,1NHYD@1224|Proteobacteria,2UN3H@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6609935_10	1297865.APJD01000019_gene3327	6.062e-103	336.0	COG1670@1|root,COG1670@2|Bacteria,1PY0X@1224|Proteobacteria,2VEXD@28211|Alphaproteobacteria,3JYU6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_3
SX3_k127_6609935_18	1297865.APJD01000019_gene3329	2.032e-05	49.0	COG1595@1|root,COG1595@2|Bacteria,1MXVA@1224|Proteobacteria,2TV85@28211|Alphaproteobacteria,3JR9S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	sigJ	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_6609935_11	1230476.C207_06364	1.529e-102	335.0	COG0454@1|root,COG0456@2|Bacteria,1N55N@1224|Proteobacteria,2VGVA@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1
SX3_k127_6609935_6	1297865.APJD01000019_gene3329	1.256e-188	589.0	COG1595@1|root,COG1595@2|Bacteria,1MXVA@1224|Proteobacteria,2TV85@28211|Alphaproteobacteria,3JR9S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	sigJ	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_6609935_8	1297865.APJD01000019_gene3330	1.233e-129	419.0	COG0655@1|root,COG0655@2|Bacteria,1MW7N@1224|Proteobacteria,2TR4Z@28211|Alphaproteobacteria,3JXG3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NADPH-dependent FMN reductase	-	-	-	-	-	-	-	-	-	-	-	-	FMN_red
SX3_k127_6609935_1	1297865.APJD01000019_gene3331	0.0	1013.0	COG0488@1|root,COG0488@2|Bacteria,1MV25@1224|Proteobacteria,2TSJ9@28211|Alphaproteobacteria,3JTSV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	ATPases associated with a variety of cellular activities	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
SX3_k127_6609935_2	1297865.APJD01000019_gene3332	1.583e-292	899.0	COG0443@1|root,COG0443@2|Bacteria,1MXBT@1224|Proteobacteria,2TS1I@28211|Alphaproteobacteria,3JS0W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Hsp70 protein	MA20_15110	-	-	ko:K04046	-	-	-	-	ko00000,ko03110	1.A.33	-	-	HSP70
SX3_k127_6609935_0	1297865.APJD01000019_gene3333	0.0	1637.0	COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,2TQMV@28211|Alphaproteobacteria,3JSPM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	PQQ-like domain	gcd	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	1.1.5.2	ko:K00117	ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130	-	R06620	RC00066	ko00000,ko00001,ko01000	-	-	-	PQQ,PQQ_2
SX3_k127_6609935_7	1297865.APJD01000019_gene3334	1.805e-159	508.0	COG0500@1|root,COG2226@2|Bacteria,1R51W@1224|Proteobacteria,2U7CV@28211|Alphaproteobacteria,3K5UG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11
SX3_k127_6609935_9	1297865.APJD01000019_gene3335	7.14e-107	349.0	COG3832@1|root,COG3832@2|Bacteria,1REIB@1224|Proteobacteria,2U8IT@28211|Alphaproteobacteria,3JZ5Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_6609935_5	1230476.C207_06373	4.785e-201	627.0	COG0583@1|root,COG0583@2|Bacteria,1MU7H@1224|Proteobacteria,2TS72@28211|Alphaproteobacteria,3JUZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6609935_12	1297865.APJD01000019_gene3337	2.357e-57	202.0	COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,2TSPI@28211|Alphaproteobacteria,3JTZ1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Uncharacterised MFS-type transporter YbfB	araJ	-	-	ko:K19577	-	-	-	-	ko00000,ko02000	2.A.1.2.65	-	-	MFS_1
SX3_k127_6612926_9	1297865.APJD01000012_gene1344	1.503e-123	396.0	COG1364@1|root,COG1364@2|Bacteria,1MU0T@1224|Proteobacteria,2TS98@28211|Alphaproteobacteria,3JT8Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate	argJ	GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.1.1,2.3.1.35	ko:K00620	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	M00028	R00259,R02282	RC00004,RC00064	ko00000,ko00001,ko00002,ko01000	-	-	-	ArgJ
SX3_k127_6612926_1	1297865.APJD01000012_gene1343	8.624e-276	852.0	COG4961@1|root,COG4961@2|Bacteria,1NN97@1224|Proteobacteria,2TS6W@28211|Alphaproteobacteria,3JVNP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Putative Flp pilus-assembly TadE/G-like	-	-	-	-	-	-	-	-	-	-	-	-	Tad
SX3_k127_6612926_13	1297865.APJD01000012_gene1342	3.571e-85	284.0	COG0494@1|root,COG0494@2|Bacteria,1RCZM@1224|Proteobacteria,2U7A4@28211|Alphaproteobacteria,3JY6Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	NUDIX domain	mutT	GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360	3.6.1.55	ko:K03574	-	-	-	-	ko00000,ko01000,ko03400	-	-	-	Acetyltransf_3,NUDIX,NUDIX_4
SX3_k127_6612926_6	1297865.APJD01000012_gene1341	2.128e-169	533.0	COG0500@1|root,COG2226@2|Bacteria,1PA5F@1224|Proteobacteria,2TRFS@28211|Alphaproteobacteria,3JRCR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Methyltransferase domain	bioC	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_11,Methyltransf_23
SX3_k127_6612926_7	1297865.APJD01000012_gene1340	3.777e-169	539.0	COG1040@1|root,COG1040@2|Bacteria,1RHAV@1224|Proteobacteria,2TV7G@28211|Alphaproteobacteria,3JW65@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phosphoribosyl transferase domain	comF	-	-	-	-	-	-	-	-	-	-	-	Pribosyltran
SX3_k127_6612926_15	1297865.APJD01000012_gene1339	1.369e-53	192.0	COG0695@1|root,COG0695@2|Bacteria,1N72P@1224|Proteobacteria,2UFM1@28211|Alphaproteobacteria,3K0DT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins	grxC	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0033218,GO:0042277,GO:0043167,GO:0043168,GO:0043295,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0055114,GO:0072341,GO:1900750,GO:1901681	-	ko:K03676	-	-	-	-	ko00000,ko03110	-	-	-	Glutaredoxin
SX3_k127_6612926_3	1297865.APJD01000012_gene1338	6.864e-190	601.0	COG0388@1|root,COG0388@2|Bacteria,1MUUB@1224|Proteobacteria,2TRGZ@28211|Alphaproteobacteria,3JQX4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Carbon-nitrogen hydrolase	MA20_39720	-	-	ko:K11206	-	-	-	-	ko00000,ko01000	-	-	-	CN_hydrolase
SX3_k127_6612926_12	1297865.APJD01000012_gene1337	7.306e-91	312.0	COG5319@1|root,COG5319@2|Bacteria,1MZN2@1224|Proteobacteria,2UBTA@28211|Alphaproteobacteria,3JY8M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1178)	MA20_39715	-	-	-	-	-	-	-	-	-	-	-	DUF1178
SX3_k127_6612926_14	398525.KB900701_gene1216	7.294e-82	275.0	COG2510@1|root,COG2510@2|Bacteria,1RJ4E@1224|Proteobacteria,2U7CK@28211|Alphaproteobacteria,3JYVD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	EamA-like transporter family	-	-	-	ko:K08978	-	-	-	-	ko00000,ko02000	2.A.7.2	-	-	EamA
SX3_k127_6612926_5	1297865.APJD01000012_gene1335	1.038e-179	564.0	COG0697@1|root,COG0697@2|Bacteria,1PHRI@1224|Proteobacteria,2TUAQ@28211|Alphaproteobacteria,3JT9V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	MA20_39710	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_6612926_10	1297865.APJD01000012_gene1334	4.184e-93	307.0	2B4C3@1|root,31X3M@2|Bacteria,1RINY@1224|Proteobacteria,2UB5Q@28211|Alphaproteobacteria,3K6C4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lipocalin-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Lipocalin_5
SX3_k127_6612926_4	1297865.APJD01000012_gene1333	5.101e-185	580.0	COG0583@1|root,COG0583@2|Bacteria,1R49T@1224|Proteobacteria,2U6BN@28211|Alphaproteobacteria,3K0A3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	pecT	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6612926_8	1297865.APJD01000012_gene1332	2.365e-165	521.0	COG2227@1|root,COG2227@2|Bacteria,1MU89@1224|Proteobacteria,2TRIK@28211|Alphaproteobacteria,3JTA8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway	ubiG	-	2.1.1.222,2.1.1.64	ko:K00568	ko00130,ko01100,ko01110,map00130,map01100,map01110	M00117	R04988,R05614,R08769,R08781	RC00003,RC00392,RC01895	ko00000,ko00001,ko00002,ko01000	-	-	-	Methyltransf_11,Methyltransf_23
SX3_k127_6612926_11	1297865.APJD01000012_gene1331	3.797e-92	306.0	COG3428@1|root,COG3428@2|Bacteria,1N9PB@1224|Proteobacteria,2TUD0@28211|Alphaproteobacteria,3JW2D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Bacterial PH domain	-	-	-	-	-	-	-	-	-	-	-	-	bPH_2
SX3_k127_6612926_2	1297865.APJD01000012_gene1330	5.314e-264	814.0	COG0527@1|root,COG0527@2|Bacteria,1MW3H@1224|Proteobacteria,2TRFA@28211|Alphaproteobacteria,3JUKJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the aspartokinase family	lysC	GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006553,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.2.4	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R00480	RC00002,RC00043	ko00000,ko00001,ko00002,ko01000	-	-	-	AA_kinase,ACT,ACT_7
SX3_k127_6612926_16	224911.27354970	1.059e-05	53.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_6612926_0	1230476.C207_06983	0.0	1062.0	COG3605@1|root,COG3605@2|Bacteria,1QTTV@1224|Proteobacteria,2TR3Z@28211|Alphaproteobacteria,3JV6Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Belongs to the PEP-utilizing enzyme family	ptsP	-	2.7.3.9	ko:K08484	ko02060,map02060	-	-	-	ko00000,ko00001,ko01000,ko02000	-	-	-	GAF,GAF_2,PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C
SX3_k127_66155_1	1297865.APJD01000011_gene6619	2.235e-203	632.0	COG2267@1|root,COG2267@2|Bacteria,1QU7K@1224|Proteobacteria,2U0H3@28211|Alphaproteobacteria,3JR1E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	2.7.10.2,3.3.2.9	ko:K01253,ko:K08253	ko00980,ko04976,ko05204,map00980,map04976,map05204	-	R07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443	RC01447,RC01728,RC01764,RC02528	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1
SX3_k127_66155_2	1297865.APJD01000011_gene6618	1.528e-202	632.0	COG1633@1|root,COG1814@1|root,COG1633@2|Bacteria,COG1814@2|Bacteria,1MUET@1224|Proteobacteria,2TQMZ@28211|Alphaproteobacteria,3JR4J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Rubrerythrin	MA20_19235	-	-	-	-	-	-	-	-	-	-	-	Rubrerythrin
SX3_k127_66155_3	1297865.APJD01000011_gene6617	1.435e-185	596.0	2B47E@1|root,31WYM@2|Bacteria,1R5Q0@1224|Proteobacteria,2U37C@28211|Alphaproteobacteria,3JW60@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_66155_0	1297865.APJD01000011_gene6616	0.0	1000.0	COG0154@1|root,COG0154@2|Bacteria,1MW3Z@1224|Proteobacteria,2TS56@28211|Alphaproteobacteria,3JRE9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the amidase family	-	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	Amidase
SX3_k127_66155_4	1297865.APJD01000011_gene6615	5.493e-73	248.0	2EKP5@1|root,33ECX@2|Bacteria,1RD05@1224|Proteobacteria,2U7D5@28211|Alphaproteobacteria,3JYTH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4440)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4440
SX3_k127_6622558_1	1297865.APJD01000006_gene4571	2.198e-192	600.0	COG1181@1|root,COG1181@2|Bacteria,1MUTB@1224|Proteobacteria,2TREC@28211|Alphaproteobacteria,3JR9C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the D-alanine--D-alanine ligase family	ddl	-	6.3.2.4	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	-	R01150	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Dala_Dala_lig_C,Dala_Dala_lig_N
SX3_k127_6622558_4	316055.RPE_2113	5.114e-09	58.0	COG1181@1|root,COG1181@2|Bacteria,1MUTB@1224|Proteobacteria,2TREC@28211|Alphaproteobacteria,3JR9C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the D-alanine--D-alanine ligase family	ddl	-	1.3.1.98,6.3.2.4	ko:K00075,ko:K01921	ko00473,ko00520,ko00550,ko01100,ko01502,map00473,map00520,map00550,map01100,map01502	-	R01150,R03191,R03192	RC00064,RC00141,RC02639	ko00000,ko00001,ko01000,ko01011	-	-	-	Dala_Dala_lig_C,Dala_Dala_lig_N
SX3_k127_6622558_2	1297865.APJD01000006_gene4572	7.498e-191	598.0	COG1589@1|root,COG1589@2|Bacteria,1MY1Q@1224|Proteobacteria,2TQPU@28211|Alphaproteobacteria,3JTKK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Essential cell division protein	ftsQ	-	-	ko:K03589	ko04112,map04112	-	-	-	ko00000,ko00001,ko03036	-	-	-	FtsQ,POTRA_1
SX3_k127_6622558_0	1297865.APJD01000006_gene4573	4.849e-276	854.0	COG0849@1|root,COG0849@2|Bacteria,1MUSR@1224|Proteobacteria,2TQZB@28211|Alphaproteobacteria,3JS4R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring	ftsA	-	-	ko:K03590	ko04112,map04112	-	-	-	ko00000,ko00001,ko03036,ko04812	-	-	-	FtsA,SHS2_FTSA
SX3_k127_6622558_3	1297865.APJD01000006_gene4574	5.462e-37	139.0	COG0206@1|root,COG0206@2|Bacteria,1MV2X@1224|Proteobacteria,2TS1Q@28211|Alphaproteobacteria,3JTNB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity	ftsZ	-	-	ko:K03531	ko04112,map04112	-	-	-	ko00000,ko00001,ko02048,ko03036,ko04812	-	-	-	FtsZ_C,Tubulin
SX3_k127_6632542_2	1297865.APJD01000024_gene422	1.703e-241	745.0	2DKY1@1|root,30U8F@2|Bacteria,1R73S@1224|Proteobacteria,2TYRX@28211|Alphaproteobacteria,3K711@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6632542_0	1297865.APJD01000024_gene421	0.0	1040.0	COG4934@1|root,COG4934@2|Bacteria,1R55X@1224|Proteobacteria,2U0CP@28211|Alphaproteobacteria,3JXAI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Pro-kumamolisin, activation domain	-	-	-	ko:K08677	-	-	-	-	ko00000,ko01002	-	-	-	Peptidase_S8,Pro-kuma_activ
SX3_k127_6632542_3	318996.AXAZ01000101_gene103	1.006e-148	471.0	COG0745@1|root,COG0745@2|Bacteria,1MWVI@1224|Proteobacteria,2TRSP@28211|Alphaproteobacteria,3JQKV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulatory protein, C terminal	ctrA	GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141	-	ko:K02483,ko:K13584	ko02020,ko04112,map02020,map04112	M00512	-	-	ko00000,ko00001,ko00002,ko02022	-	-	-	Response_reg,Trans_reg_C
SX3_k127_6632542_1	1297865.APJD01000024_gene419	2.894e-285	877.0	COG1157@1|root,COG1157@2|Bacteria,1MUH6@1224|Proteobacteria,2TRXU@28211|Alphaproteobacteria,3JT0Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	ATP synthase alpha/beta family, nucleotide-binding domain	fliI	-	3.6.3.14	ko:K02412	ko02040,map02040	-	-	-	ko00000,ko00001,ko01000,ko02035,ko02044	3.A.6.2,3.A.6.3	-	-	ATP-synt_ab,ATP-synt_ab_N
SX3_k127_6632542_5	1297865.APJD01000024_gene418	8.29e-76	256.0	2BAE2@1|root,323UI@2|Bacteria,1N2A8@1224|Proteobacteria,2UCBS@28211|Alphaproteobacteria,3JY1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Flagellar FliJ protein	fliJ	-	-	-	-	-	-	-	-	-	-	-	FliJ
SX3_k127_6632542_4	1297865.APJD01000024_gene417	1.099e-111	361.0	COG1595@1|root,COG1595@2|Bacteria,1N00E@1224|Proteobacteria,2U6J3@28211|Alphaproteobacteria,3JT5X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	sigK	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_6632542_6	1297865.APJD01000024_gene416	2.579e-75	253.0	COG5343@1|root,COG5343@2|Bacteria,1N821@1224|Proteobacteria,2UF3V@28211|Alphaproteobacteria,3JR0Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Anti-sigma-K factor rskA	-	-	-	-	-	-	-	-	-	-	-	-	RskA
SX3_k127_6633689_1	1297865.APJD01000007_gene1747	1.107e-321	983.0	COG1505@1|root,COG1505@2|Bacteria,1NZ7N@1224|Proteobacteria,2TTAX@28211|Alphaproteobacteria,3JVNG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Prolyl oligopeptidase	ppcE	-	3.4.21.26	ko:K01322	ko04614,map04614	-	-	-	ko00000,ko00001,ko01000,ko01002	-	-	-	Peptidase_S9,Peptidase_S9_N
SX3_k127_6633689_2	1297865.APJD01000007_gene1748	4.909e-202	630.0	COG2207@1|root,COG2207@2|Bacteria,1R8CA@1224|Proteobacteria,2U4FI@28211|Alphaproteobacteria,3JWBC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	AraC-binding-like domain	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding_2,HTH_18
SX3_k127_6633689_4	1297865.APJD01000007_gene1749	6.032e-37	139.0	2AN55@1|root,31D2Z@2|Bacteria,1P3WV@1224|Proteobacteria,2UVP5@28211|Alphaproteobacteria,3K4TP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6633689_0	1297865.APJD01000007_gene1750	0.0	1577.0	COG0620@1|root,COG0620@2|Bacteria,1MUI9@1224|Proteobacteria,2TU9X@28211|Alphaproteobacteria,3JSEW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation	metE	-	2.1.1.14	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	M00017	R04405,R09365	RC00035,RC00113,RC01241	ko00000,ko00001,ko00002,ko01000	-	-	-	Meth_synt_1,Meth_synt_2
SX3_k127_6633689_3	1297865.APJD01000007_gene1751	1.14e-100	328.0	COG3313@1|root,COG3313@2|Bacteria,1N66E@1224|Proteobacteria,2U1CQ@28211|Alphaproteobacteria,3JW6K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Fe-S protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1289
SX3_k127_6635626_7	1297865.APJD01000049_gene5504	7.507e-171	539.0	COG3493@1|root,COG3493@2|Bacteria,1NKCA@1224|Proteobacteria,2TUQ0@28211|Alphaproteobacteria,3JXJA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	2-hydroxycarboxylate transporter family	-	-	-	-	-	-	-	-	-	-	-	-	2HCT
SX3_k127_6635626_6	1297865.APJD01000049_gene5503	3.739e-182	571.0	COG0583@1|root,COG0583@2|Bacteria,1MUWX@1224|Proteobacteria,2TU0X@28211|Alphaproteobacteria,3JVPS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6635626_3	1297865.APJD01000049_gene5502	6.832e-253	781.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TQQ7@28211|Alphaproteobacteria,3JR1V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_05130	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_6635626_10	1297865.APJD01000049_gene5501	1.47e-85	288.0	COG1846@1|root,COG1846@2|Bacteria,1N7G0@1224|Proteobacteria,2UA2S@28211|Alphaproteobacteria,3JY2Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_6635626_2	1297865.APJD01000049_gene5500	8.596e-304	932.0	COG0477@1|root,COG0477@2|Bacteria,1R9HD@1224|Proteobacteria,2TQQY@28211|Alphaproteobacteria,3JVFD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_6635626_0	1230476.C207_06090	0.0	1038.0	COG1842@1|root,COG1842@2|Bacteria,1QW5I@1224|Proteobacteria,2TWNE@28211|Alphaproteobacteria,3JSB8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	KT	Domain of unknown function (DUF4139)	-	-	-	-	-	-	-	-	-	-	-	-	DUF4139,DUF4140
SX3_k127_6635626_9	1297865.APJD01000018_gene5625	1.925e-93	306.0	2BUIH@1|root,32PUT@2|Bacteria,1NUP0@1224|Proteobacteria,2URR5@28211|Alphaproteobacteria,3K3SV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6635626_1	1297865.APJD01000018_gene5626	2.539e-307	942.0	COG4222@1|root,COG4222@2|Bacteria,1N0B0@1224|Proteobacteria,2TT18@28211|Alphaproteobacteria,3JTV6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Esterase-like activity of phytase	MA20_03555	-	-	-	-	-	-	-	-	-	-	-	Phytase-like
SX3_k127_6635626_8	1297865.APJD01000018_gene5627	3.395e-161	525.0	COG4559@1|root,COG4559@2|Bacteria,1RD7N@1224|Proteobacteria,2TTTR@28211|Alphaproteobacteria,3JV7V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system	hmuV	-	3.6.3.34	ko:K02013	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.14	-	-	ABC_tran
SX3_k127_6635626_4	1297865.APJD01000018_gene5628	8.113e-208	654.0	COG0609@1|root,COG0609@2|Bacteria,1MV9W@1224|Proteobacteria,2TR9A@28211|Alphaproteobacteria,3JRWV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	hmuU	-	-	ko:K02015	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.14	-	-	FecCD
SX3_k127_6635626_5	1297865.APJD01000018_gene5629	2.853e-190	603.0	COG4558@1|root,COG4558@2|Bacteria,1QTSV@1224|Proteobacteria,2TTU9@28211|Alphaproteobacteria,3JRBR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Periplasmic binding protein	hmuT	-	-	ko:K02016	ko02010,map02010	M00240	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.14	-	-	Peripla_BP_2
SX3_k127_6635626_11	1297865.APJD01000018_gene5630	2.619e-33	130.0	COG4256@1|root,COG4256@2|Bacteria,1NGJH@1224|Proteobacteria,2UJIR@28211|Alphaproteobacteria,3K1RA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Hemin uptake protein hemP	MA20_03590	-	-	-	-	-	-	-	-	-	-	-	hemP
SX3_k127_6639959_5	1297865.APJD01000026_gene2414	4.018e-143	454.0	COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,2TS80@28211|Alphaproteobacteria,3JRBA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function DUF21	tlyC	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03699	-	-	-	-	ko00000,ko02042	-	-	-	CBS,CorC_HlyC,DUF21
SX3_k127_6639959_6	1297865.APJD01000026_gene2413	9.701e-121	398.0	COG0223@1|root,COG0223@2|Bacteria,1Q7FH@1224|Proteobacteria,2TT9S@28211|Alphaproteobacteria,3JTMQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Formyl transferase	MA20_41110	-	2.1.2.9	ko:K00604	ko00670,ko00970,map00670,map00970	-	R03940	RC00026,RC00165	ko00000,ko00001,ko01000	-	-	-	Formyl_trans_N
SX3_k127_6639959_8	1230476.C207_01525	2.346e-94	314.0	2C2M3@1|root,316DE@2|Bacteria,1NJKQ@1224|Proteobacteria,2U28W@28211|Alphaproteobacteria,3JWHZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6639959_9	1297865.APJD01000026_gene2411	8.479e-83	275.0	COG0251@1|root,COG0251@2|Bacteria,1RHSP@1224|Proteobacteria,2U5IT@28211|Alphaproteobacteria,3JY85@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Endoribonuclease L-PSP	MA20_41120	-	-	-	-	-	-	-	-	-	-	-	Ribonuc_L-PSP
SX3_k127_6639959_3	1297865.APJD01000026_gene2410	5.547e-172	542.0	COG0697@1|root,COG0697@2|Bacteria,1MV7Y@1224|Proteobacteria,2TUVM@28211|Alphaproteobacteria,3JV2F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_6639959_10	1297865.APJD01000026_gene2409	1.086e-43	159.0	COG3514@1|root,COG3514@2|Bacteria,1MZPR@1224|Proteobacteria,2UCYI@28211|Alphaproteobacteria,3K08A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	BrnA antitoxin of type II toxin-antitoxin system	-	-	-	-	-	-	-	-	-	-	-	-	BrnA_antitoxin
SX3_k127_6639959_2	1230476.C207_01520	5.755e-198	619.0	COG0031@1|root,COG0031@2|Bacteria,1MUBE@1224|Proteobacteria,2TS33@28211|Alphaproteobacteria,3JQMM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the cysteine synthase cystathionine beta- synthase family	cysK	-	2.5.1.47	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	M00021	R00897,R03601,R04859	RC00020,RC02814,RC02821	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP
SX3_k127_6639959_11	1297865.APJD01000026_gene2407	1.409e-41	153.0	29U58@1|root,30FEV@2|Bacteria,1NJV0@1224|Proteobacteria,2UK2Z@28211|Alphaproteobacteria,3K1QT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_41175	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6639959_0	1297865.APJD01000026_gene2406	3.358e-250	773.0	COG0343@1|root,COG0343@2|Bacteria,1MUCA@1224|Proteobacteria,2TR87@28211|Alphaproteobacteria,3JRZH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)	tgt	-	2.4.2.29	ko:K00773	-	-	R03789,R10209	RC00063	ko00000,ko01000,ko03016	-	-	-	TGT
SX3_k127_6639959_1	1297865.APJD01000026_gene2405	5.991e-243	752.0	COG1752@1|root,COG1752@2|Bacteria,1NT1Q@1224|Proteobacteria,2TRM3@28211|Alphaproteobacteria,3JRE2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Patatin-like phospholipase	MA20_41185	-	-	-	-	-	-	-	-	-	-	-	Patatin
SX3_k127_6639959_4	1297865.APJD01000026_gene2404	1.71e-145	463.0	COG1309@1|root,COG1309@2|Bacteria,1QTG5@1224|Proteobacteria,2U294@28211|Alphaproteobacteria,3JS56@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_41190	-	-	-	-	-	-	-	-	-	-	-	TetR_C_7,TetR_N
SX3_k127_6639959_7	1230476.C207_01515	3.464e-112	365.0	COG3212@1|root,COG3212@2|Bacteria,1R5HE@1224|Proteobacteria,2U2SB@28211|Alphaproteobacteria,3JU3I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Peptidase propeptide and YPEB domain	-	-	-	-	-	-	-	-	-	-	-	-	PepSY
SX3_k127_6639959_12	1297865.APJD01000026_gene2402	7.029e-25	104.0	COG0136@1|root,COG0136@2|Bacteria,1MUHG@1224|Proteobacteria,2TSRD@28211|Alphaproteobacteria,3JV4V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate	asd	-	1.2.1.11	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R02291	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Semialdhyde_dh,Semialdhyde_dhC
SX3_k127_6645304_6	1230476.C207_06440	6.021e-17	93.0	COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JVPA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,GAF_2,GGDEF
SX3_k127_6645304_1	1297865.APJD01000009_gene2946	3.494e-229	711.0	COG2055@1|root,COG2055@2|Bacteria,1MWQY@1224|Proteobacteria,2TR37@28211|Alphaproteobacteria,3JVES@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Malate/L-lactate dehydrogenase	MA20_06110	-	1.1.1.350	ko:K00073,ko:K13574	ko00230,ko01120,map00230,map01120	-	R02935,R02936	RC00169	ko00000,ko00001,ko01000	-	-	-	Ldh_2
SX3_k127_6645304_0	1297865.APJD01000009_gene2947	4.047e-304	932.0	COG2141@1|root,COG2141@2|Bacteria,1MUVN@1224|Proteobacteria,2TR26@28211|Alphaproteobacteria,3JSBW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Luciferase-like monooxygenase	MA20_06115	-	-	-	-	-	-	-	-	-	-	-	Bac_luciferase
SX3_k127_6645304_3	1297865.APJD01000009_gene2948	1.305e-176	553.0	COG0179@1|root,COG0179@2|Bacteria,1NM05@1224|Proteobacteria,2U0IB@28211|Alphaproteobacteria,3JRKT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Domain of unknown function (DUF2437)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2437,FAA_hydrolase
SX3_k127_6645304_2	1297865.APJD01000009_gene2949	1.179e-190	596.0	COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2TUNU@28211|Alphaproteobacteria,3JV4C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	LysR substrate binding domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_6645304_5	1297865.APJD01000009_gene2950	1.356e-62	219.0	2DPWN@1|root,333PM@2|Bacteria,1RI1Z@1224|Proteobacteria,2U9SI@28211|Alphaproteobacteria,3JZH0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	MIase
SX3_k127_6645304_4	1297865.APJD01000009_gene2951	4.717e-96	316.0	2E8II@1|root,332WK@2|Bacteria,1RAN8@1224|Proteobacteria,2U5M9@28211|Alphaproteobacteria,3JY9P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6683141_5	1297865.APJD01000020_gene218	1.056e-25	106.0	COG0640@1|root,COG0640@2|Bacteria,1N7VH@1224|Proteobacteria,2U72C@28211|Alphaproteobacteria,3JYR9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Arsenical Resistance Operon Repressor	MA20_27670	-	-	-	-	-	-	-	-	-	-	-	HTH_20,HTH_5
SX3_k127_6683141_2	1297865.APJD01000020_gene219	4.239e-301	923.0	COG0372@1|root,COG0372@2|Bacteria,1MUKX@1224|Proteobacteria,2TS63@28211|Alphaproteobacteria,3JRZW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the citrate synthase family	gltA	-	2.3.3.1	ko:K01647	ko00020,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map01100,map01110,map01120,map01130,map01200,map01210,map01230	M00009,M00010,M00012,M00740	R00351	RC00004,RC00067	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Citrate_synt
SX3_k127_6683141_1	1230476.C207_00900	7.521e-317	975.0	COG0008@1|root,COG0008@2|Bacteria,1MUCR@1224|Proteobacteria,2TRSU@28211|Alphaproteobacteria,3JS6J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)	gltX	-	6.1.1.17	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	M00121,M00359,M00360	R05578	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016	-	-	-	tRNA-synt_1c
SX3_k127_6683141_0	1297865.APJD01000020_gene221	0.0	1165.0	COG0008@1|root,COG0008@2|Bacteria,1MUC8@1224|Proteobacteria,2TRKX@28211|Alphaproteobacteria,3JUGQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	glutaminyl-tRNA synthetase	glnS	-	6.1.1.18	ko:K01886	ko00970,ko01100,map00970,map01100	M00359,M00360	R03652	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	tRNA-synt_1c,tRNA-synt_1c_C
SX3_k127_6683141_4	1297865.APJD01000020_gene222	1.862e-81	271.0	COG4319@1|root,COG4319@2|Bacteria,1RE87@1224|Proteobacteria,2U7SI@28211|Alphaproteobacteria,3JZ4N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF4440,SnoaL_3
SX3_k127_6683141_3	1297865.APJD01000020_gene223	1.751e-84	281.0	COG0658@1|root,COG0658@2|Bacteria,1MUKF@1224|Proteobacteria,2TRD5@28211|Alphaproteobacteria,3JRIG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Competence protein	-	-	-	ko:K02238	-	M00429	-	-	ko00000,ko00002,ko02044	3.A.11.1,3.A.11.2	-	-	Competence,DUF4131
SX3_k127_6683427_2	1297865.APJD01000005_gene3615	1.165e-173	544.0	COG0683@1|root,COG0683@2|Bacteria,1R6HB@1224|Proteobacteria,2U0JE@28211|Alphaproteobacteria,3JXPQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein domain	-	-	-	-	-	-	-	-	-	-	-	-	Peripla_BP_6
SX3_k127_6683427_4	68219.JNXI01000076_gene2209	3.552e-143	459.0	COG0559@1|root,COG0559@2|Bacteria,2GKAR@201174|Actinobacteria	201174|Actinobacteria	E	Belongs to the binding-protein-dependent transport system permease family	-	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_6683427_1	1297865.APJD01000005_gene3617	2.499e-185	581.0	COG4177@1|root,COG4177@2|Bacteria,1N76B@1224|Proteobacteria,2U1GV@28211|Alphaproteobacteria,3JRXI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_6683427_6	75379.Tint_0917	7.543e-69	242.0	COG0411@1|root,COG0411@2|Bacteria,1R6TG@1224|Proteobacteria,2W1KV@28216|Betaproteobacteria,1KPEP@119065|unclassified Burkholderiales	28216|Betaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K01995	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_6683427_3	1297865.APJD01000005_gene3619	4.782e-149	472.0	COG0410@1|root,COG0410@2|Bacteria,1R89S@1224|Proteobacteria,2U393@28211|Alphaproteobacteria,3JX6F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ABC transporter	-	-	-	-	-	-	-	-	-	-	-	-	ABC_tran
SX3_k127_6683427_0	1297865.APJD01000005_gene3620	1.376e-281	867.0	COG0154@1|root,COG0154@2|Bacteria,1MU51@1224|Proteobacteria,2TSYS@28211|Alphaproteobacteria,3JQW9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Amidase	MA20_16295	-	6.3.5.6,6.3.5.7	ko:K02433	ko00970,ko01100,map00970,map01100	-	R03905,R04212	RC00010	ko00000,ko00001,ko01000,ko03029	-	-	-	Amidase
SX3_k127_6683427_5	316058.RPB_3585	1.006e-108	356.0	COG0179@1|root,COG0179@2|Bacteria,1R4GE@1224|Proteobacteria,2TTZ5@28211|Alphaproteobacteria,3JUK2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Protein of unknown function (DUF2848)	MA20_16290	-	-	-	-	-	-	-	-	-	-	-	DUF2848
SX3_k127_6698359_3	1297865.APJD01000001_gene5871	6.309e-127	406.0	COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,2TRA0@28211|Alphaproteobacteria,3JRYB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Carboxyl transferase domain	mccB	-	6.4.1.4	ko:K01969	ko00280,ko01100,map00280,map01100	M00036	R04138	RC00367,RC00942	ko00000,ko00001,ko00002,ko01000	-	-	-	Carboxyl_trans
SX3_k127_6698359_0	1297865.APJD01000001_gene5870	0.0	1329.0	COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,2TRC2@28211|Alphaproteobacteria,3JRKB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Biotin carboxylase C-terminal domain	mccA	-	6.4.1.3,6.4.1.4	ko:K01965,ko:K01968	ko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200	M00036,M00373,M00741	R01859,R04138	RC00097,RC00367,RC00609,RC00942	ko00000,ko00001,ko00002,ko01000	-	-	-	Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2
SX3_k127_6698359_2	1297865.APJD01000001_gene5869	2.491e-187	596.0	COG0119@1|root,COG0119@2|Bacteria,1MUMX@1224|Proteobacteria,2TT1R@28211|Alphaproteobacteria,3JURK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	HMGL-like	hmgL	-	4.1.3.4	ko:K01640	ko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146	M00036,M00088	R01360,R08090	RC00502,RC00503,RC01118,RC01946	ko00000,ko00001,ko00002,ko01000	-	-	-	HMGL-like
SX3_k127_6698359_4	1297865.APJD01000001_gene5868	4.192e-123	395.0	2AGPC@1|root,316WX@2|Bacteria,1PY4F@1224|Proteobacteria,2UWU6@28211|Alphaproteobacteria,3K5P1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PEP-CTERM motif	-	-	-	-	-	-	-	-	-	-	-	-	VPEP
SX3_k127_6698359_1	1297865.APJD01000001_gene5866	0.0	1000.0	COG2199@1|root,COG3706@2|Bacteria,1MZV7@1224|Proteobacteria,2TZSN@28211|Alphaproteobacteria,3JUPP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	PAS fold	-	-	-	-	-	-	-	-	-	-	-	-	GGDEF,PAS_4,PAS_7,PAS_9
SX3_k127_6698359_6	172088.AUGA01000029_gene1904	7.44e-60	208.0	COG0129@1|root,COG0129@2|Bacteria,1MUTQ@1224|Proteobacteria,2TRTQ@28211|Alphaproteobacteria,3JTGH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the IlvD Edd family	ilvD	GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836	4.2.1.9	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	M00019,M00570	R01209,R04441,R05070	RC00468,RC01714	ko00000,ko00001,ko00002,ko01000	-	-	-	ILVD_EDD
SX3_k127_6704070_2	1297865.APJD01000020_gene293	8.071e-105	346.0	COG2373@1|root,COG2373@2|Bacteria,1MV7J@1224|Proteobacteria,2TSAE@28211|Alphaproteobacteria,3JTU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Alpha-2-Macroglobulin	MA20_30110	-	-	ko:K06894	-	-	-	-	ko00000	-	-	-	A2M,A2M_N,A2M_N_2,MG1,PAN_1,Thiol-ester_cl
SX3_k127_6704070_3	1297865.APJD01000020_gene291	4.225e-95	315.0	2BTXT@1|root,32P5Z@2|Bacteria,1RETA@1224|Proteobacteria,2U7HW@28211|Alphaproteobacteria,3JYZY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF992)	-	-	-	-	-	-	-	-	-	-	-	-	DUF992
SX3_k127_6704070_5	1297865.APJD01000020_gene290	5.678e-56	197.0	2A6ZV@1|root,30VV0@2|Bacteria,1N1YQ@1224|Proteobacteria,2UBYK@28211|Alphaproteobacteria,3K0JA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6704070_6	1297865.APJD01000020_gene289	8.991e-55	193.0	29BDM@1|root,2ZYBZ@2|Bacteria,1RJQI@1224|Proteobacteria,2U974@28211|Alphaproteobacteria,3JZTE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_41095	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6704070_1	1297865.APJD01000020_gene288	1.249e-119	389.0	COG0800@1|root,COG0800@2|Bacteria,1RD0T@1224|Proteobacteria,2U7AQ@28211|Alphaproteobacteria,3JTRJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	KDPG and KHG aldolase	dgoA	GO:0003674,GO:0003824,GO:0005975,GO:0006082,GO:0008150,GO:0008152,GO:0008674,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0019520,GO:0019583,GO:0019584,GO:0019752,GO:0032787,GO:0034192,GO:0034194,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0046176,GO:0046395,GO:0071704,GO:0072329,GO:1901575	4.1.2.21	ko:K01631	ko00052,ko01100,map00052,map01100	M00552	R01064	RC00307,RC00435	ko00000,ko00001,ko00002,ko01000	-	-	-	Aldolase
SX3_k127_6704070_0	1297865.APJD01000020_gene287	5.239e-187	586.0	COG3734@1|root,COG3734@2|Bacteria,1MWGX@1224|Proteobacteria,2TTG8@28211|Alphaproteobacteria,3JS3W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	2-keto-3-deoxy-galactonokinase	dgoK	GO:0003674,GO:0003824,GO:0005975,GO:0006082,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008671,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019520,GO:0019583,GO:0019584,GO:0019752,GO:0032787,GO:0034192,GO:0034194,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0046176,GO:0046395,GO:0046835,GO:0071704,GO:0072329,GO:1901575	2.7.1.58	ko:K00883	ko00052,ko01100,map00052,map01100	M00552	R03387	RC00002,RC00017	ko00000,ko00001,ko00002,ko01000	-	-	-	DGOK
SX3_k127_6704070_8	1230476.C207_00961	3.293e-37	141.0	2A75K@1|root,30W1F@2|Bacteria,1N242@1224|Proteobacteria,2UE2T@28211|Alphaproteobacteria,3K0TF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6704070_9	1297865.APJD01000020_gene285	7.943e-32	126.0	29FQ6@1|root,302MT@2|Bacteria,1NDMI@1224|Proteobacteria,2UG79@28211|Alphaproteobacteria,3K0XR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6704070_7	1297865.APJD01000020_gene284	1.444e-44	166.0	2ACCF@1|root,311XM@2|Bacteria,1N2IF@1224|Proteobacteria,2UEVZ@28211|Alphaproteobacteria,3K0AB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6704070_10	1297865.APJD01000020_gene283	2.161e-29	120.0	299YZ@1|root,2ZX0P@2|Bacteria,1N9DG@1224|Proteobacteria,2UFFS@28211|Alphaproteobacteria,3K133@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6705399_7	1297865.APJD01000003_gene6395	1.614e-101	331.0	2E3E3@1|root,32YD6@2|Bacteria,1N9CW@1224|Proteobacteria,2UH8F@28211|Alphaproteobacteria,3JTZH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6705399_3	1297865.APJD01000003_gene6394	4.12e-135	431.0	COG3917@1|root,COG3917@2|Bacteria,1MWB9@1224|Proteobacteria,2U07P@28211|Alphaproteobacteria,3JUIQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	2-hydroxychromene-2-carboxylate isomerase	-	-	-	-	-	-	-	-	-	-	-	-	DSBA
SX3_k127_6705399_9	1245469.S58_07670	2.729e-42	158.0	COG5336@1|root,COG5336@2|Bacteria,1NHIS@1224|Proteobacteria,2UFJJ@28211|Alphaproteobacteria,3JZII@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex	atpI	-	-	ko:K02116	-	-	-	-	ko00000,ko00194	3.A.2.1	-	-	ATPase_gene1
SX3_k127_6705399_2	1297865.APJD01000003_gene6392	1.449e-148	472.0	COG0356@1|root,COG0356@2|Bacteria,1MV87@1224|Proteobacteria,2TRNV@28211|Alphaproteobacteria,3JTDK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	it plays a direct role in the translocation of protons across the membrane	atpB	-	-	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194,ko03110	3.A.2.1	-	-	ATP-synt_A
SX3_k127_6705399_10	172088.AUGA01000007_gene8477	6.88e-37	141.0	COG0636@1|root,COG0636@2|Bacteria,1MZBU@1224|Proteobacteria,2UFPN@28211|Alphaproteobacteria,3K02Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation	atpE	-	-	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_C
SX3_k127_6705399_6	1297865.APJD01000003_gene6390	2.201e-104	340.0	COG0711@1|root,COG0711@2|Bacteria,1MZGU@1224|Proteobacteria,2UBVW@28211|Alphaproteobacteria,3JR6Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity)	atpF2	-	-	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_B
SX3_k127_6705399_8	1297865.APJD01000003_gene6389	2.636e-85	284.0	COG0711@1|root,COG0711@2|Bacteria,1N0P5@1224|Proteobacteria,2U5DD@28211|Alphaproteobacteria,3JY46@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation	atpF	-	-	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	M00157	-	-	ko00000,ko00001,ko00002,ko00194	3.A.2.1	-	-	ATP-synt_B
SX3_k127_6705399_4	1297865.APJD01000003_gene6388	9.367e-132	421.0	2CB63@1|root,3349C@2|Bacteria,1RKRV@1224|Proteobacteria,2U0FI@28211|Alphaproteobacteria,3JVTI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6705399_5	1230476.C207_02732	1.946e-126	407.0	COG1670@1|root,COG1670@2|Bacteria,1MVG4@1224|Proteobacteria,2TUIK@28211|Alphaproteobacteria,3JTVG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Acetyltransferase (GNAT) domain	rimJ	-	2.3.1.128	ko:K03790	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Acetyltransf_3
SX3_k127_6705399_1	1297865.APJD01000003_gene6386	2.111e-274	846.0	COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,2TR39@28211|Alphaproteobacteria,3JR41@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Belongs to the peptidase M16 family	mpp	-	-	-	-	-	-	-	-	-	-	-	Peptidase_M16,Peptidase_M16_C
SX3_k127_6705399_0	1297865.APJD01000003_gene6385	8.291e-299	918.0	COG0498@1|root,COG0498@2|Bacteria,1MUWQ@1224|Proteobacteria,2TT0D@28211|Alphaproteobacteria,3JTA4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Threonine synthase N terminus	thrC	GO:0003674,GO:0003824,GO:0004795,GO:0006082,GO:0006520,GO:0006566,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016311,GO:0016829,GO:0016835,GO:0016838,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.2.3.1	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	M00018	R01466,R05086	RC00017,RC00526	ko00000,ko00001,ko00002,ko01000	-	-	-	PALP,Thr_synth_N
SX3_k127_6715684_11	1297865.APJD01000010_gene5015	9.167e-44	165.0	2CH5S@1|root,2ZUHH@2|Bacteria,1RKQR@1224|Proteobacteria,2TSDT@28211|Alphaproteobacteria,3JTRA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6715684_7	398525.KB900701_gene4487	2.405e-123	396.0	COG4649@1|root,COG4649@2|Bacteria,1P2GI@1224|Proteobacteria,2UCFZ@28211|Alphaproteobacteria,3JS1T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tetratricopeptide repeat-like domain	-	-	-	-	-	-	-	-	-	-	-	-	TPR_21
SX3_k127_6715684_1	1297865.APJD01000010_gene5013	0.0	1068.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JUFM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_27905	-	-	-	-	-	-	-	-	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_6715684_4	1297865.APJD01000010_gene5012	8.831e-172	542.0	COG0413@1|root,COG0413@2|Bacteria,1MU3B@1224|Proteobacteria,2TQT1@28211|Alphaproteobacteria,3JTTZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate	panB	-	2.1.2.11	ko:K00606	ko00770,ko01100,ko01110,map00770,map01100,map01110	M00119	R01226	RC00022,RC00200	ko00000,ko00001,ko00002,ko01000	-	-	-	Pantoate_transf
SX3_k127_6715684_8	1297865.APJD01000010_gene5011	3.041e-117	379.0	COG4094@1|root,COG4094@2|Bacteria,1RDHB@1224|Proteobacteria,2TQWY@28211|Alphaproteobacteria,3JTFH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NnrU protein	nnrU	-	-	-	-	-	-	-	-	-	-	-	NnrU
SX3_k127_6715684_5	1297865.APJD01000010_gene5010	2.104e-138	442.0	2E5B6@1|root,3303A@2|Bacteria,1RDY2@1224|Proteobacteria,2TVMZ@28211|Alphaproteobacteria,3JU5S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6715684_0	1230476.C207_05480	0.0	1106.0	COG4108@1|root,COG4108@2|Bacteria,1MU7X@1224|Proteobacteria,2TRP5@28211|Alphaproteobacteria,3JRKD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP	prfC	-	-	ko:K02837	-	-	-	-	ko00000,ko03012	-	-	-	GTP_EFTU,GTP_EFTU_D2,RF3_C
SX3_k127_6715684_10	1297865.APJD01000010_gene5008	4.731e-54	192.0	COG2076@1|root,COG2076@2|Bacteria,1MZ6P@1224|Proteobacteria,2UBR4@28211|Alphaproteobacteria,3JZDI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	PFAM small multidrug resistance protein	sugE	-	-	ko:K11741	-	-	-	-	ko00000,ko02000	2.A.7.1	-	-	Multi_Drug_Res
SX3_k127_6715684_12	224911.27352803	6.868e-07	51.0	COG1173@1|root,COG1173@2|Bacteria,1MWP1@1224|Proteobacteria,2TSUG@28211|Alphaproteobacteria,3JR90@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	Binding-protein-dependent transport system inner membrane component	MA20_13270	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_6715684_2	1297865.APJD01000010_gene5007	1.578e-202	633.0	COG0306@1|root,COG0306@2|Bacteria,1MVXK@1224|Proteobacteria,2TSYI@28211|Alphaproteobacteria,3JS65@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Phosphate transporter family	pit	-	-	ko:K03306	-	-	-	-	ko00000	2.A.20	-	-	PHO4
SX3_k127_6715684_6	1297865.APJD01000010_gene5006	8.143e-134	426.0	COG1392@1|root,COG1392@2|Bacteria,1R4SP@1224|Proteobacteria,2U5E0@28211|Alphaproteobacteria,3JRFS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Protein of unknown function DUF47	MA20_27875	-	-	ko:K07220	-	-	-	-	ko00000	-	-	-	NUDIX,PhoU_div
SX3_k127_6715684_3	1297865.APJD01000010_gene5005	1.629e-200	625.0	COG4177@1|root,COG4177@2|Bacteria,1MWP3@1224|Proteobacteria,2TR99@28211|Alphaproteobacteria,3JURB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_27870	-	-	ko:K01998	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_6715684_9	172088.AUGA01000045_gene6814	7.36e-96	314.0	COG0559@1|root,COG0559@2|Bacteria,1MY1E@1224|Proteobacteria,2TSIQ@28211|Alphaproteobacteria,3JTUY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the binding-protein-dependent transport system permease family	MA20_27865	-	-	ko:K01997	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	BPD_transp_2
SX3_k127_6719531_2	1297865.APJD01000044_gene6893	8.397e-216	670.0	COG0399@1|root,COG0399@2|Bacteria,1MUPN@1224|Proteobacteria,2TRIQ@28211|Alphaproteobacteria,3JU8X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the DegT DnrJ EryC1 family	-	-	-	-	-	-	-	-	-	-	-	-	DegT_DnrJ_EryC1
SX3_k127_6719531_5	1297865.APJD01000044_gene6894	1.064e-114	370.0	COG0241@1|root,COG0241@2|Bacteria,1RDGR@1224|Proteobacteria,2TRW1@28211|Alphaproteobacteria,3JUVW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	D,D-heptose 1,7-bisphosphate phosphatase	-	-	3.1.3.82,3.1.3.83	ko:K03273	ko00540,ko01100,map00540,map01100	M00064	R05647,R09771	RC00017	ko00000,ko00001,ko00002,ko01000,ko01005	-	-	-	HAD_2,Hydrolase_6,Hydrolase_like,NTP_transferase
SX3_k127_6719531_0	1297865.APJD01000044_gene6895	5.137e-260	805.0	COG1541@1|root,COG1541@2|Bacteria,1MV1W@1224|Proteobacteria,2TQN5@28211|Alphaproteobacteria,3JSCQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	AMP-binding enzyme	MA20_42595	-	6.2.1.30	ko:K01912	ko00360,ko01120,ko05111,map00360,map01120,map05111	-	R02539	RC00004,RC00014	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C_2
SX3_k127_6719531_1	1297865.APJD01000044_gene6896	5.481e-257	796.0	COG2942@1|root,COG2942@2|Bacteria,1PE13@1224|Proteobacteria,2U4P6@28211|Alphaproteobacteria,3JR7V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	MA20_42590	-	5.1.3.8,5.3.1.8	ko:K01787,ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	M00114	R01207,R01819	RC00290,RC00376	ko00000,ko00001,ko00002,ko01000	-	-	-	GlcNAc_2-epim
SX3_k127_6719531_3	1297865.APJD01000044_gene6897	2.269e-171	539.0	COG0410@1|root,COG0410@2|Bacteria,1MVVC@1224|Proteobacteria,2TT8N@28211|Alphaproteobacteria,3JSX4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	MA20_42585	-	-	ko:K01996	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	ABC_tran
SX3_k127_6719531_4	1297865.APJD01000044_gene6898	1.012e-157	497.0	COG0683@1|root,COG0683@2|Bacteria,1MV5T@1224|Proteobacteria,2V9EY@28211|Alphaproteobacteria,3JR88@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	MA20_42580	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_6729904_1	323097.Nham_4531	3.706e-175	556.0	COG0845@1|root,COG0845@2|Bacteria,1MX8W@1224|Proteobacteria,2TRPM@28211|Alphaproteobacteria,3JQVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K15727	-	-	-	-	ko00000,ko02000	8.A.1.2.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_6729904_0	323097.Nham_4530	2.72e-246	764.0	COG1538@1|root,COG1538@2|Bacteria,1NEZC@1224|Proteobacteria,2TTFK@28211|Alphaproteobacteria,3JQV0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	MU	Outer membrane efflux protein	-	-	-	ko:K15725	-	-	-	-	ko00000,ko02000	1.B.17.2.2	-	-	OEP
SX3_k127_6729904_3	319003.Bra1253DRAFT_07799	1.3e-21	101.0	2C40Q@1|root,2ZYAZ@2|Bacteria,1RJM7@1224|Proteobacteria,2UA26@28211|Alphaproteobacteria,3JZYH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_6729904_2	666684.AfiDRAFT_0882	1.766e-127	409.0	COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,2TSE3@28211|Alphaproteobacteria,3JS0H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Cation efflux family	-	-	-	-	-	-	-	-	-	-	-	-	Cation_efflux
SX3_k127_6729958_2	1297865.APJD01000007_gene1922	1.102e-46	168.0	COG3153@1|root,COG3153@2|Bacteria,1RD0C@1224|Proteobacteria,2U7AS@28211|Alphaproteobacteria,3JTBQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_9
SX3_k127_6729958_1	1230476.C207_00325	7.107e-68	231.0	2CJ4Q@1|root,32S97@2|Bacteria,1N0B9@1224|Proteobacteria,2U72B@28211|Alphaproteobacteria,3K0TV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	EthD domain	-	-	-	-	-	-	-	-	-	-	-	-	EthD
SX3_k127_6729958_0	1297865.APJD01000007_gene1924	0.0	1118.0	COG1629@1|root,COG4771@2|Bacteria,1QTS8@1224|Proteobacteria,2TW3Y@28211|Alphaproteobacteria,3K6QS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_691973_5	1297865.APJD01000014_gene806	7.904e-251	774.0	COG2202@1|root,COG5001@1|root,COG2202@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JQV4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	MA20_31570	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,MHYT,PAS_4,PAS_7,PAS_8
SX3_k127_691973_10	398525.KB900701_gene5840	2.45e-121	390.0	COG0778@1|root,COG0778@2|Bacteria,1PKUV@1224|Proteobacteria,2U5MZ@28211|Alphaproteobacteria,3JRWH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Nitroreductase family	MA20_31560	-	-	-	-	-	-	-	-	-	-	-	Nitroreductase
SX3_k127_691973_1	1230476.C207_01776	0.0	1387.0	COG0441@1|root,COG0441@2|Bacteria,1MUP2@1224|Proteobacteria,2TQWI@28211|Alphaproteobacteria,3JRSX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)	thrS	-	6.1.1.3	ko:K01868	ko00970,map00970	M00359,M00360	R03663	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,TGS,tRNA-synt_2b,tRNA_SAD
SX3_k127_691973_3	1297865.APJD01000014_gene803	1.516e-268	831.0	COG3904@1|root,COG3904@2|Bacteria,1QG8N@1224|Proteobacteria,2U1HA@28211|Alphaproteobacteria,3JUJS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PeriplasmiC protein	-	-	-	-	-	-	-	-	-	-	-	-	CLP_protease
SX3_k127_691973_6	1297865.APJD01000014_gene802	2.87e-227	707.0	COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,2TSPI@28211|Alphaproteobacteria,3JUG5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	ko:K19577	-	-	-	-	ko00000,ko02000	2.A.1.2.65	-	-	MFS_1
SX3_k127_691973_12	1297865.APJD01000014_gene801	3.732e-63	218.0	2ER0Q@1|root,33IK9@2|Bacteria,1MYRX@1224|Proteobacteria,2U8DE@28211|Alphaproteobacteria,3JZ7C@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	T3SS negative regulator,GrlR	-	-	-	-	-	-	-	-	-	-	-	-	GrlR
SX3_k127_691973_7	1297865.APJD01000014_gene800	4.835e-226	711.0	COG1262@1|root,COG1262@2|Bacteria,1NQ5K@1224|Proteobacteria,2U2VJ@28211|Alphaproteobacteria,3JTPW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Sulfatase-modifying factor enzyme 1	-	-	-	-	-	-	-	-	-	-	-	-	FGE-sulfatase,Guanylate_cyc
SX3_k127_691973_2	1297865.APJD01000014_gene799	4.25e-322	992.0	2A7N1@1|root,30WK1@2|Bacteria,1REA5@1224|Proteobacteria,2U8MY@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	TIR domain	-	-	-	-	-	-	-	-	-	-	-	-	TIR_2
SX3_k127_691973_0	1297865.APJD01000014_gene798	0.0	2639.0	COG1674@1|root,COG2319@1|root,COG1674@2|Bacteria,COG2319@2|Bacteria,1MWJA@1224|Proteobacteria,2U3AU@28211|Alphaproteobacteria	28211|Alphaproteobacteria	D	WD domain, G-beta repeat	-	-	-	-	-	-	-	-	-	-	-	-	WD40
SX3_k127_691973_8	1297865.APJD01000014_gene797	1.3e-216	675.0	COG0726@1|root,COG0726@2|Bacteria,1R8KN@1224|Proteobacteria,2TSM2@28211|Alphaproteobacteria	28211|Alphaproteobacteria	G	DeAcetylase	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_691973_4	1297865.APJD01000014_gene796	2.491e-255	788.0	28J0S@1|root,2Z8XX@2|Bacteria,1P9IP@1224|Proteobacteria,2TSZQ@28211|Alphaproteobacteria,3JVZV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_691973_13	1297865.APJD01000014_gene795	6.498e-29	120.0	2AEWI@1|root,314U6@2|Bacteria,1NA2W@1224|Proteobacteria,2UGF0@28211|Alphaproteobacteria,3K107@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_691973_11	1297865.APJD01000014_gene794	1.327e-66	228.0	COG0759@1|root,COG0759@2|Bacteria,1N6U4@1224|Proteobacteria,2UFKH@28211|Alphaproteobacteria,3JZFD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Could be involved in insertion of integral membrane proteins into the membrane	yidD	-	-	ko:K08998	-	-	-	-	ko00000	-	-	-	Haemolytic
SX3_k127_691973_9	1230476.C207_01770	1.248e-170	543.0	COG3904@1|root,COG3904@2|Bacteria,1QG8N@1224|Proteobacteria,2U0GJ@28211|Alphaproteobacteria,3JR2S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	periplasmic protein	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_691973_14	1297865.APJD01000014_gene792	8.096e-16	76.0	COG0822@1|root,COG0822@2|Bacteria,1RDGB@1224|Proteobacteria,2U74A@28211|Alphaproteobacteria,3JRJR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NifU-like N terminal domain	nifU	-	-	-	-	-	-	-	-	-	-	-	NifU_N
SX3_k127_696055_0	1297865.APJD01000004_gene5286	0.0	1118.0	COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,3JR5T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Belongs to the GMC oxidoreductase family	MA20_19170	-	-	-	-	-	-	-	-	-	-	-	GMC_oxred_C,GMC_oxred_N
SX3_k127_696055_9	224911.27354970	1.427e-05	48.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_696055_7	1297865.APJD01000004_gene5287	2.479e-96	316.0	COG1286@1|root,COG1286@2|Bacteria,1R47T@1224|Proteobacteria,2U0T2@28211|Alphaproteobacteria,3JTVE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Colicin V production protein	-	-	-	ko:K03558	-	-	-	-	ko00000	-	-	-	Colicin_V
SX3_k127_696055_4	1297865.APJD01000004_gene5288	9.244e-166	527.0	COG1028@1|root,COG1028@2|Bacteria,1MWJI@1224|Proteobacteria,2TRNJ@28211|Alphaproteobacteria,3JS4Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	MA20_19195	-	1.1.1.100	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	M00083,M00572	R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671	RC00029,RC00117	ko00000,ko00001,ko00002,ko01000,ko01004	-	-	-	adh_short_C2
SX3_k127_696055_2	1297865.APJD01000004_gene5289	3.32e-208	659.0	COG0604@1|root,COG0604@2|Bacteria,1MXRX@1224|Proteobacteria,2TRSQ@28211|Alphaproteobacteria,3JSKI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	-	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N,ADH_zinc_N_2
SX3_k127_696055_3	1297865.APJD01000004_gene5290	6.329e-194	605.0	COG0491@1|root,COG0491@2|Bacteria,1N22F@1224|Proteobacteria,2U2V5@28211|Alphaproteobacteria,3JSGW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Metallo-beta-lactamase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Lactamase_B
SX3_k127_696055_8	1297865.APJD01000004_gene5291	5.116e-66	247.0	2A8JQ@1|root,30XN1@2|Bacteria,1RGNE@1224|Proteobacteria,2U8XM@28211|Alphaproteobacteria,3JYTY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_696055_1	1297865.APJD01000004_gene5292	6.752e-302	930.0	COG0477@1|root,COG2814@2|Bacteria,1QTY0@1224|Proteobacteria,2TXVS@28211|Alphaproteobacteria,3K6VC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,Sugar_tr
SX3_k127_696055_5	1297865.APJD01000004_gene5293	6.014e-137	437.0	COG1309@1|root,COG1309@2|Bacteria,1R4IA@1224|Proteobacteria,2U4FJ@28211|Alphaproteobacteria,3K5ZW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_696055_6	1297865.APJD01000004_gene5294	2.398e-133	426.0	COG0179@1|root,COG0179@2|Bacteria,1MUPF@1224|Proteobacteria,2TQQG@28211|Alphaproteobacteria,3JQYM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Fumarylacetoacetate (FAA) hydrolase family	MA20_19215	-	5.3.3.10	ko:K01826	ko00350,ko01120,ko01220,map00350,map01120,map01220	M00533	R04379,R04482	RC01141,RC01162	ko00000,ko00001,ko00002,ko01000	-	-	-	FAA_hydrolase
SX3_k127_697568_2	1297865.APJD01000030_gene1665	1.597e-208	649.0	COG2845@1|root,COG2845@2|Bacteria,1R4X7@1224|Proteobacteria,2U5AU@28211|Alphaproteobacteria,3JRNF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF459)	-	-	-	ko:K09795	-	-	-	-	ko00000	-	-	-	DUF459
SX3_k127_697568_0	1297865.APJD01000030_gene1666	5.777e-306	938.0	COG2951@1|root,COG3409@1|root,COG2951@2|Bacteria,COG3409@2|Bacteria,1MUZ3@1224|Proteobacteria,2TRP0@28211|Alphaproteobacteria,3JSHA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Putative peptidoglycan binding domain	MA20_18125	-	-	ko:K00786,ko:K08305	-	-	-	-	ko00000,ko01000,ko01011	-	GH103	-	PG_binding_1,SLT_2
SX3_k127_697568_4	1297865.APJD01000030_gene1667	6.955e-80	268.0	COG0789@1|root,COG0789@2|Bacteria,1RHT6@1224|Proteobacteria,2UCHB@28211|Alphaproteobacteria,3K21W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, mercury resistance	-	-	-	-	-	-	-	-	-	-	-	-	MerR,MerR-DNA-bind,MerR_1
SX3_k127_697568_1	1297865.APJD01000030_gene1668	1.074e-274	846.0	COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,2TQPY@28211|Alphaproteobacteria,3JXWH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	NADH:flavin oxidoreductase / NADH oxidase family	-	-	1.5.8.1,1.5.8.2	ko:K00317	ko00680,ko01120,ko01200,map00680,map01120,map01200	-	R01588,R02511	RC00185,RC00556,RC00557,RC00732	ko00000,ko00001,ko01000	-	-	-	Oxidored_FMN,Pyr_redox_2
SX3_k127_697568_3	1297865.APJD01000030_gene1669	8.275e-191	599.0	COG1210@1|root,COG1210@2|Bacteria,1MV5F@1224|Proteobacteria,2TRT6@28211|Alphaproteobacteria,3JRZK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	UTP-glucose-1-phosphate uridylyltransferase	galU	-	2.7.7.9	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	M00129,M00361,M00362,M00549	R00289	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
SX3_k127_708207_1	1297865.APJD01000007_gene1754	1.849e-178	559.0	COG0208@1|root,COG0208@2|Bacteria,1MWUS@1224|Proteobacteria,2TS3X@28211|Alphaproteobacteria,3JWYA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	nrdB	-	1.17.4.1	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	Ribonuc_red_sm
SX3_k127_708207_0	1297865.APJD01000007_gene1753	0.0	1860.0	COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,2TS19@28211|Alphaproteobacteria,3JTAV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	nrdE	-	1.17.4.1	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	M00053	R02017,R02018,R02019,R02024	RC00613	ko00000,ko00001,ko00002,ko01000,ko03400	-	-	-	ATP-cone,RNR_N,Ribonuc_red_lgC,Ribonuc_red_lgN
SX3_k127_708207_2	1297865.APJD01000007_gene1752	4.608e-115	372.0	2ED6T@1|root,3373F@2|Bacteria,1MU1D@1224|Proteobacteria,2U2SX@28211|Alphaproteobacteria,3JSMS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_708207_3	1297865.APJD01000007_gene1751	1.598e-113	366.0	COG3313@1|root,COG3313@2|Bacteria,1N66E@1224|Proteobacteria,2U1CQ@28211|Alphaproteobacteria,3JW6K@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Fe-S protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF1289
SX3_k127_708833_0	1297865.APJD01000005_gene4008	0.0	7226.0	COG3210@1|root,COG3210@2|Bacteria,1MXIP@1224|Proteobacteria,2TTVB@28211|Alphaproteobacteria,3JV1M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	TIGRFAM filamentous haemagglutinin family outer membrane protein	-	-	-	-	-	-	-	-	-	-	-	-	DUF3739,Haemagg_act
SX3_k127_708833_3	1297865.APJD01000005_gene4009	0.0	1315.0	COG0226@1|root,COG0226@2|Bacteria,1PZ5I@1224|Proteobacteria,2TVJD@28211|Alphaproteobacteria,3JXFQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	PBP superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	PBP_like_2
SX3_k127_708833_4	1297865.APJD01000052_gene1223	0.0	1172.0	COG0226@1|root,COG0226@2|Bacteria,1PZ5I@1224|Proteobacteria,2TVJD@28211|Alphaproteobacteria,3JWQV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	PBP superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	PBP_like_2
SX3_k127_708833_1	1297865.APJD01000052_gene1222	0.0	1508.0	COG0457@1|root,COG3914@1|root,COG0457@2|Bacteria,COG3914@2|Bacteria,1MVMG@1224|Proteobacteria,2TRVB@28211|Alphaproteobacteria,3JR8N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_41,TPR_16,TPR_19,TPR_2,TPR_8
SX3_k127_708833_2	1297865.APJD01000052_gene1221	0.0	1504.0	COG0457@1|root,COG0457@2|Bacteria,1MUZK@1224|Proteobacteria,2TS0U@28211|Alphaproteobacteria,3JXGS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyltransferase family 9 (heptosyltransferase)	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_9,TPR_11,TPR_16,TPR_2,TPR_8
SX3_k127_708833_12	1230476.C207_03707	3.127e-97	323.0	COG1595@1|root,COG1595@2|Bacteria,1RHYH@1224|Proteobacteria,2UA7M@28211|Alphaproteobacteria,3JZI7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Sigma-70, region 4	-	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_708833_5	1297865.APJD01000052_gene1219	0.0	1100.0	COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,2TRMU@28211|Alphaproteobacteria,3JWAH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Type II secretion system (T2SS), protein E, N-terminal domain	-	-	-	ko:K02454	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSE,T2SSE_N
SX3_k127_708833_6	1297865.APJD01000052_gene1218	1.069e-245	760.0	COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,2TV76@28211|Alphaproteobacteria,3JXX4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Type II secretion system (T2SS), protein F	-	-	-	ko:K02455,ko:K02653	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.15,3.A.15.2	-	-	T2SSF
SX3_k127_708833_13	1297865.APJD01000052_gene1216	6.214e-93	306.0	2ENGV@1|root,33G4C@2|Bacteria,1MYRN@1224|Proteobacteria,2UAMZ@28211|Alphaproteobacteria,3JZY7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Prokaryotic N-terminal methylation motif	-	-	-	-	-	-	-	-	-	-	-	-	N_methyl
SX3_k127_708833_10	1297865.APJD01000052_gene1215	4.479e-146	464.0	COG4967@1|root,COG4967@2|Bacteria,1RCF1@1224|Proteobacteria,2U6KI@28211|Alphaproteobacteria	28211|Alphaproteobacteria	NU	type IV pilus modification protein PilV	-	-	-	-	-	-	-	-	-	-	-	-	N_methyl
SX3_k127_708833_9	1297865.APJD01000052_gene1214	2.164e-159	507.0	COG3156@1|root,COG3156@2|Bacteria,1R9D9@1224|Proteobacteria,2TV4P@28211|Alphaproteobacteria,3JXH9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Type II secretion system (T2SS), protein K	-	-	-	ko:K02460	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSK
SX3_k127_708833_7	1297865.APJD01000052_gene1213	3.71e-216	674.0	COG3166@1|root,COG3166@2|Bacteria,1RJTG@1224|Proteobacteria,2U14U@28211|Alphaproteobacteria,3JX7Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Fimbrial assembly protein (PilN)	-	-	-	-	-	-	-	-	-	-	-	-	PilN
SX3_k127_708833_11	1297865.APJD01000052_gene1212	4.99e-114	368.0	2DKUH@1|root,30CV1@2|Bacteria,1RAFH@1224|Proteobacteria,2U5U4@28211|Alphaproteobacteria,3JYF9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Type II secretion system (T2SS), protein M subtype b	-	-	-	ko:K02462	ko03070,ko05111,map03070,map05111	M00331	-	-	ko00000,ko00001,ko00002,ko02044	3.A.15	-	-	T2SSM_b
SX3_k127_708833_8	1297865.APJD01000052_gene1211	9.403e-216	669.0	COG0451@1|root,COG0451@2|Bacteria,1MXKV@1224|Proteobacteria,2TRM0@28211|Alphaproteobacteria,3JR0I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	GM	epimerase dehydratase	-	-	4.1.1.35	ko:K08678	ko00520,ko01100,map00520,map01100	M00361	R01384	RC00508	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
SX3_k127_708833_15	335659.S23_30740	4.897e-13	76.0	COG1638@1|root,COG1638@2|Bacteria,1MVYB@1224|Proteobacteria,2TT88@28211|Alphaproteobacteria,3JVXZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein, family 7	-	-	-	-	-	-	-	-	-	-	-	-	DctP
SX3_k127_713064_0	1297865.APJD01000011_gene6538	2.204e-284	878.0	COG0654@1|root,COG0654@2|Bacteria,1MUN4@1224|Proteobacteria,2TQT8@28211|Alphaproteobacteria,3JTRW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	pcpB	-	1.14.13.127,1.14.13.50	ko:K03391,ko:K05712	ko00360,ko00361,ko00364,ko01100,ko01120,ko01220,map00360,map00361,map00364,map01100,map01120,map01220	M00545	R03982,R06786,R06787,R07779	RC00236,RC01932	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_3
SX3_k127_713064_1	1297865.APJD01000011_gene6539	1.485e-188	594.0	COG0053@1|root,COG0053@2|Bacteria,1MUDS@1224|Proteobacteria,2TT78@28211|Alphaproteobacteria,3JQTV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family	-	-	-	-	-	-	-	-	-	-	-	-	Cation_efflux,ZT_dimer
SX3_k127_713064_2	1297865.APJD01000011_gene6540	9.019e-59	205.0	2ESMC@1|root,33K5Y@2|Bacteria,1PQ47@1224|Proteobacteria,2V2J3@28211|Alphaproteobacteria,3K4YG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_713064_3	1297865.APJD01000011_gene6541	1.066e-42	156.0	COG3637@1|root,COG3659@1|root,COG3637@2|Bacteria,COG3659@2|Bacteria,1Q8C7@1224|Proteobacteria,2TU66@28211|Alphaproteobacteria,3JRBM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Carbohydrate-selective porin, OprB family	-	-	-	ko:K16080	-	-	-	-	ko00000,ko02000	1.B.4.2.2	-	-	OMP_b-brl,OprB
SX3_k127_713824_4	1297865.APJD01000004_gene5354	3.124e-84	279.0	COG1309@1|root,COG1309@2|Bacteria,1N2VD@1224|Proteobacteria,2U0HH@28211|Alphaproteobacteria,3JR4G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_713824_2	1230476.C207_02689	5.147e-131	420.0	COG0262@1|root,COG0262@2|Bacteria,1MU1W@1224|Proteobacteria,2U0RG@28211|Alphaproteobacteria,3JUIU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	RibD C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	RibD_C
SX3_k127_713824_7	670307.HYPDE_36683	2.888e-48	175.0	COG0640@1|root,COG0640@2|Bacteria,1RH5P@1224|Proteobacteria,2U960@28211|Alphaproteobacteria,3N8NC@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory protein, arsR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_20
SX3_k127_713824_3	1297865.APJD01000004_gene5351	1.101e-103	337.0	COG3832@1|root,COG3832@2|Bacteria,1MZXG@1224|Proteobacteria,2UBQP@28211|Alphaproteobacteria,3K6AW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	-	-	-	-	-	-	-	-	-	AHSA1
SX3_k127_713824_1	1297865.APJD01000004_gene5350	2.268e-208	650.0	COG0111@1|root,COG0111@2|Bacteria,1MW1U@1224|Proteobacteria,2TSUU@28211|Alphaproteobacteria,3JVGJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EH	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	MA20_04115	-	1.1.1.79,1.1.1.81	ko:K12972	ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00260,map00620,map00630,map01100,map01110,map01120	-	R00465,R01388,R01392,R02527	RC00031,RC00042,RC00670	ko00000,ko00001,ko01000	-	-	-	2-Hacid_dh_C
SX3_k127_713824_8	1297865.APJD01000004_gene5349	3.279e-45	166.0	2AFQN@1|root,315SI@2|Bacteria,1N6D4@1224|Proteobacteria,2UD7Q@28211|Alphaproteobacteria,3K0B8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_713824_6	1297865.APJD01000004_gene5348	6.474e-75	252.0	COG3795@1|root,COG3795@2|Bacteria,1RJIJ@1224|Proteobacteria,2U967@28211|Alphaproteobacteria,3JYRU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	YCII-related domain	MA20_04110	-	-	-	-	-	-	-	-	-	-	-	YCII
SX3_k127_713824_0	1297865.APJD01000004_gene5347	1.326e-268	828.0	COG4941@1|root,COG4941@2|Bacteria,1MU3D@1224|Proteobacteria,2TSNH@28211|Alphaproteobacteria,3JT2N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Belongs to the sigma-70 factor family. ECF subfamily	MA20_04105	-	-	ko:K03088	-	-	-	-	ko00000,ko03021	-	-	-	Sigma70_r2,Sigma70_r4_2
SX3_k127_713824_10	335659.S23_10200	0.0006291	42.0	COG2852@1|root,COG2852@2|Bacteria,1N0QU@1224|Proteobacteria,2UFZ7@28211|Alphaproteobacteria,3JYGV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF559)	-	-	-	-	-	-	-	-	-	-	-	-	DUF559
SX3_k127_713824_5	1297865.APJD01000004_gene5346	1.276e-79	268.0	COG3795@1|root,COG3795@2|Bacteria,1RKYW@1224|Proteobacteria,2UAMV@28211|Alphaproteobacteria,3JYIS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	DoxX-like family	-	-	-	-	-	-	-	-	-	-	-	-	DoxX_2
SX3_k127_713824_9	1297865.APJD01000004_gene5345	1.474e-23	100.0	COG3832@1|root,COG3832@2|Bacteria,1RDMX@1224|Proteobacteria,2TSWJ@28211|Alphaproteobacteria,3JX1W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polyketide cyclase / dehydrase and lipid transport	-	-	-	-	-	-	-	-	-	-	-	-	Polyketide_cyc2
SX3_k127_718870_1	1297865.APJD01000014_gene816	0.0	1065.0	COG1982@1|root,COG1982@2|Bacteria,1MWK4@1224|Proteobacteria,2TSSN@28211|Alphaproteobacteria,3JT6F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Orn/Lys/Arg decarboxylase, N-terminal domain	MA20_14975	-	4.1.1.17	ko:K01581	ko00330,ko00480,ko01100,ko01110,ko01130,map00330,map00480,map01100,map01110,map01130	M00134	R00670	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	OKR_DC_1,OKR_DC_1_C,OKR_DC_1_N
SX3_k127_718870_2	1297865.APJD01000014_gene815	8.95e-239	741.0	COG1960@1|root,COG1960@2|Bacteria,1MXMQ@1224|Proteobacteria,2TRYH@28211|Alphaproteobacteria,3JWMP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Acyl-CoA dehydrogenase, C-terminal domain	-	-	-	-	-	-	-	-	-	-	-	-	Acyl-CoA_dh_2,Acyl-CoA_dh_N
SX3_k127_718870_10	1297865.APJD01000014_gene814	4.718e-80	267.0	COG5485@1|root,COG5485@2|Bacteria,1RIK8@1224|Proteobacteria,2U9XV@28211|Alphaproteobacteria,3JYS4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	SnoaL-like polyketide cyclase	-	-	-	-	-	-	-	-	-	-	-	-	SnoaL
SX3_k127_718870_5	1297865.APJD01000014_gene813	4.966e-212	665.0	28K34@1|root,2Z9SD@2|Bacteria,1REGR@1224|Proteobacteria,2U7DI@28211|Alphaproteobacteria,3K3YS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_718870_0	1297865.APJD01000014_gene812	0.0	1113.0	COG2114@1|root,COG3850@1|root,COG2114@2|Bacteria,COG3850@2|Bacteria,1QW6N@1224|Proteobacteria,2TS3S@28211|Alphaproteobacteria,3JS4X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	Guanylate_cyc,HAMP
SX3_k127_718870_7	1297865.APJD01000014_gene811	2.825e-115	371.0	COG5388@1|root,COG5388@2|Bacteria,1MXF0@1224|Proteobacteria,2U3WI@28211|Alphaproteobacteria,3JUR4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PAS domain	MA20_31625	-	-	-	-	-	-	-	-	-	-	-	PAS_5
SX3_k127_718870_6	1297865.APJD01000014_gene810	4.379e-164	517.0	COG0705@1|root,COG0705@2|Bacteria,1MYFP@1224|Proteobacteria,2TSJG@28211|Alphaproteobacteria,3JSJH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Rhomboid family	MA20_31620	-	-	-	-	-	-	-	-	-	-	-	Rhomboid
SX3_k127_718870_9	1230476.C207_00492	6.719e-81	271.0	COG0517@1|root,COG0517@2|Bacteria,1N0H3@1224|Proteobacteria,2UC0F@28211|Alphaproteobacteria,3JY3F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain in cystathionine beta-synthase and other proteins.	MA20_31615	-	-	-	-	-	-	-	-	-	-	-	CBS
SX3_k127_718870_4	1297865.APJD01000014_gene808	4.487e-217	675.0	COG1752@1|root,COG1752@2|Bacteria,1MUM9@1224|Proteobacteria,2TVQR@28211|Alphaproteobacteria,3JS5E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Patatin-like phospholipase	rssA	GO:0003674,GO:0003824,GO:0016787	-	ko:K07001	-	-	-	-	ko00000	-	-	-	Patatin
SX3_k127_718870_3	1297865.APJD01000014_gene807	4.767e-228	707.0	28NPA@1|root,308U9@2|Bacteria,1RG7C@1224|Proteobacteria,2TW0T@28211|Alphaproteobacteria,3JWQ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_31605	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_718870_8	1230476.C207_00489	6.981e-105	341.0	COG2202@1|root,COG5001@1|root,COG2202@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,2TQS3@28211|Alphaproteobacteria,3JQV4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Diguanylate cyclase	MA20_31570	-	-	-	-	-	-	-	-	-	-	-	EAL,GGDEF,PAS_4,PAS_7,PAS_8,PAS_9
SX3_k127_724899_1	1297865.APJD01000028_gene5154	3.784e-293	899.0	COG3182@1|root,COG3182@2|Bacteria,1MXGY@1224|Proteobacteria,2TV6J@28211|Alphaproteobacteria,3JSQA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	PepSY-associated TM region	MA20_29520	-	-	-	-	-	-	-	-	-	-	-	PepSY_TM
SX3_k127_724899_0	1297865.APJD01000028_gene5153	0.0	1461.0	COG4773@1|root,COG4773@2|Bacteria,1QTT0@1224|Proteobacteria,2TQSQ@28211|Alphaproteobacteria,3JQP4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB dependent receptor	MA20_29525	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,STN,TonB_dep_Rec
SX3_k127_724899_2	1297865.APJD01000028_gene5152	9.657e-12	66.0	COG0606@1|root,COG0606@2|Bacteria	2|Bacteria	O	chelatase, subunit chli	comM	-	-	ko:K07391	-	-	-	-	ko00000	-	-	-	ChlI,Mg_chelatase,Mg_chelatase_C
SX3_k127_735156_1	1297865.APJD01000005_gene3829	1.921e-210	656.0	COG2070@1|root,COG2070@2|Bacteria,1MWPC@1224|Proteobacteria,2TQRT@28211|Alphaproteobacteria,3JQS9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Nitronate monooxygenase	MA20_15180	-	1.13.12.16	ko:K00459	ko00910,map00910	-	R00025	RC02541,RC02759	ko00000,ko00001,ko01000	-	-	-	NMO
SX3_k127_735156_0	1297865.APJD01000005_gene3828	1.642e-218	680.0	COG4188@1|root,COG4188@2|Bacteria,1MW2N@1224|Proteobacteria,2U54T@28211|Alphaproteobacteria,3JSGT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	dienelactone hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	DLH,Hydrolase_4,PAF-AH_p_II,Peptidase_S9
SX3_k127_735156_2	1297865.APJD01000005_gene3827	3.556e-205	644.0	COG0604@1|root,COG0604@2|Bacteria,1MX8A@1224|Proteobacteria,2TVPQ@28211|Alphaproteobacteria,3JQNY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Zinc-binding dehydrogenase	MA20_15185	-	1.6.5.5	ko:K00344	-	-	-	-	ko00000,ko01000	-	-	-	ADH_N,ADH_zinc_N
SX3_k127_735156_3	1297865.APJD01000005_gene3826	8.173e-167	524.0	COG2334@1|root,COG2334@2|Bacteria,1R78A@1224|Proteobacteria,2TUGC@28211|Alphaproteobacteria,3K2AY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Phosphotransferase enzyme family	-	-	-	-	-	-	-	-	-	-	-	-	APH
SX3_k127_735156_4	288000.BBta_3559	6.925e-39	154.0	COG4552@1|root,COG4552@2|Bacteria,1MZ5Y@1224|Proteobacteria,2UUEF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_9
SX3_k127_743241_4	1230476.C207_06807	3.799e-10	61.0	COG2826@1|root,COG2826@2|Bacteria,1PP49@1224|Proteobacteria,2TRVA@28211|Alphaproteobacteria,3JZ7D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Integrase core domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_38,rve
SX3_k127_743241_0	1297865.APJD01000025_gene4017	0.0	1464.0	COG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2TWPZ@28211|Alphaproteobacteria,3JTJD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	-	-	-	-	-	-	-	-	-	-	-	-	HATPase_c,HisKA,PAS,PAS_4,PAS_8,Response_reg
SX3_k127_743241_3	1297865.APJD01000025_gene4016	5.019e-100	327.0	2A6SJ@1|root,30VKT@2|Bacteria,1RAEW@1224|Proteobacteria,2U654@28211|Alphaproteobacteria,3JYG8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_743241_1	1297865.APJD01000025_gene4015	2.052e-298	917.0	COG0606@1|root,COG0606@2|Bacteria,1MU4R@1224|Proteobacteria,2TQU6@28211|Alphaproteobacteria,3JVC0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Magnesium chelatase, subunit ChlI C-terminal	comM	-	-	ko:K07391	-	-	-	-	ko00000	-	-	-	ChlI,Mg_chelatase,Mg_chelatase_C
SX3_k127_743241_2	709797.CSIRO_0917	3.358e-131	426.0	COG1961@1|root,COG1961@2|Bacteria,1N6DV@1224|Proteobacteria,2TVBV@28211|Alphaproteobacteria,3JTY9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Recombinase zinc beta ribbon domain	-	-	-	-	-	-	-	-	-	-	-	-	Recombinase,Resolvase,Zn_ribbon_recom
SX3_k127_754025_4	1429916.X566_00740	1.431e-157	499.0	28M6F@1|root,2ZAK3@2|Bacteria,1QRV5@1224|Proteobacteria,2TTG0@28211|Alphaproteobacteria,3JWMJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_754025_3	1429916.X566_00735	9.328e-189	593.0	COG4227@1|root,COG4227@2|Bacteria,1MU8I@1224|Proteobacteria,2TRIT@28211|Alphaproteobacteria,3JR5I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Domain of unknown function (DUF1738)	ardC	-	-	-	-	-	-	-	-	-	-	-	DUF1738
SX3_k127_754025_1	1297865.APJD01000040_gene2669	1.952e-270	832.0	COG4974@1|root,COG4974@2|Bacteria,1R72R@1224|Proteobacteria,2U27G@28211|Alphaproteobacteria,3K5VJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Phage integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_1,Phage_integrase
SX3_k127_754025_0	1297865.APJD01000040_gene2670	4.895e-305	940.0	COG0582@1|root,COG0582@2|Bacteria,1NX90@1224|Proteobacteria,2U3EM@28211|Alphaproteobacteria,3K5VK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Phage integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_integrase
SX3_k127_754025_2	1297865.APJD01000040_gene2671	4.012e-217	683.0	COG4974@1|root,COG4974@2|Bacteria,1MXZX@1224|Proteobacteria,2U0B6@28211|Alphaproteobacteria,3JWH2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Phage integrase, N-terminal SAM-like domain	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_1,Phage_integrase
SX3_k127_756786_1	1297865.APJD01000011_gene6622	1.352e-247	768.0	COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,2TSA0@28211|Alphaproteobacteria,3JQM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Belongs to the thiolase family	MA20_06750	-	2.3.1.9	ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	M00088,M00095,M00373,M00374,M00375	R00238,R01177	RC00004,RC00326	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Thiolase_C,Thiolase_N
SX3_k127_756786_0	1297865.APJD01000011_gene6621	0.0	1073.0	COG0318@1|root,COG0318@2|Bacteria,1MUIC@1224|Proteobacteria,2TRRZ@28211|Alphaproteobacteria,3JT63@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_06755	-	6.2.1.3	ko:K00666,ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	M00086	R01280	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	4.C.1.1	-	-	AMP-binding,AMP-binding_C
SX3_k127_756786_2	1297865.APJD01000011_gene6620	1.232e-103	337.0	2BSJT@1|root,32MNB@2|Bacteria,1R9E6@1224|Proteobacteria,2U4IP@28211|Alphaproteobacteria,3JWZW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_756786_3	1297865.APJD01000011_gene6619	3.231e-55	193.0	COG2267@1|root,COG2267@2|Bacteria,1QU7K@1224|Proteobacteria,2U0H3@28211|Alphaproteobacteria,3JR1E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Serine aminopeptidase, S33	-	-	2.7.10.2,3.3.2.9	ko:K01253,ko:K08253	ko00980,ko04976,ko05204,map00980,map04976,map05204	-	R07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443	RC01447,RC01728,RC01764,RC02528	ko00000,ko00001,ko01000,ko01002	-	-	-	Abhydrolase_1
SX3_k127_762805_5	1297865.APJD01000006_gene4593	4.289e-133	428.0	COG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,2TQSY@28211|Alphaproteobacteria,3JRRG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	transport, permease protein	yadH	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K01992	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC2_membrane
SX3_k127_762805_3	1297865.APJD01000006_gene4594	2.18e-193	606.0	COG1131@1|root,COG1131@2|Bacteria,1MUW7@1224|Proteobacteria,2TR2Q@28211|Alphaproteobacteria,3JU27@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter	hndI	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944	-	ko:K01990	-	M00254	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
SX3_k127_762805_9	398525.KB900701_gene6655	1.452e-52	186.0	COG1598@1|root,COG1598@2|Bacteria,1N2X7@1224|Proteobacteria,2UA2Y@28211|Alphaproteobacteria,3K08I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HicB_like antitoxin of bacterial toxin-antitoxin system	-	-	-	-	-	-	-	-	-	-	-	-	HicB_lk_antitox
SX3_k127_762805_10	1197906.CAJQ02000023_gene2402	3.267e-31	124.0	COG1724@1|root,COG1724@2|Bacteria	2|Bacteria	N	mRNA binding	-	-	-	ko:K07339	-	-	-	-	ko00000,ko01000,ko02048	-	-	-	HicA_toxin
SX3_k127_762805_4	1297865.APJD01000006_gene4595	4.007e-139	443.0	COG2885@1|root,COG2885@2|Bacteria,1MYXS@1224|Proteobacteria,2UBGB@28211|Alphaproteobacteria,3JRY6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	OmpA family	-	-	-	-	-	-	-	-	-	-	-	-	OmpA
SX3_k127_762805_8	1297865.APJD01000006_gene4596	2.224e-74	251.0	2CK9Y@1|root,32SBX@2|Bacteria,1N68N@1224|Proteobacteria,2UD35@28211|Alphaproteobacteria,3JY92@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_02045	-	-	-	-	-	-	-	-	-	-	-	Cys_rich_FGFR
SX3_k127_762805_0	1297865.APJD01000006_gene4597	0.0	1672.0	COG0210@1|root,COG0210@2|Bacteria,1MU0G@1224|Proteobacteria,2TS2B@28211|Alphaproteobacteria,3JQMS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	UvrD-like helicase C-terminal domain	uvrD	-	3.6.4.12	ko:K03657	ko03420,ko03430,map03420,map03430	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	UvrD-helicase,UvrD_C
SX3_k127_762805_11	1297865.APJD01000006_gene4598	7.556e-23	102.0	COG5487@1|root,COG5487@2|Bacteria,1NGAH@1224|Proteobacteria,2UJIU@28211|Alphaproteobacteria,3K0ZQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	UPF0391 membrane protein	MA20_02060	-	-	-	-	-	-	-	-	-	-	-	DUF1328
SX3_k127_762805_6	1297865.APJD01000006_gene4599	8.157e-109	353.0	COG0824@1|root,COG0824@2|Bacteria,1MZB3@1224|Proteobacteria,2U7CU@28211|Alphaproteobacteria,3JW3M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Thioesterase-like superfamily	-	-	-	ko:K07107	-	-	-	-	ko00000,ko01000	-	-	-	4HBT_2
SX3_k127_762805_1	1297865.APJD01000006_gene4600	6.892e-315	965.0	COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2TR2Z@28211|Alphaproteobacteria,3JS63@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	FAD linked oxidases, C-terminal domain	dld	GO:0003674,GO:0003824,GO:0004457,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008720,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046034,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	1.1.1.303,1.1.1.4,1.1.2.4	ko:K00004,ko:K00102	ko00620,ko00650,map00620,map00650	-	R00197,R02855,R02946,R10504	RC00044,RC00205,RC00525	ko00000,ko00001,ko01000	-	-	-	FAD-oxidase_C,FAD_binding_4
SX3_k127_762805_7	1297865.APJD01000006_gene4601	1.492e-76	257.0	2A993@1|root,30YDZ@2|Bacteria,1RIG9@1224|Proteobacteria,2U7MX@28211|Alphaproteobacteria,3JZST@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_762805_2	1297865.APJD01000006_gene4602	1.14e-239	742.0	COG0659@1|root,COG0659@2|Bacteria,1MWDF@1224|Proteobacteria,2TT0G@28211|Alphaproteobacteria,3JV4A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Permease family	-	-	-	-	-	-	-	-	-	-	-	-	STAS,Sulfate_transp
SX3_k127_775266_3	1297865.APJD01000003_gene6141	0.0	1053.0	COG3653@1|root,COG3653@2|Bacteria,1MWWY@1224|Proteobacteria,2TSZZ@28211|Alphaproteobacteria,3JV0V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Amidohydrolase family	MA20_22865	-	-	-	-	-	-	-	-	-	-	-	Amidohydro_3
SX3_k127_775266_12	258594.RPA0628	7.952e-06	49.0	COG3409@1|root,COG5480@1|root,COG3409@2|Bacteria,COG5480@2|Bacteria,1P9ZA@1224|Proteobacteria,2TSTF@28211|Alphaproteobacteria,3JVQW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Protein of unknown function (DUF1036)	MA20_21840	-	-	-	-	-	-	-	-	-	-	-	DUF1036,PG_binding_1
SX3_k127_775266_9	1297865.APJD01000003_gene6140	3.331e-146	463.0	COG0625@1|root,COG0625@2|Bacteria,1REDI@1224|Proteobacteria,2TR9W@28211|Alphaproteobacteria,3JVAC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Glutathione S-transferase, C-terminal domain	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_C_2,GST_N,GST_N_3
SX3_k127_775266_4	1297865.APJD01000003_gene6139	4.7e-286	879.0	COG0477@1|root,COG2814@2|Bacteria,1QWJJ@1224|Proteobacteria,2TWZP@28211|Alphaproteobacteria,3JSYC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_22870	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_775266_8	1297865.APJD01000003_gene6138	5.426e-149	473.0	COG4798@1|root,COG4798@2|Bacteria,1NNHX@1224|Proteobacteria,2TVU9@28211|Alphaproteobacteria,3JUSH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	methyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Ubie_methyltran
SX3_k127_775266_10	172088.AUGA01000013_gene7296	1.56e-123	398.0	COG1136@1|root,COG1136@2|Bacteria,1NCFC@1224|Proteobacteria,2TSNF@28211|Alphaproteobacteria,3JV6H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter	MA20_22875	-	-	ko:K02003	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	ABC_tran
SX3_k127_775266_2	1297865.APJD01000003_gene6136	0.0	1565.0	COG0577@1|root,COG0577@2|Bacteria,1MVCT@1224|Proteobacteria,2TSPH@28211|Alphaproteobacteria,3JTE5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	FtsX-like permease family	attG	-	-	ko:K02004	-	M00258	-	-	ko00000,ko00002,ko02000	3.A.1	-	-	FtsX,MacB_PCD
SX3_k127_775266_7	1038860.AXAP01000059_gene1448	4.06e-185	583.0	COG5621@1|root,COG5621@2|Bacteria,1MUVF@1224|Proteobacteria,2TSVN@28211|Alphaproteobacteria,3JRBC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lipocalin-like domain	-	-	-	-	-	-	-	-	-	-	-	-	CrtC,Lipocalin_9
SX3_k127_775266_11	1297865.APJD01000003_gene6134	3.744e-79	266.0	COG3788@1|root,COG3788@2|Bacteria,1NBHH@1224|Proteobacteria,2UA0K@28211|Alphaproteobacteria,3JYVE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	MAPEG family	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	MAPEG
SX3_k127_775266_5	1230476.C207_04002	2.995e-251	776.0	COG0683@1|root,COG0683@2|Bacteria,1MUCB@1224|Proteobacteria,2TRWV@28211|Alphaproteobacteria,3JR9V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Periplasmic binding protein	MA20_22895	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_6
SX3_k127_775266_13	224911.27354970	0.0009153	44.0	COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,2TR9R@28211|Alphaproteobacteria,3JT1H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Rhodanese Homology Domain	sseA	-	2.8.1.1,2.8.1.2	ko:K01011	ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122	-	R01931,R03105,R03106	RC00214	ko00000,ko00001,ko01000	-	-	-	Rhodanese
SX3_k127_775266_1	1297865.APJD01000003_gene6132	0.0	2021.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JRP3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Efflux pump membrane transporter	-	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
SX3_k127_775266_6	1297865.APJD01000003_gene6131	2.971e-239	745.0	COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,2TSWK@28211|Alphaproteobacteria,3JSRV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	ko:K19595	-	M00768,M00769	-	-	ko00000,ko00002,ko01504,ko02000	2.A.6.2.25,2.A.6.2.34,8.A.1	-	-	Biotin_lipoyl_2,HlyD_3,HlyD_D23
SX3_k127_775266_0	1297865.APJD01000003_gene6130	0.0	2281.0	COG1572@1|root,COG2755@1|root,COG2931@1|root,COG3210@1|root,COG4932@1|root,COG1572@2|Bacteria,COG2755@2|Bacteria,COG2931@2|Bacteria,COG3210@2|Bacteria,COG4932@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,3JWUW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	QU	COG2931 RTX toxins and related Ca2 -binding proteins	-	-	-	-	-	-	-	-	-	-	-	-	Cadherin,HemolysinCabind
SX3_k127_778234_2	1297865.APJD01000005_gene3793	2.381e-225	703.0	COG1088@1|root,COG1088@2|Bacteria,1MU5E@1224|Proteobacteria,2TT5T@28211|Alphaproteobacteria,3JRQ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily	rfbB	-	4.2.1.46	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	M00793	R06513	RC00402	ko00000,ko00001,ko00002,ko01000	-	-	-	GDP_Man_Dehyd
SX3_k127_778234_4	1038860.AXAP01000134_gene6928	1.52e-168	532.0	COG1209@1|root,COG1209@2|Bacteria,1MU0X@1224|Proteobacteria,2TQPI@28211|Alphaproteobacteria,3JTWF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis	rfbA	-	2.7.7.24	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	M00793	R02328	RC00002	ko00000,ko00001,ko00002,ko01000	-	-	-	NTP_transferase
SX3_k127_778234_5	1297865.APJD01000005_gene3795	1.545e-122	392.0	COG1898@1|root,COG1898@2|Bacteria,1R9YD@1224|Proteobacteria,2U7G8@28211|Alphaproteobacteria,3JRZ5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose	rfbC	-	5.1.3.13	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R06514	RC01531	ko00000,ko00001,ko00002,ko01000	-	-	-	dTDP_sugar_isom
SX3_k127_778234_3	1297865.APJD01000005_gene3796	1.324e-192	604.0	COG1091@1|root,COG1091@2|Bacteria,1MUXM@1224|Proteobacteria,2TSP6@28211|Alphaproteobacteria,3JU6G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose	rfbD	-	1.1.1.133	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	M00793	R02777	RC00182	ko00000,ko00001,ko00002,ko01000	-	-	-	RmlD_sub_bind
SX3_k127_778234_1	1297865.APJD01000005_gene3797	1.022e-281	866.0	COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,2TREV@28211|Alphaproteobacteria,3JTIE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	rkpK	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	1.1.1.22	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	M00014,M00129,M00361,M00362	R00286	RC00291	ko00000,ko00001,ko00002,ko01000	-	-	-	UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
SX3_k127_778234_0	1297865.APJD01000005_gene3798	0.0	1514.0	COG1216@1|root,COG1216@2|Bacteria,1MX5Z@1224|Proteobacteria,2U0IP@28211|Alphaproteobacteria,3JVJ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glycosyl transferase family 2	-	-	-	ko:K20444	-	-	-	-	ko00000,ko01000,ko01005,ko02000	4.D.1.3	GT2,GT4	-	Glyco_tranf_2_3,Glycos_transf_2
SX3_k127_778234_6	114615.BRADO7024	1.75e-75	267.0	COG1216@1|root,COG1216@2|Bacteria,1QP7Y@1224|Proteobacteria,2TR34@28211|Alphaproteobacteria,3JSZF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Glycosyltransferase like family 2	-	-	-	-	-	-	-	-	-	-	-	-	DUF616,Glyco_tranf_2_3,Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1,Glycos_transf_2
SX3_k127_793184_3	1230476.C207_04434	3.617e-187	586.0	COG2207@1|root,COG2207@2|Bacteria,1R6Y5@1224|Proteobacteria,2U4SH@28211|Alphaproteobacteria,3JT6E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	ko:K04033	-	-	-	-	ko00000,ko03000	-	-	-	HTH_18
SX3_k127_793184_5	1230476.C207_04435	1.104e-82	278.0	COG1846@1|root,COG1846@2|Bacteria,1N7G0@1224|Proteobacteria,2UA2S@28211|Alphaproteobacteria,3JZV7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix multiple antibiotic resistance protein	-	-	-	-	-	-	-	-	-	-	-	-	MarR,MarR_2
SX3_k127_793184_4	497321.C664_04887	3.469e-92	331.0	COG0642@1|root,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,2VGZQ@28216|Betaproteobacteria,2KVM2@206389|Rhodocyclales	206389|Rhodocyclales	T	Periplasmic sensor domain	-	-	-	-	-	-	-	-	-	-	-	-	CHASE8,HAMP,HATPase_c,HisKA,Hpt,Response_reg
SX3_k127_793184_2	1297865.APJD01000031_gene1578	1.639e-224	700.0	COG2200@1|root,COG2200@2|Bacteria,1N299@1224|Proteobacteria,2U37V@28211|Alphaproteobacteria,3JXF4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Putative diguanylate phosphodiesterase	-	-	-	-	-	-	-	-	-	-	-	-	EAL,Response_reg
SX3_k127_793184_6	1297865.APJD01000031_gene1579	4.59e-65	225.0	COG2198@1|root,COG2198@2|Bacteria,1RFH3@1224|Proteobacteria,2U7ZU@28211|Alphaproteobacteria,3JZBC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Hpt
SX3_k127_793184_1	1230476.C207_04437	8.732e-258	799.0	COG1914@1|root,COG1914@2|Bacteria,1MW6X@1224|Proteobacteria,2TRNM@28211|Alphaproteobacteria,3K2EG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Natural resistance-associated macrophage protein	-	-	-	-	-	-	-	-	-	-	-	-	Nramp
SX3_k127_793184_7	1297865.APJD01000031_gene1581	3.082e-51	183.0	2CDU8@1|root,32M9R@2|Bacteria,1P33P@1224|Proteobacteria,2UJP5@28211|Alphaproteobacteria,3K297@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_793184_9	1297865.APJD01000031_gene1582	6.816e-27	117.0	COG3197@1|root,COG3197@2|Bacteria,1NG90@1224|Proteobacteria,2UJFJ@28211|Alphaproteobacteria,3K1A3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Cytochrome oxidase maturation protein cbb3-type	fixS	-	-	-	-	-	-	-	-	-	-	-	FixS
SX3_k127_793184_0	1297865.APJD01000031_gene1583	0.0	1210.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,3JTAD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Heavy-metal-associated domain	-	-	3.6.3.4	ko:K01533	-	-	R00086	RC00002	ko00000,ko01000	3.A.3.5	-	-	E1-E2_ATPase,HMA,Hydrolase
SX3_k127_804126_4	1297865.APJD01000003_gene6366	1.984e-26	109.0	COG5002@1|root,COG5002@2|Bacteria,1MWF3@1224|Proteobacteria,2TR46@28211|Alphaproteobacteria,3JSP1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	His Kinase A (phosphoacceptor) domain	phoR	-	2.7.13.3	ko:K07636	ko02020,map02020	M00434	-	-	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	-	-	-	HATPase_c,HisKA,PAS_4,PAS_8
SX3_k127_804126_1	1230476.C207_02754	4.006e-221	686.0	COG0392@1|root,COG0392@2|Bacteria,1MXH9@1224|Proteobacteria,2TUMC@28211|Alphaproteobacteria,3JTNM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Lysylphosphatidylglycerol synthase TM region	MA20_22425	-	2.3.2.3	ko:K07027,ko:K14205	ko01503,ko02020,ko05150,map01503,map02020,map05150	M00726	-	-	ko00000,ko00001,ko00002,ko01000,ko01504,ko02000	2.A.1.3.37,4.D.2	-	-	DUF2156,LPG_synthase_TM
SX3_k127_804126_2	1297865.APJD01000003_gene6364	1.183e-60	210.0	2A15D@1|root,30PB8@2|Bacteria,1RHY8@1224|Proteobacteria,2UDK4@28211|Alphaproteobacteria,3K085@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_22445	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_804126_0	1230476.C207_02759	1.749e-288	887.0	COG2885@1|root,COG2885@2|Bacteria,1MWHF@1224|Proteobacteria,2TUGX@28211|Alphaproteobacteria,3JTJQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the ompA family	MA20_22450	-	-	ko:K03286	-	-	-	-	ko00000,ko02000	1.B.6	-	-	BON,OmpA
SX3_k127_804126_3	1297865.APJD01000003_gene6362	1.859e-33	149.0	COG0726@1|root,COG0726@2|Bacteria,1MVKH@1224|Proteobacteria,2TTEI@28211|Alphaproteobacteria,3JQWS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	polysaccharide deacetylase	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_deac_1
SX3_k127_807519_6	1297865.APJD01000023_gene1130	7.936e-59	204.0	COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQQJ@28211|Alphaproteobacteria,3JT93@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TOBE domain	smoK	-	-	ko:K10111	ko02010,map02010	M00194,M00200,M00204,M00207,M00491	-	-	ko00000,ko00001,ko00002,ko01000,ko02000	3.A.1.1	-	-	ABC_tran,TOBE,TOBE_2
SX3_k127_807519_4	1297865.APJD01000023_gene1131	1.318e-172	544.0	COG0395@1|root,COG0395@2|Bacteria,1MVVT@1224|Proteobacteria,2TQJF@28211|Alphaproteobacteria,3JSJ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	smoG	-	-	ko:K10229	ko02010,map02010	M00200	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.5	-	-	BPD_transp_1
SX3_k127_807519_3	1297865.APJD01000023_gene1132	1.797e-175	554.0	COG1175@1|root,COG1175@2|Bacteria,1MVF1@1224|Proteobacteria,2TST1@28211|Alphaproteobacteria,3JU39@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Binding-protein-dependent transport system inner membrane component	smoF	-	-	ko:K10228	ko02010,map02010	M00200	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1.5	-	-	BPD_transp_1
SX3_k127_807519_1	1230476.C207_06711	3.509e-283	871.0	COG1653@1|root,COG1653@2|Bacteria,1MUNZ@1224|Proteobacteria,2TSYG@28211|Alphaproteobacteria,3JQUX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Bacterial extracellular solute-binding protein	smoE	-	-	ko:K02027,ko:K10227	ko02010,map02010	M00200,M00207	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.1,3.A.1.1.5	-	-	SBP_bac_1
SX3_k127_807519_2	1297865.APJD01000023_gene1134	8.395e-198	617.0	COG2390@1|root,COG2390@2|Bacteria,1MWHQ@1224|Proteobacteria,2TSIT@28211|Alphaproteobacteria,3JSTK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Putative sugar-binding domain	smoC	-	-	-	-	-	-	-	-	-	-	-	MarR_2,Sugar-bind
SX3_k127_807519_5	1297865.APJD01000023_gene1135	9.863e-141	447.0	COG0637@1|root,COG0637@2|Bacteria,1NSPA@1224|Proteobacteria,2U0W3@28211|Alphaproteobacteria,3JURV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HAD-hyrolase-like	-	-	-	-	-	-	-	-	-	-	-	-	HAD_2
SX3_k127_807519_0	1297865.APJD01000023_gene1136	1.506e-312	969.0	COG1226@1|root,COG4651@1|root,COG1226@2|Bacteria,COG4651@2|Bacteria,1MV34@1224|Proteobacteria,2TRC5@28211|Alphaproteobacteria,3JVBN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family	ybaL	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	ko:K03455	-	-	-	-	ko00000	2.A.37	-	-	Na_H_Exchanger,TrkA_N
SX3_k127_811528_2	1297865.APJD01000006_gene4566	6.588e-206	641.0	COG0772@1|root,COG0772@2|Bacteria,1MVDB@1224|Proteobacteria,2TQSA@28211|Alphaproteobacteria,3JV9H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	D	Belongs to the SEDS family	ftsW	-	-	ko:K03588	ko04112,map04112	-	-	-	ko00000,ko00001,ko02000,ko03036	2.A.103.1	-	-	FTSW_RODA_SPOVE
SX3_k127_811528_1	1297865.APJD01000006_gene4567	6.102e-220	702.0	COG0707@1|root,COG0707@2|Bacteria,1MVIB@1224|Proteobacteria,2TSEY@28211|Alphaproteobacteria,3JT97@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)	murG	-	2.4.1.227	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	-	R05032,R05662	RC00005,RC00049	ko00000,ko00001,ko01000,ko01011	-	GT28	-	Glyco_tran_28_C,Glyco_transf_28
SX3_k127_811528_4	1297865.APJD01000006_gene4568	2.058e-183	576.0	COG4122@1|root,COG4122@2|Bacteria,1MU1P@1224|Proteobacteria,2U3B6@28211|Alphaproteobacteria,3JVUI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Methyltransferase domain	-	-	-	-	-	-	-	-	-	-	-	-	Methyltransf_24
SX3_k127_811528_0	1297865.APJD01000006_gene4569	2.46e-304	934.0	COG0773@1|root,COG0773@2|Bacteria,1MV68@1224|Proteobacteria,2TRT0@28211|Alphaproteobacteria,3JR1R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the MurCDEF family	murC	-	6.3.2.8	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R03193	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
SX3_k127_811528_5	398525.KB900701_gene6680	4.318e-66	226.0	COG2827@1|root,COG2827@2|Bacteria,1MZME@1224|Proteobacteria,2UCNX@28211|Alphaproteobacteria,3JZKX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Excinuclease ABC, C subunit	-	-	-	ko:K07461	-	-	-	-	ko00000	-	-	-	GIY-YIG
SX3_k127_811528_3	1297865.APJD01000006_gene4570	2.038e-197	616.0	COG0812@1|root,COG0812@2|Bacteria,1MXDH@1224|Proteobacteria,2TRQR@28211|Alphaproteobacteria,3JQP3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Cell wall formation	murB	-	1.3.1.98	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	-	R03191,R03192	RC02639	ko00000,ko00001,ko01000,ko01011	-	-	-	FAD_binding_4,MurB_C
SX3_k127_813797_3	1156935.QWE_07056	1.346e-61	229.0	28IIA@1|root,2Z8JD@2|Bacteria,1R3RS@1224|Proteobacteria,2U09X@28211|Alphaproteobacteria,4B7S5@82115|Rhizobiaceae	28211|Alphaproteobacteria	S	HTH DNA binding domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF1612,HTH_13
SX3_k127_813797_1	196490.AUEZ01000045_gene6838	4.987e-185	589.0	2DKIW@1|root,309MK@2|Bacteria,1RF7C@1224|Proteobacteria,2U6ID@28211|Alphaproteobacteria,3K4UM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	TniQ	-	-	-	-	-	-	-	-	-	-	-	-	TniQ
SX3_k127_813797_2	196490.AUEZ01000045_gene6839	6.882e-163	518.0	COG0464@1|root,COG0464@2|Bacteria,1QWUW@1224|Proteobacteria,2TX64@28211|Alphaproteobacteria,3K2VI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Bacterial TniB protein	-	-	-	-	-	-	-	-	-	-	-	-	TniB
SX3_k127_813797_0	196490.AUEZ01000045_gene6840	5.99e-317	975.0	COG2801@1|root,COG2801@2|Bacteria,1MXCK@1224|Proteobacteria,2TTWU@28211|Alphaproteobacteria,3K1J7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Mu transposase, C-terminal	-	-	-	ko:K07497	-	-	-	-	ko00000	-	-	-	Mu-transpos_C,rve
SX3_k127_813797_4	1429916.X566_00680	8.389e-61	212.0	28IIA@1|root,2Z8JD@2|Bacteria,1R3RS@1224|Proteobacteria,2U09X@28211|Alphaproteobacteria,3JXAJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HTH DNA binding domain	-	-	-	-	-	-	-	-	-	-	-	-	DUF1612,HTH_13
SX3_k127_822056_5	1297865.APJD01000033_gene6955	1.453e-116	381.0	COG1073@1|root,COG1073@2|Bacteria,1R4ZT@1224|Proteobacteria,2U56V@28211|Alphaproteobacteria,3JVW8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	alpha beta	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_822056_0	1297865.APJD01000033_gene6956	1.346e-256	792.0	2BRUM@1|root,32KUU@2|Bacteria,1R4S2@1224|Proteobacteria,2TUH1@28211|Alphaproteobacteria,3JWAI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Putative beta-barrel porin 2	-	-	-	-	-	-	-	-	-	-	-	-	BBP2_2
SX3_k127_822056_7	1297865.APJD01000033_gene6958	9.735e-78	261.0	COG3070@1|root,COG3070@2|Bacteria,1N8X8@1224|Proteobacteria,2V15N@28211|Alphaproteobacteria,3JZVB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	TfoX N-terminal domain	-	-	-	ko:K07343	-	-	-	-	ko00000	-	-	-	TfoX_N
SX3_k127_822056_2	1297865.APJD01000033_gene6959	5.144e-232	726.0	COG2771@1|root,COG2771@2|Bacteria,1R5JB@1224|Proteobacteria,2U1CA@28211|Alphaproteobacteria,3JUIY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE
SX3_k127_822056_3	1297865.APJD01000033_gene6960	3.613e-153	493.0	COG0412@1|root,COG0412@2|Bacteria,1R6AF@1224|Proteobacteria,2U0YG@28211|Alphaproteobacteria,3JVR0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Phospholipase/Carboxylesterase	-	-	3.1.1.45	ko:K01061	ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130	-	R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222	RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686	ko00000,ko00001,ko01000	-	-	-	DLH
SX3_k127_822056_9	1297865.APJD01000033_gene6961	2.565e-48	173.0	2CBFH@1|root,301X3@2|Bacteria,1NA88@1224|Proteobacteria,2UHA9@28211|Alphaproteobacteria,3K1CE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_44740	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_822056_4	1297865.APJD01000033_gene6962	2.57e-138	441.0	COG0625@1|root,COG0625@2|Bacteria,1PBD7@1224|Proteobacteria,2U0HQ@28211|Alphaproteobacteria,3JSA1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Belongs to the GST superfamily	-	-	2.5.1.18	ko:K00799	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418	-	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944	ko00000,ko00001,ko01000,ko02000	1.A.12.2.2,1.A.12.3.2	-	-	GST_C,GST_N,GST_N_3
SX3_k127_822056_6	1297865.APJD01000033_gene6963	4.292e-101	330.0	COG3797@1|root,COG3797@2|Bacteria,1N0SN@1224|Proteobacteria,2VGGI@28211|Alphaproteobacteria,3JRQ0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1697)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1697
SX3_k127_822056_10	172088.AUGA01000001_gene6300	0.0006291	42.0	2EHAM@1|root,33B2H@2|Bacteria,1RAIW@1224|Proteobacteria,2U5TZ@28211|Alphaproteobacteria,3JY03@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_822056_1	1297865.APJD01000033_gene6964	9.363e-253	781.0	COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,2TQN9@28211|Alphaproteobacteria,3JVM1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Pyridoxal-phosphate dependent enzyme	MA20_41440	-	4.3.1.19	ko:K01754	ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230	M00570	R00220,R00996	RC00418,RC02600	ko00000,ko00001,ko00002,ko01000	-	-	-	ACT,ACT_4,PALP
SX3_k127_824781_1	1297865.APJD01000014_gene827	5.984e-239	739.0	COG0747@1|root,COG0747@2|Bacteria,1MWBH@1224|Proteobacteria,2TTF4@28211|Alphaproteobacteria,3JVS3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_824781_0	1297865.APJD01000014_gene826	0.0	1015.0	2BKHB@1|root,32EYB@2|Bacteria,1MYVD@1224|Proteobacteria	1224|Proteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_824781_2	1230476.C207_00510	2.595e-82	278.0	COG1319@1|root,COG1319@2|Bacteria,1RCRH@1224|Proteobacteria,2TU08@28211|Alphaproteobacteria,3JSJE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CO dehydrogenase flavoprotein C-terminal domain	xdhB	-	1.2.5.3	ko:K03519	-	-	R11168	RC02800	ko00000,ko01000	-	-	-	CO_deh_flav_C,FAD_binding_5
SX3_k127_837252_3	323097.Nham_4439	2.755e-145	460.0	COG3504@1|root,COG3504@2|Bacteria,1MVHJ@1224|Proteobacteria,2U07J@28211|Alphaproteobacteria,3JV7J@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Conjugal transfer protein	-	-	-	ko:K03204	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	CagX
SX3_k127_837252_1	504832.OCAR_7703	2.538e-247	767.0	COG2948@1|root,COG2948@2|Bacteria,1MU7U@1224|Proteobacteria,2VEQH@28211|Alphaproteobacteria,3K6CX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Bacterial conjugation TrbI-like protein	-	-	-	ko:K03195,ko:K20533	ko02024,ko03070,map02024,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7,3.A.7.4	-	-	TrbI
SX3_k127_837252_2	1082933.MEA186_30202	1.336e-156	500.0	COG0630@1|root,COG0630@2|Bacteria,1QUJ6@1224|Proteobacteria,2TW2D@28211|Alphaproteobacteria,43RP4@69277|Phyllobacteriaceae	28211|Alphaproteobacteria	NU	Type II/IV secretion system protein	virB11	-	-	ko:K02283,ko:K03196	ko03070,ko05120,map03070,map05120	M00333,M00564	-	-	ko00000,ko00001,ko00002,ko02035,ko02044	3.A.7	-	-	T2SSE
SX3_k127_837252_0	323097.Nham_4436	0.0	1165.0	COG3505@1|root,COG3505@2|Bacteria,1MV1G@1224|Proteobacteria,2TR6N@28211|Alphaproteobacteria,3JRBG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	PFAM TRAG family protein	virD4	-	-	ko:K03205	ko03070,map03070	M00333	-	-	ko00000,ko00001,ko00002,ko02044	3.A.7	-	-	T4SS-DNA_transf
SX3_k127_837252_5	247633.GP2143_01625	6.979e-51	190.0	COG1403@1|root,COG1403@2|Bacteria,1RF87@1224|Proteobacteria,1SBB0@1236|Gammaproteobacteria	1236|Gammaproteobacteria	V	COG1403 Restriction endonuclease	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_837252_4	258594.RPA2566	1.488e-111	378.0	COG3593@1|root,COG3593@2|Bacteria,1QWVB@1224|Proteobacteria,2U87S@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	AAA ATPase domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_21
SX3_k127_84282_8	1297865.APJD01000028_gene5176	5.729e-125	401.0	COG0588@1|root,COG0588@2|Bacteria,1MUVE@1224|Proteobacteria,2TSQ0@28211|Alphaproteobacteria,3JQTI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily	gpmA	GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031	5.4.2.11	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	M00001,M00002,M00003	R01518	RC00536	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	-	-	-	His_Phos_1
SX3_k127_84282_4	1230476.C207_04060	3.079e-159	503.0	COG0289@1|root,COG0289@2|Bacteria,1MUCT@1224|Proteobacteria,2TSFJ@28211|Alphaproteobacteria,3JRSZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate	dapB	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576	1.17.1.8	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R04198,R04199	RC00478	ko00000,ko00001,ko00002,ko01000	-	-	-	DapB_C,DapB_N
SX3_k127_84282_10	1297865.APJD01000028_gene5174	9.266e-59	216.0	COG5470@1|root,COG5470@2|Bacteria,1N7JA@1224|Proteobacteria,2UBQW@28211|Alphaproteobacteria,3JZD7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF1330)	MA20_24570	-	-	-	-	-	-	-	-	-	-	-	DUF1330
SX3_k127_84282_6	1297865.APJD01000028_gene5173	1.968e-129	415.0	COG0284@1|root,COG0284@2|Bacteria,1MW2C@1224|Proteobacteria,2TTB3@28211|Alphaproteobacteria,3JTIS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)	pyrF	GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.1.1.23	ko:K01591	ko00240,ko01100,map00240,map01100	M00051	R00965	RC00409	ko00000,ko00001,ko00002,ko01000	-	-	-	OMPdecase
SX3_k127_84282_9	1297865.APJD01000028_gene5172	1.285e-116	376.0	COG0431@1|root,COG0431@2|Bacteria,1RH7F@1224|Proteobacteria,2TUD4@28211|Alphaproteobacteria,3JSDT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	NADPH-dependent FMN reductase	MA20_24580	-	-	-	-	-	-	-	-	-	-	-	FMN_red
SX3_k127_84282_7	1230476.C207_04056	3.993e-126	404.0	COG3963@1|root,COG3963@2|Bacteria,1N1KB@1224|Proteobacteria,2TVD9@28211|Alphaproteobacteria,3JRWY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Ribosomal RNA adenine dimethylase	pmtA	-	2.1.1.17,2.1.1.71	ko:K00570	ko00564,ko01100,ko01110,map00564,map01100,map01110	M00091	R01320,R02056,R03424	RC00003,RC00060,RC00181,RC00496	ko00000,ko00001,ko00002,ko01000	-	-	-	Methyltransf_25,RrnaAD
SX3_k127_84282_1	1297865.APJD01000028_gene5170	4.753e-246	760.0	COG0484@1|root,COG0484@2|Bacteria,1MVMS@1224|Proteobacteria,2TRZ1@28211|Alphaproteobacteria,3JS0I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	dnaJ	-	-	ko:K03686	-	-	-	-	ko00000,ko03029,ko03110	-	-	-	DnaJ,DnaJ_C,DnaJ_CXXCXGXG
SX3_k127_84282_0	398525.KB900701_gene1531	0.0	1217.0	COG0443@1|root,COG0443@2|Bacteria,1MVEN@1224|Proteobacteria,2TR5H@28211|Alphaproteobacteria,3JQXK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Heat shock 70 kDa protein	dnaK	-	-	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	-	-	-	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	1.A.33.1	-	-	HSP70
SX3_k127_84282_2	1297865.APJD01000028_gene5168	3.048e-193	609.0	28JYF@1|root,2Z9NQ@2|Bacteria,1MXUQ@1224|Proteobacteria,2TS50@28211|Alphaproteobacteria,3JV8F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	MA20_24600	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_84282_5	398525.KB900701_gene1533	4.024e-140	464.0	COG1335@1|root,COG1335@2|Bacteria,1MUGW@1224|Proteobacteria,2TRMB@28211|Alphaproteobacteria,3JUUA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	Q	Isochorismatase family	pncA	-	3.5.1.19	ko:K08281	ko00760,ko01100,map00760,map01100	-	R01268	RC00100	ko00000,ko00001,ko01000	-	-	-	Isochorismatase
SX3_k127_84282_3	1297865.APJD01000028_gene5166	1.505e-166	537.0	COG2207@1|root,COG2207@2|Bacteria,1R4RI@1224|Proteobacteria,2TUMD@28211|Alphaproteobacteria,3JW7S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_18
SX3_k127_84282_11	1297865.APJD01000028_gene5165	5.474e-53	188.0	COG2764@1|root,COG2764@2|Bacteria,1RIZB@1224|Proteobacteria,2U9DC@28211|Alphaproteobacteria,3JYJC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Glyoxalase
SX3_k127_848563_9	864069.MicloDRAFT_00051260	7.475e-05	49.0	2EQ6B@1|root,33HSN@2|Bacteria,1PNGR@1224|Proteobacteria,2V12D@28211|Alphaproteobacteria,1JWMM@119045|Methylobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848563_2	504832.OCAR_6432	4.293e-150	479.0	COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,2TR65@28211|Alphaproteobacteria,3JTI5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	cation efflux	czcD	-	-	ko:K16264	-	-	-	-	ko00000,ko02000	2.A.4.1	-	-	Cation_efflux
SX3_k127_848563_3	883078.HMPREF9695_02410	7.699e-139	445.0	2E54J@1|root,32ZXH@2|Bacteria,1R9DG@1224|Proteobacteria,2U2YG@28211|Alphaproteobacteria,3JR4R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848563_4	323097.Nham_4537	1.528e-93	309.0	2ABTR@1|root,311AB@2|Bacteria,1N1DS@1224|Proteobacteria,2UDB2@28211|Alphaproteobacteria,3K0JZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848563_8	323097.Nham_4536	4.063e-19	91.0	COG2199@1|root,COG3706@2|Bacteria,1MZS0@1224|Proteobacteria,2UDXA@28211|Alphaproteobacteria,3K0EJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	GGDEF domain	-	-	-	-	-	-	-	-	-	-	-	-	PilZ
SX3_k127_848563_7	1297863.APJF01000026_gene3668	5.555e-50	179.0	COG3461@1|root,COG3461@2|Bacteria,1MZZN@1224|Proteobacteria,2UED8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Evidence 4 Homologs of previously reported genes of	-	-	-	ko:K09700	-	-	-	-	ko00000	-	-	-	Rubrerythrin
SX3_k127_848563_1	316057.RPD_3643	0.0	1047.0	COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR56@28211|Alphaproteobacteria,3JRCG@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	E1-E2 ATPase	zntA	GO:0000041,GO:0003674,GO:0003824,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006829,GO:0006950,GO:0008150,GO:0008324,GO:0008551,GO:0009636,GO:0010035,GO:0010038,GO:0010043,GO:0010312,GO:0015075,GO:0015086,GO:0015087,GO:0015094,GO:0015099,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015675,GO:0015691,GO:0015692,GO:0016020,GO:0016021,GO:0016462,GO:0016463,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0034220,GO:0035444,GO:0042221,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044425,GO:0044464,GO:0046686,GO:0046873,GO:0046915,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070574,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0090662,GO:0097501,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0099131,GO:0099132,GO:1990359	3.6.3.3,3.6.3.5	ko:K01534	-	-	-	-	ko00000,ko01000	3.A.3.6	-	-	E1-E2_ATPase,HMA,Hydrolase
SX3_k127_848563_5	1230476.C207_04610	3.577e-57	203.0	2C7C3@1|root,346ZH@2|Bacteria,1MYKN@1224|Proteobacteria,2UAAH@28211|Alphaproteobacteria,3K00S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848563_0	323097.Nham_4533	0.0	1993.0	COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,2TRWM@28211|Alphaproteobacteria,3JRVP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	ko:K15726	-	-	-	-	ko00000,ko02000	2.A.6.1.2	-	-	ACR_tran
SX3_k127_848563_6	883078.HMPREF9695_04442	6.782e-55	194.0	COG0347@1|root,COG0347@2|Bacteria,1RDUD@1224|Proteobacteria,2U8JR@28211|Alphaproteobacteria,3JZ4Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Nitrogen regulatory protein P-II	-	-	-	-	-	-	-	-	-	-	-	-	P-II
SX3_k127_848980_11	1297865.APJD01000003_gene6075	7.064e-178	557.0	COG0846@1|root,COG0846@2|Bacteria,1MUK1@1224|Proteobacteria,2TV1Q@28211|Alphaproteobacteria,3JRAH@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form	-	-	-	-	-	-	-	-	-	-	-	-	SIR2
SX3_k127_848980_12	1297865.APJD01000003_gene6077	1.549e-152	486.0	COG2755@1|root,COG2755@2|Bacteria	2|Bacteria	E	lipolytic protein G-D-S-L family	-	-	3.1.6.14,3.2.1.21	ko:K01137,ko:K05349	ko00460,ko00500,ko00531,ko00940,ko01100,ko01110,ko04142,map00460,map00500,map00531,map00940,map01100,map01110,map04142	M00078,M00079	R00026,R02558,R02887,R02985,R03527,R04949,R04998,R07808,R07819,R10035,R10039,R10040	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248	ko00000,ko00001,ko00002,ko01000	-	GH3	-	Lipase_GDSL_2
SX3_k127_848980_7	1297865.APJD01000003_gene6078	1.376e-231	720.0	COG1652@1|root,COG1652@2|Bacteria,1MWMR@1224|Proteobacteria,2U7UH@28211|Alphaproteobacteria,3JTC2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	NU	Lysin motif	lysM	-	-	-	-	-	-	-	-	-	-	-	LysM
SX3_k127_848980_18	1230476.C207_03947	5.149e-88	292.0	COG1522@1|root,COG1522@2|Bacteria,1RB37@1224|Proteobacteria,2U3NJ@28211|Alphaproteobacteria,3JWNM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix ASNC type	MA20_39555	-	-	ko:K03719	-	-	-	-	ko00000,ko03000,ko03036	-	-	-	AsnC_trans_reg,HTH_24,HTH_AsnC-type
SX3_k127_848980_8	1297865.APJD01000003_gene6080	2.41e-226	701.0	COG2515@1|root,COG2515@2|Bacteria,1MVYF@1224|Proteobacteria,2TRCB@28211|Alphaproteobacteria,3JR3N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source	acdS	-	3.5.99.7,4.4.1.15	ko:K01505,ko:K05396	ko00270,map00270	-	R00997,R01874	RC00382,RC00419	ko00000,ko00001,ko01000	-	-	-	PALP
SX3_k127_848980_22	1297865.APJD01000003_gene6081	2.139e-48	175.0	2ADBN@1|root,31313@2|Bacteria,1N56U@1224|Proteobacteria,2UDPF@28211|Alphaproteobacteria,3K0UQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848980_5	1297865.APJD01000003_gene6082	4.999e-273	842.0	COG0265@1|root,COG0265@2|Bacteria,1MV63@1224|Proteobacteria,2TS54@28211|Alphaproteobacteria,3JSEX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Trypsin	-	-	-	-	-	-	-	-	-	-	-	-	PG_binding_1,Trypsin_2
SX3_k127_848980_9	1297865.APJD01000003_gene6083	9.35e-203	632.0	COG1408@1|root,COG1408@2|Bacteria,1MUH5@1224|Proteobacteria,2U0JR@28211|Alphaproteobacteria,3JWTF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase superfamily domain	-	-	-	ko:K07098	-	-	-	-	ko00000	-	-	-	Metallophos,Metallophos_2
SX3_k127_848980_2	1297865.APJD01000003_gene6084	0.0	1170.0	COG2072@1|root,COG2072@2|Bacteria,1MUQH@1224|Proteobacteria,2TRG4@28211|Alphaproteobacteria,3JRSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Flavin-binding monooxygenase-like	-	-	1.14.13.22	ko:K03379	ko00930,ko01120,ko01220,map00930,map01120,map01220	-	R02231,R06622	RC00662,RC01550	ko00000,ko00001,ko01000	-	-	-	FMO-like,Pyr_redox_3
SX3_k127_848980_6	1297865.APJD01000003_gene6085	6.468e-257	793.0	COG0477@1|root,COG0477@2|Bacteria,1MXZ3@1224|Proteobacteria,2TWH9@28211|Alphaproteobacteria,3JTH3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Transmembrane secretion effector	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1,MFS_3
SX3_k127_848980_14	1297865.APJD01000003_gene6086	1.743e-147	467.0	COG2267@1|root,COG2267@2|Bacteria,1QU41@1224|Proteobacteria,2TVZU@28211|Alphaproteobacteria,3JUM8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_848980_26	1230476.C207_03954	3.154e-14	72.0	2A7SR@1|root,30WRT@2|Bacteria,1N1R6@1224|Proteobacteria,2UD1R@28211|Alphaproteobacteria,3K4BA@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848980_1	1230476.C207_03955	0.0	1215.0	COG0514@1|root,COG0514@2|Bacteria,1MVGG@1224|Proteobacteria,2TS8B@28211|Alphaproteobacteria,3JTFR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	RQC	recQ	GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008270,GO:0009295,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017116,GO:0017117,GO:0030894,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033202,GO:0033554,GO:0034641,GO:0042623,GO:0043138,GO:0043140,GO:0043142,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494,GO:1904949	3.6.4.12	ko:K03654	ko03018,map03018	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,HRDC,Helicase_C,RQC,RecQ_Zn_bind
SX3_k127_848980_4	1297865.APJD01000003_gene6088	7.381e-279	857.0	COG3673@1|root,COG3673@2|Bacteria,1NFRW@1224|Proteobacteria,2TQTY@28211|Alphaproteobacteria,3JQQX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized alpha/beta hydrolase domain (DUF2235)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2235
SX3_k127_848980_17	1297865.APJD01000003_gene6089	2.554e-103	338.0	2BSW2@1|root,32MZP@2|Bacteria,1RB9B@1224|Proteobacteria,2U6KN@28211|Alphaproteobacteria,3JY2P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848980_3	1297865.APJD01000003_gene6090	1.258e-287	884.0	COG3552@1|root,COG3552@2|Bacteria,1MUHH@1224|Proteobacteria,2U05M@28211|Alphaproteobacteria,3JS6A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	VWA domain containing CoxE-like protein	MA20_34745	-	-	ko:K07161	-	-	-	-	ko00000	-	-	-	VWA_CoxE
SX3_k127_848980_15	1297865.APJD01000003_gene6091	6.048e-141	448.0	COG0714@1|root,COG0714@2|Bacteria,1MV5I@1224|Proteobacteria,2TREB@28211|Alphaproteobacteria,3JRBD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain (dynein-related subfamily)	MA20_34740	-	-	-	-	-	-	-	-	-	-	-	AAA_5
SX3_k127_848980_21	398525.KB900701_gene1947	8.374e-50	179.0	COG0714@1|root,COG0714@2|Bacteria,1MV5I@1224|Proteobacteria,2TREB@28211|Alphaproteobacteria,3JRBD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	AAA domain (dynein-related subfamily)	MA20_34740	-	-	-	-	-	-	-	-	-	-	-	AAA_5
SX3_k127_848980_19	1297865.APJD01000003_gene6092	1.327e-52	187.0	2AEF6@1|root,314A6@2|Bacteria,1N9N4@1224|Proteobacteria,2UCWT@28211|Alphaproteobacteria,3K1B8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848980_16	1297865.APJD01000003_gene6093	1.448e-132	424.0	COG1011@1|root,COG1011@2|Bacteria,1Q69X@1224|Proteobacteria,2TTTP@28211|Alphaproteobacteria,3JTMD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Haloacid dehalogenase-like hydrolase	MA20_23095	-	-	ko:K07025	-	-	-	-	ko00000	-	-	-	HAD_2
SX3_k127_848980_13	1297865.APJD01000003_gene6094	4.61e-148	470.0	COG2020@1|root,COG2020@2|Bacteria,1RDC4@1224|Proteobacteria,2TUXA@28211|Alphaproteobacteria,3JU1Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Isoprenylcysteine carboxyl methyltransferase (ICMT) family	-	-	-	-	-	-	-	-	-	-	-	-	PEMT
SX3_k127_848980_20	1230476.C207_03963	5.882e-51	183.0	2A3JD@1|root,30S2F@2|Bacteria,1MYG5@1224|Proteobacteria,2UA2B@28211|Alphaproteobacteria,3JZFY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848980_24	398525.KB900701_gene1951	1.539e-22	98.0	2AHNT@1|root,3180U@2|Bacteria,1NMIP@1224|Proteobacteria,2UMR5@28211|Alphaproteobacteria,3K27S@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848980_23	1230476.C207_03965	7.68e-35	134.0	2A88C@1|root,30X9G@2|Bacteria,1N2P3@1224|Proteobacteria,2UE71@28211|Alphaproteobacteria,3K0MD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_848980_0	1297865.APJD01000003_gene6098	0.0	1580.0	COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,2TT0E@28211|Alphaproteobacteria,3JTSC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	O	Subtilase family	-	-	-	-	-	-	-	-	-	-	-	-	Peptidase_S8
SX3_k127_848980_25	1297865.APJD01000003_gene6099	4.629e-17	80.0	COG2197@1|root,COG2197@2|Bacteria,1NB2U@1224|Proteobacteria,2UH2Z@28211|Alphaproteobacteria,3JX57@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, Lux Regulon	-	-	-	-	-	-	-	-	-	-	-	-	GerE,Response_reg
SX3_k127_865548_3	1230476.C207_01629	9.778e-191	596.0	COG0086@1|root,COG0086@2|Bacteria,1MU3M@1224|Proteobacteria,2TRHV@28211|Alphaproteobacteria,3JQRW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoC	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03046,ko:K13797	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
SX3_k127_865548_0	1297865.APJD01000002_gene4074	0.0	2748.0	COG0085@1|root,COG0085@2|Bacteria,1MUC4@1224|Proteobacteria,2TS7S@28211|Alphaproteobacteria,3JR0M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	rpoB	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234	2.7.7.6	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	M00183	R00435,R00441,R00442,R00443	RC02795	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	-	-	-	RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
SX3_k127_865548_8	1297865.APJD01000002_gene4073	2.036e-65	224.0	COG0222@1|root,COG0222@2|Bacteria,1RGU4@1224|Proteobacteria,2U9FX@28211|Alphaproteobacteria,3JYT4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation	rplL	-	-	ko:K02935	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L12,Ribosomal_L12_N
SX3_k127_865548_6	1230476.C207_01632	6.532e-105	342.0	COG0244@1|root,COG0244@2|Bacteria,1RAN5@1224|Proteobacteria,2U592@28211|Alphaproteobacteria,3JTN9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	rplJ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02864	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L10
SX3_k127_865548_2	1297865.APJD01000002_gene4071	3.228e-202	630.0	COG1052@1|root,COG1052@2|Bacteria,1MWID@1224|Proteobacteria,2U0JS@28211|Alphaproteobacteria,3JRJS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	D-isomer specific 2-hydroxyacid dehydrogenase	MA20_35215	-	1.1.1.26	ko:K00015	ko00630,ko01100,ko01110,ko01120,map00630,map01100,map01110,map01120	-	R00717,R01388	RC00031,RC00042	ko00000,ko00001,ko01000	-	-	-	2-Hacid_dh,2-Hacid_dh_C
SX3_k127_865548_4	172088.AUGA01000021_gene5277	8.515e-136	433.0	COG0081@1|root,COG0081@2|Bacteria,1MUE6@1224|Proteobacteria,2TRXP@28211|Alphaproteobacteria,3JVAW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release	rplA	GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02863	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L1
SX3_k127_865548_7	172088.AUGA01000021_gene5278	6.759e-85	281.0	COG0080@1|root,COG0080@2|Bacteria,1RA2M@1224|Proteobacteria,2U760@28211|Alphaproteobacteria,3JV49@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	rplK	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02867	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L11,Ribosomal_L11_N
SX3_k127_865548_5	1298867.AUES01000002_gene1578	2.181e-107	356.0	COG0250@1|root,COG0250@2|Bacteria,1MU14@1224|Proteobacteria,2TRID@28211|Alphaproteobacteria,3JUEY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Participates in transcription elongation, termination and antitermination	nusG	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141	-	ko:K02601	-	-	-	-	ko00000,ko03009,ko03021	-	-	-	KOW,NusG
SX3_k127_865548_9	1230476.C207_01637	2.501e-64	221.0	COG0690@1|root,COG0690@2|Bacteria,1N75P@1224|Proteobacteria,2UF51@28211|Alphaproteobacteria,3K0CY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation	secE	-	-	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5.1,3.A.5.2	-	-	SecE
SX3_k127_865548_1	1297865.APJD01000002_gene4066	0.0	1077.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JTDD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_18835	-	-	ko:K00666	-	-	-	-	ko00000,ko01000,ko01004	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_865548_10	1297865.APJD01000002_gene4065	5.749e-25	103.0	COG2186@1|root,COG2186@2|Bacteria,1R5KH@1224|Proteobacteria,2TSJE@28211|Alphaproteobacteria,3JSDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	-	-	-	-	-	-	-	-	-	-	-	-	FCD,GntR
SX3_k127_869550_6	1297865.APJD01000019_gene3244	4.692e-185	580.0	COG2301@1|root,COG2301@2|Bacteria,1MW0A@1224|Proteobacteria,2TTC0@28211|Alphaproteobacteria,3JR0H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Belongs to the HpcH HpaI aldolase family	citE	-	3.1.2.30,4.1.3.34	ko:K01644,ko:K14451	ko00630,ko01120,ko01200,ko02020,map00630,map01120,map01200,map02020	M00373	R00362,R10612	RC00004,RC00014,RC00067,RC01118	ko00000,ko00001,ko00002,ko01000	-	-	-	HpcH_HpaI
SX3_k127_869550_12	1297865.APJD01000019_gene3243	5.165e-140	445.0	COG0288@1|root,COG0288@2|Bacteria,1NGFN@1224|Proteobacteria,2TRPD@28211|Alphaproteobacteria,3JRJM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Reversible hydration of carbon dioxide	cynT	-	4.2.1.1	ko:K01673	ko00910,map00910	-	R00132,R10092	RC02807	ko00000,ko00001,ko01000	-	-	-	Pro_CA
SX3_k127_869550_14	1297865.APJD01000019_gene3242	1.267e-115	376.0	COG2862@1|root,COG2862@2|Bacteria,1RANN@1224|Proteobacteria,2TSEF@28211|Alphaproteobacteria,3JTEN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Uncharacterized protein family, UPF0114	yqhA	-	-	-	-	-	-	-	-	-	-	-	UPF0114
SX3_k127_869550_5	1297865.APJD01000019_gene3241	1.147e-224	696.0	COG0136@1|root,COG0136@2|Bacteria,1MUHG@1224|Proteobacteria,2TSRD@28211|Alphaproteobacteria,3JTS8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate	asd	-	1.2.1.11	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	M00016,M00017,M00018,M00033,M00525,M00526,M00527	R02291	RC00684	ko00000,ko00001,ko00002,ko01000	-	-	-	Semialdhyde_dh,Semialdhyde_dhC
SX3_k127_869550_9	1297865.APJD01000019_gene3240	3.446e-171	537.0	2BIMX@1|root,32CUX@2|Bacteria,1QKNA@1224|Proteobacteria,2U0TA@28211|Alphaproteobacteria,3JX4T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_869550_18	1297865.APJD01000019_gene3239	5.639e-82	274.0	2A8WA@1|root,30XZN@2|Bacteria,1RHG7@1224|Proteobacteria,2U9J4@28211|Alphaproteobacteria,3JYW8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_869550_4	1297865.APJD01000019_gene3238	5.48e-234	727.0	COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,2TQKG@28211|Alphaproteobacteria,3JRCP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CE	Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate	leuB	GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.85	ko:K00052	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	M00432,M00535	R00994,R04426,R10052	RC00084,RC00417,RC03036	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	Iso_dh
SX3_k127_869550_10	1297865.APJD01000019_gene3237	4.307e-171	539.0	COG0697@1|root,COG0697@2|Bacteria,1R6SK@1224|Proteobacteria,2U4IR@28211|Alphaproteobacteria,3JWNZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EG	EamA-like transporter family	-	-	-	-	-	-	-	-	-	-	-	-	EamA
SX3_k127_869550_3	1297865.APJD01000019_gene3236	8.439e-241	745.0	COG0477@1|root,COG2814@2|Bacteria,1MW6T@1224|Proteobacteria,2U1KC@28211|Alphaproteobacteria,3JS4N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Uncharacterised MFS-type transporter YbfB	MA20_43585	-	-	-	-	-	-	-	-	-	-	-	MFS_4
SX3_k127_869550_8	1297865.APJD01000019_gene3235	1.045e-175	550.0	COG2041@1|root,COG2041@2|Bacteria,1MUW0@1224|Proteobacteria,2TS40@28211|Alphaproteobacteria,3JSIU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Oxidoreductase molybdopterin binding	MA20_43580	-	-	-	-	-	-	-	-	-	-	-	Oxidored_molyb,TAT_signal
SX3_k127_869550_13	1297865.APJD01000019_gene3234	1.6e-130	417.0	COG4117@1|root,COG4117@2|Bacteria,1MX97@1224|Proteobacteria,2U0ZF@28211|Alphaproteobacteria,3JSZD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Prokaryotic cytochrome b561	MA20_43575	-	-	-	-	-	-	-	-	-	-	-	Ni_hydr_CYTB
SX3_k127_869550_16	1297865.APJD01000019_gene3233	4.542e-104	340.0	COG2335@1|root,COG2335@2|Bacteria,1RD06@1224|Proteobacteria,2U7H5@28211|Alphaproteobacteria,3JU54@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.	MA20_43570	-	-	-	-	-	-	-	-	-	-	-	Fasciclin
SX3_k127_869550_2	1297865.APJD01000019_gene3232	2.011e-310	951.0	COG0477@1|root,COG2814@2|Bacteria,1MWKH@1224|Proteobacteria,2U23N@28211|Alphaproteobacteria,3JU4X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Sugar (and other) transporter	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_869550_11	1230476.C207_04732	1.413e-163	518.0	COG4221@1|root,COG4221@2|Bacteria,1MUF8@1224|Proteobacteria,2TTNG@28211|Alphaproteobacteria,3JQP5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	KR domain	MA20_43565	-	-	-	-	-	-	-	-	-	-	-	adh_short
SX3_k127_869550_1	1297865.APJD01000019_gene3230	0.0	1024.0	COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,2TR2W@28211|Alphaproteobacteria,3JT7T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	AMP-binding enzyme C-terminal domain	MA20_43560	-	-	ko:K18661	ko00280,map00280	-	R03383	RC00004,RC00137	ko00000,ko00001,ko01000	-	-	-	AMP-binding,AMP-binding_C
SX3_k127_869550_17	1230476.C207_04734	3.749e-90	301.0	2CA82@1|root,312BV@2|Bacteria,1N3CZ@1224|Proteobacteria,2UEEF@28211|Alphaproteobacteria,3K0QV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_869550_22	319003.Bra1253DRAFT_06100	0.0001422	45.0	2ACCG@1|root,311XQ@2|Bacteria,1N2IH@1224|Proteobacteria,2UCXM@28211|Alphaproteobacteria,3K05X@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_869550_7	1297865.APJD01000019_gene3228	1.178e-177	562.0	COG0730@1|root,COG0730@2|Bacteria,1R3V4@1224|Proteobacteria,2TRYX@28211|Alphaproteobacteria,3JR8R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Sulfite exporter TauE/SafE	MA20_43555	-	-	ko:K07090	-	-	-	-	ko00000	-	-	-	TauE
SX3_k127_869550_21	172088.AUGA01000018_gene2131	3.151e-09	61.0	COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,2VF1C@28211|Alphaproteobacteria,3JV45@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory helix-turn-helix protein, lysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_869550_19	443598.AUFA01000038_gene5076	8.295e-73	254.0	COG2009@1|root,COG2009@2|Bacteria,1N02N@1224|Proteobacteria,2UC47@28211|Alphaproteobacteria,3JYZ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	succinate dehydrogenase	sdhC	-	-	ko:K00241	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002	-	-	-	Sdh_cyt
SX3_k127_869550_20	1230476.C207_04737	6.123e-68	233.0	COG2142@1|root,COG2142@2|Bacteria,1MZND@1224|Proteobacteria,2UC3G@28211|Alphaproteobacteria,3JYRC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	succinate dehydrogenase	sdhD	-	-	ko:K00242	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00149,M00173	R02164	RC00045	ko00000,ko00001,ko00002	-	-	-	Sdh_cyt
SX3_k127_869550_0	1297865.APJD01000019_gene3225	0.0	1272.0	COG1053@1|root,COG1053@2|Bacteria,1MU5M@1224|Proteobacteria,2TQJA@28211|Alphaproteobacteria,3JR6R@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily	sdhA	-	1.3.5.1,1.3.5.4	ko:K00239	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002,ko01000	-	-	-	FAD_binding_2,Succ_DH_flav_C
SX3_k127_869550_15	1297865.APJD01000019_gene3224	1.905e-111	360.0	COG0479@1|root,COG0479@2|Bacteria,1MVHS@1224|Proteobacteria,2TQYF@28211|Alphaproteobacteria,3JS07@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family	sdhB	-	1.3.5.1,1.3.5.4	ko:K00240	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00149,M00173,M00374,M00376	R02164	RC00045	ko00000,ko00001,ko00002,ko01000	-	-	-	Fer2_3,Fer4_10,Fer4_17,Fer4_8
SX3_k127_87064_1	1297865.APJD01000036_gene1456	2.583e-276	850.0	COG0019@1|root,COG0019@2|Bacteria,1MUA6@1224|Proteobacteria,2TQPB@28211|Alphaproteobacteria,3JU3D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine	lysA	GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.1.1.20	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	M00016,M00525,M00526,M00527	R00451	RC00299	ko00000,ko00001,ko00002,ko01000	-	-	-	Orn_Arg_deC_N,Orn_DAP_Arg_deC
SX3_k127_87064_8	1230476.C207_05122	6.569e-48	173.0	COG5567@1|root,COG5567@2|Bacteria,1NEKY@1224|Proteobacteria,2UHV1@28211|Alphaproteobacteria,3K094@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	N	Prokaryotic lipoprotein-attachment site	-	-	-	-	-	-	-	-	-	-	-	-	LPAM_2
SX3_k127_87064_0	1297865.APJD01000036_gene1454	3.61e-292	902.0	COG0165@1|root,COG0165@2|Bacteria,1MUTU@1224|Proteobacteria,2TR4H@28211|Alphaproteobacteria,3JQV1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	argininosuccinate lyase	argH	GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.3.2.1	ko:K01755	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230	M00029,M00844,M00845	R01086	RC00445,RC00447	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ASL_C2,Lyase_1
SX3_k127_87064_4	1297865.APJD01000036_gene1453	8.835e-143	453.0	COG0526@1|root,COG0526@2|Bacteria,1MZ5J@1224|Proteobacteria,2TR0C@28211|Alphaproteobacteria,3JWDM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CO	Thioredoxin-like	tlpA	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	-	-	-	-	-	-	-	-	-	AhpC-TSA,Redoxin
SX3_k127_87064_10	1297865.APJD01000036_gene1452	4.527e-30	121.0	2AE6A@1|root,31402@2|Bacteria,1N8T1@1224|Proteobacteria,2UGXA@28211|Alphaproteobacteria,3K0W3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	YjfB_motility
SX3_k127_87064_9	1297865.APJD01000036_gene1451	6.862e-39	146.0	COG3655@1|root,COG3655@2|Bacteria,1N6VH@1224|Proteobacteria,2UFAM@28211|Alphaproteobacteria,3K0MQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cro/C1-type HTH DNA-binding domain	-	-	-	ko:K07727	-	-	-	-	ko00000,ko03000	-	-	-	HTH_26
SX3_k127_87064_5	1297865.APJD01000036_gene1450	1.884e-104	342.0	2DR0Z@1|root,339QN@2|Bacteria,1Q1E1@1224|Proteobacteria,2UEP7@28211|Alphaproteobacteria,3K65G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2975)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2975
SX3_k127_87064_7	1297865.APJD01000036_gene1449	8.072e-58	204.0	2AFNM@1|root,315Q5@2|Bacteria,1NEDB@1224|Proteobacteria,2UG19@28211|Alphaproteobacteria,3K418@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_87064_3	1297865.APJD01000036_gene1448	2.336e-169	533.0	COG0583@1|root,COG0583@2|Bacteria,1MVKF@1224|Proteobacteria,2U0G8@28211|Alphaproteobacteria,3JRN4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator, LysR family	-	-	-	-	-	-	-	-	-	-	-	-	HTH_1,LysR_substrate
SX3_k127_87064_6	1297865.APJD01000036_gene1447	4.811e-75	253.0	COG1942@1|root,COG1942@2|Bacteria,1RHA5@1224|Proteobacteria,2U7NN@28211|Alphaproteobacteria,3JZ0E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tautomerase enzyme	-	-	-	-	-	-	-	-	-	-	-	-	Tautomerase_2
SX3_k127_87064_2	1297865.APJD01000036_gene1446	2.022e-258	797.0	COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,2U3JV@28211|Alphaproteobacteria,3JX9A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	DegT/DnrJ/EryC1/StrS aminotransferase family	-	-	-	-	-	-	-	-	-	-	-	-	Aminotran_1_2
SX3_k127_877490_1	1297865.APJD01000036_gene1396	5.321e-167	526.0	COG0523@1|root,COG0523@2|Bacteria,1MVXC@1224|Proteobacteria,2TU5Y@28211|Alphaproteobacteria,3JVAY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Cobalamin synthesis protein cobW C-terminal domain	-	-	-	ko:K02234	-	-	-	-	ko00000,ko00001	-	-	-	CobW_C,cobW
SX3_k127_877490_0	1297865.APJD01000036_gene1397	0.0	1105.0	COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,2TRX3@28211|Alphaproteobacteria,3JT0F@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	TonB-dependent Receptor Plug Domain	-	-	-	ko:K02014	-	-	-	-	ko00000,ko02000	1.B.14	-	-	Plug,TonB_dep_Rec
SX3_k127_906315_0	1297865.APJD01000021_gene3022	2.653e-312	956.0	COG0582@1|root,COG0582@2|Bacteria,1R5SA@1224|Proteobacteria,2U4AI@28211|Alphaproteobacteria,3JU2H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family	-	-	-	-	-	-	-	-	-	-	-	-	Phage_int_SAM_1,Phage_integrase
SX3_k127_906315_1	395963.Bind_2314	3.439e-205	669.0	COG0457@1|root,COG0457@2|Bacteria,1NSC5@1224|Proteobacteria,2UQM8@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	Tetratricopeptide repeat	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_906315_18	441620.Mpop_2510	6.806e-23	102.0	2BW44@1|root,33P7Z@2|Bacteria,1NK8F@1224|Proteobacteria,2UM7M@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_906315_8	441620.Mpop_2511	2.051e-90	310.0	arCOG09511@1|root,2Z9DH@2|Bacteria,1MXRV@1224|Proteobacteria,2UBCS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	S	PFAM FRG domain	-	-	-	-	-	-	-	-	-	-	-	-	FRG
SX3_k127_906315_10	441620.Mpop_2515	4.974e-66	242.0	COG0524@1|root,COG3613@1|root,COG0524@2|Bacteria,COG3613@2|Bacteria,1QA9U@1224|Proteobacteria,2U61H@28211|Alphaproteobacteria,1JX0R@119045|Methylobacteriaceae	28211|Alphaproteobacteria	FG	Nucleoside 2-deoxyribosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Nuc_deoxyrib_tr,PfkB
SX3_k127_906315_22	441620.Mpop_4041	3.083e-17	87.0	2ETQ7@1|root,32MUZ@2|Bacteria,1PPJ5@1224|Proteobacteria,2V20W@28211|Alphaproteobacteria,1JXX2@119045|Methylobacteriaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_906315_9	441620.Mpop_2514	1.703e-82	280.0	COG0603@1|root,COG0603@2|Bacteria,1RG3H@1224|Proteobacteria,2UASU@28211|Alphaproteobacteria,1JXTH@119045|Methylobacteriaceae	28211|Alphaproteobacteria	F	Queuosine biosynthesis protein QueC	-	-	6.3.4.20	ko:K06920	ko00790,ko01100,map00790,map01100	-	R09978	RC00959	ko00000,ko00001,ko01000,ko03016	-	-	-	QueC
SX3_k127_906315_7	441620.Mpop_2515	5.41e-129	426.0	COG0524@1|root,COG3613@1|root,COG0524@2|Bacteria,COG3613@2|Bacteria,1QA9U@1224|Proteobacteria,2U61H@28211|Alphaproteobacteria,1JX0R@119045|Methylobacteriaceae	28211|Alphaproteobacteria	FG	Nucleoside 2-deoxyribosyltransferase	-	-	-	-	-	-	-	-	-	-	-	-	Nuc_deoxyrib_tr,PfkB
SX3_k127_906315_24	441620.Mpop_2513	2.097e-12	72.0	2ETQ7@1|root,33M7W@2|Bacteria,1NK3X@1224|Proteobacteria,2UNFF@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_906315_26	441620.Mpop_2517	2.975e-05	49.0	COG0177@1|root,COG0177@2|Bacteria,1R02I@1224|Proteobacteria,2TYHS@28211|Alphaproteobacteria	28211|Alphaproteobacteria	L	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_906315_14	318996.AXAZ01000025_gene2368	5.939e-34	135.0	2DHXT@1|root,301BC@2|Bacteria,1N70Q@1224|Proteobacteria,2UHQV@28211|Alphaproteobacteria,3K1FY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	HNH nucleases	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_906315_21	652103.Rpdx1_2075	3.75e-20	93.0	COG2944@1|root,COG2944@2|Bacteria,1QYZU@1224|Proteobacteria,2TY2K@28211|Alphaproteobacteria,3K6W4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	HTH_31
SX3_k127_906315_25	1120936.KB907213_gene4942	5.756e-06	52.0	COG3620@1|root,COG3620@2|Bacteria,2HH2D@201174|Actinobacteria,4EQ3T@85012|Streptosporangiales	201174|Actinobacteria	K	Helix-turn-helix domain	-	-	-	-	-	-	-	-	-	-	-	-	HTH_31
SX3_k127_906315_11	1230476.C207_04485	7.168e-65	224.0	COG0599@1|root,COG0599@2|Bacteria,1MZ80@1224|Proteobacteria,2UDE8@28211|Alphaproteobacteria,3JZ0Y@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity	-	-	-	-	-	-	-	-	-	-	-	-	CMD
SX3_k127_906315_16	1230476.C207_04482	3.105e-28	117.0	2BR31@1|root,32K0V@2|Bacteria,1Q2JY@1224|Proteobacteria,2UIPH@28211|Alphaproteobacteria,3K1G6@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF2892)	-	-	-	-	-	-	-	-	-	-	-	-	DUF2892
SX3_k127_906315_23	398525.KB900701_gene270	3.649e-17	82.0	29FRZ@1|root,302PN@2|Bacteria,1NDUI@1224|Proteobacteria,2UHSQ@28211|Alphaproteobacteria,3K1KK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_906315_6	1230476.C207_04478	8.032e-131	419.0	COG0664@1|root,COG0664@2|Bacteria,1MVGE@1224|Proteobacteria,2U36S@28211|Alphaproteobacteria,3JTBY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Crp Fnr family	fixK	-	-	ko:K01420,ko:K15861	ko02020,map02020	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_Crp_2,cNMP_binding
SX3_k127_906315_3	1297865.APJD01000031_gene1615	1.447e-156	495.0	COG0517@1|root,COG0517@2|Bacteria,1NY5H@1224|Proteobacteria,2U1GG@28211|Alphaproteobacteria,3JTNC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	BON domain	-	-	-	-	-	-	-	-	-	-	-	-	BON,CBS
SX3_k127_906315_13	1297865.APJD01000031_gene1614	4.698e-57	202.0	COG2010@1|root,COG2010@2|Bacteria,1N8V1@1224|Proteobacteria,2UG8G@28211|Alphaproteobacteria,3JZPS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Cytochrome c	-	-	-	-	-	-	-	-	-	-	-	-	Cytochrom_C,Cytochrome_CBB3
SX3_k127_906315_2	1297865.APJD01000031_gene1613	5.39e-174	548.0	COG0589@1|root,COG0589@2|Bacteria,1QD8E@1224|Proteobacteria,2TRQ7@28211|Alphaproteobacteria,3JR5P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Belongs to the universal stress protein A family	-	-	-	-	-	-	-	-	-	-	-	-	Usp
SX3_k127_906315_4	1230476.C207_04473	9.471e-139	443.0	COG1028@1|root,COG1028@2|Bacteria,1MUEV@1224|Proteobacteria,2TRCF@28211|Alphaproteobacteria,3JQVE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	1.1.1.36	ko:K00023	ko00630,ko00650,ko01120,ko01200,map00630,map00650,map01120,map01200	M00373	R01779,R01977	RC00103,RC00117	ko00000,ko00001,ko00002,ko01000	-	-	-	adh_short_C2
SX3_k127_906315_12	1297865.APJD01000031_gene1611	3.717e-62	219.0	COG0517@1|root,COG0517@2|Bacteria,1RB0G@1224|Proteobacteria,2U5QI@28211|Alphaproteobacteria,3JYHM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain in cystathionine beta-synthase and other proteins.	-	-	-	-	-	-	-	-	-	-	-	-	CBS
SX3_k127_913628_1	1297865.APJD01000005_gene3965	2.833e-270	832.0	COG0683@1|root,COG0683@2|Bacteria,1MU8V@1224|Proteobacteria,2TS3I@28211|Alphaproteobacteria,3JS37@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K01999	ko02010,ko02024,map02010,map02024	M00237	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4	-	-	Peripla_BP_5
SX3_k127_913628_6	1297865.APJD01000005_gene3966	1.612e-129	417.0	COG3707@1|root,COG3707@2|Bacteria,1RD4V@1224|Proteobacteria,2TVTM@28211|Alphaproteobacteria,3JVJJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	ANTAR	-	-	-	-	-	-	-	-	-	-	-	-	ANTAR
SX3_k127_913628_0	1230476.C207_01956	4.469e-275	849.0	COG0683@1|root,COG0683@2|Bacteria,1MU8V@1224|Proteobacteria,2TS3I@28211|Alphaproteobacteria,3JRX8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K11959	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	Peripla_BP_5,TAT_signal
SX3_k127_913628_4	1297865.APJD01000005_gene3968	4.892e-171	541.0	COG0559@1|root,COG0559@2|Bacteria,1N0NE@1224|Proteobacteria,2TU0M@28211|Alphaproteobacteria,3JX4W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K11960	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
SX3_k127_913628_3	1230476.C207_01958	8.204e-228	713.0	COG4177@1|root,COG4177@2|Bacteria,1NZDF@1224|Proteobacteria,2VF26@28211|Alphaproteobacteria,3K6DT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Branched-chain amino acid transport system / permease component	-	-	-	ko:K11961	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	BPD_transp_2
SX3_k127_913628_5	1297865.APJD01000005_gene3970	3.617e-156	501.0	COG4674@1|root,COG4674@2|Bacteria,1MUBR@1224|Proteobacteria,2TSDN@28211|Alphaproteobacteria,3JSQN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Branched-chain amino acid ATP-binding cassette transporter	-	-	-	ko:K11962	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran,BCA_ABC_TP_C
SX3_k127_913628_8	690585.JNNU01000013_gene3415	1.751e-77	267.0	COG0410@1|root,COG0410@2|Bacteria,1N01B@1224|Proteobacteria,2U1WJ@28211|Alphaproteobacteria,4BBE0@82115|Rhizobiaceae	28211|Alphaproteobacteria	E	ATPases associated with a variety of cellular activities	-	-	-	ko:K11963	ko02010,map02010	M00323	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.4.4,3.A.1.4.5	-	-	ABC_tran
SX3_k127_913628_2	1297865.APJD01000005_gene3972	3.505e-240	741.0	COG0388@1|root,COG0388@2|Bacteria,1MY3W@1224|Proteobacteria,2TTKF@28211|Alphaproteobacteria,3JT3W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide	amiE	-	3.5.1.4	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	-	R02540,R03096,R03180,R03909,R05551,R05590	RC00010,RC00100,RC00950,RC01025	ko00000,ko00001,ko01000	-	-	-	CN_hydrolase
SX3_k127_913628_7	1297865.APJD01000005_gene3973	7.951e-126	406.0	COG1457@1|root,COG1457@2|Bacteria,1NS07@1224|Proteobacteria,2U0TM@28211|Alphaproteobacteria,3JWV3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Permease for cytosine/purines, uracil, thiamine, allantoin	-	-	-	ko:K10974	-	-	-	-	ko00000,ko02000	2.A.39.1	-	-	Transp_cyt_pur
SX3_k127_922157_8	1297865.APJD01000021_gene3052	1.63e-135	432.0	COG3576@1|root,COG3576@2|Bacteria,1MWG9@1224|Proteobacteria,2TSKK@28211|Alphaproteobacteria,3JRNS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Pyridoxamine 5'-phosphate oxidase	MA20_01375	-	-	ko:K07006	-	-	-	-	ko00000	-	-	-	Putative_PNPOx
SX3_k127_922157_3	1297865.APJD01000021_gene3053	0.0	1086.0	COG1123@1|root,COG4172@2|Bacteria,1MU09@1224|Proteobacteria,2TQP0@28211|Alphaproteobacteria,3JRAE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Belongs to the ABC transporter superfamily	-	-	-	ko:K02031,ko:K02032	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	ABC_tran,oligo_HPY
SX3_k127_922157_6	1297865.APJD01000021_gene3054	3.619e-161	527.0	COG1173@1|root,COG1173@2|Bacteria,1MVHY@1224|Proteobacteria,2TQVQ@28211|Alphaproteobacteria,3JS21@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EP	N-terminal TM domain of oligopeptide transport permease C	-	-	-	ko:K02034	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1,OppC_N
SX3_k127_922157_4	1297865.APJD01000021_gene3055	1.156e-188	616.0	COG0601@1|root,COG0601@2|Bacteria,1MU8Z@1224|Proteobacteria,2TQJC@28211|Alphaproteobacteria,3JSJW@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	ko:K02033	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	BPD_transp_1
SX3_k127_922157_2	1297865.APJD01000021_gene3056	0.0	1096.0	COG0747@1|root,COG0747@2|Bacteria,1MUZH@1224|Proteobacteria,2TS14@28211|Alphaproteobacteria,3JQM3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	ko:K02035	ko02024,map02024	M00239	-	-	ko00000,ko00001,ko00002,ko02000	3.A.1.5	-	-	SBP_bac_5
SX3_k127_922157_5	398525.KB900701_gene1863	5.984e-174	549.0	COG0662@1|root,COG2207@1|root,COG0662@2|Bacteria,COG2207@2|Bacteria,1P1FH@1224|Proteobacteria,2TRGB@28211|Alphaproteobacteria,3JXT3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	helix_turn_helix, arabinose operon control protein	-	-	-	-	-	-	-	-	-	-	-	-	AraC_binding,HTH_18
SX3_k127_922157_7	1297865.APJD01000021_gene3058	2.337e-139	445.0	COG0664@1|root,COG0664@2|Bacteria,1MXID@1224|Proteobacteria,2TT42@28211|Alphaproteobacteria,3JTZ2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, crp family	MA20_39330	-	-	ko:K10914	ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111	-	-	-	ko00000,ko00001,ko03000	-	-	-	HTH_Crp_2,cNMP_binding
SX3_k127_922157_1	1297865.APJD01000021_gene3059	0.0	1311.0	COG2982@1|root,COG2982@2|Bacteria,1NVUY@1224|Proteobacteria,2TRSN@28211|Alphaproteobacteria,3JV15@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	AsmA-like C-terminal region	-	-	-	ko:K07289	-	-	-	-	ko00000	-	-	-	AsmA,AsmA_2
SX3_k127_922157_0	1297865.APJD01000021_gene3060	0.0	1568.0	COG2114@1|root,COG3850@1|root,COG2114@2|Bacteria,COG3850@2|Bacteria,1QW6N@1224|Proteobacteria,2TWQ3@28211|Alphaproteobacteria,3JU8D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	4.6.1.1	ko:K01768	ko00230,ko02025,ko04113,ko04213,map00230,map02025,map04113,map04213	M00695	R00089,R00434	RC00295	ko00000,ko00001,ko00002,ko01000	-	-	-	GAF,GAF_2,Guanylate_cyc,HAMP,dCache_1
SX3_k127_922157_9	1230476.C207_03893	1.566e-38	144.0	COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,3K04N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Cold shock protein domain	-	-	-	ko:K03704	-	-	-	-	ko00000,ko03000	-	-	-	CSD
SX3_k127_922157_10	1297865.APJD01000021_gene3062	2.944e-36	138.0	2AGVZ@1|root,3174D@2|Bacteria,1NJ2N@1224|Proteobacteria,2UK1X@28211|Alphaproteobacteria,3K1UQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_935737_5	1230476.C207_00289	2.902e-10	61.0	COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TSUW@28211|Alphaproteobacteria,3JU81@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Domain of unknown function (DUF1974)	fadE	-	-	ko:K06445	ko00071,ko01100,ko01212,map00071,map01100,map01212	M00087	R01175,R01279,R03777,R03857,R03990,R04751,R04754	RC00052,RC00076	ko00000,ko00001,ko00002,ko01000	-	-	-	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N,DUF1974
SX3_k127_935737_1	1297865.APJD01000007_gene1869	7.069e-286	878.0	COG3386@1|root,COG3386@2|Bacteria,1MU0C@1224|Proteobacteria,2TSXG@28211|Alphaproteobacteria,3JTE8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	SMP-30/Gluconolaconase/LRE-like region	MA20_02675	-	3.1.1.17	ko:K01053,ko:K14274	ko00030,ko00040,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,map00030,map00040,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220	M00129	R01519,R02427,R02933,R03751	RC00537,RC00713,RC00983	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	SGL
SX3_k127_935737_3	1297865.APJD01000007_gene1868	4.336e-138	439.0	COG1853@1|root,COG1853@2|Bacteria,1MUPP@1224|Proteobacteria,2TT7S@28211|Alphaproteobacteria,3JRXT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Flavin reductase like domain	MA20_44860	-	-	-	-	-	-	-	-	-	-	-	Flavin_Reduct
SX3_k127_935737_4	1297865.APJD01000007_gene1867	1.081e-129	414.0	COG1309@1|root,COG1309@2|Bacteria,1PZUN@1224|Proteobacteria,2TQY3@28211|Alphaproteobacteria,3JRG4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	MA20_44865	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_935737_0	1297865.APJD01000007_gene1866	0.0	2026.0	COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JTW4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	MA20_44870	-	-	-	-	-	-	-	-	-	-	-	ACR_tran
SX3_k127_935737_2	1297865.APJD01000007_gene1865	2.933e-216	674.0	COG0845@1|root,COG0845@2|Bacteria,1NJDF@1224|Proteobacteria,2TSZA@28211|Alphaproteobacteria,3JQN9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	MA20_44875	-	-	-	-	-	-	-	-	-	-	-	HlyD_3,HlyD_D23
SX3_k127_935737_6	1297865.APJD01000007_gene1864	2.859e-07	51.0	2AH98@1|root,317JC@2|Bacteria,1NJZW@1224|Proteobacteria,2UNIC@28211|Alphaproteobacteria,3K1SI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_936162_5	1297865.APJD01000007_gene1915	5.674e-49	175.0	2EJQP@1|root,33DFH@2|Bacteria,1N78I@1224|Proteobacteria,2UGWD@28211|Alphaproteobacteria,3K1KJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_936162_0	1297865.APJD01000007_gene1916	1.026e-314	964.0	COG1396@1|root,COG3800@1|root,COG1396@2|Bacteria,COG3800@2|Bacteria,1MU50@1224|Proteobacteria,2TRKE@28211|Alphaproteobacteria,3JS27@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	transcriptional regulator, XRE family	MA20_44725	-	-	ko:K07110	-	-	-	-	ko00000,ko03000	-	-	-	DUF2083,HTH_3,HTH_31,Peptidase_M78
SX3_k127_936162_8	224911.27350710	1.32e-09	63.0	COG2224@1|root,COG2224@2|Bacteria,1MWIF@1224|Proteobacteria,2TU0Q@28211|Alphaproteobacteria,3JTR3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Isocitrate lyase	aceA	-	4.1.3.1	ko:K01637	ko00630,ko01100,ko01110,ko01120,ko01200,map00630,map01100,map01110,map01120,map01200	M00012	R00479	RC00311,RC00313	ko00000,ko00001,ko00002,ko01000	-	-	-	ICL
SX3_k127_936162_6	1230476.C207_00319	1.885e-38	143.0	2EQGW@1|root,33I2W@2|Bacteria,1N00S@1224|Proteobacteria,2UCSK@28211|Alphaproteobacteria,3K03E@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	QU41_27540	-	-	-	-	-	-	-	-	-	-	-	DUF4170
SX3_k127_936162_3	1297865.APJD01000007_gene1918	3.565e-115	376.0	28KZ2@1|root,2ZAEF@2|Bacteria,1RAF2@1224|Proteobacteria,2U3QP@28211|Alphaproteobacteria,3JY2Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_936162_2	1297865.APJD01000007_gene1919	1.195e-149	480.0	COG4278@1|root,COG4278@2|Bacteria,1RBTS@1224|Proteobacteria,2U33M@28211|Alphaproteobacteria,3JWV5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	H	phenylacetate-CoA ligase activity	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_936162_1	1297865.APJD01000007_gene1920	3.802e-200	623.0	COG1409@1|root,COG1409@2|Bacteria,1MXD6@1224|Proteobacteria,2TSJ4@28211|Alphaproteobacteria,3JSN9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Calcineurin-like phosphoesterase superfamily domain	-	-	-	-	-	-	-	-	-	-	-	-	Metallophos
SX3_k127_936162_4	1297865.APJD01000007_gene1921	1.33e-101	349.0	COG1051@1|root,COG1051@2|Bacteria,1N0YW@1224|Proteobacteria,2UC2E@28211|Alphaproteobacteria,3JY9M@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Nudix hydrolase	-	-	-	-	-	-	-	-	-	-	-	-	NUDIX
SX3_k127_936162_7	1297865.APJD01000007_gene1922	3.233e-34	132.0	COG3153@1|root,COG3153@2|Bacteria,1RD0C@1224|Proteobacteria,2U7AS@28211|Alphaproteobacteria,3JTBQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Acetyltransferase (GNAT) domain	-	-	-	-	-	-	-	-	-	-	-	-	Acetyltransf_1,Acetyltransf_9
SX3_k127_954724_1	1297865.APJD01000002_gene4077	0.0	1078.0	COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,3JSJZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	ABC transporter transmembrane region	MA20_35245	-	-	ko:K06147	-	-	-	-	ko00000,ko02000	3.A.1.106,3.A.1.109,3.A.1.21	-	-	ABC_membrane,ABC_tran
SX3_k127_954724_3	1297865.APJD01000002_gene4078	3.15e-265	818.0	COG0654@1|root,COG0654@2|Bacteria,1MUEW@1224|Proteobacteria,2TUIB@28211|Alphaproteobacteria,3JU6H@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	CH	FAD binding domain	-	-	-	-	-	-	-	-	-	-	-	-	FAD_binding_3
SX3_k127_954724_18	1297865.APJD01000002_gene4079	7.57e-72	246.0	COG0048@1|root,COG0048@2|Bacteria,1RCWY@1224|Proteobacteria,2U70K@28211|Alphaproteobacteria,3JY1D@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit	rpsL	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02950	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosom_S12_S23
SX3_k127_954724_13	1230476.C207_01624	1.095e-93	308.0	COG0049@1|root,COG0049@2|Bacteria,1MXC8@1224|Proteobacteria,2TSI8@28211|Alphaproteobacteria,3JS8U@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA	rpsG	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02992	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S7
SX3_k127_954724_0	1297865.APJD01000002_gene4081	0.0	1381.0	COG0480@1|root,COG0480@2|Bacteria,1MUCV@1224|Proteobacteria,2TQVI@28211|Alphaproteobacteria,3JS6N@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome	fusA	-	-	ko:K02355	-	-	-	-	ko00000,ko03012,ko03029	-	-	-	EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2
SX3_k127_954724_4	1297865.APJD01000002_gene4082	2.883e-259	799.0	COG0050@1|root,COG0050@2|Bacteria,1MVC0@1224|Proteobacteria,2TQP8@28211|Alphaproteobacteria,3JRYZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis	tuf	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	ko:K02358	-	-	-	-	ko00000,ko03012,ko03029,ko04147	-	-	-	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
SX3_k127_954724_22	666684.AfiDRAFT_3578	5.61e-60	207.0	COG0051@1|root,COG0051@2|Bacteria,1RGWF@1224|Proteobacteria,2U95D@28211|Alphaproteobacteria,3JYY3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Involved in the binding of tRNA to the ribosomes	rpsJ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02946	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S10
SX3_k127_954724_7	1297865.APJD01000002_gene4084	2.164e-149	474.0	COG0087@1|root,COG0087@2|Bacteria,1MUST@1224|Proteobacteria,2TRHB@28211|Alphaproteobacteria,3JRM2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rplC	-	-	ko:K02906	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L3
SX3_k127_954724_9	1297865.APJD01000002_gene4085	1.136e-125	406.0	COG0088@1|root,COG0088@2|Bacteria,1MXPF@1224|Proteobacteria,2TRUT@28211|Alphaproteobacteria,3JSKP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome	rplD	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02926	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L4
SX3_k127_954724_24	398525.KB900701_gene5644	1.32e-55	195.0	COG0089@1|root,COG0089@2|Bacteria,1MZXX@1224|Proteobacteria,2UBQ1@28211|Alphaproteobacteria,3JZGD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome	rplW	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02892	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L23
SX3_k127_954724_5	1230476.C207_01617	1.741e-181	568.0	COG0090@1|root,COG0090@2|Bacteria,1MVTD@1224|Proteobacteria,2TTKD@28211|Alphaproteobacteria,3JQZE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity	rplB	GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02886	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L2,Ribosomal_L2_C
SX3_k127_954724_23	1297865.APJD01000002_gene4088	5.903e-56	195.0	COG0185@1|root,COG0185@2|Bacteria,1RGYX@1224|Proteobacteria,2U95S@28211|Alphaproteobacteria,3JZD9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA	rpsS	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904	-	ko:K02965	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S19
SX3_k127_954724_17	1230476.C207_01615	5.811e-73	246.0	COG0091@1|root,COG0091@2|Bacteria,1RH0W@1224|Proteobacteria,2U96X@28211|Alphaproteobacteria,3JY53@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	rplV	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02890	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L22
SX3_k127_954724_8	1297865.APJD01000002_gene4090	8.911e-146	466.0	COG0092@1|root,COG0092@2|Bacteria,1MUAI@1224|Proteobacteria,2TRZ2@28211|Alphaproteobacteria,3JVAT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation	rpsC	GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02982	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	KH_2,Ribosomal_S3_C
SX3_k127_954724_15	1230476.C207_01613	3.247e-81	271.0	COG0197@1|root,COG0197@2|Bacteria,1RA0Z@1224|Proteobacteria,2U710@28211|Alphaproteobacteria,3JY98@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs	rplP	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904	-	ko:K02878	ko03010,map03010	M00178	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L16
SX3_k127_954724_29	398525.KB900701_gene5638	1.512e-30	126.0	COG0255@1|root,COG0255@2|Bacteria,1N6PR@1224|Proteobacteria,2UF59@28211|Alphaproteobacteria,3K03Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Belongs to the universal ribosomal protein uL29 family	rpmC	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02904	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L29
SX3_k127_954724_26	1230476.C207_01611	3.942e-48	172.0	COG0186@1|root,COG0186@2|Bacteria,1MZIK@1224|Proteobacteria,2UBRF@28211|Alphaproteobacteria,3JZGQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA	rpsQ	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02961	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S17
SX3_k127_954724_20	1038859.AXAU01000011_gene2442	1.002e-70	240.0	COG0093@1|root,COG0093@2|Bacteria,1RCWZ@1224|Proteobacteria,2U743@28211|Alphaproteobacteria,3JYBD@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome	rplN	GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904	-	ko:K02874	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L14
SX3_k127_954724_27	582899.Hden_1028	7.789e-40	153.0	COG0198@1|root,COG0198@2|Bacteria,1MZQD@1224|Proteobacteria,2UC6Y@28211|Alphaproteobacteria,3N73B@45401|Hyphomicrobiaceae	28211|Alphaproteobacteria	J	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit	rplX	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02895	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	KOW,ribosomal_L24
SX3_k127_954724_10	1297865.APJD01000002_gene4096	5.608e-116	377.0	COG0094@1|root,COG0094@2|Bacteria,1MUU9@1224|Proteobacteria,2TQPF@28211|Alphaproteobacteria,3JTZ9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits	rplE	GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02931	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L5,Ribosomal_L5_C
SX3_k127_954724_25	1297865.APJD01000002_gene4097	1.862e-54	192.0	COG0199@1|root,COG0199@2|Bacteria,1MZDT@1224|Proteobacteria,2UC01@28211|Alphaproteobacteria,3JZGR@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	rpsN	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02954	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S14
SX3_k127_954724_16	1297865.APJD01000002_gene4098	8.181e-78	261.0	COG0096@1|root,COG0096@2|Bacteria,1RDG3@1224|Proteobacteria,2U6ZH@28211|Alphaproteobacteria,3JY5V@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	rpsH	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02994	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S8
SX3_k127_954724_12	1297865.APJD01000002_gene4099	1.325e-109	356.0	COG0097@1|root,COG0097@2|Bacteria,1R9YZ@1224|Proteobacteria,2TV09@28211|Alphaproteobacteria,3JS4P@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center	rplF	GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02933	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L6
SX3_k127_954724_21	398525.KB900701_gene5630	9.521e-63	224.0	COG0256@1|root,COG0256@2|Bacteria,1RGY7@1224|Proteobacteria,2U9A6@28211|Alphaproteobacteria,3JYPE@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance	rplR	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904	-	ko:K02881	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L18p
SX3_k127_954724_11	1297865.APJD01000002_gene4101	3.312e-114	369.0	COG0098@1|root,COG0098@2|Bacteria,1MUS4@1224|Proteobacteria,2TSRI@28211|Alphaproteobacteria,3JRKJ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body	rpsE	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02988	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S5,Ribosomal_S5_C
SX3_k127_954724_28	1297865.APJD01000002_gene4102	1.203e-31	124.0	COG1841@1|root,COG1841@2|Bacteria,1PU2S@1224|Proteobacteria,2UF55@28211|Alphaproteobacteria,3K0WI@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	ribosomal protein L30	rpmD	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02907	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L30
SX3_k127_954724_14	1297865.APJD01000002_gene4103	6.132e-91	300.0	COG0200@1|root,COG0200@2|Bacteria,1RDC8@1224|Proteobacteria,2U79D@28211|Alphaproteobacteria,3JSBN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	binds to the 23S rRNA	rplO	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	ko:K02876	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_L27A
SX3_k127_954724_2	1297865.APJD01000002_gene4104	2.182e-281	867.0	COG0201@1|root,COG0201@2|Bacteria,1MVU7@1224|Proteobacteria,2TQMT@28211|Alphaproteobacteria,3JST3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	U	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently	secY	-	-	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	M00335	-	-	ko00000,ko00001,ko00002,ko02044	3.A.5	-	-	SecY
SX3_k127_954724_6	1297865.APJD01000002_gene4105	4.599e-160	507.0	COG0563@1|root,COG0563@2|Bacteria,1MXCZ@1224|Proteobacteria,2TT6A@28211|Alphaproteobacteria,3JRQB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism	adk	-	2.7.4.3	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	M00049	R00127,R01547,R11319	RC00002	ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	ADK,ADK_lid
SX3_k127_954724_19	398525.KB900701_gene5624	3.596e-71	241.0	COG0099@1|root,COG0099@2|Bacteria,1RD1G@1224|Proteobacteria,2U73D@28211|Alphaproteobacteria,3JYTS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	rpsM	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02952	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S13
SX3_k127_954724_30	1038860.AXAP01000085_gene344	7.559e-13	69.0	COG0100@1|root,COG0100@2|Bacteria,1RD0A@1224|Proteobacteria,2U717@28211|Alphaproteobacteria,3JY0A@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome	rpsK	GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	ko:K02948	ko03010,map03010	M00178,M00179	-	-	br01610,ko00000,ko00001,ko00002,ko03011	-	-	-	Ribosomal_S11
SX3_k127_954791_0	1297865.APJD01000020_gene193	2.873e-280	862.0	COG1276@1|root,COG2372@1|root,COG1276@2|Bacteria,COG2372@2|Bacteria,1MXGC@1224|Proteobacteria,2TVGX@28211|Alphaproteobacteria,3JS3T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	CopC domain	ycnJ	-	-	ko:K07245,ko:K14166	-	-	-	-	ko00000,ko02000	9.B.62.1	-	-	CopC,CopD
SX3_k127_954791_1	398525.KB900701_gene5224	1.039e-95	313.0	COG0442@1|root,COG0442@2|Bacteria,1MU7E@1224|Proteobacteria,2TQQ4@28211|Alphaproteobacteria,3JUUQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro)	proS	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	6.1.1.15	ko:K01881	ko00970,map00970	M00359,M00360	R03661	RC00055,RC00523	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	-	-	-	HGTP_anticodon,tRNA-synt_2b
SX3_k127_964118_1	1429916.X566_00760	1.066e-235	739.0	COG1475@1|root,COG1475@2|Bacteria,1Q16F@1224|Proteobacteria,2TUB3@28211|Alphaproteobacteria,3JVS7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	ParB-like nuclease domain	-	-	-	-	-	-	-	-	-	-	-	-	ParBc
SX3_k127_964118_0	1429916.X566_00765	0.0	3111.0	COG0553@1|root,COG0827@1|root,COG4646@1|root,COG0553@2|Bacteria,COG0827@2|Bacteria,COG4646@2|Bacteria,1PGZG@1224|Proteobacteria,2TVEU@28211|Alphaproteobacteria,3JVU9@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	DEAD-like helicases superfamily	-	-	-	-	-	-	-	-	-	-	-	-	Helicase_C,N6_Mtase,ResIII,SNF2_N
SX3_k127_964118_4	1429916.X566_00010	2.458e-76	258.0	28P2F@1|root,31W9B@2|Bacteria,1Q0E6@1224|Proteobacteria,2VENU@28211|Alphaproteobacteria,3K5F3@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF3085)	-	-	-	-	-	-	-	-	-	-	-	-	DUF3085
SX3_k127_964118_2	1429916.X566_00015	8.004e-126	403.0	28M5I@1|root,2ZAJA@2|Bacteria,1R4JP@1224|Proteobacteria,2U05N@28211|Alphaproteobacteria,3JW0Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1419)	-	-	-	-	-	-	-	-	-	-	-	-	DUF1419
SX3_k127_964118_3	1429916.X566_00040	3.258e-96	319.0	2BXJY@1|root,32R1H@2|Bacteria,1R6DI@1224|Proteobacteria,2U5TS@28211|Alphaproteobacteria,3JYDY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_964118_5	999541.bgla_1g18910	5.541e-40	154.0	COG1733@1|root,COG1733@2|Bacteria,1RF0R@1224|Proteobacteria,2VV10@28216|Betaproteobacteria,1K7HB@119060|Burkholderiaceae	28216|Betaproteobacteria	K	HxlR-like helix-turn-helix	-	-	-	-	-	-	-	-	-	-	-	-	HxlR
SX3_k127_964118_6	633149.Bresu_1764	1.364e-11	68.0	COG1024@1|root,COG1024@2|Bacteria,1PJ4R@1224|Proteobacteria,2TSSU@28211|Alphaproteobacteria,2KFK9@204458|Caulobacterales	204458|Caulobacterales	I	PFAM Enoyl-CoA hydratase isomerase	-	-	4.2.1.17	ko:K01692	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212	M00032,M00087	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115	ko00000,ko00001,ko00002,ko01000	-	-	-	ECH_1
SX3_k127_968376_5	1230476.C207_03447	2.337e-181	568.0	COG3023@1|root,COG3023@2|Bacteria,1RDHU@1224|Proteobacteria,2TSW3@28211|Alphaproteobacteria,3JSSX@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	N-acetylmuramoyl-L-alanine amidase (Family 2)	amiD	-	3.5.1.28	ko:K01447,ko:K03806	-	-	R04112	RC00064,RC00141	ko00000,ko01000,ko01011	-	-	-	Amidase_2,PG_binding_1
SX3_k127_968376_4	1297865.APJD01000006_gene4559	1.876e-204	642.0	COG0275@1|root,COG0275@2|Bacteria,1MUT4@1224|Proteobacteria,2TRQA@28211|Alphaproteobacteria,3JT8T@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA	rsmH	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.199	ko:K03438	-	-	-	-	ko00000,ko01000,ko03009	-	-	-	Methyltransf_5
SX3_k127_968376_6	1297865.APJD01000006_gene4560	6.282e-84	286.0	COG5462@1|root,COG5462@2|Bacteria,1RBGN@1224|Proteobacteria,2U75N@28211|Alphaproteobacteria,3JY94@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	secreted (periplasmic) protein	MA20_01770	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_968376_0	1297865.APJD01000006_gene4561	0.0	1180.0	COG0768@1|root,COG0768@2|Bacteria,1MUNY@1224|Proteobacteria,2TSHQ@28211|Alphaproteobacteria,3JSUN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Penicillin-binding Protein	ftsI	-	3.4.16.4	ko:K03587	ko00550,ko01501,map00550,map01501	-	-	-	ko00000,ko00001,ko01000,ko01011,ko03036	-	-	-	PBP_dimer,Transpeptidase
SX3_k127_968376_1	1297865.APJD01000006_gene4562	3.795e-304	949.0	COG0769@1|root,COG0769@2|Bacteria,1MU6P@1224|Proteobacteria,2TVXI@28211|Alphaproteobacteria,3JS79@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan	murE	-	6.3.2.13	ko:K01928	ko00300,ko00550,map00300,map00550	-	R02788	RC00064,RC00090	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
SX3_k127_968376_2	1297865.APJD01000006_gene4563	3.871e-295	919.0	COG0770@1|root,COG0770@2|Bacteria,1QTSF@1224|Proteobacteria,2TR0Q@28211|Alphaproteobacteria,3JT30@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein	murF	-	6.3.2.10,6.3.2.13	ko:K01928,ko:K01929,ko:K15792	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	-	R02788,R04573,R04617	RC00064,RC00090,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase,Mur_ligase_C,Mur_ligase_M
SX3_k127_968376_3	1297865.APJD01000006_gene4564	3.789e-235	728.0	COG0472@1|root,COG0472@2|Bacteria,1MUTK@1224|Proteobacteria,2TRUG@28211|Alphaproteobacteria,3JSUT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan	mraY	-	2.7.8.13	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	-	R05629,R05630	RC00002,RC02753	ko00000,ko00001,ko01000,ko01011	9.B.146	-	-	Glycos_transf_4,MraY_sig1
SX3_k127_968376_7	1297865.APJD01000006_gene4565	2.126e-26	120.0	COG0771@1|root,COG0771@2|Bacteria,1MVYD@1224|Proteobacteria,2TTE8@28211|Alphaproteobacteria,3JSWK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)	murD	-	6.3.2.9	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	-	R02783	RC00064,RC00141	ko00000,ko00001,ko01000,ko01011	-	-	-	Mur_ligase_C,Mur_ligase_M
SX3_k127_981096_1	1297865.APJD01000010_gene4930	6.464e-272	837.0	COG0745@1|root,COG2199@1|root,COG0745@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,2TQQM@28211|Alphaproteobacteria,3JRN7@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	T	Response regulator receiver	pleD	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464	2.7.7.65	ko:K02488	ko02020,ko04112,map02020,map04112	M00511	R08057	-	ko00000,ko00001,ko00002,ko01000,ko02022	-	-	-	GGDEF,Response_reg
SX3_k127_981096_3	1297865.APJD01000010_gene4931	2.17e-164	519.0	COG1414@1|root,COG1414@2|Bacteria,1QRZN@1224|Proteobacteria,2UDNG@28211|Alphaproteobacteria	28211|Alphaproteobacteria	K	IclR helix-turn-helix domain	-	-	-	ko:K05818	-	-	-	-	ko00000,ko03000	-	-	-	HTH_IclR,IclR
SX3_k127_981096_0	1297865.APJD01000010_gene4932	3.653e-314	963.0	COG3119@1|root,COG3119@2|Bacteria,1MUJH@1224|Proteobacteria,2TSB8@28211|Alphaproteobacteria,3JXU5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	P	Sulfatase	-	-	-	-	-	-	-	-	-	-	-	-	Sulfatase
SX3_k127_981096_2	1297865.APJD01000010_gene4933	1.851e-265	825.0	COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,2U2BY@28211|Alphaproteobacteria,3JVAK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	V	Beta-lactamase	MA20_27795	-	-	-	-	-	-	-	-	-	-	-	Beta-lactamase
SX3_k127_981096_5	1297865.APJD01000010_gene4934	4.16e-116	376.0	COG1309@1|root,COG1309@2|Bacteria,1R67Z@1224|Proteobacteria,2VF1G@28211|Alphaproteobacteria,3JUFF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_981096_4	1297865.APJD01000010_gene4935	2.938e-144	460.0	COG0477@1|root,COG2814@2|Bacteria,1MVHG@1224|Proteobacteria,2TRA4@28211|Alphaproteobacteria,3JSPN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	EGP	Major Facilitator Superfamily	MA20_36250	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_987871_2	1297865.APJD01000016_gene3384	2.7e-322	989.0	COG3203@1|root,COG3203@2|Bacteria,1MXN6@1224|Proteobacteria,2TSH7@28211|Alphaproteobacteria,3JQSQ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	ropAch1	-	-	-	-	-	-	-	-	-	-	-	Porin_2
SX3_k127_987871_17	318996.AXAZ01000109_gene4928	1.426e-15	78.0	COG1813@1|root,COG1813@2|Bacteria,1QU3A@1224|Proteobacteria,2TVXJ@28211|Alphaproteobacteria,3K6NU@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Helix-turn-helix XRE-family like proteins	-	-	-	-	-	-	-	-	-	-	-	-	Cupin_2,HTH_3
SX3_k127_987871_18	1038866.KB902791_gene3405	3.441e-10	64.0	COG3598@1|root,COG3598@2|Bacteria,1R5TK@1224|Proteobacteria,2TZF9@28211|Alphaproteobacteria,3JWTM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	AAA domain	-	-	-	-	-	-	-	-	-	-	-	-	AAA_25
SX3_k127_987871_16	395963.Bind_2095	6.711e-56	199.0	COG3193@1|root,COG3193@2|Bacteria,1N08N@1224|Proteobacteria,2U5ES@28211|Alphaproteobacteria,3NCGK@45404|Beijerinckiaceae	28211|Alphaproteobacteria	S	Haem-degrading	MA20_43165	-	-	-	-	-	-	-	-	-	-	-	Haem_degrading
SX3_k127_987871_0	1297865.APJD01000016_gene3387	0.0	2018.0	COG0247@1|root,COG0277@1|root,COG0247@2|Bacteria,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,2TSN5@28211|Alphaproteobacteria,3JUXZ@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	4Fe-4S dicluster domain	MA20_43170	-	-	-	-	-	-	-	-	-	-	-	CCG,FAD-oxidase_C,FAD_binding_4,Fer4_8
SX3_k127_987871_14	1297865.APJD01000016_gene3388	1.772e-150	500.0	COG1802@1|root,COG1802@2|Bacteria,1N7GE@1224|Proteobacteria,2TRBH@28211|Alphaproteobacteria,3JUUF@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	FCD	MA20_43175	-	-	ko:K11475	-	-	-	-	ko00000,ko03000	-	-	-	FCD,GntR
SX3_k127_987871_8	1230476.C207_01223	3.657e-252	779.0	COG0075@1|root,COG0075@2|Bacteria,1MWHJ@1224|Proteobacteria,2TQSN@28211|Alphaproteobacteria,3JRV2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-V	MA20_43180	-	2.6.1.44,2.6.1.45,2.6.1.51	ko:K00830	ko00250,ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00250,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map04146	M00346,M00532	R00369,R00372,R00585,R00588	RC00006,RC00008,RC00018	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_5
SX3_k127_987871_5	1297865.APJD01000016_gene3390	2.037e-284	874.0	COG2271@1|root,COG2271@2|Bacteria,1MVPS@1224|Proteobacteria,2TTHW@28211|Alphaproteobacteria,3JU2W@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	G	Major Facilitator Superfamily	-	-	-	-	-	-	-	-	-	-	-	-	MFS_1
SX3_k127_987871_7	1297865.APJD01000016_gene3391	1.58e-262	824.0	COG0075@1|root,COG0075@2|Bacteria,1MWHJ@1224|Proteobacteria,2TQSN@28211|Alphaproteobacteria,3JRV2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Aminotransferase class-V	MA20_43190	-	2.6.1.44,2.6.1.45,2.6.1.51	ko:K00830	ko00250,ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00250,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map04146	M00346,M00532	R00369,R00372,R00585,R00588	RC00006,RC00008,RC00018	ko00000,ko00001,ko00002,ko01000,ko01007	-	-	-	Aminotran_5
SX3_k127_987871_13	1297865.APJD01000016_gene3392	4.588e-164	517.0	COG1024@1|root,COG1024@2|Bacteria,1MXBB@1224|Proteobacteria,2TSPM@28211|Alphaproteobacteria,3JSMT@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Enoyl-CoA hydratase/isomerase	-	-	-	-	-	-	-	-	-	-	-	-	ECH_1
SX3_k127_987871_11	1230476.C207_01227	1.296e-205	640.0	COG3181@1|root,COG3181@2|Bacteria,1MXEX@1224|Proteobacteria,2TT5Y@28211|Alphaproteobacteria,3JUU2@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter family receptor	MA20_43200	-	-	-	-	-	-	-	-	-	-	-	TctC
SX3_k127_987871_12	1297865.APJD01000016_gene3394	3.581e-187	588.0	COG0005@1|root,COG0005@2|Bacteria,1MUWW@1224|Proteobacteria,2TSN3@28211|Alphaproteobacteria,3JS3B@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	F	Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates	mtnP	-	2.4.2.28	ko:K00772	ko00270,ko01100,map00270,map01100	M00034	R01402	RC00063,RC02819	ko00000,ko00001,ko00002,ko01000	-	-	-	PNP_UDP_1
SX3_k127_987871_9	1297865.APJD01000016_gene3395	3.974e-237	737.0	COG0182@1|root,COG0182@2|Bacteria,1MUPM@1224|Proteobacteria,2TSPP@28211|Alphaproteobacteria,3JQQS@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	J	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)	mtnA	-	5.3.1.23	ko:K08963	ko00270,ko01100,map00270,map01100	M00034	R04420	RC01151	ko00000,ko00001,ko00002,ko01000	-	-	-	IF-2B
SX3_k127_987871_15	1297865.APJD01000016_gene3396	3.105e-108	352.0	2BKYI@1|root,32FF5@2|Bacteria,1MY1A@1224|Proteobacteria,2U1KI@28211|Alphaproteobacteria,3JRGN@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctB family	-	-	-	-	-	-	-	-	-	-	-	-	TctB
SX3_k127_987871_3	1297865.APJD01000016_gene3397	2.34e-320	983.0	COG3333@1|root,COG3333@2|Bacteria,1MUKR@1224|Proteobacteria,2TR4Q@28211|Alphaproteobacteria,3JT7G@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Tripartite tricarboxylate transporter TctA family	MA20_43210	-	-	ko:K07793	ko02020,map02020	-	-	-	ko00000,ko00001,ko02000	2.A.80.1	-	-	TctA
SX3_k127_987871_6	1297865.APJD01000016_gene3398	1.233e-263	812.0	COG1804@1|root,COG1804@2|Bacteria,1MU2K@1224|Proteobacteria,2TR7Q@28211|Alphaproteobacteria,3JT4Z@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	CoA-transferase family III	MA20_43260	-	2.8.3.16	ko:K07749	-	-	-	-	ko00000,ko01000	-	-	-	CoA_transf_3
SX3_k127_987871_4	1297865.APJD01000016_gene3399	1.228e-319	986.0	COG2244@1|root,COG2244@2|Bacteria,1R5GK@1224|Proteobacteria,2U37N@28211|Alphaproteobacteria,3JWJ4@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Polysaccharide biosynthesis protein	-	-	-	-	-	-	-	-	-	-	-	-	Polysacc_synt,Polysacc_synt_3,Polysacc_synt_C
SX3_k127_987871_10	1297865.APJD01000016_gene3400	5.878e-236	742.0	COG0367@1|root,COG0367@2|Bacteria,1MW4E@1224|Proteobacteria,2TSCY@28211|Alphaproteobacteria,3JS0Q@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	E	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	6.3.5.4	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	-	R00578	RC00010	ko00000,ko00001,ko01000,ko01002	-	-	-	Asn_synthase,GATase_7
SX3_k127_992709_4	395492.Rleg2_4934	4.353e-09	59.0	2AJHU@1|root,31A4G@2|Bacteria,1NVI4@1224|Proteobacteria,2URBB@28211|Alphaproteobacteria	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_992709_0	1297865.APJD01000003_gene6268	0.0	1393.0	COG0457@1|root,COG0859@1|root,COG0457@2|Bacteria,COG0859@2|Bacteria,1MUZK@1224|Proteobacteria,2TS0U@28211|Alphaproteobacteria,3JRSC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	M	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	-	-	-	-	-	-	-	-	-	Glyco_transf_9,TPR_1,TPR_11,TPR_16,TPR_2,TPR_8
SX3_k127_992709_1	1297865.APJD01000003_gene6267	3.505e-118	381.0	COG1309@1|root,COG1309@2|Bacteria,1NB71@1224|Proteobacteria,2UBX7@28211|Alphaproteobacteria,3K4F8@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Bacterial regulatory proteins, tetR family	-	-	-	-	-	-	-	-	-	-	-	-	TetR_N
SX3_k127_992709_2	1297865.APJD01000003_gene6265	1.9e-103	341.0	COG1028@1|root,COG1028@2|Bacteria,1MXNY@1224|Proteobacteria,2U126@28211|Alphaproteobacteria,3JUEP@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	Enoyl-(Acyl carrier protein) reductase	-	-	-	-	-	-	-	-	-	-	-	-	adh_short_C2
SX3_k127_992709_3	1297865.APJD01000003_gene6264	3.034e-19	87.0	COG1959@1|root,COG1959@2|Bacteria,1RGVW@1224|Proteobacteria,2UA5C@28211|Alphaproteobacteria,3JYGC@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	K	Transcriptional regulator	-	-	-	-	-	-	-	-	-	-	-	-	Rrf2
SX3_k127_997154_10	1297865.APJD01000019_gene3289	5.997e-72	243.0	COG0045@1|root,COG0045@2|Bacteria,1MVCE@1224|Proteobacteria,2TRXK@28211|Alphaproteobacteria,3JRMM@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit	sucC	GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	6.2.1.5	ko:K01903	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	ATP-grasp_2,Ligase_CoA
SX3_k127_997154_8	1297865.APJD01000019_gene3290	4.963e-103	342.0	2CGEX@1|root,32U4B@2|Bacteria,1MWWW@1224|Proteobacteria,2TT01@28211|Alphaproteobacteria,3JSQK@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Protein of unknown function (DUF1579)	MA20_43845	-	-	-	-	-	-	-	-	-	-	-	DUF1579
SX3_k127_997154_4	1297865.APJD01000019_gene3291	8.543e-185	578.0	COG0074@1|root,COG0074@2|Bacteria,1MUGA@1224|Proteobacteria,2TQKB@28211|Alphaproteobacteria,3JRGB@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit	sucD	-	6.2.1.5	ko:K01902	ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00173,M00374,M00620	R00405,R02404	RC00004,RC00014	ko00000,ko00001,ko00002,ko01000	-	-	-	CoA_binding,Ligase_CoA
SX3_k127_997154_0	1297865.APJD01000019_gene3292	0.0	2035.0	COG0567@1|root,COG0567@2|Bacteria,1MVBF@1224|Proteobacteria,2TRBQ@28211|Alphaproteobacteria,3JRD5@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	E1 component	sucA	-	1.2.4.2	ko:K00164	ko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00032	R00621,R01933,R01940,R03316,R08549	RC00004,RC00027,RC00627,RC02743,RC02833,RC02883	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr
SX3_k127_997154_2	1297865.APJD01000019_gene3293	1.006e-263	816.0	COG0508@1|root,COG0508@2|Bacteria,1MUJD@1224|Proteobacteria,2TS5N@28211|Alphaproteobacteria,3JR1I@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2)	sucB	-	2.3.1.61	ko:K00658	ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00032	R02570,R02571,R08549	RC00004,RC02727,RC02833	br01601,ko00000,ko00001,ko00002,ko01000	-	-	-	2-oxoacid_dh,Biotin_lipoyl,E3_binding
SX3_k127_997154_5	1297865.APJD01000019_gene3294	4.433e-152	482.0	COG1028@1|root,COG1028@2|Bacteria,1MW9A@1224|Proteobacteria,2TRFW@28211|Alphaproteobacteria,3JQVV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	IQ	KR domain	ygfF	-	1.1.1.47	ko:K00034	ko00030,ko01120,ko01200,map00030,map01120,map01200	-	R01520,R01521	RC00066	ko00000,ko00001,ko01000	-	-	-	adh_short_C2
SX3_k127_997154_1	1297865.APJD01000019_gene3295	2.87e-299	921.0	COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,2TRN7@28211|Alphaproteobacteria,3JSW1@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	C	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	lpdA	GO:0000166,GO:0003674,GO:0003824,GO:0004148,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009507,GO:0009536,GO:0010035,GO:0010038,GO:0016020,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0017076,GO:0019866,GO:0030554,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0050896,GO:0050897,GO:0055114,GO:0070469,GO:0097159,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204	1.8.1.4	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	M00009,M00011,M00036,M00307,M00532	R00209,R01221,R01698,R03815,R07618,R08549	RC00004,RC00022,RC00583,RC02742,RC02833,RC02834	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	-	-	-	Pyr_redox_2,Pyr_redox_dim
SX3_k127_997154_11	172088.AUGA01000067_gene6883	0.0001351	46.0	COG2267@1|root,COG2267@2|Bacteria,1RCQT@1224|Proteobacteria,2U67H@28211|Alphaproteobacteria,3JYA0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	I	Alpha/beta hydrolase family	-	-	-	-	-	-	-	-	-	-	-	-	Abhydrolase_6
SX3_k127_997154_7	1297865.APJD01000019_gene3296	2.539e-107	349.0	2DC8Y@1|root,32TZ7@2|Bacteria,1Q7ZX@1224|Proteobacteria,2TT5D@28211|Alphaproteobacteria,3JVFY@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
SX3_k127_997154_6	1230476.C207_04659	8.663e-108	352.0	2BNSJ@1|root,32HG4@2|Bacteria,1MV5R@1224|Proteobacteria,2U1AN@28211|Alphaproteobacteria,3JTG0@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	S	Domain of unknown function (DUF4337)	MA20_43880	-	-	-	-	-	-	-	-	-	-	-	DUF4337
SX3_k127_997154_3	1297865.APJD01000019_gene3298	5.36e-205	640.0	COG4973@1|root,COG4973@2|Bacteria,1MUJJ@1224|Proteobacteria,2TVZJ@28211|Alphaproteobacteria,3JRCV@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Belongs to the 'phage' integrase family. XerC subfamily	xerC	-	-	ko:K03733	-	-	-	-	ko00000,ko03036	-	-	-	Phage_int_SAM_1,Phage_integrase
SX3_k127_997154_9	172088.AUGA01000018_gene2208	3.201e-82	274.0	COG1198@1|root,COG1198@2|Bacteria,1MUUZ@1224|Proteobacteria,2TQTQ@28211|Alphaproteobacteria,3JSST@41294|Bradyrhizobiaceae	28211|Alphaproteobacteria	L	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA	priA	-	-	ko:K04066	ko03440,map03440	-	-	-	ko00000,ko00001,ko01000,ko03400	-	-	-	DEAD,Helicase_C
## 7648 queries scanned
## Total time (seconds): 93.12514758110046
## Rate: 82.13 q/s