## Sat Dec 13 17:24:24 2025 ## emapper-2.1.13 ## /data/anaconda3/envs/eggnog-mapper/bin/emapper.py -i /data/result/bins/wyx/qs/new/SRR25158195_bin.1.fa -m mmseqs --itype genome -o SRR25158195_bin.1 --output_dir /data/result/bins/wyx/egg/SRR25158195_bin.1 --cpu 32 ## #query seed_ortholog evalue score eggNOG_OGs max_annot_lvl COG_category Description Preferred_name GOs EC KEGG_ko KEGG_Pathway KEGG_Module KEGG_Reaction KEGG_rclass BRITE KEGG_TC CAZy BiGG_Reaction PFAMs SRR25158195_k127_1008148_2 1429851.X548_00900 4.853e-32 124.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1X2YV@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1008148_0 522373.Smlt0603 0.0 1578.0 COG2866@1|root,COG2866@2|Bacteria,1N9W9@1224|Proteobacteria,1RPC7@1236|Gammaproteobacteria,1X51W@135614|Xanthomonadales 135614|Xanthomonadales M Zinc carboxypeptidase - - - - - - - - - - - - Peptidase_M14 SRR25158195_k127_1008148_1 1123073.KB899242_gene1456 2.759e-175 561.0 COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,1RMWA@1236|Gammaproteobacteria,1X3UF@135614|Xanthomonadales 135614|Xanthomonadales JKL Belongs to the DEAD box helicase family rhlE - 3.6.4.13 ko:K11927 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - DEAD,Helicase_C SRR25158195_k127_1017264_4 1429851.X548_07335 3.586e-84 282.0 29PI0@1|root,30AG5@2|Bacteria,1RHUZ@1224|Proteobacteria,1SB74@1236|Gammaproteobacteria,1X905@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1017264_1 391008.Smal_1691 4.739e-227 707.0 2CIK0@1|root,3132R@2|Bacteria,1QCTK@1224|Proteobacteria,1SNPE@1236|Gammaproteobacteria,1XAWB@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1017264_2 391008.Smal_1692 2.093e-202 631.0 COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,1RP9W@1236|Gammaproteobacteria,1X532@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator ftrA - - ko:K13633 - - - - ko00000,ko03000 - - - DJ-1_PfpI,HTH_18 SRR25158195_k127_1017264_0 391008.Smal_1693 0.0 1622.0 COG1629@1|root,COG4771@2|Bacteria,1MUNK@1224|Proteobacteria,1RN9S@1236|Gammaproteobacteria,1X9QB@135614|Xanthomonadales 135614|Xanthomonadales M TonB-dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1017264_3 1429851.X548_07355 1.2e-91 308.0 COG0431@1|root,COG0431@2|Bacteria,1MX40@1224|Proteobacteria,1RQGZ@1236|Gammaproteobacteria,1XC00@135614|Xanthomonadales 135614|Xanthomonadales S Flavodoxin-like fold - - 1.5.1.38 ko:K00299 ko00740,ko00920,ko01100,map00740,map00920,map01100 - R05706,R07210,R10206 RC00126,RC01779,RC02556 ko00000,ko00001,ko01000 - - - FMN_red SRR25158195_k127_1018263_2 522373.Smlt2226 1.246e-23 101.0 COG3279@1|root,COG3279@2|Bacteria,1R90R@1224|Proteobacteria,1S3H3@1236|Gammaproteobacteria,1X65V@135614|Xanthomonadales 135614|Xanthomonadales KT LytTr DNA-binding domain rpfD - - - - - - - - - - - LytTR SRR25158195_k127_1018263_0 391008.Smal_1821 2.191e-221 693.0 COG1835@1|root,COG1835@2|Bacteria,1N4D5@1224|Proteobacteria,1RREK@1236|Gammaproteobacteria,1XD42@135614|Xanthomonadales 135614|Xanthomonadales I Acyltransferase family - - - - - - - - - - - - Acyl_transf_3 SRR25158195_k127_1018263_1 391008.Smal_1819 3.395e-181 568.0 COG0457@1|root,COG4676@1|root,COG0457@2|Bacteria,COG4676@2|Bacteria,1R801@1224|Proteobacteria,1RYMC@1236|Gammaproteobacteria,1X54P@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized protein conserved in bacteria (DUF2135) - - - - - - - - - - - - DUF2135,VIT SRR25158195_k127_1021101_0 1049564.TevJSym_ac02060 1.056e-238 753.0 COG0568@1|root,COG0568@2|Bacteria,1MVNJ@1224|Proteobacteria,1RMQI@1236|Gammaproteobacteria,1J4NF@118884|unclassified Gammaproteobacteria 1236|Gammaproteobacteria K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth rpoD GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016987,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043254,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - ko:K03086 - - - - ko00000,ko03021 - - - Sigma70_ner,Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4 SRR25158195_k127_103382_0 1219375.CM002139_gene938 5.562e-151 480.0 COG1082@1|root,COG1082@2|Bacteria,1RAC3@1224|Proteobacteria,1RS39@1236|Gammaproteobacteria,1X6BI@135614|Xanthomonadales 135614|Xanthomonadales G xylose isomerase - - - - - - - - - - - - AP_endonuc_2 SRR25158195_k127_103382_4 391008.Smal_1045 3.144e-41 153.0 COG2010@1|root,COG2010@2|Bacteria,1QCT1@1224|Proteobacteria,1T8JY@1236|Gammaproteobacteria,1XAVB@135614|Xanthomonadales 135614|Xanthomonadales C Cytochrome C oxidase, cbb3-type, subunit III - - - - - - - - - - - - Cytochrome_CBB3 SRR25158195_k127_103382_1 522373.Smlt1191 1.226e-146 466.0 COG2133@1|root,COG2133@2|Bacteria,1R6DX@1224|Proteobacteria,1RZW3@1236|Gammaproteobacteria,1X359@135614|Xanthomonadales 135614|Xanthomonadales G Domain of Unknown Function (DUF1080) - - - - - - - - - - - - DUF1080 SRR25158195_k127_103382_2 1429851.X548_03775 2.197e-91 305.0 2CDAN@1|root,3134Z@2|Bacteria,1RHTY@1224|Proteobacteria,1S6GS@1236|Gammaproteobacteria,1X7JC@135614|Xanthomonadales 135614|Xanthomonadales S Gluconate 2-dehydrogenase subunit 3 - - - - - - - - - - - - Gluconate_2-dh3 SRR25158195_k127_103382_3 1429851.X548_03770 7.967e-91 299.0 COG2303@1|root,COG2303@2|Bacteria,1MU3F@1224|Proteobacteria,1RPBQ@1236|Gammaproteobacteria,1X4F1@135614|Xanthomonadales 135614|Xanthomonadales E GMC oxidoreductase - - - - - - - - - - - - GMC_oxred_C,GMC_oxred_N SRR25158195_k127_1039170_0 335543.Sfum_2437 3.662e-225 716.0 COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,42NCZ@68525|delta/epsilon subdivisions,2WK3X@28221|Deltaproteobacteria,2MRHY@213462|Syntrophobacterales 28221|Deltaproteobacteria P Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K07787 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.6.1.4 - iAF987.Gmet_1547 ACR_tran SRR25158195_k127_1039686_0 1429851.X548_19310 2.297e-311 953.0 COG3507@1|root,COG3507@2|Bacteria,1MWY2@1224|Proteobacteria,1RR93@1236|Gammaproteobacteria,1X2XR@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 43 family - - 3.2.1.37 ko:K01198 ko00520,ko01100,map00520,map01100 - R01433 RC00467 ko00000,ko00001,ko01000 - GH43 - Glyco_hydro_43 SRR25158195_k127_1039686_1 1429851.X548_19315 1.442e-224 698.0 COG1609@1|root,COG1609@2|Bacteria,1MVUR@1224|Proteobacteria,1RN2K@1236|Gammaproteobacteria,1X3D4@135614|Xanthomonadales 135614|Xanthomonadales K lacI family - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 SRR25158195_k127_1039686_2 1429851.X548_19320 1.189e-80 270.0 COG3717@1|root,COG3717@2|Bacteria,1MU9D@1224|Proteobacteria,1RPDB@1236|Gammaproteobacteria,1X3J9@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate kduI - 5.3.1.17 ko:K01815 ko00040,map00040 - R04383 RC00541 ko00000,ko00001,ko01000 - - - KduI SRR25158195_k127_1050499_1 596152.DesU5LDRAFT_3732 3.131e-21 105.0 COG0642@1|root,COG4191@1|root,COG5002@1|root,COG2205@2|Bacteria,COG4191@2|Bacteria,COG5002@2|Bacteria,1R7R8@1224|Proteobacteria,42NER@68525|delta/epsilon subdivisions,2WUV0@28221|Deltaproteobacteria,2M8RU@213115|Desulfovibrionales 28221|Deltaproteobacteria T SMART ATP-binding region ATPase domain protein - - - - - - - - - - - - GAF_3,HATPase_c,HisKA,PAS,PAS_4,PAS_9,SBP_bac_3 SRR25158195_k127_1050499_0 1218084.BBJK01000066_gene4947 3.348e-206 642.0 COG1960@1|root,COG1960@2|Bacteria,1MUK0@1224|Proteobacteria,2VHDV@28216|Betaproteobacteria,1K6D6@119060|Burkholderiaceae 28216|Betaproteobacteria I Acyl-CoA dehydrogenase, middle domain gcdH - 1.3.8.6 ko:K00252 ko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,map00071,map00310,map00362,map00380,map01100,map01120,map01130 M00032 R02487,R02488,R10074 RC00052,RC00156 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N SRR25158195_k127_1052677_5 1118235.CAJH01000004_gene160 6.529e-14 79.0 COG5295@1|root,COG5295@2|Bacteria,1N338@1224|Proteobacteria,1RPXV@1236|Gammaproteobacteria,1XCA3@135614|Xanthomonadales 135614|Xanthomonadales UW Coiled stalk of trimeric autotransporter adhesin xadA - - ko:K21449 - - - - ko00000,ko02000 1.B.40.2 - - ESPR,YadA_head,YadA_stalk SRR25158195_k127_1052677_2 1205753.A989_09703 2.194e-153 497.0 COG4191@1|root,COG4191@2|Bacteria,1MU55@1224|Proteobacteria,1RQ5N@1236|Gammaproteobacteria,1X4RU@135614|Xanthomonadales 135614|Xanthomonadales T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c SRR25158195_k127_1052677_3 1442599.JAAN01000045_gene2770 6.883e-68 238.0 COG0745@1|root,COG0745@2|Bacteria,1MZQA@1224|Proteobacteria,1S97F@1236|Gammaproteobacteria,1X6AS@135614|Xanthomonadales 135614|Xanthomonadales KT COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - Response_reg,Trans_reg_C SRR25158195_k127_1052677_4 1429851.X548_04560 1.583e-65 225.0 COG3134@1|root,COG3134@2|Bacteria,1QCGT@1224|Proteobacteria,1T87D@1236|Gammaproteobacteria,1X7UA@135614|Xanthomonadales 135614|Xanthomonadales S Glycine zipper 2TM domain - - - - - - - - - - - - Rick_17kDa_Anti SRR25158195_k127_1052677_0 1429851.X548_04570 1.238e-210 663.0 COG0842@1|root,COG0842@2|Bacteria,1R4QG@1224|Proteobacteria,1RTXK@1236|Gammaproteobacteria,1X7AD@135614|Xanthomonadales 135614|Xanthomonadales V ABC-2 family transporter protein - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_3 SRR25158195_k127_1052677_1 391008.Smal_1172 2.507e-184 579.0 COG1511@1|root,COG1511@2|Bacteria,1RFKF@1224|Proteobacteria,1T49P@1236|Gammaproteobacteria,1X822@135614|Xanthomonadales 135614|Xanthomonadales S ABC-2 family transporter protein - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_3 SRR25158195_k127_1063260_1 391008.Smal_0083 8.212e-179 573.0 28HMG@1|root,2Z7W1@2|Bacteria,1P7NH@1224|Proteobacteria,1T14M@1236|Gammaproteobacteria,1XD31@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1063260_0 391008.Smal_0084 0.0 1220.0 COG0803@1|root,COG0803@2|Bacteria,1NN70@1224|Proteobacteria,1T140@1236|Gammaproteobacteria,1XD2W@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the bacterial solute-binding protein 9 family - - - - - - - - - - - - - SRR25158195_k127_1063260_2 391008.Smal_0085 4.558e-174 555.0 28JTF@1|root,2Z9IQ@2|Bacteria,1R728@1224|Proteobacteria,1SJF5@1236|Gammaproteobacteria,1X4II@135614|Xanthomonadales 135614|Xanthomonadales S Aerotolerance regulator N-terminal - - - - - - - - - - - - BatA SRR25158195_k127_1063260_3 391008.Smal_0086 6.137e-155 490.0 COG1721@1|root,COG1721@2|Bacteria,1MWPG@1224|Proteobacteria,1S4TD@1236|Gammaproteobacteria,1XCJ3@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function DUF58 - - - - - - - - - - - - DUF58 SRR25158195_k127_1068950_0 391008.Smal_2753 8.038e-196 612.0 COG3358@1|root,COG3358@2|Bacteria,1R9CT@1224|Proteobacteria,1SP2S@1236|Gammaproteobacteria,1X42J@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1684) - - - ko:K09164 - - - - ko00000 - - - DUF1684 SRR25158195_k127_1068950_1 391008.Smal_2752 1.703e-174 554.0 COG3735@1|root,COG3735@2|Bacteria,1MVCW@1224|Proteobacteria,1RRI8@1236|Gammaproteobacteria,1X5HS@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - ko:K09973 - - - - ko00000 - - - TraB SRR25158195_k127_1068950_2 522373.Smlt3326 4.424e-104 340.0 COG5394@1|root,COG5394@2|Bacteria,1RHRC@1224|Proteobacteria,1S2XX@1236|Gammaproteobacteria,1XC5X@135614|Xanthomonadales 135614|Xanthomonadales S synthesis repressor, PhaR phaR - - - - - - - - - - - PHB_acc,PHB_acc_N SRR25158195_k127_1068950_3 1429851.X548_12240 3.167e-51 181.0 COG1028@1|root,COG1028@2|Bacteria,1MUEV@1224|Proteobacteria,1RNH2@1236|Gammaproteobacteria,1X4C7@135614|Xanthomonadales 135614|Xanthomonadales IQ Belongs to the short-chain dehydrogenases reductases (SDR) family phbB - 1.1.1.36 ko:K00023 ko00630,ko00650,ko01120,ko01200,map00630,map00650,map01120,map01200 M00373 R01779,R01977 RC00103,RC00117 ko00000,ko00001,ko00002,ko01000 - - - adh_short,adh_short_C2 SRR25158195_k127_1070533_2 391008.Smal_1753 2.597e-98 322.0 COG0124@1|root,COG0124@2|Bacteria,1MV2K@1224|Proteobacteria,1SKNI@1236|Gammaproteobacteria,1X5G2@135614|Xanthomonadales 135614|Xanthomonadales J histidyl-tRNA synthetase hisS - 6.1.1.21 ko:K01892 ko00970,map00970 M00359,M00360 R03655 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - HGTP_anticodon,tRNA-synt_His SRR25158195_k127_1070533_3 522373.Smlt2161 2.026e-56 198.0 COG4496@1|root,COG4496@2|Bacteria,1NAAX@1224|Proteobacteria,1SG3S@1236|Gammaproteobacteria,1X7DY@135614|Xanthomonadales 135614|Xanthomonadales S protein, YerC YecD - - - - - - - - - - - - Trp_repressor SRR25158195_k127_1070533_1 522373.Smlt2162 2.475e-185 581.0 COG0040@1|root,COG0040@2|Bacteria,1MUCY@1224|Proteobacteria,1RNAX@1236|Gammaproteobacteria,1X4SF@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity hisG GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 ko:K00765 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01071 RC02819,RC03200 ko00000,ko00001,ko00002,ko01000 - - - HisG,HisG_C SRR25158195_k127_1070533_0 522373.Smlt2163 1.724e-244 759.0 COG0141@1|root,COG0141@2|Bacteria,1MUUF@1224|Proteobacteria,1RMZD@1236|Gammaproteobacteria,1X4GX@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine hisD GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 ko:K00013 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R01158,R01163,R03012 RC00099,RC00242,RC00463 ko00000,ko00001,ko00002,ko01000 - - - Histidinol_dh SRR25158195_k127_1070533_4 391008.Smal_1758 7.243e-31 126.0 COG0079@1|root,COG0079@2|Bacteria,1MW7I@1224|Proteobacteria,1RP4T@1236|Gammaproteobacteria,1X3SR@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily hisC - 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 SRR25158195_k127_1074184_0 391008.Smal_3886 2.501e-254 786.0 COG1643@1|root,COG1643@2|Bacteria,1MUEQ@1224|Proteobacteria,1RR1B@1236|Gammaproteobacteria,1X443@135614|Xanthomonadales 135614|Xanthomonadales L Helicase hrpB - 3.6.4.13 ko:K03579 - - - - ko00000,ko01000 - - - DEAD,HA2,Helicase_C,HrpB_C SRR25158195_k127_1074184_1 1429851.X548_18275 4.751e-52 186.0 2AFNC@1|root,315PW@2|Bacteria,1QDYV@1224|Proteobacteria,1TA73@1236|Gammaproteobacteria,1X8K3@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1081736_5 391008.Smal_3314 2.733e-68 237.0 COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,1R4GA@1224|Proteobacteria,1RQNP@1236|Gammaproteobacteria,1X9GQ@135614|Xanthomonadales 135614|Xanthomonadales HP Secretin and TonB N terminus short domain - - - ko:K16087 - - - - ko00000,ko02000 1.B.14.2 - - Plug,TonB_dep_Rec SRR25158195_k127_1081736_2 522373.Smlt3899 3.664e-148 475.0 COG3712@1|root,COG3712@2|Bacteria,1R9UE@1224|Proteobacteria,1SZ7G@1236|Gammaproteobacteria,1X9XH@135614|Xanthomonadales 135614|Xanthomonadales PT Domain of unknown function (DUF4880) - - - - - - - - - - - - DUF4880,FecR SRR25158195_k127_1081736_4 391008.Smal_3316 8.92e-89 295.0 COG1595@1|root,COG1595@2|Bacteria,1RM5T@1224|Proteobacteria,1S6KC@1236|Gammaproteobacteria,1X9YX@135614|Xanthomonadales 135614|Xanthomonadales K Helix-turn-helix domain - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_1081736_3 1118235.CAJH01000022_gene1352 5.579e-111 359.0 COG0221@1|root,COG0221@2|Bacteria,1RA2F@1224|Proteobacteria,1RPVD@1236|Gammaproteobacteria,1X3KR@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions ppa - 3.6.1.1 ko:K01507 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyrophosphatase SRR25158195_k127_1081736_1 391008.Smal_3319 2.169e-223 702.0 COG0745@1|root,COG1639@1|root,COG0745@2|Bacteria,COG1639@2|Bacteria,1R6YN@1224|Proteobacteria,1S0UQ@1236|Gammaproteobacteria,1X438@135614|Xanthomonadales 135614|Xanthomonadales T HDOD domain - - - - - - - - - - - - HDOD SRR25158195_k127_1081736_0 454957.IA64_03685 0.0 1026.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1X50A@135614|Xanthomonadales 135614|Xanthomonadales M receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1094221_5 59538.XP_005976554.1 2.367e-31 122.0 COG1960@1|root,KOG0139@2759|Eukaryota,38H6J@33154|Opisthokonta,3BC6X@33208|Metazoa,3CVK7@33213|Bilateria,48529@7711|Chordata,48V4V@7742|Vertebrata,3JAEI@40674|Mammalia,4IY3I@91561|Cetartiodactyla 59538.XP_005976554.1|- I Short-chain specific acyl-CoA dehydrogenase - - - - - - - - - - - - - SRR25158195_k127_1094221_0 522373.Smlt3171 0.0 1997.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X34J@135614|Xanthomonadales 135614|Xanthomonadales V Efflux pump membrane transporter - - - ko:K18138 ko01501,ko01503,map01501,map01503 M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2 - - ACR_tran SRR25158195_k127_1094221_1 522373.Smlt3170 2.148e-233 728.0 COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,1RPI1@1236|Gammaproteobacteria,1X3FF@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 SRR25158195_k127_1094221_3 522373.Smlt3169 3.021e-140 449.0 COG1309@1|root,COG1309@2|Bacteria,1PCV3@1224|Proteobacteria,1SY01@1236|Gammaproteobacteria,1X72X@135614|Xanthomonadales 135614|Xanthomonadales K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_C_7,TetR_N SRR25158195_k127_1094221_2 391008.Smal_2605 2.627e-181 579.0 COG2902@1|root,COG2902@2|Bacteria,1MXNV@1224|Proteobacteria,1RQVZ@1236|Gammaproteobacteria,1X46R@135614|Xanthomonadales 135614|Xanthomonadales E glutamate dehydrogenase - - 1.4.1.2 ko:K15371 ko00220,ko00250,ko00430,ko00910,ko01100,map00220,map00250,map00430,map00910,map01100 - R00243 RC00006,RC02799 ko00000,ko00001,ko01000 - - - Bac_GDH,GDH_N SRR25158195_k127_109705_0 522373.Smlt2761 9.448e-121 390.0 COG0297@1|root,COG0297@2|Bacteria,1MUGM@1224|Proteobacteria,1RNMP@1236|Gammaproteobacteria,1X4FA@135614|Xanthomonadales 135614|Xanthomonadales G Synthesizes alpha-1,4-glucan chains using ADP-glucose glgA GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 ko:K00703 ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026 M00565 R02421 RC00005 ko00000,ko00001,ko00002,ko01000,ko01003 - GT5 - Glyco_transf_5,Glycos_transf_1 SRR25158195_k127_109705_2 522373.Smlt2762 1.642e-78 268.0 COG3829@1|root,COG3829@2|Bacteria,1RH32@1224|Proteobacteria,1S7TV@1236|Gammaproteobacteria,1XCBC@135614|Xanthomonadales 135614|Xanthomonadales KT PAS fold - - - - - - - - - - - - PAS SRR25158195_k127_109705_1 391008.Smal_2225 3.91e-117 385.0 COG0369@1|root,COG0369@2|Bacteria,1QUAH@1224|Proteobacteria,1T1RJ@1236|Gammaproteobacteria,1X3NF@135614|Xanthomonadales 135614|Xanthomonadales E Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component cysJ - 1.8.1.2 ko:K00380 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00176 R00858 RC00065 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_1,Flavodoxin_1,NAD_binding_1 SRR25158195_k127_1101613_0 29581.BW37_02185 1.399e-177 563.0 COG0667@1|root,COG0667@2|Bacteria,1MU1S@1224|Proteobacteria,2VKE9@28216|Betaproteobacteria,473B1@75682|Oxalobacteraceae 28216|Betaproteobacteria C aryl-alcohol dehydrogenase - - - ko:K19265 - - - - ko00000,ko01000 - - - Aldo_ket_red SRR25158195_k127_1101613_1 1254432.SCE1572_17420 4.198e-33 130.0 COG1628@1|root,COG1628@2|Bacteria,1RCX1@1224|Proteobacteria,4307R@68525|delta/epsilon subdivisions,2WVEG@28221|Deltaproteobacteria,2Z3D2@29|Myxococcales 28221|Deltaproteobacteria S Protein of unknown function DUF99 - - - ko:K09120 - - - - ko00000 - - - DUF99 SRR25158195_k127_1110009_0 522373.Smlt2937 0.0 1419.0 COG1629@1|root,COG1629@2|Bacteria,1MWH0@1224|Proteobacteria,1RQ19@1236|Gammaproteobacteria 1236|Gammaproteobacteria P COG1629 Outer membrane receptor proteins, mostly Fe transport - - - ko:K16087 - - - - ko00000,ko02000 1.B.14.2 - - Plug,TonB_dep_Rec SRR25158195_k127_1110009_1 522373.Smlt2936 1.78e-136 447.0 COG3712@1|root,COG3712@2|Bacteria,1MZCK@1224|Proteobacteria,1S721@1236|Gammaproteobacteria 1236|Gammaproteobacteria PT FecR protein - - - ko:K07165 - - - - ko00000 - - - DUF4880,DUF4974,FecR SRR25158195_k127_1110009_3 391008.Smal_2387 1.17e-94 312.0 COG1595@1|root,COG1595@2|Bacteria,1N6SV@1224|Proteobacteria,1S570@1236|Gammaproteobacteria,1X6UZ@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_1110009_2 391008.Smal_2384 3.911e-99 324.0 COG0518@1|root,COG0518@2|Bacteria,1MUDH@1224|Proteobacteria,1S2H0@1236|Gammaproteobacteria,1XCM4@135614|Xanthomonadales 135614|Xanthomonadales F Glutamine amidotransferase class-I - - 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase SRR25158195_k127_1123091_2 391008.Smal_1347 5.36e-36 136.0 COG0598@1|root,COG0598@2|Bacteria,1MX09@1224|Proteobacteria,1RZ95@1236|Gammaproteobacteria,1X3T7@135614|Xanthomonadales 135614|Xanthomonadales P transport protein corA - - ko:K03284 - - - - ko00000,ko02000 1.A.35.1,1.A.35.3 - - CorA SRR25158195_k127_1123091_0 1429851.X548_05490 2.418e-241 756.0 28I3N@1|root,2Z87C@2|Bacteria,1R8BJ@1224|Proteobacteria,1S1F3@1236|Gammaproteobacteria,1X2XC@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4105) - - - - - - - - - - - - DUF4105 SRR25158195_k127_1123091_1 391008.Smal_1349 1.48e-132 423.0 COG4535@1|root,COG4535@2|Bacteria,1QTU8@1224|Proteobacteria,1RMKX@1236|Gammaproteobacteria,1X3M9@135614|Xanthomonadales 135614|Xanthomonadales P Transporter corC - - ko:K06189 - - - - ko00000,ko02000 9.A.40.1.2 - - CBS,CorC_HlyC SRR25158195_k127_1123493_0 522373.Smlt1471 0.0 1200.0 COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,1RMUR@1236|Gammaproteobacteria,1X4E6@135614|Xanthomonadales 135614|Xanthomonadales V ABC-type multidrug transport system ATPase and permease bapA - - ko:K18893 ko02010,map02010 - - - ko00000,ko00001,ko02000 3.A.1 - - ABC_membrane,ABC_tran SRR25158195_k127_1123493_1 522373.Smlt1470 5.926e-180 564.0 COG1680@1|root,COG1680@2|Bacteria,1MVZN@1224|Proteobacteria,1RP0R@1236|Gammaproteobacteria,1X55T@135614|Xanthomonadales 135614|Xanthomonadales V Beta-lactamase ampC2 - - - - - - - - - - - Beta-lactamase,DUF3471 SRR25158195_k127_1124173_3 522373.Smlt2288 1.477e-53 188.0 COG1536@1|root,COG1536@2|Bacteria,1MV9X@1224|Proteobacteria,1RM9B@1236|Gammaproteobacteria,1X33H@135614|Xanthomonadales 135614|Xanthomonadales N FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation fliG - - ko:K02410 ko02030,ko02040,map02030,map02040 - - - ko00000,ko00001,ko02035 - - - FliG_C,FliG_M,FliG_N SRR25158195_k127_1124173_1 522373.Smlt2287 2.623e-120 388.0 COG1317@1|root,COG1317@2|Bacteria,1N5X8@1224|Proteobacteria,1SXJN@1236|Gammaproteobacteria,1X6BH@135614|Xanthomonadales 135614|Xanthomonadales N flagellar assembly protein FliH fliH - - ko:K02411 ko02040,map02040 - - - ko00000,ko00001,ko02035,ko02044 3.A.6.2 - - FliH SRR25158195_k127_1124173_0 522373.Smlt2286 3.866e-283 889.0 COG1157@1|root,COG1157@2|Bacteria,1MUH6@1224|Proteobacteria,1RM9W@1236|Gammaproteobacteria,1X4GH@135614|Xanthomonadales 135614|Xanthomonadales NU Flagellar protein export ATPase FliI fliI - 3.6.3.14 ko:K02412 ko02040,map02040 - - - ko00000,ko00001,ko01000,ko02035,ko02044 3.A.6.2,3.A.6.3 - - ATP-synt_ab SRR25158195_k127_1124173_2 522373.Smlt2285 2.926e-79 266.0 COG2882@1|root,COG2882@2|Bacteria,1NB1D@1224|Proteobacteria,1SCPA@1236|Gammaproteobacteria,1X76Y@135614|Xanthomonadales 135614|Xanthomonadales N flagellar export protein FliJ fliJ - - ko:K02413 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - FliJ SRR25158195_k127_1124173_4 522373.Smlt2284 2.652e-15 83.0 COG3144@1|root,COG3144@2|Bacteria,1N7XT@1224|Proteobacteria,1SCA6@1236|Gammaproteobacteria,1X7EU@135614|Xanthomonadales 135614|Xanthomonadales N Flagellar hook-length control protein fliK - - ko:K02414 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - Flg_hook SRR25158195_k127_112969_3 522373.Smlt0798 2.826e-116 375.0 COG3127@1|root,COG3127@2|Bacteria,1MU9R@1224|Proteobacteria,1RM8Y@1236|Gammaproteobacteria,1X341@135614|Xanthomonadales 135614|Xanthomonadales Q ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX SRR25158195_k127_112969_1 522373.Smlt0797 3.009e-209 651.0 2CCG4@1|root,2Z873@2|Bacteria,1MVM8@1224|Proteobacteria,1RYEP@1236|Gammaproteobacteria,1X52D@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_112969_2 391008.Smal_0646 1.068e-124 402.0 COG3720@1|root,COG3720@2|Bacteria,1QDFZ@1224|Proteobacteria,1T9F5@1236|Gammaproteobacteria,1X8B1@135614|Xanthomonadales 135614|Xanthomonadales P iron ion transport - - - - - - - - - - - - - SRR25158195_k127_112969_0 1429851.X548_01805 2.5e-323 991.0 COG1629@1|root,COG4771@2|Bacteria,1MX42@1224|Proteobacteria,1RQ2K@1236|Gammaproteobacteria,1X35F@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K16087 - - - - ko00000,ko02000 1.B.14.2 - - Plug,TonB_dep_Rec SRR25158195_k127_1130185_0 391008.Smal_1088 0.0 1133.0 COG3104@1|root,COG3104@2|Bacteria,1MW6W@1224|Proteobacteria,1RM8P@1236|Gammaproteobacteria,1X3CQ@135614|Xanthomonadales 135614|Xanthomonadales E Transporter - - - ko:K03305 - - - - ko00000 2.A.17 - - PTR2 SRR25158195_k127_1130185_1 391008.Smal_1089 1.299e-214 670.0 COG3503@1|root,COG3503@2|Bacteria,1QQ9D@1224|Proteobacteria,1RMPY@1236|Gammaproteobacteria,1X5HQ@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1624) - - - - - - - - - - - - DUF1624 SRR25158195_k127_1139774_0 1442599.JAAN01000042_gene3056 4.87e-251 786.0 COG1629@1|root,COG4771@2|Bacteria,1MVFB@1224|Proteobacteria,1RNMS@1236|Gammaproteobacteria,1XDD8@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_1139774_1 1174684.EBMC1_15167 1.428e-216 686.0 COG3653@1|root,COG3653@2|Bacteria,1MWWY@1224|Proteobacteria,2TSZZ@28211|Alphaproteobacteria,2K1RR@204457|Sphingomonadales 204457|Sphingomonadales Q Amidohydrolase family - - 3.5.1.81 ko:K06015 - - R02192 RC00064,RC00328 ko00000,ko01000 - - - Amidohydro_3 SRR25158195_k127_1139774_2 1442599.JAAN01000042_gene3057 1.257e-210 662.0 COG3104@1|root,COG3104@2|Bacteria,1MW6W@1224|Proteobacteria,1RM8P@1236|Gammaproteobacteria,1X5T0@135614|Xanthomonadales 135614|Xanthomonadales E POT family - - - - - - - - - - - - PTR2 SRR25158195_k127_114004_1 1429851.X548_15780 0.0 1224.0 COG1629@1|root,COG4774@1|root,COG1629@2|Bacteria,COG4774@2|Bacteria,1MV8W@1224|Proteobacteria,1RMQA@1236|Gammaproteobacteria,1X3B5@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_114004_0 391008.Smal_3427 0.0 1445.0 COG3525@1|root,COG3525@2|Bacteria,1MVDE@1224|Proteobacteria,1RMNI@1236|Gammaproteobacteria,1X467@135614|Xanthomonadales 135614|Xanthomonadales G Glycosyl hydrolase family 20, catalytic domain nahA - 3.2.1.52 ko:K12373 ko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142 M00079 R00022,R06004,R11316 RC00049 ko00000,ko00001,ko00002,ko01000,ko03110 - GH20 - CHB_HEX_C_1,Fn3_assoc,Glyco_hydro_20,Glyco_hydro_20b SRR25158195_k127_114004_6 1429851.X548_15790 1.001e-64 225.0 COG5652@1|root,COG5652@2|Bacteria,1NGE7@1224|Proteobacteria,1SGEP@1236|Gammaproteobacteria,1X7I7@135614|Xanthomonadales 135614|Xanthomonadales S PFAM VanZ - - - - - - - - - - - - VanZ SRR25158195_k127_114004_2 522373.Smlt4029 2.864e-248 769.0 COG1565@1|root,COG1565@2|Bacteria,1N3CJ@1224|Proteobacteria,1RYCJ@1236|Gammaproteobacteria,1X3YI@135614|Xanthomonadales 135614|Xanthomonadales S Putative S-adenosyl-L-methionine-dependent methyltransferase - - - - - - - - - - - - Methyltransf_28 SRR25158195_k127_114004_4 522373.Smlt4030 2.656e-147 467.0 COG1028@1|root,COG1028@2|Bacteria,1MUUV@1224|Proteobacteria,1RMJU@1236|Gammaproteobacteria,1X51Z@135614|Xanthomonadales 135614|Xanthomonadales IQ COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - 1.5.1.33 ko:K03793 - - - - ko00000,ko01000 - - - adh_short_C2 SRR25158195_k127_114004_5 391008.Smal_3431 1.241e-94 311.0 COG0801@1|root,COG0801@2|Bacteria,1RHNN@1224|Proteobacteria,1S62M@1236|Gammaproteobacteria,1X6J5@135614|Xanthomonadales 135614|Xanthomonadales H 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase folK1 - 2.7.6.3 ko:K00950 ko00790,ko01100,map00790,map01100 M00126,M00841 R03503 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - HPPK SRR25158195_k127_114004_3 522373.Smlt4032 1.802e-151 479.0 COG3484@1|root,COG3484@2|Bacteria,1N057@1224|Proteobacteria,1RRR0@1236|Gammaproteobacteria,1X366@135614|Xanthomonadales 135614|Xanthomonadales O Proteasome subunit - - - ko:K07395 - - - - ko00000 - - - Proteasome SRR25158195_k127_1146637_0 1205753.A989_14652 2.249e-166 548.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,1RN5K@1236|Gammaproteobacteria,1X9C1@135614|Xanthomonadales 135614|Xanthomonadales MU membrane oprN - - - - - - - - - - - OEP SRR25158195_k127_1146637_1 1131451.O1K_12986 1.657e-115 377.0 COG0477@1|root,COG0477@2|Bacteria,1RGPN@1224|Proteobacteria,1T1M7@1236|Gammaproteobacteria,1X99V@135614|Xanthomonadales 135614|Xanthomonadales U the major facilitator superfamily - - - ko:K03446 - M00701 - - ko00000,ko00002,ko02000 2.A.1.3 - - MFS_1 SRR25158195_k127_1153681_0 391008.Smal_2586 0.0 1009.0 COG1196@1|root,COG1196@2|Bacteria,1MUAQ@1224|Proteobacteria,1RNA6@1236|Gammaproteobacteria,1X3YE@135614|Xanthomonadales 135614|Xanthomonadales D Required for chromosome condensation and partitioning smc - - ko:K03529 - - - - ko00000,ko03036 - - - SMC_N,SMC_hinge SRR25158195_k127_1153681_3 522373.Smlt3144 4.751e-146 464.0 COG3115@1|root,COG3115@2|Bacteria,1MVHR@1224|Proteobacteria,1RMDB@1236|Gammaproteobacteria,1X3YH@135614|Xanthomonadales 135614|Xanthomonadales D Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins zipA - - ko:K03528 - - - - ko00000,ko03036 - - - ZipA_C SRR25158195_k127_1153681_2 391008.Smal_2584 6.84e-203 638.0 COG0079@1|root,COG0079@2|Bacteria,1MW7I@1224|Proteobacteria,1RZAD@1236|Gammaproteobacteria,1XCS4@135614|Xanthomonadales 135614|Xanthomonadales E Aminotransferase class I and II - - 2.6.1.9 ko:K00817 ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230 M00026 R00694,R00734,R03243 RC00006,RC00888 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 SRR25158195_k127_1153681_1 522373.Smlt3142 4.424e-261 807.0 COG0272@1|root,COG0272@2|Bacteria,1MV3R@1224|Proteobacteria,1RPAV@1236|Gammaproteobacteria,1X2ZU@135614|Xanthomonadales 135614|Xanthomonadales L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA ligA GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 ko:K01972 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00382 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5 SRR25158195_k127_1154505_3 391008.Smal_0549 3.341e-33 128.0 COG4970@1|root,COG4970@2|Bacteria,1NA3K@1224|Proteobacteria,1T08R@1236|Gammaproteobacteria,1X7EQ@135614|Xanthomonadales 135614|Xanthomonadales NU General secretion pathway protein - - - ko:K02457 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - GspH,N_methyl SRR25158195_k127_1154505_2 391008.Smal_0548 2.015e-85 284.0 COG2165@1|root,COG2165@2|Bacteria,1RDX2@1224|Proteobacteria,1S69B@1236|Gammaproteobacteria,1X7UQ@135614|Xanthomonadales 135614|Xanthomonadales NU General secretion pathway protein - - - ko:K02456 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSG SRR25158195_k127_1154505_1 391008.Smal_0547 1.83e-238 740.0 COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,1RQ86@1236|Gammaproteobacteria,1X345@135614|Xanthomonadales 135614|Xanthomonadales U General secretion pathway protein xpsF GO:0002790,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0016020,GO:0032940,GO:0033036,GO:0042886,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098776 - ko:K02455 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSF SRR25158195_k127_1154505_0 522373.Smlt0687 0.0 1084.0 COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,1RMBS@1236|Gammaproteobacteria,1X36S@135614|Xanthomonadales 135614|Xanthomonadales NU General secretion pathway protein xpsE GO:0003674,GO:0005488,GO:0005515,GO:0042802 - ko:K02454 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSE,T2SSE_N SRR25158195_k127_1154505_4 1429851.X548_01245 1.294e-19 88.0 COG1404@1|root,COG1404@2|Bacteria,1RDT6@1224|Proteobacteria,1S3CA@1236|Gammaproteobacteria,1XCA2@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the peptidase S8 family - - - ko:K14645 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002,ko03110 - - - PPC,Peptidase_S8 SRR25158195_k127_1165239_2 1429851.X548_10270 1.176e-68 233.0 COG0346@1|root,COG0346@2|Bacteria,1RH8G@1224|Proteobacteria,1S629@1236|Gammaproteobacteria,1XC1T@135614|Xanthomonadales 135614|Xanthomonadales E COG0346 Lactoylglutathione lyase and related lyases - - - - - - - - - - - - - SRR25158195_k127_1165239_0 522373.Smlt2846 0.0 1294.0 COG1292@1|root,COG1292@2|Bacteria,1MV0K@1224|Proteobacteria,1RP3E@1236|Gammaproteobacteria,1X4T6@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the BCCT transporter (TC 2.A.15) family betT - - ko:K02168 - - - - ko00000,ko02000 2.A.15.1.3,2.A.15.1.4 - - BCCT SRR25158195_k127_1165239_1 522373.Smlt2845 2.265e-176 552.0 COG4206@1|root,COG4206@2|Bacteria,1R47X@1224|Proteobacteria,1T1X7@1236|Gammaproteobacteria,1XD66@135614|Xanthomonadales 135614|Xanthomonadales H TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1165484_1 1429851.X548_16935 3.381e-173 545.0 COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,1RP7Q@1236|Gammaproteobacteria,1X337@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - ko:K03566 ko02026,map02026 - - - ko00000,ko00001,ko03000 - - - HTH_1,LysR_substrate SRR25158195_k127_1165484_3 391008.Smal_3636 1.142e-126 408.0 COG0834@1|root,COG0834@2|Bacteria,1N2RR@1224|Proteobacteria,1S3IS@1236|Gammaproteobacteria 1236|Gammaproteobacteria ET COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain - - - ko:K02030 - M00236 - - ko00000,ko00002,ko02000 3.A.1.3 - - SBP_bac_3 SRR25158195_k127_1165484_4 1429851.X548_16925 8.505e-05 48.0 COG3324@1|root,COG3324@2|Bacteria 2|Bacteria E translation initiation factor activity - - - ko:K06996 - - - - ko00000 - - - Glyoxalase SRR25158195_k127_1165484_2 391008.Smal_3634 7.737e-145 465.0 COG2162@1|root,COG2162@2|Bacteria,1RDF3@1224|Proteobacteria,1RQTF@1236|Gammaproteobacteria,1X6DX@135614|Xanthomonadales 135614|Xanthomonadales Q Belongs to the arylamine N-acetyltransferase family - - 2.3.1.118 ko:K00675 - - - - ko00000,ko01000 - - - Acetyltransf_2 SRR25158195_k127_1165484_0 522373.Smlt4222 0.0 1106.0 COG0840@1|root,COG5000@1|root,COG0840@2|Bacteria,COG5000@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X3KX@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - - - - - - - - - - MCPsignal,PAS_8 SRR25158195_k127_1165522_0 1205680.CAKO01000040_gene668 1.561e-144 471.0 COG1840@1|root,COG1840@2|Bacteria,1Q13Q@1224|Proteobacteria,2TS7Y@28211|Alphaproteobacteria,2JPB9@204441|Rhodospirillales 204441|Rhodospirillales P COG1840 ABC-type Fe3 transport system, periplasmic component - - - ko:K02055 ko02024,map02024 M00193 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11 - - SBP_bac_6 SRR25158195_k127_1169417_2 391008.Smal_3967 4.858e-102 332.0 COG0357@1|root,COG0357@2|Bacteria,1MY0K@1224|Proteobacteria,1RMRZ@1236|Gammaproteobacteria,1X4ZH@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the N7 position of guanine in position 527 of 16S rRNA rsmG GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 ko:K03501 - - - - ko00000,ko01000,ko03009,ko03036 - - - GidB SRR25158195_k127_1169417_0 522373.Smlt4615 8.346e-161 509.0 COG1192@1|root,COG1192@2|Bacteria,1MV43@1224|Proteobacteria,1RNJK@1236|Gammaproteobacteria,1X30T@135614|Xanthomonadales 135614|Xanthomonadales D chromosome partitioning parA - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31 SRR25158195_k127_1169417_1 522373.Smlt4614 6.534e-142 457.0 COG1475@1|root,COG1475@2|Bacteria,1MW2E@1224|Proteobacteria,1RN65@1236|Gammaproteobacteria,1X3IJ@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the ParB family parB - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc SRR25158195_k127_1169732_9 522373.Smlt1083 1.643e-67 239.0 COG0477@1|root,COG2814@2|Bacteria,1MX1Q@1224|Proteobacteria,1RYQ3@1236|Gammaproteobacteria,1XD69@135614|Xanthomonadales 135614|Xanthomonadales EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_1169732_8 522373.Smlt1084 1.074e-83 278.0 COG0789@1|root,COG0789@2|Bacteria,1RH2U@1224|Proteobacteria,1S6M0@1236|Gammaproteobacteria,1X746@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional soxR - - ko:K13639 - - - - ko00000,ko03000 - - - MerR,MerR-DNA-bind SRR25158195_k127_1169732_6 391008.Smal_0927 5.078e-109 356.0 COG1028@1|root,COG1028@2|Bacteria,1RA3U@1224|Proteobacteria,1RREY@1236|Gammaproteobacteria,1X6EF@135614|Xanthomonadales 135614|Xanthomonadales IQ Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short_C2 SRR25158195_k127_1169732_3 1429851.X548_03245 3.003e-169 534.0 COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,1RS6U@1236|Gammaproteobacteria,1X9DQ@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_1169732_4 391008.Smal_0929 1.969e-144 461.0 COG0345@1|root,COG0345@2|Bacteria,1R5J1@1224|Proteobacteria,1RNQK@1236|Gammaproteobacteria,1X56M@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline proC - 1.5.1.2 ko:K00286 ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230 M00015 R01248,R01251,R03291,R03293 RC00054,RC00083 ko00000,ko00001,ko00002,ko01000 - - - F420_oxidored,P5CR_dimer SRR25158195_k127_1169732_5 391008.Smal_0930 2.347e-123 397.0 COG0325@1|root,COG0325@2|Bacteria,1MWN7@1224|Proteobacteria,1RNPM@1236|Gammaproteobacteria,1X31J@135614|Xanthomonadales 135614|Xanthomonadales S Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis - - - ko:K06997 - - - - ko00000 - - - Ala_racemase_N SRR25158195_k127_1169732_1 391008.Smal_0931 3.406e-218 677.0 COG2805@1|root,COG2805@2|Bacteria,1MU3J@1224|Proteobacteria,1RN8G@1236|Gammaproteobacteria,1X3Y4@135614|Xanthomonadales 135614|Xanthomonadales NU twitching motility protein pilT - - ko:K02669 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE SRR25158195_k127_1169732_0 59538.XP_005980110.1 1.804e-246 762.0 2EEZG@1|root,2SK9F@2759|Eukaryota,3AHBP@33154|Opisthokonta,3BX9R@33208|Metazoa,3DDUE@33213|Bilateria 59538.XP_005980110.1|- S Type II/IV secretion system protein - - - - - - - - - - - - - SRR25158195_k127_1169732_2 522373.Smlt1091 9.015e-190 596.0 COG0667@1|root,COG0667@2|Bacteria,1MVEH@1224|Proteobacteria,1RPX5@1236|Gammaproteobacteria,1X56H@135614|Xanthomonadales 135614|Xanthomonadales C oxidoreductases (related to aryl-alcohol dehydrogenases) - - - - - - - - - - - - Aldo_ket_red SRR25158195_k127_1169732_7 522373.Smlt1092 8.69e-107 346.0 COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,1RQ66@1236|Gammaproteobacteria,1X3QJ@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_1181533_2 1429851.X548_09445 6.659e-67 228.0 COG0474@1|root,COG0474@2|Bacteria,1MUU5@1224|Proteobacteria,1RMYC@1236|Gammaproteobacteria,1X3A2@135614|Xanthomonadales 135614|Xanthomonadales P COG0474 Cation transport ATPase - - 3.6.3.2 ko:K01531 - - - - ko00000,ko01000 3.A.3.4 - - Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase SRR25158195_k127_1181533_0 522373.Smlt2656 7.022e-134 430.0 COG1285@1|root,COG1285@2|Bacteria,1MURJ@1224|Proteobacteria,1RQUD@1236|Gammaproteobacteria,1X74W@135614|Xanthomonadales 135614|Xanthomonadales S MgtC family - - - ko:K07507 - - - - ko00000,ko02000 9.B.20 - - MgtC SRR25158195_k127_1181533_1 522373.Smlt2657 2.478e-74 267.0 COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,1S082@1236|Gammaproteobacteria,1XCB2@135614|Xanthomonadales 135614|Xanthomonadales T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA SRR25158195_k127_118204_2 1118235.CAJH01000066_gene3571 1.999e-39 158.0 COG3577@1|root,COG3577@2|Bacteria 2|Bacteria S aspartic-type endopeptidase activity - - - - - - - - - - - - Asp_protease_2,PDZ_2,gag-asp_proteas SRR25158195_k127_118204_9 1118235.CAJH01000066_gene3571 3.653e-08 66.0 COG3577@1|root,COG3577@2|Bacteria 2|Bacteria S aspartic-type endopeptidase activity - - - - - - - - - - - - Asp_protease_2,PDZ_2,gag-asp_proteas SRR25158195_k127_118204_0 391008.Smal_2461 0.0 1341.0 COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,1T1GW@1236|Gammaproteobacteria,1XD9P@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_118204_1 522373.Smlt3019 1.204e-317 980.0 COG0784@1|root,COG4191@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,1RP53@1236|Gammaproteobacteria,1X9ST@135614|Xanthomonadales 135614|Xanthomonadales T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c SRR25158195_k127_118406_4 522373.Smlt3435 3.322e-185 582.0 COG0433@1|root,COG0433@2|Bacteria,1MU59@1224|Proteobacteria,1RPYD@1236|Gammaproteobacteria,1X3CJ@135614|Xanthomonadales 135614|Xanthomonadales S ATP-binding protein - - - ko:K06915 - - - - ko00000 - - - DUF853 SRR25158195_k127_118406_0 1429851.X548_12845 2.27e-319 982.0 COG0741@1|root,COG1388@1|root,COG0741@2|Bacteria,COG1388@2|Bacteria,1PJGX@1224|Proteobacteria,1SMIB@1236|Gammaproteobacteria,1X3BG@135614|Xanthomonadales 135614|Xanthomonadales M Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - ko:K08307 - - - - ko00000,ko01000,ko01011 - - - LysM,SLT SRR25158195_k127_118406_12 522373.Smlt3433 4.966e-62 222.0 COG0457@1|root,COG0457@2|Bacteria,1NN7J@1224|Proteobacteria,1SSNA@1236|Gammaproteobacteria,1XB3N@135614|Xanthomonadales 135614|Xanthomonadales S Regulator of ribonuclease activity B - - - - - - - - - - - - RraB SRR25158195_k127_118406_5 522373.Smlt3432 3.262e-169 547.0 COG0688@1|root,COG0688@2|Bacteria,1MVT4@1224|Proteobacteria,1RN1U@1236|Gammaproteobacteria,1X3VJ@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) psd - 4.1.1.65 ko:K01613 ko00564,ko01100,ko01110,map00564,map01100,map01110 M00093 R02055 RC00299 ko00000,ko00001,ko00002,ko01000 - - - PS_Dcarbxylase SRR25158195_k127_118406_7 1429851.X548_12830 1.267e-136 435.0 COG1999@1|root,COG1999@2|Bacteria,1RHSV@1224|Proteobacteria,1S6HW@1236|Gammaproteobacteria,1XCTY@135614|Xanthomonadales 135614|Xanthomonadales S SCO1/SenC - - - ko:K07152 - - - - ko00000,ko03029 - - - SCO1-SenC SRR25158195_k127_118406_3 522373.Smlt3430 6.106e-201 627.0 COG2890@1|root,COG2890@2|Bacteria,1MX8Q@1224|Proteobacteria,1RPHQ@1236|Gammaproteobacteria,1X4WV@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue prmB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.298 ko:K07320 - - R10806 RC00003,RC03279 ko00000,ko01000,ko03009 - - - MTS SRR25158195_k127_118406_2 522373.Smlt3429 1.327e-240 748.0 COG0082@1|root,COG0082@2|Bacteria,1MU98@1224|Proteobacteria,1RMQS@1236|Gammaproteobacteria,1X365@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system aroC GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 ko:K01736 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R01714 RC00586 ko00000,ko00001,ko00002,ko01000 - - - Chorismate_synt SRR25158195_k127_118406_6 454957.IA64_06860 2.445e-159 509.0 COG1052@1|root,COG1052@2|Bacteria,1MU2D@1224|Proteobacteria,1RMGZ@1236|Gammaproteobacteria,1X3VT@135614|Xanthomonadales 135614|Xanthomonadales CH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family - - 1.1.1.215,1.1.1.79,1.1.1.81 ko:K00090 ko00030,ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00030,map00260,map00620,map00630,map01100,map01110,map01120 - R00465,R01388,R01392,R01739 RC00031,RC00042,RC00084 ko00000,ko00001,ko01000 - - - 2-Hacid_dh,2-Hacid_dh_C SRR25158195_k127_118406_8 1429851.X548_12810 1.807e-126 406.0 COG0136@1|root,COG0136@2|Bacteria,1MUHG@1224|Proteobacteria,1RNB6@1236|Gammaproteobacteria,1X2X5@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate asd - 1.2.1.11 ko:K00133 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R02291 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC SRR25158195_k127_118406_10 1429851.X548_12810 2.566e-76 256.0 COG0136@1|root,COG0136@2|Bacteria,1MUHG@1224|Proteobacteria,1RNB6@1236|Gammaproteobacteria,1X2X5@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate asd - 1.2.1.11 ko:K00133 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00017,M00018,M00033,M00525,M00526,M00527 R02291 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC SRR25158195_k127_118406_1 522373.Smlt3426 3.694e-304 944.0 COG3170@1|root,COG3170@2|Bacteria,1MXV7@1224|Proteobacteria,1RMM5@1236|Gammaproteobacteria,1X4MQ@135614|Xanthomonadales 135614|Xanthomonadales NU Tfp pilus assembly protein FimV fimV - - ko:K08086 - - - - ko00000 - - - TPR_19 SRR25158195_k127_118406_11 391008.Smal_2852 1.384e-68 234.0 COG3324@1|root,COG3324@2|Bacteria,1N0AD@1224|Proteobacteria,1S8YM@1236|Gammaproteobacteria,1XANQ@135614|Xanthomonadales 135614|Xanthomonadales S Glyoxalase-like domain - - - ko:K06996 - - - - ko00000 - - - Glyoxalase SRR25158195_k127_118406_9 522373.Smlt3424 1.872e-89 295.0 COG0101@1|root,COG0101@2|Bacteria,1MUYI@1224|Proteobacteria,1RMK2@1236|Gammaproteobacteria,1X3F5@135614|Xanthomonadales 135614|Xanthomonadales J Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs truA GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 ko:K06173 - - - - ko00000,ko01000,ko03016 - - - PseudoU_synth_1 SRR25158195_k127_1188644_0 522373.Smlt3588 7.166e-208 651.0 COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X3KX@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - - - - - - - - - - 4HB_MCP_1,HAMP,MCPsignal SRR25158195_k127_1188644_1 1300345.LF41_2223 3.926e-35 145.0 2EMN6@1|root,33FAI@2|Bacteria,1NPHX@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_1191964_4 391008.Smal_2159 1.219e-66 234.0 COG4531@1|root,COG4531@2|Bacteria,1NMBU@1224|Proteobacteria,1T77K@1236|Gammaproteobacteria,1X8WS@135614|Xanthomonadales 135614|Xanthomonadales P Protein of unknown function (DUF2796) - - - - - - - - - - - - DUF2796 SRR25158195_k127_1191964_3 1163398.AJJP01000077_gene2582 6.304e-67 236.0 COG1136@1|root,COG1136@2|Bacteria,1RA1K@1224|Proteobacteria,1S275@1236|Gammaproteobacteria 1236|Gammaproteobacteria V abc transporter atp-binding protein - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran SRR25158195_k127_1191964_0 391008.Smal_2157 5.807e-224 700.0 COG0577@1|root,COG0577@2|Bacteria,1MVN1@1224|Proteobacteria,1RNVN@1236|Gammaproteobacteria,1X5FY@135614|Xanthomonadales 135614|Xanthomonadales V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD SRR25158195_k127_1191964_1 391008.Smal_2156 2.376e-91 311.0 COG3495@1|root,COG3495@2|Bacteria,1RB8H@1224|Proteobacteria,1S4CK@1236|Gammaproteobacteria,1X7YX@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3299) - - - ko:K09950 - - - - ko00000 - - - DUF3299 SRR25158195_k127_1191964_2 1429851.X548_09545 6.401e-82 276.0 COG3495@1|root,COG3495@2|Bacteria,1RB8H@1224|Proteobacteria,1S9ZC@1236|Gammaproteobacteria 1236|Gammaproteobacteria S protein conserved in bacteria - - - ko:K09950 - - - - ko00000 - - - DUF3299 SRR25158195_k127_1191964_5 391008.Smal_2154 3.858e-16 86.0 2ATB0@1|root,31IU1@2|Bacteria,1QGHE@1224|Proteobacteria,1TDX8@1236|Gammaproteobacteria,1XB4H@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1194298_1 59538.XP_005976310.1 5.471e-189 594.0 COG1678@1|root,KOG1567@2759|Eukaryota 2759|Eukaryota K ribonucleoside-diphosphate reductase activity RNR2 GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008199,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009215,GO:0009216,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009653,GO:0009987,GO:0012505,GO:0016043,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0022607,GO:0030587,GO:0031288,GO:0031967,GO:0031975,GO:0032502,GO:0032991,GO:0034641,GO:0034654,GO:0042278,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046062,GO:0046131,GO:0046385,GO:0046483,GO:0046704,GO:0046872,GO:0046914,GO:0046983,GO:0048856,GO:0051063,GO:0051186,GO:0051188,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0051703,GO:0051704,GO:0055086,GO:0055114,GO:0061731,GO:0065003,GO:0071704,GO:0071840,GO:0072521,GO:0072527,GO:0072528,GO:0090407,GO:0090702,GO:0099120,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204 1.17.4.1 ko:K10808 ko00230,ko00240,ko00480,ko00983,ko01100,ko04115,map00230,map00240,map00480,map00983,map01100,map04115 M00053 R02017,R02019,R02024,R08363,R08364,R11893 RC00613,RC01003 ko00000,ko00001,ko00002,ko01000,ko03400 - - iMM904.YGR180C,iMM904.YJL026W,iND750.YGR180C,iND750.YJL026W Ribonuc_red_sm SRR25158195_k127_1194298_0 522373.Smlt2842 0.0 1253.0 COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,1RQQ6@1236|Gammaproteobacteria,1XCFE@135614|Xanthomonadales 135614|Xanthomonadales F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides nrdA - 1.17.4.1 ko:K00525 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - Ribonuc_red_lgC,Ribonuc_red_lgN SRR25158195_k127_120210_4 391008.Smal_3080 5.1e-60 213.0 COG0494@1|root,COG0494@2|Bacteria,1RCX7@1224|Proteobacteria,1S3ZE@1236|Gammaproteobacteria,1X3RK@135614|Xanthomonadales 135614|Xanthomonadales L ADP-ribose diphosphatase nudE - - ko:K08312 ko00230,map00230 - R01054 RC00002 ko00000,ko00001,ko01000 - - - NUDIX SRR25158195_k127_120210_0 522373.Smlt3666 3.925e-305 937.0 COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,1RP0W@1236|Gammaproteobacteria,1X3CW@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family bioA - 2.6.1.62 ko:K00833 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R03231 RC00006,RC00887 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 SRR25158195_k127_120210_2 360094.PXO_01646 3.967e-92 318.0 COG1385@1|root,COG1385@2|Bacteria,1MXCU@1224|Proteobacteria,1RPBN@1236|Gammaproteobacteria,1X36H@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit - - 2.1.1.193 ko:K09761 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_RNA SRR25158195_k127_120210_3 522373.Smlt3668 1.537e-87 290.0 COG0835@1|root,COG0835@2|Bacteria,1NA8G@1224|Proteobacteria,1SCB2@1236|Gammaproteobacteria,1X6S4@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis signal transduction protein - - - ko:K06598 ko02020,ko02025,map02020,map02025 - - - ko00000,ko00001,ko02035 - - - CheW SRR25158195_k127_120210_1 522373.Smlt3669 2.717e-215 673.0 COG2201@1|root,COG2201@2|Bacteria,1QSWM@1224|Proteobacteria,1RWHF@1236|Gammaproteobacteria,1X3VN@135614|Xanthomonadales 135614|Xanthomonadales NT protein-glutamate methylesterase - - - ko:K06597 ko02020,map02020 M00507 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - CheB_methylest SRR25158195_k127_1202133_1 391008.Smal_3407 1.939e-166 525.0 COG5006@1|root,COG5006@2|Bacteria,1MXR7@1224|Proteobacteria,1RPFH@1236|Gammaproteobacteria,1X641@135614|Xanthomonadales 135614|Xanthomonadales S EamA-like transporter family - - - ko:K11939 - - - - ko00000,ko02000 2.A.7.3.6 - - EamA SRR25158195_k127_1202133_3 391008.Smal_3408 6.696e-84 281.0 COG1522@1|root,COG1522@2|Bacteria,1RHI9@1224|Proteobacteria,1S9R5@1236|Gammaproteobacteria,1XB2Z@135614|Xanthomonadales 135614|Xanthomonadales K helix_turn_helix ASNC type - - - - - - - - - - - - AsnC_trans_reg,HTH_24,HTH_AsnC-type SRR25158195_k127_1202133_2 1429851.X548_15685 3.407e-97 321.0 COG0739@1|root,COG0739@2|Bacteria,1RK0U@1224|Proteobacteria,1SYMP@1236|Gammaproteobacteria,1XCU1@135614|Xanthomonadales 135614|Xanthomonadales M Peptidase family M23 - - - ko:K21472 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_M23 SRR25158195_k127_1202133_0 522373.Smlt3999 5.246e-280 862.0 COG4773@1|root,COG4773@2|Bacteria,1MW5E@1224|Proteobacteria,1RMBD@1236|Gammaproteobacteria,1X3NJ@135614|Xanthomonadales 135614|Xanthomonadales P TonB-dependent siderophore receptor fhuE - - ko:K16088 - - - - ko00000,ko02000 1.B.14.1.10,1.B.14.1.3,1.B.14.1.8 - - Plug,TonB_dep_Rec SRR25158195_k127_1210361_0 1429851.X548_07775 1.038e-147 467.0 COG4229@1|root,COG4229@2|Bacteria,1R3V9@1224|Proteobacteria,1RP5Y@1236|Gammaproteobacteria,1X4M6@135614|Xanthomonadales 135614|Xanthomonadales E Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene) mtnC GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0019509,GO:0019752,GO:0042578,GO:0043094,GO:0043102,GO:0043436,GO:0043874,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.77 ko:K09880 ko00270,ko01100,map00270,map01100 M00034 R07395 RC02779 ko00000,ko00001,ko00002,ko01000 - - - Hydrolase SRR25158195_k127_1210361_1 391008.Smal_1781 1.184e-119 385.0 COG1791@1|root,COG1791@2|Bacteria,1RCZD@1224|Proteobacteria,1S42U@1236|Gammaproteobacteria,1X43T@135614|Xanthomonadales 135614|Xanthomonadales S Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway mtnD GO:0000096,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0010309,GO:0016491,GO:0016701,GO:0016702,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0051213,GO:0055114,GO:0071704,GO:1901564,GO:1901605 1.13.11.53,1.13.11.54 ko:K08967 ko00270,ko01100,map00270,map01100 M00034 R07363,R07364 RC01866,RC02018,RC02118 ko00000,ko00001,ko00002,ko01000 - - - ARD SRR25158195_k127_1210361_2 391008.Smal_1782 1.103e-98 322.0 COG0235@1|root,COG0235@2|Bacteria,1RE8T@1224|Proteobacteria,1S3UF@1236|Gammaproteobacteria,1X4MF@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) mtnB - 4.2.1.109 ko:K08964 ko00270,ko01100,map00270,map01100 M00034 R07392 RC01939 ko00000,ko00001,ko00002,ko01000 - - - Aldolase_II SRR25158195_k127_1210640_0 391008.Smal_2904 0.0 1092.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1X2YV@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1210640_1 391008.Smal_2903 4.156e-92 307.0 COG0810@1|root,COG0810@2|Bacteria,1MZPX@1224|Proteobacteria,1S24U@1236|Gammaproteobacteria,1X7K5@135614|Xanthomonadales 135614|Xanthomonadales M Periplasmic protein TonB links inner and outer membranes tonB4 - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C SRR25158195_k127_1210640_2 391008.Smal_2902 3.748e-81 271.0 COG2968@1|root,COG2968@2|Bacteria,1RH7T@1224|Proteobacteria,1RP7T@1236|Gammaproteobacteria,1X44K@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF541) - - - ko:K09807 - - - - ko00000 - - - SIMPL SRR25158195_k127_1213228_3 1429851.X548_12570 5.937e-122 398.0 COG3710@1|root,COG3710@2|Bacteria,1N2RT@1224|Proteobacteria,1SBVW@1236|Gammaproteobacteria,1X9I7@135614|Xanthomonadales 135614|Xanthomonadales K COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - TPR_16,Trans_reg_C SRR25158195_k127_1213228_0 522373.Smlt3385 0.0 1338.0 COG1185@1|root,COG1185@2|Bacteria,1MVB9@1224|Proteobacteria,1RNBF@1236|Gammaproteobacteria,1X3VD@135614|Xanthomonadales 135614|Xanthomonadales J Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction pnp - 2.7.7.8 ko:K00962 ko00230,ko00240,ko03018,map00230,map00240,map03018 M00394 R00437,R00438,R00439,R00440 RC02795 ko00000,ko00001,ko00002,ko01000,ko03016,ko03019 - - - KH_1,PNPase,RNase_PH,RNase_PH_C,S1 SRR25158195_k127_1213228_5 1429851.X548_12580 8.376e-46 166.0 COG0184@1|root,COG0184@2|Bacteria,1MZ2W@1224|Proteobacteria,1S8U6@1236|Gammaproteobacteria,1X7EJ@135614|Xanthomonadales 135614|Xanthomonadales J Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome rpsO GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02956 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S15 SRR25158195_k127_1213228_2 391008.Smal_2813 2.378e-176 556.0 COG0130@1|root,COG0130@2|Bacteria,1MV0N@1224|Proteobacteria,1RMKP@1236|Gammaproteobacteria,1X37T@135614|Xanthomonadales 135614|Xanthomonadales J Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs truB GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 ko:K03177 - - - - ko00000,ko01000,ko03016 - - - TruB-C_2,TruB_C,TruB_C_2,TruB_N SRR25158195_k127_1213228_4 522373.Smlt3388 1.784e-74 251.0 COG0858@1|root,COG0858@2|Bacteria,1MZPE@1224|Proteobacteria,1S9AF@1236|Gammaproteobacteria,1X6UQ@135614|Xanthomonadales 135614|Xanthomonadales J One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA rbfA - - ko:K02834 - - - - ko00000,ko03009 - - - RBFA SRR25158195_k127_1213228_1 522373.Smlt3389 2.304e-311 955.0 COG0532@1|root,COG0532@2|Bacteria,1MV26@1224|Proteobacteria,1RM9X@1236|Gammaproteobacteria,1X4G8@135614|Xanthomonadales 135614|Xanthomonadales J One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex infB - - ko:K02519 - - - - ko00000,ko03012,ko03029 - - - GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc SRR25158195_k127_1227614_0 391008.Smal_3114 7.952e-156 492.0 COG5504@1|root,COG5504@2|Bacteria,1PNSE@1224|Proteobacteria 1224|Proteobacteria O Zn-dependent protease - - - - - - - - - - - - DUF2268 SRR25158195_k127_1227614_2 522373.Smlt3700 8.206e-135 431.0 COG0603@1|root,COG0603@2|Bacteria,1MU5V@1224|Proteobacteria,1RMG9@1236|Gammaproteobacteria,1X3TT@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) queC - 6.3.4.20 ko:K06920 ko00790,ko01100,map00790,map01100 - R09978 RC00959 ko00000,ko00001,ko01000,ko03016 - - - QueC SRR25158195_k127_1227614_1 522373.Smlt3701 3.396e-153 484.0 COG0602@1|root,COG0602@2|Bacteria,1MUJ2@1224|Proteobacteria,1RNQZ@1236|Gammaproteobacteria,1X4FR@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds queE - 4.3.99.3 ko:K10026 ko00790,ko01100,map00790,map01100 - R10002 RC02989 ko00000,ko00001,ko01000,ko03016 - - - Fer4_14,Radical_SAM SRR25158195_k127_1231721_4 391008.Smal_0699 1.429e-63 222.0 COG3170@1|root,COG3170@2|Bacteria,1QV1N@1224|Proteobacteria,1T49N@1236|Gammaproteobacteria,1XD92@135614|Xanthomonadales 135614|Xanthomonadales NU Protein of unknown function (DUF1631) - - - - - - - - - - - - DUF1631 SRR25158195_k127_1231721_2 391008.Smal_0698 3.772e-114 370.0 COG0778@1|root,COG0778@2|Bacteria,1PKUV@1224|Proteobacteria,1RNQG@1236|Gammaproteobacteria,1XCMQ@135614|Xanthomonadales 135614|Xanthomonadales C nitroreductase - - - - - - - - - - - - Nitroreductase SRR25158195_k127_1231721_0 391008.Smal_0697 3.513e-198 629.0 COG0258@1|root,COG0258@2|Bacteria,1RAAR@1224|Proteobacteria,1RN1S@1236|Gammaproteobacteria,1X448@135614|Xanthomonadales 135614|Xanthomonadales L Exodeoxyribonuclease IX exo - - - - - - - - - - - 5_3_exonuc,5_3_exonuc_N SRR25158195_k127_1231721_3 160492.XF_2008 5.799e-79 279.0 COG0494@1|root,COG0494@2|Bacteria,1RI3B@1224|Proteobacteria,1S6HR@1236|Gammaproteobacteria,1X60F@135614|Xanthomonadales 135614|Xanthomonadales L DNA mismatch repair protein MutT - - 3.6.1.13 ko:K01515 ko00230,map00230 - R01054 RC00002 ko00000,ko00001,ko01000 - - - NUDIX SRR25158195_k127_1231721_1 522373.Smlt0846 2.225e-164 518.0 COG3931@1|root,COG3931@2|Bacteria,1QI71@1224|Proteobacteria,1S6A7@1236|Gammaproteobacteria,1XC35@135614|Xanthomonadales 135614|Xanthomonadales E N-formylglutamate amidohydrolase - - - - - - - - - - - - FGase SRR25158195_k127_123308_1 1429851.X548_09250 9.045e-73 250.0 COG0702@1|root,COG0702@2|Bacteria,1QR3E@1224|Proteobacteria,1S37H@1236|Gammaproteobacteria,1X7W7@135614|Xanthomonadales 135614|Xanthomonadales GM epimerase - - - - - - - - - - - - NAD_binding_10 SRR25158195_k127_123308_0 522373.Smlt2380 0.0 1010.0 COG0745@1|root,COG0784@1|root,COG4191@1|root,COG0745@2|Bacteria,COG0784@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,1RP53@1236|Gammaproteobacteria,1X55J@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,PAS_4,Response_reg SRR25158195_k127_1233508_2 1429851.X548_18260 1.176e-77 261.0 COG0451@1|root,COG0451@2|Bacteria,1MWVJ@1224|Proteobacteria,1RNDT@1236|Gammaproteobacteria,1X66F@135614|Xanthomonadales 135614|Xanthomonadales GM NAD dependent epimerase/dehydratase family - - - - - - - - - - - - Epimerase,NAD_binding_10,TrkA_N SRR25158195_k127_1233508_1 391008.Smal_3885 8.386e-171 537.0 COG0084@1|root,COG0084@2|Bacteria,1MXN8@1224|Proteobacteria,1RNCC@1236|Gammaproteobacteria,1X3N8@135614|Xanthomonadales 135614|Xanthomonadales L Preprotein translocase subunit TatD tatD - - ko:K03424 - - - - ko00000,ko01000 - - - TatD_DNase SRR25158195_k127_1233508_0 522373.Smlt4524 1.175e-241 754.0 COG1643@1|root,COG1643@2|Bacteria,1MUEQ@1224|Proteobacteria,1RR1B@1236|Gammaproteobacteria,1X443@135614|Xanthomonadales 135614|Xanthomonadales L Helicase hrpB - 3.6.4.13 ko:K03579 - - - - ko00000,ko01000 - - - DEAD,HA2,Helicase_C,HrpB_C SRR25158195_k127_1244692_0 522373.Smlt2373 8.451e-213 664.0 COG2907@1|root,COG2907@2|Bacteria,1MV4Z@1224|Proteobacteria,1RP4P@1236|Gammaproteobacteria,1X4I0@135614|Xanthomonadales 135614|Xanthomonadales S NAD FAD-binding protein - - - ko:K06954 - - - - ko00000 - - - Amino_oxidase,NAD_binding_8 SRR25158195_k127_1244692_1 522373.Smlt2374 2.975e-181 571.0 COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,1RM88@1236|Gammaproteobacteria,1X4PF@135614|Xanthomonadales 135614|Xanthomonadales I fatty acid desaturase desC - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase SRR25158195_k127_1244692_2 391008.Smal_1958 1.774e-104 346.0 2E5SG@1|root,330GY@2|Bacteria,1NB2M@1224|Proteobacteria,1SCUK@1236|Gammaproteobacteria,1X791@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1244692_3 391008.Smal_1959 7.529e-80 279.0 COG1595@1|root,COG1595@2|Bacteria,1RHRR@1224|Proteobacteria,1S6IV@1236|Gammaproteobacteria,1X6N6@135614|Xanthomonadales 135614|Xanthomonadales K Sigma-70, region 4 - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_1251964_2 391008.Smal_3588 4.158e-99 325.0 COG2922@1|root,COG2922@2|Bacteria,1RD5F@1224|Proteobacteria,1S43X@1236|Gammaproteobacteria,1X63Y@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the Smg family smg - - ko:K03747 - - - - ko00000 - - - DUF494 SRR25158195_k127_1251964_0 522373.Smlt4182 2.135e-132 425.0 COG4969@1|root,COG4969@2|Bacteria,1PD0T@1224|Proteobacteria,1SY74@1236|Gammaproteobacteria,1X7AI@135614|Xanthomonadales 135614|Xanthomonadales NU Tfp pilus assembly protein, major pilin PilA - - - ko:K02650 ko02020,map02020 - - - ko00000,ko00001,ko02035,ko02044 3.A.15.2 - - DUF4339,Pilin SRR25158195_k127_1251964_1 522373.Smlt4183 1.666e-110 361.0 COG1714@1|root,COG1714@2|Bacteria,1N1XF@1224|Proteobacteria,1SDY3@1236|Gammaproteobacteria,1X5Z4@135614|Xanthomonadales 135614|Xanthomonadales NU membrane protein domain - - - - - - - - - - - - DUF4339,RDD SRR25158195_k127_1258327_1 391008.Smal_2602 2.857e-97 333.0 2E62J@1|root,330RP@2|Bacteria,1N7HR@1224|Proteobacteria,1SF9E@1236|Gammaproteobacteria,1X908@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2939) - - - - - - - - - - - - DUF2939 SRR25158195_k127_1258327_0 325777.GW15_0207175 3.763e-171 542.0 COG0667@1|root,COG0667@2|Bacteria,1PDY4@1224|Proteobacteria,1RQYV@1236|Gammaproteobacteria 1236|Gammaproteobacteria C Aldo Keto reductase - - - - - - - - - - - - Aldo_ket_red SRR25158195_k127_1258327_2 391008.Smal_2601 4.278e-40 148.0 COG5587@1|root,COG5587@2|Bacteria,1R8B4@1224|Proteobacteria,1S1WW@1236|Gammaproteobacteria,1XD2G@135614|Xanthomonadales 135614|Xanthomonadales S Conserved hypothetical protein (DUF2461) - - - - - - - - - - - - DUF2461 SRR25158195_k127_1268003_1 1442599.JAAN01000041_gene3088 9.219e-91 304.0 COG0657@1|root,COG0657@2|Bacteria,1N5QB@1224|Proteobacteria,1RS7Q@1236|Gammaproteobacteria,1X5Q0@135614|Xanthomonadales 135614|Xanthomonadales I Esterase lipase - - - - - - - - - - - - Abhydrolase_3,Peptidase_S9 SRR25158195_k127_1268003_0 1442599.JAAN01000041_gene3087 4.135e-195 625.0 COG3746@1|root,COG3746@2|Bacteria,1N5TT@1224|Proteobacteria,1S11Y@1236|Gammaproteobacteria,1X55A@135614|Xanthomonadales 135614|Xanthomonadales P Phosphate-selective porin O and P - - - ko:K07221 - - - - ko00000,ko02000 1.B.5.1 - - Porin_O_P SRR25158195_k127_1268003_2 522373.Smlt4157 8.106e-41 159.0 COG2916@1|root,COG2916@2|Bacteria,1QFFN@1224|Proteobacteria,1TCPV@1236|Gammaproteobacteria,1X8XS@135614|Xanthomonadales 135614|Xanthomonadales S H-NS histone family - - - ko:K03746 - - - - ko00000,ko03036,ko03400 - - - Histone_HNS SRR25158195_k127_1268003_3 1445613.JALM01000074_gene6653 1.105e-20 96.0 COG4409@1|root,COG4409@2|Bacteria 2|Bacteria G exo-alpha-(2->6)-sialidase activity nanA GO:0001573,GO:0003674,GO:0003824,GO:0004308,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006687,GO:0006689,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009987,GO:0016020,GO:0016042,GO:0016052,GO:0016787,GO:0016798,GO:0016997,GO:0019377,GO:0030149,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044464,GO:0046466,GO:0046479,GO:0046514,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509 3.2.1.18 ko:K01186 ko00511,ko00600,ko04142,map00511,map00600,map04142 - R04018 RC00028,RC00077 ko00000,ko00001,ko01000,ko02042 - GH33 - BNR_2,Gram_pos_anchor,Sialidase,YSIRK_signal SRR25158195_k127_1268872_4 522373.Smlt2780 5.721e-63 217.0 COG0303@1|root,COG0303@2|Bacteria,1MVD5@1224|Proteobacteria,1SN7Y@1236|Gammaproteobacteria,1X4R2@135614|Xanthomonadales 135614|Xanthomonadales H molybdopterin biosynthesis moeA2 - 2.10.1.1 ko:K03750 ko00790,ko01100,map00790,map01100 - R09735 RC03462 ko00000,ko00001,ko01000 - - - MoCF_biosynth,MoeA_C,MoeA_N SRR25158195_k127_1268872_1 391008.Smal_2243 3.045e-199 624.0 COG0315@1|root,COG0521@1|root,COG0315@2|Bacteria,COG0521@2|Bacteria,1RCYZ@1224|Proteobacteria,1S3ST@1236|Gammaproteobacteria,1X6FA@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) moaC - 4.6.1.17 ko:K03637 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R11372 RC03425 ko00000,ko00001,ko01000 - - - MoCF_biosynth,MoaC SRR25158195_k127_1268872_0 391008.Smal_2244 2.07e-200 629.0 COG2896@1|root,COG2896@2|Bacteria,1MW3W@1224|Proteobacteria,1RR68@1236|Gammaproteobacteria,1X46A@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate moaA - 4.1.99.22 ko:K03639 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09394 RC03420 ko00000,ko00001,ko01000 - - - Fer4_12,Mob_synth_C,Radical_SAM SRR25158195_k127_1268872_3 1163409.UUA_06199 1.381e-109 360.0 COG1376@1|root,COG1376@2|Bacteria,1R7VK@1224|Proteobacteria,1RZ5W@1236|Gammaproteobacteria,1X52X@135614|Xanthomonadales 135614|Xanthomonadales S ErfK ybiS ycfS ynhG family protein - - - - - - - - - - - - - SRR25158195_k127_1268872_5 1429851.X548_19870 2.366e-37 143.0 2ANW7@1|root,31DWS@2|Bacteria,1QB78@1224|Proteobacteria,1T6RH@1236|Gammaproteobacteria,1X7ZP@135614|Xanthomonadales 135614|Xanthomonadales - - - - - ko:K06078 - - - - ko00000,ko01011 - - - - SRR25158195_k127_1268872_2 1169143.KB911049_gene5657 4.815e-148 477.0 COG0477@1|root,COG0477@2|Bacteria,1MWB4@1224|Proteobacteria,2WHAD@28216|Betaproteobacteria,1KIJH@119060|Burkholderiaceae 28216|Betaproteobacteria EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_1269465_0 391008.Smal_2390 2.476e-122 398.0 COG3016@1|root,COG3016@2|Bacteria,1R5UH@1224|Proteobacteria,1RQXM@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Iron-regulated protein cjrA - - - - - - - - - - - Cofac_haem_bdg SRR25158195_k127_1269465_1 1331060.RLDS_12505 9.18e-24 109.0 COG0810@1|root,COG0810@2|Bacteria,1RFKM@1224|Proteobacteria,2U7UJ@28211|Alphaproteobacteria,2K7Q6@204457|Sphingomonadales 204457|Sphingomonadales M TonB C terminal - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C SRR25158195_k127_1286177_4 522373.Smlt4130 1.106e-74 251.0 COG3279@1|root,COG3279@2|Bacteria,1MUE8@1224|Proteobacteria,1RMJJ@1236|Gammaproteobacteria,1X3HP@135614|Xanthomonadales 135614|Xanthomonadales KT Response regulator of the LytR AlgR family - - - ko:K08083 ko02020,map02020 M00493 - - ko00000,ko00001,ko00002,ko02022 - - - LytTR,Response_reg SRR25158195_k127_1286177_1 391008.Smal_3530 4.446e-180 568.0 COG0181@1|root,COG0181@2|Bacteria,1MU56@1224|Proteobacteria,1RMQ8@1236|Gammaproteobacteria,1X4A7@135614|Xanthomonadales 135614|Xanthomonadales H Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps hemC GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 ko:K01749 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00084 RC02317 ko00000,ko00001,ko00002,ko01000 - - - Porphobil_deam,Porphobil_deamC SRR25158195_k127_1286177_2 1429851.X548_16305 3.06e-151 507.0 COG3137@1|root,COG3137@2|Bacteria,1MWI4@1224|Proteobacteria,1RN4J@1236|Gammaproteobacteria,1X4ZG@135614|Xanthomonadales 135614|Xanthomonadales M salt-induced outer membrane protein - - - ko:K07283 - - - - ko00000 - - - DUF481 SRR25158195_k127_1286177_0 522373.Smlt4127 1.819e-220 689.0 COG2378@1|root,COG2378@2|Bacteria,1P2ZE@1224|Proteobacteria,1RYHJ@1236|Gammaproteobacteria,1X3DE@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_11,WYL SRR25158195_k127_1286177_3 1429851.X548_16290 6.097e-143 455.0 COG1464@1|root,COG1464@2|Bacteria,1MUVY@1224|Proteobacteria,1RS3R@1236|Gammaproteobacteria,1X36Y@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the nlpA lipoprotein family - - - ko:K02073 ko02010,map02010 M00238 - - ko00000,ko00001,ko00002,ko02000 3.A.1.24 - - Lipoprotein_9 SRR25158195_k127_1293073_0 522373.Smlt2241 4.704e-320 984.0 COG1048@1|root,COG1048@2|Bacteria,1MU9T@1224|Proteobacteria,1RN5I@1236|Gammaproteobacteria,1X3SP@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the isomerization of citrate to isocitrate via cis-aconitate acnA - 4.2.1.3 ko:K01681 ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173,M00740 R01324,R01325,R01900 RC00497,RC00498,RC00618 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C SRR25158195_k127_1293073_3 522373.Smlt2576 6.669e-188 587.0 COG0583@1|root,COG0583@2|Bacteria,1MUWX@1224|Proteobacteria,1RYWC@1236|Gammaproteobacteria,1X7R3@135614|Xanthomonadales 135614|Xanthomonadales K LysR family transcriptional regulator ybhD - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_1293073_1 522373.Smlt2575 2.258e-198 630.0 COG2828@1|root,COG2828@2|Bacteria,1MXVV@1224|Proteobacteria,1RNE6@1236|Gammaproteobacteria,1X4CV@135614|Xanthomonadales 135614|Xanthomonadales S PrpF protein fldA - 5.3.2.8 ko:K16514 ko00362,ko01120,map00362,map01120 - R07839 RC02426 ko00000,ko00001,ko01000 - - - PrpF SRR25158195_k127_1293073_2 1429851.X548_08685 2.022e-189 595.0 COG0715@1|root,COG0715@2|Bacteria,1MVZE@1224|Proteobacteria,1SF34@1236|Gammaproteobacteria,1XAWQ@135614|Xanthomonadales 135614|Xanthomonadales P NMT1/THI5 like - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1 SRR25158195_k127_1293327_8 522373.Smlt0919 2.917e-33 128.0 COG0199@1|root,COG0199@2|Bacteria,1MZDT@1224|Proteobacteria,1S62N@1236|Gammaproteobacteria,1X6WF@135614|Xanthomonadales 135614|Xanthomonadales J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site rpsN GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02954 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S14 SRR25158195_k127_1293327_4 863365.XHC_1015 6.536e-78 265.0 COG0096@1|root,COG0096@2|Bacteria,1RDG3@1224|Proteobacteria,1S452@1236|Gammaproteobacteria,1X6IW@135614|Xanthomonadales 135614|Xanthomonadales J One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit rpsH GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02994 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S8 SRR25158195_k127_1293327_2 522373.Smlt0921 7.114e-100 327.0 COG0097@1|root,COG0097@2|Bacteria,1R9YZ@1224|Proteobacteria,1S1Z1@1236|Gammaproteobacteria,1X3Q7@135614|Xanthomonadales 135614|Xanthomonadales J This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center rplF GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02933 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L6 SRR25158195_k127_1293327_6 522373.Smlt0922 4.104e-62 216.0 COG0256@1|root,COG0256@2|Bacteria,1RGY7@1224|Proteobacteria,1S5V2@1236|Gammaproteobacteria,1X6HE@135614|Xanthomonadales 135614|Xanthomonadales J This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance rplR GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - ko:K02881 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L18p SRR25158195_k127_1293327_1 522373.Smlt0923 1.644e-105 344.0 COG0098@1|root,COG0098@2|Bacteria,1MUS4@1224|Proteobacteria,1RNEV@1236|Gammaproteobacteria,1X5KF@135614|Xanthomonadales 135614|Xanthomonadales J Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body rpsE GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02988 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S5,Ribosomal_S5_C SRR25158195_k127_1293327_9 1385515.N791_01460 4.388e-25 106.0 COG1841@1|root,COG1841@2|Bacteria,1QBAT@1224|Proteobacteria,1T6V9@1236|Gammaproteobacteria,1X885@135614|Xanthomonadales 135614|Xanthomonadales J Ribosomal protein L30 rpmD GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02907 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L30 SRR25158195_k127_1293327_3 522373.Smlt0925 4.757e-81 271.0 COG0200@1|root,COG0200@2|Bacteria,1RDC8@1224|Proteobacteria,1S3P6@1236|Gammaproteobacteria,1X6FU@135614|Xanthomonadales 135614|Xanthomonadales J Binds to the 23S rRNA rplO GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02876 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27A SRR25158195_k127_1293327_0 522373.Smlt0926 3.465e-284 874.0 COG0201@1|root,COG0201@2|Bacteria,1MVU7@1224|Proteobacteria,1RNJV@1236|Gammaproteobacteria,1X39Y@135614|Xanthomonadales 135614|Xanthomonadales U The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently secY - - ko:K03076 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5 - - SecY SRR25158195_k127_1293327_5 925775.XVE_2723 1.85e-72 245.0 COG0099@1|root,COG0099@2|Bacteria,1RD1G@1224|Proteobacteria,1S3NX@1236|Gammaproteobacteria,1X6GV@135614|Xanthomonadales 135614|Xanthomonadales J Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits rpsM GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02952 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S13 SRR25158195_k127_1293327_7 1429851.X548_02445 9.539e-45 162.0 COG0100@1|root,COG0100@2|Bacteria,1RD0A@1224|Proteobacteria,1S3Q2@1236|Gammaproteobacteria,1X6JV@135614|Xanthomonadales 135614|Xanthomonadales J Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome rpsK GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02948 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S11 SRR25158195_k127_1296121_6 391008.Smal_2910 1.538e-69 239.0 COG1466@1|root,COG1466@2|Bacteria,1MWYT@1224|Proteobacteria,1RQRE@1236|Gammaproteobacteria,1X3BE@135614|Xanthomonadales 135614|Xanthomonadales L dna polymerase III delta subunit holA - 2.7.7.7 ko:K02340 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delt_C,DNA_pol3_delta SRR25158195_k127_1296121_4 522373.Smlt3484 3.796e-102 334.0 COG2980@1|root,COG2980@2|Bacteria,1NGPX@1224|Proteobacteria,1SGKQ@1236|Gammaproteobacteria,1X6SK@135614|Xanthomonadales 135614|Xanthomonadales M Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane lptE - - ko:K03643 - - - - ko00000,ko02000 1.B.42.1 - - LptE SRR25158195_k127_1296121_0 522373.Smlt3485 0.0 1790.0 COG0495@1|root,COG0495@2|Bacteria,1MV47@1224|Proteobacteria,1RP14@1236|Gammaproteobacteria,1X3DK@135614|Xanthomonadales 135614|Xanthomonadales J due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm leuS GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 ko:K01869 ko00970,map00970 M00359,M00360 R03657 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Anticodon_1,tRNA-synt_1,tRNA-synt_1_2 SRR25158195_k127_1296121_5 522373.Smlt3486 1.981e-97 334.0 2ANYX@1|root,31DZX@2|Bacteria,1QB9Z@1224|Proteobacteria,1T6UK@1236|Gammaproteobacteria,1X7GH@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF998) - - - - - - - - - - - - DUF998 SRR25158195_k127_1296121_3 522373.Smlt3487 4.269e-147 522.0 COG3118@1|root,COG3118@2|Bacteria,1MV0R@1224|Proteobacteria,1RMSQ@1236|Gammaproteobacteria,1X37Y@135614|Xanthomonadales 135614|Xanthomonadales O Thioredoxin - - - ko:K05838 - - - - ko00000,ko03110 - - - TPR_19,TPR_20,Thioredoxin SRR25158195_k127_1296121_1 391008.Smal_2915 4.763e-320 985.0 COG1652@1|root,COG4254@1|root,COG1652@2|Bacteria,COG4254@2|Bacteria,1NKA2@1224|Proteobacteria,1S1E7@1236|Gammaproteobacteria,1X3DI@135614|Xanthomonadales 135614|Xanthomonadales S FecR protein - - - - - - - - - - - - FecR,LysM SRR25158195_k127_1296121_2 391008.Smal_2916 2.055e-312 964.0 COG2199@1|root,COG4252@1|root,COG3706@2|Bacteria,COG4252@2|Bacteria,1R7HC@1224|Proteobacteria,1SZ7E@1236|Gammaproteobacteria,1X5WR@135614|Xanthomonadales 135614|Xanthomonadales T CHASE2 - - - - - - - - - - - - CHASE2,GGDEF SRR25158195_k127_1296121_7 391008.Smal_2917 8.423e-54 189.0 COG2050@1|root,COG2050@2|Bacteria,1RH0Z@1224|Proteobacteria,1S5W6@1236|Gammaproteobacteria,1X6FN@135614|Xanthomonadales 135614|Xanthomonadales Q Domain of unknown function (DUF4442) - - - - - - - - - - - - DUF4442 SRR25158195_k127_1318805_2 391008.Smal_3051 5.343e-60 207.0 COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,1RXCB@1236|Gammaproteobacteria,1X4WJ@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the AB hydrolase superfamily. MetX family metXS GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.31 ko:K00641 ko00270,ko01100,ko01130,map00270,map01100,map01130 - R01776 RC00004,RC00041 ko00000,ko00001,ko01000 - - - Abhydrolase_1 SRR25158195_k127_1318805_0 391008.Smal_3050 1.429e-252 786.0 COG0626@1|root,COG0626@2|Bacteria,1MU57@1224|Proteobacteria,1RMCV@1236|Gammaproteobacteria,1X4AH@135614|Xanthomonadales 135614|Xanthomonadales E cystathionine metB - 2.5.1.48 ko:K01739 ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230 M00017 R00999,R01288,R02508,R03217,R03260,R04944,R04945,R04946 RC00020,RC00056,RC00069,RC00420,RC02848,RC02866 ko00000,ko00001,ko00002,ko01000 - - - Cys_Met_Meta_PP SRR25158195_k127_1318805_1 522373.Smlt3633 1.046e-204 642.0 COG0460@1|root,COG0460@2|Bacteria,1MUDC@1224|Proteobacteria,1RPEU@1236|Gammaproteobacteria,1X5F4@135614|Xanthomonadales 135614|Xanthomonadales E homoserine dehydrogenase metL - 1.1.1.3,2.7.2.4 ko:K00003,ko:K12524 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00017,M00018,M00526,M00527 R00480,R01773,R01775 RC00002,RC00043,RC00087 ko00000,ko00001,ko00002,ko01000 - - - Homoserine_dh,NAD_binding_3 SRR25158195_k127_1320124_2 1429851.X548_20775 1.004e-202 634.0 COG2216@1|root,COG2216@2|Bacteria,1MU7D@1224|Proteobacteria,1RPPF@1236|Gammaproteobacteria,1X2YJ@135614|Xanthomonadales 135614|Xanthomonadales P Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system kdpB - 3.6.3.12 ko:K01547 ko02020,map02020 - - - ko00000,ko00001,ko01000 3.A.3.7 - - E1-E2_ATPase,Hydrolase SRR25158195_k127_1320124_4 391008.Smal_0289 2.272e-109 367.0 COG2156@1|root,COG2156@2|Bacteria,1RABG@1224|Proteobacteria,1S2B0@1236|Gammaproteobacteria,1X6DA@135614|Xanthomonadales 135614|Xanthomonadales P Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex kdpC - 3.6.3.12 ko:K01548 ko02020,map02020 - - - ko00000,ko00001,ko01000 3.A.3.7 - - KdpC SRR25158195_k127_1320124_0 1429851.X548_20765 0.0 1650.0 COG0642@1|root,COG2205@2|Bacteria,1MUZQ@1224|Proteobacteria,1RMZT@1236|Gammaproteobacteria,1X3FI@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase kdpD - 2.7.13.3 ko:K07646 ko02020,map02020 M00454 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - DUF4118,GAF_3,HATPase_c,HisKA,KdpD,Usp SRR25158195_k127_1320124_3 522373.Smlt0404 2.628e-138 441.0 COG0745@1|root,COG0745@2|Bacteria,1MWZ5@1224|Proteobacteria,1RNY2@1236|Gammaproteobacteria,1X4EK@135614|Xanthomonadales 135614|Xanthomonadales T regulator kdpE - - ko:K07667 ko02020,ko02024,map02020,map02024 M00454 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_1320124_1 522373.Smlt0403 0.0 1252.0 COG1109@1|root,COG1109@2|Bacteria,1MUA5@1224|Proteobacteria,1RMU8@1236|Gammaproteobacteria,1X4Z1@135614|Xanthomonadales 135614|Xanthomonadales G phosphomannomutase - - 5.4.2.2,5.4.2.8 ko:K15778 ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130 M00114 R00959,R01057,R01818,R08639 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV SRR25158195_k127_1322077_3 1227739.Hsw_1394 2.018e-35 136.0 COG3507@1|root,COG3507@2|Bacteria,4NEIZ@976|Bacteroidetes,47NFQ@768503|Cytophagia 976|Bacteroidetes G Belongs to the glycosyl hydrolase 43 family - - - - - - - - - - - - Glyco_hydro_43 SRR25158195_k127_1322077_2 1429851.X548_15590 4.56e-49 175.0 COG1937@1|root,COG1937@2|Bacteria,1N6ZN@1224|Proteobacteria,1S6I2@1236|Gammaproteobacteria,1X7IP@135614|Xanthomonadales 135614|Xanthomonadales S Metal-sensitive transcriptional repressor frmR - - - - - - - - - - - Trns_repr_metal SRR25158195_k127_1322077_0 1429851.X548_15585 2.035e-244 756.0 COG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,1RNQ4@1236|Gammaproteobacteria,1X3UT@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily frmA - 1.1.1.1,1.1.1.284 ko:K00121 ko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204 - R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273 ko00000,ko00001,ko01000 - - - ADH_N,ADH_zinc_N SRR25158195_k127_1322077_1 522373.Smlt3976 2.189e-171 539.0 COG0627@1|root,COG0627@2|Bacteria,1MUID@1224|Proteobacteria,1RMR3@1236|Gammaproteobacteria,1X2XZ@135614|Xanthomonadales 135614|Xanthomonadales S Serine hydrolase involved in the detoxification of formaldehyde fghA - 3.1.2.12 ko:K01070 ko00680,ko01120,ko01200,map00680,map01120,map01200 - R00527 RC00167,RC00320 ko00000,ko00001,ko01000 - CE1 - Esterase SRR25158195_k127_1323374_2 1121015.N789_12495 1.979e-27 114.0 COG0318@1|root,COG0764@1|root,COG0318@2|Bacteria,COG0764@2|Bacteria,1MXPB@1224|Proteobacteria,1RRD5@1236|Gammaproteobacteria,1X4JQ@135614|Xanthomonadales 135614|Xanthomonadales IQ Acyl-coenzyme A synthetases AMP-(fatty) acid ligases - - - - - - - - - - - - AMP-binding,AMP-binding_C SRR25158195_k127_1323374_0 522373.Smlt4567 6.461e-152 483.0 COG1216@1|root,COG1216@2|Bacteria,1QVEM@1224|Proteobacteria,1T2CN@1236|Gammaproteobacteria,1X4G9@135614|Xanthomonadales 135614|Xanthomonadales S Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 SRR25158195_k127_1323374_1 391008.Smal_3918 1.86e-34 134.0 COG4261@1|root,COG4261@2|Bacteria,1MVXJ@1224|Proteobacteria,1SYNG@1236|Gammaproteobacteria,1XCJQ@135614|Xanthomonadales 135614|Xanthomonadales S Bacterial lipid A biosynthesis acyltransferase - - - - - - - - - - - - Lip_A_acyltrans SRR25158195_k127_1338183_0 522373.Smlt1347 3.581e-255 799.0 COG4206@1|root,COG4206@2|Bacteria,1R47X@1224|Proteobacteria,1T1X7@1236|Gammaproteobacteria,1X44I@135614|Xanthomonadales 135614|Xanthomonadales H Secretin and TonB N terminus short domain - - - - - - - - - - - - Plug,STN,TonB_dep_Rec SRR25158195_k127_1338183_1 391008.Smal_1133 2.414e-156 509.0 COG3712@1|root,COG3712@2|Bacteria,1MZCK@1224|Proteobacteria,1S9Q3@1236|Gammaproteobacteria,1X6Q9@135614|Xanthomonadales 135614|Xanthomonadales PT Domain of unknown function (DUF4880) - - - ko:K07165 - - - - ko00000 - - - DUF4880,DUF4974,FecR SRR25158195_k127_1338183_2 522373.Smlt1349 5.561e-107 348.0 COG1595@1|root,COG1595@2|Bacteria,1N6SV@1224|Proteobacteria,1S570@1236|Gammaproteobacteria,1X6UZ@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_1341773_1 522373.Smlt0899 2.949e-81 271.0 COG0086@1|root,COG0086@2|Bacteria,1MU3M@1224|Proteobacteria,1RPYH@1236|Gammaproteobacteria,1X3IQ@135614|Xanthomonadales 135614|Xanthomonadales K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoC GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 ko:K03046 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 SRR25158195_k127_1341773_0 522373.Smlt0898 2.642e-291 895.0 COG0085@1|root,COG0085@2|Bacteria,1MUC4@1224|Proteobacteria,1RMK0@1236|Gammaproteobacteria,1X3ME@135614|Xanthomonadales 135614|Xanthomonadales K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoB GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 ko:K03043 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 SRR25158195_k127_1369709_5 1429851.X548_18145 1.892e-52 191.0 COG0113@1|root,COG0113@2|Bacteria,1MWMW@1224|Proteobacteria,1RP6Q@1236|Gammaproteobacteria,1X3RV@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the ALAD family hemB - 4.2.1.24 ko:K01698 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00036 RC00918,RC01781 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ALAD SRR25158195_k127_1369709_2 391008.Smal_3860 5.658e-181 568.0 COG3781@1|root,COG3781@2|Bacteria,1MX91@1224|Proteobacteria,1S0QU@1236|Gammaproteobacteria,1X679@135614|Xanthomonadales 135614|Xanthomonadales S Bestrophin, RFP-TM, chloride channel - - - ko:K08994 - - - - ko00000,ko02000 1.A.46.2 - - Bestrophin SRR25158195_k127_1369709_6 522373.Smlt4499 7.492e-44 161.0 2EIB4@1|root,33C2I@2|Bacteria,1NCTY@1224|Proteobacteria,1T9NM@1236|Gammaproteobacteria,1X8D7@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - - SRR25158195_k127_1369709_4 391008.Smal_3862 5.759e-82 275.0 2ECBH@1|root,3369W@2|Bacteria,1NE1Q@1224|Proteobacteria,1SF6Y@1236|Gammaproteobacteria,1X708@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1369709_0 522373.Smlt4501 0.0 1122.0 COG4805@1|root,COG4805@2|Bacteria,1PIM6@1224|Proteobacteria,1RRW7@1236|Gammaproteobacteria,1X3BX@135614|Xanthomonadales 135614|Xanthomonadales S Bacterial protein of unknown function (DUF885) - - - - - - - - - - - - DUF885 SRR25158195_k127_1369709_3 391008.Smal_3864 4.375e-90 299.0 2DNGI@1|root,32XDP@2|Bacteria 2|Bacteria S Cytochrome oxidase complex assembly protein 1 - - - - - - - - - - - - Coa1 SRR25158195_k127_1369709_1 522373.Smlt4503 1.717e-317 972.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1P6E1@1224|Proteobacteria,1RPRK@1236|Gammaproteobacteria,1X2XM@135614|Xanthomonadales 135614|Xanthomonadales E peptidase - - 3.4.14.5 ko:K01278 ko04974,map04974 - - - ko00000,ko00001,ko01000,ko01002,ko04090,ko04147 - - - DPPIV_N,PD40,Peptidase_S9 SRR25158195_k127_1371370_4 1429851.X548_19680 7.51e-62 214.0 COG0429@1|root,COG0429@2|Bacteria,1MWV1@1224|Proteobacteria,1RN39@1236|Gammaproteobacteria,1X3GG@135614|Xanthomonadales 135614|Xanthomonadales S hydrolase of the alpha beta-hydrolase fold - - - ko:K07019 - - - - ko00000 - - - Abhydrolase_1,Abhydrolase_6,Hydrolase_4 SRR25158195_k127_1371370_1 522373.Smlt0144 7.837e-158 501.0 COG0204@1|root,COG0204@2|Bacteria,1N2DG@1224|Proteobacteria,1S7SZ@1236|Gammaproteobacteria,1X5QD@135614|Xanthomonadales 135614|Xanthomonadales I acetyltransferase plsC1 - 2.3.1.51 ko:K00655 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R02241,R09381 RC00004,RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase SRR25158195_k127_1371370_2 522373.Smlt0143 1.01e-83 279.0 COG2050@1|root,COG2050@2|Bacteria,1RGVP@1224|Proteobacteria,1S5WY@1236|Gammaproteobacteria,1X6JW@135614|Xanthomonadales 135614|Xanthomonadales Q Required for efficient enterobactin production - - - - - - - - - - - - 4HBT SRR25158195_k127_1371370_0 522373.Smlt0142 0.0 1249.0 COG1502@1|root,COG1502@2|Bacteria,1MUDJ@1224|Proteobacteria,1RQM3@1236|Gammaproteobacteria,1X4AK@135614|Xanthomonadales 135614|Xanthomonadales I Cardiolipin synthase - - - - - - - - - - - - PLDc_2 SRR25158195_k127_1371370_3 522373.Smlt0141 2.085e-66 226.0 COG2353@1|root,COG2353@2|Bacteria,1PC7W@1224|Proteobacteria,1SX2I@1236|Gammaproteobacteria,1X72Z@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0312 family - - - - - - - - - - - - YceI SRR25158195_k127_1371632_1 522373.Smlt4245 1.72e-90 303.0 COG1273@1|root,COG1273@2|Bacteria,1MWCU@1224|Proteobacteria,1RYQ0@1236|Gammaproteobacteria,1X70Z@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3426) - - - - - - - - - - - - DUF3426,zinc_ribbon_4 SRR25158195_k127_1371632_0 1429851.X548_17015 2.57e-192 602.0 COG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,1RNAR@1236|Gammaproteobacteria,1X3WM@135614|Xanthomonadales 135614|Xanthomonadales J Methylates ribosomal protein L11 prmA - - ko:K02687 - - - - ko00000,ko01000,ko03009 - - - PrmA SRR25158195_k127_1371632_2 1429851.X548_17010 6.878e-13 70.0 2A4A3@1|root,30SVK@2|Bacteria,1PCCM@1224|Proteobacteria,1SXAU@1236|Gammaproteobacteria,1X61B@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1373998_0 522373.Smlt3623 1.255e-294 906.0 COG0477@1|root,COG2814@2|Bacteria,1MUDA@1224|Proteobacteria,1RP1M@1236|Gammaproteobacteria,1X31Y@135614|Xanthomonadales 135614|Xanthomonadales EGP Major facilitator superfamily emrA - - - - - - - - - - - MFS_1,MFS_3,Sugar_tr SRR25158195_k127_1373998_1 1429851.X548_13835 8.543e-149 473.0 COG0407@1|root,COG0407@2|Bacteria,1MUG1@1224|Proteobacteria,1RMDH@1236|Gammaproteobacteria,1X4NV@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III hemE GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009064,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019353,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0033526,GO:0034641,GO:0042168,GO:0042440,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 4.1.1.37 ko:K01599 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R03197,R04972 RC00872 ko00000,ko00001,ko00002,ko01000 - - - URO-D SRR25158195_k127_1377105_1 522373.Smlt4344 1.683e-114 371.0 COG0702@1|root,COG0702@2|Bacteria,1MZG7@1224|Proteobacteria,1S39N@1236|Gammaproteobacteria,1XBYC@135614|Xanthomonadales 135614|Xanthomonadales GM Nucleoside-diphosphate-sugar epimerases - - - - - - - - - - - - NAD_binding_10 SRR25158195_k127_1377105_0 522373.Smlt4345 3.128e-298 931.0 COG2199@1|root,COG3706@2|Bacteria,1MXAW@1224|Proteobacteria,1S913@1236|Gammaproteobacteria,1X4N3@135614|Xanthomonadales 135614|Xanthomonadales T Diguanylate cyclase - - - - - - - - - - - - GGDEF SRR25158195_k127_1377374_1 522373.Smlt1449 2.015e-231 722.0 COG1524@1|root,COG1524@2|Bacteria,1N5SF@1224|Proteobacteria,1RS7W@1236|Gammaproteobacteria,1X350@135614|Xanthomonadales 135614|Xanthomonadales S proteins of the AP superfamily - - - - - - - - - - - - Phosphodiest SRR25158195_k127_1377374_3 391008.Smal_1218 1.164e-98 325.0 COG0350@1|root,COG0350@2|Bacteria,1N2YQ@1224|Proteobacteria,1S68H@1236|Gammaproteobacteria,1X6DF@135614|Xanthomonadales 135614|Xanthomonadales L Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated ogt - 2.1.1.63 ko:K00567 - - - - ko00000,ko01000,ko03400 - - - Ada_Zn_binding,DNA_binding_1,HTH_18,Methyltransf_1N SRR25158195_k127_1377374_0 522373.Smlt1452 2.457e-309 949.0 COG0122@1|root,COG2169@1|root,COG0122@2|Bacteria,COG2169@2|Bacteria,1QTXM@1224|Proteobacteria,1RNQB@1236|Gammaproteobacteria,1X4AJ@135614|Xanthomonadales 135614|Xanthomonadales K AlkA N-terminal domain Ada - 3.2.2.21 ko:K13529 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03000,ko03400 - - - Ada_Zn_binding,AlkA_N,HTH_18,HhH-GPD SRR25158195_k127_1377374_2 522373.Smlt1454 1.127e-224 699.0 COG3904@1|root,COG3904@2|Bacteria,1NE1T@1224|Proteobacteria,1SIKR@1236|Gammaproteobacteria,1X4SD@135614|Xanthomonadales 135614|Xanthomonadales S periplasmic protein - - - - - - - - - - - - - SRR25158195_k127_1377374_4 1429851.X548_04825 1.538e-85 286.0 COG2197@1|root,COG2197@2|Bacteria,1RHWP@1224|Proteobacteria,1STVR@1236|Gammaproteobacteria,1XD4I@135614|Xanthomonadales 135614|Xanthomonadales KT Protein of unknown function (DUF4019) - - - - - - - - - - - - DUF4019 SRR25158195_k127_1377638_5 1429851.X548_19830 2.395e-16 78.0 COG0240@1|root,COG0240@2|Bacteria,1MUU3@1224|Proteobacteria,1RPQ7@1236|Gammaproteobacteria,1X2XQ@135614|Xanthomonadales 135614|Xanthomonadales I Glycerol-3-phosphate dehydrogenase gpsA - 1.1.1.94 ko:K00057 ko00564,ko01110,map00564,map01110 - R00842,R00844 RC00029 ko00000,ko00001,ko01000 - - - NAD_Gly3P_dh_C,NAD_Gly3P_dh_N SRR25158195_k127_1377638_2 391008.Smal_0137 1.363e-64 226.0 COG4319@1|root,COG4319@2|Bacteria,1QG6G@1224|Proteobacteria,1TDJB@1236|Gammaproteobacteria,1XAW4@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4440) - - - - - - - - - - - - DUF4440 SRR25158195_k127_1377638_0 522373.Smlt0176 4.63e-189 599.0 COG0798@1|root,COG0798@2|Bacteria,1MUXY@1224|Proteobacteria,1RP2I@1236|Gammaproteobacteria,1X49A@135614|Xanthomonadales 135614|Xanthomonadales P COG0798 Arsenite efflux pump ACR3 and related permeases - - - ko:K03325 - - - - ko00000,ko02000 2.A.59 - - SBF SRR25158195_k127_1377638_1 522373.Smlt0177 9.245e-88 296.0 COG0394@1|root,COG0394@2|Bacteria,1RI0X@1224|Proteobacteria,1SYMF@1236|Gammaproteobacteria 1236|Gammaproteobacteria T Low molecular weight phosphotyrosine protein phosphatase - - 1.20.4.1 ko:K03741 - - - - ko00000,ko01000 - - - LMWPc SRR25158195_k127_1377638_3 522373.Smlt0178 5.768e-53 187.0 COG0640@1|root,COG0640@2|Bacteria,1MZAU@1224|Proteobacteria,1S5VQ@1236|Gammaproteobacteria,1X7YG@135614|Xanthomonadales 135614|Xanthomonadales K Helix-turn-helix domain - - - ko:K03892 - - - - ko00000,ko03000 - - - HTH_20 SRR25158195_k127_1386465_0 1429851.X548_19270 0.0 1682.0 COG3401@1|root,COG3401@2|Bacteria,1R4JU@1224|Proteobacteria,1SKUD@1236|Gammaproteobacteria,1X5MH@135614|Xanthomonadales 135614|Xanthomonadales S Concanavalin A-like lectin/glucanases superfamily - - - - - - - - - - - - Laminin_G_3 SRR25158195_k127_1386465_1 1429851.X548_19275 3.207e-106 346.0 COG5553@1|root,COG5553@2|Bacteria,1R5RR@1224|Proteobacteria,1S0Y6@1236|Gammaproteobacteria,1X3J0@135614|Xanthomonadales 135614|Xanthomonadales S Cysteine dioxygenase type I - - - - - - - - - - - - CDO_I SRR25158195_k127_1386465_2 1429851.X548_19280 3.922e-66 226.0 COG2272@1|root,COG2272@2|Bacteria,1MVQZ@1224|Proteobacteria,1RPFW@1236|Gammaproteobacteria,1X4ZQ@135614|Xanthomonadales 135614|Xanthomonadales I Belongs to the type-B carboxylesterase lipase family - - - - - - - - - - - - COesterase SRR25158195_k127_1388850_1 1429851.X548_01330 2.241e-226 710.0 COG2194@1|root,COG2194@2|Bacteria,1MWJY@1224|Proteobacteria,1RN4T@1236|Gammaproteobacteria,1X46Y@135614|Xanthomonadales 135614|Xanthomonadales S Cellulose biosynthesis protein BcsG - - - - - - - - - - - - CBP_BcsG SRR25158195_k127_1388850_0 1429851.X548_01320 1.205e-240 752.0 28JMX@1|root,2Z9EC@2|Bacteria,1R485@1224|Proteobacteria,1RQGD@1236|Gammaproteobacteria,1X8Y1@135614|Xanthomonadales 135614|Xanthomonadales S GGDEF I-site like or GIL domain - - - - - - - - - - - - CBP_GIL SRR25158195_k127_1388850_2 522373.Smlt0709 5.126e-59 205.0 COG3539@1|root,COG3539@2|Bacteria,1R5WQ@1224|Proteobacteria,1S80K@1236|Gammaproteobacteria,1X6AR@135614|Xanthomonadales 135614|Xanthomonadales NU Fimbrial - - - - - - - - - - - - Fimbrial SRR25158195_k127_1389588_8 1429851.X548_08660 3.316e-13 71.0 2AFQE@1|root,315S9@2|Bacteria,1RGMQ@1224|Proteobacteria,1S3XW@1236|Gammaproteobacteria,1XBHV@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1389588_3 391008.Smal_0144 1.843e-125 401.0 COG3637@1|root,COG3637@2|Bacteria,1RK7I@1224|Proteobacteria,1SGD9@1236|Gammaproteobacteria,1X62A@135614|Xanthomonadales 135614|Xanthomonadales M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - - - - - - - - - - OMP_b-brl SRR25158195_k127_1389588_1 391008.Smal_0147 1.464e-205 642.0 COG2837@1|root,COG2837@2|Bacteria,1MWDD@1224|Proteobacteria,1RMWG@1236|Gammaproteobacteria,1X657@135614|Xanthomonadales 135614|Xanthomonadales P Dyp-type peroxidase family - - - ko:K07223 - - - - ko00000 - - - Dyp_perox SRR25158195_k127_1389588_7 391008.Smal_0148 2.713e-57 204.0 2E4EJ@1|root,32Z9S@2|Bacteria,1RGPF@1224|Proteobacteria,1SU1V@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_1389588_4 522373.Smlt0189 1.721e-112 365.0 COG3201@1|root,COG3201@2|Bacteria,1MXN4@1224|Proteobacteria,1RMZE@1236|Gammaproteobacteria,1XCJW@135614|Xanthomonadales 135614|Xanthomonadales H Nicotinamide mononucleotide transporter - - - ko:K03811 - - - - ko00000,ko02000 4.B.1.1 - - NMN_transporter SRR25158195_k127_1389588_0 391008.Smal_0150 0.0 1388.0 COG4773@1|root,COG4773@2|Bacteria,1NZCG@1224|Proteobacteria,1T1NA@1236|Gammaproteobacteria,1X3J2@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1389588_2 391008.Smal_0151 6.977e-200 629.0 COG2334@1|root,COG2334@2|Bacteria,1R4QR@1224|Proteobacteria,1SNU4@1236|Gammaproteobacteria,1XCN0@135614|Xanthomonadales 135614|Xanthomonadales S homoserine kinase type II (Protein kinase fold) - - - - - - - - - - - - APH SRR25158195_k127_1389588_6 1429851.X548_19925 7.391e-58 205.0 2DT4Z@1|root,33IQP@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - Rick_17kDa_Anti SRR25158195_k127_1389588_5 391008.Smal_0155 1.555e-70 239.0 COG2197@1|root,COG2197@2|Bacteria,1MW84@1224|Proteobacteria,1SPA2@1236|Gammaproteobacteria,1XC3T@135614|Xanthomonadales 135614|Xanthomonadales K luxR family - - - ko:K07687 ko02020,ko02026,map02020,map02026 M00474 - - ko00000,ko00001,ko00002,ko02022 - - - GerE,Response_reg SRR25158195_k127_1395691_3 391008.Smal_1507 4.61e-36 136.0 28RNU@1|root,2ZE1H@2|Bacteria,1P6CR@1224|Proteobacteria,1SUXE@1236|Gammaproteobacteria,1X8FD@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1395691_2 522373.Smlt1768 2.061e-132 426.0 COG3619@1|root,COG3619@2|Bacteria,1RB5Q@1224|Proteobacteria,1RRG5@1236|Gammaproteobacteria,1X5CY@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1275) - - - - - - - - - - - - DUF1275 SRR25158195_k127_1395691_1 522373.Smlt1767 1.479e-156 496.0 COG0351@1|root,COG0351@2|Bacteria,1MU9J@1224|Proteobacteria,1RNFP@1236|Gammaproteobacteria,1X38P@135614|Xanthomonadales 135614|Xanthomonadales H Phosphomethylpyrimidine kinase thiD - 2.7.1.49,2.7.4.7 ko:K00941 ko00730,ko01100,map00730,map01100 M00127 R03471,R04509 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Phos_pyr_kin SRR25158195_k127_1395691_0 391008.Smal_1504 1.273e-162 525.0 COG4757@1|root,COG4757@2|Bacteria,1RI0P@1224|Proteobacteria,1SBZV@1236|Gammaproteobacteria,1X4A1@135614|Xanthomonadales 135614|Xanthomonadales S Serine aminopeptidase, S33 - - - - - - - - - - - - Hydrolase_4 SRR25158195_k127_1396014_1 391008.Smal_3782 1.687e-169 535.0 COG0606@1|root,COG0606@2|Bacteria,1MU4R@1224|Proteobacteria,1RMB9@1236|Gammaproteobacteria,1X4KT@135614|Xanthomonadales 135614|Xanthomonadales O Among the AAA ATPases, the YifB protease family belongs to the Helix 2 insert clade - - - ko:K07391 - - - - ko00000 - - - ChlI,Mg_chelatase,Mg_chelatase_C SRR25158195_k127_1396014_0 366649.XFF4834R_chr02650 0.0 1177.0 COG1629@1|root,COG4771@2|Bacteria,1MW4X@1224|Proteobacteria,1RPVY@1236|Gammaproteobacteria,1X3CF@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor for ferrienterochelin and colicins - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec SRR25158195_k127_1397929_1 522373.Smlt3457 1.755e-219 683.0 COG0665@1|root,COG0665@2|Bacteria,1MVIZ@1224|Proteobacteria,1RQ50@1236|Gammaproteobacteria,1X3PM@135614|Xanthomonadales 135614|Xanthomonadales E acid dehydrogenase - - 1.4.5.1 ko:K00285 ko00360,map00360 - R01374,R09493 RC00006,RC00025 ko00000,ko00001,ko01000 - - - DAO SRR25158195_k127_1397929_0 522373.Smlt3458 7.151e-227 708.0 COG2311@1|root,COG2311@2|Bacteria,1MWHW@1224|Proteobacteria,1RQ08@1236|Gammaproteobacteria,1X54V@135614|Xanthomonadales 135614|Xanthomonadales S membrane yxaH - - ko:K07148 - - - - ko00000 - - - DUF418 SRR25158195_k127_1397929_4 522373.Smlt3459 2.457e-96 321.0 COG1047@1|root,COG1047@2|Bacteria,1RGXG@1224|Proteobacteria,1S6XS@1236|Gammaproteobacteria,1X53U@135614|Xanthomonadales 135614|Xanthomonadales O peptidyl-prolyl cis-trans isomerase - - 5.2.1.8 ko:K03775 - - - - ko00000,ko01000,ko03110 - - - FKBP_C SRR25158195_k127_1397929_3 522373.Smlt3460 3.145e-104 360.0 COG0791@1|root,COG0791@2|Bacteria,1N0EE@1224|Proteobacteria,1RP3P@1236|Gammaproteobacteria,1X6SM@135614|Xanthomonadales 135614|Xanthomonadales M COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - - - - - - - - - - - - NLPC_P60 SRR25158195_k127_1397929_2 1429851.X548_13030 6.999e-139 445.0 COG0791@1|root,COG0791@2|Bacteria,1N0EE@1224|Proteobacteria,1RP3P@1236|Gammaproteobacteria,1X5ZK@135614|Xanthomonadales 135614|Xanthomonadales M NlpC/P60 family - - - - - - - - - - - - NLPC_P60 SRR25158195_k127_1402862_0 522373.Smlt3863 1.351e-182 573.0 COG0006@1|root,COG0006@2|Bacteria,1MUZS@1224|Proteobacteria,1RN0W@1236|Gammaproteobacteria,1X34E@135614|Xanthomonadales 135614|Xanthomonadales E aminopeptidase pepP - 3.4.11.9 ko:K01262 - - - - ko00000,ko01000,ko01002 - - - AMP_N,Peptidase_M24 SRR25158195_k127_1402862_4 522373.Smlt3864 3.31e-100 335.0 COG3079@1|root,COG3079@2|Bacteria,1N7W0@1224|Proteobacteria,1SCPW@1236|Gammaproteobacteria,1X773@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0149 family - - - ko:K09895 - - - - ko00000 - - - UPF0149 SRR25158195_k127_1402862_8 391008.Smal_3279 1.276e-34 134.0 2C0ET@1|root,33A9M@2|Bacteria,1NGE5@1224|Proteobacteria,1SGID@1236|Gammaproteobacteria,1X83G@135614|Xanthomonadales 135614|Xanthomonadales S TIGRFAM TIGR02449 family protein VL23_04670 - - ko:K09892 - - - - ko00000,ko03036 - - - ZapB SRR25158195_k127_1402862_7 391008.Smal_3280 2.219e-49 179.0 COG3027@1|root,COG3027@2|Bacteria,1N6YN@1224|Proteobacteria,1SCBI@1236|Gammaproteobacteria,1X7MC@135614|Xanthomonadales 135614|Xanthomonadales D Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division - - - ko:K09888 - - - - ko00000,ko03036 - - - ZapA SRR25158195_k127_1402862_3 391008.Smal_3281 1.35e-119 387.0 COG0212@1|root,COG0212@2|Bacteria,1MZG0@1224|Proteobacteria,1S612@1236|Gammaproteobacteria,1X69I@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - 6.3.3.2 ko:K01934 ko00670,ko01100,map00670,map01100 - R02301 RC00183 ko00000,ko00001,ko01000 - - - 5-FTHF_cyc-lig SRR25158195_k127_1402862_5 391008.Smal_3282 1.276e-98 325.0 COG2947@1|root,COG2947@2|Bacteria,1RHRU@1224|Proteobacteria,1S68X@1236|Gammaproteobacteria,1X5XQ@135614|Xanthomonadales 135614|Xanthomonadales S EVE domain-containing protein - - - - - - - - - - - - EVE SRR25158195_k127_1402862_2 1429851.X548_15060 1.127e-135 433.0 COG0120@1|root,COG0120@2|Bacteria,1MVGR@1224|Proteobacteria,1RNF8@1236|Gammaproteobacteria,1X403@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate rpiA GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 5.3.1.6 ko:K01807 ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167,M00580 R01056 RC00434 ko00000,ko00001,ko00002,ko01000 - - - Rib_5-P_isom_A SRR25158195_k127_1402862_6 391008.Smal_3284 2.655e-87 301.0 COG1430@1|root,COG1430@2|Bacteria,1MZBJ@1224|Proteobacteria,1S7AR@1236|Gammaproteobacteria,1XC4W@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized ACR, COG1430 - - - ko:K09005 - - - - ko00000 - - - DUF192 SRR25158195_k127_1402862_1 522373.Smlt3870 5.788e-181 569.0 COG2912@1|root,COG2912@2|Bacteria,1MVJQ@1224|Proteobacteria,1RQ7V@1236|Gammaproteobacteria,1X44X@135614|Xanthomonadales 135614|Xanthomonadales S Transglutaminase-like superfamily - - - - - - - - - - - - TPR_9,Transglut_core2 SRR25158195_k127_1406295_0 391008.Smal_2993 3.43e-181 569.0 COG1807@1|root,COG1807@2|Bacteria,1MXH5@1224|Proteobacteria,1RSQE@1236|Gammaproteobacteria,1X589@135614|Xanthomonadales 135614|Xanthomonadales M Dolichyl-phosphate-mannose-protein mannosyltransferase - - - - - - - - - - - - Glyco_transf_22,PMT_2 SRR25158195_k127_1406295_2 522373.Smlt3570 7.805e-130 418.0 COG3907@1|root,COG3907@2|Bacteria,1MU4M@1224|Proteobacteria,1S5Z3@1236|Gammaproteobacteria,1X659@135614|Xanthomonadales 135614|Xanthomonadales S PAP2 superfamily - - - - - - - - - - - - PAP2 SRR25158195_k127_1406295_1 522373.Smlt3571 1.246e-164 521.0 COG2194@1|root,COG2194@2|Bacteria,1MWS7@1224|Proteobacteria,1RMNG@1236|Gammaproteobacteria,1X3D7@135614|Xanthomonadales 135614|Xanthomonadales S membrane yjdB - 2.7.8.43 ko:K03760 ko01503,map01503 M00722 R11555,R11556,R11557 RC00002 ko00000,ko00001,ko00002,ko01000,ko01005 - - - DUF1705,Sulfatase SRR25158195_k127_1412268_3 1429851.X548_09385 6.159e-16 78.0 COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,1RN4H@1236|Gammaproteobacteria,1X3WA@135614|Xanthomonadales 135614|Xanthomonadales L exodeoxyribonuclease iii xthA2 - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos SRR25158195_k127_1412268_0 391008.Smal_2127 1.223e-212 664.0 COG3214@1|root,COG3214@2|Bacteria,1N40B@1224|Proteobacteria,1SK9N@1236|Gammaproteobacteria,1XBYZ@135614|Xanthomonadales 135614|Xanthomonadales S Winged helix DNA-binding domain - - - ko:K09927 - - - - ko00000 - - - HTH_42 SRR25158195_k127_1412268_1 1429851.X548_09435 9.639e-189 592.0 COG0596@1|root,COG0596@2|Bacteria,1MWW8@1224|Proteobacteria,1RMKF@1236|Gammaproteobacteria,1X4QJ@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the peptidase S33 family - - 3.4.11.5 ko:K01259 ko00330,map00330 - R00135 - ko00000,ko00001,ko01000,ko01002 - - - Abhydrolase_1 SRR25158195_k127_1412268_2 84531.JMTZ01000086_gene1362 1.615e-161 517.0 COG5002@1|root,COG5002@2|Bacteria,1QTV1@1224|Proteobacteria,1T1I6@1236|Gammaproteobacteria,1X5MG@135614|Xanthomonadales 135614|Xanthomonadales T HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - 2.7.13.3 ko:K07644 ko02020,map02020 M00452,M00745 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko01504,ko02022 - - - HATPase_c,HisKA SRR25158195_k127_1412810_2 522373.Smlt3675 2.831e-168 531.0 COG0189@1|root,COG0189@2|Bacteria,1MVUA@1224|Proteobacteria,1RMU0@1236|Gammaproteobacteria,1X3UD@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the prokaryotic GSH synthase family gshB GO:0003674,GO:0003824,GO:0004363,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0019184,GO:0034641,GO:0042398,GO:0043043,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044424,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901564,GO:1901566,GO:1901576 6.3.2.3 ko:K01920 ko00270,ko00480,ko01100,map00270,map00480,map01100 M00118 R00497,R10994 RC00096,RC00141 ko00000,ko00001,ko00002,ko01000 - - - GSH-S_ATP,GSH-S_N SRR25158195_k127_1412810_4 522373.Smlt3674 3.976e-80 267.0 COG0745@1|root,COG0745@2|Bacteria,1RDYB@1224|Proteobacteria,1S4CZ@1236|Gammaproteobacteria,1X6HP@135614|Xanthomonadales 135614|Xanthomonadales KT response regulator pilG - - ko:K02657 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko02022,ko02035,ko02044 - - - Response_reg SRR25158195_k127_1412810_5 522373.Smlt3673 2.787e-70 238.0 COG0745@1|root,COG0745@2|Bacteria,1N6AI@1224|Proteobacteria,1SBV3@1236|Gammaproteobacteria,1X711@135614|Xanthomonadales 135614|Xanthomonadales T response VL23_02765 - - ko:K02658 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko02022,ko02035,ko02044 - - - Response_reg SRR25158195_k127_1412810_3 1429851.X548_14110 1.534e-107 349.0 COG0835@1|root,COG0835@2|Bacteria,1RCIR@1224|Proteobacteria,1S61F@1236|Gammaproteobacteria,1X5IW@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis signal transduction protein pilI - - ko:K02659 ko02020,ko02025,map02020,map02025 - - - ko00000,ko00001,ko02035,ko02044 - - - CheW SRR25158195_k127_1412810_0 522373.Smlt3671 0.0 1197.0 COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X5CR@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein pilJ - - ko:K02660 ko02020,ko02025,map02020,map02025 - - - ko00000,ko00001,ko02035,ko02044 - - - MCPsignal,PilJ SRR25158195_k127_1412810_1 391008.Smal_3085 1.699e-310 967.0 COG0643@1|root,COG0784@1|root,COG2198@1|root,COG0643@2|Bacteria,COG0784@2|Bacteria,COG2198@2|Bacteria,1MUAG@1224|Proteobacteria,1RMS6@1236|Gammaproteobacteria,1X3AY@135614|Xanthomonadales 135614|Xanthomonadales T Chemotaxis protein histidine kinase and related kinases pilL - - ko:K02487,ko:K06596 ko02020,ko02025,map02020,map02025 M00507 - - ko00000,ko00001,ko00002,ko01001,ko02022,ko02035 - - - CheW,H-kinase_dim,HATPase_c,Hpt,Response_reg SRR25158195_k127_1413618_7 522373.Smlt0354 1.468e-71 250.0 COG1413@1|root,COG1413@2|Bacteria 2|Bacteria C deoxyhypusine monooxygenase activity - - - - - - - - - - - - HEAT_2 SRR25158195_k127_1413618_6 522373.Smlt0353 6.564e-123 401.0 COG0446@1|root,COG0446@2|Bacteria,1RET8@1224|Proteobacteria,1SHY7@1236|Gammaproteobacteria,1XBWM@135614|Xanthomonadales 135614|Xanthomonadales S pyridine nucleotide-disulphide oxidoreductase - - - - - - - - - - - - - SRR25158195_k127_1413618_10 1223543.GP2_003_00350 1.973e-43 168.0 COG4152@1|root,COG4152@2|Bacteria,2I2DK@201174|Actinobacteria,4GBK6@85026|Gordoniaceae 201174|Actinobacteria S Domain of unknown function (DUF4162) - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran,DUF4162 SRR25158195_k127_1413618_5 522373.Smlt0351 4.998e-124 409.0 COG1668@1|root,COG1668@2|Bacteria,1R8GE@1224|Proteobacteria,1RZ8C@1236|Gammaproteobacteria,1XAHK@135614|Xanthomonadales 135614|Xanthomonadales CP ABC-type Na efflux pump, permease component - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - - SRR25158195_k127_1413618_1 1429851.X548_20555 4.415e-280 867.0 COG0477@1|root,COG0477@2|Bacteria,1MVZG@1224|Proteobacteria,1RS8V@1236|Gammaproteobacteria,1X423@135614|Xanthomonadales 135614|Xanthomonadales EGP Major facilitator superfamily kgtP - - ko:K03761 - - - - ko00000,ko02000 2.A.1.6.2 - - Sugar_tr SRR25158195_k127_1413618_0 522373.Smlt0348 0.0 1100.0 COG2234@1|root,COG2234@2|Bacteria,1MV86@1224|Proteobacteria,1RNNQ@1236|Gammaproteobacteria,1X4D8@135614|Xanthomonadales 135614|Xanthomonadales S aminopeptidase - - - - - - - - - - - - PA,Peptidase_M28 SRR25158195_k127_1413618_3 522373.Smlt0347 1.04e-191 601.0 COG0491@1|root,COG0491@2|Bacteria,1MXKX@1224|Proteobacteria,1RR31@1236|Gammaproteobacteria,1X47R@135614|Xanthomonadales 135614|Xanthomonadales S Zn-dependent hydrolases including glyoxylases - - - - - - - - - - - - Lactamase_B SRR25158195_k127_1413618_9 391008.Smal_0243 7.008e-47 171.0 2A0HV@1|root,30NN1@2|Bacteria,1QBAV@1224|Proteobacteria,1T6VC@1236|Gammaproteobacteria,1X88C@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1413618_2 522373.Smlt0345 9.571e-267 823.0 COG0180@1|root,COG3422@1|root,COG0180@2|Bacteria,COG3422@2|Bacteria,1MV4T@1224|Proteobacteria,1RNDC@1236|Gammaproteobacteria,1X3GF@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA trpS - 6.1.1.2 ko:K01867 ko00970,map00970 M00359,M00360 R03664 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DUF1508,tRNA-synt_1b SRR25158195_k127_1413618_4 1429851.X548_20525 4.5e-131 445.0 28T75@1|root,2ZFFV@2|Bacteria,1RBYB@1224|Proteobacteria,1S6Z2@1236|Gammaproteobacteria,1XCYV@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1413618_12 391008.Smal_0240 1.039e-40 151.0 COG3237@1|root,COG3237@2|Bacteria,1N6X4@1224|Proteobacteria,1SDHP@1236|Gammaproteobacteria,1X8CX@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0337 (CsbD) family - - - - - - - - - - - - CsbD SRR25158195_k127_1413618_13 1429851.X548_20515 1.643e-18 85.0 COG5510@1|root,COG5510@2|Bacteria,1QE7S@1224|Proteobacteria,1TAQG@1236|Gammaproteobacteria,1X8WV@135614|Xanthomonadales 135614|Xanthomonadales S Entericidin - - - - - - - - - - - - Entericidin SRR25158195_k127_1413618_8 59538.XP_005979243.1 9.316e-64 218.0 COG0010@1|root,KOG2965@2759|Eukaryota,38CCH@33154|Opisthokonta,3BCCT@33208|Metazoa,3CTT1@33213|Bilateria,47Z9R@7711|Chordata,48YUR@7742|Vertebrata,3J3PU@40674|Mammalia,4IWNC@91561|Cetartiodactyla 33208|Metazoa E Arginase family - - 3.5.3.1 ko:K01476 ko00220,ko00330,ko01100,ko01110,ko01130,ko01230,ko05146,map00220,map00330,map01100,map01110,map01130,map01230,map05146 M00029,M00134 R00551 RC00024,RC00329 ko00000,ko00001,ko00002,ko01000 - - - Arginase SRR25158195_k127_1420512_1 1384056.N787_06230 1.369e-36 142.0 COG3203@1|root,COG3203@2|Bacteria,1MXEB@1224|Proteobacteria,1RPY8@1236|Gammaproteobacteria,1X47V@135614|Xanthomonadales 135614|Xanthomonadales M Protein of unknown function (DUF1302) - - - - - - - - - - - - DUF1302 SRR25158195_k127_1420512_0 1121013.P873_03715 6.149e-195 617.0 28H52@1|root,2Z7HQ@2|Bacteria,1MXTF@1224|Proteobacteria,1RN8H@1236|Gammaproteobacteria,1X4IZ@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1329) - - - - - - - - - - - - DUF1329 SRR25158195_k127_1425410_1 391008.Smal_0121 2.485e-94 310.0 COG4774@1|root,COG4774@2|Bacteria,1QTZK@1224|Proteobacteria,1T2XI@1236|Gammaproteobacteria,1X9YR@135614|Xanthomonadales 135614|Xanthomonadales M TonB-dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1425410_0 391008.Smal_0122 3.856e-215 679.0 COG3852@1|root,COG3852@2|Bacteria,1MVN6@1224|Proteobacteria,1RN15@1236|Gammaproteobacteria,1X3AZ@135614|Xanthomonadales 135614|Xanthomonadales T Signal transduction histidine kinase, nitrogen specific ntrB - 2.7.13.3 ko:K07708 ko02020,map02020 M00497 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA,PAS,PAS_4 SRR25158195_k127_1425410_2 1118235.CAJH01000038_gene2390 2.444e-63 222.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,1RMCK@1236|Gammaproteobacteria,1X3NB@135614|Xanthomonadales 135614|Xanthomonadales T Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains ntrC - - ko:K07712 ko02020,map02020 M00497 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat SRR25158195_k127_1425418_0 391008.Smal_0907 5.266e-113 368.0 COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,1S1IP@1236|Gammaproteobacteria,1XCG9@135614|Xanthomonadales 135614|Xanthomonadales M TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1425418_2 522373.Smlt1066 2.606e-58 205.0 2ATIA@1|root,31J24@2|Bacteria,1QGS8@1224|Proteobacteria,1TE7M@1236|Gammaproteobacteria,1XBFG@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - DUF2946 SRR25158195_k127_1425418_1 522373.Smlt1038 1.94e-72 247.0 COG1942@1|root,COG1942@2|Bacteria,1RHA5@1224|Proteobacteria,1SAGP@1236|Gammaproteobacteria,1X80X@135614|Xanthomonadales 135614|Xanthomonadales S 4-oxalocrotonate tautomerase - - - - - - - - - - - - Tautomerase_2 SRR25158195_k127_1425418_5 360094.PXO_03514 1.788e-30 125.0 COG4104@1|root,COG4104@2|Bacteria,1N6T7@1224|Proteobacteria,1SDI3@1236|Gammaproteobacteria 1236|Gammaproteobacteria S PAAR motif - - - - - - - - - - - - PAAR_motif SRR25158195_k127_1425418_4 360094.PXO_03515 3.73e-36 148.0 2EQWJ@1|root,33IGC@2|Bacteria,1NGVW@1224|Proteobacteria 1224|Proteobacteria S Domain of unknown function (DUF4123) - - - - - - - - - - - - DUF4123 SRR25158195_k127_1432734_0 391008.Smal_1728 3.292e-225 698.0 COG1012@1|root,COG1012@2|Bacteria,1MW72@1224|Proteobacteria,1RY9G@1236|Gammaproteobacteria,1X3B2@135614|Xanthomonadales 135614|Xanthomonadales C belongs to the aldehyde dehydrogenase family - - 1.2.1.3 ko:K00128 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130 M00135 R00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146 RC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh SRR25158195_k127_1432734_4 391008.Smal_1727 4.041e-138 449.0 COG1028@1|root,COG1028@2|Bacteria,1MW46@1224|Proteobacteria,1S4NN@1236|Gammaproteobacteria,1XCB8@135614|Xanthomonadales 135614|Xanthomonadales IQ short chain dehydrogenase - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 SRR25158195_k127_1432734_5 522373.Smlt2130 1.258e-46 170.0 2EGCD@1|root,33A46@2|Bacteria,1NMIX@1224|Proteobacteria,1SIUN@1236|Gammaproteobacteria,1X8EM@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4190) - - - - - - - - - - - - DUF4190 SRR25158195_k127_1432734_3 1429851.X548_07490 2.553e-147 470.0 COG0500@1|root,COG0500@2|Bacteria,1QWHM@1224|Proteobacteria,1T47V@1236|Gammaproteobacteria,1XCTD@135614|Xanthomonadales 135614|Xanthomonadales Q Methyltransferase - - - - - - - - - - - - Methyltransf_11 SRR25158195_k127_1432734_1 522373.Smlt2128 3.201e-218 679.0 COG0167@1|root,COG0167@2|Bacteria,1MU7C@1224|Proteobacteria,1RMCP@1236|Gammaproteobacteria,1X33F@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor pyrD - 1.3.5.2 ko:K00254 ko00240,ko01100,map00240,map01100 M00051 R01868 RC00051 ko00000,ko00001,ko00002,ko01000 - - - DHO_dh SRR25158195_k127_1432734_2 391008.Smal_1723 4.319e-151 486.0 COG0812@1|root,COG0812@2|Bacteria,1MXDH@1224|Proteobacteria,1RNXK@1236|Gammaproteobacteria,1X3P6@135614|Xanthomonadales 135614|Xanthomonadales M Cell wall formation murB - 1.3.1.98 ko:K00075 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R03191,R03192 RC02639 ko00000,ko00001,ko01000,ko01011 - - - FAD_binding_4,MurB_C SRR25158195_k127_143485_0 1205753.A989_09693 8.935e-193 611.0 COG1404@1|root,COG1404@2|Bacteria,1RDT6@1224|Proteobacteria,1S3CA@1236|Gammaproteobacteria,1XCA2@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the peptidase S8 family - - - - - - - - - - - - PPC,Peptidase_S8 SRR25158195_k127_143485_1 1118235.CAJH01000020_gene1222 1.728e-119 399.0 COG5001@1|root,COG5001@2|Bacteria,1QU1Y@1224|Proteobacteria,1T1MI@1236|Gammaproteobacteria,1X5RW@135614|Xanthomonadales 135614|Xanthomonadales T Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - - - - - - - - - - EAL,GAF,GGDEF SRR25158195_k127_143485_3 1429851.X548_07280 2.484e-26 119.0 COG0835@1|root,COG0835@2|Bacteria 2|Bacteria NT chemotaxis cheW - - ko:K02659,ko:K03408,ko:K03415,ko:K11524 ko02020,ko02025,ko02030,map02020,map02025,map02030 M00506 - - ko00000,ko00001,ko00002,ko02022,ko02035,ko02044 - - - CheW SRR25158195_k127_143485_2 1442599.JAAN01000005_gene881 8.888e-73 252.0 COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,1RN05@1236|Gammaproteobacteria,1X39C@135614|Xanthomonadales 135614|Xanthomonadales S Peptidase M16 - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C SRR25158195_k127_1438462_1 391008.Smal_1790 3.211e-248 770.0 COG3228@1|root,COG3228@2|Bacteria,1R9QQ@1224|Proteobacteria,1SKRJ@1236|Gammaproteobacteria,1X4NI@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4105) - - - - - - - - - - - - DUF4105 SRR25158195_k127_1438462_4 1007104.SUS17_595 2.793e-64 235.0 COG0642@1|root,COG2205@2|Bacteria,1PM9S@1224|Proteobacteria,2VF76@28211|Alphaproteobacteria,2K4B5@204457|Sphingomonadales 204457|Sphingomonadales T HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - 2.7.13.3 ko:K18143 ko01501,map01501 M00649,M00655 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko01504,ko02022 - - - HAMP,HATPase_c,HisKA SRR25158195_k127_1438462_3 522373.Smlt2200 8.783e-154 487.0 COG0745@1|root,COG0745@2|Bacteria,1MVQT@1224|Proteobacteria,1RNSY@1236|Gammaproteobacteria,1X9US@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulatory protein, C terminal - - - ko:K18144 ko01501,map01501 M00649,M00655 - - ko00000,ko00001,ko00002,ko01504,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_1438462_2 391008.Smal_1793 3.246e-200 630.0 COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,1RPI1@1236|Gammaproteobacteria,1X3FF@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K18145,ko:K18295 ko01501,map01501 M00639,M00649 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2.40,8.A.1 - - HlyD_D23 SRR25158195_k127_1438462_0 522373.Smlt2202 0.0 1011.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X9F0@135614|Xanthomonadales 135614|Xanthomonadales V MMPL family - - - ko:K18146,ko:K18296 ko01501,map01501 M00639,M00649 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2.15,2.A.6.2.40 - - ACR_tran SRR25158195_k127_144689_2 391008.Smal_4007 6.135e-88 292.0 COG1846@1|root,COG1846@2|Bacteria,1N19E@1224|Proteobacteria,1SECU@1236|Gammaproteobacteria,1X7K2@135614|Xanthomonadales 135614|Xanthomonadales K MarR family transcriptional regulator slyA - - ko:K06075 - - - - ko00000,ko03000 - - - MarR,MarR_2 SRR25158195_k127_144689_1 391008.Smal_4009 4.911e-166 528.0 COG1566@1|root,COG1566@2|Bacteria,1MWG0@1224|Proteobacteria,1RRE3@1236|Gammaproteobacteria,1XCNS@135614|Xanthomonadales 135614|Xanthomonadales V Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - - - - - - - - - - Biotin_lipoyl_2,HlyD_3 SRR25158195_k127_144689_0 522373.Smlt4663 6.224e-280 864.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,1S0PB@1236|Gammaproteobacteria,1X575@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane efflux protein nodT - - - - - - - - - - - OEP SRR25158195_k127_1450081_0 391008.Smal_3695 4.903e-180 565.0 COG0204@1|root,COG0477@1|root,COG0204@2|Bacteria,COG2814@2|Bacteria,1MWDY@1224|Proteobacteria,1RRXF@1236|Gammaproteobacteria,1X3Z7@135614|Xanthomonadales 135614|Xanthomonadales I Acyltransferase aas - - - - - - - - - - - Acyltransferase,MFS_1 SRR25158195_k127_1450081_3 391008.Smal_3696 4.841e-49 177.0 COG4640@1|root,COG4640@2|Bacteria,1QCX4@1224|Proteobacteria,1T8R1@1236|Gammaproteobacteria,1XB3W@135614|Xanthomonadales 135614|Xanthomonadales S Interferon-induced transmembrane protein - - - - - - - - - - - - CD225,DUF4339 SRR25158195_k127_1450081_4 391008.Smal_3697 6.801e-45 163.0 COG4640@1|root,COG4640@2|Bacteria,1P7UN@1224|Proteobacteria,1TBJT@1236|Gammaproteobacteria,1X8N5@135614|Xanthomonadales 135614|Xanthomonadales S Interferon-induced transmembrane protein - - - - - - - - - - - - CD225 SRR25158195_k127_1450081_2 522373.Smlt4287 4.018e-76 257.0 2E37T@1|root,32Y7G@2|Bacteria,1NKGS@1224|Proteobacteria,1T65R@1236|Gammaproteobacteria,1X8HF@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2752) - - - - - - - - - - - - DUF2752 SRR25158195_k127_1450081_1 391008.Smal_3699 9.086e-179 561.0 COG3725@1|root,COG3725@2|Bacteria,1MYFA@1224|Proteobacteria,1SE2J@1236|Gammaproteobacteria,1X4YH@135614|Xanthomonadales 135614|Xanthomonadales V Membrane protein required for beta-lactamase induction ampE - - ko:K03807 - - - - ko00000 - - - CobD_Cbib SRR25158195_k127_1450081_5 391008.Smal_3700 2.65e-18 83.0 COG2816@1|root,COG2816@2|Bacteria,1QGCX@1224|Proteobacteria,1RP0Y@1236|Gammaproteobacteria,1X4JM@135614|Xanthomonadales 135614|Xanthomonadales L nadh pyrophosphatase nudC - 3.6.1.22 ko:K03426 ko00760,ko01100,ko04146,map00760,map01100,map04146 - R00103,R03004,R11104 RC00002 ko00000,ko00001,ko01000 - - - NUDIX,NUDIX-like,zf-NADH-PPase SRR25158195_k127_1451540_1 1118235.CAJH01000019_gene1044 1.968e-123 398.0 COG1472@1|root,COG1472@2|Bacteria,1MVIV@1224|Proteobacteria,1RMA0@1236|Gammaproteobacteria,1X38M@135614|Xanthomonadales 135614|Xanthomonadales G COG1472 Beta-glucosidase-related glycosidases - - - - - - - - - - - - Glyco_hydro_3,Glyco_hydro_3_C SRR25158195_k127_1451540_0 391008.Smal_3676 0.0 1040.0 COG1158@1|root,COG1158@2|Bacteria,1MUCF@1224|Proteobacteria,1RP95@1236|Gammaproteobacteria,1X3B9@135614|Xanthomonadales 135614|Xanthomonadales K Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template rho - - ko:K03628 ko03018,map03018 - - - ko00000,ko00001,ko03019,ko03021 - - - ATP-synt_ab,Rho_N,Rho_RNA_bind SRR25158195_k127_1451540_2 1429851.X548_17105 4.416e-65 225.0 COG3118@1|root,COG3118@2|Bacteria,1MZBB@1224|Proteobacteria,1S5WR@1236|Gammaproteobacteria,1X6WB@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the thioredoxin family trxA - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin SRR25158195_k127_1454654_0 522373.Smlt0857 3.831e-281 873.0 COG1282@1|root,COG1282@2|Bacteria,1MUP4@1224|Proteobacteria,1RMR4@1236|Gammaproteobacteria,1X32D@135614|Xanthomonadales 135614|Xanthomonadales C The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane pntB - 1.6.1.2 ko:K00325 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - PNTB SRR25158195_k127_1454654_1 1384054.N790_11895 5.494e-49 176.0 COG3288@1|root,COG3288@2|Bacteria,1N0TD@1224|Proteobacteria,1SYB5@1236|Gammaproteobacteria,1X7MI@135614|Xanthomonadales 135614|Xanthomonadales C NADP transhydrogenase - - 1.6.1.2 ko:K00324 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - PNTB_4TM SRR25158195_k127_1456875_0 1429851.X548_13945 0.0 1266.0 COG1629@1|root,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1X3YY@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1456875_3 1429851.X548_13950 5.325e-122 394.0 COG1309@1|root,COG1309@2|Bacteria,1RCPQ@1224|Proteobacteria,1S1YN@1236|Gammaproteobacteria,1X3K6@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - - - - - - - - - - TetR_N SRR25158195_k127_1456875_2 522373.Smlt3647 2.295e-194 609.0 COG2267@1|root,COG2267@2|Bacteria,1MUFB@1224|Proteobacteria,1RYM9@1236|Gammaproteobacteria,1X49N@135614|Xanthomonadales 135614|Xanthomonadales I Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6,Hydrolase_4 SRR25158195_k127_1456875_1 391008.Smal_3064 1.834e-197 619.0 COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,1RPM5@1236|Gammaproteobacteria,1X333@135614|Xanthomonadales 135614|Xanthomonadales I converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA fadE - - ko:K06445 ko00071,ko01100,ko01212,map00071,map01100,map01212 M00087 R01175,R01279,R03777,R03857,R03990,R04751,R04754 RC00052,RC00076 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_N,DUF1974 SRR25158195_k127_1457747_9 391008.Smal_2726 9.967e-83 277.0 COG0548@1|root,COG0548@2|Bacteria,1MU17@1224|Proteobacteria,1RNKK@1236|Gammaproteobacteria,1X32I@135614|Xanthomonadales 135614|Xanthomonadales E Acetylglutamate kinase argB GO:0003674,GO:0003824,GO:0004042,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016597,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.7.2.8 ko:K22478 ko00220,ko01210,ko01230,map00220,map01210,map01230 M00028,M00845 R00259,R02649 RC00002,RC00004,RC00043,RC00064 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,NAT SRR25158195_k127_1457747_5 391008.Smal_2727 2.721e-221 687.0 COG0624@1|root,COG0624@2|Bacteria,1MVBR@1224|Proteobacteria,1RNDG@1236|Gammaproteobacteria,1X48W@135614|Xanthomonadales 135614|Xanthomonadales E Acetylornithine deacetylase argE - 3.5.1.16 ko:K01438 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028,M00845 R00669,R09107 RC00064,RC00300 ko00000,ko00001,ko00002,ko01000 - - - M20_dimer,Peptidase_M20 SRR25158195_k127_1457747_1 522373.Smlt3301 5.773e-264 814.0 COG0137@1|root,COG0137@2|Bacteria,1MV0Y@1224|Proteobacteria,1RMEC@1236|Gammaproteobacteria,1X4MV@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the argininosuccinate synthase family. Type 1 subfamily argG GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 ko:K01940 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418 M00029,M00844,M00845 R01954 RC00380,RC00629 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Arginosuc_synth SRR25158195_k127_1457747_4 391008.Smal_2729 6.129e-223 694.0 COG0078@1|root,COG0078@2|Bacteria,1MUFM@1224|Proteobacteria,1S7AW@1236|Gammaproteobacteria,1X35E@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the ATCase OTCase family argF GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 ko:K09065 ko00220,ko01100,ko01230,map00220,map01100,map01230 M00845 R07245 RC00096 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N SRR25158195_k127_1457747_7 522373.Smlt3304 3.94e-107 353.0 COG3134@1|root,COG3134@2|Bacteria,1PCUC@1224|Proteobacteria,1SXYK@1236|Gammaproteobacteria,1X70S@135614|Xanthomonadales 135614|Xanthomonadales S Outer membrane lipoprotein - - - - - - - - - - - - - SRR25158195_k127_1457747_0 522373.Smlt3305 9.228e-294 904.0 COG0215@1|root,COG0215@2|Bacteria,1MV8H@1224|Proteobacteria,1RP5K@1236|Gammaproteobacteria,1X2ZK@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the class-I aminoacyl-tRNA synthetase family cysS - 6.1.1.16 ko:K01883 ko00970,map00970 M00359,M00360 R03650 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DALR_2,tRNA-synt_1e SRR25158195_k127_1457747_8 522373.Smlt3306 4.597e-88 293.0 COG2166@1|root,COG2166@2|Bacteria,1RI8F@1224|Proteobacteria,1S65C@1236|Gammaproteobacteria,1X5ZQ@135614|Xanthomonadales 135614|Xanthomonadales S Fe-S cluster assembly protein SufE sufE - - ko:K02426 - - - - ko00000 - - - SufE SRR25158195_k127_1457747_2 522373.Smlt3307 3.607e-245 763.0 COG0477@1|root,COG2814@2|Bacteria,1QTX0@1224|Proteobacteria,1T1M9@1236|Gammaproteobacteria,1X5J6@135614|Xanthomonadales 135614|Xanthomonadales EGP major facilitator superfamily - - - - - - - - - - - - MFS_1,MFS_3 SRR25158195_k127_1457747_6 391008.Smal_2734 9.412e-185 585.0 COG1734@1|root,COG1734@2|Bacteria,1RD08@1224|Proteobacteria,1S6VE@1236|Gammaproteobacteria,1X5JD@135614|Xanthomonadales 135614|Xanthomonadales T Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression dksA - - ko:K06204 ko02026,map02026 - - - ko00000,ko00001,ko03000,ko03009,ko03021 - - - zf-dskA_traR SRR25158195_k127_1457747_10 391008.Smal_2735 1.137e-46 168.0 COG0759@1|root,COG0759@2|Bacteria,1N6U4@1224|Proteobacteria,1SCG6@1236|Gammaproteobacteria,1X7XD@135614|Xanthomonadales 135614|Xanthomonadales S Could be involved in insertion of integral membrane proteins into the membrane - - - ko:K08998 - - - - ko00000 - - - Haemolytic SRR25158195_k127_1457747_3 391008.Smal_2736 8.827e-226 704.0 COG0044@1|root,COG0044@2|Bacteria,1MW10@1224|Proteobacteria,1RMQC@1236|Gammaproteobacteria,1X34T@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides pyrC - 3.5.2.3 ko:K01465 ko00240,ko01100,map00240,map01100 M00051 R01993 RC00632 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1 SRR25158195_k127_1458134_0 522373.Smlt0684 0.0 1832.0 COG0046@1|root,COG0047@1|root,COG0046@2|Bacteria,COG0047@2|Bacteria,1MYN4@1224|Proteobacteria,1RMRN@1236|Gammaproteobacteria,1X32J@135614|Xanthomonadales 135614|Xanthomonadales F Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate purL GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.3.5.3 ko:K01952 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04463 RC00010,RC01160 ko00000,ko00001,ko00002,ko01000 - - - AIRS_C,GATase_5 SRR25158195_k127_1459005_2 391008.Smal_3155 6.827e-21 95.0 COG0380@1|root,COG0380@2|Bacteria,1MUIY@1224|Proteobacteria,1RNG7@1236|Gammaproteobacteria,1X4MB@135614|Xanthomonadales 135614|Xanthomonadales G Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor otsA - 2.4.1.15,2.4.1.347 ko:K00697 ko00500,ko01100,map00500,map01100 - R02737 RC00005,RC00049,RC02748 ko00000,ko00001,ko01000,ko01003 - GT20 - Glyco_transf_20 SRR25158195_k127_1459005_0 522373.Smlt3742 0.0 1217.0 COG3387@1|root,COG3387@2|Bacteria,1MV08@1224|Proteobacteria,1RS4U@1236|Gammaproteobacteria,1X3IC@135614|Xanthomonadales 135614|Xanthomonadales G Glucoamylase and related glycosyl hydrolases - - - - - - - - - - - - Glyco_hydro_15 SRR25158195_k127_1459005_1 522373.Smlt3741 4.017e-163 518.0 COG1877@1|root,COG1877@2|Bacteria,1RGY2@1224|Proteobacteria,1RNIQ@1236|Gammaproteobacteria,1X4WS@135614|Xanthomonadales 135614|Xanthomonadales G Removes the phosphate from trehalose 6-phosphate to produce free trehalose otsB - 3.1.3.12 ko:K01087 ko00500,ko01100,map00500,map01100 - R02778 RC00017 ko00000,ko00001,ko01000 - - - Trehalose_PPase SRR25158195_k127_1459005_3 1429851.X548_14475 2.857e-15 74.0 COG1629@1|root,COG4771@2|Bacteria,1MUNK@1224|Proteobacteria,1RN9S@1236|Gammaproteobacteria,1X4FQ@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1464280_5 1429851.X548_17965 7.381e-116 378.0 COG1820@1|root,COG1820@2|Bacteria,1MW8Y@1224|Proteobacteria,1RMRV@1236|Gammaproteobacteria,1X9C0@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the metallo-dependent hydrolases superfamily. NagA family - - 3.5.1.25 ko:K01443 ko00520,ko01130,map00520,map01130 - R02059 RC00166,RC00300 ko00000,ko00001,ko01000 - - - Amidohydro_1 SRR25158195_k127_1464280_4 522373.Smlt4437 7.58e-153 488.0 COG1349@1|root,COG1349@2|Bacteria,1MUJT@1224|Proteobacteria,1SZXU@1236|Gammaproteobacteria,1X6YG@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional - - - ko:K02081 - - - - ko00000,ko03000 - - - DeoRC,HTH_DeoR SRR25158195_k127_1464280_1 522373.Smlt4436 5.489e-261 820.0 COG4573@1|root,COG4573@2|Bacteria,1MW3Q@1224|Proteobacteria,1RQAU@1236|Gammaproteobacteria,1X4BC@135614|Xanthomonadales 135614|Xanthomonadales G Tagatose 6 phosphate kinase - - - ko:K16371 ko00052,ko01100,map00052,map01100 - R01069 RC00438,RC00439 ko00000,ko00001 - - - Tagatose_6_P_K SRR25158195_k127_1464280_3 522373.Smlt4435 8.342e-171 539.0 COG1940@1|root,COG1940@2|Bacteria,1MU94@1224|Proteobacteria,1RNHE@1236|Gammaproteobacteria,1XCQ0@135614|Xanthomonadales 135614|Xanthomonadales GK ROK family - - 2.7.1.59 ko:K00884 ko00520,ko01100,map00520,map01100 - R01201 RC00002,RC00017 ko00000,ko00001,ko01000 - - - ROK SRR25158195_k127_1464280_2 522373.Smlt4434 2.206e-231 722.0 COG2222@1|root,COG2222@2|Bacteria,1NICK@1224|Proteobacteria,1RRU0@1236|Gammaproteobacteria,1X5XZ@135614|Xanthomonadales 135614|Xanthomonadales G isomerase agaS - - ko:K02082 - - - - ko00000,ko01000 - - - SIS SRR25158195_k127_1464280_0 391008.Smal_3814 0.0 2169.0 COG1501@1|root,COG1501@2|Bacteria,1MWNJ@1224|Proteobacteria,1RMJ9@1236|Gammaproteobacteria,1X3WR@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 31 family - - - - - - - - - - - - DUF4968,DUF5110,F5_F8_type_C,Glyco_hydro_31,NPCBM SRR25158195_k127_1464280_6 1429851.X548_17935 4.844e-35 135.0 COG1629@1|root,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1XA00@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_1469189_3 1429851.X548_18685 3.656e-42 154.0 COG0463@1|root,COG0463@2|Bacteria,1MW2G@1224|Proteobacteria,1S22P@1236|Gammaproteobacteria,1X3J4@135614|Xanthomonadales 135614|Xanthomonadales M Dolichol-phosphate mannosyltransferase dpm1 - 2.4.1.83 ko:K00721 ko00510,ko01100,map00510,map01100 - R01009 RC00005 ko00000,ko00001,ko01000,ko01003 - GT2 - Glycos_transf_2 SRR25158195_k127_1469189_1 391008.Smal_3961 1.222e-68 237.0 COG3952@1|root,COG3952@2|Bacteria,1NFUX@1224|Proteobacteria,1SJ0F@1236|Gammaproteobacteria,1X6CH@135614|Xanthomonadales 135614|Xanthomonadales S Lipid A Biosynthesis N-terminal domain - - - - - - - - - - - - LAB_N SRR25158195_k127_1469189_0 522373.Smlt4609 0.0 1083.0 COG4805@1|root,COG4805@2|Bacteria,1MUBX@1224|Proteobacteria,1RMT7@1236|Gammaproteobacteria,1X4HY@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - DUF885 SRR25158195_k127_1469189_2 522373.Smlt4608 3.13e-59 206.0 COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,1SP6I@1236|Gammaproteobacteria,1X4PT@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K15726 - - - - ko00000,ko02000 2.A.6.1.2 - - ACR_tran SRR25158195_k127_1471282_0 358220.C380_04350 2.069e-75 259.0 COG1463@1|root,COG1463@2|Bacteria,1NCUG@1224|Proteobacteria,2VRKR@28216|Betaproteobacteria,4ADFP@80864|Comamonadaceae 28216|Betaproteobacteria Q PFAM Mammalian cell entry related domain protein mlaD - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD SRR25158195_k127_1471282_1 688245.CtCNB1_0704 8.768e-55 198.0 COG2853@1|root,COG2853@2|Bacteria,1MVX0@1224|Proteobacteria,2VQ97@28216|Betaproteobacteria,4ADJ3@80864|Comamonadaceae 28216|Betaproteobacteria M PFAM VacJ family lipoprotein vacJ - - ko:K04754 - - - - ko00000 - - - MlaA SRR25158195_k127_1476247_1 391008.Smal_0545 9.085e-269 853.0 COG1404@1|root,COG1404@2|Bacteria,1RDT6@1224|Proteobacteria,1S3CA@1236|Gammaproteobacteria,1XCA2@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the peptidase S8 family - - - ko:K14645 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002,ko03110 - - - PPC,Peptidase_S8 SRR25158195_k127_1476247_0 1429851.X548_01240 0.0 1114.0 COG5295@1|root,COG5295@2|Bacteria,1N338@1224|Proteobacteria,1SED5@1236|Gammaproteobacteria,1X59T@135614|Xanthomonadales 135614|Xanthomonadales UW COG5295 Autotransporter adhesin - - - ko:K21449 - - - - ko00000,ko02000 1.B.40.2 - - ESPR,YadA_anchor,YadA_head,YadA_stalk SRR25158195_k127_1479796_1 1429851.X548_19230 4.354e-149 472.0 COG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,1MVWY@1224|Proteobacteria,1RQ06@1236|Gammaproteobacteria,1X3QM@135614|Xanthomonadales 135614|Xanthomonadales L DNA ligase - - 6.5.1.1 ko:K01971 ko03450,map03450 - R00381 RC00005 ko00000,ko00001,ko01000,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,LigD_N SRR25158195_k127_1479796_0 506534.Rhein_1749 0.0 1317.0 COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,1MV8W@1224|Proteobacteria,1RMQA@1236|Gammaproteobacteria 1236|Gammaproteobacteria P Outer membrane receptor proteins mostly Fe transport - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_1479796_2 1429851.X548_19235 1.979e-21 93.0 2AQDM@1|root,31FJZ@2|Bacteria,1QD6E@1224|Proteobacteria,1T92Y@1236|Gammaproteobacteria,1XBKU@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1487276_2 296591.Bpro_0555 4.669e-12 75.0 COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,2VHJP@28216|Betaproteobacteria,4ACPD@80864|Comamonadaceae 28216|Betaproteobacteria G Trap dicarboxylate transporter, dctm subunit - - - - - - - - - - - - DctM SRR25158195_k127_1487276_1 296591.Bpro_0554 2.928e-66 231.0 COG3090@1|root,COG3090@2|Bacteria,1R3YK@1224|Proteobacteria,2VWZB@28216|Betaproteobacteria 28216|Betaproteobacteria G Tripartite ATP-independent periplasmic transporters, DctQ component - - - ko:K11689 ko02020,map02020 - - - ko00000,ko00001,ko02000 2.A.56.1 - - DctQ SRR25158195_k127_1487276_0 296591.Bpro_0553 4.968e-172 544.0 COG1638@1|root,COG1638@2|Bacteria,1MVHC@1224|Proteobacteria,2VHPJ@28216|Betaproteobacteria,4A9T2@80864|Comamonadaceae 28216|Betaproteobacteria G TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - - - - - - - - - - DctP SRR25158195_k127_1492676_1 522373.Smlt2106 3.434e-251 779.0 COG0765@1|root,COG1126@1|root,COG0765@2|Bacteria,COG1126@2|Bacteria,1MU9Q@1224|Proteobacteria,1RMX1@1236|Gammaproteobacteria,1X63T@135614|Xanthomonadales 135614|Xanthomonadales P ABC transporter - - 3.6.3.21 ko:K02028,ko:K02029 - M00236 - - ko00000,ko00002,ko01000,ko02000 3.A.1.3 - - ABC_tran,BPD_transp_1 SRR25158195_k127_1492676_2 391008.Smal_1701 1.676e-185 582.0 COG0834@1|root,COG0834@2|Bacteria,1MXF7@1224|Proteobacteria,1RRMF@1236|Gammaproteobacteria,1XA3H@135614|Xanthomonadales 135614|Xanthomonadales ET Bacterial periplasmic substrate-binding proteins - - - ko:K02030 - M00236 - - ko00000,ko00002,ko02000 3.A.1.3 - - SBP_bac_3 SRR25158195_k127_1492676_0 522373.Smlt2108 0.0 1539.0 COG3387@1|root,COG3387@2|Bacteria,1RDWY@1224|Proteobacteria,1T141@1236|Gammaproteobacteria,1XD2X@135614|Xanthomonadales 135614|Xanthomonadales G F5/8 type C domain - - - - - - - - - - - - F5_F8_type_C SRR25158195_k127_1499983_0 522373.Smlt4647 9.912e-230 715.0 COG3135@1|root,COG3135@2|Bacteria,1MUS1@1224|Proteobacteria,1RMD5@1236|Gammaproteobacteria,1X567@135614|Xanthomonadales 135614|Xanthomonadales Q protein involved in benzoate metabolism benE - - ko:K05782 - - - - ko00000,ko02000 2.A.46.1 - - BenE SRR25158195_k127_1505483_0 391008.Smal_2339 0.0 1742.0 COG3292@1|root,COG4585@1|root,COG3292@2|Bacteria,COG4585@2|Bacteria,1QU1S@1224|Proteobacteria,1T1MB@1236|Gammaproteobacteria,1X3A7@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3,Reg_prop,Y_Y_Y SRR25158195_k127_1505483_1 509190.Cseg_2097 3.653e-69 242.0 COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,2U0JP@28211|Alphaproteobacteria,2KJZI@204458|Caulobacterales 204458|Caulobacterales K helix_turn_helix, Lux Regulon - - - - - - - - - - - - GerE,Response_reg SRR25158195_k127_1505483_2 1429851.X548_10465 2.316e-40 149.0 COG0477@1|root,COG2814@2|Bacteria,1MVVW@1224|Proteobacteria,1RQCE@1236|Gammaproteobacteria,1XC6Q@135614|Xanthomonadales 135614|Xanthomonadales EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_1508364_1 522373.Smlt3279 4.555e-105 341.0 COG4987@1|root,COG4987@2|Bacteria,1QU1P@1224|Proteobacteria,1RQD7@1236|Gammaproteobacteria,1X4Y1@135614|Xanthomonadales 135614|Xanthomonadales V ABC transporter cydC - - ko:K16012 ko02010,map02010 - - - ko00000,ko00001,ko02000 3.A.1.129 - - ABC_membrane,ABC_tran SRR25158195_k127_1508364_2 522373.Smlt3278 5.775e-60 209.0 COG3326@1|root,COG3326@2|Bacteria,1N6YM@1224|Proteobacteria,1SCMX@1236|Gammaproteobacteria,1X72J@135614|Xanthomonadales 135614|Xanthomonadales K Protein of unknown function (DUF1294) - - - - - - - - - - - - CSD,DUF1294 SRR25158195_k127_1508364_0 522373.Smlt3277 1.531e-233 723.0 COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,1RQ2N@1236|Gammaproteobacteria,1X47D@135614|Xanthomonadales 135614|Xanthomonadales E Transfers a succinyl group from succinyl-CoA to L- serine, forming succinyl-L-serine metX GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.31 ko:K00641 ko00270,ko01100,ko01130,map00270,map01100,map01130 - R01776 RC00004,RC00041 ko00000,ko00001,ko01000 - - - Abhydrolase_1 SRR25158195_k127_1512897_1 522373.Smlt3091 2.188e-68 233.0 2E5AU@1|root,3302Y@2|Bacteria,1MYA3@1224|Proteobacteria,1SBQQ@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Src homology 3 domains - - - - - - - - - - - - SH3_2 SRR25158195_k127_1512897_0 522373.Smlt3092 2.551e-271 836.0 COG0172@1|root,COG0172@2|Bacteria,1MUJF@1224|Proteobacteria,1RNAQ@1236|Gammaproteobacteria,1X570@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) serS - 6.1.1.11 ko:K01875 ko00970,map00970 M00359,M00360 R03662,R08218 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Seryl_tRNA_N,tRNA-synt_2b SRR25158195_k127_1512897_2 522373.Smlt3093 7.178e-62 219.0 COG0810@1|root,COG0810@2|Bacteria,1MZPX@1224|Proteobacteria,1SCVJ@1236|Gammaproteobacteria,1X7BK@135614|Xanthomonadales 135614|Xanthomonadales M Gram-negative bacterial TonB protein C-terminal - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C SRR25158195_k127_151413_0 522373.Smlt2818 2.738e-294 914.0 COG1020@1|root,COG3319@1|root,COG1020@2|Bacteria,COG3319@2|Bacteria,1QK4F@1224|Proteobacteria,1RPAG@1236|Gammaproteobacteria,1X3AB@135614|Xanthomonadales 135614|Xanthomonadales Q non-ribosomal peptide synthetase entF - 6.3.2.14 ko:K02364 ko01053,ko01110,ko01130,map01053,map01110,map01130 - R07644 RC00162,RC03046 ko00000,ko00001,ko01000,ko01008 - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase SRR25158195_k127_151413_2 522373.Smlt2819 5.467e-41 153.0 COG3433@1|root,COG3433@2|Bacteria,1NB35@1224|Proteobacteria,1SUTB@1236|Gammaproteobacteria 1236|Gammaproteobacteria Q Phosphopantetheine attachment site - - - - - - - - - - - - PP-binding SRR25158195_k127_151413_1 391008.Smal_2274 7.104e-61 210.0 COG1535@1|root,COG1535@2|Bacteria,1MW2U@1224|Proteobacteria,1RRZ8@1236|Gammaproteobacteria,1X79J@135614|Xanthomonadales 135614|Xanthomonadales Q Isochorismatase family - - 3.3.2.1,3.3.2.15,6.3.2.14 ko:K01252,ko:K20261 ko00405,ko01053,ko01110,ko01130,ko02024,map00405,map01053,map01110,map01130,map02024 M00835 R03037,R07644,R11463 RC00162,RC00350,RC02148,RC03046 ko00000,ko00001,ko00002,ko01000,ko01008 - - - Isochorismatase SRR25158195_k127_152382_0 522373.Smlt0898 0.0 1929.0 COG0085@1|root,COG0085@2|Bacteria,1MUC4@1224|Proteobacteria,1RMK0@1236|Gammaproteobacteria,1X3ME@135614|Xanthomonadales 135614|Xanthomonadales K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoB GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 ko:K03043 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 SRR25158195_k127_152382_2 522373.Smlt0897 1.248e-60 211.0 COG0222@1|root,COG0222@2|Bacteria,1RGU4@1224|Proteobacteria,1S5V7@1236|Gammaproteobacteria,1X6TB@135614|Xanthomonadales 135614|Xanthomonadales J Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation rplL - - ko:K02935 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L12,Ribosomal_L12_N SRR25158195_k127_152382_1 522373.Smlt0896 1.216e-96 317.0 COG0244@1|root,COG0244@2|Bacteria,1RAN5@1224|Proteobacteria,1S286@1236|Gammaproteobacteria,1X3HT@135614|Xanthomonadales 135614|Xanthomonadales J Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors rplJ GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02864 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L10 SRR25158195_k127_152382_3 522373.Smlt0895 9.209e-52 183.0 COG0081@1|root,COG0081@2|Bacteria,1MUE6@1224|Proteobacteria,1RMDW@1236|Gammaproteobacteria,1X4NJ@135614|Xanthomonadales 135614|Xanthomonadales J Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release rplA GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02863 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L1 SRR25158195_k127_1526109_0 543728.Vapar_0810 0.0 1015.0 COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,2VIJU@28216|Betaproteobacteria,4AB4R@80864|Comamonadaceae 28216|Betaproteobacteria C PFAM acyl-CoA dehydrogenase domain protein - - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_M,Acyl-CoA_dh_N,AcylCoA_DH_N SRR25158195_k127_1526109_1 1123504.JQKD01000083_gene59 2.598e-52 207.0 COG4731@1|root,COG4731@2|Bacteria,1N19Y@1224|Proteobacteria,2VS9I@28216|Betaproteobacteria,4AED0@80864|Comamonadaceae 28216|Betaproteobacteria S Uncharacterized protein conserved in bacteria (DUF2147) - - - - - - - - - - - - DUF2147 SRR25158195_k127_1533514_4 1429851.X548_00215 3.543e-105 342.0 COG4948@1|root,COG4948@2|Bacteria,1MU8R@1224|Proteobacteria,1RNM4@1236|Gammaproteobacteria,1X35B@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the mandelate racemase muconate lactonizing enzyme family - - 5.1.1.20 ko:K19802 - - R10938 RC03309 ko00000,ko01000 - - - MR_MLE_C,MR_MLE_N SRR25158195_k127_1533514_2 391008.Smal_0340 4.762e-286 882.0 COG0791@1|root,COG0791@2|Bacteria,1R45H@1224|Proteobacteria,1RZDR@1236|Gammaproteobacteria,1X5RQ@135614|Xanthomonadales 135614|Xanthomonadales M COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - - - - - - - - - - - - NLPC_P60,SH3_6,SH3_7 SRR25158195_k127_1533514_1 1429851.X548_00225 1.923e-289 892.0 COG1305@1|root,COG1305@2|Bacteria,1R72E@1224|Proteobacteria,1S1BR@1236|Gammaproteobacteria,1X3JE@135614|Xanthomonadales 135614|Xanthomonadales E transglutaminase - - - - - - - - - - - - Transglut_core SRR25158195_k127_1533514_0 84531.JMTZ01000055_gene2575 0.0 1186.0 COG1629@1|root,COG4771@2|Bacteria,1MW4X@1224|Proteobacteria,1RPVY@1236|Gammaproteobacteria,1X48Y@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec SRR25158195_k127_1533514_3 391008.Smal_0343 5.452e-274 850.0 COG1680@1|root,COG1680@2|Bacteria,1MVZN@1224|Proteobacteria,1RP0R@1236|Gammaproteobacteria,1X45H@135614|Xanthomonadales 135614|Xanthomonadales V COG1680 Beta-lactamase class C and other penicillin binding proteins - - - - - - - - - - - - Beta-lactamase,DUF3471 SRR25158195_k127_1533514_5 522373.Smlt0463 1.232e-27 117.0 COG2173@1|root,COG2173@2|Bacteria,1RENK@1224|Proteobacteria,1S3SJ@1236|Gammaproteobacteria,1X64M@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide ddpX - 3.4.13.22 ko:K08641 ko01502,ko02020,map01502,map02020 M00651 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504 - - - Peptidase_M15 SRR25158195_k127_1541196_2 1348657.M622_14845 8.936e-61 213.0 COG2878@1|root,COG2878@2|Bacteria,1MUWU@1224|Proteobacteria,2VN5I@28216|Betaproteobacteria,2KVNK@206389|Rhodocyclales 206389|Rhodocyclales C Part of a membrane complex involved in electron transport - - - ko:K03616 - - - - ko00000 - - - FeS,Fer4_21 SRR25158195_k127_1541196_1 1056512.D515_03322 2.074e-82 277.0 COG4657@1|root,COG4657@2|Bacteria,1MU8X@1224|Proteobacteria,1RQDN@1236|Gammaproteobacteria,1XSIP@135623|Vibrionales 135623|Vibrionales C Part of a membrane complex involved in electron transport rnfA GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0055114 - ko:K03617 - - - - ko00000 - - - Rnf-Nqr SRR25158195_k127_1541196_0 713586.KB900536_gene2727 2.115e-195 617.0 COG0143@1|root,COG0143@2|Bacteria,1MUBY@1224|Proteobacteria,1RMYM@1236|Gammaproteobacteria,1WWU6@135613|Chromatiales 135613|Chromatiales J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation metG - 6.1.1.10 ko:K01874 ko00450,ko00970,map00450,map00970 M00359,M00360 R03659,R04773 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1g,tRNA_bind SRR25158195_k127_1545853_0 391008.Smal_2996 1.798e-264 814.0 COG1164@1|root,COG1164@2|Bacteria,1MWYN@1224|Proteobacteria,1RS2Q@1236|Gammaproteobacteria,1X3UN@135614|Xanthomonadales 135614|Xanthomonadales E Angiotensin-converting enzyme - - 3.4.15.1 ko:K01283 ko04614,ko04924,ko05142,ko05410,map04614,map04924,map05142,map05410 - - - ko00000,ko00001,ko01000,ko01002,ko04090,ko04147 - - - Peptidase_M2 SRR25158195_k127_1545853_1 522373.Smlt3576 6.207e-69 237.0 29ZKJ@1|root,30MKY@2|Bacteria,1QB3T@1224|Proteobacteria,1T6MM@1236|Gammaproteobacteria,1X7SE@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1558147_4 522373.Smlt0675 3.124e-37 141.0 COG0260@1|root,COG0260@2|Bacteria,1MUF9@1224|Proteobacteria,1RNM1@1236|Gammaproteobacteria,1X38B@135614|Xanthomonadales 135614|Xanthomonadales E Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides pepA - 3.4.11.1 ko:K01255 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - Peptidase_M17,Peptidase_M17_N SRR25158195_k127_1558147_1 1429851.X548_01205 1.175e-202 636.0 COG0795@1|root,COG0795@2|Bacteria,1MUF2@1224|Proteobacteria,1RMN5@1236|Gammaproteobacteria,1X46N@135614|Xanthomonadales 135614|Xanthomonadales S permease - - - ko:K07091 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko02000 1.B.42.1 - - YjgP_YjgQ SRR25158195_k127_1558147_0 1429851.X548_01210 4.163e-221 688.0 COG0795@1|root,COG0795@2|Bacteria,1MVW3@1224|Proteobacteria,1RM8H@1236|Gammaproteobacteria,1X3ZW@135614|Xanthomonadales 135614|Xanthomonadales S overlaps another CDS with the same product name - - - ko:K11720 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko02000 1.B.42.1 - - YjgP_YjgQ SRR25158195_k127_1558147_3 391008.Smal_0539 2.291e-86 288.0 COG1714@1|root,COG1714@2|Bacteria,1N7R6@1224|Proteobacteria,1SCCT@1236|Gammaproteobacteria,1X706@135614|Xanthomonadales 135614|Xanthomonadales S RDD family - - - - - - - - - - - - RDD SRR25158195_k127_1558147_2 391008.Smal_0540 1.357e-188 594.0 COG4974@1|root,COG4974@2|Bacteria,1MVNF@1224|Proteobacteria,1RPI8@1236|Gammaproteobacteria,1X3EP@135614|Xanthomonadales 135614|Xanthomonadales L Tyrosine recombinase xerD xerD - - ko:K04763 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase SRR25158195_k127_1559271_5 391008.Smal_3630 2.167e-69 237.0 COG4232@1|root,COG4232@2|Bacteria,1MU8W@1224|Proteobacteria,1RPF7@1236|Gammaproteobacteria,1X43V@135614|Xanthomonadales 135614|Xanthomonadales CO Thiol disulfide Interchange Protein dsbD - 1.8.1.8 ko:K04084 - - - - ko00000,ko01000,ko03110 5.A.1.1 - - DsbC,DsbD,Thioredoxin_7 SRR25158195_k127_1559271_6 391008.Smal_3629 2.866e-56 214.0 COG1324@1|root,COG1324@2|Bacteria,1N6TN@1224|Proteobacteria,1SCFM@1236|Gammaproteobacteria,1X7GP@135614|Xanthomonadales 135614|Xanthomonadales P protein involved in tolerance to divalent cations cutA - - ko:K03926 - - - - ko00000 - - - CutA1 SRR25158195_k127_1559271_0 522373.Smlt4216 0.0 1143.0 COG2356@1|root,COG2374@1|root,COG2356@2|Bacteria,COG2374@2|Bacteria,1R64W@1224|Proteobacteria,1RZ3W@1236|Gammaproteobacteria,1X59R@135614|Xanthomonadales 135614|Xanthomonadales L Ribonuclease - - - - - - - - - - - - Big_5,Endonuclease_1,LTD SRR25158195_k127_1559271_7 391008.Smal_3627 1.001e-53 189.0 COG0234@1|root,COG0234@2|Bacteria,1MZ2X@1224|Proteobacteria,1S8YR@1236|Gammaproteobacteria,1X7IA@135614|Xanthomonadales 135614|Xanthomonadales O Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter groS GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - ko:K04078 - - - - ko00000,ko03029,ko03110 - - - Cpn10 SRR25158195_k127_1559271_1 391008.Smal_3626 0.0 1024.0 COG0459@1|root,COG0459@2|Bacteria,1MURR@1224|Proteobacteria,1RMTB@1236|Gammaproteobacteria,1X3SN@135614|Xanthomonadales 135614|Xanthomonadales O Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions groEL GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - ko:K04077 ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 - - - Cpn60_TCP1 SRR25158195_k127_1559271_2 1429851.X548_16875 7.571e-213 674.0 COG1680@1|root,COG1680@2|Bacteria,1RIYG@1224|Proteobacteria,1SB75@1236|Gammaproteobacteria,1XBF5@135614|Xanthomonadales 135614|Xanthomonadales V Beta-lactamase - - - - - - - - - - - - Beta-lactamase SRR25158195_k127_1559271_4 391008.Smal_3618 4.717e-82 281.0 COG1846@1|root,COG1846@2|Bacteria,1RH0E@1224|Proteobacteria,1S5KH@1236|Gammaproteobacteria 1236|Gammaproteobacteria K helix_turn_helix multiple antibiotic resistance protein - - - - - - - - - - - - MarR,MarR_2 SRR25158195_k127_1559271_3 522373.Smlt4206 4.822e-115 380.0 COG4335@1|root,COG4335@2|Bacteria,1P0C1@1224|Proteobacteria,1RXUC@1236|Gammaproteobacteria,1XBKJ@135614|Xanthomonadales 135614|Xanthomonadales L DNA alkylation repair enzyme - - - - - - - - - - - - DNA_alkylation SRR25158195_k127_1564766_0 266779.Meso_4483 4.546e-237 757.0 COG0747@1|root,COG0747@2|Bacteria,1MU3P@1224|Proteobacteria,2TT4M@28211|Alphaproteobacteria,43R94@69277|Phyllobacteriaceae 28211|Alphaproteobacteria E Bacterial extracellular solute-binding proteins, family 5 Middle - - - ko:K02035 ko02024,map02024 M00239 - - ko00000,ko00001,ko00002,ko02000 3.A.1.5 - - SBP_bac_5 SRR25158195_k127_1564766_1 1040983.AXAE01000018_gene5959 1.6e-29 126.0 COG2801@1|root,COG2801@2|Bacteria,1MWVQ@1224|Proteobacteria,2TQPC@28211|Alphaproteobacteria 1224|Proteobacteria L Transposase and inactivated derivatives - - - - - - - - - - - - HTH_23,HTH_28,HTH_29,rve SRR25158195_k127_1568552_1 1118235.CAJH01000003_gene137 2.405e-118 392.0 COG3405@1|root,COG3405@2|Bacteria,1MW17@1224|Proteobacteria,1RNEU@1236|Gammaproteobacteria,1X4JS@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - - - - - - - - - - Glyco_hydro_8 SRR25158195_k127_1568552_0 1429851.X548_01355 0.0 1238.0 COG0457@1|root,COG0457@2|Bacteria,1MVB8@1224|Proteobacteria,1RPSN@1236|Gammaproteobacteria,1X9DU@135614|Xanthomonadales 135614|Xanthomonadales S Cellulose synthase operon protein C C-terminus (BCSC_C) - - - ko:K20543 - - - - ko00000,ko02000 1.B.55.3 - - BCSC_C,TPR_16,TPR_19 SRR25158195_k127_1570268_2 391008.Smal_1241 6.884e-82 280.0 COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,1RYJT@1236|Gammaproteobacteria,1X47F@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_1570268_0 1429851.X548_04935 1.715e-166 526.0 COG0697@1|root,COG0697@2|Bacteria,1MZQM@1224|Proteobacteria,1RS0P@1236|Gammaproteobacteria,1X4DJ@135614|Xanthomonadales 135614|Xanthomonadales EG Drug metabolite transporter - - - - - - - - - - - - EamA SRR25158195_k127_1570268_1 391008.Smal_1243 1.509e-164 518.0 COG0652@1|root,COG0652@2|Bacteria,1QCY4@1224|Proteobacteria,1RRUQ@1236|Gammaproteobacteria,1XCF4@135614|Xanthomonadales 135614|Xanthomonadales M Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - 5.2.1.8 ko:K01802 - - - - ko00000,ko01000 - - - Pro_isomerase SRR25158195_k127_157386_0 391008.Smal_2640 8.655e-271 841.0 COG0022@1|root,COG1071@1|root,COG0022@2|Bacteria,COG1071@2|Bacteria,1P31Y@1224|Proteobacteria,1RQNS@1236|Gammaproteobacteria,1X4XU@135614|Xanthomonadales 135614|Xanthomonadales C MFS transporter - - 1.2.4.4 ko:K11381 ko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130 M00036 R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00027,RC00627,RC02743,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh,Transket_pyr,Transketolase_C SRR25158195_k127_157386_1 1429851.X548_11670 9.566e-128 415.0 COG0625@1|root,COG0625@2|Bacteria,1REDI@1224|Proteobacteria,1S13N@1236|Gammaproteobacteria,1X4XE@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the GST superfamily gst5 - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C,GST_N,GST_N_3 SRR25158195_k127_157386_2 391008.Smal_2642 4.37e-112 366.0 COG1670@1|root,COG1670@2|Bacteria,1RD77@1224|Proteobacteria,1SZ7D@1236|Gammaproteobacteria,1X62B@135614|Xanthomonadales 135614|Xanthomonadales J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 SRR25158195_k127_157386_3 522373.Smlt3210 3.877e-68 231.0 COG3134@1|root,COG3134@2|Bacteria,1MVWD@1224|Proteobacteria,1RQR9@1236|Gammaproteobacteria,1X4BG@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - Rick_17kDa_Anti SRR25158195_k127_1578670_2 391008.Smal_0630 1.389e-259 804.0 COG0192@1|root,COG0192@2|Bacteria,1MUFQ@1224|Proteobacteria,1RNV6@1236|Gammaproteobacteria,1X4BJ@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme metK GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 ko:K00789 ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230 M00034,M00035,M00368,M00609 R00177,R04771 RC00021,RC01211 ko00000,ko00001,ko00002,ko01000 - - - S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N SRR25158195_k127_1578670_3 522373.Smlt0779 4.275e-95 322.0 COG1607@1|root,COG1607@2|Bacteria,1RAEQ@1224|Proteobacteria,1S3Z2@1236|Gammaproteobacteria,1X6NQ@135614|Xanthomonadales 135614|Xanthomonadales I Thioesterase superfamily - - - - - - - - - - - - 4HBT SRR25158195_k127_1578670_0 391008.Smal_0628 0.0 1682.0 COG2352@1|root,COG2352@2|Bacteria,1MUD5@1224|Proteobacteria,1RPTP@1236|Gammaproteobacteria,1X4MI@135614|Xanthomonadales 135614|Xanthomonadales C Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle ppc GO:0003674,GO:0003824,GO:0004611,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008964,GO:0016829,GO:0016830,GO:0016831,GO:0044424,GO:0044444,GO:0044464 4.1.1.31 ko:K01595 ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200 M00168,M00170,M00171,M00172,M00173,M00346,M00374 R00345 RC02741 ko00000,ko00001,ko00002,ko01000 - - - PEPcase SRR25158195_k127_1578670_1 522373.Smlt0777 7.585e-265 816.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1N75C@1224|Proteobacteria,1RXY1@1236|Gammaproteobacteria,1X51F@135614|Xanthomonadales 135614|Xanthomonadales E Prolyl oligopeptidase family - - - - - - - - - - - - PD40,Peptidase_S9 SRR25158195_k127_1582530_3 1429851.X548_19420 2.407e-105 347.0 COG0790@1|root,COG0790@2|Bacteria,1R909@1224|Proteobacteria,1SXRX@1236|Gammaproteobacteria,1X6NK@135614|Xanthomonadales 135614|Xanthomonadales S COG0790 FOG TPR repeat, SEL1 subfamily - - - - - - - - - - - - - SRR25158195_k127_1582530_0 522373.Smlt0091 0.0 1096.0 COG3131@1|root,COG3131@2|Bacteria,1MUNX@1224|Proteobacteria,1RMEB@1236|Gammaproteobacteria,1X360@135614|Xanthomonadales 135614|Xanthomonadales P Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs) opgD GO:0000271,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0016051,GO:0030288,GO:0030313,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0042597,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044464,GO:0051273,GO:0051274,GO:0071704,GO:1901576 - ko:K03670 - - - - ko00000 - - - MdoG SRR25158195_k127_1582530_2 522373.Smlt0090 7.812e-171 537.0 COG0266@1|root,COG0266@2|Bacteria,1MVM5@1224|Proteobacteria,1RP3J@1236|Gammaproteobacteria,1X3ZV@135614|Xanthomonadales 135614|Xanthomonadales L Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates fpg - 3.2.2.23,4.2.99.18 ko:K10563 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Fapy_DNA_glyco,H2TH,zf-FPG_IleRS SRR25158195_k127_1582530_4 391008.Smal_0043 1.072e-48 191.0 COG5126@1|root,COG5126@2|Bacteria,1NH5D@1224|Proteobacteria,1T15Q@1236|Gammaproteobacteria,1X7TG@135614|Xanthomonadales 135614|Xanthomonadales DTZ EF hand - - - - - - - - - - - - EF-hand_5 SRR25158195_k127_1582530_1 522373.Smlt0088 1.468e-221 687.0 COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,1RSN1@1236|Gammaproteobacteria,1X377@135614|Xanthomonadales 135614|Xanthomonadales I desaturase - - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - DDE_Tnp_ISL3,FA_desaturase SRR25158195_k127_1592762_1 522373.Smlt4635 9.646e-182 576.0 COG0752@1|root,COG0752@2|Bacteria,1MVCJ@1224|Proteobacteria,1RMYI@1236|Gammaproteobacteria,1X31P@135614|Xanthomonadales 135614|Xanthomonadales J glycyl-tRNA synthetase alpha subunit glyQ - 6.1.1.14 ko:K01878 ko00970,map00970 M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2e SRR25158195_k127_1592762_0 391008.Smal_3984 0.0 1190.0 COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,1RMBS@1236|Gammaproteobacteria,1X329@135614|Xanthomonadales 135614|Xanthomonadales NU Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB gspE - - ko:K02454 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSE,T2SSE_N SRR25158195_k127_1592762_5 84531.JMTZ01000010_gene3148 4.85e-72 251.0 COG0518@1|root,COG0518@2|Bacteria,1MV9U@1224|Proteobacteria,1S49E@1236|Gammaproteobacteria,1X380@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group - - 6.3.5.2 ko:K01951 ko00230,ko00983,ko01100,map00230,map00983,map01100 M00050 R01230,R01231,R08244 RC00010,RC00204 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase SRR25158195_k127_1592762_3 522373.Smlt4638 8.944e-152 494.0 COG5473@1|root,COG5473@2|Bacteria,1R8RR@1224|Proteobacteria,1S395@1236|Gammaproteobacteria,1X461@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1592762_4 522373.Smlt4639 7.449e-151 481.0 COG0805@1|root,COG0805@2|Bacteria,1MVAY@1224|Proteobacteria,1RPRN@1236|Gammaproteobacteria,1X5D1@135614|Xanthomonadales 135614|Xanthomonadales U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides tatC - - ko:K03118 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - TatC SRR25158195_k127_1592762_6 522373.Smlt4640 9.19e-56 199.0 COG1826@1|root,COG1826@2|Bacteria,1N73F@1224|Proteobacteria,1SD9K@1236|Gammaproteobacteria,1X7WK@135614|Xanthomonadales 135614|Xanthomonadales U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation tatB - - ko:K03117 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 SRR25158195_k127_1592762_8 522373.Smlt4641 2.504e-37 142.0 COG1826@1|root,COG1826@2|Bacteria,1N6S4@1224|Proteobacteria,1SCC7@1236|Gammaproteobacteria,1X840@135614|Xanthomonadales 135614|Xanthomonadales U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system tatA - - ko:K03116 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 SRR25158195_k127_1592762_2 522373.Smlt4642 1.567e-173 546.0 COG2930@1|root,COG2930@2|Bacteria,1RHV6@1224|Proteobacteria,1SDNN@1236|Gammaproteobacteria,1X44C@135614|Xanthomonadales 135614|Xanthomonadales S Las17-binding protein actin regulator - - - - - - - - - - - - Ysc84 SRR25158195_k127_1592762_7 1429851.X548_18825 1.178e-53 191.0 COG0276@1|root,COG0276@2|Bacteria,1MVR1@1224|Proteobacteria,1RMMS@1236|Gammaproteobacteria,1X47U@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the ferrous insertion into protoporphyrin IX hemH GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 ko:K01772 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R00310,R11329 RC01012 ko00000,ko00001,ko00002,ko01000 - - - Ferrochelatase SRR25158195_k127_1594266_3 522373.Smlt3702 4.012e-79 265.0 COG1729@1|root,COG1729@2|Bacteria,1MUSV@1224|Proteobacteria,1RQWA@1236|Gammaproteobacteria,1X5DD@135614|Xanthomonadales 135614|Xanthomonadales D Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division cpoB - - - - - - - - - - - TPR_16,TPR_6,TolA_bind_tri SRR25158195_k127_1594266_2 522373.Smlt3703 2.84e-105 342.0 COG2885@1|root,COG2885@2|Bacteria,1MZTV@1224|Proteobacteria,1S8RG@1236|Gammaproteobacteria,1X5FX@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the ompA family pal - - ko:K03640 - - - - ko00000,ko02000 2.C.1.2 - - OmpA SRR25158195_k127_1594266_0 522373.Smlt3704 6.505e-284 874.0 COG0823@1|root,COG0823@2|Bacteria,1MV09@1224|Proteobacteria,1RMCY@1236|Gammaproteobacteria,1X3CZ@135614|Xanthomonadales 135614|Xanthomonadales U Involved in the TonB-independent uptake of proteins tolB - - ko:K03641 - - - - ko00000,ko02000 2.C.1.2 - - PD40,TolB_N SRR25158195_k127_1594266_1 522373.Smlt3705 8.937e-141 451.0 COG3064@1|root,COG3064@2|Bacteria,1RKZU@1224|Proteobacteria,1S72T@1236|Gammaproteobacteria,1X3C2@135614|Xanthomonadales 135614|Xanthomonadales M Membrane protein TolA tolA - - ko:K03646 - - - - ko00000,ko02000 2.C.1.2 - - TonB_2 SRR25158195_k127_1594639_3 522373.Smlt3693 9.867e-82 274.0 COG0454@1|root,COG0456@2|Bacteria,1RDH4@1224|Proteobacteria,1SCMT@1236|Gammaproteobacteria,1X66P@135614|Xanthomonadales 135614|Xanthomonadales K acetyltransferase - - 2.3.1.57 ko:K22441 - - - - ko00000,ko01000 - - - Acetyltransf_1,Acetyltransf_10 SRR25158195_k127_1594639_2 1429851.X548_14205 4.881e-175 557.0 COG3667@1|root,COG3667@2|Bacteria,1MXW6@1224|Proteobacteria,1RZEY@1236|Gammaproteobacteria,1XC11@135614|Xanthomonadales 135614|Xanthomonadales P copper resistance - - - ko:K07233 - - - - ko00000 - - - CopB SRR25158195_k127_1594639_0 1429851.X548_14200 0.0 1202.0 COG2132@1|root,COG2132@2|Bacteria,1MU0J@1224|Proteobacteria,1RQ4N@1236|Gammaproteobacteria,1X3SD@135614|Xanthomonadales 135614|Xanthomonadales Q multicopper copA - - - - - - - - - - - Cu-oxidase,Cu-oxidase_3 SRR25158195_k127_1594639_1 1429851.X548_14190 3.922e-222 690.0 COG0514@1|root,COG0514@2|Bacteria,1MVGG@1224|Proteobacteria,1RMPG@1236|Gammaproteobacteria,1X3DB@135614|Xanthomonadales 135614|Xanthomonadales L DNA helicase recQ - 3.6.4.12 ko:K03654 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,HRDC,Helicase_C,RQC,RecQ_Zn_bind SRR25158195_k127_160878_1 522373.Smlt3283 7.999e-61 211.0 COG1294@1|root,COG1294@2|Bacteria,1MURP@1224|Proteobacteria,1RP7F@1236|Gammaproteobacteria,1X477@135614|Xanthomonadales 135614|Xanthomonadales C oxidase, subunit cydB - 1.10.3.14 ko:K00426 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00153 R11325 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - Cyt_bd_oxida_II SRR25158195_k127_160878_2 522373.Smlt3284 5.448e-17 80.0 COG4890@1|root,COG4890@2|Bacteria 2|Bacteria S oxidoreductase activity, acting on diphenols and related substances as donors ybgT GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0008152,GO:0016020,GO:0016021,GO:0016491,GO:0016679,GO:0019867,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0055114,GO:0071944 1.10.3.14 ko:K00424 ko00190,ko02020,map00190,map02020 M00153 - - ko00000,ko00001,ko01000 3.D.4.3 - - YbgT_YccB SRR25158195_k127_160878_4 224911.27350827 5.131e-05 46.0 2F0SV@1|root,33TUX@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - SRR25158195_k127_160878_3 224911.27350827 6.98e-06 50.0 2F0SV@1|root,33TUX@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - SRR25158195_k127_160878_0 522373.Smlt3287 4.652e-231 724.0 COG2807@1|root,COG2807@2|Bacteria,1MXGT@1224|Proteobacteria,1RRH1@1236|Gammaproteobacteria,1X49F@135614|Xanthomonadales 135614|Xanthomonadales P MFS transporter cynX - - ko:K03449 - - - - ko00000,ko02000 2.A.1.17 - - MFS_1 SRR25158195_k127_1608817_0 522373.Smlt0962 0.0 1263.0 COG3591@1|root,COG3591@2|Bacteria,1MX71@1224|Proteobacteria,1RRGG@1236|Gammaproteobacteria,1XD93@135614|Xanthomonadales 135614|Xanthomonadales E Peptidase S46 - - - - - - - - - - - - Peptidase_S46 SRR25158195_k127_1609255_0 522373.Smlt1645 2.5e-250 774.0 COG0322@1|root,COG0322@2|Bacteria,1MV38@1224|Proteobacteria,1RNGV@1236|Gammaproteobacteria,1X3C0@135614|Xanthomonadales 135614|Xanthomonadales L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision uvrC GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - ko:K03703 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - GIY-YIG,HHH_5,UVR,UvrC_HhH_N SRR25158195_k127_1609255_1 391008.Smal_1404 1.305e-128 411.0 COG0558@1|root,COG0558@2|Bacteria,1RCZ7@1224|Proteobacteria,1S465@1236|Gammaproteobacteria,1X300@135614|Xanthomonadales 135614|Xanthomonadales I Belongs to the CDP-alcohol phosphatidyltransferase class-I family pgsA - 2.7.8.5 ko:K00995 ko00564,ko01100,map00564,map01100 - R01801 RC00002,RC00017,RC02795 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf SRR25158195_k127_1609255_2 159087.Daro_2204 1.157e-59 227.0 28MZS@1|root,2ZB6E@2|Bacteria,1R8QV@1224|Proteobacteria,2VMF4@28216|Betaproteobacteria,2KYJP@206389|Rhodocyclales 206389|Rhodocyclales - - - - - - - - - - - - - - - SRR25158195_k127_1609450_6 391008.Smal_0625 1.342e-28 114.0 COG2606@1|root,COG2606@2|Bacteria,1RGX5@1224|Proteobacteria,1S6S0@1236|Gammaproteobacteria,1X7Q2@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily ybaK - - ko:K03976 - - - - ko00000,ko01000,ko03016 - - - tRNA_edit SRR25158195_k127_1609450_5 391008.Smal_0624 5.548e-88 295.0 2EIF7@1|root,33C6K@2|Bacteria,1NJ02@1224|Proteobacteria,1SVAB@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_1609450_3 1429851.X548_01700 1.243e-120 388.0 29VSF@1|root,2ZC88@2|Bacteria,1RB1H@1224|Proteobacteria,1S2TE@1236|Gammaproteobacteria,1X3SB@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3228) - - - - - - - - - - - - DUF3228 SRR25158195_k127_1609450_2 522373.Smlt0767 1.517e-173 554.0 COG0685@1|root,COG0685@2|Bacteria,1MUC9@1224|Proteobacteria,1RMXS@1236|Gammaproteobacteria,1X3E1@135614|Xanthomonadales 135614|Xanthomonadales E Methylenetetrahydrofolate reductase metF - 1.5.1.20 ko:K00297 ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523 M00377 R01224,R07168 RC00081 ko00000,ko00001,ko00002,ko01000 - - - MTHFR SRR25158195_k127_1609450_4 391008.Smal_0613 6.146e-90 300.0 2AQYN@1|root,31G7B@2|Bacteria,1QDZP@1224|Proteobacteria,1TA8V@1236|Gammaproteobacteria,1X8MR@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - DUF4124 SRR25158195_k127_1609450_1 391008.Smal_0612 4.02e-179 565.0 COG0352@1|root,COG0494@1|root,COG0352@2|Bacteria,COG0494@2|Bacteria,1RCZM@1224|Proteobacteria,1RS3S@1236|Gammaproteobacteria,1X3N9@135614|Xanthomonadales 135614|Xanthomonadales HL Belongs to the Nudix hydrolase family - - 3.6.1.55 ko:K03574 - - - - ko00000,ko01000,ko03400 - - - NUDIX,NUDIX_4,TMP-TENI SRR25158195_k127_1609450_0 1429851.X548_01660 0.0 1119.0 COG0653@1|root,COG0653@2|Bacteria,1MUJZ@1224|Proteobacteria,1RM9M@1236|Gammaproteobacteria,1X4SH@135614|Xanthomonadales 135614|Xanthomonadales U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane secA GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - ko:K03070 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4 - - SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW SRR25158195_k127_1614371_0 391008.Smal_3148 0.0 1024.0 COG0659@1|root,COG0659@2|Bacteria,1MXA7@1224|Proteobacteria,1RQYD@1236|Gammaproteobacteria,1X46G@135614|Xanthomonadales 135614|Xanthomonadales P secondary active sulfate transmembrane transporter activity - - - ko:K06901 - - - - ko00000,ko02000 2.A.1.40 - - - SRR25158195_k127_1614371_3 522373.Smlt3734 2.07e-136 453.0 COG0625@1|root,COG0625@2|Bacteria,1N8XH@1224|Proteobacteria,1SJPR@1236|Gammaproteobacteria,1X3U2@135614|Xanthomonadales 135614|Xanthomonadales O Glutathione S-transferase - - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C_3 SRR25158195_k127_1614371_1 522373.Smlt3733 5.516e-153 487.0 COG1711@1|root,COG1711@2|Bacteria,1RIA0@1224|Proteobacteria,1S715@1236|Gammaproteobacteria,1X6CW@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3014) - - - - - - - - - - - - DUF3014 SRR25158195_k127_1614371_2 1429851.X548_14440 3.524e-148 470.0 COG0542@1|root,COG0542@2|Bacteria,1MURH@1224|Proteobacteria,1RN55@1236|Gammaproteobacteria,1X499@135614|Xanthomonadales 135614|Xanthomonadales O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE clpB - - ko:K03695 ko04213,map04213 - - - ko00000,ko00001,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N SRR25158195_k127_1615646_0 1118235.CAJH01000019_gene1040 3.54e-159 506.0 COG2850@1|root,COG2850@2|Bacteria,1MUAC@1224|Proteobacteria,1RQQP@1236|Gammaproteobacteria,1X5EK@135614|Xanthomonadales 135614|Xanthomonadales S Cupin-like domain - - - - - - - - - - - - Cupin_8 SRR25158195_k127_1615646_1 391008.Smal_3677 2.033e-124 402.0 COG2199@1|root,COG3290@1|root,COG3290@2|Bacteria,COG3706@2|Bacteria,1MX83@1224|Proteobacteria,1RMRP@1236|Gammaproteobacteria,1X7P0@135614|Xanthomonadales 135614|Xanthomonadales T Cache domain - - - - - - - - - - - - GGDEF,dCache_1 SRR25158195_k127_1620311_4 391008.Smal_0972 1.928e-145 462.0 COG0593@1|root,COG0593@2|Bacteria,1MVW6@1224|Proteobacteria,1RPJP@1236|Gammaproteobacteria,1X3QH@135614|Xanthomonadales 135614|Xanthomonadales L Belongs to the DnaA family. HdA subfamily hda - - ko:K10763 - - - - ko00000,ko03032 - - - Bac_DnaA,IstB_IS21 SRR25158195_k127_1620311_1 391008.Smal_0971 1.186e-224 700.0 COG0628@1|root,COG0628@2|Bacteria,1MW0B@1224|Proteobacteria,1RPVP@1236|Gammaproteobacteria,1X45E@135614|Xanthomonadales 135614|Xanthomonadales S permease perM - - - - - - - - - - - AI-2E_transport SRR25158195_k127_1620311_0 522373.Smlt1127 1.094e-231 720.0 COG3249@1|root,COG3249@2|Bacteria,1N0PD@1224|Proteobacteria,1S9C4@1236|Gammaproteobacteria,1X4TQ@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - ko:K09938 - - - - ko00000 - - - DUF2066 SRR25158195_k127_1620311_2 391008.Smal_0969 1.012e-220 689.0 COG0150@1|root,COG0150@2|Bacteria,1MURG@1224|Proteobacteria,1RNZZ@1236|Gammaproteobacteria,1X33C@135614|Xanthomonadales 135614|Xanthomonadales F Phosphoribosylformylglycinamidine cyclo-ligase purM - 6.3.3.1 ko:K01933 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04208 RC01100 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C SRR25158195_k127_1620311_8 391008.Smal_0968 6.259e-72 248.0 2EHW5@1|root,33BMQ@2|Bacteria,1P29Q@1224|Proteobacteria,1T710@1236|Gammaproteobacteria,1X8K7@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1620311_6 1429851.X548_03430 4.482e-117 379.0 COG0299@1|root,COG0299@2|Bacteria,1MWN1@1224|Proteobacteria,1RMHS@1236|Gammaproteobacteria,1X5GJ@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate purN - 2.1.2.2 ko:K11175 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - - Formyl_trans_N SRR25158195_k127_1620311_3 522373.Smlt1122 6.663e-157 497.0 2BJ82@1|root,32DHI@2|Bacteria,1RHVJ@1224|Proteobacteria,1S6YB@1236|Gammaproteobacteria,1X627@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3108) - - - - - - - - - - - - DUF3108 SRR25158195_k127_1620311_5 391008.Smal_0963 9.92e-137 441.0 2E0PN@1|root,32W8D@2|Bacteria,1N3FT@1224|Proteobacteria,1SAK6@1236|Gammaproteobacteria,1X59J@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3108) - - - - - - - - - - - - DUF3108 SRR25158195_k127_1620311_9 391008.Smal_0962 1.019e-54 201.0 2A0BM@1|root,30NF4@2|Bacteria,1QB9G@1224|Proteobacteria,1T6TW@1236|Gammaproteobacteria,1X856@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1620311_7 522373.Smlt1119 7.194e-106 344.0 COG0766@1|root,COG0766@2|Bacteria,1MUH7@1224|Proteobacteria,1RN91@1236|Gammaproteobacteria,1X48Z@135614|Xanthomonadales 135614|Xanthomonadales M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine murA - 2.5.1.7 ko:K00790 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R00660 RC00350 ko00000,ko00001,ko01000,ko01011 - - - EPSP_synthase SRR25158195_k127_1622561_2 522373.Smlt4632 0.0 1215.0 COG2911@1|root,COG2911@2|Bacteria,1MUVD@1224|Proteobacteria,1RMMF@1236|Gammaproteobacteria,1X41H@135614|Xanthomonadales 135614|Xanthomonadales S Pathogenicity protein - - - ko:K09800 - - - - ko00000,ko02000 - - - TamB SRR25158195_k127_1622561_1 1429851.X548_18765 0.0 1343.0 COG3206@1|root,COG3591@1|root,COG3206@2|Bacteria,COG3591@2|Bacteria,1MX71@1224|Proteobacteria,1RRGG@1236|Gammaproteobacteria,1X4YU@135614|Xanthomonadales 135614|Xanthomonadales EM Peptidase S46 - - - - - - - - - - - - Peptidase_S46 SRR25158195_k127_1622561_0 522373.Smlt4627 0.0 2236.0 COG0591@1|root,COG0642@1|root,COG0745@1|root,COG0591@2|Bacteria,COG0745@2|Bacteria,COG2205@2|Bacteria,1MUY7@1224|Proteobacteria,1RP2U@1236|Gammaproteobacteria,1X43U@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,PAS_7,Response_reg SRR25158195_k127_1630438_2 391008.Smal_1051 6.566e-51 183.0 COG2199@1|root,COG3706@2|Bacteria,1MZV7@1224|Proteobacteria,1RPR0@1236|Gammaproteobacteria,1X4VF@135614|Xanthomonadales 135614|Xanthomonadales T MASE2 domain - - 2.7.7.65 ko:K18968 ko02026,map02026 - - - ko00000,ko00001,ko01000,ko02000 9.B.34.1.2 - - GGDEF,MASE2 SRR25158195_k127_1630438_0 391008.Smal_2072 1.069e-104 352.0 COG3577@1|root,COG3577@2|Bacteria,1PAPJ@1224|Proteobacteria 1224|Proteobacteria S gag-polyprotein putative aspartyl protease - - - - - - - - - - - - Asp_protease_2 SRR25158195_k127_1630438_1 1429851.X548_08810 9.966e-61 210.0 COG5455@1|root,COG5455@2|Bacteria,1NQ06@1224|Proteobacteria 1224|Proteobacteria S Nickel/cobalt transporter regulator - - - - - - - - - - - - RcnB SRR25158195_k127_1630438_3 1112217.PPL19_13165 1.326e-19 89.0 COG0583@1|root,COG0583@2|Bacteria,1N0HM@1224|Proteobacteria 1224|Proteobacteria K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_1641816_3 59538.XP_005977984.1 1.851e-19 88.0 COG0187@1|root,COG1190@1|root,KOG0355@2759|Eukaryota,KOG1885@2759|Eukaryota,39WG1@33154|Opisthokonta,3BNSE@33208|Metazoa 33208|Metazoa B DNA gyrase C-terminal domain, beta-propeller - - - - - - - - - - - - DNA_gyraseA_C,DNA_topoisoIV SRR25158195_k127_1641816_1 391008.Smal_2581 2.479e-194 608.0 COG2269@1|root,COG2269@2|Bacteria,1MU97@1224|Proteobacteria,1RMR9@1236|Gammaproteobacteria,1X456@135614|Xanthomonadales 135614|Xanthomonadales J Elongation factor P--(R)-beta-lysine ligase lysS - - ko:K04568 - - - - ko00000,ko01000,ko03012 - - - tRNA-synt_2 SRR25158195_k127_1641816_2 522373.Smlt3141 8.506e-93 310.0 COG0454@1|root,COG0456@2|Bacteria,1RDVI@1224|Proteobacteria,1SA3M@1236|Gammaproteobacteria,1X8I1@135614|Xanthomonadales 135614|Xanthomonadales K Acetyltransferase (GNAT) family - - - - - - - - - - - - Acetyltransf_1 SRR25158195_k127_1641816_0 391008.Smal_2583 3.225e-232 721.0 COG0272@1|root,COG0272@2|Bacteria,1MV3R@1224|Proteobacteria,1RPAV@1236|Gammaproteobacteria,1X2ZU@135614|Xanthomonadales 135614|Xanthomonadales L DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA ligA GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 ko:K01972 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00382 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5 SRR25158195_k127_1647549_0 391008.Smal_3355 0.0 1176.0 COG0784@1|root,COG4191@1|root,COG4251@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,COG4251@2|Bacteria,1QTVB@1224|Proteobacteria,1T1K3@1236|Gammaproteobacteria,1XD9Y@135614|Xanthomonadales 135614|Xanthomonadales T PAS fold - - 2.7.13.3 ko:K10819 - - - - ko00000,ko01000 - - - HATPase_c,HisKA,PAS_7,Response_reg,dCache_1 SRR25158195_k127_1647549_1 1429851.X548_15420 9.007e-255 788.0 COG3746@1|root,COG3746@2|Bacteria,1RA39@1224|Proteobacteria,1S2UH@1236|Gammaproteobacteria,1X5ED@135614|Xanthomonadales 135614|Xanthomonadales P phosphate-selective porin oprO - - ko:K07221 - - - - ko00000,ko02000 1.B.5.1 - - Porin_O_P SRR25158195_k127_1656796_0 1118235.CAJH01000022_gene1333 0.0 1101.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X41A@135614|Xanthomonadales 135614|Xanthomonadales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K18303 - M00642 - - ko00000,ko00002,ko01504,ko02000 2.A.6.2.17 - - ACR_tran SRR25158195_k127_1656796_3 522373.Smlt3923 2.547e-181 570.0 COG0583@1|root,COG0583@2|Bacteria,1MV06@1224|Proteobacteria,1RPI0@1236|Gammaproteobacteria,1X516@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_1656796_4 522373.Smlt3922 2.224e-154 490.0 COG1028@1|root,COG1028@2|Bacteria,1QMHJ@1224|Proteobacteria,1RR78@1236|Gammaproteobacteria,1X55Y@135614|Xanthomonadales 135614|Xanthomonadales IQ KR domain - - - - - - - - - - - - adh_short_C2 SRR25158195_k127_1656796_2 391008.Smal_3336 1.456e-211 662.0 COG0473@1|root,COG0473@2|Bacteria,1MUH4@1224|Proteobacteria,1RMZQ@1236|Gammaproteobacteria,1X4UN@135614|Xanthomonadales 135614|Xanthomonadales CE Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate leuB GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 ko:K00052 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R00994,R04426,R10052 RC00084,RC00417,RC03036 br01601,ko00000,ko00001,ko00002,ko01000 - - - Iso_dh SRR25158195_k127_1656796_6 767434.Fraau_3197 1.539e-63 226.0 COG0066@1|root,COG0066@2|Bacteria,1MVXB@1224|Proteobacteria,1RNMK@1236|Gammaproteobacteria,1X3N1@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuD - 4.2.1.33,4.2.1.35 ko:K01704 ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R10170 RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase_C SRR25158195_k127_1656796_1 522373.Smlt3919 4.815e-298 916.0 COG0065@1|root,COG0065@2|Bacteria,1MVYR@1224|Proteobacteria,1RMF6@1236|Gammaproteobacteria,1X3KZ@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate leuC - 4.2.1.33,4.2.1.35 ko:K01703 ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230 M00432,M00535 R03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170 RC00497,RC00976,RC00977,RC01041,RC01046,RC03072 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase SRR25158195_k127_1656796_5 1429851.X548_15305 1.141e-85 284.0 COG4106@1|root,COG4106@2|Bacteria,1Q2Y3@1224|Proteobacteria,1S2MJ@1236|Gammaproteobacteria,1X6B4@135614|Xanthomonadales 135614|Xanthomonadales S Methionine biosynthesis protein MetW - - - - - - - - - - - - Methyltransf_11 SRR25158195_k127_1660111_0 1118235.CAJH01000018_gene1027 1.982e-240 743.0 COG0104@1|root,COG0104@2|Bacteria,1MU5B@1224|Proteobacteria,1RNEW@1236|Gammaproteobacteria,1X2X7@135614|Xanthomonadales 135614|Xanthomonadales F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP purA GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 ko:K01939 ko00230,ko00250,ko01100,map00230,map00250,map01100 M00049 R01135 RC00458,RC00459 ko00000,ko00001,ko00002,ko01000 - - - Adenylsucc_synt SRR25158195_k127_1660111_3 522373.Smlt3590 1.374e-108 355.0 COG0739@1|root,COG0739@2|Bacteria,1RK7E@1224|Proteobacteria,1RYS2@1236|Gammaproteobacteria,1X698@135614|Xanthomonadales 135614|Xanthomonadales M Peptidase family M23 - - - ko:K21472 - - - - ko00000,ko01000,ko01002,ko01011 - - - Peptidase_M23 SRR25158195_k127_1660111_1 1429851.X548_13690 2.428e-189 595.0 COG1376@1|root,COG3409@1|root,COG1376@2|Bacteria,COG3409@2|Bacteria,1MVI4@1224|Proteobacteria,1S1IH@1236|Gammaproteobacteria,1X71U@135614|Xanthomonadales 135614|Xanthomonadales M peptidoglycan-binding protein - - - - - - - - - - - - PG_binding_1,YkuD SRR25158195_k127_1660111_2 522373.Smlt3588 8.215e-185 581.0 COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X3KX@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - - - - - - - - - - 4HB_MCP_1,HAMP,MCPsignal SRR25158195_k127_1661193_0 391008.Smal_2754 0.0 1019.0 COG0323@1|root,COG0323@2|Bacteria,1MV61@1224|Proteobacteria,1RM89@1236|Gammaproteobacteria,1X4XY@135614|Xanthomonadales 135614|Xanthomonadales L This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex mutL GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03572 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - DNA_mis_repair,HATPase_c_3,MutL_C SRR25158195_k127_1670331_0 391008.Smal_1945 0.0 1279.0 COG0480@1|root,COG0480@2|Bacteria,1MUCV@1224|Proteobacteria,1RNSZ@1236|Gammaproteobacteria,1X3TY@135614|Xanthomonadales 135614|Xanthomonadales J elongation factor G - - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2 SRR25158195_k127_1670331_3 391008.Smal_1943 3.585e-137 446.0 COG4559@1|root,COG4559@2|Bacteria,1RD7N@1224|Proteobacteria,1RPUV@1236|Gammaproteobacteria,1X6PS@135614|Xanthomonadales 135614|Xanthomonadales P Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system hmuV - 3.6.3.34 ko:K02013 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.14 - - ABC_tran SRR25158195_k127_1670331_1 522373.Smlt2356 1.367e-199 628.0 COG0609@1|root,COG0609@2|Bacteria,1MV9W@1224|Proteobacteria,1RMDF@1236|Gammaproteobacteria,1X5XI@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily - - - ko:K02015 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko02000 3.A.1.14 - - FecCD SRR25158195_k127_1670331_2 522373.Smlt2355 1.678e-198 622.0 COG4558@1|root,COG4558@2|Bacteria,1QTSV@1224|Proteobacteria,1RNCT@1236|Gammaproteobacteria,1X7XC@135614|Xanthomonadales 135614|Xanthomonadales P Periplasmic binding protein - - - ko:K02016 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko02000 3.A.1.14 - - Peripla_BP_2 SRR25158195_k127_1670331_4 391008.Smal_1940 5.458e-64 219.0 COG3391@1|root,COG3391@2|Bacteria,1MXBS@1224|Proteobacteria,1S7V0@1236|Gammaproteobacteria 1236|Gammaproteobacteria DZ regulator of chromosome condensation, RCC1 - - - - - - - - - - - - - SRR25158195_k127_1672263_2 522373.Smlt3799 8.837e-128 414.0 COG0546@1|root,COG0546@2|Bacteria,1REXF@1224|Proteobacteria,1S5AR@1236|Gammaproteobacteria,1X67T@135614|Xanthomonadales 135614|Xanthomonadales S hydrolase idgB - 3.1.3.18 ko:K01091 ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130 - R01334 RC00017 ko00000,ko00001,ko01000 - - - HAD_2 SRR25158195_k127_1672263_0 1429851.X548_14750 2.877e-235 730.0 COG0126@1|root,COG0126@2|Bacteria,1MUNU@1224|Proteobacteria,1RMUQ@1236|Gammaproteobacteria,1X35T@135614|Xanthomonadales 135614|Xanthomonadales F Belongs to the phosphoglycerate kinase family pgk - 2.7.2.3 ko:K00927 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01512 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGK SRR25158195_k127_1672263_1 522373.Smlt3802 6.406e-149 473.0 2B3X8@1|root,31WM6@2|Bacteria,1RFRT@1224|Proteobacteria,1SY9Y@1236|Gammaproteobacteria,1XCRU@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3999) - - - - - - - - - - - - DUF3999 SRR25158195_k127_1672897_1 522373.Smlt0701 2.047e-166 526.0 COG1216@1|root,COG1216@2|Bacteria,1QP7Y@1224|Proteobacteria,1RR12@1236|Gammaproteobacteria,1X4AI@135614|Xanthomonadales 135614|Xanthomonadales S glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 SRR25158195_k127_1672897_0 522373.Smlt0697 0.0 1326.0 COG1450@1|root,COG1450@2|Bacteria,1MUUA@1224|Proteobacteria,1RPJS@1236|Gammaproteobacteria,1X372@135614|Xanthomonadales 135614|Xanthomonadales NU General secretion pathway protein xpsD - - ko:K02453 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - Secretin,Secretin_N SRR25158195_k127_1672897_2 391008.Smal_0555 2.809e-63 221.0 2C8JT@1|root,31A2G@2|Bacteria,1RKRE@1224|Proteobacteria,1SI91@1236|Gammaproteobacteria,1X6XN@135614|Xanthomonadales 135614|Xanthomonadales S General secretion pathway protein xpsN - - ko:K02463 ko05111,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - - SRR25158195_k127_1675397_0 1121380.JNIW01000017_gene2949 8.206e-93 335.0 COG3899@1|root,COG3899@2|Bacteria 2|Bacteria T PFAM Protein kinase domain - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - AAA_16,Trans_reg_C SRR25158195_k127_1675397_1 1121933.AUHH01000002_gene1796 3.377e-09 70.0 COG3899@1|root,COG3899@2|Bacteria,2ICSV@201174|Actinobacteria 201174|Actinobacteria T AAA ATPase domain - - - - - - - - - - - - - SRR25158195_k127_1676128_0 391008.Smal_2883 5.722e-279 859.0 COG1249@1|root,COG1249@2|Bacteria,1MU2Z@1224|Proteobacteria,1RMC0@1236|Gammaproteobacteria,1X3TZ@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family gor - 1.8.1.7 ko:K00383 ko00480,ko04918,map00480,map04918 - R00094,R00115 RC00011 ko00000,ko00001,ko01000 - - - Pyr_redox_2,Pyr_redox_dim SRR25158195_k127_1676128_1 1429851.X548_13005 3.606e-112 365.0 COG0697@1|root,COG0697@2|Bacteria,1MYHQ@1224|Proteobacteria,1SZQB@1236|Gammaproteobacteria,1XCR1@135614|Xanthomonadales 135614|Xanthomonadales EG EamA-like transporter family - - - - - - - - - - - - EamA SRR25158195_k127_1679385_0 522373.Smlt3334 2.659e-233 726.0 COG1570@1|root,COG1570@2|Bacteria,1MUA4@1224|Proteobacteria,1RNAZ@1236|Gammaproteobacteria,1X4MX@135614|Xanthomonadales 135614|Xanthomonadales L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides xseA - 3.1.11.6 ko:K03601 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_L,tRNA_anti_2 SRR25158195_k127_1679385_1 522373.Smlt3333 6.888e-147 469.0 COG1600@1|root,COG1600@2|Bacteria,1MV1H@1224|Proteobacteria,1RMD9@1236|Gammaproteobacteria,1X3CD@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) queG GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 ko:K18979 - - - - ko00000,ko01000,ko03016 - - - DUF1730,Fer4_16 SRR25158195_k127_1692647_3 1163407.UU7_14865 1.964e-17 87.0 COG0457@1|root,COG3710@1|root,COG0457@2|Bacteria,COG3710@2|Bacteria,1N2RT@1224|Proteobacteria,1SBVW@1236|Gammaproteobacteria,1X9I7@135614|Xanthomonadales 135614|Xanthomonadales K COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - TPR_16,Trans_reg_C SRR25158195_k127_1692647_1 1429851.X548_12565 1.324e-185 589.0 COG1680@1|root,COG1680@2|Bacteria,1NHIY@1224|Proteobacteria,1S719@1236|Gammaproteobacteria,1X3ZP@135614|Xanthomonadales 135614|Xanthomonadales V Beta-lactamase class C and other penicillin binding proteins - - - - - - - - - - - - Beta-lactamase SRR25158195_k127_1692647_0 391008.Smal_2809 2.428e-246 762.0 COG3325@1|root,COG3325@2|Bacteria,1MWAR@1224|Proteobacteria,1RPNS@1236|Gammaproteobacteria,1X5BZ@135614|Xanthomonadales 135614|Xanthomonadales G chitinase - - 3.2.1.14 ko:K01183 ko00520,ko01100,map00520,map01100 - R01206,R02334 RC00467 ko00000,ko00001,ko01000 - GH18 - Calx-beta,Glyco_hydro_18 SRR25158195_k127_1692647_2 522373.Smlt3381 4.576e-117 378.0 COG3182@1|root,COG3182@2|Bacteria,1MVET@1224|Proteobacteria,1RPPB@1236|Gammaproteobacteria,1X4YP@135614|Xanthomonadales 135614|Xanthomonadales S iron-regulated membrane protein - - - - - - - - - - - - PepSY_TM SRR25158195_k127_17143_0 522373.Smlt0936 0.0 1023.0 COG1629@1|root,COG4771@2|Bacteria,1MWB3@1224|Proteobacteria,1RY5Z@1236|Gammaproteobacteria,1X3EV@135614|Xanthomonadales 135614|Xanthomonadales M receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_17143_1 1429851.X548_02465 7.098e-103 335.0 COG1495@1|root,COG1495@2|Bacteria,1RIJE@1224|Proteobacteria,1S6WD@1236|Gammaproteobacteria,1X6GW@135614|Xanthomonadales 135614|Xanthomonadales O Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein dsbB - - ko:K03611 - - - - ko00000,ko03110 5.A.2.1 - - DsbB SRR25158195_k127_1718638_1 391008.Smal_0090 2.558e-147 475.0 COG0312@1|root,COG0312@2|Bacteria,1MUSK@1224|Proteobacteria,1SZQQ@1236|Gammaproteobacteria,1X52F@135614|Xanthomonadales 135614|Xanthomonadales S TldD protein - - - ko:K03568 - - - - ko00000,ko01002 - - - PmbA_TldD SRR25158195_k127_1718638_0 522373.Smlt0131 0.0 1006.0 COG0312@1|root,COG0312@2|Bacteria,1NSH6@1224|Proteobacteria,1RR3H@1236|Gammaproteobacteria,1X5KD@135614|Xanthomonadales 135614|Xanthomonadales S TldD protein - - - ko:K03568 - - - - ko00000,ko01002 - - - PmbA_TldD SRR25158195_k127_1729665_1 1429851.X548_00790 5.993e-11 64.0 COG0764@1|root,COG0764@2|Bacteria,1MWV8@1224|Proteobacteria,1RP6W@1236|Gammaproteobacteria,1X5SK@135614|Xanthomonadales 135614|Xanthomonadales I Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl- ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)- decenoyl-ACP. Can catalyze the dehydratase reaction for beta- hydroxyacyl-ACPs with saturated chain lengths up to 16 0, being most active on intermediate chain length fabA - 4.2.1.59,5.3.3.14 ko:K01716 ko00061,ko01100,ko01212,map00061,map01100,map01212 M00083 R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07639 RC00831,RC01078,RC01095 ko00000,ko00001,ko00002,ko01000,ko01004 - - - FabA SRR25158195_k127_1729665_0 391008.Smal_0455 3.804e-219 683.0 COG0389@1|root,COG0389@2|Bacteria,1MUUH@1224|Proteobacteria,1RMFM@1236|Gammaproteobacteria,1X3D0@135614|Xanthomonadales 135614|Xanthomonadales L Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII dinB - 2.7.7.7 ko:K02346 - - - - ko00000,ko01000,ko03400 - - - IMS,IMS_C,IMS_HHH SRR25158195_k127_1734098_1 1429851.X548_15780 2.78e-64 228.0 COG1629@1|root,COG4774@1|root,COG1629@2|Bacteria,COG4774@2|Bacteria,1MV8W@1224|Proteobacteria,1RMQA@1236|Gammaproteobacteria,1X3B5@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_1734098_0 391008.Smal_3425 3.229e-201 630.0 COG0837@1|root,COG0837@2|Bacteria,1MVFI@1224|Proteobacteria,1RNUY@1236|Gammaproteobacteria,1X2YT@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the bacterial glucokinase family glk2 - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Glucokinase SRR25158195_k127_1735707_0 522373.Smlt3337 4.786e-229 709.0 COG1262@1|root,COG1262@2|Bacteria,1NQ5K@1224|Proteobacteria,1S6X1@1236|Gammaproteobacteria,1X450@135614|Xanthomonadales 135614|Xanthomonadales S Sulfatase-modifying factor enzyme 1 - - - - - - - - - - - - FGE-sulfatase SRR25158195_k127_1735707_1 391008.Smal_2760 2.864e-180 566.0 COG0501@1|root,COG0501@2|Bacteria,1MUNA@1224|Proteobacteria,1SN6U@1236|Gammaproteobacteria,1X5QM@135614|Xanthomonadales 135614|Xanthomonadales O peptidase - - - - - - - - - - - - Peptidase_M48 SRR25158195_k127_1735707_2 1429851.X548_12285 2.66e-18 84.0 COG1570@1|root,COG1570@2|Bacteria,1MUA4@1224|Proteobacteria,1RNAZ@1236|Gammaproteobacteria,1X4MX@135614|Xanthomonadales 135614|Xanthomonadales L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides xseA - 3.1.11.6 ko:K03601 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_L,tRNA_anti_2 SRR25158195_k127_173667_5 522373.Smlt2054 3.471e-78 261.0 COG0105@1|root,COG0105@2|Bacteria,1R9ZA@1224|Proteobacteria,1S1Z3@1236|Gammaproteobacteria,1X62I@135614|Xanthomonadales 135614|Xanthomonadales F Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate ndk GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 ko:K00940 ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016 M00049,M00050,M00052,M00053 R00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895 RC00002 ko00000,ko00001,ko00002,ko01000,ko04131 - - - NDK SRR25158195_k127_173667_0 391008.Smal_1657 4.984e-256 794.0 COG0820@1|root,COG0820@2|Bacteria,1MUYK@1224|Proteobacteria,1RMUI@1236|Gammaproteobacteria,1X39G@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs rlmN GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 ko:K06941 - - - - ko00000,ko01000,ko03009 - - - Fer4_14,Radical_SAM SRR25158195_k127_173667_4 1118235.CAJH01000010_gene667 2.28e-78 270.0 COG3063@1|root,COG3063@2|Bacteria,1MXPC@1224|Proteobacteria,1RY78@1236|Gammaproteobacteria,1X5IM@135614|Xanthomonadales 135614|Xanthomonadales NU type IV pilus biogenesis stability protein PilW pilF - - ko:K02656 - - - - ko00000,ko02035,ko02044 - - - TPR_10,TPR_16,TPR_17,TPR_2,TPR_6,TPR_8 SRR25158195_k127_173667_2 522373.Smlt2057 5.82e-156 495.0 COG1426@1|root,COG1426@2|Bacteria,1N240@1224|Proteobacteria,1RQMV@1236|Gammaproteobacteria,1X5X4@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - ko:K15539 - - - - ko00000 - - - DUF4115,HTH_25 SRR25158195_k127_173667_3 1429851.X548_07190 1.827e-120 389.0 COG2976@1|root,COG2976@2|Bacteria,1N117@1224|Proteobacteria,1S95P@1236|Gammaproteobacteria,1X733@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - TPR_21 SRR25158195_k127_173667_1 391008.Smal_1661 2.094e-166 529.0 COG1520@1|root,COG1520@2|Bacteria,1MXIJ@1224|Proteobacteria,1RN4V@1236|Gammaproteobacteria,1X43X@135614|Xanthomonadales 135614|Xanthomonadales M Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamB GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114 - ko:K17713 - - - - ko00000,ko02000 1.B.33.1 - - PQQ_2,PQQ_3 SRR25158195_k127_1742798_2 1385517.N800_13895 1.05e-135 441.0 COG0745@1|root,COG0784@1|root,COG0840@1|root,COG1511@1|root,COG2203@1|root,COG2770@1|root,COG5002@1|root,COG0745@2|Bacteria,COG0784@2|Bacteria,COG0840@2|Bacteria,COG1511@2|Bacteria,COG2203@2|Bacteria,COG2770@2|Bacteria,COG5002@2|Bacteria,1NC9X@1224|Proteobacteria,1SVEC@1236|Gammaproteobacteria,1XDBG@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - CHASE3,GAF_2,HATPase_c,HisKA,Response_reg SRR25158195_k127_1742798_1 913325.N799_06400 2.395e-235 734.0 COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,1RMEN@1236|Gammaproteobacteria,1X37F@135614|Xanthomonadales 135614|Xanthomonadales U Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family gltP - - ko:K03309 - - - - ko00000 2.A.23 - - SDF SRR25158195_k127_1742798_0 913325.N799_06395 3.726e-309 953.0 COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,1RMWP@1236|Gammaproteobacteria,1X498@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate tktA - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C,Transketolase_N SRR25158195_k127_1754347_5 391008.Smal_3752 7.377e-123 395.0 COG2378@1|root,COG2378@2|Bacteria,1MXS8@1224|Proteobacteria,1RYN3@1236|Gammaproteobacteria,1X5YZ@135614|Xanthomonadales 135614|Xanthomonadales K WYL domain - - - - - - - - - - - - HTH_11,WYL SRR25158195_k127_1754347_7 522373.Smlt4342 4.025e-70 239.0 COG0346@1|root,COG0346@2|Bacteria,1N00H@1224|Proteobacteria,1SAEZ@1236|Gammaproteobacteria,1XAWS@135614|Xanthomonadales 135614|Xanthomonadales E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase SRR25158195_k127_1754347_0 522373.Smlt4341 6.197e-269 835.0 COG0508@1|root,COG0508@2|Bacteria,1MVDC@1224|Proteobacteria,1RQ9Y@1236|Gammaproteobacteria,1X3QW@135614|Xanthomonadales 135614|Xanthomonadales C Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex - - 2.3.1.12 ko:K00627 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200 M00307 R00209,R02569 RC00004,RC02742,RC02857 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,Biotin_lipoyl,E3_binding SRR25158195_k127_1754347_6 1429851.X548_17515 7.991e-77 257.0 2E5AU@1|root,33IMG@2|Bacteria,1NHTJ@1224|Proteobacteria,1SFRA@1236|Gammaproteobacteria,1X8UV@135614|Xanthomonadales 135614|Xanthomonadales S Src homology 3 domains - - - - - - - - - - - - SH3_1,SH3_2 SRR25158195_k127_1754347_2 863365.XHC_0445 1.284e-202 635.0 COG0022@1|root,COG0022@2|Bacteria,1R8KB@1224|Proteobacteria,1RP3G@1236|Gammaproteobacteria,1X44Z@135614|Xanthomonadales 135614|Xanthomonadales C Pyruvate 2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit pdhB - 1.2.4.1 ko:K00162 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 M00307 R00014,R00209,R01699,R03270 RC00004,RC00027,RC00627,RC02742,RC02744,RC02882 br01601,ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C SRR25158195_k127_1754347_1 522373.Smlt4338 1.89e-215 673.0 COG1071@1|root,COG1071@2|Bacteria,1MU5R@1224|Proteobacteria,1RREX@1236|Gammaproteobacteria,1X3WI@135614|Xanthomonadales 135614|Xanthomonadales C COG1071 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit pdhA - 1.2.4.1 ko:K00161 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 M00307 R00014,R00209,R01699,R03270 RC00004,RC00027,RC00627,RC02742,RC02744,RC02882 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh SRR25158195_k127_1754347_3 1429851.X548_17500 3.122e-188 591.0 COG3483@1|root,COG3483@2|Bacteria,1MW68@1224|Proteobacteria,1RXYM@1236|Gammaproteobacteria,1X3GY@135614|Xanthomonadales 135614|Xanthomonadales E Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety kynA GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009117,GO:0009150,GO:0009259,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019693,GO:0019752,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051186,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 ko:K00453 ko00380,ko01100,map00380,map01100 M00038 R00678 RC00356 ko00000,ko00001,ko00002,ko01000 - - - Trp_dioxygenase SRR25158195_k127_1754347_4 522373.Smlt4335 5.083e-150 477.0 COG3104@1|root,COG3104@2|Bacteria,1MW6W@1224|Proteobacteria,1RM8P@1236|Gammaproteobacteria,1X3CQ@135614|Xanthomonadales 135614|Xanthomonadales E Transporter yhiP - - ko:K03305 - - - - ko00000 2.A.17 - - PTR2 SRR25158195_k127_1757487_0 392499.Swit_0943 1.102e-191 625.0 COG0404@1|root,COG0446@1|root,COG0404@2|Bacteria,COG0446@2|Bacteria,1MVEK@1224|Proteobacteria,2TTD7@28211|Alphaproteobacteria,2K2JT@204457|Sphingomonadales 204457|Sphingomonadales E Belongs to the GcvT family - - 1.5.3.1 ko:K00302 ko00260,ko01100,map00260,map01100 - R00610 RC00060,RC00557 ko00000,ko00001,ko01000 - - - Fer2_4,GCV_T,GCV_T_C,Pyr_redox_2 SRR25158195_k127_175767_0 391008.Smal_1607 2.787e-190 597.0 COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,1RMUR@1236|Gammaproteobacteria,1X3UY@135614|Xanthomonadales 135614|Xanthomonadales V ABC transporter draA - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran SRR25158195_k127_175767_1 1118235.CAJH01000010_gene729 6.097e-88 298.0 COG1739@1|root,COG1739@2|Bacteria,1NFJC@1224|Proteobacteria,1RPBF@1236|Gammaproteobacteria,1X5ZP@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized protein family UPF0029 - - - - - - - - - - - - DUF1949,UPF0029 SRR25158195_k127_175767_2 391008.Smal_1609 2.019e-30 120.0 2EMWI@1|root,33FIT@2|Bacteria,1NI6A@1224|Proteobacteria,1T6R4@1236|Gammaproteobacteria,1X7YR@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1762573_2 522373.Smlt0429 4.433e-131 420.0 COG0843@1|root,COG0843@2|Bacteria,1MU7S@1224|Proteobacteria,1RPC3@1236|Gammaproteobacteria,1X34C@135614|Xanthomonadales 135614|Xanthomonadales C Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B ctaD - 1.9.3.1 ko:K02274 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.2,3.D.4.3,3.D.4.4,3.D.4.6 - - COX1 SRR25158195_k127_1762573_1 1429851.X548_00075 2.574e-139 443.0 COG1622@1|root,COG1622@2|Bacteria,1MWHZ@1224|Proteobacteria,1RP4H@1236|Gammaproteobacteria,1X3IF@135614|Xanthomonadales 135614|Xanthomonadales C Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) ctaC - 1.9.3.1 ko:K02275 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.2,3.D.4.4,3.D.4.6 - - COX2,COX2_TM,Cytochrome_CBB3 SRR25158195_k127_1762573_4 522373.Smlt0428 3.854e-38 143.0 COG1622@1|root,COG1622@2|Bacteria,1MWHZ@1224|Proteobacteria,1RP4H@1236|Gammaproteobacteria,1X3IF@135614|Xanthomonadales 135614|Xanthomonadales C Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) ctaC - 1.9.3.1 ko:K02275 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.2,3.D.4.4,3.D.4.6 - - COX2,COX2_TM,Cytochrome_CBB3 SRR25158195_k127_1762573_3 522373.Smlt0427 2.782e-113 366.0 COG5488@1|root,COG5488@2|Bacteria,1RGEC@1224|Proteobacteria,1T7Q3@1236|Gammaproteobacteria,1X7QB@135614|Xanthomonadales 135614|Xanthomonadales S Integral membrane protein (DUF2244) - - - - - - - - - - - - DUF2244 SRR25158195_k127_1762573_0 391008.Smal_0308 0.0 1053.0 COG0506@1|root,COG4230@1|root,COG0506@2|Bacteria,COG4230@2|Bacteria,1MV93@1224|Proteobacteria,1RN48@1236|Gammaproteobacteria,1X36U@135614|Xanthomonadales 135614|Xanthomonadales CE Oxidizes proline to glutamate for use as a carbon and nitrogen source putA - 1.2.1.88,1.5.5.2 ko:K13821 ko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130 - R00245,R00707,R00708,R01253,R04444,R04445,R05051 RC00080,RC00083,RC00216,RC00242,RC00255 ko00000,ko00001,ko01000,ko03000 - - - Aldedh,Pro_dh,Pro_dh-DNA_bdg SRR25158195_k127_1763302_0 522373.Smlt2737 0.0 2500.0 COG2911@1|root,COG2911@2|Bacteria,1QXZF@1224|Proteobacteria,1T4A0@1236|Gammaproteobacteria,1XD9H@135614|Xanthomonadales 135614|Xanthomonadales S Filamentous haemagglutinin family outer membrane protein - - - - - - - - - - - - DUF3739,Haemagg_act SRR25158195_k127_1775970_1 391008.Smal_0003 1.279e-222 691.0 COG1195@1|root,COG1195@2|Bacteria,1MX8N@1224|Proteobacteria,1RN5P@1236|Gammaproteobacteria,1X3R9@135614|Xanthomonadales 135614|Xanthomonadales L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP recF GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - ko:K03629 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - AAA_23,SMC_N SRR25158195_k127_1775970_0 391008.Smal_0004 0.0 1572.0 COG0187@1|root,COG0187@2|Bacteria,1MVKT@1224|Proteobacteria,1RNB2@1236|Gammaproteobacteria,1X51M@135614|Xanthomonadales 135614|Xanthomonadales L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrB - 5.99.1.3 ko:K02470 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim SRR25158195_k127_1775970_2 522373.Smlt0006 6.875e-17 82.0 COG1266@1|root,COG1266@2|Bacteria,1NID0@1224|Proteobacteria,1RTEP@1236|Gammaproteobacteria,1X7CW@135614|Xanthomonadales 135614|Xanthomonadales S CAAX protease self-immunity - - - ko:K07052 - - - - ko00000 - - - Abi SRR25158195_k127_1786788_2 1429851.X548_01330 3.113e-76 256.0 COG2194@1|root,COG2194@2|Bacteria,1MWJY@1224|Proteobacteria,1RN4T@1236|Gammaproteobacteria,1X46Y@135614|Xanthomonadales 135614|Xanthomonadales S Cellulose biosynthesis protein BcsG - - - - - - - - - - - - CBP_BcsG SRR25158195_k127_1786788_1 1429851.X548_01340 3.187e-126 413.0 COG1192@1|root,COG1192@2|Bacteria,1MXFI@1224|Proteobacteria,1RYAG@1236|Gammaproteobacteria 1236|Gammaproteobacteria D Cellulose synthase yhjQ - - - - - - - - - - - CBP_BcsQ SRR25158195_k127_1786788_0 1429851.X548_01345 0.0 1652.0 COG1215@1|root,COG1215@2|Bacteria,1MWF8@1224|Proteobacteria,1RPJ6@1236|Gammaproteobacteria,1X4N5@135614|Xanthomonadales 135614|Xanthomonadales M Cellulose synthase - - 2.4.1.12 ko:K00694 ko00500,ko01100,ko02026,map00500,map01100,map02026 - R02889 RC00005 ko00000,ko00001,ko01000,ko01003,ko02000 4.D.3.1.2,4.D.3.1.5,4.D.3.1.6 GT2 - Cellulose_synt,Glycos_transf_2,PilZ SRR25158195_k127_1786788_3 1429851.X548_01350 1.713e-71 243.0 COG1215@1|root,COG1215@2|Bacteria,1MWF8@1224|Proteobacteria,1RPJ6@1236|Gammaproteobacteria,1X51R@135614|Xanthomonadales 135614|Xanthomonadales M cellulose synthase - - - ko:K20541 - - - - ko00000,ko02000 4.D.3.1.6 - - BcsB SRR25158195_k127_1791612_4 935863.AWZR01000001_gene1851 2.468e-74 253.0 COG2755@1|root,COG2755@2|Bacteria,1RCXZ@1224|Proteobacteria,1S3QU@1236|Gammaproteobacteria,1X5YJ@135614|Xanthomonadales 135614|Xanthomonadales E COG2755 Lysophospholipase L1 and related esterases - - 3.1.1.5 ko:K10804 ko01040,map01040 - - - ko00000,ko00001,ko01000,ko01004 - - - Lipase_GDSL_2 SRR25158195_k127_1791612_2 522373.Smlt4188 9.801e-156 493.0 COG1028@1|root,COG1028@2|Bacteria,1R71K@1224|Proteobacteria,1SYFC@1236|Gammaproteobacteria,1X2Z6@135614|Xanthomonadales 135614|Xanthomonadales IQ Tropinone reductase trn2 - 1.1.1.206 ko:K08081 ko00960,ko01100,ko01110,map00960,map01100,map01110 - R02832 RC00144 ko00000,ko00001,ko01000 - - - adh_short_C2 SRR25158195_k127_1791612_0 391008.Smal_3597 0.0 1191.0 COG0616@1|root,COG0616@2|Bacteria,1MUXE@1224|Proteobacteria,1RNYW@1236|Gammaproteobacteria,1X31T@135614|Xanthomonadales 135614|Xanthomonadales OU signal peptide peptidase sppA - - ko:K04773 - - - - ko00000,ko01000,ko01002 - - - Peptidase_S49 SRR25158195_k127_1791612_1 522373.Smlt4191 6.475e-287 883.0 COG0534@1|root,COG0534@2|Bacteria,1MUAM@1224|Proteobacteria,1RP5M@1236|Gammaproteobacteria,1X57H@135614|Xanthomonadales 135614|Xanthomonadales V Multidrug efflux pump norM GO:0003674,GO:0005215,GO:0006810,GO:0006855,GO:0008150,GO:0015238,GO:0015893,GO:0022857,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0046677,GO:0050896,GO:0051179,GO:0051234,GO:0055085 - ko:K03327 - - - - ko00000,ko02000 2.A.66.1 - - MatE SRR25158195_k127_1791612_3 391008.Smal_3599 2.653e-86 293.0 2BTN8@1|root,32NV4@2|Bacteria,1Q6CI@1224|Proteobacteria,1RTNZ@1236|Gammaproteobacteria,1X7J2@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3106) - - - - - - - - - - - - DUF3106 SRR25158195_k127_1792221_0 522373.Smlt0899 0.0 1465.0 COG0086@1|root,COG0086@2|Bacteria,1MU3M@1224|Proteobacteria,1RPYH@1236|Gammaproteobacteria,1X3IQ@135614|Xanthomonadales 135614|Xanthomonadales K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoC GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 ko:K03046 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 SRR25158195_k127_180071_3 522373.Smlt3728 4.768e-257 794.0 COG2873@1|root,COG2873@2|Bacteria,1NQME@1224|Proteobacteria,1T1GA@1236|Gammaproteobacteria,1X3FT@135614|Xanthomonadales 135614|Xanthomonadales E O-acetylhomoserine - - 2.5.1.49 ko:K01740 ko00270,ko01100,map00270,map01100 - R01287,R04859 RC00020,RC02821,RC02848 ko00000,ko00001,ko01000 - - - Cys_Met_Meta_PP SRR25158195_k127_180071_2 522373.Smlt3726 0.0 1060.0 COG1226@1|root,COG4651@1|root,COG1226@2|Bacteria,COG4651@2|Bacteria,1MV34@1224|Proteobacteria,1RMM7@1236|Gammaproteobacteria,1X34G@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family kefB2 - - ko:K03455 - - - - ko00000 2.A.37 - - Na_H_Exchanger,TrkA_N SRR25158195_k127_180071_0 522373.Smlt3725 0.0 1506.0 COG1629@1|root,COG4771@2|Bacteria,1MUNK@1224|Proteobacteria,1RN9S@1236|Gammaproteobacteria,1X4FQ@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_180071_1 522373.Smlt3724 0.0 1241.0 COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,1RPES@1236|Gammaproteobacteria,1X2X8@135614|Xanthomonadales 135614|Xanthomonadales S abc transporter atp-binding protein yheS - - ko:K06158 - - - - ko00000,ko03012 - - - ABC_tran,ABC_tran_CTD,ABC_tran_Xtn SRR25158195_k127_180071_4 522373.Smlt3723 3.524e-57 199.0 COG0583@1|root,COG0583@2|Bacteria,1MWY0@1224|Proteobacteria,1RNPR@1236|Gammaproteobacteria,1XCR8@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - ko:K17850 ko01501,map01501 M00628 - - ko00000,ko00001,ko00002,ko03000 - - - HTH_1,LysR_substrate SRR25158195_k127_180630_1 522373.Smlt2218 1.728e-247 764.0 COG0505@1|root,COG0505@2|Bacteria,1MUB9@1224|Proteobacteria,1RMAW@1236|Gammaproteobacteria,1X3X9@135614|Xanthomonadales 135614|Xanthomonadales F Belongs to the CarA family carA GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0019627,GO:0019752,GO:0032991,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 ko:K01956 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_sm_chain,GATase SRR25158195_k127_180630_0 522373.Smlt2219 0.0 2120.0 COG0458@1|root,COG0458@2|Bacteria,1MUDZ@1224|Proteobacteria,1RPIU@1236|Gammaproteobacteria,1X3MZ@135614|Xanthomonadales 135614|Xanthomonadales F Four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate carB GO:0000050,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.5.5 ko:K01955 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_L_D2,CPSase_L_D3,MGS SRR25158195_k127_180630_3 522373.Smlt2220 8.763e-88 303.0 COG0782@1|root,COG0782@2|Bacteria,1RCXW@1224|Proteobacteria,1S3UP@1236|Gammaproteobacteria,1X5YF@135614|Xanthomonadales 135614|Xanthomonadales K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides greA - - ko:K03624 - - - - ko00000,ko03021 - - - GreA_GreB,GreA_GreB_N SRR25158195_k127_180630_2 522373.Smlt2221 1.223e-185 582.0 COG4255@1|root,COG4255@2|Bacteria,1RA9X@1224|Proteobacteria,1S23W@1236|Gammaproteobacteria,1X4E3@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria rpfE - - - - - - - - - - - - SRR25158195_k127_1809156_3 522373.Smlt4635 9.192e-78 260.0 COG0752@1|root,COG0752@2|Bacteria,1MVCJ@1224|Proteobacteria,1RMYI@1236|Gammaproteobacteria,1X31P@135614|Xanthomonadales 135614|Xanthomonadales J glycyl-tRNA synthetase alpha subunit glyQ - 6.1.1.14 ko:K01878 ko00970,map00970 M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2e SRR25158195_k127_1809156_0 522373.Smlt4634 0.0 1279.0 COG0751@1|root,COG0751@2|Bacteria,1MV2F@1224|Proteobacteria,1RNR3@1236|Gammaproteobacteria,1X31Q@135614|Xanthomonadales 135614|Xanthomonadales J Glycyl-tRNA synthetase beta subunit glyS - 6.1.1.14 ko:K01879 ko00970,map00970 M00360 R03654 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DALR_1,tRNA_synt_2f SRR25158195_k127_1809156_1 522373.Smlt4633 0.0 1219.0 COG0729@1|root,COG0729@2|Bacteria,1MUKM@1224|Proteobacteria,1RNQ3@1236|Gammaproteobacteria,1X4TX@135614|Xanthomonadales 135614|Xanthomonadales M membrane - - - ko:K07278 - - - - ko00000,ko02000 1.B.33.2.4 - - Bac_surface_Ag,POTRA,POTRA_TamA_1 SRR25158195_k127_1809156_2 522373.Smlt4632 1.237e-174 555.0 COG2911@1|root,COG2911@2|Bacteria,1MUVD@1224|Proteobacteria,1RMMF@1236|Gammaproteobacteria,1X41H@135614|Xanthomonadales 135614|Xanthomonadales S Pathogenicity protein - - - ko:K09800 - - - - ko00000,ko02000 - - - TamB SRR25158195_k127_1812593_1 522373.Smlt3333 9.447e-163 517.0 COG1600@1|root,COG1600@2|Bacteria,1MV1H@1224|Proteobacteria,1RMD9@1236|Gammaproteobacteria,1X3CD@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) queG GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 ko:K18979 - - - - ko00000,ko01000,ko03016 - - - DUF1730,Fer4_16 SRR25158195_k127_1812593_0 391008.Smal_2757 7.809e-237 740.0 COG0062@1|root,COG0063@1|root,COG0062@2|Bacteria,COG0063@2|Bacteria,1MU1Q@1224|Proteobacteria,1RMPS@1236|Gammaproteobacteria,1X3CI@135614|Xanthomonadales 135614|Xanthomonadales G Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration nnrD - 4.2.1.136,5.1.99.6 ko:K17758,ko:K17759 - - - - ko00000,ko01000 - - - Carb_kinase,YjeF_N SRR25158195_k127_1812593_2 522373.Smlt3331 1.519e-14 80.0 COG0802@1|root,COG0802@2|Bacteria,1RGYU@1224|Proteobacteria,1S6IB@1236|Gammaproteobacteria,1X6IY@135614|Xanthomonadales 135614|Xanthomonadales S ATPase or kinase - - - ko:K06925 - - - - ko00000,ko03016 - - - TsaE SRR25158195_k127_182209_2 522373.Smlt3472 7.748e-39 145.0 COG3164@1|root,COG3164@2|Bacteria,1MXWF@1224|Proteobacteria,1RNUK@1236|Gammaproteobacteria,1X37J@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - AsmA_2,DUF3971 SRR25158195_k127_182209_0 522373.Smlt3473 1.031e-309 952.0 COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,1RMIW@1236|Gammaproteobacteria,1X2ZH@135614|Xanthomonadales 135614|Xanthomonadales J Involved in the processing of the 5'end of 16S rRNA rng - - ko:K08301 - - - - ko00000,ko01000,ko03009,ko03019 - - - RNase_E_G,S1 SRR25158195_k127_182209_1 863365.XHC_1624 4.194e-66 232.0 COG0424@1|root,COG0424@2|Bacteria,1RH6H@1224|Proteobacteria,1S41D@1236|Gammaproteobacteria,1X6FV@135614|Xanthomonadales 135614|Xanthomonadales D Maf-like protein - - - ko:K06287 - - - - ko00000 - - - Maf SRR25158195_k127_182209_3 1118235.CAJH01000004_gene216 1.553e-06 52.0 COG2968@1|root,COG2968@2|Bacteria,1RH7T@1224|Proteobacteria,1RP7T@1236|Gammaproteobacteria,1X44K@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF541) - - - ko:K09807 - - - - ko00000 - - - SIMPL SRR25158195_k127_1822504_0 1429851.X548_08780 0.0 1910.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MV8W@1224|Proteobacteria,1RQEQ@1236|Gammaproteobacteria,1X5J3@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_1822504_5 1429851.X548_08775 4.213e-131 422.0 28NZ4@1|root,2ZBW3@2|Bacteria,1QU1F@1224|Proteobacteria,1S49G@1236|Gammaproteobacteria,1X3QP@135614|Xanthomonadales 135614|Xanthomonadales S SapC - - - - - - - - - - - - SapC SRR25158195_k127_1822504_4 1429851.X548_08770 1.901e-176 557.0 COG2850@1|root,COG2850@2|Bacteria,1MUAC@1224|Proteobacteria,1RQQP@1236|Gammaproteobacteria,1X5W4@135614|Xanthomonadales 135614|Xanthomonadales S Cupin-like domain - - - - - - - - - - - - Cupin_8 SRR25158195_k127_1822504_1 1429851.X548_08765 7.587e-294 908.0 COG0665@1|root,COG0665@2|Bacteria,1MU40@1224|Proteobacteria,1RMJY@1236|Gammaproteobacteria,1X3VU@135614|Xanthomonadales 135614|Xanthomonadales E Tryptophan halogenase - - 1.14.19.9 ko:K14266 ko00404,ko01130,map00404,map01130 M00789,M00790 R09570 RC00949 ko00000,ko00001,ko00002,ko01000 - - - Trp_halogenase SRR25158195_k127_1822504_3 1429851.X548_08760 6.081e-262 813.0 COG1070@1|root,COG1070@2|Bacteria,1MW4A@1224|Proteobacteria,1RR7X@1236|Gammaproteobacteria,1X4TN@135614|Xanthomonadales 135614|Xanthomonadales G Xylulose kinase xylB - 2.7.1.17 ko:K00854 ko00040,ko01100,map00040,map01100 M00014 R01639 RC00002,RC00538 ko00000,ko00001,ko00002,ko01000 - - - FGGY_C,FGGY_N SRR25158195_k127_1822504_2 1429851.X548_08755 1.375e-281 874.0 COG2115@1|root,COG2115@2|Bacteria,1MXS2@1224|Proteobacteria,1RN5Y@1236|Gammaproteobacteria,1X4B9@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the xylose isomerase family xylA GO:0003674,GO:0003824,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009045,GO:0009056,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019323,GO:0042732,GO:0042843,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575 5.3.1.5 ko:K01805 ko00040,ko00051,ko01100,map00040,map00051,map01100 - R00878,R01432 RC00376,RC00516 ko00000,ko00001,ko01000 - - - - SRR25158195_k127_1822504_6 1429851.X548_08750 3.655e-120 389.0 COG0477@1|root,COG0477@2|Bacteria,1NS3F@1224|Proteobacteria,1T1MQ@1236|Gammaproteobacteria,1X2ZE@135614|Xanthomonadales 135614|Xanthomonadales EGP Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - - - - - - - - - - Sugar_tr SRR25158195_k127_1826734_1 1429851.X548_09750 1.556e-204 638.0 COG2831@1|root,COG2831@2|Bacteria,1PRBP@1224|Proteobacteria,1RZKA@1236|Gammaproteobacteria,1X4MG@135614|Xanthomonadales 135614|Xanthomonadales U Haemolysin secretion/activation protein ShlB/FhaC/HecB - - - - - - - - - - - - POTRA_2,ShlB SRR25158195_k127_1826734_0 391008.Smal_2199 0.0 1035.0 COG0811@1|root,COG5306@1|root,COG0811@2|Bacteria,COG5306@2|Bacteria,1N2RJ@1224|Proteobacteria,1RMZK@1236|Gammaproteobacteria,1X3HR@135614|Xanthomonadales 135614|Xanthomonadales U Domain of unknown function (DUF2341) - - - ko:K03561 - - - - ko00000,ko02000 1.A.30.2.1 - - DUF2341,Laminin_G_3,MotA_ExbB SRR25158195_k127_1827164_0 522373.Smlt3167 4.299e-251 776.0 COG2902@1|root,COG2902@2|Bacteria,1MXNV@1224|Proteobacteria,1RQVZ@1236|Gammaproteobacteria,1X46R@135614|Xanthomonadales 135614|Xanthomonadales E glutamate dehydrogenase - - 1.4.1.2 ko:K15371 ko00220,ko00250,ko00430,ko00910,ko01100,map00220,map00250,map00430,map00910,map01100 - R00243 RC00006,RC02799 ko00000,ko00001,ko01000 - - - Bac_GDH,GDH_N SRR25158195_k127_1828856_3 391008.Smal_3763 6.12e-80 268.0 COG5591@1|root,COG5591@2|Bacteria,1NIHD@1224|Proteobacteria,1SVHZ@1236|Gammaproteobacteria,1X7EV@135614|Xanthomonadales 135614|Xanthomonadales S Peptidase propeptide and YPEB domain - - - - - - - - - - - - PepSY_2 SRR25158195_k127_1828856_6 1429851.X548_17595 1.303e-37 143.0 COG3212@1|root,COG3212@2|Bacteria,1NHDB@1224|Proteobacteria,1TA9T@1236|Gammaproteobacteria,1X8NE@135614|Xanthomonadales 135614|Xanthomonadales S Peptidase propeptide and YPEB domain - - - - - - - - - - - - PepSY_2 SRR25158195_k127_1828856_2 391008.Smal_3765 8.029e-125 402.0 COG0745@1|root,COG0745@2|Bacteria,1N0YI@1224|Proteobacteria,1RMWT@1236|Gammaproteobacteria,1X5X8@135614|Xanthomonadales 135614|Xanthomonadales T Transcriptional regulatory protein, C terminal - - - ko:K02483 - - - - ko00000,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_1828856_1 1429851.X548_17605 5.973e-195 620.0 COG0642@1|root,COG0642@2|Bacteria,1MX6R@1224|Proteobacteria,1RPMH@1236|Gammaproteobacteria,1X6F3@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase-like ATPases - - - - - - - - - - - - HATPase_c SRR25158195_k127_1828856_5 391008.Smal_3767 4.449e-68 232.0 2C9TE@1|root,32RPW@2|Bacteria,1N8DZ@1224|Proteobacteria,1SF18@1236|Gammaproteobacteria,1X7PH@135614|Xanthomonadales 135614|Xanthomonadales - - VL23_07270 - - - - - - - - - - - - SRR25158195_k127_1828856_0 1429851.X548_17615 0.0 1254.0 COG1166@1|root,COG1166@2|Bacteria,1MU80@1224|Proteobacteria,1RP2J@1236|Gammaproteobacteria,1X30I@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the biosynthesis of agmatine from arginine speA - 4.1.1.19 ko:K01585 ko00330,ko01100,map00330,map01100 M00133 R00566 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Orn_Arg_deC_N SRR25158195_k127_1828856_4 391008.Smal_3769 3.314e-79 267.0 COG0421@1|root,COG0421@2|Bacteria,1MVV5@1224|Proteobacteria,1RMUT@1236|Gammaproteobacteria,1X3K2@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine speE GO:0003674,GO:0003824,GO:0004766,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016740,GO:0016765,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 ko:K00797 ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100 M00034,M00133 R01920,R02869,R08359 RC00021,RC00053 ko00000,ko00001,ko00002,ko01000 - - - Spermine_synt_N,Spermine_synth SRR25158195_k127_1829042_0 522373.Smlt4113 1.5e-322 988.0 COG0056@1|root,COG0056@2|Bacteria,1MUG7@1224|Proteobacteria,1RP4V@1236|Gammaproteobacteria,1X31U@135614|Xanthomonadales 135614|Xanthomonadales C Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit atpA - 3.6.3.14 ko:K02111 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko01000 3.A.2.1 - - ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N SRR25158195_k127_1829042_2 522373.Smlt4114 5.607e-97 320.0 COG0712@1|root,COG0712@2|Bacteria,1MVRH@1224|Proteobacteria,1S8X2@1236|Gammaproteobacteria,1X6DJ@135614|Xanthomonadales 135614|Xanthomonadales C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation atpH - - ko:K02113 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - OSCP SRR25158195_k127_1829042_3 391008.Smal_3515 3.721e-83 279.0 COG0711@1|root,COG0711@2|Bacteria,1RHZ0@1224|Proteobacteria,1S402@1236|Gammaproteobacteria,1X60B@135614|Xanthomonadales 135614|Xanthomonadales C Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) atpF - - ko:K02109 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_B SRR25158195_k127_1829042_4 522373.Smlt4116 5.428e-48 173.0 COG0636@1|root,32S3K@2|Bacteria,1N1NA@1224|Proteobacteria,1S9MD@1236|Gammaproteobacteria,1X78S@135614|Xanthomonadales 135614|Xanthomonadales C F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation atpE - - ko:K02110 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194 3.A.2.1 - - ATP-synt_C SRR25158195_k127_1829042_1 522373.Smlt4117 2.541e-141 449.0 COG0356@1|root,COG0356@2|Bacteria,1MV87@1224|Proteobacteria,1RPHK@1236|Gammaproteobacteria,1X4NB@135614|Xanthomonadales 135614|Xanthomonadales C it plays a direct role in the translocation of protons across the membrane atpB - - ko:K02108 ko00190,ko00195,ko01100,map00190,map00195,map01100 M00157 - - ko00000,ko00001,ko00002,ko00194,ko03110 3.A.2.1 - - ATP-synt_A SRR25158195_k127_1832999_5 391008.Smal_3424 1.671e-96 316.0 COG0738@1|root,COG0738@2|Bacteria,1MXDC@1224|Proteobacteria,1RMQJ@1236|Gammaproteobacteria,1X3CS@135614|Xanthomonadales 135614|Xanthomonadales G Transporter gluP - - - - - - - - - - - MFS_1 SRR25158195_k127_1832999_0 391008.Smal_3423 3.616e-235 728.0 COG1609@1|root,COG1609@2|Bacteria,1MVUR@1224|Proteobacteria,1RN2K@1236|Gammaproteobacteria,1X2Z0@135614|Xanthomonadales 135614|Xanthomonadales K lacI family VL23_05370 - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 SRR25158195_k127_1832999_2 522373.Smlt4021 5.412e-204 638.0 COG2222@1|root,COG2222@2|Bacteria,1MXC7@1224|Proteobacteria,1RS53@1236|Gammaproteobacteria,1X3UH@135614|Xanthomonadales 135614|Xanthomonadales M Iron dicitrate transport regulator FecR - - 2.6.1.16 ko:K00820 ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931 - R00768 RC00010,RC00163,RC02752 ko00000,ko00001,ko01000,ko01002 - - - SIS SRR25158195_k127_1832999_1 522373.Smlt4020 1.252e-233 728.0 COG1820@1|root,COG1820@2|Bacteria,1MW8Y@1224|Proteobacteria,1RMRV@1236|Gammaproteobacteria,1X36K@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the metallo-dependent hydrolases superfamily. NagA family nagA - 3.5.1.25 ko:K01443 ko00520,ko01130,map00520,map01130 - R02059 RC00166,RC00300 ko00000,ko00001,ko01000 - - - Amidohydro_1 SRR25158195_k127_1832999_3 391008.Smal_3420 4.555e-200 631.0 COG4299@1|root,COG4299@2|Bacteria,1R5FB@1224|Proteobacteria,1S1E0@1236|Gammaproteobacteria,1X3EW@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1624) - - - - - - - - - - - - DUF1624 SRR25158195_k127_1832999_4 391008.Smal_3418 9.123e-129 420.0 COG0793@1|root,COG0793@2|Bacteria,1NZXM@1224|Proteobacteria,1SRIY@1236|Gammaproteobacteria,1XBWD@135614|Xanthomonadales 135614|Xanthomonadales M Peptidase family S41 - - - - - - - - - - - - Peptidase_S41 SRR25158195_k127_1832999_7 522373.Smlt4009 3.341e-34 131.0 2E2DR@1|root,32XIE@2|Bacteria,1N271@1224|Proteobacteria 1224|Proteobacteria S SseB protein N-terminal domain - - - - - - - - - - - - SseB SRR25158195_k127_183690_1 522373.Smlt1350 2.855e-127 408.0 COG4625@1|root,COG4625@2|Bacteria,1NH63@1224|Proteobacteria 1224|Proteobacteria S Autotransporter beta-domain - - - - - - - - - - - - Autotransporter SRR25158195_k127_183690_0 522373.Smlt1351 2.535e-168 545.0 COG1052@1|root,COG1052@2|Bacteria,1MVSS@1224|Proteobacteria,1RMWR@1236|Gammaproteobacteria,1X5V5@135614|Xanthomonadales 135614|Xanthomonadales CH D-isomer specific 2-hydroxyacid dehydrogenase ldhA - 1.1.1.28 ko:K03778 ko00620,ko01120,map00620,map01120 - R00704 RC00044 ko00000,ko00001,ko01000 - - - 2-Hacid_dh,2-Hacid_dh_C SRR25158195_k127_1838046_3 391008.Smal_3019 9.935e-185 579.0 COG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,1RP09@1236|Gammaproteobacteria,1X3XU@135614|Xanthomonadales 135614|Xanthomonadales O Cytochrome C biogenesis protein cbpA - - ko:K05516 - - - - ko00000,ko03036,ko03110 - - - DnaJ,DnaJ_C SRR25158195_k127_1838046_5 522373.Smlt3600 3.096e-96 318.0 COG0678@1|root,COG0678@2|Bacteria,1MU0H@1224|Proteobacteria,1RRFB@1236|Gammaproteobacteria,1X6E3@135614|Xanthomonadales 135614|Xanthomonadales O Peroxiredoxin - - - - - - - - - - - - Redoxin SRR25158195_k127_1838046_4 391008.Smal_3021 1.051e-104 346.0 COG2193@1|root,COG2193@2|Bacteria,1RAQ8@1224|Proteobacteria,1S2G2@1236|Gammaproteobacteria,1X60R@135614|Xanthomonadales 135614|Xanthomonadales P Bacterioferritin (cytochrome b1) - - 1.16.3.1 ko:K03594 ko00860,map00860 - R00078 RC02758 ko00000,ko00001,ko01000 - - - Ferritin SRR25158195_k127_1838046_1 391008.Smal_3022 0.0 1532.0 COG4953@1|root,COG4953@2|Bacteria,1MUA9@1224|Proteobacteria,1RMBV@1236|Gammaproteobacteria,1X4XC@135614|Xanthomonadales 135614|Xanthomonadales M penicillin-binding protein pbpC - 2.4.1.129 ko:K05367 ko00550,map00550 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - BiPBP_C,Transgly,Transpeptidase SRR25158195_k127_1838046_0 522373.Smlt3603 0.0 3201.0 COG2373@1|root,COG2373@2|Bacteria,1MV7J@1224|Proteobacteria,1RNRY@1236|Gammaproteobacteria,1X4ST@135614|Xanthomonadales 135614|Xanthomonadales S Large extracellular alpha-helical protein - - - ko:K06894 - - - - ko00000 - - - A2M,A2M_N,A2M_N_2,MG1,Thiol-ester_cl SRR25158195_k127_1838046_2 522373.Smlt3604 6.099e-307 944.0 COG2079@1|root,COG2079@2|Bacteria,1MUIG@1224|Proteobacteria,1RPQN@1236|Gammaproteobacteria,1X4TK@135614|Xanthomonadales 135614|Xanthomonadales S 2-methylcitrate dehydratase prpD - 4.2.1.79 ko:K01720 ko00640,map00640 - R04424 RC01152 ko00000,ko00001,ko01000 - - - MmgE_PrpD SRR25158195_k127_1838046_6 391008.Smal_3025 3.131e-34 131.0 COG2828@1|root,COG2828@2|Bacteria,1MXVV@1224|Proteobacteria,1RNE6@1236|Gammaproteobacteria,1X363@135614|Xanthomonadales 135614|Xanthomonadales P 3-methylitaconate isomerase prpF - - ko:K09788 ko00640,map00640 - R11264 RC03405 ko00000,ko00001,ko01000 - - - PrpF SRR25158195_k127_1838217_1 1205753.A989_16978 1.264e-83 282.0 COG3501@1|root,COG3501@2|Bacteria,1MU7Q@1224|Proteobacteria,1RMZS@1236|Gammaproteobacteria,1X542@135614|Xanthomonadales 135614|Xanthomonadales S type VI secretion system Vgr family protein - - - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - Phage_GPD SRR25158195_k127_1838217_0 522373.Smlt2223 0.0 1106.0 COG0608@1|root,COG0608@2|Bacteria,1MU1M@1224|Proteobacteria,1RMF4@1236|Gammaproteobacteria,1X3EZ@135614|Xanthomonadales 135614|Xanthomonadales L Single-stranded-DNA-specific exonuclease recJ - - ko:K07462 ko03410,ko03430,ko03440,map03410,map03430,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DHH,DHHA1 SRR25158195_k127_1838446_1 1429851.X548_12710 5.036e-211 664.0 COG3083@1|root,COG3083@2|Bacteria,1MX6X@1224|Proteobacteria,1RPAU@1236|Gammaproteobacteria,1X9Z3@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF3413) - - - ko:K07014 - - - - ko00000 - - - DUF3413,Sulfatase SRR25158195_k127_1838446_0 522373.Smlt3409 5.335e-217 673.0 COG3491@1|root,COG3491@2|Bacteria,1MUNT@1224|Proteobacteria,1RPQ8@1236|Gammaproteobacteria,1X30S@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the iron ascorbate-dependent oxidoreductase family - - - - - - - - - - - - 2OG-FeII_Oxy,DIOX_N SRR25158195_k127_1838446_2 522373.Smlt3407 2.424e-146 469.0 COG0149@1|root,COG0149@2|Bacteria,1MWK5@1224|Proteobacteria,1RM8I@1236|Gammaproteobacteria,1X3VV@135614|Xanthomonadales 135614|Xanthomonadales G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) tpiA GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 ko:K01803 ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01015 RC00423 ko00000,ko00001,ko00002,ko01000,ko04147 - - - TIM SRR25158195_k127_1838446_4 1429851.X548_12695 1.525e-72 246.0 COG1314@1|root,COG1314@2|Bacteria,1N8MF@1224|Proteobacteria,1SD3P@1236|Gammaproteobacteria,1X70B@135614|Xanthomonadales 135614|Xanthomonadales U Preprotein translocase subunit SecG secG - - ko:K03075 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - SecG SRR25158195_k127_1838446_3 244582.JQAK01000042_gene2323 1.123e-142 455.0 COG0377@1|root,COG0377@2|Bacteria,1MUI2@1224|Proteobacteria,2TQK3@28211|Alphaproteobacteria,47EZV@766|Rickettsiales 766|Rickettsiales C Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoB - 1.6.5.3,1.6.99.3 ko:K00331,ko:K03940 ko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016 M00143,M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1,3.D.1.6 - - Oxidored_q6 SRR25158195_k127_1839488_3 522373.Smlt1222 9.219e-160 503.0 COG1957@1|root,COG1957@2|Bacteria,1MUIW@1224|Proteobacteria,1S134@1236|Gammaproteobacteria,1X3AQ@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the IUNH family - - 3.2.2.1 ko:K01239 ko00230,ko00760,ko01100,map00230,map00760,map01100 - R01245,R01273,R01677,R01770,R02143 RC00033,RC00063,RC00122,RC00318,RC00485 ko00000,ko00001,ko01000 - - - IU_nuc_hydro SRR25158195_k127_1839488_1 1429851.X548_03975 5.116e-244 759.0 COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,1RNIM@1236|Gammaproteobacteria,1X4E1@135614|Xanthomonadales 135614|Xanthomonadales EGP Major facilitator superfamily - - - - - - - - - - - - MFS_1,Sugar_tr SRR25158195_k127_1839488_2 522373.Smlt1210 2.168e-200 629.0 COG1408@1|root,COG1408@2|Bacteria,1MUH5@1224|Proteobacteria,1RZ45@1236|Gammaproteobacteria,1X6Z0@135614|Xanthomonadales 135614|Xanthomonadales S Calcineurin-like phosphoesterase superfamily domain - - - ko:K07098 - - - - ko00000 - - - Metallophos SRR25158195_k127_1839488_0 522373.Smlt1209 5.243e-300 923.0 COG1253@1|root,COG1253@2|Bacteria,1QTUN@1224|Proteobacteria,1RMTY@1236|Gammaproteobacteria,1XD94@135614|Xanthomonadales 135614|Xanthomonadales P Transporter associated domain - - - - - - - - - - - - CBS,CorC_HlyC,TerC SRR25158195_k127_1839488_5 522373.Smlt1208 6.338e-37 139.0 COG3655@1|root,COG3655@2|Bacteria,1N6VH@1224|Proteobacteria,1SDAJ@1236|Gammaproteobacteria,1X8QQ@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - ko:K07727 - - - - ko00000,ko03000 - - - HTH_26 SRR25158195_k127_1839488_4 391008.Smal_1064 4.241e-65 226.0 2DHDT@1|root,2ZZC7@2|Bacteria,1NDZ8@1224|Proteobacteria,1T903@1236|Gammaproteobacteria,1XBGV@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2975) - - - - - - - - - - - - DUF2975 SRR25158195_k127_1848042_5 391008.Smal_3093 3.926e-40 158.0 COG1199@1|root,COG1199@2|Bacteria,1MVCU@1224|Proteobacteria,1RMNX@1236|Gammaproteobacteria,1X3ZE@135614|Xanthomonadales 135614|Xanthomonadales KL Helicase yoaA - 3.6.4.12 ko:K03722 - - - - ko00000,ko01000,ko03400 - - - DEAD,Helicase_C_2,ResIII SRR25158195_k127_1848042_3 1429851.X548_14145 8.501e-83 281.0 COG0457@1|root,COG0457@2|Bacteria,1N3T7@1224|Proteobacteria,1T1KY@1236|Gammaproteobacteria,1X6RJ@135614|Xanthomonadales 135614|Xanthomonadales S Tetratricopeptide repeat - - - - - - - - - - - - - SRR25158195_k127_1848042_0 391008.Smal_3095 0.0 1547.0 COG0744@1|root,COG0744@2|Bacteria,1QTST@1224|Proteobacteria,1RNHV@1236|Gammaproteobacteria,1X479@135614|Xanthomonadales 135614|Xanthomonadales M Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) mrcB - 2.4.1.129,3.4.16.4 ko:K05365 ko00550,map00550 - R04519 RC00005,RC00049 ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - Transgly,Transpeptidase,UB2H SRR25158195_k127_1848042_2 743721.Psesu_0540 4.6e-101 339.0 COG1216@1|root,COG1216@2|Bacteria,1QTEK@1224|Proteobacteria,1S5EC@1236|Gammaproteobacteria,1X6B6@135614|Xanthomonadales 135614|Xanthomonadales S PFAM Glycosyl transferase family 2 - - - ko:K12990 ko02024,ko02025,map02024,map02025 - - - ko00000,ko00001,ko01000,ko01003,ko01005 - GT2 - Glycos_transf_2 SRR25158195_k127_1848042_4 84531.JMTZ01000050_gene898 8.835e-83 293.0 COG1216@1|root,COG1216@2|Bacteria,1QVRU@1224|Proteobacteria,1T2IB@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Glycosyltransferase like family 2 - - - - - - - - - - - - Glycos_transf_2 SRR25158195_k127_1848042_1 391008.Smal_3098 1.02e-182 578.0 COG4783@1|root,COG4783@2|Bacteria,1QU1C@1224|Proteobacteria,1S9U6@1236|Gammaproteobacteria,1X4QZ@135614|Xanthomonadales 135614|Xanthomonadales S chaperone-mediated protein folding - - - - - - - - - - - - - SRR25158195_k127_1851881_3 1385515.N791_08735 6.654e-44 166.0 COG4726@1|root,COG4726@2|Bacteria,1N3W8@1224|Proteobacteria,1SEEK@1236|Gammaproteobacteria,1X91Y@135614|Xanthomonadales 135614|Xanthomonadales NU PilX N-terminal - - - ko:K02673 - - - - ko00000,ko02035,ko02044 - - - PilX_N SRR25158195_k127_1851881_0 1385515.N791_08730 0.0 1192.0 COG3419@1|root,COG3419@2|Bacteria,1NUAV@1224|Proteobacteria,1RPV3@1236|Gammaproteobacteria,1X5NA@135614|Xanthomonadales 135614|Xanthomonadales NU Neisseria PilC beta-propeller domain - - - - - - - - - - - - Neisseria_PilC SRR25158195_k127_1851881_2 1385515.N791_08725 5.208e-80 305.0 COG3419@1|root,COG3419@2|Bacteria,1NUAV@1224|Proteobacteria,1RPV3@1236|Gammaproteobacteria,1X3K8@135614|Xanthomonadales 135614|Xanthomonadales NU Tfp pilus assembly protein, tip-associated adhesin PilY1 pilY1 - - ko:K02674 - - - - ko00000,ko02035,ko02044 - - - Neisseria_PilC SRR25158195_k127_1851881_4 366649.XFF4834R_chr26620 8.485e-32 135.0 COG4968@1|root,COG4968@2|Bacteria,1N6QE@1224|Proteobacteria,1SCBS@1236|Gammaproteobacteria,1X8A4@135614|Xanthomonadales 135614|Xanthomonadales NU Type IV minor pilin ComP, DNA uptake sequence receptor - - - ko:K02655 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - ComP_DUS,N_methyl SRR25158195_k127_1851881_5 190486.XAC2626 6.732e-16 85.0 COG4970@1|root,COG4970@2|Bacteria,1Q92Z@1224|Proteobacteria,1SEPV@1236|Gammaproteobacteria,1X7Z2@135614|Xanthomonadales 135614|Xanthomonadales NU COG4970 Tfp pilus assembly protein FimT - - - ko:K08084 - - - - ko00000,ko02044 3.A.15.2 - - GspH,N_methyl SRR25158195_k127_1851881_1 1429851.X548_05680 5.418e-178 565.0 COG0556@1|root,COG0556@2|Bacteria,1MUFK@1224|Proteobacteria,1RN6Z@1236|Gammaproteobacteria,1X4EZ@135614|Xanthomonadales 135614|Xanthomonadales L damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage uvrB - - ko:K03702 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - Helicase_C,ResIII,UVR,UvrB SRR25158195_k127_1860070_3 522373.Smlt0088 7.656e-22 96.0 COG1398@1|root,COG1398@2|Bacteria,1N2MA@1224|Proteobacteria,1RSN1@1236|Gammaproteobacteria,1X377@135614|Xanthomonadales 135614|Xanthomonadales I desaturase - - 1.14.19.1 ko:K00507 ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212 - R02222 RC00917 ko00000,ko00001,ko01000,ko01004 - - - DDE_Tnp_ISL3,FA_desaturase SRR25158195_k127_1860070_2 391008.Smal_0041 9.028e-154 492.0 COG1119@1|root,COG1119@2|Bacteria,1MVVM@1224|Proteobacteria,1RMXK@1236|Gammaproteobacteria,1X5VK@135614|Xanthomonadales 135614|Xanthomonadales P abc transporter atp-binding protein ylmA - 3.6.3.34 ko:K02013 ko02010,map02010 M00240 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.14 - - ABC_tran SRR25158195_k127_1860070_0 1429851.X548_19380 7.132e-196 632.0 2CEJ2@1|root,32T40@2|Bacteria,1N46C@1224|Proteobacteria,1SATU@1236|Gammaproteobacteria,1X6N7@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4785) - - - - - - - - - - - - DUF4785 SRR25158195_k127_1860070_1 522373.Smlt0085 2.179e-179 564.0 COG1075@1|root,COG1075@2|Bacteria,1P9JY@1224|Proteobacteria,1RYH4@1236|Gammaproteobacteria,1X4KM@135614|Xanthomonadales 135614|Xanthomonadales S acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - - - - - - - - - - - SRR25158195_k127_186243_2 522373.Smlt4243 1.026e-150 478.0 2A4A3@1|root,30SVK@2|Bacteria,1PCCM@1224|Proteobacteria,1SXAU@1236|Gammaproteobacteria,1X61B@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_186243_8 391008.Smal_3650 6.063e-70 239.0 2C307@1|root,303NC@2|Bacteria,1QQSV@1224|Proteobacteria,1RTGF@1236|Gammaproteobacteria,1X7G0@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_186243_1 522373.Smlt4241 3.015e-295 906.0 COG0439@1|root,COG0439@2|Bacteria,1MU4H@1224|Proteobacteria,1RMNB@1236|Gammaproteobacteria,1X43Q@135614|Xanthomonadales 135614|Xanthomonadales I An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism accC - 6.3.4.14,6.4.1.2 ko:K01961 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04385 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Biotin_carb_C,Biotin_carb_N,CPSase_L_D2 SRR25158195_k127_186243_6 522373.Smlt4240 1.579e-91 302.0 COG0511@1|root,COG0511@2|Bacteria,1RCXA@1224|Proteobacteria,1S3YP@1236|Gammaproteobacteria,1X67R@135614|Xanthomonadales 135614|Xanthomonadales I first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA accB - - ko:K02160 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742 RC00040,RC00367 ko00000,ko00001,ko00002 - - - Biotin_lipoyl SRR25158195_k127_186243_7 522373.Smlt4239 2.67e-83 278.0 COG0757@1|root,COG0757@2|Bacteria,1RDDT@1224|Proteobacteria,1S3PX@1236|Gammaproteobacteria,1X6EW@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes a trans-dehydration via an enolate intermediate aroQ - 4.2.1.10 ko:K03786 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03084 RC00848 ko00000,ko00001,ko00002,ko01000 - - - DHquinase_II SRR25158195_k127_186243_4 391008.Smal_3645 5.177e-115 388.0 COG3805@1|root,COG3805@2|Bacteria,1N2DN@1224|Proteobacteria,1SA51@1236|Gammaproteobacteria,1X8ZE@135614|Xanthomonadales 135614|Xanthomonadales Q Dopa 4,5-dioxygenase family - - - ko:K10253 - - - - ko00000,ko01000 - - - DOPA_dioxygen SRR25158195_k127_186243_3 391008.Smal_3644 6.668e-144 460.0 COG2513@1|root,COG2513@2|Bacteria,1R3SD@1224|Proteobacteria,1S2C1@1236|Gammaproteobacteria,1X6CP@135614|Xanthomonadales 135614|Xanthomonadales G Phosphoenolpyruvate phosphomutase - - - - - - - - - - - - PEP_mutase SRR25158195_k127_186243_0 1118235.CAJH01000039_gene2514 0.0 1224.0 COG1629@1|root,COG4771@2|Bacteria,1MUC1@1224|Proteobacteria,1RNHR@1236|Gammaproteobacteria,1X9BP@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane protein beta-barrel family - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_186243_5 1429851.X548_16960 6.661e-97 319.0 COG2249@1|root,COG2249@2|Bacteria,1MUHN@1224|Proteobacteria,1S24D@1236|Gammaproteobacteria,1XA9B@135614|Xanthomonadales 135614|Xanthomonadales S Flavodoxin-like fold - - 1.6.5.2 ko:K00355 ko00130,ko01110,ko05200,ko05225,ko05418,map00130,map01110,map05200,map05225,map05418 - R02964,R03643,R03816 RC00819 ko00000,ko00001,ko01000 - - - Flavodoxin_2 SRR25158195_k127_186243_9 522373.Smlt4234 1.552e-08 59.0 COG1309@1|root,COG1309@2|Bacteria,1RA5N@1224|Proteobacteria,1RZ0Q@1236|Gammaproteobacteria,1X8G2@135614|Xanthomonadales 135614|Xanthomonadales K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N SRR25158195_k127_1867668_2 391008.Smal_1079 1.001e-34 136.0 COG4799@1|root,COG4799@2|Bacteria,1PRAH@1224|Proteobacteria,1RNT2@1236|Gammaproteobacteria,1X3T6@135614|Xanthomonadales 135614|Xanthomonadales I Malonate decarboxylase mdcD - 4.1.1.87 ko:K13932 - - - - ko00000,ko01000 - - - Carboxyl_trans SRR25158195_k127_1867668_1 522373.Smlt1231 4.328e-52 186.0 COG3052@1|root,COG3052@2|Bacteria,1N71C@1224|Proteobacteria,1S5W7@1236|Gammaproteobacteria,1X930@135614|Xanthomonadales 135614|Xanthomonadales C Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism mdcC - - ko:K13931 - - - - ko00000,ko02000 3.B.1.1.4 - - ACP SRR25158195_k127_1867668_0 522373.Smlt1232 0.0 1075.0 COG4670@1|root,COG4670@2|Bacteria,1MX9F@1224|Proteobacteria,1RMW2@1236|Gammaproteobacteria,1X4X7@135614|Xanthomonadales 135614|Xanthomonadales I Malonate decarboxylase mdcA - 2.3.1.187 ko:K13929 - - R08944 RC00012,RC00014 ko00000,ko01000,ko02000 3.B.1.1.4 - - Mal_decarbox_Al SRR25158195_k127_1877326_0 391937.NA2_17479 2.914e-311 961.0 COG1653@1|root,COG1653@2|Bacteria,1MV8A@1224|Proteobacteria,2TTPV@28211|Alphaproteobacteria,43HDP@69277|Phyllobacteriaceae 28211|Alphaproteobacteria G Extracellular solute-binding protein MA20_44770 - - ko:K17321 ko02010,map02010 M00607 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1.35 - - SBP_bac_1,SBP_bac_8 SRR25158195_k127_1882590_0 522373.Smlt1831 0.0 1782.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X34J@135614|Xanthomonadales 135614|Xanthomonadales V Efflux pump membrane transporter - - - ko:K19585 - M00767 - - ko00000,ko00002,ko02000 2.A.6.2.47 - - ACR_tran SRR25158195_k127_1882590_1 391008.Smal_1567 7.848e-226 702.0 COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,1RMI7@1236|Gammaproteobacteria,1X38S@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K18298,ko:K19586 - M00641,M00767 - - ko00000,ko00002,ko01504,ko02000 2.A.6.2.47,8.A.1 - - Biotin_lipoyl_2,HlyD_D23 SRR25158195_k127_1885583_0 391008.Smal_1301 5e-324 993.0 COG2199@1|root,COG3292@1|root,COG3292@2|Bacteria,COG3706@2|Bacteria,1R9NB@1224|Proteobacteria,1S1MC@1236|Gammaproteobacteria,1XCAK@135614|Xanthomonadales 135614|Xanthomonadales T Two component regulator propeller - - - - - - - - - - - - GGDEF,Reg_prop,Y_Y_Y SRR25158195_k127_1885583_1 522373.Smlt1543 3.936e-131 419.0 COG0847@1|root,COG0847@2|Bacteria,1MUPK@1224|Proteobacteria,1RMMH@1236|Gammaproteobacteria,1X4KC@135614|Xanthomonadales 135614|Xanthomonadales L Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis rnt GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0031123,GO:0034470,GO:0034641,GO:0034660,GO:0042780,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360 - ko:K03683 - - - - ko00000,ko01000,ko03016 - - - RNase_T SRR25158195_k127_1890128_4 391008.Smal_1125 1.001e-194 607.0 COG0060@1|root,COG0060@2|Bacteria,1MVBQ@1224|Proteobacteria,1RMTF@1236|Gammaproteobacteria,1X47W@135614|Xanthomonadales 135614|Xanthomonadales J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) ileS - 6.1.1.5 ko:K01870 ko00970,map00970 M00359,M00360 R03656 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1,zf-FPG_IleRS SRR25158195_k127_1890128_3 391008.Smal_1124 3.991e-197 616.0 COG0196@1|root,COG0196@2|Bacteria,1MV9I@1224|Proteobacteria,1RN44@1236|Gammaproteobacteria,1X3EA@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the ribF family ribF - 2.7.1.26,2.7.7.2 ko:K11753 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00161,R00549 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - FAD_syn,Flavokinase SRR25158195_k127_1890128_1 1429851.X548_04265 3.29e-317 974.0 COG0728@1|root,COG0728@2|Bacteria,1MUH0@1224|Proteobacteria,1RMXX@1236|Gammaproteobacteria,1X3WW@135614|Xanthomonadales 135614|Xanthomonadales S Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane murJ - - ko:K03980 - - - - ko00000,ko01011,ko02000 2.A.66.4 - - MVIN SRR25158195_k127_1890128_7 522373.Smlt1337 2.813e-43 159.0 COG0268@1|root,COG0268@2|Bacteria,1MZ94@1224|Proteobacteria,1S9AI@1236|Gammaproteobacteria,1X7IW@135614|Xanthomonadales 135614|Xanthomonadales J Binds directly to 16S ribosomal RNA rpsT - - ko:K02968 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S20p SRR25158195_k127_1890128_2 522373.Smlt1280 1.26e-223 695.0 COG0536@1|root,COG0536@2|Bacteria,1MUGZ@1224|Proteobacteria,1RMFQ@1236|Gammaproteobacteria,1X3H0@135614|Xanthomonadales 135614|Xanthomonadales S An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control obgE - - ko:K03979 - - - - ko00000,ko01000,ko03009 - - - GTP1_OBG,MMR_HSR1 SRR25158195_k127_1890128_6 391008.Smal_1120 9.683e-49 174.0 COG0211@1|root,COG0211@2|Bacteria,1MZGH@1224|Proteobacteria,1S8R2@1236|Gammaproteobacteria,1X7K6@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the bacterial ribosomal protein bL27 family rpmA GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02899 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L27 SRR25158195_k127_1890128_5 522373.Smlt1278 2.332e-57 201.0 COG0261@1|root,COG0261@2|Bacteria,1MZEW@1224|Proteobacteria,1S5VB@1236|Gammaproteobacteria,1X6XJ@135614|Xanthomonadales 135614|Xanthomonadales J This protein binds to 23S rRNA in the presence of protein L20 rplU GO:0003674,GO:0003735,GO:0005198 - ko:K02888 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L21p SRR25158195_k127_1890128_0 522373.Smlt1277 0.0 1649.0 COG0178@1|root,COG0178@2|Bacteria,1MW0W@1224|Proteobacteria,1RMS9@1236|Gammaproteobacteria,1X45Q@135614|Xanthomonadales 135614|Xanthomonadales L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate uvrA - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - ABC_tran SRR25158195_k127_1891053_3 234267.Acid_1824 5.418e-05 46.0 COG0577@1|root,COG0577@2|Bacteria 2|Bacteria V efflux transmembrane transporter activity - - - - - - - - - - - - FtsX,MacB_PCD SRR25158195_k127_1891053_1 215803.DB30_8371 2.61e-103 340.0 COG1136@1|root,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,4345D@68525|delta/epsilon subdivisions,2X4AB@28221|Deltaproteobacteria,2YYKZ@29|Myxococcales 28221|Deltaproteobacteria V ABC transporter - - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran SRR25158195_k127_1891053_0 1278073.MYSTI_07743 1.393e-128 425.0 COG0845@1|root,COG0845@2|Bacteria,1R50D@1224|Proteobacteria,438S0@68525|delta/epsilon subdivisions,2X3YT@28221|Deltaproteobacteria,2YXMR@29|Myxococcales 28221|Deltaproteobacteria M Biotin-lipoyl like - - - - - - - - - - - - Biotin_lipoyl_2,HlyD_3 SRR25158195_k127_1891053_2 1123261.AXDW01000007_gene2279 9.957e-23 103.0 COG1595@1|root,COG1595@2|Bacteria,1RI1M@1224|Proteobacteria,1S780@1236|Gammaproteobacteria,1X678@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_1902141_1 1429851.X548_04835 6.298e-83 276.0 COG0654@1|root,COG0654@2|Bacteria,1MU6I@1224|Proteobacteria,1RND5@1236|Gammaproteobacteria,1X55K@135614|Xanthomonadales 135614|Xanthomonadales CH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - - - - - - - - - - FAD_binding_3 SRR25158195_k127_1902141_2 522373.Smlt1460 2.951e-37 143.0 COG2501@1|root,COG2501@2|Bacteria,1N7NW@1224|Proteobacteria,1SCJU@1236|Gammaproteobacteria,1X879@135614|Xanthomonadales 135614|Xanthomonadales S RNA-binding protein - - - ko:K14761 - - - - ko00000,ko03009 - - - S4_2 SRR25158195_k127_1902141_0 522373.Smlt1461 0.0 1180.0 COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,1RMWA@1236|Gammaproteobacteria,1X334@135614|Xanthomonadales 135614|Xanthomonadales JKL DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation deaD - 3.6.4.13 ko:K05592 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03009,ko03019 - - - DEAD,DbpA,Helicase_C SRR25158195_k127_1908373_0 522373.Smlt3931 3.299e-188 587.0 COG1560@1|root,COG1560@2|Bacteria,1MVNI@1224|Proteobacteria,1RMZ5@1236|Gammaproteobacteria,1X3W9@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (lauroyl)-lipid IV(A) lpxL - 2.3.1.241 ko:K02517 ko00540,ko01100,map00540,map01100 M00060 R05146 RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Lip_A_acyltrans SRR25158195_k127_1908373_1 391008.Smal_3347 1.419e-160 508.0 COG3307@1|root,COG3307@2|Bacteria,1MYYP@1224|Proteobacteria,1T07R@1236|Gammaproteobacteria,1XCZ6@135614|Xanthomonadales 135614|Xanthomonadales M COG3307 Lipid A core - O-antigen ligase and related enzymes - - - - - - - - - - - - Wzy_C SRR25158195_k127_1908990_3 522373.Smlt3991 7.234e-91 301.0 COG0491@1|root,COG0491@2|Bacteria,1MY6G@1224|Proteobacteria,1RRBB@1236|Gammaproteobacteria,1X52I@135614|Xanthomonadales 135614|Xanthomonadales S Metallo-beta-lactamase superfamily mpd - - - - - - - - - - - Lactamase_B SRR25158195_k127_1908990_1 391008.Smal_3400 3.384e-152 496.0 COG2207@1|root,COG2207@2|Bacteria,1R71R@1224|Proteobacteria,1SA2X@1236|Gammaproteobacteria,1X5TY@135614|Xanthomonadales 135614|Xanthomonadales K helix_turn_helix, arabinose operon control protein ybcM - - - - - - - - - - - HTH_18 SRR25158195_k127_1908990_2 391008.Smal_3399 6.254e-118 384.0 COG1814@1|root,COG1814@2|Bacteria,1MUZE@1224|Proteobacteria,1S2G7@1236|Gammaproteobacteria,1X4D2@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - VIT1 SRR25158195_k127_1908990_0 59538.XP_005976798.1 8.315e-240 750.0 COG3572@1|root,2QVEN@2759|Eukaryota 2759|Eukaryota H glutamate-cysteine ligase activity - - 6.3.2.2 ko:K01919 ko00270,ko00480,ko01100,map00270,map00480,map01100 M00118 R00894,R10993 RC00064,RC00090 ko00000,ko00001,ko00002,ko01000 - - - GCS2 SRR25158195_k127_1910917_0 1429851.X548_17565 0.0 1245.0 COG3264@1|root,COG3264@2|Bacteria,1MWSA@1224|Proteobacteria,1RMYY@1236|Gammaproteobacteria,1X4H3@135614|Xanthomonadales 135614|Xanthomonadales M Small-conductance mechanosensitive channel mscK - - ko:K05802 - - - - ko00000,ko02000 1.A.23.1.1 - - DUF3772,MS_channel SRR25158195_k127_1922246_3 1429851.X548_19600 1.005e-155 492.0 COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,1RN5G@1236|Gammaproteobacteria,1X44D@135614|Xanthomonadales 135614|Xanthomonadales S ATPase family associated with various cellular activities (AAA) - - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 SRR25158195_k127_1922246_2 522373.Smlt0128 5.25e-159 504.0 COG1657@1|root,COG1657@2|Bacteria,1R3VV@1224|Proteobacteria,1S0Z2@1236|Gammaproteobacteria,1X3JP@135614|Xanthomonadales 135614|Xanthomonadales I Domain of unknown function (DUF4159) - - - - - - - - - - - - DUF4159 SRR25158195_k127_1922246_0 1429851.X548_19610 3.45e-285 877.0 COG0312@1|root,COG0312@2|Bacteria,1QM7I@1224|Proteobacteria,1S060@1236|Gammaproteobacteria,1X37P@135614|Xanthomonadales 135614|Xanthomonadales S Putative modulator of DNA gyrase - - - - - - - - - - - - PmbA_TldD SRR25158195_k127_1922246_1 522373.Smlt0130 2.777e-189 591.0 COG0312@1|root,COG0312@2|Bacteria,1NSH6@1224|Proteobacteria,1RR3H@1236|Gammaproteobacteria,1XCX9@135614|Xanthomonadales 135614|Xanthomonadales S Putative modulator of DNA gyrase - - - ko:K03568 - - - - ko00000,ko01002 - - - PmbA_TldD SRR25158195_k127_1924725_0 522373.Smlt3826 0.0 1362.0 COG5009@1|root,COG5009@2|Bacteria,1MU5A@1224|Proteobacteria,1RM7J@1236|Gammaproteobacteria,1X2XN@135614|Xanthomonadales 135614|Xanthomonadales M penicillin-binding protein mrcA - 2.4.1.129,3.4.16.4 ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - PCB_OB,Transgly,Transpeptidase SRR25158195_k127_1924725_1 391008.Smal_3242 3.897e-119 385.0 COG1418@1|root,COG1418@2|Bacteria,1RH6M@1224|Proteobacteria,1S2H2@1236|Gammaproteobacteria,1XD9X@135614|Xanthomonadales 135614|Xanthomonadales S mRNA catabolic process - - - - - - - - - - - - - SRR25158195_k127_1924725_2 1429851.X548_14895 3.124e-69 240.0 COG5295@1|root,COG5295@2|Bacteria,1N338@1224|Proteobacteria,1RPXV@1236|Gammaproteobacteria,1XCA3@135614|Xanthomonadales 135614|Xanthomonadales UW Coiled stalk of trimeric autotransporter adhesin - - - - - - - - - - - - ESPR,YadA_anchor,YadA_head,YadA_stalk SRR25158195_k127_1925444_1 391008.Smal_1613 5.003e-316 970.0 COG4992@1|root,COG4992@2|Bacteria,1MV3C@1224|Proteobacteria,1RMV1@1236|Gammaproteobacteria,1X4AB@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family argD - - - - - - - - - - - Aminotran_3 SRR25158195_k127_1925444_3 522373.Smlt2008 1.648e-223 695.0 COG0809@1|root,COG0809@2|Bacteria,1MUH3@1224|Proteobacteria,1RMKW@1236|Gammaproteobacteria,1X3J5@135614|Xanthomonadales 135614|Xanthomonadales J Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) queA GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 ko:K07568 - - - - ko00000,ko01000,ko03016 - - - Queuosine_synth SRR25158195_k127_1925444_2 522373.Smlt2009 2.558e-252 778.0 COG0343@1|root,COG0343@2|Bacteria,1MUCA@1224|Proteobacteria,1RMY3@1236|Gammaproteobacteria,1X46Q@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) tgt GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 ko:K00773 - - R03789,R10209 RC00063 ko00000,ko01000,ko03016 - - - TGT SRR25158195_k127_1925444_5 522373.Smlt2010 4.022e-64 222.0 COG1862@1|root,COG1862@2|Bacteria,1MZT2@1224|Proteobacteria,1S9NV@1236|Gammaproteobacteria,1X7J1@135614|Xanthomonadales 135614|Xanthomonadales U Preprotein translocase subunit YajC yajC - - ko:K03210 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - YajC SRR25158195_k127_1925444_0 391008.Smal_1617 0.0 1148.0 COG0342@1|root,COG0342@2|Bacteria,1MV5U@1224|Proteobacteria,1RMIQ@1236|Gammaproteobacteria,1X2XH@135614|Xanthomonadales 135614|Xanthomonadales U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secD - - ko:K03072 ko03060,ko03070,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD-TM1,SecD_SecF,Sec_GG SRR25158195_k127_1925444_4 522373.Smlt2012 1.21e-189 594.0 COG0341@1|root,COG0341@2|Bacteria,1MU74@1224|Proteobacteria,1RNTY@1236|Gammaproteobacteria,1X3H6@135614|Xanthomonadales 135614|Xanthomonadales U Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA secF - - ko:K03074 ko03060,ko03070,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG SRR25158195_k127_1926283_0 391008.Smal_1737 0.0 1596.0 COG0642@1|root,COG0745@1|root,COG2199@1|root,COG2203@1|root,COG0745@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,COG3706@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1X50H@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,Response_reg SRR25158195_k127_1926283_1 522373.Smlt2142 1.132e-166 526.0 COG1352@1|root,COG1352@2|Bacteria,1NQTI@1224|Proteobacteria,1RS9Z@1236|Gammaproteobacteria,1X3G6@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis cheR1 - 2.1.1.80 ko:K00575 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko01000,ko02035 - - - CheR,CheR_N SRR25158195_k127_1926283_3 391008.Smal_1739 2.121e-91 308.0 COG2201@1|root,COG2201@2|Bacteria,1RCWE@1224|Proteobacteria,1S6II@1236|Gammaproteobacteria,1X6PE@135614|Xanthomonadales 135614|Xanthomonadales NT Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain - - 3.1.1.61,3.5.1.44 ko:K03412 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035 - - - CheB_methylest SRR25158195_k127_1926283_2 391008.Smal_1740 3.411e-145 463.0 COG0642@1|root,COG2199@1|root,COG2205@2|Bacteria,COG3706@2|Bacteria,1NRP8@1224|Proteobacteria,1RZRU@1236|Gammaproteobacteria,1X3NK@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,Response_reg SRR25158195_k127_1926529_1 522373.Smlt3959 6.264e-130 419.0 COG2265@1|root,COG2265@2|Bacteria,1RA3I@1224|Proteobacteria,1SVQT@1236|Gammaproteobacteria,1X67Q@135614|Xanthomonadales 135614|Xanthomonadales J Methyltransferase domain - - - - - - - - - - - - Methyltransf_12,Methyltransf_25,Methyltransf_31 SRR25158195_k127_1926529_3 1429851.X548_15485 8.75e-106 345.0 COG2755@1|root,COG2755@2|Bacteria,1RE1B@1224|Proteobacteria,1S3DM@1236|Gammaproteobacteria,1X613@135614|Xanthomonadales 135614|Xanthomonadales E Lysophospholipase L1 and related esterases - - - - - - - - - - - - Lipase_GDSL_2 SRR25158195_k127_1926529_0 391008.Smal_3366 4.665e-272 842.0 COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,1RN5B@1236|Gammaproteobacteria,1X32P@135614|Xanthomonadales 135614|Xanthomonadales E aminotransferase - - 2.6.1.2,2.6.1.66 ko:K14260 ko00220,ko00250,ko00290,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00290,map01100,map01110,map01130,map01210,map01230 - R00258,R01215 RC00006,RC00008,RC00036 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 SRR25158195_k127_1926529_2 391008.Smal_3365 4.511e-128 411.0 COG1162@1|root,COG1162@2|Bacteria,1MUEF@1224|Proteobacteria,1RMMB@1236|Gammaproteobacteria,1X2Y7@135614|Xanthomonadales 135614|Xanthomonadales S One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit rsgA - 3.1.3.100 ko:K06949 ko00730,ko01100,map00730,map01100 - R00615,R02135 RC00002,RC00017 ko00000,ko00001,ko01000,ko03009 - - - RsgA_GTPase SRR25158195_k127_1928133_3 522373.Smlt1377 1.013e-72 246.0 COG0335@1|root,COG0335@2|Bacteria,1RH3A@1224|Proteobacteria,1S5XX@1236|Gammaproteobacteria,1X6EN@135614|Xanthomonadales 135614|Xanthomonadales J This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site rplS GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02884 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L19 SRR25158195_k127_1928133_4 522373.Smlt1378 6.207e-53 188.0 2EMI0@1|root,33F6M@2|Bacteria,1NIN5@1224|Proteobacteria,1T10C@1236|Gammaproteobacteria,1X8QM@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1928133_1 522373.Smlt1379 2.543e-78 263.0 COG5649@1|root,COG5649@2|Bacteria,1RDDG@1224|Proteobacteria,1TA9J@1236|Gammaproteobacteria,1X8NA@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DU1801) - - - - - - - - - - - - DUF1801 SRR25158195_k127_1928133_2 522373.Smlt1380 2.035e-73 250.0 COG5649@1|root,COG5649@2|Bacteria,1RGY3@1224|Proteobacteria,1SP5H@1236|Gammaproteobacteria,1X79K@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DU1801) - - - - - - - - - - - - DUF1801 SRR25158195_k127_1928133_0 1429851.X548_04485 2.933e-279 861.0 COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,1RRDQ@1236|Gammaproteobacteria,1X3ZH@135614|Xanthomonadales 135614|Xanthomonadales V Na -driven multidrug efflux pump - - - - - - - - - - - - MatE SRR25158195_k127_1936767_0 522373.Smlt3509 5.428e-229 712.0 COG0443@1|root,COG0443@2|Bacteria,1MXBT@1224|Proteobacteria,1RN4U@1236|Gammaproteobacteria,1X5C7@135614|Xanthomonadales 135614|Xanthomonadales O Heat shock protein yegD - - ko:K04046 - - - - ko00000,ko03110 1.A.33 - - HSP70 SRR25158195_k127_1936767_4 522373.Smlt3510 6.64e-79 265.0 COG0727@1|root,COG0727@2|Bacteria,1MZPF@1224|Proteobacteria,1S8T7@1236|Gammaproteobacteria,1X8BH@135614|Xanthomonadales 135614|Xanthomonadales S Putative zinc- or iron-chelating domain - - - - - - - - - - - - CxxCxxCC SRR25158195_k127_1936767_1 522373.Smlt3512 2.109e-160 518.0 COG3595@1|root,COG3595@2|Bacteria,1P19T@1224|Proteobacteria,1RRSR@1236|Gammaproteobacteria,1X62K@135614|Xanthomonadales 135614|Xanthomonadales S Putative adhesin - - - - - - - - - - - - DUF4097 SRR25158195_k127_1936767_5 1429851.X548_13340 2.635e-73 254.0 2CKCT@1|root,32SC5@2|Bacteria,1N1BJ@1224|Proteobacteria,1TA87@1236|Gammaproteobacteria,1X8KW@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1936767_3 391008.Smal_2942 1.21e-111 372.0 COG1595@1|root,COG1595@2|Bacteria,1R7KF@1224|Proteobacteria,1S2IU@1236|Gammaproteobacteria,1XC71@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_1936767_2 1429851.X548_13355 8.961e-112 385.0 COG0668@1|root,COG0668@2|Bacteria,1RCM8@1224|Proteobacteria,1SCM2@1236|Gammaproteobacteria,1X63J@135614|Xanthomonadales 135614|Xanthomonadales M mechanosensitive ion channel - - - - - - - - - - - - MS_channel SRR25158195_k127_1936767_8 522373.Smlt3517 2.219e-15 75.0 COG1734@1|root,COG1734@2|Bacteria,1MZIB@1224|Proteobacteria,1S8SP@1236|Gammaproteobacteria,1X7H8@135614|Xanthomonadales 135614|Xanthomonadales T TIGRFAM phage conjugal plasmid C-4 type zinc finger protein, TraR family - - - - - - - - - - - - zf-dskA_traR SRR25158195_k127_1942416_0 391008.Smal_1346 1.879e-233 724.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X4MT@135614|Xanthomonadales 135614|Xanthomonadales C In Escherichia coli this enzyme appears to be an NAD NADP -dependent succinate semialdehyde dehydrogenase gabD - 1.2.1.16,1.2.1.20,1.2.1.24,1.2.1.79 ko:K00135,ko:K08324 ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120 M00027 R00713,R00714,R02401 RC00080 ko00000,ko00001,ko00002,ko01000 - - - Aldedh SRR25158195_k127_1942416_2 1429851.X548_05475 1.803e-164 522.0 COG1177@1|root,COG1177@2|Bacteria,1MVC5@1224|Proteobacteria,1RQB7@1236|Gammaproteobacteria,1X4HR@135614|Xanthomonadales 135614|Xanthomonadales E Spermidine putrescine ABC transporter permease potI - - ko:K11074 ko02010,map02010 M00300 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.2 - - BPD_transp_1 SRR25158195_k127_1942416_1 391008.Smal_1344 4.297e-193 603.0 COG1176@1|root,COG1176@2|Bacteria,1MVGM@1224|Proteobacteria,1RNNZ@1236|Gammaproteobacteria,1X4Y3@135614|Xanthomonadales 135614|Xanthomonadales E ABC-type spermidine putrescine transport system, permease component I potH - - ko:K11075 ko02010,map02010 M00300 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.2 - - BPD_transp_1 SRR25158195_k127_1942416_3 522373.Smlt1584 1.706e-159 502.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,1RNPX@1236|Gammaproteobacteria,1X37D@135614|Xanthomonadales 135614|Xanthomonadales P Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system potA - - ko:K11076 ko02010,map02010 M00300 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.2 - - ABC_tran,TOBE_2 SRR25158195_k127_1944564_3 391008.Smal_0980 4.554e-89 294.0 COG1376@1|root,COG1376@2|Bacteria,1Q823@1224|Proteobacteria,1S58V@1236|Gammaproteobacteria,1X56V@135614|Xanthomonadales 135614|Xanthomonadales S L,D-transpeptidase catalytic domain - - - - - - - - - - - - YkuD SRR25158195_k127_1944564_1 391008.Smal_0981 7.487e-142 453.0 COG1376@1|root,COG1376@2|Bacteria,1NUD8@1224|Proteobacteria,1SNTJ@1236|Gammaproteobacteria,1XC1X@135614|Xanthomonadales 135614|Xanthomonadales S L,D-transpeptidase catalytic domain - - - - - - - - - - - - YkuD_2 SRR25158195_k127_1944564_2 391008.Smal_0982 1.142e-115 375.0 COG3758@1|root,COG3758@2|Bacteria,1RH9G@1224|Proteobacteria,1T0AU@1236|Gammaproteobacteria,1XCZU@135614|Xanthomonadales 135614|Xanthomonadales S HutD - - - ko:K09975 - - - - ko00000 - - - HutD SRR25158195_k127_1944564_0 522373.Smlt1138 2.794e-316 974.0 COG0369@1|root,COG0369@2|Bacteria,1MWYV@1224|Proteobacteria,1RY05@1236|Gammaproteobacteria,1X33W@135614|Xanthomonadales 135614|Xanthomonadales P Sulfite reductase, alpha subunit (Flavoprotein) - - 1.8.1.2 ko:K00380 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00176 R00858 RC00065 ko00000,ko00001,ko00002,ko01000 - - - Flavodoxin_1,NAD_binding_1 SRR25158195_k127_1944564_4 522373.Smlt1139 1.398e-87 290.0 COG1477@1|root,COG1477@2|Bacteria,1MW6K@1224|Proteobacteria,1RNMZ@1236|Gammaproteobacteria,1X42D@135614|Xanthomonadales 135614|Xanthomonadales H Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein apbE - 2.7.1.180 ko:K03734 - - - - ko00000,ko01000 - - - ApbE SRR25158195_k127_1945141_1 1429851.X548_08840 2.219e-173 553.0 COG2194@1|root,COG2194@2|Bacteria,1MWS7@1224|Proteobacteria,1RMNG@1236|Gammaproteobacteria,1X3D7@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - 2.7.8.43 ko:K03760 ko01503,map01503 M00722 R11555,R11556,R11557 RC00002 ko00000,ko00001,ko00002,ko01000,ko01005 - - - DUF1705,Sulfatase SRR25158195_k127_1945141_2 59538.XP_005974733.1 4.111e-171 539.0 COG0319@1|root,2QUN8@2759|Eukaryota,3A293@33154|Opisthokonta,3C20G@33208|Metazoa,3DJ0S@33213|Bilateria 33208|Metazoa S Sucrose-6F-phosphate phosphohydrolase - - - - - - - - - - - - Hydrolase_3 SRR25158195_k127_1945141_3 391008.Smal_3786 4.308e-118 386.0 COG3932@1|root,COG3932@2|Bacteria,1REE4@1224|Proteobacteria,1S7RD@1236|Gammaproteobacteria,1X767@135614|Xanthomonadales 135614|Xanthomonadales S Exopolysaccharide synthesis, ExoD - - - - - - - - - - - - ExoD SRR25158195_k127_1945141_0 1429851.X548_17760 4.992e-274 845.0 COG2133@1|root,COG2133@2|Bacteria,1MVK5@1224|Proteobacteria,1RPE8@1236|Gammaproteobacteria,1X4AD@135614|Xanthomonadales 135614|Xanthomonadales G sorbosone dehydrogenase sndH - - - - - - - - - - - GSDH SRR25158195_k127_1945141_5 1500890.JQNL01000001_gene3874 7.746e-23 100.0 COG4244@1|root,COG4244@2|Bacteria,1N06D@1224|Proteobacteria,1S79U@1236|Gammaproteobacteria,1X7YS@135614|Xanthomonadales 135614|Xanthomonadales S Membrane - - - - - - - - - - - - - SRR25158195_k127_1945587_0 522373.Smlt3883 0.0 1292.0 COG0586@1|root,COG0671@1|root,COG0586@2|Bacteria,COG0671@2|Bacteria,1R0F3@1224|Proteobacteria,1RPDS@1236|Gammaproteobacteria,1X535@135614|Xanthomonadales 135614|Xanthomonadales I LssY C-terminus - - - - - - - - - - - - LssY_C,PAP2,SNARE_assoc SRR25158195_k127_1945587_1 522373.Smlt3882 1.713e-106 346.0 COG0515@1|root,COG0515@2|Bacteria,1QVSB@1224|Proteobacteria,1SJ90@1236|Gammaproteobacteria,1XCXV@135614|Xanthomonadales 135614|Xanthomonadales KLT serine threonine protein kinase - - - - - - - - - - - - - SRR25158195_k127_1950836_0 1500890.JQNL01000001_gene856 1.496e-167 535.0 COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,1RMMJ@1236|Gammaproteobacteria,1X2XI@135614|Xanthomonadales 135614|Xanthomonadales I acyl-CoA dehydrogenase acdA - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N SRR25158195_k127_1950836_1 1385515.N791_14135 3.987e-78 274.0 COG2902@1|root,COG2902@2|Bacteria,1MXNV@1224|Proteobacteria,1RQVZ@1236|Gammaproteobacteria,1X46R@135614|Xanthomonadales 135614|Xanthomonadales E glutamate dehydrogenase - - 1.4.1.2 ko:K15371 ko00220,ko00250,ko00430,ko00910,ko01100,map00220,map00250,map00430,map00910,map01100 - R00243 RC00006,RC02799 ko00000,ko00001,ko01000 - - - Bac_GDH,GDH_N SRR25158195_k127_195134_5 1429851.X548_08425 9.246e-08 55.0 COG3437@1|root,COG5001@1|root,COG3437@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X5HD@135614|Xanthomonadales 135614|Xanthomonadales T C-di-GMP phosphodiesterase - - - - - - - - - - - - EAL,GGDEF,Response_reg SRR25158195_k127_195134_1 522373.Smlt2324 0.0 1262.0 COG4585@1|root,COG4585@2|Bacteria,1MWPN@1224|Proteobacteria,1RYA9@1236|Gammaproteobacteria,1X3H8@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA_3,PAS,PAS_4,PAS_8,PAS_9 SRR25158195_k127_195134_0 391008.Smal_1914 0.0 1784.0 COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X3PH@135614|Xanthomonadales 135614|Xanthomonadales T GGDEF domain - - 2.7.7.65 ko:K21023 ko02025,map02025 - - - ko00000,ko00001,ko01000 - - - EAL,GAF_2,GGDEF,HAMP,MHYT,PAS_3,PAS_4,PAS_9 SRR25158195_k127_195134_3 1120963.KB894494_gene3594 1.2e-19 102.0 COG5620@1|root,COG5620@2|Bacteria,1RISJ@1224|Proteobacteria,1S91N@1236|Gammaproteobacteria 1236|Gammaproteobacteria S GAD-like domain - - - - - - - - - - - - DUF1851,GAD-like SRR25158195_k127_1956630_0 1429851.X548_06405 2.659e-207 645.0 COG0821@1|root,COG0821@2|Bacteria,1MUAX@1224|Proteobacteria,1RMXZ@1236|Gammaproteobacteria,1X491@135614|Xanthomonadales 135614|Xanthomonadales I Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate ispG GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 ko:K03526 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R08689,R10859 RC01486 ko00000,ko00001,ko00002,ko01000 - - - GcpE SRR25158195_k127_1956630_1 1429851.X548_06410 4.064e-149 473.0 COG0671@1|root,COG0671@2|Bacteria,1RDK3@1224|Proteobacteria,1SG4A@1236|Gammaproteobacteria,1XC8I@135614|Xanthomonadales 135614|Xanthomonadales I PAP2 superfamily - - 3.6.1.27 ko:K19302 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - PAP2 SRR25158195_k127_1956630_2 391008.Smal_1526 6.944e-129 412.0 COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,1RQ1J@1236|Gammaproteobacteria,1X3GJ@135614|Xanthomonadales 135614|Xanthomonadales K In Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system sirA - - - - - - - - - - - GerE,Response_reg SRR25158195_k127_1957082_0 1206777.B195_19738 7.658e-266 846.0 COG3188@1|root,COG3188@2|Bacteria,1R2PY@1224|Proteobacteria,1RY4Z@1236|Gammaproteobacteria 1236|Gammaproteobacteria NU Pilus assembly protein - - - ko:K21966 - - - - ko00000,ko02044 - - - CooC_C,TcfC SRR25158195_k127_1961709_0 1429851.X548_08545 4.825e-284 875.0 COG2256@1|root,COG2256@2|Bacteria,1MUVS@1224|Proteobacteria,1RPBY@1236|Gammaproteobacteria,1X52A@135614|Xanthomonadales 135614|Xanthomonadales L Recombination factor protein RarA ycaJ - - ko:K07478 - - - - ko00000 - - - AAA,AAA_assoc_2,MgsA_C,RuvB_N SRR25158195_k127_1961709_3 522373.Smlt2349 7.759e-59 207.0 COG3152@1|root,COG3152@2|Bacteria,1MZJ4@1224|Proteobacteria,1SA1N@1236|Gammaproteobacteria,1X7Q3@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - DUF805 SRR25158195_k127_1961709_2 391008.Smal_1939 2.486e-199 623.0 COG2819@1|root,COG2819@2|Bacteria,1RB1X@1224|Proteobacteria,1S5BX@1236|Gammaproteobacteria,1X6P9@135614|Xanthomonadales 135614|Xanthomonadales S Putative esterase - - - ko:K07017 - - - - ko00000 - - - Esterase SRR25158195_k127_1961709_1 391008.Smal_1940 3.791e-207 650.0 COG3391@1|root,COG3391@2|Bacteria,1MXBS@1224|Proteobacteria,1S7V0@1236|Gammaproteobacteria 1236|Gammaproteobacteria DZ regulator of chromosome condensation, RCC1 - - - - - - - - - - - - - SRR25158195_k127_1962784_5 743721.Psesu_2890 7.113e-141 451.0 COG0463@1|root,COG0463@2|Bacteria,1PVP4@1224|Proteobacteria,1RQUH@1236|Gammaproteobacteria,1XD5Y@135614|Xanthomonadales 135614|Xanthomonadales M Glycosyl transferase family 2 - - - - - - - - - - - - Glycos_transf_2 SRR25158195_k127_1962784_3 522373.Smlt4171 1.94e-218 685.0 COG1887@1|root,COG1887@2|Bacteria,1R4G5@1224|Proteobacteria,1RNVW@1236|Gammaproteobacteria,1X5RS@135614|Xanthomonadales 135614|Xanthomonadales M glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - - - - - - - - - - Epimerase_2,Glyphos_transf SRR25158195_k127_1962784_1 1429851.X548_16675 1.83e-259 807.0 COG3428@1|root,COG3428@2|Bacteria,1R51P@1224|Proteobacteria,1RNVC@1236|Gammaproteobacteria,1XD0K@135614|Xanthomonadales 135614|Xanthomonadales S Bacterial PH domain - - - ko:K08981 - - - - ko00000 - - - bPH_2 SRR25158195_k127_1962784_6 391008.Smal_3576 3.04e-92 310.0 COG3402@1|root,COG3402@2|Bacteria,1N8GD@1224|Proteobacteria,1SDJM@1236|Gammaproteobacteria,1XD2V@135614|Xanthomonadales 135614|Xanthomonadales S Bacterial PH domain - - - ko:K09167 - - - - ko00000 - - - bPH_2 SRR25158195_k127_1962784_2 1429851.X548_16665 5.824e-231 718.0 COG0807@1|root,COG0807@2|Bacteria,1MWZR@1224|Proteobacteria,1RMFX@1236|Gammaproteobacteria,1X5JH@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate ribA - 3.5.4.25 ko:K01497 ko00740,ko00790,ko01100,ko01110,ko02024,map00740,map00790,map01100,map01110,map02024 M00125 R00425 RC00293,RC02504 ko00000,ko00001,ko00002,ko01000 - - - GTP_cyclohydro2 SRR25158195_k127_1962784_4 391008.Smal_3574 1.229e-187 591.0 COG1560@1|root,COG1560@2|Bacteria,1Q41N@1224|Proteobacteria,1RRRE@1236|Gammaproteobacteria,1X4IR@135614|Xanthomonadales 135614|Xanthomonadales M Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA htrB - 2.3.1.241 ko:K02517 ko00540,ko01100,map00540,map01100 M00060 R05146 RC00037,RC00039 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Lip_A_acyltrans SRR25158195_k127_1962784_7 1429851.X548_16655 6.132e-87 289.0 COG1490@1|root,COG1490@2|Bacteria,1RGTV@1224|Proteobacteria,1S61I@1236|Gammaproteobacteria,1X6FE@135614|Xanthomonadales 135614|Xanthomonadales J rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality dtd GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - ko:K07560 - - - - ko00000,ko01000,ko03016 - - - Tyr_Deacylase SRR25158195_k127_1962784_0 522373.Smlt4165 0.0 1141.0 COG0568@1|root,COG0568@2|Bacteria,1MVNJ@1224|Proteobacteria,1RMQI@1236|Gammaproteobacteria,1X44R@135614|Xanthomonadales 135614|Xanthomonadales K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth rpoD - - ko:K03086 - - - - ko00000,ko03021 - - - Sigma70_ner,Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4 SRR25158195_k127_1967481_1 522373.Smlt2823 1.664e-181 572.0 COG0477@1|root,COG2814@2|Bacteria,1MVSC@1224|Proteobacteria,1RY0N@1236|Gammaproteobacteria 1236|Gammaproteobacteria EGP Major facilitator superfamily - - - - - - - - - - - - MFS_1,Sugar_tr SRR25158195_k127_1967481_0 391008.Smal_2276 1.409e-204 649.0 COG1169@1|root,COG1169@2|Bacteria,1MVB7@1224|Proteobacteria,1RRBX@1236|Gammaproteobacteria,1X6BS@135614|Xanthomonadales 135614|Xanthomonadales HQ chorismate binding enzyme - - 5.4.4.2 ko:K02361 ko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130 M00116 R01717 RC00588 ko00000,ko00001,ko00002,ko01000 - - - Chorismate_bind SRR25158195_k127_1967481_2 391008.Smal_2275 4.352e-78 262.0 COG1021@1|root,COG1021@2|Bacteria,1NSN8@1224|Proteobacteria,1RP8K@1236|Gammaproteobacteria,1X5S8@135614|Xanthomonadales 135614|Xanthomonadales Q AMP-binding enzyme C-terminal domain - - 2.7.7.58,6.3.2.14 ko:K02363 ko01053,ko01110,ko01130,map01053,map01110,map01130 - R07644 RC00162,RC03046 ko00000,ko00001,ko01000,ko01008 - - - AMP-binding,AMP-binding_C SRR25158195_k127_1982506_1 522373.Smlt2612 3.177e-51 183.0 COG0637@1|root,COG0637@2|Bacteria,1NSPA@1224|Proteobacteria,1RQET@1236|Gammaproteobacteria,1XCM2@135614|Xanthomonadales 135614|Xanthomonadales S Haloacid dehalogenase-like hydrolase - - - - - - - - - - - - HAD_2 SRR25158195_k127_1982506_2 1429851.X548_17010 9.961e-19 97.0 2A4A3@1|root,30SVK@2|Bacteria,1PCCM@1224|Proteobacteria,1SXAU@1236|Gammaproteobacteria,1X61B@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_1982506_0 1429851.X548_09100 3.931e-302 936.0 COG2936@1|root,COG2936@2|Bacteria,1QU2I@1224|Proteobacteria,1S1VW@1236|Gammaproteobacteria,1X5MI@135614|Xanthomonadales 135614|Xanthomonadales S X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - - - - - - - - - - PepX_C,Peptidase_S15 SRR25158195_k127_1982506_3 1206777.B195_19838 2.243e-09 65.0 COG0642@1|root,COG0834@1|root,COG0642@2|Bacteria,COG0834@2|Bacteria,1NXDJ@1224|Proteobacteria 1224|Proteobacteria T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,Hpt,Response_reg,SBP_bac_3 SRR25158195_k127_1982556_1 391008.Smal_3877 3.741e-127 411.0 COG3397@1|root,COG3397@2|Bacteria,1MXNR@1224|Proteobacteria,1RQZB@1236|Gammaproteobacteria,1XA20@135614|Xanthomonadales 135614|Xanthomonadales S Lytic polysaccharide mono-oxygenase, cellulose-degrading - - - ko:K03933 - - - - ko00000 - AA10,CBM73 - LPMO_10 SRR25158195_k127_1982556_3 391008.Smal_3876 4.382e-78 269.0 2CVTP@1|root,32SY9@2|Bacteria,1N209@1224|Proteobacteria,1SGJS@1236|Gammaproteobacteria,1XD2A@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1203) - - - - - - - - - - - - DUF1203 SRR25158195_k127_1982556_0 391008.Smal_3874 3.248e-282 876.0 COG0596@1|root,COG0596@2|Bacteria,1R6KU@1224|Proteobacteria,1RNTQ@1236|Gammaproteobacteria,1X2Y2@135614|Xanthomonadales 135614|Xanthomonadales I hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_4 SRR25158195_k127_1982556_2 391008.Smal_3873 1.505e-108 356.0 COG4555@1|root,COG4555@2|Bacteria,1QU2T@1224|Proteobacteria,1RY2V@1236|Gammaproteobacteria,1X307@135614|Xanthomonadales 135614|Xanthomonadales CP abc transporter atp-binding protein - - 3.6.3.7 ko:K09697 ko02010,ko02020,map02010,map02020 M00253 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.115 - - ABC_tran SRR25158195_k127_1985055_3 452637.Oter_2605 0.0001523 54.0 COG3290@1|root,COG3292@1|root,COG4191@1|root,COG3290@2|Bacteria,COG3292@2|Bacteria,COG4191@2|Bacteria,46TZW@74201|Verrucomicrobia,3K9EP@414999|Opitutae 2|Bacteria T ATP-binding region ATPase domain protein - - 2.1.1.80,3.1.1.61,3.1.3.3 ko:K07315,ko:K13924 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035,ko03021 - - - CHASE4,GGDEF,HAMP,HATPase_c,HDOD,HisKA,PAS,PAS_4,PAS_8,PAS_9,Reg_prop,Y_Y_Y SRR25158195_k127_1985055_1 1144275.COCOR_07194 2.962e-38 146.0 COG0640@1|root,COG0640@2|Bacteria,1N4FB@1224|Proteobacteria 1224|Proteobacteria K helix_turn_helix, Arsenical Resistance Operon Repressor - - - - - - - - - - - - HTH_20 SRR25158195_k127_1985055_0 452637.Oter_1306 1.351e-49 180.0 COG3832@1|root,COG3832@2|Bacteria,46TA6@74201|Verrucomicrobia 74201|Verrucomicrobia S Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 SRR25158195_k127_1985893_1 391008.Smal_3948 1.531e-264 820.0 COG4529@1|root,COG4529@2|Bacteria,1MU3U@1224|Proteobacteria,1RYHC@1236|Gammaproteobacteria,1X49H@135614|Xanthomonadales 135614|Xanthomonadales S FAD-NAD(P)-binding - - - - - - - - - - - - NAD_binding_9 SRR25158195_k127_1985893_0 522373.Smlt4597 1.849e-296 912.0 COG1502@1|root,COG1502@2|Bacteria,1MWUW@1224|Proteobacteria,1RPQG@1236|Gammaproteobacteria,1X4Y0@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol cls - - ko:K06131 ko00564,ko01100,map00564,map01100 - R07390 RC00017 ko00000,ko00001,ko01000 - - - PLDc_2,PLDc_N SRR25158195_k127_199421_0 522373.Smlt1794 5.537e-225 701.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,1RM9E@1236|Gammaproteobacteria,1X4C8@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the ABC transporter superfamily ugpC - - ko:K10112 ko02010,map02010 M00194,M00196,M00197,M00200,M00201,M00206,M00207,M00491,M00602,M00605,M00606 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1 - - ABC_tran,TOBE_2 SRR25158195_k127_199421_1 522373.Smlt1795 2.349e-117 379.0 COG0354@1|root,COG0354@2|Bacteria,1N852@1224|Proteobacteria,1RPWB@1236|Gammaproteobacteria,1X64E@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the GcvT family - - - ko:K06980 - - - - ko00000,ko03016 - - - GCV_T,GCV_T_C SRR25158195_k127_2005381_0 522373.Smlt1246 3.141e-171 542.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1MWGR@1224|Proteobacteria,1RYFT@1236|Gammaproteobacteria,1X3IT@135614|Xanthomonadales 135614|Xanthomonadales EU peptidase - - - - - - - - - - - - PD40,Peptidase_S9 SRR25158195_k127_2005381_1 522373.Smlt1245 8.037e-71 240.0 COG1297@1|root,COG1297@2|Bacteria,1N7SK@1224|Proteobacteria,1RNC8@1236|Gammaproteobacteria,1X4Q2@135614|Xanthomonadales 135614|Xanthomonadales S transporter oliA - - - - - - - - - - - OPT SRR25158195_k127_2008343_0 391008.Smal_1402 3.774e-144 457.0 COG0526@1|root,COG3386@1|root,COG0526@2|Bacteria,COG3386@2|Bacteria,1QTY9@1224|Proteobacteria,1S0UZ@1236|Gammaproteobacteria,1X3M8@135614|Xanthomonadales 135614|Xanthomonadales CO Nhl repeat - - - - - - - - - - - - AhpC-TSA,NHL,Redoxin SRR25158195_k127_2008343_2 522373.Smlt1643 4.643e-92 304.0 COG0394@1|root,COG0394@2|Bacteria,1RH90@1224|Proteobacteria,1S5X6@1236|Gammaproteobacteria,1X6FT@135614|Xanthomonadales 135614|Xanthomonadales T Low molecular weight phosphotyrosine protein phosphatase - - 3.1.3.48 ko:K01104 - - - - ko00000,ko01000 - - - LMWPc SRR25158195_k127_2008343_1 391008.Smal_1400 8.554e-107 347.0 COG1212@1|root,COG1212@2|Bacteria,1MUUU@1224|Proteobacteria,1RMAE@1236|Gammaproteobacteria,1X3JD@135614|Xanthomonadales 135614|Xanthomonadales M Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria kdsB - 2.7.7.38 ko:K00979 ko00540,ko01100,map00540,map01100 M00063 R03351,R11396 RC00152,RC00910 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CTP_transf_3 SRR25158195_k127_2019093_4 522373.Smlt1823 1.464e-37 141.0 COG0221@1|root,COG0221@2|Bacteria,1RDGH@1224|Proteobacteria,1S42I@1236|Gammaproteobacteria,1X6QH@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions - - 3.6.1.1 ko:K01507 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyrophosphatase SRR25158195_k127_2019093_0 522373.Smlt1825 4.511e-304 935.0 COG0415@1|root,COG0415@2|Bacteria,1MV9Y@1224|Proteobacteria,1RNGJ@1236|Gammaproteobacteria,1X3VI@135614|Xanthomonadales 135614|Xanthomonadales L Belongs to the DNA photolyase family phr - 4.1.99.3 ko:K01669 - - - - ko00000,ko01000,ko03400 - - - DNA_photolyase,FAD_binding_7 SRR25158195_k127_2019093_1 522373.Smlt1826 1.982e-140 449.0 COG2885@1|root,COG2885@2|Bacteria,1MYBP@1224|Proteobacteria,1RVRF@1236|Gammaproteobacteria,1X4JP@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the ompA family - - - - - - - - - - - - Gly-zipper_Omp,Gly-zipper_YMGG,OmpA SRR25158195_k127_2019093_2 861208.AGROH133_04605 6.753e-110 359.0 COG4221@1|root,COG4221@2|Bacteria,1MUF8@1224|Proteobacteria,2TUSA@28211|Alphaproteobacteria,4B809@82115|Rhizobiaceae 28211|Alphaproteobacteria S Belongs to the short-chain dehydrogenases reductases (SDR) family - - - - - - - - - - - - adh_short SRR25158195_k127_2019093_3 1211115.ALIQ01000145_gene1032 1.288e-48 177.0 COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2TUNU@28211|Alphaproteobacteria,3NCF2@45404|Beijerinckiaceae 28211|Alphaproteobacteria K LysR substrate binding domain - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2024511_5 1429851.X548_00115 5.401e-90 297.0 COG1612@1|root,COG1612@2|Bacteria,1MVJ4@1224|Proteobacteria,1RQWB@1236|Gammaproteobacteria,1X432@135614|Xanthomonadales 135614|Xanthomonadales O cytochrome oxidase assembly - - - ko:K02259 ko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714 M00154 R07412 RC00769 ko00000,ko00001,ko00002,ko03029 3.D.4.4 - - COX15-CtaA SRR25158195_k127_2024511_3 1429851.X548_00110 1.08e-117 379.0 COG1999@1|root,COG1999@2|Bacteria,1NHSQ@1224|Proteobacteria,1SHS6@1236|Gammaproteobacteria,1XCN2@135614|Xanthomonadales 135614|Xanthomonadales S signal sequence binding - - - - - - - - - - - - - SRR25158195_k127_2024511_2 522373.Smlt0434 2.249e-136 436.0 COG3346@1|root,COG3346@2|Bacteria,1MZUH@1224|Proteobacteria,1S8S0@1236|Gammaproteobacteria,1X6QG@135614|Xanthomonadales 135614|Xanthomonadales S SURF1-like protein - - - - - - - - - - - - SURF1 SRR25158195_k127_2024511_6 391008.Smal_0315 5.477e-30 137.0 2EGIJ@1|root,33AAQ@2|Bacteria,1NH9B@1224|Proteobacteria,1SGKJ@1236|Gammaproteobacteria,1X89Z@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2909) VL23_10685 - - - - - - - - - - - DUF2909 SRR25158195_k127_2024511_0 1429851.X548_00095 3.718e-190 599.0 COG1845@1|root,COG1845@2|Bacteria,1MUCK@1224|Proteobacteria,1RN9D@1236|Gammaproteobacteria,1X3ZT@135614|Xanthomonadales 135614|Xanthomonadales C Heme copper-type cytochrome quinol oxidase subunit 3 cox3 - 1.9.3.1 ko:K02276 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.4,3.D.4.6 - - COX3 SRR25158195_k127_2024511_4 391008.Smal_0313 3.281e-116 378.0 COG3175@1|root,COG3175@2|Bacteria,1RDTU@1224|Proteobacteria,1S5XA@1236|Gammaproteobacteria,1X5Z6@135614|Xanthomonadales 135614|Xanthomonadales O cytochrome c oxidase assembly protein cox11 - - ko:K02258 ko00190,ko01100,ko04714,map00190,map01100,map04714 M00154 - - ko00000,ko00001,ko00002,ko03029 3.D.4.8 - - CtaG_Cox11 SRR25158195_k127_2024511_1 522373.Smlt0429 2.555e-170 534.0 COG0843@1|root,COG0843@2|Bacteria,1MU7S@1224|Proteobacteria,1RPC3@1236|Gammaproteobacteria,1X34C@135614|Xanthomonadales 135614|Xanthomonadales C Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B ctaD - 1.9.3.1 ko:K02274 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.2,3.D.4.3,3.D.4.4,3.D.4.6 - - COX1 SRR25158195_k127_202780_1 522373.Smlt3878 2.808e-158 503.0 2DC2D@1|root,2ZCMG@2|Bacteria,1R8RP@1224|Proteobacteria,1S3BB@1236|Gammaproteobacteria,1X9X7@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3829) - - - - - - - - - - - - DUF3829 SRR25158195_k127_202780_0 391008.Smal_3292 8.183e-165 537.0 COG2126@1|root,COG2126@2|Bacteria,1MXCS@1224|Proteobacteria,1RPCN@1236|Gammaproteobacteria,1X2YW@135614|Xanthomonadales 135614|Xanthomonadales J Ion transporter - - - ko:K10716 - - - - ko00000,ko02000 1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6 - - Ion_trans SRR25158195_k127_202780_2 1429851.X548_15105 5.051e-120 391.0 COG4992@1|root,COG4992@2|Bacteria,1MV3C@1224|Proteobacteria,1RMV1@1236|Gammaproteobacteria,1X323@135614|Xanthomonadales 135614|Xanthomonadales E also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate argD GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 ko:K00821 ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230 M00016,M00028,M00845 R02283,R04475 RC00006,RC00062 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 SRR25158195_k127_2028919_0 1131451.O1K_11260 3.731e-56 200.0 COG3501@1|root,COG4253@1|root,COG3501@2|Bacteria,COG4253@2|Bacteria,1MU7Q@1224|Proteobacteria,1SBED@1236|Gammaproteobacteria,1X9K5@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized protein conserved in bacteria (DUF2345) - - - - - - - - - - - - DUF2345,Phage_GPD,T6SS_Vgr SRR25158195_k127_2028919_1 1532557.JL37_20625 2.327e-14 83.0 2BSGH@1|root,32MIM@2|Bacteria,1RIFJ@1224|Proteobacteria,2VUEC@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - DUF4123 SRR25158195_k127_2031434_0 391008.Smal_3327 0.0 1163.0 COG0405@1|root,COG0405@2|Bacteria,1MUV6@1224|Proteobacteria,1RMIT@1236|Gammaproteobacteria,1X3TV@135614|Xanthomonadales 135614|Xanthomonadales M gamma-glutamyltransferase - - 2.3.2.2,3.4.19.13 ko:K00681 ko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100 - R00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935 RC00064,RC00090,RC00096 ko00000,ko00001,ko01000,ko01002 - - - G_glu_transpept SRR25158195_k127_2031434_4 522373.Smlt3913 7.933e-207 658.0 COG0059@1|root,COG0059@2|Bacteria,1MV7M@1224|Proteobacteria,1RNA8@1236|Gammaproteobacteria,1X35R@135614|Xanthomonadales 135614|Xanthomonadales EH Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate ilvC - 1.1.1.86 ko:K00053 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R03051,R04439,R04440,R05068,R05069,R05071 RC00726,RC00836,RC00837,RC01726 ko00000,ko00001,ko00002,ko01000 - - - IlvC,IlvN SRR25158195_k127_2031434_1 522373.Smlt3914 0.0 1127.0 COG0028@1|root,COG0028@2|Bacteria,1MU6U@1224|Proteobacteria,1RMQQ@1236|Gammaproteobacteria,1X45G@135614|Xanthomonadales 135614|Xanthomonadales E Acetolactate synthase ilvG - 2.2.1.6 ko:K01652 ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R00006,R00014,R00226,R03050,R04672,R04673,R08648 RC00027,RC00106,RC01192,RC02744,RC02893 ko00000,ko00001,ko00002,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N SRR25158195_k127_2031434_3 522373.Smlt3916 3.394e-211 660.0 COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,1RPGU@1236|Gammaproteobacteria,1X4UF@135614|Xanthomonadales 135614|Xanthomonadales E Threonine dehydratase tdcB - 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - ACT,PALP SRR25158195_k127_2031434_2 522373.Smlt3917 0.0 1000.0 COG0119@1|root,COG0119@2|Bacteria,1MUNQ@1224|Proteobacteria,1RMWE@1236|Gammaproteobacteria,1X3PI@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) leuA - 2.3.3.13 ko:K01649 ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230 M00432 R01213 RC00004,RC00470,RC02754 br01601,ko00000,ko00001,ko00002,ko01000 - - - HMGL-like,LeuA_dimer SRR25158195_k127_2031434_5 391008.Smal_3333 1.096e-54 196.0 COG4106@1|root,COG4106@2|Bacteria,1Q2Y3@1224|Proteobacteria,1S2MJ@1236|Gammaproteobacteria,1X6B4@135614|Xanthomonadales 135614|Xanthomonadales S Methionine biosynthesis protein MetW - - - - - - - - - - - - Methyltransf_11 SRR25158195_k127_2031689_9 1429851.X548_06975 5.523e-72 247.0 COG0477@1|root,COG2814@2|Bacteria,1MVQQ@1224|Proteobacteria,1RNR4@1236|Gammaproteobacteria,1X604@135614|Xanthomonadales 135614|Xanthomonadales EGP Sugar (and other) transporter vanK - - - - - - - - - - - MFS_1,Sugar_tr SRR25158195_k127_2031689_4 1429851.X548_06970 2.616e-156 509.0 COG0710@1|root,COG0710@2|Bacteria,1NG0G@1224|Proteobacteria,1RYZ4@1236|Gammaproteobacteria 1236|Gammaproteobacteria E Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate aroD GO:0003674,GO:0003824,GO:0003855,GO:0006082,GO:0006725,GO:0008150,GO:0008152,GO:0009058,GO:0009712,GO:0009713,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018958,GO:0019438,GO:0019752,GO:0032787,GO:0042537,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046189,GO:0046278,GO:0046279,GO:0046394,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617 4.2.1.10 ko:K03785 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03084 RC00848 ko00000,ko00001,ko00002,ko01000 - - iEC042_1314.EC042_1860 DHquinase_I SRR25158195_k127_2031689_2 1429851.X548_06965 1.315e-272 840.0 COG3659@1|root,COG3659@2|Bacteria,1R71M@1224|Proteobacteria,1S128@1236|Gammaproteobacteria,1X72H@135614|Xanthomonadales 135614|Xanthomonadales M Carbohydrate-selective porin, OprB family - - - ko:K07267 - - - - ko00000,ko02000 1.B.19.1 - - OprB SRR25158195_k127_2031689_1 1429851.X548_06960 3.166e-297 917.0 COG3420@1|root,COG3420@2|Bacteria,1R5YP@1224|Proteobacteria,1RZFH@1236|Gammaproteobacteria 1236|Gammaproteobacteria P Periplasmic copper-binding protein (NosD) quiC - 4.2.1.118 ko:K09483 ko00400,ko01110,ko01130,map00400,map01110,map01130 - R01627 RC00568 ko00000,ko00001,ko01000 - - - Beta_helix,NosD SRR25158195_k127_2031689_0 1429851.X548_06955 2.764e-315 971.0 COG0397@1|root,COG0397@2|Bacteria,1MVK3@1224|Proteobacteria,1RNCS@1236|Gammaproteobacteria,1X3RJ@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0061 (SELO) family - - - - - - - - - - - - UPF0061 SRR25158195_k127_2031689_6 522373.Smlt2023 3.052e-136 437.0 COG0625@1|root,COG0625@2|Bacteria,1MXHH@1224|Proteobacteria,1RNWZ@1236|Gammaproteobacteria,1X4GA@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the GST superfamily gst6 - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C,GST_C_3,GST_N,GST_N_3 SRR25158195_k127_2031689_10 522373.Smlt2022 5.8e-38 145.0 COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,1SCA7@1236|Gammaproteobacteria,1X7PN@135614|Xanthomonadales 135614|Xanthomonadales K Cold-shock protein cspD - - ko:K03704 - - - - ko00000,ko03000 - - - CSD SRR25158195_k127_2031689_8 391008.Smal_1624 1.901e-81 273.0 COG1671@1|root,COG1671@2|Bacteria,1RCZA@1224|Proteobacteria,1S3QM@1236|Gammaproteobacteria,1X6GS@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0178 family - - - ko:K09768 - - - - ko00000 - - - DUF188 SRR25158195_k127_2031689_7 7460.GB47764-PA 6.614e-87 299.0 COG0564@1|root,KOG1919@2759|Eukaryota,39IS4@33154|Opisthokonta,3C506@33208|Metazoa,3DKJN@33213|Bilateria 33208|Metazoa A RNA pseudouridylate synthase - - - - - - - - - - - - PseudoU_synth_2 SRR25158195_k127_2031689_5 7460.GB47765-PA 2.717e-155 494.0 COG4681@1|root,2SRA4@2759|Eukaryota,3ANTZ@33154|Opisthokonta,3C1MW@33208|Metazoa,3DHKH@33213|Bilateria,422R6@6656|Arthropoda,3SRBX@50557|Insecta 33208|Metazoa S YaeQ - - - - - - - - - - - - YaeQ SRR25158195_k127_2031689_3 522373.Smlt2017 7.424e-187 590.0 COG2081@1|root,COG2081@2|Bacteria,1MUGC@1224|Proteobacteria,1RNCW@1236|Gammaproteobacteria,1X3ZQ@135614|Xanthomonadales 135614|Xanthomonadales S HI0933-like protein - - - ko:K07007 - - - - ko00000 - - - HI0933_like SRR25158195_k127_2039324_2 391008.Smal_3880 2.122e-24 102.0 COG1131@1|root,COG1131@2|Bacteria,1MUW7@1224|Proteobacteria,1RMC5@1236|Gammaproteobacteria,1X31S@135614|Xanthomonadales 135614|Xanthomonadales V ABC transporter - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran,DUF4162 SRR25158195_k127_2039324_0 391008.Smal_3879 3.893e-155 491.0 COG1018@1|root,COG1018@2|Bacteria,1REP4@1224|Proteobacteria,1S7ZN@1236|Gammaproteobacteria,1XCEZ@135614|Xanthomonadales 135614|Xanthomonadales C Oxidoreductase FAD-binding domain - - - - - - - - - - - - FAD_binding_6,NAD_binding_1 SRR25158195_k127_2039324_1 391008.Smal_3877 1.607e-108 352.0 COG3397@1|root,COG3397@2|Bacteria,1MXNR@1224|Proteobacteria,1RQZB@1236|Gammaproteobacteria,1XA20@135614|Xanthomonadales 135614|Xanthomonadales S Lytic polysaccharide mono-oxygenase, cellulose-degrading - - - ko:K03933 - - - - ko00000 - AA10,CBM73 - LPMO_10 SRR25158195_k127_204096_4 391008.Smal_0223 4.765e-111 359.0 COG2084@1|root,COG2084@2|Bacteria,1RA7F@1224|Proteobacteria,1RMMY@1236|Gammaproteobacteria,1X5AQ@135614|Xanthomonadales 135614|Xanthomonadales I Belongs to the 3-hydroxyisobutyrate dehydrogenase family mmsB - 1.1.1.31 ko:K00020 ko00280,ko01100,map00280,map01100 - R05066 RC00099 ko00000,ko00001,ko01000 - - - NAD_binding_11,NAD_binding_2 SRR25158195_k127_204096_5 522373.Smlt0269 1.093e-83 278.0 COG1764@1|root,COG1764@2|Bacteria,1RD1A@1224|Proteobacteria,1S42A@1236|Gammaproteobacteria,1XC0A@135614|Xanthomonadales 135614|Xanthomonadales O organic hydroperoxide resistance protein - - - - - - - - - - - - OsmC SRR25158195_k127_204096_1 391008.Smal_0225 5.069e-190 597.0 COG3965@1|root,COG3965@2|Bacteria,1MXVG@1224|Proteobacteria,1RSB7@1236|Gammaproteobacteria,1X55B@135614|Xanthomonadales 135614|Xanthomonadales P cation diffusion facilitator family transporter - - - - - - - - - - - - Cation_efflux SRR25158195_k127_204096_0 391008.Smal_0227 1.085e-211 660.0 COG0042@1|root,COG0042@2|Bacteria,1MUY1@1224|Proteobacteria,1RN28@1236|Gammaproteobacteria,1X44J@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs dusA - - ko:K05539 - - - - ko00000,ko01000,ko03016 - - - Dus SRR25158195_k127_204096_6 522373.Smlt0276 1.199e-64 225.0 2BUUC@1|root,32Q63@2|Bacteria,1QB9F@1224|Proteobacteria,1T6TT@1236|Gammaproteobacteria,1X851@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_204096_3 522373.Smlt0277 1.466e-145 461.0 COG0745@1|root,COG0745@2|Bacteria,1N0YI@1224|Proteobacteria,1RMWT@1236|Gammaproteobacteria,1X2XT@135614|Xanthomonadales 135614|Xanthomonadales KT Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain phoP - - ko:K07660 ko01503,ko02020,map01503,map02020 M00444,M00709,M00721,M00723,M00724,M00744 - - ko00000,ko00001,ko00002,ko01504,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_204096_2 1429851.X548_20450 2.132e-187 587.0 COG0642@1|root,COG0642@2|Bacteria,1MX6R@1224|Proteobacteria,1T213@1236|Gammaproteobacteria,1X4YX@135614|Xanthomonadales 135614|Xanthomonadales T Signal transduction histidine kinase - - 2.7.13.3 ko:K07637 ko01503,ko02020,map01503,map02020 M00444,M00709,M00721,M00723,M00724,M00744 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko01504,ko02022 - - - HATPase_c SRR25158195_k127_2047872_2 316273.XCV2615 1.244e-07 57.0 COG0582@1|root,COG0582@2|Bacteria,1MU23@1224|Proteobacteria,1RMJ1@1236|Gammaproteobacteria,1X4IM@135614|Xanthomonadales 135614|Xanthomonadales L Belongs to the 'phage' integrase family - - - - - - - - - - - - Arm-DNA-bind_3,Phage_integrase SRR25158195_k127_2047872_0 522373.Smlt3340 0.0 1560.0 COG1629@1|root,COG4771@2|Bacteria,1MWKN@1224|Proteobacteria,1RZM0@1236|Gammaproteobacteria,1X9J3@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_2047872_1 1429851.X548_12300 1.746e-95 314.0 COG0349@1|root,COG0349@2|Bacteria,1MURV@1224|Proteobacteria,1RPBP@1236|Gammaproteobacteria,1X36Q@135614|Xanthomonadales 135614|Xanthomonadales J Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides rnd - 3.1.13.5 ko:K03684 - - - - ko00000,ko01000,ko03016 - - - DNA_pol_A_exo1,HRDC SRR25158195_k127_2057059_3 522373.Smlt1609 5.245e-59 204.0 2CHAX@1|root,32ZC9@2|Bacteria,1N6X2@1224|Proteobacteria,1SGKD@1236|Gammaproteobacteria,1X7HY@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3301) - - - - - - - - - - - - DUF3301 SRR25158195_k127_2057059_2 391008.Smal_1365 5.944e-86 287.0 COG2969@1|root,COG2969@2|Bacteria,1MZ2Q@1224|Proteobacteria,1S8WT@1236|Gammaproteobacteria,1X6JT@135614|Xanthomonadales 135614|Xanthomonadales S stringent starvation protein b sspB - - ko:K03600 - - - - ko00000,ko03021 - - - SspB SRR25158195_k127_2057059_1 522373.Smlt1607 2.624e-132 424.0 COG0625@1|root,COG0625@2|Bacteria,1MXJD@1224|Proteobacteria,1RP12@1236|Gammaproteobacteria,1X2Y8@135614|Xanthomonadales 135614|Xanthomonadales O stringent starvation protein A sspA - - ko:K03599 - - - - ko00000,ko02000,ko03021 1.A.12.3.1 - - GST_C,GST_N,GST_N_3 SRR25158195_k127_2057059_0 391008.Smal_1363 7.473e-155 489.0 COG2857@1|root,COG2857@2|Bacteria,1QFU2@1224|Proteobacteria,1RN4Y@1236|Gammaproteobacteria,1X4Q1@135614|Xanthomonadales 135614|Xanthomonadales C cytochrome petC - - ko:K00413 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002 - - - Cytochrom_C1 SRR25158195_k127_2057059_4 1316927.ATKI01000125_gene3800 5.367e-06 48.0 COG1290@1|root,COG1290@2|Bacteria,1MV97@1224|Proteobacteria,1RNCP@1236|Gammaproteobacteria,1YN1D@136843|Pseudomonas fluorescens group 1236|Gammaproteobacteria C Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis petB - - ko:K00412 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002,ko03029 - - - Cytochrom_B_C,Cytochrom_C1,Cytochrome_B SRR25158195_k127_2057284_0 522373.Smlt1019 2.125e-281 868.0 COG1305@1|root,COG1305@2|Bacteria,1MWCE@1224|Proteobacteria,1RPH9@1236|Gammaproteobacteria,1X3BD@135614|Xanthomonadales 135614|Xanthomonadales E Transglutaminase/protease-like homologues - - 2.3.2.13 ko:K22452 - - - - ko00000,ko01000 - - - DUF3488,DUF4129,Transglut_core SRR25158195_k127_2057284_2 935567.JAES01000030_gene2850 1.538e-113 379.0 COG1721@1|root,COG1721@2|Bacteria,1R3QD@1224|Proteobacteria,1S5F7@1236|Gammaproteobacteria,1X33K@135614|Xanthomonadales 135614|Xanthomonadales S conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - - - - - - - - - - DUF58 SRR25158195_k127_2057284_1 522373.Smlt1021 3.086e-186 585.0 COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,1RP45@1236|Gammaproteobacteria,1X53J@135614|Xanthomonadales 135614|Xanthomonadales S ATPase family associated with various cellular activities (AAA) - - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 SRR25158195_k127_2057284_3 391008.Smal_0865 2.863e-21 93.0 COG1807@1|root,COG1807@2|Bacteria,1N49T@1224|Proteobacteria,1T1N5@1236|Gammaproteobacteria,1X4WF@135614|Xanthomonadales 135614|Xanthomonadales M Dolichyl-phosphate-mannose-protein mannosyltransferase - - - - - - - - - - - - PMT_2 SRR25158195_k127_2058004_2 1429851.X548_13270 9.871e-59 203.0 COG2878@1|root,COG2878@2|Bacteria,1MUWU@1224|Proteobacteria,1RNSJ@1236|Gammaproteobacteria,1X6DN@135614|Xanthomonadales 135614|Xanthomonadales C Part of a membrane complex involved in electron transport ydgM - - ko:K03616 - - - - ko00000 - - - FeS,Fer4_21 SRR25158195_k127_2058004_1 522373.Smlt3501 4.938e-68 231.0 COG0251@1|root,COG0251@2|Bacteria,1MZ5K@1224|Proteobacteria,1S5WM@1236|Gammaproteobacteria,1X6UX@135614|Xanthomonadales 135614|Xanthomonadales J translation initiation inhibitor, yjgF family - - - - - - - - - - - - Ribonuc_L-PSP SRR25158195_k127_2058004_0 522373.Smlt3502 0.0 1584.0 COG0392@1|root,COG2898@1|root,COG0392@2|Bacteria,COG2898@2|Bacteria,1MXH9@1224|Proteobacteria,1RPQ6@1236|Gammaproteobacteria,1X52G@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - 2.3.2.3 ko:K14205 ko01503,ko02020,ko05150,map01503,map02020,map05150 M00726 - - ko00000,ko00001,ko00002,ko01000,ko01504 2.A.1.3.37 - - DUF2156,LPG_synthase_TM SRR25158195_k127_2058004_3 522373.Smlt3503 8.296e-13 67.0 COG3946@1|root,COG3946@2|Bacteria,1R7R5@1224|Proteobacteria,1RS2B@1236|Gammaproteobacteria,1XBZD@135614|Xanthomonadales 135614|Xanthomonadales U Bacterial virulence protein (VirJ) - - - - - - - - - - - - VirJ SRR25158195_k127_2069047_1 1205753.A989_09693 2.687e-22 106.0 COG1404@1|root,COG1404@2|Bacteria,1RDT6@1224|Proteobacteria,1S3CA@1236|Gammaproteobacteria,1XCA2@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the peptidase S8 family - - - - - - - - - - - - PPC,Peptidase_S8 SRR25158195_k127_2069047_0 1205753.A989_09698 2.437e-177 574.0 COG5295@1|root,COG5295@2|Bacteria,1N338@1224|Proteobacteria,1SZB9@1236|Gammaproteobacteria,1X5KI@135614|Xanthomonadales 135614|Xanthomonadales UW Head domain of trimeric autotransporter adhesin - - - - - - - - - - - - Collagen,YadA_anchor,YadA_head,YadA_stalk SRR25158195_k127_2072596_2 1429851.X548_10625 4.193e-43 157.0 COG4544@1|root,COG4544@2|Bacteria,1MZQU@1224|Proteobacteria,1S9RP@1236|Gammaproteobacteria,1X6M1@135614|Xanthomonadales 135614|Xanthomonadales S Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division - - - ko:K13053 - - - - ko00000,ko03036 - - - - SRR25158195_k127_2072596_1 1429851.X548_10630 4.752e-288 886.0 COG0389@1|root,COG0389@2|Bacteria,1MU5X@1224|Proteobacteria,1S28B@1236|Gammaproteobacteria,1X53G@135614|Xanthomonadales 135614|Xanthomonadales L Nucleotidyltransferase DNA polymerase involved in DNA repair - - - ko:K14161 - - - - ko00000,ko03400 - - - IMS SRR25158195_k127_2072596_0 522373.Smlt2928 0.0 1932.0 COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,1RQA8@1236|Gammaproteobacteria,1X3V7@135614|Xanthomonadales 135614|Xanthomonadales L DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase dnaE2 - 2.7.7.7 ko:K14162 - - - - ko00000,ko01000,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon SRR25158195_k127_2076775_1 1429851.X548_13295 7.248e-22 94.0 2F54Q@1|root,33XRS@2|Bacteria,1NVNV@1224|Proteobacteria,1T6V8@1236|Gammaproteobacteria,1X884@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF998) - - - - - - - - - - - - DUF998 SRR25158195_k127_2076775_0 522373.Smlt3503 8.277e-238 740.0 COG3946@1|root,COG3946@2|Bacteria,1R7R5@1224|Proteobacteria,1RS2B@1236|Gammaproteobacteria,1XBZD@135614|Xanthomonadales 135614|Xanthomonadales U Bacterial virulence protein (VirJ) - - - - - - - - - - - - VirJ SRR25158195_k127_2077815_0 59538.XP_005974689.1 6.775e-296 910.0 COG0277@1|root,KOG1232@2759|Eukaryota,38DBR@33154|Opisthokonta,3BFC0@33208|Metazoa,3CYB0@33213|Bilateria,48AJU@7711|Chordata,48X5Y@7742|Vertebrata,3J8XF@40674|Mammalia,4J4TC@91561|Cetartiodactyla 33208|Metazoa C D-2-hydroxyglutarate dehydrogenase - - 1.1.99.39 ko:K18204 - - - - ko00000,ko01000 - - - FAD-oxidase_C,FAD_binding_4 SRR25158195_k127_2077815_1 522373.Smlt2195 4.808e-283 870.0 COG0111@1|root,COG0111@2|Bacteria,1MU5Z@1224|Proteobacteria,1RPEY@1236|Gammaproteobacteria,1X4WZ@135614|Xanthomonadales 135614|Xanthomonadales EH Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family serA - 1.1.1.399,1.1.1.95 ko:K00058 ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 M00020 R01513 RC00031 ko00000,ko00001,ko00002,ko01000,ko04147 - - - 2-Hacid_dh,2-Hacid_dh_C,ACT SRR25158195_k127_2077815_2 1429851.X548_07800 1.515e-79 265.0 COG1051@1|root,COG1051@2|Bacteria,1RKG8@1224|Proteobacteria,1T15E@1236|Gammaproteobacteria,1XBWV@135614|Xanthomonadales 135614|Xanthomonadales F NUDIX domain - - - - - - - - - - - - NUDIX SRR25158195_k127_2077961_3 1118235.CAJH01000030_gene2081 4.978e-64 246.0 COG5295@1|root,COG5295@2|Bacteria 2|Bacteria UW Hep Hag repeat protein - - - ko:K21449 - - - - ko00000,ko02000 1.B.40.2 - - ESPR,YadA_anchor,YadA_head,YadA_stalk SRR25158195_k127_2077961_2 1118235.CAJH01000030_gene2082 7.749e-74 257.0 COG3121@1|root,COG3121@2|Bacteria,1RGBA@1224|Proteobacteria,1S5QN@1236|Gammaproteobacteria 1236|Gammaproteobacteria NU Chaperone - - - - - - - - - - - - PapD_N SRR25158195_k127_2077961_1 1429851.X548_14905 3.541e-97 332.0 2A77P@1|root,30W3V@2|Bacteria,1RE92@1224|Proteobacteria,1S5DK@1236|Gammaproteobacteria 1236|Gammaproteobacteria S CblD family pilus biogenesis initiator protein tcfD - - - - - - - - - - - CblD SRR25158195_k127_2077961_0 1429851.X548_14910 2.269e-249 787.0 COG3188@1|root,COG3188@2|Bacteria,1PTRC@1224|Proteobacteria,1S047@1236|Gammaproteobacteria 1236|Gammaproteobacteria NU E-set like domain cblC - - - - - - - - - - - CooC_C,TcfC,Usher_TcfC SRR25158195_k127_2079107_0 913325.N799_02340 0.0 1383.0 COG0187@1|root,COG0187@2|Bacteria,1MVKT@1224|Proteobacteria,1RNB2@1236|Gammaproteobacteria,1X51M@135614|Xanthomonadales 135614|Xanthomonadales L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrB - 5.99.1.3 ko:K02470 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim SRR25158195_k127_2079107_1 84531.JMTZ01000105_gene1664 1.428e-139 455.0 COG1195@1|root,COG1195@2|Bacteria,1MX8N@1224|Proteobacteria,1RN5P@1236|Gammaproteobacteria,1X3R9@135614|Xanthomonadales 135614|Xanthomonadales L it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP recF GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - ko:K03629 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - AAA_23,SMC_N SRR25158195_k127_2079107_2 1300345.LF41_3210 3.719e-131 420.0 COG0592@1|root,COG0592@2|Bacteria,1MVD9@1224|Proteobacteria,1RMNP@1236|Gammaproteobacteria,1X3F0@135614|Xanthomonadales 135614|Xanthomonadales L Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria dnaN - 2.7.7.7 ko:K02338 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_beta,DNA_pol3_beta_2,DNA_pol3_beta_3 SRR25158195_k127_2080533_2 84531.JMTZ01000086_gene1362 4.042e-07 59.0 COG5002@1|root,COG5002@2|Bacteria,1QTV1@1224|Proteobacteria,1T1I6@1236|Gammaproteobacteria,1X5MG@135614|Xanthomonadales 135614|Xanthomonadales T HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - 2.7.13.3 ko:K07644 ko02020,map02020 M00452,M00745 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko01504,ko02022 - - - HATPase_c,HisKA SRR25158195_k127_2080533_1 84531.JMTZ01000086_gene1363 1.46e-119 404.0 COG0745@1|root,COG0745@2|Bacteria,1MU67@1224|Proteobacteria,1RNWH@1236|Gammaproteobacteria,1X413@135614|Xanthomonadales 135614|Xanthomonadales T Transcriptional regulatory protein, C terminal - - - ko:K07665 ko02020,map02020 M00452,M00745 - - ko00000,ko00001,ko00002,ko01504,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_2080533_0 84531.JMTZ01000086_gene1364 0.0 1051.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X49G@135614|Xanthomonadales 135614|Xanthomonadales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K07788,ko:K21133 ko02020,map02020 M00648,M00822 - - ko00000,ko00001,ko00002,ko02000 2.A.6.2,2.A.6.2.35 - - ACR_tran SRR25158195_k127_2081749_0 522373.Smlt0237 0.0 1081.0 COG4770@1|root,COG4770@2|Bacteria,1P6RE@1224|Proteobacteria,1RM95@1236|Gammaproteobacteria,1X2ZC@135614|Xanthomonadales 135614|Xanthomonadales I carboxylase - - 6.4.1.4 ko:K01968 ko00280,ko01100,map00280,map01100 M00036 R04138 RC00367,RC00942 ko00000,ko00001,ko00002,ko01000 - - - Biotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2 SRR25158195_k127_2081749_1 1429851.X548_20135 4.403e-42 155.0 COG0778@1|root,COG0778@2|Bacteria,1PUI1@1224|Proteobacteria,1SH4S@1236|Gammaproteobacteria,1X5MA@135614|Xanthomonadales 135614|Xanthomonadales C Nitroreductase family - - - - - - - - - - - - Nitroreductase SRR25158195_k127_2092628_0 913325.N799_11010 0.0 1248.0 COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,1RN05@1236|Gammaproteobacteria,1X39C@135614|Xanthomonadales 135614|Xanthomonadales S Peptidase M16 - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C SRR25158195_k127_2092628_1 1385515.N791_06310 3.241e-37 146.0 2CEDU@1|root,333S9@2|Bacteria,1NI7T@1224|Proteobacteria,1T0VC@1236|Gammaproteobacteria,1X7FT@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4156) - - - - - - - - - - - - DUF4156 SRR25158195_k127_2100468_0 391008.Smal_2186 0.0 1729.0 COG1629@1|root,COG4772@1|root,COG1629@2|Bacteria,COG4772@2|Bacteria,1R4GA@1224|Proteobacteria,1RQNP@1236|Gammaproteobacteria,1X9JG@135614|Xanthomonadales 135614|Xanthomonadales P Secretin and TonB N terminus short domain - - - ko:K16087 - - - - ko00000,ko02000 1.B.14.2 - - Plug,TonB_dep_Rec SRR25158195_k127_2100468_2 391008.Smal_2185 9.017e-137 438.0 2AIMU@1|root,31946@2|Bacteria,1RH0K@1224|Proteobacteria,1S5Z6@1236|Gammaproteobacteria,1XAPJ@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - TbpB_B_D SRR25158195_k127_2100468_1 522373.Smlt2712 1.285e-258 809.0 COG3118@1|root,COG3118@2|Bacteria,1QSEX@1224|Proteobacteria,1RR0Y@1236|Gammaproteobacteria,1X9MF@135614|Xanthomonadales 135614|Xanthomonadales O Protein of unknown function (DUF560) - - - - - - - - - - - - DUF560 SRR25158195_k127_2100603_3 84531.JMTZ01000028_gene88 4.858e-86 291.0 COG2186@1|root,COG2186@2|Bacteria,1MV83@1224|Proteobacteria,1RSDC@1236|Gammaproteobacteria,1X65D@135614|Xanthomonadales 135614|Xanthomonadales K FCD - - - - - - - - - - - - FCD,GntR SRR25158195_k127_2100603_4 1163408.UU9_09702 6.882e-81 274.0 COG0800@1|root,COG0800@2|Bacteria,1RD0T@1224|Proteobacteria,1RQMK@1236|Gammaproteobacteria,1X6N3@135614|Xanthomonadales 135614|Xanthomonadales G Aldolase - - 4.1.2.21 ko:K01631 ko00052,ko01100,map00052,map01100 M00552 R01064 RC00307,RC00435 ko00000,ko00001,ko00002,ko01000 - - - Aldolase SRR25158195_k127_2100603_0 1163408.UU9_09707 1.307e-222 701.0 COG4948@1|root,COG4948@2|Bacteria,1MURK@1224|Proteobacteria,1RPIT@1236|Gammaproteobacteria,1X4XS@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the dehydration of D-galactonate to 2-keto-3- deoxy-D-galactonate dgoD - 4.2.1.6 ko:K01684 ko00052,ko01100,ko01120,map00052,map01100,map01120 M00552 R03033 RC00543 ko00000,ko00001,ko00002,ko01000 - - - MR_MLE_C,MR_MLE_N SRR25158195_k127_2100603_1 1163409.UUA_13450 4.945e-117 382.0 COG1028@1|root,COG1028@2|Bacteria,1MXTP@1224|Proteobacteria,1RYTY@1236|Gammaproteobacteria,1X66B@135614|Xanthomonadales 135614|Xanthomonadales IQ COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - - - - - - - - - - adh_short_C2 SRR25158195_k127_2100603_2 1163409.UUA_13455 4.27e-108 358.0 COG3386@1|root,COG3386@2|Bacteria,1MWTR@1224|Proteobacteria,1RSKQ@1236|Gammaproteobacteria,1X5QA@135614|Xanthomonadales 135614|Xanthomonadales G SMP-30/Gluconolaconase/LRE-like region - - 3.1.1.15 ko:K13874 ko00053,ko01100,map00053,map01100 - R02526 RC00537 ko00000,ko00001,ko01000 - - - SGL SRR25158195_k127_2101053_3 1169143.KB911034_gene1347 6.22e-10 63.0 COG0437@1|root,COG0437@2|Bacteria,1R6XQ@1224|Proteobacteria,2VZ46@28216|Betaproteobacteria,1K3TG@119060|Burkholderiaceae 28216|Betaproteobacteria C 4Fe-4S dicluster domain - - - - - - - - - - - - Fer4_11 SRR25158195_k127_2101053_2 1121033.AUCF01000002_gene582 4.144e-37 149.0 2CD0K@1|root,32V6E@2|Bacteria,1N4B2@1224|Proteobacteria,2UGDY@28211|Alphaproteobacteria 28211|Alphaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2101053_1 1366050.N234_27735 3.101e-83 296.0 COG2267@1|root,COG2267@2|Bacteria,1N03H@1224|Proteobacteria,2VM76@28216|Betaproteobacteria,1K4RR@119060|Burkholderiaceae 28216|Betaproteobacteria I Poly(3-hydroxyalkanoate) depolymerase - - 3.1.1.76 ko:K22250 - - - - ko00000,ko01000 - - - Abhydrolase_1 SRR25158195_k127_2101053_0 1268068.PG5_66330 7.698e-157 502.0 COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,1RPVQ@1236|Gammaproteobacteria 1236|Gammaproteobacteria I poly(R)-hydroxyalkanoic acid synthase phaC - - ko:K03821 ko00650,map00650 - R04254 RC00004 ko00000,ko00001,ko01000 - - - PhaC_N SRR25158195_k127_2105746_4 522373.Smlt3298 1.001e-43 159.0 COG1670@1|root,COG1670@2|Bacteria,1MXEE@1224|Proteobacteria,1S6UZ@1236|Gammaproteobacteria,1X67D@135614|Xanthomonadales 135614|Xanthomonadales J Acetyltransferases including N-acetylases of ribosomal proteins argA - - ko:K22479 - - - - ko00000 - - - Acetyltransf_3 SRR25158195_k127_2105746_2 522373.Smlt3297 2.127e-198 623.0 COG0002@1|root,COG0002@2|Bacteria,1MVJ6@1224|Proteobacteria,1RNMX@1236|Gammaproteobacteria,1X32E@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde argC - 1.2.1.38 ko:K00145 ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230 M00028,M00845 R03443 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Semialdhyde_dh,Semialdhyde_dhC SRR25158195_k127_2105746_0 391008.Smal_2723 1.982e-267 825.0 COG0165@1|root,COG0165@2|Bacteria,1MUTU@1224|Proteobacteria,1RMA3@1236|Gammaproteobacteria,1X33M@135614|Xanthomonadales 135614|Xanthomonadales E argininosuccinate lyase argH GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 ko:K01755 ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230 M00029,M00844,M00845 R01086 RC00445,RC00447 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ASL_C2,Lyase_1 SRR25158195_k127_2105746_5 391008.Smal_2722 1.424e-43 160.0 COG2350@1|root,COG2350@2|Bacteria,1QBAU@1224|Proteobacteria,1T6VA@1236|Gammaproteobacteria,1X889@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - YCII SRR25158195_k127_2105746_1 391008.Smal_2721 9.322e-224 696.0 COG0263@1|root,COG0263@2|Bacteria,1MUBG@1224|Proteobacteria,1RM7X@1236|Gammaproteobacteria,1X3A6@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate proB GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 ko:K00931 ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230 M00015 R00239 RC00002,RC00043 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,PUA SRR25158195_k127_2105746_3 1429851.X548_12090 3.198e-144 460.0 COG0014@1|root,COG0014@2|Bacteria,1MUGJ@1224|Proteobacteria,1RMAY@1236|Gammaproteobacteria,1X3E3@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate proA GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 ko:K00147 ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230 M00015 R03313 RC00684 ko00000,ko00001,ko00002,ko01000 - - - Aldedh SRR25158195_k127_2107110_0 522373.Smlt3773 0.0 1109.0 COG3240@1|root,COG5571@1|root,COG3240@2|Bacteria,COG5571@2|Bacteria,1MWDI@1224|Proteobacteria,1S2RQ@1236|Gammaproteobacteria,1X3QI@135614|Xanthomonadales 135614|Xanthomonadales IN esterase estA - - ko:K12686 - - - - ko00000,ko02000,ko02044 1.B.12.8 - - Autotransporter,Lipase_GDSL SRR25158195_k127_2107110_7 398578.Daci_4115 2.395e-06 57.0 2EIFY@1|root,33C7A@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - SPOR SRR25158195_k127_2107110_2 522373.Smlt3769 1.029e-179 570.0 COG0189@1|root,COG0189@2|Bacteria,1MX62@1224|Proteobacteria,1RM8B@1236|Gammaproteobacteria,1X3FM@135614|Xanthomonadales 135614|Xanthomonadales F Belongs to the RimK family rimK GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016874,GO:0016879,GO:0016881,GO:0018169,GO:0018410,GO:0019538,GO:0031668,GO:0033554,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070739,GO:0071496,GO:0071704,GO:0140096,GO:1901564 - ko:K05844 - - - - ko00000,ko01000,ko03009 - - - RimK SRR25158195_k127_2107110_3 1429851.X548_14595 2.491e-69 237.0 2AQJK@1|root,32BF4@2|Bacteria,1QBT0@1224|Proteobacteria,1T7D6@1236|Gammaproteobacteria,1X94N@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2107110_4 522373.Smlt3767 2.33e-65 228.0 2AQJK@1|root,31FSD@2|Bacteria,1QDHI@1224|Proteobacteria,1T9HZ@1236|Gammaproteobacteria,1X8BS@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2107110_5 1500893.JQNB01000001_gene3557 6.198e-52 192.0 COG0745@1|root,COG0745@2|Bacteria,1RA00@1224|Proteobacteria,1S23N@1236|Gammaproteobacteria,1X3BY@135614|Xanthomonadales 135614|Xanthomonadales K Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - Response_reg,Trans_reg_C SRR25158195_k127_2107110_1 522373.Smlt3765 3.163e-267 826.0 COG0642@1|root,COG0642@2|Bacteria,1R514@1224|Proteobacteria,1T1KV@1236|Gammaproteobacteria,1X3D5@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase colS - - - - - - - - - - - HATPase_c,HisKA SRR25158195_k127_2107771_3 522373.Smlt0585 1.303e-60 209.0 COG4206@1|root,COG4206@2|Bacteria,1MW63@1224|Proteobacteria,1RMFJ@1236|Gammaproteobacteria,1X3S1@135614|Xanthomonadales 135614|Xanthomonadales H receptor - - - ko:K16092 - - - - ko00000,ko02000 1.B.14.3 - - Plug,TonB_dep_Rec SRR25158195_k127_2107771_1 391008.Smal_0460 2.663e-125 419.0 COG0546@1|root,COG0546@2|Bacteria,1RDDY@1224|Proteobacteria,1S3QD@1236|Gammaproteobacteria,1X612@135614|Xanthomonadales 135614|Xanthomonadales G Phosphoglycolate phosphatase gph - 3.1.3.18 ko:K01091 ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130 - R01334 RC00017 ko00000,ko00001,ko01000 - - - HAD_2 SRR25158195_k127_2107771_0 522373.Smlt0582 6.346e-177 562.0 COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,1RPNX@1236|Gammaproteobacteria,1X4SN@135614|Xanthomonadales 135614|Xanthomonadales K LysR substrate binding domain - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2107771_2 391008.Smal_0457 8.424e-77 262.0 COG2910@1|root,COG2910@2|Bacteria,1MV9B@1224|Proteobacteria,1S0ZG@1236|Gammaproteobacteria,1X6VV@135614|Xanthomonadales 135614|Xanthomonadales S NADH-flavin reductase - - - ko:K07118 - - - - ko00000 - - - NAD_binding_10 SRR25158195_k127_2108231_1 522373.Smlt3358 2.242e-117 379.0 2DKZK@1|root,310GY@2|Bacteria,1NQ6H@1224|Proteobacteria,1TAA9@1236|Gammaproteobacteria,1X8NS@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3011) - - - - - - - - - - - - DUF3011 SRR25158195_k127_2108231_0 391008.Smal_2779 6.386e-148 470.0 COG1154@1|root,COG1154@2|Bacteria,1MUSJ@1224|Proteobacteria,1RNQD@1236|Gammaproteobacteria,1X2YR@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) dxs - 2.2.1.7 ko:K01662 ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130 M00096 R05636 RC00032 ko00000,ko00001,ko00002,ko01000 - - - DXP_synthase_N,Transket_pyr,Transketolase_C SRR25158195_k127_2110206_1 1429851.X548_17185 1.773e-12 67.0 COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,1RQ67@1236|Gammaproteobacteria,1X4GP@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family mtrC - - ko:K07799 ko02020,map02020 M00648 - - ko00000,ko00001,ko00002,ko02000 8.A.1 - - Biotin_lipoyl_2,HlyD_D23 SRR25158195_k127_2110206_0 391008.Smal_3690 0.0 1409.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X49G@135614|Xanthomonadales 135614|Xanthomonadales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K07788,ko:K21133 ko02020,map02020 M00648,M00822 - - ko00000,ko00001,ko00002,ko02000 2.A.6.2,2.A.6.2.35 - - ACR_tran SRR25158195_k127_2112745_0 682795.AciX8_1441 8.37e-07 61.0 COG1629@1|root,COG4771@2|Bacteria,3Y2GB@57723|Acidobacteria,2JP02@204432|Acidobacteriia 204432|Acidobacteriia P CarboxypepD_reg-like domain - - - - - - - - - - - - CarboxypepD_reg SRR25158195_k127_2113570_0 522373.Smlt0109 0.0 1206.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1MU7B@1224|Proteobacteria,1RN2W@1236|Gammaproteobacteria,1X465@135614|Xanthomonadales 135614|Xanthomonadales E Glutamate synthase gltB - 1.4.1.13,1.4.1.14 ko:K00265 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase SRR25158195_k127_2113570_4 1429851.X548_19515 9.374e-66 226.0 2DR05@1|root,339MI@2|Bacteria,1NHD4@1224|Proteobacteria,1SHK5@1236|Gammaproteobacteria,1X84Z@135614|Xanthomonadales 135614|Xanthomonadales S Peptidase inhibitor I78 family - - - - - - - - - - - - Inhibitor_I78 SRR25158195_k127_2113570_2 522373.Smlt0110 1.481e-197 629.0 COG3569@1|root,COG3569@2|Bacteria,1MVJ9@1224|Proteobacteria,1RQ4S@1236|Gammaproteobacteria,1XBZC@135614|Xanthomonadales 135614|Xanthomonadales L Eukaryotic DNA topoisomerase I, catalytic core - - - - - - - - - - - - Topoisom_I SRR25158195_k127_2113570_5 522373.Smlt2553 4.496e-45 167.0 2DJKR@1|root,32YT5@2|Bacteria,1NACC@1224|Proteobacteria,1ST3I@1236|Gammaproteobacteria,1X8AD@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2113570_1 1429851.X548_19530 7.371e-211 660.0 COG1028@1|root,COG1028@2|Bacteria,1MW9A@1224|Proteobacteria,1RMC9@1236|Gammaproteobacteria,1X3XA@135614|Xanthomonadales 135614|Xanthomonadales IQ Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - - - - - - - - - - adh_short_C2 SRR25158195_k127_2113570_3 522373.Smlt0115 4.75e-136 436.0 COG1680@1|root,COG1680@2|Bacteria,1QJH7@1224|Proteobacteria,1S0KP@1236|Gammaproteobacteria,1X3UV@135614|Xanthomonadales 135614|Xanthomonadales V Beta-lactamase - - - - - - - - - - - - Beta-lactamase SRR25158195_k127_2130159_2 1300345.LF41_2245 5.296e-35 136.0 COG4638@1|root,COG4638@2|Bacteria,1MWXW@1224|Proteobacteria,1S9NJ@1236|Gammaproteobacteria,1X5C8@135614|Xanthomonadales 135614|Xanthomonadales P COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - - 1.14.12.1 ko:K16319 ko00627,ko01120,map00627,map01120 M00637 R00823,R00825 RC00192 br01602,ko00000,ko00001,ko00002,ko01000 - - - Rieske,Ring_hydroxyl_A SRR25158195_k127_2130159_0 981384.AEYW01000001_gene1611 2.235e-157 512.0 COG5598@1|root,COG5598@2|Bacteria,1N18H@1224|Proteobacteria,2U1XN@28211|Alphaproteobacteria,4ND2J@97050|Ruegeria 28211|Alphaproteobacteria H Trimethylamine methyltransferase (MTTB) - - 2.1.1.250 ko:K14083 ko00680,ko01120,ko01200,map00680,map01120,map01200 M00563 R09124,R10016 RC00035,RC00732,RC01144,RC02984 ko00000,ko00001,ko00002,ko01000 - - - MTTB SRR25158195_k127_2130159_1 998674.ATTE01000001_gene278 6.152e-110 359.0 COG5012@1|root,COG5012@2|Bacteria,1QDZ3@1224|Proteobacteria,1RYST@1236|Gammaproteobacteria 1236|Gammaproteobacteria S B12 binding domain - - - - - - - - - - - - B12-binding,B12-binding_2 SRR25158195_k127_2130376_0 522373.Smlt2894 1.916e-184 579.0 COG1228@1|root,COG1228@2|Bacteria,1R40Z@1224|Proteobacteria,1S3FZ@1236|Gammaproteobacteria,1X54C@135614|Xanthomonadales 135614|Xanthomonadales Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1 SRR25158195_k127_2130376_2 522373.Smlt2895 1.477e-109 361.0 COG0666@1|root,COG0666@2|Bacteria,1N952@1224|Proteobacteria,1RPZA@1236|Gammaproteobacteria 1236|Gammaproteobacteria L ankyrin repeat - - - ko:K06867 - - - - ko00000 - - - Ank,Ank_2,Ank_4 SRR25158195_k127_2130376_1 391008.Smal_2346 1.971e-175 551.0 COG0583@1|root,COG0583@2|Bacteria,1R93Y@1224|Proteobacteria,1SYDT@1236|Gammaproteobacteria,1XCTW@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2130376_3 391008.Smal_2349 1.143e-16 79.0 COG3161@1|root,COG3161@2|Bacteria,1RDSK@1224|Proteobacteria,1SS9I@1236|Gammaproteobacteria,1X6R8@135614|Xanthomonadales 135614|Xanthomonadales H chorismate lyase activity - - - - - - - - - - - - - SRR25158195_k127_2142899_4 391008.Smal_0410 2.654e-22 96.0 COG3795@1|root,COG3795@2|Bacteria,1RCZT@1224|Proteobacteria,1S69N@1236|Gammaproteobacteria,1X6M5@135614|Xanthomonadales 135614|Xanthomonadales S YCII-related domain - - - - - - - - - - - - YCII SRR25158195_k127_2142899_1 1429851.X548_00570 9.725e-88 290.0 COG2764@1|root,COG2764@2|Bacteria,1N0S4@1224|Proteobacteria,1SA7P@1236|Gammaproteobacteria,1X7Y5@135614|Xanthomonadales 135614|Xanthomonadales S 3-demethylubiquinone-9 3-methyltransferase - - - ko:K04750 - - - - ko00000 - - - 3-dmu-9_3-mt SRR25158195_k127_2142899_2 1429851.X548_00575 1.482e-78 263.0 COG3607@1|root,COG3607@2|Bacteria,1RH1T@1224|Proteobacteria,1S6FE@1236|Gammaproteobacteria,1X739@135614|Xanthomonadales 135614|Xanthomonadales S glyoxalase bleomycin resistance protein dioxygenase - - - ko:K07032 - - - - ko00000 - - - - SRR25158195_k127_2142899_3 522373.Smlt0534 1.788e-71 242.0 COG5507@1|root,COG5507@2|Bacteria,1RHC1@1224|Proteobacteria,1S6KT@1236|Gammaproteobacteria,1X7NJ@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1428) - - - - - - - - - - - - DUF1428 SRR25158195_k127_2142899_0 522373.Smlt0535 3.236e-142 453.0 COG4941@1|root,COG4941@2|Bacteria,1MU3D@1224|Proteobacteria,1RN25@1236|Gammaproteobacteria,1X30Y@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily - - - - - - - - - - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_2146190_0 522373.Smlt2505 2.101e-132 424.0 COG2080@1|root,COG2080@2|Bacteria,1MY3F@1224|Proteobacteria,1SYEX@1236|Gammaproteobacteria,1X43B@135614|Xanthomonadales 135614|Xanthomonadales C oxidoreductase yagT - - ko:K13483 ko00230,ko01100,ko01120,map00230,map01100,map01120 M00546 R01768,R02103 RC00143 ko00000,ko00001,ko00002 - - - Fer2,Fer2_2 SRR25158195_k127_2146190_1 522373.Smlt2504 3.44e-122 396.0 COG1319@1|root,COG1319@2|Bacteria,1MVJS@1224|Proteobacteria,1RY6A@1236|Gammaproteobacteria,1X4ZU@135614|Xanthomonadales 135614|Xanthomonadales C Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM - - 1.17.1.4 ko:K11178 ko00230,ko01100,ko01120,map00230,map01100,map01120 M00546 R01768,R02103 RC00143 ko00000,ko00001,ko00002,ko01000 - - - CO_deh_flav_C,FAD_binding_5 SRR25158195_k127_2148271_0 522373.Smlt3732 0.0 1320.0 COG0542@1|root,COG0542@2|Bacteria,1MURH@1224|Proteobacteria,1RN55@1236|Gammaproteobacteria,1X499@135614|Xanthomonadales 135614|Xanthomonadales O Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE clpB - - ko:K03695 ko04213,map04213 - - - ko00000,ko00001,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N SRR25158195_k127_2151031_1 365046.Rta_28910 6.592e-34 132.0 2EIWR@1|root,33CN2@2|Bacteria,1NI5Y@1224|Proteobacteria,2VYR5@28216|Betaproteobacteria,4AIBR@80864|Comamonadaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2151031_0 1276756.AUEX01000014_gene2863 4.02e-149 475.0 COG0780@1|root,COG2904@1|root,COG0780@2|Bacteria,COG2904@2|Bacteria,1MW0M@1224|Proteobacteria,2VINU@28216|Betaproteobacteria,4AA88@80864|Comamonadaceae 28216|Betaproteobacteria F Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) queF - 1.7.1.13 ko:K06879,ko:K09457 ko00790,ko01100,map00790,map01100 - R07605 RC01875 ko00000,ko00001,ko01000,ko03016 - - - QueF,QueF_N SRR25158195_k127_2164614_5 391008.Smal_3490 1.71e-53 188.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X5H3@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the aldehyde dehydrogenase family xylC - 1.2.1.28,1.2.1.3 ko:K00128,ko:K00141 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00622,ko00623,ko00625,ko00627,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00622,map00623,map00625,map00627,map00903,map00981,map01100,map01110,map01120,map01130,map01220 M00135,M00537,M00538 R00264,R00631,R00710,R00904,R01293,R01419,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R05289,R05663,R05664,R06366,R07667,R08146 RC00047,RC00071,RC00075,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh SRR25158195_k127_2164614_0 391008.Smal_3489 4.986e-232 723.0 COG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,1RP71@1236|Gammaproteobacteria,1X5JW@135614|Xanthomonadales 135614|Xanthomonadales C COG1062 Zn-dependent alcohol dehydrogenases, class III - - 1.1.1.90 ko:K00055 ko00350,ko00360,ko00622,ko00623,ko01100,ko01120,ko01220,map00350,map00360,map00622,map00623,map01100,map01120,map01220 M00537,M00538 R01763,R02611,R04304,R05282,R05347,R05348 RC00087,RC00116 ko00000,ko00001,ko00002,ko01000 - - - ADH_N,ADH_zinc_N SRR25158195_k127_2164614_1 391008.Smal_3488 6.495e-202 634.0 COG3284@1|root,COG3284@2|Bacteria,1Q5BU@1224|Proteobacteria,1RWW4@1236|Gammaproteobacteria,1XA54@135614|Xanthomonadales 135614|Xanthomonadales KQ Bacterial regulatory protein, Fis family - - - - - - - - - - - - HTH_8 SRR25158195_k127_2164614_4 522373.Smlt4090 9.357e-94 308.0 COG1666@1|root,COG1666@2|Bacteria,1RDTF@1224|Proteobacteria,1S3RU@1236|Gammaproteobacteria,1X5Z3@135614|Xanthomonadales 135614|Xanthomonadales S Nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ yajQ - - ko:K09767 - - - - ko00000 - - - DUF520 SRR25158195_k127_2164614_2 522373.Smlt4089 1.201e-181 569.0 COG0697@1|root,COG0697@2|Bacteria,1MXPW@1224|Proteobacteria,1RZRW@1236|Gammaproteobacteria,1XC5Z@135614|Xanthomonadales 135614|Xanthomonadales EG EamA-like transporter family - - - - - - - - - - - - EamA SRR25158195_k127_2164614_3 522373.Smlt4088 1.84e-95 313.0 COG1135@1|root,COG1135@2|Bacteria,1QTTK@1224|Proteobacteria,1RMQD@1236|Gammaproteobacteria,1X51H@135614|Xanthomonadales 135614|Xanthomonadales P Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system metN - - ko:K02071 ko02010,map02010 M00238 - - ko00000,ko00001,ko00002,ko02000 3.A.1.24 - - ABC_tran,NIL SRR25158195_k127_216928_3 391008.Smal_2917 1.285e-32 126.0 COG2050@1|root,COG2050@2|Bacteria,1RH0Z@1224|Proteobacteria,1S5W6@1236|Gammaproteobacteria,1X6FN@135614|Xanthomonadales 135614|Xanthomonadales Q Domain of unknown function (DUF4442) - - - - - - - - - - - - DUF4442 SRR25158195_k127_216928_1 522373.Smlt3492 1.945e-134 430.0 COG2928@1|root,COG2928@2|Bacteria,1MWT5@1224|Proteobacteria,1S5DB@1236|Gammaproteobacteria,1X4XD@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF502) YH67_14670 - - - - - - - - - - - DUF502 SRR25158195_k127_216928_0 391008.Smal_2921 4.763e-158 501.0 COG1738@1|root,COG1738@2|Bacteria,1NIPE@1224|Proteobacteria,1S0J9@1236|Gammaproteobacteria,1X3D8@135614|Xanthomonadales 135614|Xanthomonadales U Involved in the import of queuosine (Q) precursors, required for Q precursor salvage - - - ko:K09125 - - - - ko00000 - - - Vut_1 SRR25158195_k127_216928_2 522373.Smlt3494 1.398e-84 284.0 COG4805@1|root,COG4805@2|Bacteria,1MUBX@1224|Proteobacteria,1RMT7@1236|Gammaproteobacteria,1X39Z@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - DUF885 SRR25158195_k127_2173717_2 391008.Smal_3439 6.817e-228 709.0 2EZVZ@1|root,33T0D@2|Bacteria,1NTS7@1224|Proteobacteria,1T7GA@1236|Gammaproteobacteria,1X98T@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2173717_4 391008.Smal_3438 1.467e-189 593.0 COG1023@1|root,COG1023@2|Bacteria,1QU14@1224|Proteobacteria,1T1KM@1236|Gammaproteobacteria,1X4EG@135614|Xanthomonadales 135614|Xanthomonadales G 6-phosphogluconate dehydrogenase gnd - 1.1.1.343,1.1.1.44 ko:K00033 ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200 M00004,M00006 R01528,R10221 RC00001,RC00539 ko00000,ko00001,ko00002,ko01000 - - - 6PGD,NAD_binding_2 SRR25158195_k127_2173717_3 391008.Smal_3437 1.548e-207 647.0 COG0673@1|root,COG0673@2|Bacteria,1MU8F@1224|Proteobacteria,1RNKY@1236|Gammaproteobacteria,1X4MJ@135614|Xanthomonadales 135614|Xanthomonadales S Oxidoreductase ydgJ - - - - - - - - - - - GFO_IDH_MocA,GFO_IDH_MocA_C SRR25158195_k127_2173717_6 1429851.X548_15830 8.208e-59 205.0 COG2823@1|root,COG2823@2|Bacteria,1PCIJ@1224|Proteobacteria,1RRGP@1236|Gammaproteobacteria,1X8M3@135614|Xanthomonadales 135614|Xanthomonadales S bacterial OsmY and nodulation domain - - - ko:K04065 - - - - ko00000 - - - BON SRR25158195_k127_2173717_0 522373.Smlt4039 0.0 1090.0 COG4251@1|root,COG4251@2|Bacteria,1NSQ1@1224|Proteobacteria,1RYUZ@1236|Gammaproteobacteria,1X504@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - CHASE3,HATPase_c,HisKA,PAS_4,PAS_8,Response_reg SRR25158195_k127_2173717_5 1429851.X548_15820 1.072e-85 287.0 COG0745@1|root,COG0745@2|Bacteria,1RD6H@1224|Proteobacteria,1S623@1236|Gammaproteobacteria,1X5ZG@135614|Xanthomonadales 135614|Xanthomonadales KT two-component system YH67_17215 - - ko:K02485 - - - - ko00000,ko02022 - - - Response_reg SRR25158195_k127_2173717_1 522373.Smlt4037 2.325e-300 924.0 COG0745@1|root,COG2204@1|root,COG4191@1|root,COG0745@2|Bacteria,COG2204@2|Bacteria,COG4191@2|Bacteria,1RFPE@1224|Proteobacteria,1SYEP@1236|Gammaproteobacteria,1X4M4@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,Response_reg SRR25158195_k127_2177267_2 522373.Smlt1360 6.253e-183 572.0 COG1622@1|root,COG1622@2|Bacteria,1MWHZ@1224|Proteobacteria,1RP4H@1236|Gammaproteobacteria,1X3HN@135614|Xanthomonadales 135614|Xanthomonadales C ubiquinol oxidase subunit cyoA - 1.10.3.10 ko:K02297 ko00190,ko01100,map00190,map01100 M00417 R11335 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.5 - - COX2,COX_ARM SRR25158195_k127_2177267_0 522373.Smlt1361 0.0 1353.0 COG0843@1|root,COG0843@2|Bacteria,1MU7S@1224|Proteobacteria,1RPC3@1236|Gammaproteobacteria,1X34C@135614|Xanthomonadales 135614|Xanthomonadales C Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B cyoB - 1.10.3.10 ko:K02298 ko00190,ko01100,map00190,map01100 M00417 R11335 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.5 - - COX1 SRR25158195_k127_2177267_3 522373.Smlt1362 5.214e-135 435.0 COG1845@1|root,COG1845@2|Bacteria,1MUCK@1224|Proteobacteria,1RN9D@1236|Gammaproteobacteria,1X4MW@135614|Xanthomonadales 135614|Xanthomonadales C cytochrome o ubiquinol oxidase subunit III cyoC - - ko:K02299 ko00190,ko01100,map00190,map01100 M00417 - - ko00000,ko00001,ko00002 3.D.4.5 - - COX3 SRR25158195_k127_2177267_4 522373.Smlt1363 1.137e-63 229.0 COG3125@1|root,COG3125@2|Bacteria,1RHE5@1224|Proteobacteria,1S6KQ@1236|Gammaproteobacteria,1X7FQ@135614|Xanthomonadales 135614|Xanthomonadales C cytochrome o ubiquinol oxidase subunit iv cyoD - - ko:K02300 ko00190,ko01100,map00190,map01100 M00417 - - ko00000,ko00001,ko00002 3.D.4.5 - - COX4_pro SRR25158195_k127_2177267_1 522373.Smlt1365 9.166e-235 728.0 COG3300@1|root,COG5001@1|root,COG3300@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X3PH@135614|Xanthomonadales 135614|Xanthomonadales T GGDEF domain - - 2.7.7.65 ko:K21023 ko02025,map02025 - - - ko00000,ko00001,ko01000 - - - EAL,GGDEF,HAMP,MHYT SRR25158195_k127_2180622_0 383407.XOC_1315 1.933e-256 812.0 COG3501@1|root,COG4253@1|root,COG3501@2|Bacteria,COG4253@2|Bacteria,1MU7Q@1224|Proteobacteria,1RN6G@1236|Gammaproteobacteria,1XCAW@135614|Xanthomonadales 135614|Xanthomonadales S Type IV secretion protein Rhs - - - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - DUF2345,Phage_GPD,T6SS_Vgr SRR25158195_k127_2180622_2 1429851.X548_10520 9.281e-57 204.0 2FHBR@1|root,34961@2|Bacteria,1P3RM@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2180622_3 391008.Smal_1069 1.008e-53 197.0 2EVHC@1|root,33NXR@2|Bacteria,1NJ9X@1224|Proteobacteria,1SGGY@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2180622_4 391008.Smal_1069 8.351e-20 100.0 2EVHC@1|root,33NXR@2|Bacteria,1NJ9X@1224|Proteobacteria,1SGGY@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2180622_1 1131451.O1K_00205 3.634e-116 382.0 COG2268@1|root,COG2268@2|Bacteria,1QUZT@1224|Proteobacteria,1T45J@1236|Gammaproteobacteria,1X6ID@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - - - - - - - - - - DUF2235 SRR25158195_k127_218746_1 522373.Smlt3843 6.802e-285 874.0 COG0243@1|root,COG3383@1|root,COG0243@2|Bacteria,COG3383@2|Bacteria,1MW3N@1224|Proteobacteria,1RN6N@1236|Gammaproteobacteria,1XCEY@135614|Xanthomonadales 135614|Xanthomonadales C Molydopterin dinucleotide binding domain - - 1.17.1.9 ko:K00123 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001,ko01000 - - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding SRR25158195_k127_218746_3 522373.Smlt3843 1.458e-125 404.0 COG0243@1|root,COG3383@1|root,COG0243@2|Bacteria,COG3383@2|Bacteria,1MW3N@1224|Proteobacteria,1RN6N@1236|Gammaproteobacteria,1XCEY@135614|Xanthomonadales 135614|Xanthomonadales C Molydopterin dinucleotide binding domain - - 1.17.1.9 ko:K00123 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001,ko01000 - - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding SRR25158195_k127_218746_2 522373.Smlt3842 6.779e-135 433.0 COG0194@1|root,COG0194@2|Bacteria,1MW92@1224|Proteobacteria,1RN09@1236|Gammaproteobacteria,1X4E7@135614|Xanthomonadales 135614|Xanthomonadales F Essential for recycling GMP and indirectly, cGMP gmk GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 ko:K00942 ko00230,ko01100,map00230,map01100 M00050 R00332,R02090 RC00002 ko00000,ko00001,ko00002,ko01000 - - - Guanylate_kin SRR25158195_k127_218746_4 1118235.CAJH01000022_gene1400 3.137e-53 188.0 COG1758@1|root,COG1758@2|Bacteria,1N6TX@1224|Proteobacteria,1SCSR@1236|Gammaproteobacteria,1X70M@135614|Xanthomonadales 135614|Xanthomonadales K Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits rpoZ - 2.7.7.6 ko:K03060 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb6 SRR25158195_k127_218746_0 522373.Smlt3840 0.0 1020.0 COG0317@1|root,COG0317@2|Bacteria,1MU44@1224|Proteobacteria,1RN3H@1236|Gammaproteobacteria,1X43I@135614|Xanthomonadales 135614|Xanthomonadales KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance spoT - 2.7.6.5,3.1.7.2 ko:K01139 ko00230,map00230 - R00336,R00429 RC00002,RC00078 ko00000,ko00001,ko01000,ko03009 - - - ACT_4,HD_4,RelA_SpoT,TGS SRR25158195_k127_2191974_1 391008.Smal_2398 1.798e-101 332.0 COG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,1S3CP@1236|Gammaproteobacteria,1XCH5@135614|Xanthomonadales 135614|Xanthomonadales K DJ-1/PfpI family - - - - - - - - - - - - DJ-1_PfpI,HTH_18 SRR25158195_k127_2191974_0 391008.Smal_2397 5.845e-133 427.0 COG0526@1|root,COG0682@1|root,COG0526@2|Bacteria,COG0682@2|Bacteria,1RAW3@1224|Proteobacteria,1S6ID@1236|Gammaproteobacteria,1X6MW@135614|Xanthomonadales 135614|Xanthomonadales CO Thioredoxin - - - - - - - - - - - - AhpC-TSA,Redoxin SRR25158195_k127_2196212_2 391008.Smal_1216 2.164e-23 100.0 2A8RY@1|root,30XUN@2|Bacteria,1QB7W@1224|Proteobacteria,1T6S5@1236|Gammaproteobacteria,1X8AJ@135614|Xanthomonadales 135614|Xanthomonadales S Ribosomal protein S31e - - - ko:K19033 - - - - br01610,ko00000,ko03011 - - - RPS31 SRR25158195_k127_2196212_1 391008.Smal_1215 1.795e-81 274.0 2E2R2@1|root,32XTN@2|Bacteria,1NHQU@1224|Proteobacteria,1S937@1236|Gammaproteobacteria,1XDIF@135614|Xanthomonadales 135614|Xanthomonadales S MerC mercury resistance protein - - - - - - - - - - - - MerC SRR25158195_k127_2196212_0 1429851.X548_04790 4.354e-137 439.0 COG4206@1|root,COG4206@2|Bacteria,1MUZG@1224|Proteobacteria,1RP7I@1236|Gammaproteobacteria,1X3BA@135614|Xanthomonadales 135614|Xanthomonadales H Outer membrane receptor proteins mostly Fe transport - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_2196411_2 1429851.X548_07920 2.148e-139 445.0 COG0289@1|root,COG0289@2|Bacteria,1MUCT@1224|Proteobacteria,1RMCZ@1236|Gammaproteobacteria,1X4Q0@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate dapB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 ko:K00215 ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00526,M00527 R04198,R04199 RC00478 ko00000,ko00001,ko00002,ko01000 - - - DapB_C,DapB_N SRR25158195_k127_2196411_1 522373.Smlt2216 1.215e-146 467.0 COG1028@1|root,COG1028@2|Bacteria,1ND2U@1224|Proteobacteria,1RZZH@1236|Gammaproteobacteria,1X5HF@135614|Xanthomonadales 135614|Xanthomonadales IQ dehydrogenase reductase - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 SRR25158195_k127_2196411_4 522373.Smlt2212 1.001e-41 156.0 2EGRI@1|root,33AHQ@2|Bacteria,1NNXK@1224|Proteobacteria,1SU8D@1236|Gammaproteobacteria,1X8E3@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2196411_0 1429851.X548_07900 0.0 1149.0 COG0370@1|root,COG0370@2|Bacteria,1MUZC@1224|Proteobacteria,1RME9@1236|Gammaproteobacteria,1X3K4@135614|Xanthomonadales 135614|Xanthomonadales P Ferrous iron transport protein B feoB - - ko:K04759 - - - - ko00000,ko02000 9.A.8.1 - - FeoB_C,FeoB_N,Gate SRR25158195_k127_2196411_3 391008.Smal_1803 2.916e-44 161.0 COG1918@1|root,COG1918@2|Bacteria,1NASN@1224|Proteobacteria,1SFH7@1236|Gammaproteobacteria,1XC9A@135614|Xanthomonadales 135614|Xanthomonadales P ferrous iron transport protein feoA - - ko:K04758 - - - - ko00000,ko02000 - - - FeoA SRR25158195_k127_2196603_2 1429851.X548_17560 3.598e-122 396.0 COG1368@1|root,COG1368@2|Bacteria,1MVCM@1224|Proteobacteria,1RNJ3@1236|Gammaproteobacteria,1X35K@135614|Xanthomonadales 135614|Xanthomonadales M Transfers a phosphoglycerol residue from phosphatidylglycerol to the membrane-bound nascent glucan backbones mdoB - 2.7.8.20 ko:K01002 ko01100,map01100 - - - ko00000,ko01000 - - - Sulfatase SRR25158195_k127_2196603_0 391008.Smal_3756 0.0 1065.0 COG0661@1|root,COG0661@2|Bacteria,1MU1Z@1224|Proteobacteria,1SZUM@1236|Gammaproteobacteria,1X325@135614|Xanthomonadales 135614|Xanthomonadales S ABC transporter substrate-binding protein - - - - - - - - - - - - ABC1 SRR25158195_k127_2196603_1 522373.Smlt4346 6.598e-175 552.0 COG2354@1|root,COG2354@2|Bacteria,1MVYU@1224|Proteobacteria,1RMUZ@1236|Gammaproteobacteria,1X3CV@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF808) - - - ko:K09781 - - - - ko00000 - - - DUF808 SRR25158195_k127_2198510_0 391008.Smal_1256 7.641e-212 659.0 COG1044@1|root,COG1044@2|Bacteria,1MUX6@1224|Proteobacteria,1RNYI@1236|Gammaproteobacteria,1X2Y9@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxD - 2.3.1.191 ko:K02536 ko00540,ko01100,map00540,map01100 M00060 R04550 RC00039,RC00166 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Hexapep,Hexapep_2,LpxD SRR25158195_k127_2198510_2 522373.Smlt1496 3.699e-90 299.0 COG0764@1|root,COG0764@2|Bacteria,1RH2T@1224|Proteobacteria,1S4J9@1236|Gammaproteobacteria,1X624@135614|Xanthomonadales 135614|Xanthomonadales I Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs fabZ - 4.2.1.59 ko:K02372 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121 RC00831,RC01095 ko00000,ko00001,ko00002,ko01000,ko01004 - - - FabA SRR25158195_k127_2198510_1 391008.Smal_1254 1.634e-141 449.0 COG1043@1|root,COG1043@2|Bacteria,1MUHQ@1224|Proteobacteria,1RPHB@1236|Gammaproteobacteria,1X4NK@135614|Xanthomonadales 135614|Xanthomonadales I Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxA - 2.3.1.129 ko:K00677 ko00540,ko01100,ko01503,map00540,map01100,map01503 M00060 R04567 RC00039,RC00055 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Acetyltransf_11,Hexapep SRR25158195_k127_2208025_3 391008.Smal_0078 5.979e-29 117.0 2DR05@1|root,339MI@2|Bacteria,1NHD4@1224|Proteobacteria,1SHK5@1236|Gammaproteobacteria,1X8RP@135614|Xanthomonadales 135614|Xanthomonadales S Peptidase inhibitor I78 family - - - - - - - - - - - - Inhibitor_I78 SRR25158195_k127_2208025_0 391008.Smal_0077 2.342e-298 927.0 COG4219@1|root,COG4219@2|Bacteria,1N96C@1224|Proteobacteria,1SWDG@1236|Gammaproteobacteria,1XCTJ@135614|Xanthomonadales 135614|Xanthomonadales KT BlaR1 peptidase M56 - - - - - - - - - - - - Peptidase_M56 SRR25158195_k127_2208025_2 522373.Smlt0116 2.843e-70 239.0 COG3682@1|root,COG3682@2|Bacteria,1N3JW@1224|Proteobacteria,1SB84@1236|Gammaproteobacteria,1X73E@135614|Xanthomonadales 135614|Xanthomonadales K Methicillin resistance protein mecI - - - - - - - - - - - Penicillinase_R SRR25158195_k127_2208025_4 522373.Smlt2554 1.714e-19 94.0 2EGRN@1|root,33AHU@2|Bacteria,1NG8J@1224|Proteobacteria,1SHXG@1236|Gammaproteobacteria,1X90J@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2208025_1 742159.HMPREF0004_4690 1.743e-75 259.0 28QCN@1|root,2ZCV5@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - SRR25158195_k127_2208025_6 522373.Smlt0115 0.000392 44.0 COG1680@1|root,COG1680@2|Bacteria,1QJH7@1224|Proteobacteria,1S0KP@1236|Gammaproteobacteria,1X3UV@135614|Xanthomonadales 135614|Xanthomonadales V Beta-lactamase - - - - - - - - - - - - Beta-lactamase SRR25158195_k127_2208333_4 522373.Smlt2101 3.164e-65 224.0 2B5YT@1|root,31YUV@2|Bacteria 2|Bacteria S Protein of unknown function (DUF3088) - - - - - - - - - - - - DUF3088 SRR25158195_k127_2208333_2 522373.Smlt2102 1.178e-186 592.0 COG2141@1|root,COG2141@2|Bacteria,1MVF0@1224|Proteobacteria,1RPK5@1236|Gammaproteobacteria,1X8VK@135614|Xanthomonadales 135614|Xanthomonadales C Luciferase-like monooxygenase - - - - - - - - - - - - Bac_luciferase SRR25158195_k127_2208333_0 391008.Smal_1697 3.433e-284 874.0 COG2141@1|root,COG2141@2|Bacteria,1MUVN@1224|Proteobacteria,1RQ78@1236|Gammaproteobacteria,1X5Q3@135614|Xanthomonadales 135614|Xanthomonadales C Nitrilotriacetate monooxygenase - - - - - - - - - - - - Bac_luciferase SRR25158195_k127_2208333_1 391008.Smal_1698 1.793e-233 728.0 COG1473@1|root,COG1473@2|Bacteria,1MUIV@1224|Proteobacteria,1RQAM@1236|Gammaproteobacteria,1X3CG@135614|Xanthomonadales 135614|Xanthomonadales S N-acyl-L-amino acid amidohydrolase - - 3.5.1.32 ko:K01451 ko00360,map00360 - R01424 RC00096,RC00162 ko00000,ko00001,ko01000,ko01002 - - - M20_dimer,Peptidase_M20 SRR25158195_k127_2208333_3 522373.Smlt2105 1.916e-78 265.0 COG0454@1|root,COG0456@2|Bacteria,1RDZZ@1224|Proteobacteria,1RY0D@1236|Gammaproteobacteria 1236|Gammaproteobacteria K N-acetyltransferase - - - ko:K03829 - - - - ko00000,ko01000 - - - Acetyltransf_1 SRR25158195_k127_2211300_3 1118235.CAJH01000004_gene223 5.781e-15 74.0 COG3296@1|root,COG3296@2|Bacteria,1N4ZK@1224|Proteobacteria,1SBG4@1236|Gammaproteobacteria,1X7HM@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4870) - - - ko:K09940 - - - - ko00000 - - - DUF4870 SRR25158195_k127_2211300_0 1429851.X548_13095 6.591e-163 518.0 COG0142@1|root,COG0142@2|Bacteria,1MWNG@1224|Proteobacteria,1RMKY@1236|Gammaproteobacteria,1X40B@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the FPP GGPP synthase family ispA - 2.5.1.1,2.5.1.10 ko:K00795 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00364 R01658,R02003 RC00279 ko00000,ko00001,ko00002,ko01000,ko01006 - - - polyprenyl_synt SRR25158195_k127_2211300_2 1444770.AF72_08830 6.559e-31 123.0 COG1722@1|root,COG1722@2|Bacteria,1N72V@1224|Proteobacteria,1SC7N@1236|Gammaproteobacteria,1X7MG@135614|Xanthomonadales 135614|Xanthomonadales L Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides xseB - 3.1.11.6 ko:K03602 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_VII_S SRR25158195_k127_2211300_1 391008.Smal_2892 3.462e-56 197.0 COG0037@1|root,COG0037@2|Bacteria,1MU85@1224|Proteobacteria,1RN14@1236|Gammaproteobacteria,1X3XY@135614|Xanthomonadales 135614|Xanthomonadales D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine tilS - 6.3.4.19 ko:K04075 - - R09597 RC02633,RC02634 ko00000,ko01000,ko03016 - - - ATP_bind_3,TilS,TilS_C SRR25158195_k127_2214833_1 522373.Smlt0439 4.432e-112 364.0 COG0385@1|root,COG0385@2|Bacteria,1MUMM@1224|Proteobacteria,1RN2S@1236|Gammaproteobacteria,1X4H2@135614|Xanthomonadales 135614|Xanthomonadales S Bile acid - - - ko:K14347 - - - - ko00000,ko02000,ko04147 2.A.93.1 - - SBF_like SRR25158195_k127_2214833_2 391008.Smal_0322 2.65e-92 304.0 COG3453@1|root,COG3453@2|Bacteria,1N919@1224|Proteobacteria,1SEMT@1236|Gammaproteobacteria,1X8A2@135614|Xanthomonadales 135614|Xanthomonadales S Putative phosphatase (DUF442) - - - - - - - - - - - - DUF442 SRR25158195_k127_2214833_0 522373.Smlt0441 2.927e-252 780.0 COG0358@1|root,COG0358@2|Bacteria,1MUHC@1224|Proteobacteria,1RMGA@1236|Gammaproteobacteria,1X4K0@135614|Xanthomonadales 135614|Xanthomonadales L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication dnaG - - ko:K02316 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB_bind,DnaG_DnaB_bind,Toprim_2,Toprim_4,Toprim_N,zf-CHC2 SRR25158195_k127_221504_1 522373.Smlt0013 7.931e-292 897.0 COG1502@1|root,COG1502@2|Bacteria,1MWUW@1224|Proteobacteria,1RPQG@1236|Gammaproteobacteria,1X48D@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol cls - - ko:K06131 ko00564,ko01100,map00564,map01100 - R07390 RC00017 ko00000,ko00001,ko01000 - - - PLDc_2,PLDc_N SRR25158195_k127_221504_4 391008.Smal_0013 2.204e-37 145.0 2A0YF@1|root,3028T@2|Bacteria,1QDDF@1224|Proteobacteria,1T9BN@1236|Gammaproteobacteria,1X853@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_221504_3 522373.Smlt0015 1.106e-152 483.0 COG0854@1|root,COG0854@2|Bacteria,1MU9W@1224|Proteobacteria,1RMS5@1236|Gammaproteobacteria,1X405@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate pdxJ GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 ko:K03474 ko00750,ko01100,map00750,map01100 M00124 R05838 RC01476 ko00000,ko00001,ko00002,ko01000 - - - PdxJ SRR25158195_k127_221504_2 391008.Smal_0015 3.622e-229 710.0 COG1533@1|root,COG1533@2|Bacteria,1MW0H@1224|Proteobacteria,1RQNF@1236|Gammaproteobacteria,1X3K1@135614|Xanthomonadales 135614|Xanthomonadales L DNA repair photolyase - - - - - - - - - - - - Radical_SAM SRR25158195_k127_221504_0 391008.Smal_0016 0.0 1040.0 COG3209@1|root,COG3209@2|Bacteria,1PFM0@1224|Proteobacteria,1TDYW@1236|Gammaproteobacteria,1X5V4@135614|Xanthomonadales 135614|Xanthomonadales M RHS Repeat - - - - - - - - - - - - RHS_repeat SRR25158195_k127_2230283_0 391008.Smal_1578 3.848e-210 657.0 COG1075@1|root,COG1075@2|Bacteria,1NYAK@1224|Proteobacteria,1RZ8D@1236|Gammaproteobacteria,1X5M2@135614|Xanthomonadales 135614|Xanthomonadales S Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_6,PGAP1 SRR25158195_k127_2230283_1 391008.Smal_1582 5.859e-68 231.0 COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,1RNB8@1236|Gammaproteobacteria,1X484@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the peptidase S8 family - - - ko:K14645 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002,ko03110 - - - Peptidase_S8 SRR25158195_k127_224360_3 1385517.N800_05320 8.306e-38 141.0 COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,1RNN0@1236|Gammaproteobacteria,1X3M5@135614|Xanthomonadales 135614|Xanthomonadales E aminotransferase - - 2.6.1.1 ko:K00812 ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230 - R00355,R00694,R00734,R00896,R02433,R02619,R05052 RC00006 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 SRR25158195_k127_224360_0 913325.N799_09655 1.129e-185 588.0 COG0039@1|root,COG0039@2|Bacteria,1MV57@1224|Proteobacteria,1RMAX@1236|Gammaproteobacteria,1X3NI@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the reversible oxidation of malate to oxaloacetate mdh GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072350,GO:0072524,GO:1901360,GO:1901564 1.1.1.37 ko:K00024 ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00012,M00168,M00173,M00346,M00374,M00620,M00740 R00342,R07136 RC00031 ko00000,ko00001,ko00002,ko01000 - - - Ldh_1_C,Ldh_1_N SRR25158195_k127_224360_1 1384054.N790_03130 1.184e-92 306.0 COG2513@1|root,COG2513@2|Bacteria,1N4VT@1224|Proteobacteria,1RMR5@1236|Gammaproteobacteria,1X3JB@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate prpB - 4.1.3.30 ko:K03417 ko00640,map00640 - R00409 RC00286,RC00287 ko00000,ko00001,ko01000 - - - PEP_mutase SRR25158195_k127_2249973_8 391008.Smal_1445 4.14e-50 183.0 COG1670@1|root,COG1670@2|Bacteria,1RKKE@1224|Proteobacteria,1S47R@1236|Gammaproteobacteria,1X7VY@135614|Xanthomonadales 135614|Xanthomonadales J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 SRR25158195_k127_2249973_0 522373.Smlt1709 0.0 1259.0 COG0187@1|root,COG0187@2|Bacteria,1MVH1@1224|Proteobacteria,1RMCI@1236|Gammaproteobacteria,1X3J8@135614|Xanthomonadales 135614|Xanthomonadales L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule parE - - ko:K02622 - - - - ko00000,ko01000,ko02048,ko03032,ko03036 - - - DNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim SRR25158195_k127_2249973_1 522373.Smlt1711 0.0 1109.0 COG0504@1|root,COG0504@2|Bacteria,1MUIT@1224|Proteobacteria,1RM92@1236|Gammaproteobacteria,1X4G4@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates pyrG - 6.3.4.2 ko:K01937 ko00240,ko01100,map00240,map01100 M00052 R00571,R00573 RC00010,RC00074 ko00000,ko00001,ko00002,ko01000 - - - CTP_synth_N,GATase SRR25158195_k127_2249973_2 522373.Smlt1715 6.569e-270 837.0 COG0148@1|root,COG0148@2|Bacteria,1MU1N@1224|Proteobacteria,1RNQA@1236|Gammaproteobacteria,1X2YM@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis eno - 4.2.1.11 ko:K01689 ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066 M00001,M00002,M00003,M00346,M00394 R00658 RC00349 ko00000,ko00001,ko00002,ko01000,ko03019,ko04147 - - - Enolase_C,Enolase_N SRR25158195_k127_2249973_7 1429851.X548_06060 2.272e-60 209.0 COG2919@1|root,COG2919@2|Bacteria,1N7AA@1224|Proteobacteria,1SD8H@1236|Gammaproteobacteria,1X7C1@135614|Xanthomonadales 135614|Xanthomonadales D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic ftsB - - ko:K05589 - - - - ko00000,ko03036 - - - DivIC SRR25158195_k127_2249973_4 1429851.X548_06065 3.86e-138 442.0 COG1211@1|root,COG1211@2|Bacteria,1MY3B@1224|Proteobacteria,1S21S@1236|Gammaproteobacteria,1X3QB@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) ispD GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 ko:K00991 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05633 RC00002 ko00000,ko00001,ko00002,ko01000 - - - IspD SRR25158195_k127_2249973_5 522373.Smlt1718 2.286e-97 322.0 COG0245@1|root,COG0245@2|Bacteria,1MVHA@1224|Proteobacteria,1S3RQ@1236|Gammaproteobacteria,1X5Z0@135614|Xanthomonadales 135614|Xanthomonadales I Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) ispF - 4.6.1.12 ko:K01770 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05637 RC00002,RC01440 ko00000,ko00001,ko00002,ko01000 - - - YgbB SRR25158195_k127_2249973_3 522373.Smlt1719 6.27e-207 646.0 COG0585@1|root,COG0585@2|Bacteria,1MXHD@1224|Proteobacteria,1RPRF@1236|Gammaproteobacteria,1X371@135614|Xanthomonadales 135614|Xanthomonadales J Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs truD GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 ko:K06176 - - - - ko00000,ko01000,ko03016 - - - TruD SRR25158195_k127_2249973_6 522373.Smlt1720 3.984e-96 315.0 COG2840@1|root,COG2840@2|Bacteria,1RH34@1224|Proteobacteria,1SASJ@1236|Gammaproteobacteria,1X63Q@135614|Xanthomonadales 135614|Xanthomonadales S SMR domain protein - - - - - - - - - - - - Smr SRR25158195_k127_2253069_6 1429851.X548_04765 4.075e-88 292.0 COG0008@1|root,COG0008@2|Bacteria,1MUCR@1224|Proteobacteria,1RN3R@1236|Gammaproteobacteria,1X3ZX@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) gltX - 6.1.1.17 ko:K01885 ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120 M00121,M00359,M00360 R05578 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016 - - - tRNA-synt_1c SRR25158195_k127_2253069_3 1429851.X548_04765 7.199e-201 626.0 COG0008@1|root,COG0008@2|Bacteria,1MUCR@1224|Proteobacteria,1RN3R@1236|Gammaproteobacteria,1X3ZX@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) gltX - 6.1.1.17 ko:K01885 ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120 M00121,M00359,M00360 R05578 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016 - - - tRNA-synt_1c SRR25158195_k127_2253069_5 391008.Smal_1210 1.069e-103 337.0 COG0735@1|root,COG0735@2|Bacteria,1MZIW@1224|Proteobacteria,1SADX@1236|Gammaproteobacteria,1X60C@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the Fur family zur - - ko:K09823 ko02024,map02024 - - - ko00000,ko00001,ko03000 - - - FUR SRR25158195_k127_2253069_2 391008.Smal_1211 6.206e-207 650.0 COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,1RRGJ@1236|Gammaproteobacteria,1X4J7@135614|Xanthomonadales 135614|Xanthomonadales V secretion protein - - - - - - - - - - - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 SRR25158195_k127_2253069_0 522373.Smlt1444 0.0 1064.0 COG0477@1|root,COG0477@2|Bacteria,1MW3B@1224|Proteobacteria,1RS7X@1236|Gammaproteobacteria,1X43S@135614|Xanthomonadales 135614|Xanthomonadales EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_2253069_4 522373.Smlt1445 8.492e-117 381.0 COG1309@1|root,COG1309@2|Bacteria,1N3HG@1224|Proteobacteria,1SSQ2@1236|Gammaproteobacteria,1X8BI@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - TetR_N SRR25158195_k127_2253069_1 522373.Smlt1446 3.445e-319 977.0 COG4206@1|root,COG4206@2|Bacteria,1MUZG@1224|Proteobacteria,1RP7I@1236|Gammaproteobacteria,1X3BA@135614|Xanthomonadales 135614|Xanthomonadales H Outer membrane receptor proteins mostly Fe transport - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_2257059_2 391008.Smal_0909 1.278e-36 138.0 COG0738@1|root,COG0738@2|Bacteria,1MVR9@1224|Proteobacteria,1RNEI@1236|Gammaproteobacteria,1X2YD@135614|Xanthomonadales 135614|Xanthomonadales G Major facilitator superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_2257059_0 391008.Smal_0908 1.352e-284 887.0 COG3182@1|root,COG3182@2|Bacteria,1MUX8@1224|Proteobacteria,1S33A@1236|Gammaproteobacteria,1X6M8@135614|Xanthomonadales 135614|Xanthomonadales S PepSY-associated TM region - - - - - - - - - - - - PepSY_TM SRR25158195_k127_2257059_1 391008.Smal_0907 1.434e-269 830.0 COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,1S1IP@1236|Gammaproteobacteria,1XCG9@135614|Xanthomonadales 135614|Xanthomonadales M TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_2263227_0 522373.Smlt0522 2.497e-181 572.0 COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,1RS6U@1236|Gammaproteobacteria,1X5HU@135614|Xanthomonadales 135614|Xanthomonadales K LysR family - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2263227_1 1429851.X548_00515 2.075e-69 242.0 COG0488@1|root,COG0488@2|Bacteria,1MV25@1224|Proteobacteria,1RNM9@1236|Gammaproteobacteria,1X42T@135614|Xanthomonadales 135614|Xanthomonadales S ABC transporter - - - - - - - - - - - - ABC_tran SRR25158195_k127_2265687_3 391008.Smal_2662 3.029e-141 452.0 COG2230@1|root,COG2230@2|Bacteria,1MX3U@1224|Proteobacteria,1RNID@1236|Gammaproteobacteria,1X41N@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge cfa - 2.1.1.79 ko:K00574 - - - - ko00000,ko01000 - - - CMAS SRR25158195_k127_2265687_1 391008.Smal_2663 4.513e-169 533.0 2ANQE@1|root,33DWW@2|Bacteria,1QZQA@1224|Proteobacteria,1T4A5@1236|Gammaproteobacteria,1XD9R@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4163) - - - - - - - - - - - - DUF3298,DUF4163 SRR25158195_k127_2265687_6 522373.Smlt3233 7.165e-57 200.0 COG2388@1|root,COG2388@2|Bacteria,1N8AQ@1224|Proteobacteria,1SH12@1236|Gammaproteobacteria,1X83J@135614|Xanthomonadales 135614|Xanthomonadales S acetyltransferase - - - ko:K06975 - - - - ko00000 - - - Acetyltransf_CG SRR25158195_k127_2265687_5 391008.Smal_2666 2.969e-130 418.0 COG0705@1|root,COG0705@2|Bacteria,1RB4A@1224|Proteobacteria,1S2UY@1236|Gammaproteobacteria,1X43K@135614|Xanthomonadales 135614|Xanthomonadales S membrane protein (homolog of Drosophila rhomboid) - - - - - - - - - - - - Rhomboid SRR25158195_k127_2265687_0 391008.Smal_2667 0.0 1027.0 COG3104@1|root,COG3104@2|Bacteria,1MW6W@1224|Proteobacteria,1RM8P@1236|Gammaproteobacteria,1X52H@135614|Xanthomonadales 135614|Xanthomonadales E Transporter ygdR - - ko:K03305 - - - - ko00000 2.A.17 - - PTR2 SRR25158195_k127_2265687_2 522373.Smlt3237 8.152e-157 498.0 COG3568@1|root,COG3568@2|Bacteria 2|Bacteria N Endonuclease Exonuclease Phosphatase - - - - - - - - - - - - 2_5_RNA_ligase2,Exo_endo_phos,PAP_central SRR25158195_k127_2265687_4 522373.Smlt3238 1.818e-135 432.0 COG0605@1|root,COG0605@2|Bacteria,1MV24@1224|Proteobacteria,1SZW5@1236|Gammaproteobacteria,1X5VQ@135614|Xanthomonadales 135614|Xanthomonadales C Destroys radicals which are normally produced within the cells and which are toxic to biological systems sodM - 1.15.1.1 ko:K04564 ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016 - - - ko00000,ko00001,ko01000 - - - Sod_Fe_C,Sod_Fe_N SRR25158195_k127_226727_2 522373.Smlt0008 1.063e-88 294.0 COG0457@1|root,COG0457@2|Bacteria,1MVH9@1224|Proteobacteria,1RQ3R@1236|Gammaproteobacteria,1X3F2@135614|Xanthomonadales 135614|Xanthomonadales S COG0457 FOG TPR repeat - - - - - - - - - - - - TPR_16,TPR_19,TPR_8 SRR25158195_k127_226727_0 391008.Smal_0006 4.392e-165 522.0 COG0501@1|root,COG0501@2|Bacteria,1MUNA@1224|Proteobacteria,1RMZ6@1236|Gammaproteobacteria,1X48E@135614|Xanthomonadales 135614|Xanthomonadales O peptidase - - - - - - - - - - - - Peptidase_M48 SRR25158195_k127_226727_1 1429851.X548_19140 5.448e-129 413.0 COG1266@1|root,COG1266@2|Bacteria,1NID0@1224|Proteobacteria,1RTEP@1236|Gammaproteobacteria,1X7CW@135614|Xanthomonadales 135614|Xanthomonadales S CAAX protease self-immunity - - - ko:K07052 - - - - ko00000 - - - Abi SRR25158195_k127_2269065_0 317013.NY99_02435 6.515e-177 556.0 COG1629@1|root,COG4771@2|Bacteria,1MW4X@1224|Proteobacteria,1RPVY@1236|Gammaproteobacteria,1X3CF@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor for ferrienterochelin and colicins - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec SRR25158195_k127_2269065_3 1429851.X548_17670 1.981e-109 357.0 2DWA9@1|root,33Z9U@2|Bacteria,1NKNG@1224|Proteobacteria,1SVH5@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Protein of unknown function (DUF998) - - - - - - - - - - - - DUF998 SRR25158195_k127_2269065_4 391008.Smal_3774 7.365e-84 279.0 2DK0G@1|root,30823@2|Bacteria,1RJF1@1224|Proteobacteria,1SBFQ@1236|Gammaproteobacteria,1X7N6@135614|Xanthomonadales 135614|Xanthomonadales S Rifampin ADP-ribosyl transferase - - - - - - - - - - - - Arr-ms SRR25158195_k127_2269065_6 522373.Smlt4371 9.59e-40 150.0 COG2960@1|root,COG2960@2|Bacteria,1N7AH@1224|Proteobacteria,1SCH1@1236|Gammaproteobacteria,1X7UU@135614|Xanthomonadales 135614|Xanthomonadales S Membrane fusogenic activity - - - ko:K09806 - - - - ko00000 - - - BMFP SRR25158195_k127_2269065_5 391008.Smal_3772 6.874e-63 220.0 COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,1S67I@1236|Gammaproteobacteria,1X6VI@135614|Xanthomonadales 135614|Xanthomonadales K at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA) glnB2 - - ko:K04751,ko:K04752 ko02020,map02020 - - - ko00000,ko00001 - - - P-II SRR25158195_k127_2269065_2 391008.Smal_3771 2.051e-131 421.0 COG0515@1|root,COG0515@2|Bacteria,1PCE7@1224|Proteobacteria,1SXE8@1236|Gammaproteobacteria,1X64N@135614|Xanthomonadales 135614|Xanthomonadales KLT serine threonine protein kinase - - - - - - - - - - - - APH,RIO1 SRR25158195_k127_2269065_1 1118235.CAJH01000042_gene2710 6.31e-175 556.0 COG3555@1|root,COG3555@2|Bacteria,1MW3M@1224|Proteobacteria,1RN80@1236|Gammaproteobacteria,1X3KN@135614|Xanthomonadales 135614|Xanthomonadales O aspartyl asparaginyl beta-hydroxylase aspH - - ko:K12979 - - - - ko00000,ko01000,ko01005 - - - Asp_Arg_Hydrox SRR25158195_k127_2274540_1 1134474.O59_001067 2.017e-39 166.0 2DMTX@1|root,32TP0@2|Bacteria,1N2JP@1224|Proteobacteria,1SB3B@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - Ntox24 SRR25158195_k127_2274540_2 383407.XOC_0096 8.381e-23 114.0 COG4104@1|root,COG4104@2|Bacteria,1N6T7@1224|Proteobacteria,1SDI3@1236|Gammaproteobacteria 1236|Gammaproteobacteria S PAAR motif - - - - - - - - - - - - PAAR_motif SRR25158195_k127_2274540_0 391008.Smal_1300 2.252e-119 385.0 COG0642@1|root,COG2205@2|Bacteria,1MUAK@1224|Proteobacteria,1RPP2@1236|Gammaproteobacteria,1X6C6@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - 2.7.13.3 ko:K02484 - - - - ko00000,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c SRR25158195_k127_2274573_0 1463881.KL591035_gene4926 1.156e-55 203.0 COG2519@1|root,COG2519@2|Bacteria,2GMKZ@201174|Actinobacteria 201174|Actinobacteria J Methyltransferase domain - - - - - - - - - - - - Methyltransf_31 SRR25158195_k127_2274573_1 1298863.AUEP01000020_gene3583 9.685e-36 141.0 COG3899@1|root,COG3899@2|Bacteria,2I2U4@201174|Actinobacteria,4DUP3@85009|Propionibacteriales 201174|Actinobacteria K AAA ATPase domain - - - - - - - - - - - - AAA_16,BTAD,DZR,GerE,Guanylate_cyc,Trans_reg_C SRR25158195_k127_2280588_1 1429851.X548_18310 6.393e-127 409.0 COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1XA4G@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - ko:K05874 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - HAMP,MCPsignal SRR25158195_k127_2280588_0 1429851.X548_18315 1.822e-176 554.0 COG0583@1|root,COG0583@2|Bacteria,1MU7H@1224|Proteobacteria,1RPF8@1236|Gammaproteobacteria,1X5FS@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2281151_8 391008.Smal_1592 1.261e-09 58.0 COG2914@1|root,COG2914@2|Bacteria,1MZCH@1224|Proteobacteria,1SCHG@1236|Gammaproteobacteria,1X84S@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0125 (RnfH) family - - - ko:K09801 - - - - ko00000 - - - Ub-RnfH SRR25158195_k127_2281151_7 522373.Smlt1985 6.261e-77 259.0 COG2913@1|root,COG2913@2|Bacteria,1N6YW@1224|Proteobacteria,1SCTT@1236|Gammaproteobacteria,1X6JC@135614|Xanthomonadales 135614|Xanthomonadales J Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamE - - ko:K06186 - - - - ko00000,ko02000 1.B.33.1 - - SmpA_OmlA SRR25158195_k127_2281151_6 1429851.X548_06780 4.258e-80 267.0 COG0735@1|root,COG0735@2|Bacteria,1RDWJ@1224|Proteobacteria,1S4H7@1236|Gammaproteobacteria,1X6F1@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the Fur family fur - - ko:K03711 - - - - ko00000,ko03000 - - - FUR SRR25158195_k127_2281151_3 1429851.X548_06790 1.025e-207 653.0 COG2755@1|root,COG2755@2|Bacteria,1MXBN@1224|Proteobacteria,1RQJF@1236|Gammaproteobacteria,1X4T4@135614|Xanthomonadales 135614|Xanthomonadales E GDSL-like Lipase/Acylhydrolase - - - - - - - - - - - - Lipase_GDSL_2 SRR25158195_k127_2281151_4 1429851.X548_06795 2.009e-175 552.0 COG0583@1|root,COG0583@2|Bacteria,1MU7H@1224|Proteobacteria,1RPF8@1236|Gammaproteobacteria,1X5FS@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2281151_1 391008.Smal_1597 0.0 1002.0 COG0497@1|root,COG0497@2|Bacteria,1MUNP@1224|Proteobacteria,1RNPZ@1236|Gammaproteobacteria,1X3M2@135614|Xanthomonadales 135614|Xanthomonadales L May be involved in recombinational repair of damaged DNA recN - - ko:K03631 - - - - ko00000,ko03400 - - - SMC_N SRR25158195_k127_2281151_2 391008.Smal_1598 9.151e-212 661.0 COG1420@1|root,COG1420@2|Bacteria,1MVX4@1224|Proteobacteria,1RR2F@1236|Gammaproteobacteria,1X44P@135614|Xanthomonadales 135614|Xanthomonadales K Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons hrcA - - ko:K03705 - - - - ko00000,ko03000 - - - HrcA,HrcA_DNA-bdg SRR25158195_k127_2281151_5 522373.Smlt1991 3.91e-95 313.0 COG0576@1|root,COG0576@2|Bacteria,1RH8T@1224|Proteobacteria,1S5W5@1236|Gammaproteobacteria,1X6HN@135614|Xanthomonadales 135614|Xanthomonadales O Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ grpE GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - ko:K03687 - - - - ko00000,ko03029,ko03110 - - - GrpE SRR25158195_k127_2281151_0 522373.Smlt1992 0.0 1112.0 COG0443@1|root,COG0443@2|Bacteria,1MVEN@1224|Proteobacteria,1RMDD@1236|Gammaproteobacteria,1X3SG@135614|Xanthomonadales 135614|Xanthomonadales O Heat shock 70 kDa protein dnaK - - ko:K04043 ko03018,ko04212,ko05152,map03018,map04212,map05152 - - - ko00000,ko00001,ko03019,ko03029,ko03110,ko04147 1.A.33.1 - - HSP70 SRR25158195_k127_2288011_0 391008.Smal_1774 9.652e-300 918.0 COG3537@1|root,COG3537@2|Bacteria,1MXCY@1224|Proteobacteria,1S0AN@1236|Gammaproteobacteria,1X3FY@135614|Xanthomonadales 135614|Xanthomonadales G Glycosyl hydrolase family 92 - - - - - - - - - - - - Glyco_hydro_92 SRR25158195_k127_2288011_3 391008.Smal_1775 1.448e-212 663.0 COG1609@1|root,COG1609@2|Bacteria,1MXUS@1224|Proteobacteria,1RQFT@1236|Gammaproteobacteria,1X458@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 SRR25158195_k127_2288011_2 391008.Smal_1776 9.112e-258 805.0 COG0738@1|root,COG0738@2|Bacteria,1MXDC@1224|Proteobacteria,1RQX9@1236|Gammaproteobacteria,1X4VB@135614|Xanthomonadales 135614|Xanthomonadales G transporter fucP - - ko:K02429 - - - - ko00000,ko02000 2.A.1.7 - - MFS_1 SRR25158195_k127_2288011_4 522373.Smlt2183 5.425e-187 590.0 COG0524@1|root,COG0524@2|Bacteria,1MX38@1224|Proteobacteria,1RRWT@1236|Gammaproteobacteria,1X36V@135614|Xanthomonadales 135614|Xanthomonadales G fructokinase scrK - 2.7.1.4 ko:K00847 ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100 - R00760,R00867,R03920 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PfkB SRR25158195_k127_2288011_1 391008.Smal_1778 1.416e-282 871.0 COG2942@1|root,COG2942@2|Bacteria,1MX1J@1224|Proteobacteria,1RSCF@1236|Gammaproteobacteria,1X4TE@135614|Xanthomonadales 135614|Xanthomonadales G N-acylglucosamine 2-epimerase - - - - - - - - - - - - GlcNAc_2-epim SRR25158195_k127_2288011_5 522373.Smlt2185 2.632e-49 178.0 COG3250@1|root,COG3250@2|Bacteria,1NYBH@1224|Proteobacteria,1RZPC@1236|Gammaproteobacteria,1XCMD@135614|Xanthomonadales 135614|Xanthomonadales G Glycosyl hydrolases family 2 - - 3.2.1.25 ko:K01192 ko00511,ko04142,map00511,map04142 - - - ko00000,ko00001,ko01000 - - - Glyco_hydro_2,Glyco_hydro_2_C SRR25158195_k127_2300308_3 1429851.X548_05230 6.16e-33 134.0 COG0745@1|root,COG0745@2|Bacteria,1MWJG@1224|Proteobacteria,1RPU3@1236|Gammaproteobacteria,1XCFH@135614|Xanthomonadales 135614|Xanthomonadales T Transcriptional regulatory protein, C terminal VL23_22270 - - ko:K02483 - - - - ko00000,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_2300308_2 522373.Smlt1539 1.872e-224 700.0 COG0845@1|root,COG0845@2|Bacteria,1MU8D@1224|Proteobacteria,1RN0E@1236|Gammaproteobacteria,1X5W6@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K02005,ko:K13888 - M00709 - - ko00000,ko00002,ko02000 8.A.1 - - HlyD_3,HlyD_D23 SRR25158195_k127_2300308_0 391008.Smal_1297 0.0 1211.0 COG0577@1|root,COG1136@1|root,COG0577@2|Bacteria,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,1RNUJ@1236|Gammaproteobacteria,1XD96@135614|Xanthomonadales 135614|Xanthomonadales V Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides macB - - ko:K05685 ko02010,map02010 M00709 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.122.1,3.A.1.122.12 - - ABC_tran,FtsX,MacB_PCD SRR25158195_k127_2300308_1 391008.Smal_1296 7.202e-271 842.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,1RMDA@1236|Gammaproteobacteria,1X3EU@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane efflux protein - - - - - - - - - - - - OEP SRR25158195_k127_2300308_4 391008.Smal_1295 2.952e-18 83.0 COG0566@1|root,COG0566@2|Bacteria,1MWCM@1224|Proteobacteria,1RN2F@1236|Gammaproteobacteria,1X3TR@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the ribose of guanosine 2251 in 23S rRNA rlmB GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.185 ko:K03218 - - - - ko00000,ko01000,ko03009 - - - SpoU_methylase,SpoU_sub_bind SRR25158195_k127_2305277_3 391008.Smal_0862 2.595e-85 283.0 COG1305@1|root,COG1305@2|Bacteria,1MWCE@1224|Proteobacteria,1RPH9@1236|Gammaproteobacteria,1X3BD@135614|Xanthomonadales 135614|Xanthomonadales E Transglutaminase/protease-like homologues - - 2.3.2.13 ko:K22452 - - - - ko00000,ko01000 - - - DUF3488,DUF4129,Transglut_core SRR25158195_k127_2305277_2 522373.Smlt1018 1.299e-108 360.0 COG3065@1|root,COG3065@2|Bacteria,1MZ8C@1224|Proteobacteria,1S9UB@1236|Gammaproteobacteria,1X64R@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane lipoprotein slp - - ko:K07285 - - - - ko00000 - - - Slp SRR25158195_k127_2305277_4 522373.Smlt1017 1.009e-68 234.0 COG0537@1|root,COG0537@2|Bacteria,1RDCJ@1224|Proteobacteria,1S3QE@1236|Gammaproteobacteria,1X72T@135614|Xanthomonadales 135614|Xanthomonadales FG Histidine triad (HIT) protein - - - ko:K02503 - - - - ko00000,ko04147 - - - HIT SRR25158195_k127_2305277_1 522373.Smlt1016 5.525e-118 381.0 COG0353@1|root,COG0353@2|Bacteria,1MV9Q@1224|Proteobacteria,1RN99@1236|Gammaproteobacteria,1X30Z@135614|Xanthomonadales 135614|Xanthomonadales L May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO recR - - ko:K06187 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - RecR,Toprim_4 SRR25158195_k127_2305277_5 391008.Smal_0858 3.585e-58 202.0 COG0718@1|root,COG0718@2|Bacteria,1RGZD@1224|Proteobacteria,1S5WU@1236|Gammaproteobacteria,1X71S@135614|Xanthomonadales 135614|Xanthomonadales S Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection - - - ko:K09747 - - - - ko00000 - - - YbaB_DNA_bd SRR25158195_k127_2305277_0 522373.Smlt1014 8.828e-226 707.0 COG2812@1|root,COG2812@2|Bacteria,1MVCK@1224|Proteobacteria,1RMIA@1236|Gammaproteobacteria,1X32S@135614|Xanthomonadales 135614|Xanthomonadales L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity dnaX - 2.7.7.7 ko:K02343 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_delta2,DNA_pol3_gamma3,DNA_pol3_tau_5 SRR25158195_k127_2312847_0 323848.Nmul_A1212 8.193e-73 248.0 COG0755@1|root,COG0755@2|Bacteria,1MU61@1224|Proteobacteria,2VHF8@28216|Betaproteobacteria,3729C@32003|Nitrosomonadales 28216|Betaproteobacteria U Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes ccmC - - ko:K02195 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko02000 3.A.1.107 - - Cytochrom_C_asm SRR25158195_k127_2312847_3 1304883.KI912532_gene1028 3.389e-10 69.0 COG3114@1|root,COG3114@2|Bacteria,1NGBM@1224|Proteobacteria,2VY2T@28216|Betaproteobacteria,2KXK6@206389|Rhodocyclales 206389|Rhodocyclales U Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes - - - ko:K02196 ko02010,map02010 - - - ko00000,ko00001,ko02000 3.A.1.107 - - CcmD SRR25158195_k127_2312847_1 452638.Pnec_1379 6.71e-57 201.0 COG2332@1|root,COG2332@2|Bacteria,1RHN5@1224|Proteobacteria,2VRKZ@28216|Betaproteobacteria,1K8MK@119060|Burkholderiaceae 28216|Betaproteobacteria O Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH ccmE - - ko:K02197 - - - - ko00000 - - - CcmE SRR25158195_k127_2312847_2 1123255.JHYS01000011_gene1246 2.13e-55 205.0 COG0526@1|root,COG0526@2|Bacteria,1RI3N@1224|Proteobacteria,2VR8D@28216|Betaproteobacteria,4AE83@80864|Comamonadaceae 28216|Betaproteobacteria CO Redoxin dsbE - - ko:K02199 - - - - ko00000,ko03110 - - - AhpC-TSA,Redoxin SRR25158195_k127_2314302_1 391008.Smal_3267 1.39e-180 567.0 COG0709@1|root,COG0709@2|Bacteria,1MWFG@1224|Proteobacteria,1RQ5Q@1236|Gammaproteobacteria,1X692@135614|Xanthomonadales 135614|Xanthomonadales H Synthesizes selenophosphate from selenide and ATP selD - 2.7.9.3 ko:K01008 ko00450,ko01100,map00450,map01100 - R03595 RC00002,RC02878 ko00000,ko00001,ko01000,ko03016 - - - AIRS,AIRS_C SRR25158195_k127_2314302_2 522373.Smlt3854 6.014e-169 534.0 COG1561@1|root,COG1561@2|Bacteria,1MWRA@1224|Proteobacteria,1RMAB@1236|Gammaproteobacteria,1X4G5@135614|Xanthomonadales 135614|Xanthomonadales S stress-induced protein - - - - - - - - - - - - DUF1732,YicC_N SRR25158195_k127_2314302_3 522373.Smlt3855 1.268e-150 477.0 COG0689@1|root,COG0689@2|Bacteria,1MVFZ@1224|Proteobacteria,1RNTB@1236|Gammaproteobacteria,1X3QU@135614|Xanthomonadales 135614|Xanthomonadales J Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates rph GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 ko:K00989 - - - - ko00000,ko01000,ko03016 - - - RNase_PH,RNase_PH_C SRR25158195_k127_2314302_6 391008.Smal_3271 1.416e-79 267.0 COG0346@1|root,COG0346@2|Bacteria,1RGTU@1224|Proteobacteria,1SGKB@1236|Gammaproteobacteria,1X7R1@135614|Xanthomonadales 135614|Xanthomonadales E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase SRR25158195_k127_2314302_4 522373.Smlt3857 4.238e-118 387.0 COG0127@1|root,COG0127@2|Bacteria,1MUK5@1224|Proteobacteria,1S27C@1236|Gammaproteobacteria,1X4DK@135614|Xanthomonadales 135614|Xanthomonadales F Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions rdgB GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 ko:K02428 ko00230,map00230 - R00426,R00720,R01855,R02100,R02720,R03531 RC00002 ko00000,ko00001,ko01000 - - - Acetyltransf_1,Ham1p_like SRR25158195_k127_2314302_0 391008.Smal_3273 1.166e-273 850.0 COG0635@1|root,COG0635@2|Bacteria,1MU76@1224|Proteobacteria,1RN6I@1236|Gammaproteobacteria,1X32N@135614|Xanthomonadales 135614|Xanthomonadales H Involved in the biosynthesis of porphyrin-containing compound - - - - - - - - - - - - HemN_C,Radical_SAM SRR25158195_k127_2314302_5 522373.Smlt3859 1.645e-114 373.0 COG3170@1|root,COG3170@2|Bacteria,1QV1N@1224|Proteobacteria,1T261@1236|Gammaproteobacteria,1XDAB@135614|Xanthomonadales 135614|Xanthomonadales NU Protein of unknown function (DUF1631) - - - - - - - - - - - - DUF1631 SRR25158195_k127_2315092_0 1429851.X548_04070 1.264e-316 983.0 COG1506@1|root,COG1506@2|Bacteria,1MUJ3@1224|Proteobacteria,1RPAW@1236|Gammaproteobacteria,1X45I@135614|Xanthomonadales 135614|Xanthomonadales E peptidase - - - - - - - - - - - - Peptidase_S9 SRR25158195_k127_2315092_2 391008.Smal_1086 6.496e-124 400.0 COG1279@1|root,COG1279@2|Bacteria,1RD6B@1224|Proteobacteria,1RR03@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Involved in the export of arginine. Important to control the intracellular level of arginine and the correct balance between arginine and lysine - - - ko:K06895 - - - - ko00000,ko02000 2.A.75.1 - - LysE SRR25158195_k127_2315092_1 391008.Smal_1085 1.628e-189 593.0 COG0583@1|root,COG0583@2|Bacteria,1MWUP@1224|Proteobacteria,1RNIC@1236|Gammaproteobacteria,1X9RV@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - ko:K05596 - - - - ko00000,ko03000,ko03036 - - - HTH_1,LysR_substrate SRR25158195_k127_2315092_3 1429851.X548_04050 1.654e-109 355.0 29CEM@1|root,31IGT@2|Bacteria,1QG5S@1224|Proteobacteria,1T8HP@1236|Gammaproteobacteria,1XAR2@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2315092_4 1429851.X548_04045 5.177e-53 194.0 COG0454@1|root,COG0456@2|Bacteria,1RI5Z@1224|Proteobacteria,1S6TI@1236|Gammaproteobacteria 1236|Gammaproteobacteria K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_10 SRR25158195_k127_2317903_2 522373.Smlt3632 6.613e-192 601.0 COG2267@1|root,COG2267@2|Bacteria,1MZG8@1224|Proteobacteria,1RMW1@1236|Gammaproteobacteria,1XD9V@135614|Xanthomonadales 135614|Xanthomonadales I Serine aminopeptidase, S33 - - - - - - - - - - - - Abhydrolase_1 SRR25158195_k127_2317903_1 391008.Smal_3047 7.265e-302 926.0 COG1760@1|root,COG1760@2|Bacteria,1MUZN@1224|Proteobacteria,1RMJZ@1236|Gammaproteobacteria,1X3P1@135614|Xanthomonadales 135614|Xanthomonadales E Serine dehydratase sdaA - 4.3.1.17 ko:K01752 ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230 - R00220,R00590 RC00331,RC02600 ko00000,ko00001,ko01000 - - - SDH_alpha,SDH_beta SRR25158195_k127_2317903_7 1429851.X548_13870 3.29e-35 147.0 COG0526@1|root,33ARA@2|Bacteria,1QV59@1224|Proteobacteria,1T28Y@1236|Gammaproteobacteria,1XD7W@135614|Xanthomonadales 135614|Xanthomonadales CO Glutaredoxin-like domain (DUF836) - - - - - - - - - - - - DUF836 SRR25158195_k127_2317903_5 391008.Smal_3045 1.152e-112 364.0 COG2353@1|root,COG2353@2|Bacteria,1R5CT@1224|Proteobacteria,1SG12@1236|Gammaproteobacteria,1X6BJ@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0312 family - - - - - - - - - - - - YceI SRR25158195_k127_2317903_3 1429851.X548_13860 3.462e-120 392.0 COG3038@1|root,COG3038@2|Bacteria,1MZ7X@1224|Proteobacteria,1S9N2@1236|Gammaproteobacteria,1XCN3@135614|Xanthomonadales 135614|Xanthomonadales C Cytochrome B561 - - - ko:K12262 - - - - ko00000 - - - Ni_hydr_CYTB SRR25158195_k127_2317903_4 391008.Smal_3043 1.712e-119 388.0 COG2353@1|root,COG2353@2|Bacteria,1RHEW@1224|Proteobacteria,1S6XG@1236|Gammaproteobacteria,1XAA9@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0312 family - - - - - - - - - - - - YceI SRR25158195_k127_2317903_0 391008.Smal_3042 0.0 2114.0 COG0642@1|root,COG3292@1|root,COG2205@2|Bacteria,COG3292@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1X4Y5@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,Reg_prop,Response_reg,Y_Y_Y SRR25158195_k127_2317903_6 391008.Smal_3041 2.004e-91 305.0 COG0642@1|root,COG0784@1|root,COG3292@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,COG3292@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1X4Y5@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,Reg_prop,Response_reg,Y_Y_Y SRR25158195_k127_2322892_0 1429851.X548_07055 0.0 1047.0 COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,1RPCU@1236|Gammaproteobacteria,1X49W@135614|Xanthomonadales 135614|Xanthomonadales S mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth uup - - ko:K15738 - - - - ko00000,ko02000 3.A.1.120.6 - - ABC_tran,ABC_tran_CTD,ABC_tran_Xtn SRR25158195_k127_2322892_1 391008.Smal_1631 4.884e-66 226.0 COG0583@1|root,COG0583@2|Bacteria,1MWVU@1224|Proteobacteria,1RPT8@1236|Gammaproteobacteria,1X3T2@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2328925_3 1429851.X548_11215 1.098e-42 156.0 COG2986@1|root,COG2986@2|Bacteria,1MU6K@1224|Proteobacteria,1RP02@1236|Gammaproteobacteria,1X39J@135614|Xanthomonadales 135614|Xanthomonadales E Histidine ammonia-lyase hutH - 4.3.1.3 ko:K01745 ko00340,ko01100,map00340,map01100 M00045 R01168 RC00361 ko00000,ko00001,ko00002,ko01000 - - - Lyase_aromatic SRR25158195_k127_2328925_1 522373.Smlt3109 1.14e-191 601.0 COG3741@1|root,COG3741@2|Bacteria,1MY4D@1224|Proteobacteria,1RUSZ@1236|Gammaproteobacteria,1X5E2@135614|Xanthomonadales 135614|Xanthomonadales E N-formylglutamate amidohydrolase hutG - 3.5.1.68,3.5.3.8 ko:K01458,ko:K01479 ko00340,ko00630,ko01100,map00340,map00630,map01100 M00045 R00525,R02285 RC00165,RC00221,RC00323,RC00681 ko00000,ko00001,ko00002,ko01000 - - - FGase SRR25158195_k127_2328925_0 522373.Smlt3110 0.0 1137.0 COG2987@1|root,COG2987@2|Bacteria,1MU4W@1224|Proteobacteria,1RP89@1236|Gammaproteobacteria,1X3IN@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate hutU - 4.2.1.49 ko:K01712 ko00340,ko01100,map00340,map01100 M00045 R02914 RC00804 ko00000,ko00001,ko00002,ko01000 - - - Urocanase,Urocanase_C,Urocanase_N SRR25158195_k127_2328925_2 391008.Smal_2553 7.341e-163 515.0 COG1680@1|root,COG1680@2|Bacteria,1RBCE@1224|Proteobacteria,1SZ6Z@1236|Gammaproteobacteria,1X69Q@135614|Xanthomonadales 135614|Xanthomonadales V Beta-lactamase - - - - - - - - - - - - Beta-lactamase SRR25158195_k127_2336009_0 391008.Smal_2637 8.468e-297 915.0 COG0305@1|root,COG0305@2|Bacteria,1MUG9@1224|Proteobacteria,1RPM2@1236|Gammaproteobacteria,1X3P0@135614|Xanthomonadales 135614|Xanthomonadales L it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins dnaB - 3.6.4.12 ko:K02314 ko03030,ko04112,map03030,map04112 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB,DnaB_C SRR25158195_k127_2336009_1 522373.Smlt3205 8.978e-46 165.0 COG0431@1|root,COG0431@2|Bacteria,1RAFI@1224|Proteobacteria,1S4DC@1236|Gammaproteobacteria,1XCN9@135614|Xanthomonadales 135614|Xanthomonadales S NAD(P)H-dependent FMN reductase - - - ko:K19784 - - - - ko00000 - - - FMN_red SRR25158195_k127_234004_2 522373.Smlt0123 5.118e-63 218.0 28HMG@1|root,2Z7W1@2|Bacteria,1P7NH@1224|Proteobacteria,1T14M@1236|Gammaproteobacteria,1XD31@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_234004_1 1429851.X548_19570 3.377e-73 251.0 29E4Z@1|root,3012W@2|Bacteria,1QCW8@1224|Proteobacteria,1T8PW@1236|Gammaproteobacteria,1XB26@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_234004_0 391008.Smal_0080 0.0 1647.0 COG1111@1|root,COG1205@1|root,COG1111@2|Bacteria,COG1205@2|Bacteria,1QU0I@1224|Proteobacteria,1S0XD@1236|Gammaproteobacteria,1X3W6@135614|Xanthomonadales 135614|Xanthomonadales L Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster - - - ko:K06877 - - - - ko00000 - - - DEAD,DUF1998,Helicase_C SRR25158195_k127_234004_3 391008.Smal_0079 5.906e-55 221.0 COG3359@1|root,COG3359@2|Bacteria,1R5KG@1224|Proteobacteria,1RY3P@1236|Gammaproteobacteria,1X4BF@135614|Xanthomonadales 135614|Xanthomonadales L exonuclease - - - ko:K07502 - - - - ko00000 - - - RNase_H_2 SRR25158195_k127_2340547_1 522373.Smlt1023 2.446e-67 230.0 COG0424@1|root,COG0424@2|Bacteria,1RDA9@1224|Proteobacteria,1S3TQ@1236|Gammaproteobacteria,1X6HJ@135614|Xanthomonadales 135614|Xanthomonadales D Maf-like protein - - - ko:K06287 - - - - ko00000 - - - Maf SRR25158195_k127_2340547_0 391008.Smal_0865 0.0 1124.0 COG1807@1|root,COG1807@2|Bacteria,1N49T@1224|Proteobacteria,1T1N5@1236|Gammaproteobacteria,1X4WF@135614|Xanthomonadales 135614|Xanthomonadales M Dolichyl-phosphate-mannose-protein mannosyltransferase - - - - - - - - - - - - PMT_2 SRR25158195_k127_2344886_2 391008.Smal_2204 3.187e-19 87.0 COG2165@1|root,COG2165@2|Bacteria 2|Bacteria NU general secretion pathway protein gspI - - ko:K02456,ko:K02458,ko:K02459 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSI SRR25158195_k127_2344886_1 391008.Smal_2205 6.554e-106 348.0 COG2165@1|root,COG2165@2|Bacteria,1NQDK@1224|Proteobacteria,1T49Z@1236|Gammaproteobacteria 1236|Gammaproteobacteria U Prokaryotic N-terminal methylation motif - - - ko:K02459 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl SRR25158195_k127_2344886_0 522373.Smlt2737 0.0 2441.0 COG2911@1|root,COG2911@2|Bacteria,1QXZF@1224|Proteobacteria,1T4A0@1236|Gammaproteobacteria,1XD9H@135614|Xanthomonadales 135614|Xanthomonadales S Filamentous haemagglutinin family outer membrane protein - - - - - - - - - - - - DUF3739,Haemagg_act SRR25158195_k127_2345912_0 391008.Smal_2110 0.0 1422.0 COG4773@1|root,COG4773@2|Bacteria,1QTXJ@1224|Proteobacteria,1T2K9@1236|Gammaproteobacteria,1XD9B@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_2345912_1 391008.Smal_2111 2.947e-101 334.0 COG1309@1|root,COG1309@2|Bacteria,1RARJ@1224|Proteobacteria,1RYD5@1236|Gammaproteobacteria,1X7IN@135614|Xanthomonadales 135614|Xanthomonadales K BetI-type transcriptional repressor, C-terminal - - - - - - - - - - - - TetR_C_6,TetR_N SRR25158195_k127_2345912_3 522373.Smlt2632 1.146e-46 170.0 COG0053@1|root,COG0053@2|Bacteria,1MVH8@1224|Proteobacteria,1RQ3E@1236|Gammaproteobacteria,1X42A@135614|Xanthomonadales 135614|Xanthomonadales P Co Zn Cd cation transporters catA - - - - - - - - - - - Cation_efflux SRR25158195_k127_2348906_2 287.DR97_5970 1.954e-136 438.0 COG0845@1|root,COG0845@2|Bacteria,1MUI8@1224|Proteobacteria,1RNK4@1236|Gammaproteobacteria,1YDTN@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria M HlyD family secretion protein prsE - - ko:K02022,ko:K12542 - M00330 - - ko00000,ko00002,ko02000,ko02044 3.A.1.109.4,8.A.1 - - Biotin_lipoyl_2,HlyD,HlyD_3 SRR25158195_k127_2348906_0 522373.Smlt2893 2.966e-170 539.0 COG0583@1|root,COG0583@2|Bacteria,1MU4C@1224|Proteobacteria,1RY6W@1236|Gammaproteobacteria,1X79H@135614|Xanthomonadales 135614|Xanthomonadales K LysR substrate binding domain - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2348906_1 522373.Smlt2892 1.313e-154 492.0 COG0477@1|root,COG2814@2|Bacteria,1MVVW@1224|Proteobacteria,1RQCE@1236|Gammaproteobacteria,1XC6Q@135614|Xanthomonadales 135614|Xanthomonadales EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_2349921_3 522373.Smlt1611 1.033e-107 350.0 COG0157@1|root,COG0157@2|Bacteria,1MW0C@1224|Proteobacteria,1RMBU@1236|Gammaproteobacteria,1X36W@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the NadC ModD family nadC - 2.4.2.19 ko:K00767 ko00760,ko01100,map00760,map01100 M00115 R03348 RC02877 ko00000,ko00001,ko00002,ko01000 - - - QRPTase_C,QRPTase_N SRR25158195_k127_2349921_8 522373.Smlt1612 2.252e-49 177.0 COG2835@1|root,COG2835@2|Bacteria,1P6IM@1224|Proteobacteria,1SV7D@1236|Gammaproteobacteria,1X7IE@135614|Xanthomonadales 135614|Xanthomonadales S Trm112p-like protein - - - - - - - - - - - - Trm112p SRR25158195_k127_2349921_4 522373.Smlt1613 9.349e-95 311.0 COG0041@1|root,COG0041@2|Bacteria,1RCWJ@1224|Proteobacteria,1S3VN@1236|Gammaproteobacteria,1X58Z@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) purE - 5.4.99.18 ko:K01588 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R07405 RC01947 ko00000,ko00001,ko00002,ko01000 - - - AIRC SRR25158195_k127_2349921_0 391008.Smal_1371 5.077e-227 712.0 COG0026@1|root,COG0026@2|Bacteria,1MU70@1224|Proteobacteria,1RQEI@1236|Gammaproteobacteria,1X31G@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) purK - 6.3.4.18 ko:K01589 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R07404 RC01927 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp SRR25158195_k127_2349921_6 391008.Smal_1372 7.064e-61 211.0 COG0599@1|root,COG0599@2|Bacteria,1MZ80@1224|Proteobacteria,1S54K@1236|Gammaproteobacteria,1XC6W@135614|Xanthomonadales 135614|Xanthomonadales S Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - - - - - - - - - - CMD SRR25158195_k127_2349921_2 391008.Smal_1373 1.282e-124 400.0 COG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,1RP7X@1236|Gammaproteobacteria,1X3PD@135614|Xanthomonadales 135614|Xanthomonadales P Destroys radicals which are normally produced within the cells and which are toxic to biological systems sodB - 1.15.1.1 ko:K04564 ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016 - - - ko00000,ko00001,ko01000 - - - Sod_Fe_C,Sod_Fe_N SRR25158195_k127_2349921_7 391008.Smal_1374 3.902e-59 206.0 COG0278@1|root,COG0278@2|Bacteria,1MZ4V@1224|Proteobacteria,1S640@1236|Gammaproteobacteria,1X6V3@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the glutaredoxin family. Monothiol subfamily grxD - - ko:K07390 - - - - ko00000,ko03029,ko03110 - - - Glutaredoxin SRR25158195_k127_2349921_1 391008.Smal_1375 7.755e-142 473.0 COG1028@1|root,COG1028@2|Bacteria,1MWBC@1224|Proteobacteria,1RNNV@1236|Gammaproteobacteria,1X3SZ@135614|Xanthomonadales 135614|Xanthomonadales IQ short-chain dehydrogenase - - - - - - - - - - - - adh_short,adh_short_C2 SRR25158195_k127_2349921_5 522373.Smlt1619 4.283e-78 262.0 COG1629@1|root,COG4771@2|Bacteria,1N6JG@1224|Proteobacteria,1RP10@1236|Gammaproteobacteria,1X3ZY@135614|Xanthomonadales 135614|Xanthomonadales P Oar protein - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec SRR25158195_k127_2364126_3 1429851.X548_18740 7.164e-132 420.0 COG3203@1|root,COG3203@2|Bacteria,1MX4Q@1224|Proteobacteria,1RY5B@1236|Gammaproteobacteria,1X3S0@135614|Xanthomonadales 135614|Xanthomonadales M Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - - - - - - - - - - - SRR25158195_k127_2364126_0 522373.Smlt4621 0.0 1065.0 COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,1S174@1236|Gammaproteobacteria,1X3HQ@135614|Xanthomonadales 135614|Xanthomonadales EGP COG0477 Permeases of the major facilitator superfamily - - - - - - - - - - - - Sugar_tr SRR25158195_k127_2364126_1 522373.Smlt4620 1.85e-288 891.0 COG1012@1|root,COG1012@2|Bacteria,1MVGW@1224|Proteobacteria,1RN53@1236|Gammaproteobacteria,1X3Z9@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the aldehyde dehydrogenase family - - 1.2.1.68 ko:K00154 - - - - ko00000,ko01000 - - - Aldedh SRR25158195_k127_2364126_2 391008.Smal_3970 7.448e-168 527.0 COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,1RN4H@1236|Gammaproteobacteria,1X303@135614|Xanthomonadales 135614|Xanthomonadales L exodeoxyribonuclease III xthA2 - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos SRR25158195_k127_2364126_4 1429851.X548_18715 1.643e-119 385.0 COG2091@1|root,COG2091@2|Bacteria,1MZHC@1224|Proteobacteria,1S466@1236|Gammaproteobacteria,1X71D@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the P-Pant transferase superfamily hetI - - ko:K06133 ko00770,map00770 - R01625 RC00002 ko00000,ko00001,ko01000 - - - ACPS SRR25158195_k127_2364126_6 522373.Smlt4616 4.28e-25 105.0 COG0357@1|root,COG0357@2|Bacteria,1MY0K@1224|Proteobacteria,1RMRZ@1236|Gammaproteobacteria,1X4ZH@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the N7 position of guanine in position 527 of 16S rRNA rsmG GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 ko:K03501 - - - - ko00000,ko01000,ko03009,ko03036 - - - GidB SRR25158195_k127_2366657_4 1429851.X548_11195 2.453e-15 75.0 COG1787@1|root,COG1787@2|Bacteria,1PCR5@1224|Proteobacteria,1SXVX@1236|Gammaproteobacteria,1X6VQ@135614|Xanthomonadales 135614|Xanthomonadales V Restriction endonuclease - - - - - - - - - - - - Mrr_cat SRR25158195_k127_2366657_3 391008.Smal_2547 4.503e-153 484.0 COG2188@1|root,COG2188@2|Bacteria,1MVFM@1224|Proteobacteria,1RNPE@1236|Gammaproteobacteria,1X6YQ@135614|Xanthomonadales 135614|Xanthomonadales K histidine utilization repressor hutC - - ko:K05836 - - - - ko00000,ko03000 - - - GntR,UTRA SRR25158195_k127_2366657_0 391008.Smal_2548 2.718e-270 835.0 COG0402@1|root,COG0402@2|Bacteria,1MUFE@1224|Proteobacteria,1RMZR@1236|Gammaproteobacteria,1X37N@135614|Xanthomonadales 135614|Xanthomonadales F deiminase sdeB - 3.5.3.13 ko:K05603 ko00340,map00340 - R02286 RC00682 ko00000,ko00001,ko01000 - - - Amidohydro_1 SRR25158195_k127_2366657_2 522373.Smlt3107 1.551e-251 778.0 COG1228@1|root,COG1228@2|Bacteria,1MUYR@1224|Proteobacteria,1RMI9@1236|Gammaproteobacteria,1X31E@135614|Xanthomonadales 135614|Xanthomonadales Q Imidazolone-5-propionate hydrolase hutI - 3.5.2.7 ko:K01468 ko00340,ko01100,map00340,map01100 M00045 R02288 RC00683 ko00000,ko00001,ko00002,ko01000 - - - Amidohydro_1,Amidohydro_3 SRR25158195_k127_2366657_1 391008.Smal_2550 6.747e-253 790.0 COG2986@1|root,COG2986@2|Bacteria,1MU6K@1224|Proteobacteria,1RP02@1236|Gammaproteobacteria,1X39J@135614|Xanthomonadales 135614|Xanthomonadales E Histidine ammonia-lyase hutH - 4.3.1.3 ko:K01745 ko00340,ko01100,map00340,map01100 M00045 R01168 RC00361 ko00000,ko00001,ko00002,ko01000 - - - Lyase_aromatic SRR25158195_k127_2367686_0 522373.Smlt3687 0.0 1988.0 COG1643@1|root,COG1643@2|Bacteria,1MUEQ@1224|Proteobacteria,1RMU1@1236|Gammaproteobacteria,1X3EJ@135614|Xanthomonadales 135614|Xanthomonadales L Helicase hrpA - 3.6.4.13 ko:K03578 - - - - ko00000,ko01000 - - - AAA_22,DEAD,DUF3418,HA2,Helicase_C,OB_NTP_bind SRR25158195_k127_2367686_1 522373.Smlt3688 7.209e-104 338.0 COG0783@1|root,COG0783@2|Bacteria,1RAC5@1224|Proteobacteria,1S2H7@1236|Gammaproteobacteria,1X5BT@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the Dps family dpsA - - ko:K04047 - - - - ko00000,ko03036 - - - Ferritin SRR25158195_k127_2371970_0 391008.Smal_0351 1.497e-305 940.0 COG1391@1|root,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,1RP9N@1236|Gammaproteobacteria,1X38Z@135614|Xanthomonadales 135614|Xanthomonadales H Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell glnE GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090 2.7.7.42,2.7.7.89 ko:K00982 - - - - ko00000,ko01000 - - - GlnD_UR_UTase,GlnE SRR25158195_k127_2371970_1 391008.Smal_0352 1.534e-107 349.0 COG1738@1|root,COG1738@2|Bacteria,1MVQU@1224|Proteobacteria,1RNX0@1236|Gammaproteobacteria,1X88U@135614|Xanthomonadales 135614|Xanthomonadales U Involved in the import of queuosine (Q) precursors, required for Q precursor salvage - - - ko:K09125 - - - - ko00000 - - - Vut_1 SRR25158195_k127_2379763_2 391008.Smal_2577 7.948e-137 439.0 COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,1RN5D@1236|Gammaproteobacteria,1X42W@135614|Xanthomonadales 135614|Xanthomonadales G Glucose dehydrogenase gcd1 - 1.1.5.2 ko:K00117 ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130 - R06620 RC00066 ko00000,ko00001,ko01000 - - - PQQ,PQQ_2 SRR25158195_k127_2379763_0 522373.Smlt3137 0.0 1733.0 COG0188@1|root,COG0188@2|Bacteria,1MUGG@1224|Proteobacteria,1RN03@1236|Gammaproteobacteria,1X31R@135614|Xanthomonadales 135614|Xanthomonadales L A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner gyrA - 5.99.1.3 ko:K02469 - - - - ko00000,ko01000,ko03032,ko03400 - - - DNA_gyraseA_C,DNA_topoisoIV SRR25158195_k127_2379763_1 522373.Smlt3138 2.847e-215 674.0 COG0182@1|root,COG0182@2|Bacteria,1MUPM@1224|Proteobacteria,1RMGC@1236|Gammaproteobacteria,1X4U3@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) mtnA GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 ko:K08963 ko00270,ko01100,map00270,map01100 M00034 R04420 RC01151 ko00000,ko00001,ko00002,ko01000 - - - IF-2B SRR25158195_k127_2379763_3 391008.Smal_2580 4.681e-121 389.0 2DKZK@1|root,310GY@2|Bacteria,1NQ6H@1224|Proteobacteria,1SSKG@1236|Gammaproteobacteria,1X6D8@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3011) - - - - - - - - - - - - DUF3011 SRR25158195_k127_2380858_2 522373.Smlt2039 4.064e-134 427.0 COG2957@1|root,COG2957@2|Bacteria,1MX65@1224|Proteobacteria,1RMF1@1236|Gammaproteobacteria,1X4DS@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the agmatine deiminase family - - - - - - - - - - - - PAD_porph SRR25158195_k127_2380858_0 391008.Smal_1641 1.54e-192 606.0 COG0388@1|root,COG0388@2|Bacteria,1MXG5@1224|Proteobacteria,1RP7S@1236|Gammaproteobacteria,1X3G8@135614|Xanthomonadales 135614|Xanthomonadales S Acyltransferase VL23_19915 - 3.5.1.53 ko:K12251 ko00330,ko01100,map00330,map01100 - R01152 RC00096 ko00000,ko00001,ko01000 - - - CN_hydrolase SRR25158195_k127_2380858_3 84531.JMTZ01000022_gene4150 1.082e-61 221.0 COG1247@1|root,COG1247@2|Bacteria,1RDHN@1224|Proteobacteria,1S44T@1236|Gammaproteobacteria,1X6KW@135614|Xanthomonadales 135614|Xanthomonadales M phosphinothricin pat - 2.3.1.183 ko:K03823 ko00440,ko01130,map00440,map01130 - R08871,R08938 RC00004,RC00064 ko00000,ko00001,ko01000 - - - Acetyltransf_4 SRR25158195_k127_2380858_1 1429851.X548_07085 5.989e-173 547.0 COG1916@1|root,COG1916@2|Bacteria,1MWJ0@1224|Proteobacteria,1RPND@1236|Gammaproteobacteria,1X3HV@135614|Xanthomonadales 135614|Xanthomonadales M trab family traB - - - - - - - - - - - TraB SRR25158195_k127_2382583_3 522373.Smlt4330 2.053e-66 239.0 COG3185@1|root,COG3185@2|Bacteria,1MUVZ@1224|Proteobacteria,1RN2Z@1236|Gammaproteobacteria,1X38W@135614|Xanthomonadales 135614|Xanthomonadales E 4-hydroxyphenylpyruvate dioxygenase hppD - 1.13.11.27 ko:K00457 ko00130,ko00350,ko00360,ko01100,map00130,map00350,map00360,map01100 M00044 R01372,R02521 RC00505,RC00738 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Glyoxalase,Glyoxalase_5 SRR25158195_k127_2382583_2 1429851.X548_17475 2.659e-91 310.0 COG1846@1|root,COG1846@2|Bacteria,1N1CJ@1224|Proteobacteria,1SCUJ@1236|Gammaproteobacteria,1X6IP@135614|Xanthomonadales 135614|Xanthomonadales K MarR family transcriptional regulator - - - - - - - - - - - - MarR_2 SRR25158195_k127_2382583_0 522373.Smlt4333 9.13e-230 715.0 2E62I@1|root,330RN@2|Bacteria,1NDU9@1224|Proteobacteria,1SFRS@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2382583_1 391008.Smal_3743 2.038e-102 336.0 COG0526@1|root,COG0526@2|Bacteria,1QZ6J@1224|Proteobacteria,1T4AC@1236|Gammaproteobacteria,1XD3K@135614|Xanthomonadales 135614|Xanthomonadales CO Thioredoxin-like - - - - - - - - - - - - Thioredoxin_7 SRR25158195_k127_2382583_4 1429851.X548_17495 3.013e-55 193.0 COG3104@1|root,COG3104@2|Bacteria,1MW6W@1224|Proteobacteria,1RM8P@1236|Gammaproteobacteria,1X3CQ@135614|Xanthomonadales 135614|Xanthomonadales E Transporter yhiP - - ko:K03305 - - - - ko00000 2.A.17 - - PTR2 SRR25158195_k127_2384278_0 522373.Smlt2835 0.0 1350.0 COG1629@1|root,COG4771@2|Bacteria,1R4PY@1224|Proteobacteria,1RYVW@1236|Gammaproteobacteria 1236|Gammaproteobacteria P TonB-dependent receptor - - - ko:K16089 - - - - ko00000,ko02000 1.B.14.1,1.B.14.10 - - Plug,TonB_dep_Rec SRR25158195_k127_2384278_1 522373.Smlt2834 4.951e-139 443.0 COG3468@1|root,COG3468@2|Bacteria,1R8WV@1224|Proteobacteria,1RPXJ@1236|Gammaproteobacteria,1X7KY@135614|Xanthomonadales 135614|Xanthomonadales MU Autotransporter beta-domain - - - - - - - - - - - - Autotransporter,Pertactin SRR25158195_k127_2385565_3 522373.Smlt3125 1.643e-48 186.0 28JZ9@1|root,2Z9PC@2|Bacteria,1R7GE@1224|Proteobacteria,1S7TF@1236|Gammaproteobacteria,1X5FZ@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2385565_0 1429851.X548_11285 2.489e-170 540.0 COG5504@1|root,COG5504@2|Bacteria,1PNSE@1224|Proteobacteria,1SWH5@1236|Gammaproteobacteria,1X4Z2@135614|Xanthomonadales 135614|Xanthomonadales O Predicted Zn-dependent protease (DUF2268) - - - - - - - - - - - - DUF2268 SRR25158195_k127_2385565_1 391008.Smal_2563 6.36e-120 390.0 COG2755@1|root,COG2755@2|Bacteria,1RE9P@1224|Proteobacteria,1SF9P@1236|Gammaproteobacteria,1X5EE@135614|Xanthomonadales 135614|Xanthomonadales E GDSL-like Lipase/Acylhydrolase - - - - - - - - - - - - Lipase_GDSL_2 SRR25158195_k127_2385565_2 1429851.X548_11270 2.339e-81 272.0 COG0824@1|root,COG0824@2|Bacteria,1RCSP@1224|Proteobacteria,1RZWX@1236|Gammaproteobacteria,1X8G4@135614|Xanthomonadales 135614|Xanthomonadales S Thioesterase-like superfamily - - - - - - - - - - - - 4HBT_2 SRR25158195_k127_2388366_1 522373.Smlt1791 1.939e-135 431.0 COG0363@1|root,COG0363@2|Bacteria,1R5K6@1224|Proteobacteria,1S11C@1236|Gammaproteobacteria,1X675@135614|Xanthomonadales 135614|Xanthomonadales G 6-phosphogluconolactonase pgl - 3.1.1.31 ko:K01057 ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200 M00004,M00006,M00008 R02035 RC00537 ko00000,ko00001,ko00002,ko01000 - - - Glucosamine_iso SRR25158195_k127_2388366_0 1429851.X548_06425 0.0 1224.0 COG0129@1|root,COG0129@2|Bacteria,1MU3T@1224|Proteobacteria,1RMNA@1236|Gammaproteobacteria,1X32C@135614|Xanthomonadales 135614|Xanthomonadales EG Belongs to the IlvD Edd family edd - 4.2.1.12 ko:K01690 ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200 M00008 R02036 RC00543 ko00000,ko00001,ko00002,ko01000 - - - ILVD_EDD SRR25158195_k127_2388366_2 391008.Smal_1527 1.333e-126 407.0 COG0800@1|root,COG0800@2|Bacteria,1MUVJ@1224|Proteobacteria,1RPDF@1236|Gammaproteobacteria,1X4EU@135614|Xanthomonadales 135614|Xanthomonadales G Aldolase eda - 4.1.2.14,4.1.3.42 ko:K01625 ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200 M00008,M00061,M00308,M00631 R00470,R05605 RC00307,RC00308,RC00435 ko00000,ko00001,ko00002,ko01000 - - - Aldolase SRR25158195_k127_2397575_5 1429851.X548_11840 8.222e-24 102.0 COG0810@1|root,COG0810@2|Bacteria,1PBVZ@1224|Proteobacteria,1SWM0@1236|Gammaproteobacteria,1X579@135614|Xanthomonadales 135614|Xanthomonadales M Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - - - - - - - - - - - SRR25158195_k127_2397575_2 391008.Smal_2673 8.26e-124 397.0 COG0316@1|root,COG0694@1|root,COG0316@2|Bacteria,COG0694@2|Bacteria,1MU8Y@1224|Proteobacteria,1RN7J@1236|Gammaproteobacteria,1X4F3@135614|Xanthomonadales 135614|Xanthomonadales C Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins nfuA - - ko:K07400 - - - - ko00000 - - - Fe-S_biosyn,NifU SRR25158195_k127_2397575_4 391008.Smal_2674 2.011e-70 239.0 COG2154@1|root,COG2154@2|Bacteria,1RH99@1224|Proteobacteria,1SAUS@1236|Gammaproteobacteria,1X738@135614|Xanthomonadales 135614|Xanthomonadales H pterin-4-alpha-carbinolamine dehydratase phhB - 4.2.1.96 ko:K01724 ko00790,map00790 - R04734 RC01208 ko00000,ko00001,ko01000,ko04147 - - - Pterin_4a SRR25158195_k127_2397575_3 391008.Smal_2675 1.933e-71 253.0 COG0810@1|root,COG0810@2|Bacteria,1NHEC@1224|Proteobacteria,1T6H8@1236|Gammaproteobacteria,1X7HB@135614|Xanthomonadales 135614|Xanthomonadales M COG0810 Periplasmic protein TonB, links inner and outer membranes - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C SRR25158195_k127_2397575_1 522373.Smlt3245 9.704e-169 531.0 COG0428@1|root,COG0428@2|Bacteria,1MWEZ@1224|Proteobacteria,1RNXU@1236|Gammaproteobacteria,1X4CY@135614|Xanthomonadales 135614|Xanthomonadales P Mediates zinc uptake. May also transport other divalent cations zupT GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - ko:K07238 - - - - ko00000,ko02000 2.A.5.5 - - Zip SRR25158195_k127_2397575_0 1300345.LF41_72 0.0 1210.0 COG0564@1|root,COG0564@2|Bacteria,1MVDX@1224|Proteobacteria,1RPAN@1236|Gammaproteobacteria,1X407@135614|Xanthomonadales 135614|Xanthomonadales J Responsible for synthesis of pseudouridine from uracil rluC - 5.4.99.24 ko:K06179 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 SRR25158195_k127_2400782_0 365044.Pnap_2141 3.485e-198 624.0 COG1804@1|root,COG1804@2|Bacteria,1MU4A@1224|Proteobacteria,2VKDA@28216|Betaproteobacteria,4AA04@80864|Comamonadaceae 28216|Betaproteobacteria C PFAM L-carnitine dehydratase bile acid-inducible protein F - - - - - - - - - - - - CoA_transf_3 SRR25158195_k127_2400782_1 78245.Xaut_1346 5.735e-50 177.0 COG1960@1|root,COG1960@2|Bacteria,1MVAH@1224|Proteobacteria,2TR02@28211|Alphaproteobacteria,3F10R@335928|Xanthobacteraceae 28211|Alphaproteobacteria C Acyl-CoA dehydrogenase, middle domain - - 1.3.8.7 ko:K00249 ko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320 M00013,M00036,M00087 R00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754 RC00052,RC00068,RC00076,RC00095,RC00148,RC00246 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N SRR25158195_k127_2406456_1 522373.Smlt1277 5.189e-84 279.0 COG0178@1|root,COG0178@2|Bacteria,1MW0W@1224|Proteobacteria,1RMS9@1236|Gammaproteobacteria,1X45Q@135614|Xanthomonadales 135614|Xanthomonadales L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate uvrA - - ko:K03701 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - ABC_tran SRR25158195_k127_2406456_2 1429851.X548_04235 2.804e-80 276.0 COG0824@1|root,COG0824@2|Bacteria,1MZTU@1224|Proteobacteria,1S7VY@1236|Gammaproteobacteria,1XC0J@135614|Xanthomonadales 135614|Xanthomonadales S Acyl-ACP thioesterase - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT_2 SRR25158195_k127_2406456_3 522373.Smlt1274 1.975e-64 229.0 COG2847@1|root,COG2847@2|Bacteria,1NDCJ@1224|Proteobacteria,1SG2J@1236|Gammaproteobacteria,1X7ZY@135614|Xanthomonadales 135614|Xanthomonadales S Copper chaperone PCu(A)C - - - ko:K09796 - - - - ko00000,ko03110 - - - PCuAC SRR25158195_k127_2406456_0 522373.Smlt1273 9.081e-159 504.0 COG1024@1|root,COG1024@2|Bacteria,1RAAV@1224|Proteobacteria,1RRTJ@1236|Gammaproteobacteria,1X44B@135614|Xanthomonadales 135614|Xanthomonadales I Belongs to the enoyl-CoA hydratase isomerase family - - - - - - - - - - - - ECH_1 SRR25158195_k127_2406456_4 391008.Smal_1113 3.384e-26 111.0 COG1946@1|root,COG1946@2|Bacteria,1MV9R@1224|Proteobacteria,1RPFI@1236|Gammaproteobacteria,1X38E@135614|Xanthomonadales 135614|Xanthomonadales I Acyl-CoA thioesterase tesB - - ko:K10805 ko01040,map01040 - - - ko00000,ko00001,ko01000,ko01004 - - - 4HBT_3 SRR25158195_k127_2412784_2 1118235.CAJH01000046_gene2940 7.318e-29 118.0 COG0824@1|root,COG0824@2|Bacteria,1RH6W@1224|Proteobacteria,1S6BU@1236|Gammaproteobacteria,1X6UW@135614|Xanthomonadales 135614|Xanthomonadales S Thioesterase superfamily - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT,4HBT_2 SRR25158195_k127_2412784_0 391008.Smal_3917 6e-323 996.0 COG2986@1|root,COG2986@2|Bacteria,1MU6K@1224|Proteobacteria,1RP02@1236|Gammaproteobacteria,1X5RJ@135614|Xanthomonadales 135614|Xanthomonadales E Histidine ammonia-lyase - - 4.3.1.3 ko:K01745 ko00340,ko01100,map00340,map01100 M00045 R01168 RC00361 ko00000,ko00001,ko00002,ko01000 - - - Lyase_aromatic SRR25158195_k127_2412784_1 1278073.MYSTI_03307 1.764e-85 289.0 COG4261@1|root,COG4261@2|Bacteria,1MVXJ@1224|Proteobacteria 1224|Proteobacteria M Acyl-transferase ycdQ - - - - - - - - - - - Glycos_transf_2,Lip_A_acyltrans SRR25158195_k127_2413389_2 391008.Smal_4031 5.78e-126 406.0 COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,1SZXE@1236|Gammaproteobacteria,1XBX7@135614|Xanthomonadales 135614|Xanthomonadales E amino acid - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 SRR25158195_k127_2413389_3 522373.Smlt4682 3.305e-125 402.0 COG1280@1|root,COG1280@2|Bacteria,1RA1G@1224|Proteobacteria,1S6KD@1236|Gammaproteobacteria,1XCP9@135614|Xanthomonadales 135614|Xanthomonadales E LysE type translocator - - - - - - - - - - - - LysE SRR25158195_k127_2413389_1 391008.Smal_4027 7.114e-188 591.0 COG0583@1|root,COG0583@2|Bacteria,1MZZP@1224|Proteobacteria,1RNX9@1236|Gammaproteobacteria,1X4Q9@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2413389_0 1429851.X548_19025 5.187e-198 624.0 COG0604@1|root,COG0604@2|Bacteria,1MU4N@1224|Proteobacteria,1RNSV@1236|Gammaproteobacteria,1X3D6@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily - - - - - - - - - - - - ADH_N,ADH_zinc_N_2 SRR25158195_k127_2413389_4 522373.Smlt4679 5.231e-81 271.0 COG0625@1|root,COG0625@2|Bacteria,1RA4M@1224|Proteobacteria,1RYD2@1236|Gammaproteobacteria,1XA6T@135614|Xanthomonadales 135614|Xanthomonadales O glutathione s-transferase gst8 - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C,GST_C_2,GST_N_3 SRR25158195_k127_2422508_6 391008.Smal_3223 1.284e-13 72.0 2AP7Y@1|root,31E9T@2|Bacteria,1QBJG@1224|Proteobacteria,1T753@1236|Gammaproteobacteria,1X8SR@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2422508_1 391008.Smal_3224 9.542e-200 629.0 COG0810@1|root,COG4219@1|root,COG0810@2|Bacteria,COG4219@2|Bacteria,1R3YH@1224|Proteobacteria,1RX87@1236|Gammaproteobacteria,1X5U4@135614|Xanthomonadales 135614|Xanthomonadales KT Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - - - - - - - - - - Peptidase_M56,TonB_C SRR25158195_k127_2422508_4 317013.NY99_19750 1.1e-48 176.0 COG3682@1|root,COG3682@2|Bacteria,1RHX7@1224|Proteobacteria,1S5UV@1236|Gammaproteobacteria,1X6ZB@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator blaI - - - - - - - - - - - Penicillinase_R SRR25158195_k127_2422508_5 1429851.X548_14800 1.076e-34 138.0 COG1853@1|root,COG1853@2|Bacteria,1NB1B@1224|Proteobacteria,1S55P@1236|Gammaproteobacteria,1X6AK@135614|Xanthomonadales 135614|Xanthomonadales S flavin reductase - - - - - - - - - - - - Flavin_Reduct SRR25158195_k127_2422508_3 391008.Smal_3226 4.478e-70 243.0 COG1853@1|root,COG1853@2|Bacteria,1NB1B@1224|Proteobacteria,1S55P@1236|Gammaproteobacteria,1X6AK@135614|Xanthomonadales 135614|Xanthomonadales S flavin reductase - - - - - - - - - - - - Flavin_Reduct SRR25158195_k127_2422508_0 522373.Smlt3812 0.0 1249.0 COG0427@1|root,COG0427@2|Bacteria,1PJY0@1224|Proteobacteria,1RPS6@1236|Gammaproteobacteria,1X3GP@135614|Xanthomonadales 135614|Xanthomonadales C acetyl-coa hydrolase - - - - - - - - - - - - AcetylCoA_hyd_C SRR25158195_k127_2422508_2 391008.Smal_3228 1.517e-74 251.0 COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,1RMWP@1236|Gammaproteobacteria,1X498@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate tktA - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C,Transketolase_N SRR25158195_k127_2428783_2 1003200.AXXA_24390 8.787e-13 74.0 COG3673@1|root,COG3673@2|Bacteria,1R405@1224|Proteobacteria,2VSRP@28216|Betaproteobacteria 28216|Betaproteobacteria S Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - - - - - - - - - - DUF2235 SRR25158195_k127_2428783_1 216591.BCAL1357 1.626e-23 108.0 2E13R@1|root,32WTF@2|Bacteria,1N2DX@1224|Proteobacteria,2VY15@28216|Betaproteobacteria,1KA2B@119060|Burkholderiaceae 28216|Betaproteobacteria S Evidence 5 No homology to any previously reported sequences - - - - - - - - - - - - DUF3304 SRR25158195_k127_2428783_0 1003200.AXXA_24390 5.978e-167 549.0 COG3673@1|root,COG3673@2|Bacteria,1R405@1224|Proteobacteria,2VSRP@28216|Betaproteobacteria 28216|Betaproteobacteria S Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - - - - - - - - - - DUF2235 SRR25158195_k127_2438947_9 522373.Smlt0254 5.281e-18 83.0 COG0583@1|root,COG0583@2|Bacteria,1NSSK@1224|Proteobacteria,1RZBP@1236|Gammaproteobacteria,1X9AJ@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2438947_2 522373.Smlt0253 1.974e-225 702.0 COG1902@1|root,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,1RMII@1236|Gammaproteobacteria,1X3AF@135614|Xanthomonadales 135614|Xanthomonadales C Oxidoreductase - - - - - - - - - - - - Oxidored_FMN SRR25158195_k127_2438947_4 391008.Smal_0210 7.783e-164 518.0 COG0846@1|root,COG0846@2|Bacteria,1MUK1@1224|Proteobacteria,1RTDE@1236|Gammaproteobacteria,1X5AI@135614|Xanthomonadales 135614|Xanthomonadales K NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form cobB - - - - - - - - - - - SIR2 SRR25158195_k127_2438947_7 522373.Smlt0251 2.759e-77 260.0 COG1607@1|root,COG1607@2|Bacteria,1RHNU@1224|Proteobacteria,1S4SW@1236|Gammaproteobacteria,1XD3I@135614|Xanthomonadales 135614|Xanthomonadales I Thioesterase superfamily VL23_09840 - - - - - - - - - - - 4HBT SRR25158195_k127_2438947_6 1429851.X548_20200 2.165e-111 366.0 COG1280@1|root,COG1280@2|Bacteria,1MWA1@1224|Proteobacteria,1RPAI@1236|Gammaproteobacteria,1X3PG@135614|Xanthomonadales 135614|Xanthomonadales E LysE type translocator - - - - - - - - - - - - LysE SRR25158195_k127_2438947_3 522373.Smlt0248 1.508e-222 691.0 COG0208@1|root,COG0208@2|Bacteria,1MWUS@1224|Proteobacteria,1RMJC@1236|Gammaproteobacteria,1X3WQ@135614|Xanthomonadales 135614|Xanthomonadales F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides - - 1.17.4.1 ko:K00526 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - Ribonuc_red_sm SRR25158195_k127_2438947_0 522373.Smlt0247 0.0 1548.0 COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,1RMPV@1236|Gammaproteobacteria,1X48F@135614|Xanthomonadales 135614|Xanthomonadales F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides - - 1.17.4.1 ko:K00525 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - ATP-cone,Ribonuc_red_lgC,Ribonuc_red_lgN SRR25158195_k127_2438947_10 59538.XP_005976049.1 2.446e-15 84.0 COG0209@1|root,KOG1112@2759|Eukaryota,38B81@33154|Opisthokonta,3B9IQ@33208|Metazoa,3CUAM@33213|Bilateria,48345@7711|Chordata,48Y78@7742|Vertebrata,3JEFR@40674|Mammalia,4J4KZ@91561|Cetartiodactyla 2759|Eukaryota F Ribonucleoside-diphosphate reductase large - - - - - - - - - - - - ATP-cone,Ribonuc_red_lgC,Ribonuc_red_lgN SRR25158195_k127_2438947_5 391008.Smal_0205 1.239e-114 376.0 2C535@1|root,32RF1@2|Bacteria,1RKPW@1224|Proteobacteria,1S6DR@1236|Gammaproteobacteria,1X7K9@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2884) - - - - - - - - - - - - DUF2884 SRR25158195_k127_2438947_1 522373.Smlt0246 3.732e-239 741.0 COG1485@1|root,COG1485@2|Bacteria,1MUUW@1224|Proteobacteria,1RMTJ@1236|Gammaproteobacteria,1X4VN@135614|Xanthomonadales 135614|Xanthomonadales D Reduces the stability of FtsZ polymers in the presence of ATP zapE - - ko:K06916 - - - - ko00000,ko03036 - - - AFG1_ATPase SRR25158195_k127_2438947_8 522373.Smlt0245 3.019e-48 172.0 COG2945@1|root,COG2945@2|Bacteria,1MUDY@1224|Proteobacteria,1S4MG@1236|Gammaproteobacteria,1X4H4@135614|Xanthomonadales 135614|Xanthomonadales S Alpha beta - - - ko:K07018 - - - - ko00000 - - - Hydrolase_4,Peptidase_S15 SRR25158195_k127_2440788_0 1429851.X548_10395 0.0 1081.0 COG4655@1|root,COG4655@2|Bacteria,1R41B@1224|Proteobacteria,1S49Q@1236|Gammaproteobacteria,1X3UM@135614|Xanthomonadales 135614|Xanthomonadales S Putative Tad-like Flp pilus-assembly - - - - - - - - - - - - Tad,Tad_C SRR25158195_k127_2440788_2 522373.Smlt2877 1.626e-42 161.0 2DR0C@1|root,339NA@2|Bacteria,1NGC5@1224|Proteobacteria,1SGQ7@1236|Gammaproteobacteria,1XBAU@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3613) - - - - - - - - - - - - DUF3613 SRR25158195_k127_2440788_1 522373.Smlt2876 4.464e-82 276.0 COG0457@1|root,COG0457@2|Bacteria,1RHVD@1224|Proteobacteria,1SBDQ@1236|Gammaproteobacteria,1X80P@135614|Xanthomonadales 135614|Xanthomonadales S flp pilus assembly protein - - - - - - - - - - - - TPR_19 SRR25158195_k127_2445349_12 522373.Smlt4313 1.681e-40 151.0 COG0147@1|root,COG0147@2|Bacteria,1MVBJ@1224|Proteobacteria,1RMSE@1236|Gammaproteobacteria,1X3D1@135614|Xanthomonadales 135614|Xanthomonadales E Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia trpE - 4.1.3.27 ko:K01657 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Anth_synt_I_N,Chorismate_bind SRR25158195_k127_2445349_3 391008.Smal_3723 1.506e-176 556.0 COG1597@1|root,COG1597@2|Bacteria,1MY37@1224|Proteobacteria,1RMX9@1236|Gammaproteobacteria,1X5RC@135614|Xanthomonadales 135614|Xanthomonadales F the in vivo substrate is - - - - - - - - - - - - DAGK_cat SRR25158195_k127_2445349_6 522373.Smlt4315 2.291e-96 316.0 COG0454@1|root,COG0456@2|Bacteria,1RCYQ@1224|Proteobacteria,1S3YJ@1236|Gammaproteobacteria,1X6S3@135614|Xanthomonadales 135614|Xanthomonadales K N-acetyltransferase - - - - - - - - - - - - Acetyltransf_1 SRR25158195_k127_2445349_4 1429851.X548_17400 1.66e-138 445.0 COG0036@1|root,COG0036@2|Bacteria,1MUZM@1224|Proteobacteria,1RN3K@1236|Gammaproteobacteria,1X3J3@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the ribulose-phosphate 3-epimerase family rpe - 5.1.3.1 ko:K01783 ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007 R01529 RC00540 ko00000,ko00001,ko00002,ko01000 - - - Ribul_P_3_epim SRR25158195_k127_2445349_8 522373.Smlt4317 3.475e-74 249.0 COG2214@1|root,COG2214@2|Bacteria,1RC4A@1224|Proteobacteria,1T2IS@1236|Gammaproteobacteria,1X6XF@135614|Xanthomonadales 135614|Xanthomonadales O DnaJ molecular chaperone homology domain - - - - - - - - - - - - DnaJ SRR25158195_k127_2445349_2 522373.Smlt4318 3.781e-204 636.0 COG0152@1|root,COG0152@2|Bacteria,1MUR9@1224|Proteobacteria,1RNNY@1236|Gammaproteobacteria,1X3PE@135614|Xanthomonadales 135614|Xanthomonadales F Belongs to the SAICAR synthetase family purC GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 ko:K01923 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04591 RC00064,RC00162 ko00000,ko00001,ko00002,ko01000 - - - SAICAR_synt SRR25158195_k127_2445349_5 522373.Smlt4319 3.161e-101 336.0 COG4539@1|root,COG4539@2|Bacteria,1N1G8@1224|Proteobacteria,1S9FD@1236|Gammaproteobacteria,1X6EP@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - DUF962 SRR25158195_k127_2445349_0 391008.Smal_3729 0.0 1752.0 COG1009@1|root,COG2111@1|root,COG1009@2|Bacteria,COG2111@2|Bacteria,1MW2M@1224|Proteobacteria,1RNKN@1236|Gammaproteobacteria,1X40I@135614|Xanthomonadales 135614|Xanthomonadales CP Subunit A of antiporter complex involved in resistance to high concentrations of Na , K , Li and or alkali ndhF - - ko:K05559 - - - - ko00000,ko02000 2.A.63.1 - - DUF4040,MnhB,Proton_antipo_M,Proton_antipo_N SRR25158195_k127_2445349_10 1429851.X548_17425 2.128e-65 235.0 COG1006@1|root,COG1006@2|Bacteria,1RH8H@1224|Proteobacteria,1SA5H@1236|Gammaproteobacteria,1X6WN@135614|Xanthomonadales 135614|Xanthomonadales P NADH-ubiquinone oxidoreductase subunit 4L phaC - - ko:K05560 - - - - ko00000,ko02000 2.A.63.1 - - Oxidored_q2 SRR25158195_k127_2445349_1 1429851.X548_17430 5.418e-314 964.0 COG0651@1|root,COG0651@2|Bacteria,1MURB@1224|Proteobacteria,1RQBG@1236|Gammaproteobacteria,1X5EC@135614|Xanthomonadales 135614|Xanthomonadales CP Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter MnhD subunit phaD - - ko:K05561 - - - - ko00000,ko02000 2.A.63.1 - - Proton_antipo_M SRR25158195_k127_2445349_7 391008.Smal_3732 1.796e-90 320.0 COG1863@1|root,COG1863@2|Bacteria,1N1SJ@1224|Proteobacteria,1T0DK@1236|Gammaproteobacteria,1X6CB@135614|Xanthomonadales 135614|Xanthomonadales P antiporter phaE - - ko:K05562 - - - - ko00000,ko02000 2.A.63.1 - - MNHE SRR25158195_k127_2445349_11 522373.Smlt4324 8.109e-46 176.0 COG2212@1|root,COG2212@2|Bacteria,1N8WJ@1224|Proteobacteria,1S8ZM@1236|Gammaproteobacteria,1X7NA@135614|Xanthomonadales 135614|Xanthomonadales P Multisubunit Na H antiporter, MnhF subunit phaF - - ko:K05563 - - - - ko00000,ko02000 2.A.63.1 - - MrpF_PhaF SRR25158195_k127_2445349_9 522373.Smlt4325 6.846e-70 241.0 COG1320@1|root,COG1320@2|Bacteria,1MZ6Z@1224|Proteobacteria,1S8TM@1236|Gammaproteobacteria,1X7G1@135614|Xanthomonadales 135614|Xanthomonadales P antiporter phaG - - ko:K05564 - - - - ko00000,ko02000 2.A.63.1 - - PhaG_MnhG_YufB SRR25158195_k127_2445349_13 391008.Smal_3735 2.31e-24 103.0 COG0530@1|root,COG0530@2|Bacteria,1MU3R@1224|Proteobacteria,1RMRD@1236|Gammaproteobacteria,1X3N5@135614|Xanthomonadales 135614|Xanthomonadales P antiporter - - - ko:K07301 - - - - ko00000,ko02000 2.A.19.5 - - Na_Ca_ex SRR25158195_k127_2451471_1 913325.N799_13900 7.176e-07 53.0 COG0825@1|root,COG0825@2|Bacteria,1MURN@1224|Proteobacteria,1RNN8@1236|Gammaproteobacteria,1X3I8@135614|Xanthomonadales 135614|Xanthomonadales I Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA accA - 2.1.3.15,6.4.1.2 ko:K01962 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - ACCA SRR25158195_k127_2451471_0 522373.Smlt1492 0.0 1934.0 COG0587@1|root,COG0587@2|Bacteria,1MUIF@1224|Proteobacteria,1RP0K@1236|Gammaproteobacteria,1X48C@135614|Xanthomonadales 135614|Xanthomonadales L dna polymerase dnaE - 2.7.7.7 ko:K02337 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon SRR25158195_k127_2463927_2 279238.Saro_2873 1.812e-14 85.0 COG0625@1|root,COG0625@2|Bacteria,1R6UY@1224|Proteobacteria,2U1WS@28211|Alphaproteobacteria 28211|Alphaproteobacteria O Glutathione S-transferase, C-terminal domain - - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C,GST_C_2,GST_N,GST_N_3 SRR25158195_k127_2463927_0 633149.Bresu_2046 5.598e-112 377.0 COG0477@1|root,COG2814@2|Bacteria,1NU31@1224|Proteobacteria,2TY1U@28211|Alphaproteobacteria,2KK97@204458|Caulobacterales 204458|Caulobacterales EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_2463927_1 392499.Swit_0918 3.709e-32 134.0 COG2271@1|root,COG2271@2|Bacteria,1MWYR@1224|Proteobacteria,2U1SE@28211|Alphaproteobacteria,2K2V3@204457|Sphingomonadales 204457|Sphingomonadales G Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_2465774_2 522373.Smlt1466 1.195e-25 108.0 COG4637@1|root,COG4637@2|Bacteria,1ND40@1224|Proteobacteria,1RPX7@1236|Gammaproteobacteria,1X5IE@135614|Xanthomonadales 135614|Xanthomonadales S AAA domain, putative AbiEii toxin, Type IV TA system - - - - - - - - - - - - AAA_21 SRR25158195_k127_2465774_0 1429851.X548_04870 2.3e-199 624.0 COG2199@1|root,COG2203@1|root,COG2203@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,1T1I4@1236|Gammaproteobacteria,1X2XB@135614|Xanthomonadales 135614|Xanthomonadales T Diguanylate cyclase - - - - - - - - - - - - GAF,GGDEF SRR25158195_k127_2465774_1 1429851.X548_04865 7.329e-60 207.0 COG1187@1|root,COG1187@2|Bacteria,1MXQE@1224|Proteobacteria,1RMC7@1236|Gammaproteobacteria,1X338@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the pseudouridine synthase RsuA family rluF - 5.4.99.21 ko:K06182 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 SRR25158195_k127_246740_0 391008.Smal_3716 1.026e-145 463.0 COG0730@1|root,COG0730@2|Bacteria,1PGTZ@1224|Proteobacteria,1RPMM@1236|Gammaproteobacteria,1X5WN@135614|Xanthomonadales 135614|Xanthomonadales S membrane transporter protein - - - ko:K07090 - - - - ko00000 - - - TauE SRR25158195_k127_246740_1 391008.Smal_3715 1.41e-141 451.0 COG0664@1|root,COG0664@2|Bacteria,1MXID@1224|Proteobacteria,1RMIZ@1236|Gammaproteobacteria,1X3QC@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator clp GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0006355,GO:0008144,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0030551,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032561,GO:0035438,GO:0036094,GO:0043167,GO:0043168,GO:0046983,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - ko:K10914 ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111 - - - ko00000,ko00001,ko03000 - - - Crp,HTH_Crp_2,cNMP_binding SRR25158195_k127_2486029_3 522373.Smlt2574 1.821e-05 46.0 COG0715@1|root,COG0715@2|Bacteria,1MVZE@1224|Proteobacteria,1SF34@1236|Gammaproteobacteria,1XAWQ@135614|Xanthomonadales 135614|Xanthomonadales P NMT1/THI5 like - - - ko:K02051 - M00188 - - ko00000,ko00002,ko02000 3.A.1.16,3.A.1.17 - - NMT1 SRR25158195_k127_2486029_1 522373.Smlt2573 5.945e-169 531.0 COG1116@1|root,COG1116@2|Bacteria,1MUDV@1224|Proteobacteria,1RNEH@1236|Gammaproteobacteria,1X6V5@135614|Xanthomonadales 135614|Xanthomonadales P ABC transporter ssuB1 - - ko:K02049,ko:K15555 ko00920,ko02010,map00920,map02010 M00188,M00436 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.16,3.A.1.17,3.A.1.17.2 - - AAA_assoc_C,ABC_tran SRR25158195_k127_2486029_2 1279038.KB907338_gene739 1.076e-114 377.0 COG0600@1|root,COG0600@2|Bacteria,1MVD2@1224|Proteobacteria,2TT6U@28211|Alphaproteobacteria,2JZKX@204441|Rhodospirillales 204441|Rhodospirillales P Binding-protein-dependent transport system inner membrane component - - - - - - - - - - - - BPD_transp_1 SRR25158195_k127_2486029_0 1429851.X548_08670 3.018e-264 820.0 COG3746@1|root,COG3746@2|Bacteria,1N5TT@1224|Proteobacteria,1S11Y@1236|Gammaproteobacteria,1X55A@135614|Xanthomonadales 135614|Xanthomonadales P Phosphate-selective porin O and P - - - ko:K07221 - - - - ko00000,ko02000 1.B.5.1 - - Porin_O_P SRR25158195_k127_2486113_0 522373.Smlt2245 0.0 1509.0 COG1049@1|root,COG1049@2|Bacteria,1MVCR@1224|Proteobacteria,1RNMC@1236|Gammaproteobacteria,1X3YB@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the aconitase IPM isomerase family acnB - 4.2.1.3,4.2.1.99 ko:K01682 ko00020,ko00630,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173 R01324,R01325,R01900,R04425 RC00497,RC00498,RC00618,RC01153 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_2_N,Aconitase_B_N SRR25158195_k127_2489370_0 1429851.X548_04500 2.981e-274 843.0 COG0376@1|root,COG0376@2|Bacteria,1MUBF@1224|Proteobacteria,1RNA5@1236|Gammaproteobacteria,1X4PG@135614|Xanthomonadales 135614|Xanthomonadales P Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity katG GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0020037,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748 1.11.1.21 ko:K03782 ko00360,ko00380,ko00940,ko00983,ko01100,ko01110,map00360,map00380,map00940,map00983,map01100,map01110 - R00602,R00698,R02596,R02670,R03919,R04007,R07443,R11906 RC00034,RC00213,RC00767,RC02141 ko00000,ko00001,ko01000 - - - peroxidase SRR25158195_k127_2489370_2 1429851.X548_04505 1.974e-94 323.0 COG5403@1|root,COG5403@2|Bacteria,1RDJ5@1224|Proteobacteria,1SXHX@1236|Gammaproteobacteria,1X69G@135614|Xanthomonadales 135614|Xanthomonadales S Bacterial protein of unknown function (DUF937) - - - - - - - - - - - - DUF937 SRR25158195_k127_2489370_1 522373.Smlt1387 1.264e-245 760.0 COG0249@1|root,COG0249@2|Bacteria,1MUGX@1224|Proteobacteria,1RNW3@1236|Gammaproteobacteria,1X3CX@135614|Xanthomonadales 135614|Xanthomonadales L that it carries out the mismatch recognition step. This protein has a weak ATPase activity mutS GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - ko:K03555 ko03430,map03430 - - - ko00000,ko00001,ko03400 - - - MutS_I,MutS_II,MutS_III,MutS_IV,MutS_V SRR25158195_k127_2490344_3 391008.Smal_3977 9.218e-112 363.0 COG1971@1|root,COG1971@2|Bacteria,1NWBY@1224|Proteobacteria,1RR6R@1236|Gammaproteobacteria,1X6AC@135614|Xanthomonadales 135614|Xanthomonadales P Probably functions as a manganese efflux pump mntP - - - - - - - - - - - Mntp SRR25158195_k127_2490344_5 391008.Smal_3976 6.615e-23 98.0 COG1943@1|root,COG1943@2|Bacteria,1MZZT@1224|Proteobacteria,1S9JG@1236|Gammaproteobacteria,1X7MY@135614|Xanthomonadales 135614|Xanthomonadales L Transposase and inactivated derivatives - - - - - - - - - - - - Y1_Tnp SRR25158195_k127_2490344_4 391008.Smal_3976 2.289e-47 170.0 COG1943@1|root,COG1943@2|Bacteria,1MZZT@1224|Proteobacteria,1S9JG@1236|Gammaproteobacteria,1X7MY@135614|Xanthomonadales 135614|Xanthomonadales L Transposase and inactivated derivatives - - - - - - - - - - - - Y1_Tnp SRR25158195_k127_2490344_2 522373.Smlt4624 1.184e-136 436.0 COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,1RU35@1236|Gammaproteobacteria,1X3JV@135614|Xanthomonadales 135614|Xanthomonadales KT Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain tcsR - - - - - - - - - - - GerE,Response_reg SRR25158195_k127_2490344_0 522373.Smlt4623 0.0 1342.0 COG0365@1|root,COG0365@2|Bacteria,1MUF5@1224|Proteobacteria,1RMNZ@1236|Gammaproteobacteria,1X34U@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA acsA - 6.2.1.1 ko:K01895 ko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200 M00357 R00235,R00236,R00316,R00926,R01354 RC00004,RC00012,RC00043,RC00070,RC02746,RC02816 ko00000,ko00001,ko00002,ko01000,ko01004 - - - ACAS_N,AMP-binding,AMP-binding_C SRR25158195_k127_2490344_1 1429851.X548_18740 1.713e-153 489.0 COG3203@1|root,COG3203@2|Bacteria,1MX4Q@1224|Proteobacteria,1RY5B@1236|Gammaproteobacteria,1X3S0@135614|Xanthomonadales 135614|Xanthomonadales M Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - - - - - - - - - - - SRR25158195_k127_2493203_1 522373.Smlt0421 2.267e-234 730.0 COG0793@1|root,COG0793@2|Bacteria,1MU39@1224|Proteobacteria,1RMSR@1236|Gammaproteobacteria,1X36C@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the peptidase S41A family ctp - 3.4.21.102 ko:K03797 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Peptidase_S41 SRR25158195_k127_2493203_0 391008.Smal_0303 3.079e-238 743.0 COG4942@1|root,COG4942@2|Bacteria,1MY3E@1224|Proteobacteria,1RPQP@1236|Gammaproteobacteria,1X50B@135614|Xanthomonadales 135614|Xanthomonadales D Peptidase M23 - - - - - - - - - - - - Peptidase_M23 SRR25158195_k127_2493203_2 522373.Smlt0419 5.09e-116 376.0 COG3595@1|root,COG3595@2|Bacteria,1N10U@1224|Proteobacteria,1S8T2@1236|Gammaproteobacteria,1X5XN@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2495026_0 522373.Smlt2883 1.024e-313 964.0 COG0477@1|root,COG0477@2|Bacteria,1MXZ3@1224|Proteobacteria,1RMM3@1236|Gammaproteobacteria,1X314@135614|Xanthomonadales 135614|Xanthomonadales EGP MFS transporter - - - - - - - - - - - - MFS_3 SRR25158195_k127_2495026_1 1429851.X548_10410 1.463e-171 544.0 COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,1RMFE@1236|Gammaproteobacteria,1X43J@135614|Xanthomonadales 135614|Xanthomonadales I Alpha beta hydrolase cpo - 1.11.1.10 ko:K00433 - - - - ko00000,ko01000 - - - Abhydrolase_1 SRR25158195_k127_2495026_2 522373.Smlt2880 7.677e-119 390.0 2AU3B@1|root,31JPS@2|Bacteria,1MYCB@1224|Proteobacteria,1SVSE@1236|Gammaproteobacteria,1XAH0@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2968) - - - - - - - - - - - - DUF2968 SRR25158195_k127_2495026_4 1429851.X548_10395 1.243e-28 115.0 COG4655@1|root,COG4655@2|Bacteria,1R41B@1224|Proteobacteria,1S49Q@1236|Gammaproteobacteria,1X3UM@135614|Xanthomonadales 135614|Xanthomonadales S Putative Tad-like Flp pilus-assembly - - - - - - - - - - - - Tad,Tad_C SRR25158195_k127_2495656_6 1429851.X548_03635 3.291e-70 240.0 COG0776@1|root,COG0776@2|Bacteria,1RFWH@1224|Proteobacteria,1S5GE@1236|Gammaproteobacteria,1X6UI@135614|Xanthomonadales 135614|Xanthomonadales L Belongs to the bacterial histone-like protein family VL23_14575 - - - - - - - - - - - Bac_DNA_binding SRR25158195_k127_2495656_8 1429851.X548_03630 1.73e-53 194.0 29STE@1|root,30DZE@2|Bacteria,1QG98@1224|Proteobacteria,1TDNA@1236|Gammaproteobacteria,1XAY1@135614|Xanthomonadales 135614|Xanthomonadales S Domain of Unknown Function with PDB structure (DUF3861) - - - - - - - - - - - - DUF3861 SRR25158195_k127_2495656_7 522373.Smlt1162 3.341e-62 222.0 2A19X@1|root,30PGF@2|Bacteria,1QBK6@1224|Proteobacteria,1T75S@1236|Gammaproteobacteria,1X8TX@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2495656_1 391008.Smal_1004 1.418e-115 379.0 2BX6S@1|root,324B7@2|Bacteria,1RJA2@1224|Proteobacteria,1SCPJ@1236|Gammaproteobacteria,1X7A2@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1439) - - - - - - - - - - - - DUF1439 SRR25158195_k127_2495656_3 522373.Smlt1160 1.746e-97 322.0 COG0693@1|root,COG0693@2|Bacteria,1MY0C@1224|Proteobacteria,1S3SC@1236|Gammaproteobacteria,1X6IS@135614|Xanthomonadales 135614|Xanthomonadales S intracellular protease pfpI - 3.5.1.124 ko:K05520 - - - - ko00000,ko01000,ko01002 - - - DJ-1_PfpI SRR25158195_k127_2495656_2 522373.Smlt1159 2.099e-98 325.0 COG2940@1|root,COG2940@2|Bacteria,1MWFB@1224|Proteobacteria,1SAJ4@1236|Gammaproteobacteria,1X5YA@135614|Xanthomonadales 135614|Xanthomonadales S SET domain - - - ko:K07117 - - - - ko00000 - - - SET SRR25158195_k127_2495656_4 522373.Smlt1158 6.232e-90 297.0 COG1959@1|root,COG1959@2|Bacteria,1N0E2@1224|Proteobacteria,1S915@1236|Gammaproteobacteria,1X6CG@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - - - - - - - - - - Rrf2 SRR25158195_k127_2495656_0 522373.Smlt1157 0.0 1003.0 COG0719@1|root,COG0719@2|Bacteria,1MVKY@1224|Proteobacteria,1RQ65@1236|Gammaproteobacteria,1X2XK@135614|Xanthomonadales 135614|Xanthomonadales O Cysteine desulfurase activator complex subunit SufB sufB - - ko:K09014 - - - - ko00000 - - - UPF0051 SRR25158195_k127_2495656_5 1429851.X548_03595 2.183e-70 248.0 COG0396@1|root,COG0396@2|Bacteria,1MUGK@1224|Proteobacteria,1RPFE@1236|Gammaproteobacteria,1X32R@135614|Xanthomonadales 135614|Xanthomonadales O Part of SUF system involved in inserting iron-sulfur clusters into proteins sufC - - ko:K09013 - - - - ko00000,ko02000 - - - ABC_tran SRR25158195_k127_2496539_1 1205753.A989_16133 2.547e-100 327.0 COG1053@1|root,COG1053@2|Bacteria,1MU5M@1224|Proteobacteria,1RMU2@1236|Gammaproteobacteria,1X4JC@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily sdhA - 1.3.5.1,1.3.5.4 ko:K00239 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_2,Succ_DH_flav_C SRR25158195_k127_2496539_0 391008.Smal_1538 1.418e-180 565.0 COG0479@1|root,COG0479@2|Bacteria,1MVHS@1224|Proteobacteria,1RNWR@1236|Gammaproteobacteria,1X3D9@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family sdhB - 1.3.5.1,1.3.5.4 ko:K00240 ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00149,M00173,M00374,M00376 R02164 RC00045 ko00000,ko00001,ko00002,ko01000 - - - Fer2_3,Fer4_17 SRR25158195_k127_2496539_2 391008.Smal_1539 9.007e-45 164.0 COG2938@1|root,COG2938@2|Bacteria,1N7P4@1224|Proteobacteria,1SCKB@1236|Gammaproteobacteria,1X8R6@135614|Xanthomonadales 135614|Xanthomonadales S Flavinator of succinate dehydrogenase - - - ko:K09159 - - - - ko00000,ko02048 - - - Sdh5 SRR25158195_k127_2497673_2 391008.Smal_3037 2.634e-146 467.0 COG0337@1|root,COG0337@2|Bacteria,1MUBK@1224|Proteobacteria,1RN4I@1236|Gammaproteobacteria,1X42C@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) aroB - 4.2.3.4 ko:K01735 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03083 RC00847 ko00000,ko00001,ko00002,ko01000 - - - DHQ_synthase SRR25158195_k127_2497673_4 391008.Smal_3036 4.131e-103 337.0 COG0703@1|root,COG0703@2|Bacteria,1MUFJ@1224|Proteobacteria,1RPF6@1236|Gammaproteobacteria,1X6GJ@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate aroK GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 ko:K00891 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02412 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - SKI SRR25158195_k127_2497673_7 522373.Smlt3618 1.792e-30 124.0 COG3360@1|root,COG3360@2|Bacteria,1N6YT@1224|Proteobacteria,1SJ4Y@1236|Gammaproteobacteria,1X874@135614|Xanthomonadales 135614|Xanthomonadales S Dodecin - - - ko:K09165 - - - - ko00000 - - - Dodecin SRR25158195_k127_2497673_1 1429851.X548_13810 9.623e-155 494.0 COG4240@1|root,COG4240@2|Bacteria,1QUTA@1224|Proteobacteria,1T23W@1236|Gammaproteobacteria,1X5RD@135614|Xanthomonadales 135614|Xanthomonadales S COG4240 Predicted kinase - - 2.7.1.31 ko:K15918 ko00260,ko00561,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00561,map00630,map01100,map01110,map01130,map01200 M00532 R01514 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - ArgK SRR25158195_k127_2497673_3 522373.Smlt3616 5.309e-123 395.0 COG0259@1|root,COG0259@2|Bacteria,1NZUU@1224|Proteobacteria,1RMQ2@1236|Gammaproteobacteria,1X4S4@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) pdxH GO:0003674,GO:0003824,GO:0004733,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.4.3.5 ko:K00275 ko00750,ko01100,ko01120,map00750,map01100,map01120 M00124 R00277,R00278,R01710,R01711 RC00048,RC00116 ko00000,ko00001,ko00002,ko01000 - - - PNP_phzG_C,Putative_PNPOx SRR25158195_k127_2497673_6 522373.Smlt3615 1.067e-75 263.0 COG0454@1|root,COG0456@2|Bacteria,1N09D@1224|Proteobacteria,1S90S@1236|Gammaproteobacteria,1X6ZQ@135614|Xanthomonadales 135614|Xanthomonadales K Catalyzes the transfer of an acetyl group from acetyl- CoA to the 6'-amino group of aminoglycoside molecules conferring resistance to antibiotics containing the purpurosamine ring - - 2.3.1.82 ko:K18816 - - - - br01600,ko00000,ko01000,ko01504 - - - Acetyltransf_1 SRR25158195_k127_2497673_0 1429851.X548_13790 3.393e-310 954.0 COG3829@1|root,COG3829@2|Bacteria,1NU8B@1224|Proteobacteria,1RMHY@1236|Gammaproteobacteria,1X569@135614|Xanthomonadales 135614|Xanthomonadales KT Propionate catabolism operon regulatory protein prpR - - ko:K02688 - - - - ko00000,ko03000 - - - HTH_8,PrpR_N,Sigma54_activat SRR25158195_k127_2497673_5 391008.Smal_3030 1.72e-85 307.0 COG2513@1|root,COG2513@2|Bacteria,1N4VT@1224|Proteobacteria,1RMR5@1236|Gammaproteobacteria,1X3JB@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate prpB - 4.1.3.30 ko:K03417 ko00640,map00640 - R00409 RC00286,RC00287 ko00000,ko00001,ko01000 - - - PEP_mutase SRR25158195_k127_2498226_0 365046.Rta_11750 1.782e-80 273.0 COG1230@1|root,COG1230@2|Bacteria,1MUSS@1224|Proteobacteria,2VQ08@28216|Betaproteobacteria,4ADUA@80864|Comamonadaceae 28216|Betaproteobacteria P Cation efflux protein - - - - - - - - - - - - Cation_efflux SRR25158195_k127_2498226_1 365046.Rta_11740 1.472e-20 96.0 COG4575@1|root,COG4575@2|Bacteria 2|Bacteria T ribosome binding - - - - - - - - - - - - DUF883 SRR25158195_k127_2498226_3 365044.Pnap_4555 0.000191 50.0 2EIPU@1|root,33DDH@2|Bacteria,1NKK4@1224|Proteobacteria,2VYJM@28216|Betaproteobacteria,4AFZ7@80864|Comamonadaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2501004_1 522373.Smlt1150 7.267e-57 198.0 COG2146@1|root,COG2146@2|Bacteria,1N8PE@1224|Proteobacteria,1SG29@1236|Gammaproteobacteria,1X6VK@135614|Xanthomonadales 135614|Xanthomonadales P Benzene 1,2-dioxygenase bedB - - ko:K05710 ko00360,ko01120,ko01220,map00360,map01120,map01220 M00545 R06782,R06783 RC00098 br01602,ko00000,ko00001,ko00002 - - - Rieske SRR25158195_k127_2501004_0 1045855.DSC_05775 7.045e-112 370.0 COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,1RN3C@1236|Gammaproteobacteria,1X38Y@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K16090 - - - - ko00000,ko02000 1.B.14.1.11 - - Plug,TonB_dep_Rec SRR25158195_k127_250110_3 522373.Smlt4350 2.902e-19 88.0 COG3264@1|root,COG3264@2|Bacteria,1MWSA@1224|Proteobacteria,1RMYY@1236|Gammaproteobacteria,1X4H3@135614|Xanthomonadales 135614|Xanthomonadales M Small-conductance mechanosensitive channel mscK - - ko:K05802 - - - - ko00000,ko02000 1.A.23.1.1 - - DUF3772,MS_channel SRR25158195_k127_250110_1 522373.Smlt4353 1.525e-98 327.0 COG3040@1|root,COG3040@2|Bacteria,1RDAI@1224|Proteobacteria,1S3PW@1236|Gammaproteobacteria,1XC0F@135614|Xanthomonadales 135614|Xanthomonadales M Lipocalin-like domain - - - ko:K03098 - - - - ko00000,ko04147 - - - Lipocalin_2 SRR25158195_k127_250110_0 522373.Smlt4354 3.167e-108 351.0 COG0665@1|root,COG0665@2|Bacteria,1MVRR@1224|Proteobacteria,1SMST@1236|Gammaproteobacteria,1X4RE@135614|Xanthomonadales 135614|Xanthomonadales E FAD dependent oxidoreductase - - - - - - - - - - - - DAO SRR25158195_k127_2503940_0 522373.Smlt2865 9.335e-256 816.0 COG5295@1|root,COG5295@2|Bacteria,1N338@1224|Proteobacteria,1RPXV@1236|Gammaproteobacteria,1X6PY@135614|Xanthomonadales 135614|Xanthomonadales UW YadA-like membrane anchor domain - - - ko:K21449 - - - - ko00000,ko02000 1.B.40.2 - - ESPR,YadA_anchor,YadA_head,YadA_stalk SRR25158195_k127_2503940_1 391008.Smal_2316 4.377e-68 231.0 COG2207@1|root,COG2207@2|Bacteria,1Q3UX@1224|Proteobacteria,1RS88@1236|Gammaproteobacteria 1236|Gammaproteobacteria K transcriptional regulator - - - - - - - - - - - - AraC_binding_2,HTH_18 SRR25158195_k127_2515399_1 522373.Smlt0707 7.634e-125 400.0 COG3121@1|root,COG3121@2|Bacteria,1RBUW@1224|Proteobacteria,1S2UZ@1236|Gammaproteobacteria,1X6PJ@135614|Xanthomonadales 135614|Xanthomonadales NU Pili assembly chaperone - - - ko:K15540 - - - - ko00000 - - - PapD_C,PapD_N SRR25158195_k127_2515399_0 522373.Smlt0708 0.0 1659.0 COG3188@1|root,COG3188@2|Bacteria,1MUHE@1224|Proteobacteria,1RMPU@1236|Gammaproteobacteria,1X3VY@135614|Xanthomonadales 135614|Xanthomonadales NU outer membrane usher protein - - - ko:K07347 ko05133,map05133 - - - ko00000,ko00001,ko02000,ko02035,ko02044 1.B.11.3 - - PapC_C,PapC_N,Usher SRR25158195_k127_2515399_2 522373.Smlt0709 4.747e-107 357.0 COG3539@1|root,COG3539@2|Bacteria,1R5WQ@1224|Proteobacteria,1S80K@1236|Gammaproteobacteria,1X6AR@135614|Xanthomonadales 135614|Xanthomonadales NU Fimbrial - - - - - - - - - - - - Fimbrial SRR25158195_k127_2517128_3 1429851.X548_17175 4.286e-35 133.0 COG0780@1|root,COG2904@1|root,COG0780@2|Bacteria,COG2904@2|Bacteria,1MW0M@1224|Proteobacteria,1RNXM@1236|Gammaproteobacteria,1X3ZK@135614|Xanthomonadales 135614|Xanthomonadales S Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) queF - 1.7.1.13 ko:K06879 ko00790,ko01100,map00790,map01100 - R07605 RC01875 ko00000,ko00001,ko01000,ko03016 - - - QueF,QueF_N SRR25158195_k127_2517128_2 1429851.X548_17170 1.149e-51 183.0 COG1652@1|root,COG1652@2|Bacteria,1RD8K@1224|Proteobacteria,1SGZZ@1236|Gammaproteobacteria,1XC0C@135614|Xanthomonadales 135614|Xanthomonadales S Lysin motif - - - - - - - - - - - - LysM SRR25158195_k127_2517128_1 391008.Smal_3685 5.253e-87 291.0 2AQTF@1|root,31G1I@2|Bacteria,1QDTY@1224|Proteobacteria,1T9Z0@1236|Gammaproteobacteria,1X8GI@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2517128_0 391008.Smal_3684 9.648e-319 985.0 COG2838@1|root,COG2838@2|Bacteria,1MV6Q@1224|Proteobacteria,1RPG4@1236|Gammaproteobacteria,1X3M6@135614|Xanthomonadales 135614|Xanthomonadales C NADP-specific, catalyzes the formation of 2-oxoglutarate from isocitrate or oxalosuccinate icd - 1.1.1.42 ko:K00031 ko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146 M00009,M00010,M00173,M00740 R00267,R00268,R01899 RC00001,RC00084,RC00114,RC00626,RC02801 br01601,ko00000,ko00001,ko00002,ko01000 - - - IDH SRR25158195_k127_2518049_3 1429851.X548_04290 1.06e-09 62.0 COG3975@1|root,COG3975@2|Bacteria,1MUHZ@1224|Proteobacteria,1RZ70@1236|Gammaproteobacteria,1X4ZJ@135614|Xanthomonadales 135614|Xanthomonadales S protease with the C-terminal PDZ domain - - - - - - - - - - - - Peptidase_M61,TPR_3 SRR25158195_k127_2518049_1 522373.Smlt1342 2.661e-200 625.0 COG0761@1|root,COG0761@2|Bacteria,1MU7G@1224|Proteobacteria,1RMN8@1236|Gammaproteobacteria,1X4RS@135614|Xanthomonadales 135614|Xanthomonadales IM Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis ispH - 1.17.7.4 ko:K03527 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05884,R08210 RC01137,RC01487 ko00000,ko00001,ko00002,ko01000 - - - LYTB SRR25158195_k127_2518049_2 522373.Smlt1341 1.008e-109 358.0 COG0597@1|root,COG0597@2|Bacteria,1RGV9@1224|Proteobacteria,1S60E@1236|Gammaproteobacteria,1X65S@135614|Xanthomonadales 135614|Xanthomonadales MU This protein specifically catalyzes the removal of signal peptides from prolipoproteins lspA - 3.4.23.36 ko:K03101 ko03060,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_A8 SRR25158195_k127_2518049_0 522373.Smlt1340 0.0 1309.0 COG0060@1|root,COG0060@2|Bacteria,1MVBQ@1224|Proteobacteria,1RMTF@1236|Gammaproteobacteria,1X47W@135614|Xanthomonadales 135614|Xanthomonadales J amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) ileS - 6.1.1.5 ko:K01870 ko00970,map00970 M00359,M00360 R03656 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,tRNA-synt_1,zf-FPG_IleRS SRR25158195_k127_2525502_1 1429851.X548_12235 5.355e-122 394.0 COG0008@1|root,COG0008@2|Bacteria,1MUN7@1224|Proteobacteria,1RMYQ@1236|Gammaproteobacteria,1X3RH@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon gluQ - - ko:K01894 - - - - ko00000,ko01000,ko01007,ko03016 - - - tRNA-synt_1c SRR25158195_k127_2525502_0 522373.Smlt3323 4.366e-172 542.0 COG0501@1|root,COG0501@2|Bacteria,1MUV4@1224|Proteobacteria,1RMN0@1236|Gammaproteobacteria,1X3I1@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the peptidase M48B family htpX - - ko:K03799 - M00743 - - ko00000,ko00002,ko01000,ko01002 - - - Peptidase_M48 SRR25158195_k127_2525856_1 1192034.CAP_4027 2.684e-25 107.0 COG0642@1|root,COG1352@1|root,COG5002@1|root,COG1352@2|Bacteria,COG2205@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria 1224|Proteobacteria T Histidine kinase - - 2.1.1.80,3.1.1.61 ko:K13924 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035 - - - CheB_methylest,CheR,CheR_N,GAF_2,HATPase_c,HisKA,PAS,PAS_10,PAS_4,PAS_9,Response_reg SRR25158195_k127_2525856_0 1278073.MYSTI_08053 3.049e-42 172.0 COG0642@1|root,COG2203@1|root,COG2203@2|Bacteria,COG2205@2|Bacteria,1QX74@1224|Proteobacteria,43AJN@68525|delta/epsilon subdivisions,2X5ZV@28221|Deltaproteobacteria,2YYZX@29|Myxococcales 28221|Deltaproteobacteria T GAF domain - - - - - - - - - - - - GAF_2,HATPase_c,HisKA SRR25158195_k127_2525856_2 378806.STAUR_1107 0.000394 49.0 2A8Z7@1|root,30Y31@2|Bacteria,1PJYJ@1224|Proteobacteria,439JR@68525|delta/epsilon subdivisions,2X4WC@28221|Deltaproteobacteria,2YZQV@29|Myxococcales 28221|Deltaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2533277_3 1123399.AQVE01000009_gene3072 7.287e-05 49.0 COG0105@1|root,COG0105@2|Bacteria,1R9ZA@1224|Proteobacteria,1S1Z3@1236|Gammaproteobacteria,460K8@72273|Thiotrichales 72273|Thiotrichales F Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate ndk - 2.7.4.6 ko:K00940 ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016 M00049,M00050,M00052,M00053 R00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895 RC00002 ko00000,ko00001,ko00002,ko01000,ko04131 - - - NDK SRR25158195_k127_2533277_2 391008.Smal_1655 1.102e-128 414.0 COG1309@1|root,COG1309@2|Bacteria,1RDIM@1224|Proteobacteria,1S401@1236|Gammaproteobacteria,1X396@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - TetR_N SRR25158195_k127_2533277_0 522373.Smlt2052 0.0 1580.0 COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,1RMZ8@1236|Gammaproteobacteria,1X4BT@135614|Xanthomonadales 135614|Xanthomonadales I 3-hydroxyacyl-coa dehydrogenase fadB - 1.1.1.35 ko:K07516 ko00071,ko00362,ko00650,ko01100,ko01120,ko01200,ko01212,map00071,map00362,map00650,map01100,map01120,map01200,map01212 M00087 R01975,R04737,R04739,R04741,R04743,R04745,R04748,R05305 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000 - - - 3HCDH,3HCDH_N,ECH_1 SRR25158195_k127_2533277_1 522373.Smlt2051 1.914e-221 691.0 COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,1RM93@1236|Gammaproteobacteria,1X32A@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation fadA - 2.3.1.16 ko:K00632 ko00071,ko00280,ko00281,ko00362,ko00592,ko00642,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00362,map00592,map00642,map01100,map01110,map01120,map01130,map01212 M00087,M00113 R00829,R00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747,R05506,R05586,R07891,R07895,R07899,R08091,R08095 RC00004,RC00326,RC00405,RC01702,RC02728,RC02898,RC02955 ko00000,ko00001,ko00002,ko01000 - - - Thiolase_C,Thiolase_N SRR25158195_k127_2536929_3 1121013.P873_03040 3.983e-93 316.0 COG4262@1|root,COG4262@2|Bacteria,1QXYI@1224|Proteobacteria,1T3KR@1236|Gammaproteobacteria,1X8H2@135614|Xanthomonadales 135614|Xanthomonadales S Spermine/spermidine synthase domain - - - - - - - - - - - - Spermine_synth SRR25158195_k127_2536929_5 863365.XHC_3384 1.848e-24 117.0 COG4969@1|root,COG4969@2|Bacteria,1N7EQ@1224|Proteobacteria,1SCES@1236|Gammaproteobacteria 1236|Gammaproteobacteria NU Belongs to the N-Me-Phe pilin family pilA - - ko:K02650,ko:K02655 ko02020,map02020 - - - ko00000,ko00001,ko02035,ko02044 3.A.15.2 - - N_methyl,Pilin SRR25158195_k127_2536929_0 522373.Smlt3759 3.862e-238 742.0 COG1459@1|root,COG1459@2|Bacteria,1MV4U@1224|Proteobacteria,1RNV0@1236|Gammaproteobacteria,1X49V@135614|Xanthomonadales 135614|Xanthomonadales U Type II secretory pathway pilC - - ko:K02653 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSF SRR25158195_k127_2536929_1 391008.Smal_3178 2.275e-193 602.0 COG1989@1|root,COG1989@2|Bacteria,1MUZF@1224|Proteobacteria,1RN90@1236|Gammaproteobacteria,1X2XE@135614|Xanthomonadales 135614|Xanthomonadales NOU Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue pilD - 3.4.23.43 ko:K02654 - M00331 - - ko00000,ko00002,ko01000,ko01002,ko02035,ko02044 3.A.15.2 - - DiS_P_DiS,Peptidase_A24 SRR25158195_k127_2536929_2 391008.Smal_3179 3.438e-107 349.0 COG0237@1|root,COG0237@2|Bacteria,1RCXT@1224|Proteobacteria,1S3NR@1236|Gammaproteobacteria,1X6CC@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A coaE GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 ko:K00859 ko00770,ko01100,map00770,map01100 M00120 R00130 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - CoaE SRR25158195_k127_2544682_1 522373.Smlt2064 6.919e-153 487.0 COG0476@1|root,COG0607@1|root,COG0476@2|Bacteria,COG0607@2|Bacteria,1MW7H@1224|Proteobacteria,1RPJ3@1236|Gammaproteobacteria,1X3YQ@135614|Xanthomonadales 135614|Xanthomonadales H ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase moeB - - - - - - - - - - - Rhodanese,ThiF SRR25158195_k127_2544682_0 522373.Smlt2060 3.03e-294 904.0 COG1160@1|root,COG1160@2|Bacteria,1MU9S@1224|Proteobacteria,1RMSF@1236|Gammaproteobacteria,1X3PK@135614|Xanthomonadales 135614|Xanthomonadales S GTPase that plays an essential role in the late steps of ribosome biogenesis der - - ko:K03977 - - - - ko00000,ko03009 - - - KH_dom-like,MMR_HSR1 SRR25158195_k127_2544682_2 1429851.X548_07195 1.236e-72 245.0 COG1520@1|root,COG1520@2|Bacteria,1MXIJ@1224|Proteobacteria,1RN4V@1236|Gammaproteobacteria,1X43X@135614|Xanthomonadales 135614|Xanthomonadales M Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamB GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114 - ko:K17713 - - - - ko00000,ko02000 1.B.33.1 - - PQQ_2,PQQ_3 SRR25158195_k127_2548432_3 522373.Smlt1194 5.278e-211 659.0 COG0673@1|root,COG0673@2|Bacteria,1MW0Q@1224|Proteobacteria,1RYT2@1236|Gammaproteobacteria,1X4Z6@135614|Xanthomonadales 135614|Xanthomonadales S D-galactose 1-dehydrogenase dgd - 1.1.1.48 ko:K00035 ko00052,ko01100,map00052,map01100 - R01094,R01097 RC00161 ko00000,ko00001,ko01000 - - - GFO_IDH_MocA SRR25158195_k127_2548432_1 1429851.X548_03800 2.085e-249 771.0 COG2211@1|root,COG2211@2|Bacteria,1MWI9@1224|Proteobacteria,1RMU5@1236|Gammaproteobacteria,1X57N@135614|Xanthomonadales 135614|Xanthomonadales G COG0477 Permeases of the major facilitator superfamily - - - ko:K11537 - - - - ko00000,ko02000 2.A.1.10.2 - - Nuc_H_symport SRR25158195_k127_2548432_2 522373.Smlt1196 2.546e-225 699.0 COG1082@1|root,COG1082@2|Bacteria,1MVSJ@1224|Proteobacteria,1RRKK@1236|Gammaproteobacteria,1X42U@135614|Xanthomonadales 135614|Xanthomonadales G AP endonuclease family 2 C terminus - - - - - - - - - - - - AP_endonuc_2,AP_endonuc_2_N SRR25158195_k127_2548432_4 522373.Smlt1197 1.965e-195 613.0 COG1609@1|root,COG1609@2|Bacteria,1MVUR@1224|Proteobacteria,1RN8T@1236|Gammaproteobacteria,1X6RY@135614|Xanthomonadales 135614|Xanthomonadales K Periplasmic binding protein domain - - - ko:K05499 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 SRR25158195_k127_2548432_5 522373.Smlt1199 3.921e-191 602.0 COG0628@1|root,COG0628@2|Bacteria,1MW34@1224|Proteobacteria,1RPNK@1236|Gammaproteobacteria,1X4WP@135614|Xanthomonadales 135614|Xanthomonadales S AI-2E family transporter - - - - - - - - - - - - AI-2E_transport SRR25158195_k127_2548432_0 522373.Smlt1200 3.426e-291 901.0 COG2199@1|root,COG2199@2|Bacteria,1R4QY@1224|Proteobacteria,1S8PM@1236|Gammaproteobacteria,1XCB6@135614|Xanthomonadales 135614|Xanthomonadales T diguanylate cyclase - - - - - - - - - - - - GGDEF SRR25158195_k127_2548432_6 391008.Smal_1058 5.533e-76 256.0 COG1670@1|root,COG1670@2|Bacteria,1PY0X@1224|Proteobacteria,1S725@1236|Gammaproteobacteria,1XC04@135614|Xanthomonadales 135614|Xanthomonadales J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 SRR25158195_k127_255029_0 522373.Smlt1783 1.82e-191 604.0 COG0166@1|root,COG0166@2|Bacteria,1MUFP@1224|Proteobacteria,1RNIT@1236|Gammaproteobacteria,1X3XZ@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the GPI family pgi - 5.3.1.9 ko:K01810 ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200 M00001,M00004,M00114 R02739,R02740,R03321 RC00376,RC00563 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGI SRR25158195_k127_255029_5 522373.Smlt1782 7.516e-72 250.0 COG0853@1|root,COG0853@2|Bacteria,1RI1B@1224|Proteobacteria,1S66E@1236|Gammaproteobacteria,1X6I2@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine panD - 4.1.1.11 ko:K01579 ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110 M00119 R00489 RC00299 ko00000,ko00001,ko00002,ko01000 - - - Asp_decarbox SRR25158195_k127_255029_1 522373.Smlt1780 1.322e-170 537.0 COG0414@1|root,COG0414@2|Bacteria,1MV1S@1224|Proteobacteria,1RMEG@1236|Gammaproteobacteria,1X3FN@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate panC GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 ko:K01918 ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110 M00119 R02473 RC00096,RC00141 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_ligase SRR25158195_k127_255029_2 391008.Smal_1517 3.137e-166 524.0 COG0413@1|root,COG0413@2|Bacteria,1MU3B@1224|Proteobacteria,1RM8D@1236|Gammaproteobacteria,1X3R8@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate panB - 2.1.2.11 ko:K00606 ko00770,ko01100,ko01110,map00770,map01100,map01110 M00119 R01226 RC00022,RC00200 ko00000,ko00001,ko00002,ko01000 - - - Pantoate_transf SRR25158195_k127_255029_4 391008.Smal_1516 2.037e-89 295.0 COG0801@1|root,COG0801@2|Bacteria,1MZH8@1224|Proteobacteria,1S63J@1236|Gammaproteobacteria,1X6UH@135614|Xanthomonadales 135614|Xanthomonadales H 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase folK2 - 2.7.6.3 ko:K00950 ko00790,ko01100,map00790,map01100 M00126,M00841 R03503 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - HPPK SRR25158195_k127_255029_3 522373.Smlt1777 6.809e-165 521.0 COG0617@1|root,COG0617@2|Bacteria,1MVCS@1224|Proteobacteria,1RMBG@1236|Gammaproteobacteria,1X3TM@135614|Xanthomonadales 135614|Xanthomonadales H Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control pcnB - 2.7.7.19 ko:K00970 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PolyA_pol,PolyA_pol_RNAbd,PolyA_pol_arg_C SRR25158195_k127_2556901_1 1429851.X548_09805 1.264e-33 131.0 COG3149@1|root,COG3149@2|Bacteria,1N133@1224|Proteobacteria,1SV5N@1236|Gammaproteobacteria 1236|Gammaproteobacteria U Type II secretion system (T2SS), protein M - - - ko:K02462 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSM SRR25158195_k127_2556901_0 391008.Smal_2211 1.013e-236 736.0 COG1450@1|root,COG4796@1|root,COG1450@2|Bacteria,COG4796@2|Bacteria,1MUUA@1224|Proteobacteria,1RPJS@1236|Gammaproteobacteria,1X4RY@135614|Xanthomonadales 135614|Xanthomonadales NU secretion system protein xcsD - - ko:K02453 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - Secretin,Secretin_N SRR25158195_k127_2560871_2 522373.Smlt0783 6.652e-75 252.0 COG1988@1|root,COG1988@2|Bacteria,1QK5N@1224|Proteobacteria,1S0MU@1236|Gammaproteobacteria,1X507@135614|Xanthomonadales 135614|Xanthomonadales S membrane-bound metal-dependent - - - ko:K07038 - - - - ko00000 - - - YdjM SRR25158195_k127_2560871_1 391008.Smal_0632 1.022e-163 526.0 COG2908@1|root,COG2908@2|Bacteria,1MVKD@1224|Proteobacteria,1RQIA@1236|Gammaproteobacteria,1X305@135614|Xanthomonadales 135614|Xanthomonadales S Calcineurin-like phosphoesterase superfamily domain - - - - - - - - - - - - Metallophos,Metallophos_2 SRR25158195_k127_2560871_0 522373.Smlt0781 0.0 1047.0 COG0204@1|root,COG3176@1|root,COG0204@2|Bacteria,COG3176@2|Bacteria,1MWIM@1224|Proteobacteria,1RQD4@1236|Gammaproteobacteria,1X4B8@135614|Xanthomonadales 135614|Xanthomonadales I Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_5,Acyltransferase SRR25158195_k127_2562466_0 1118235.CAJH01000023_gene1505 5.148e-301 932.0 COG0676@1|root,COG2951@1|root,COG3409@1|root,COG0676@2|Bacteria,COG2951@2|Bacteria,COG3409@2|Bacteria,1MUZ3@1224|Proteobacteria,1RMQ6@1236|Gammaproteobacteria,1X3YN@135614|Xanthomonadales 135614|Xanthomonadales M Lytic murein transglycosylase - - 5.1.3.15 ko:K01792 ko00010,ko01100,ko01110,ko01120,ko01130,map00010,map01100,map01110,map01120,map01130 - R02739 RC00563 ko00000,ko00001,ko01000 - - - Aldose_epim,PG_binding_1,SLT_2 SRR25158195_k127_2574185_0 522373.Smlt2304 1.552e-159 512.0 COG1344@1|root,COG1344@2|Bacteria,1MV1N@1224|Proteobacteria,1RN0Y@1236|Gammaproteobacteria,1X3H3@135614|Xanthomonadales 135614|Xanthomonadales N Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella fliC - - ko:K02406 ko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134 - - - ko00000,ko00001,ko02035 - - - Flagellin_C,Flagellin_IN,Flagellin_N SRR25158195_k127_2574185_1 522373.Smlt2306 1.067e-90 307.0 COG1344@1|root,COG1344@2|Bacteria,1MV1N@1224|Proteobacteria,1RN0Y@1236|Gammaproteobacteria,1X3H3@135614|Xanthomonadales 135614|Xanthomonadales N Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella fliC - - ko:K02406 ko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134 - - - ko00000,ko00001,ko02035 - - - Flagellin_C,Flagellin_IN,Flagellin_N SRR25158195_k127_2580593_1 522373.Smlt0731 1.435e-194 608.0 COG0611@1|root,COG0611@2|Bacteria,1MU9X@1224|Proteobacteria,1RNHU@1236|Gammaproteobacteria,1X3WP@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 thiL - 2.7.4.16 ko:K00946 ko00730,ko01100,map00730,map01100 M00127 R00617 RC00002 ko00000,ko00001,ko00002,ko01000 - - - AIRS,AIRS_C SRR25158195_k127_2580593_0 522373.Smlt0738 8.931e-279 859.0 COG0277@1|root,COG0277@2|Bacteria,1MU6Y@1224|Proteobacteria,1RQX2@1236|Gammaproteobacteria,1X3SQ@135614|Xanthomonadales 135614|Xanthomonadales C FAD FMN-containing dehydrogenases dld - 1.1.2.4,1.1.5.12 ko:K00102,ko:K03777 ko00620,ko01120,map00620,map01120 - R00197,R00704,R11591 RC00044 ko00000,ko00001,ko01000 - - - FAD-oxidase_C,FAD_binding_4 SRR25158195_k127_2583139_1 391008.Smal_3630 0.0 1158.0 COG4232@1|root,COG4232@2|Bacteria,1MU8W@1224|Proteobacteria,1RPF7@1236|Gammaproteobacteria,1X43V@135614|Xanthomonadales 135614|Xanthomonadales CO Thiol disulfide Interchange Protein dsbD - 1.8.1.8 ko:K04084 - - - - ko00000,ko01000,ko03110 5.A.1.1 - - DsbC,DsbD,Thioredoxin_7 SRR25158195_k127_2583139_4 391008.Smal_3631 3.58e-90 301.0 COG0526@1|root,COG0526@2|Bacteria,1MZ5J@1224|Proteobacteria,1SASG@1236|Gammaproteobacteria,1X798@135614|Xanthomonadales 135614|Xanthomonadales CO COG0526 Thiol-disulfide isomerase and thioredoxins - - - - - - - - - - - - AhpC-TSA,Redoxin SRR25158195_k127_2583139_3 1121127.JAFA01000034_gene4468 1.875e-103 349.0 COG0454@1|root,COG1846@1|root,COG0456@2|Bacteria,COG1846@2|Bacteria,1MWIC@1224|Proteobacteria,2VI7E@28216|Betaproteobacteria,1K018@119060|Burkholderiaceae 28216|Betaproteobacteria K Regulatory protein MarR - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_10,MarR_2 SRR25158195_k127_2583139_0 1211114.ALIP01000113_gene856 0.0 1373.0 COG1629@1|root,COG4771@2|Bacteria,1MUNK@1224|Proteobacteria,1RN9S@1236|Gammaproteobacteria,1X4DH@135614|Xanthomonadales 135614|Xanthomonadales P TonB-dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_2583139_2 391008.Smal_3632 9.629e-314 966.0 COG0369@1|root,COG3182@1|root,COG0369@2|Bacteria,COG3182@2|Bacteria,1MWYV@1224|Proteobacteria,1RY05@1236|Gammaproteobacteria,1X599@135614|Xanthomonadales 135614|Xanthomonadales P iron-uptake factor piuB - 1.8.1.2 ko:K00380 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00176 R00858 RC00065 ko00000,ko00001,ko00002,ko01000 - - - Flavodoxin_1,NAD_binding_1,PepSY_TM SRR25158195_k127_2584795_0 1442599.JAAN01000042_gene3059 1.866e-277 865.0 COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,1RYK4@1236|Gammaproteobacteria,1X3CR@135614|Xanthomonadales 135614|Xanthomonadales V Beta-lactamase - - - - - - - - - - - - Beta-lactamase SRR25158195_k127_2584795_2 1442599.JAAN01000042_gene3060 1.492e-119 388.0 COG1396@1|root,COG1396@2|Bacteria,1R6PS@1224|Proteobacteria,1T24B@1236|Gammaproteobacteria,1X5S2@135614|Xanthomonadales 135614|Xanthomonadales K Cro/C1-type HTH DNA-binding domain - - - - - - - - - - - - Cupin_2,HTH_31 SRR25158195_k127_2584795_1 1157708.KB907461_gene1551 3.169e-174 549.0 COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,2VIA3@28216|Betaproteobacteria 28216|Betaproteobacteria K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2584795_3 1094184.KWO_0107615 4.273e-19 87.0 COG3631@1|root,COG3631@2|Bacteria,1N76G@1224|Proteobacteria,1SCNX@1236|Gammaproteobacteria,1XB74@135614|Xanthomonadales 135614|Xanthomonadales S Ketosteroid isomerase-related protein - - - - - - - - - - - - - SRR25158195_k127_2585966_1 391008.Smal_0961 2.057e-167 528.0 COG0766@1|root,COG0766@2|Bacteria,1MUH7@1224|Proteobacteria,1RN91@1236|Gammaproteobacteria,1X48Z@135614|Xanthomonadales 135614|Xanthomonadales M Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine murA - 2.5.1.7 ko:K00790 ko00520,ko00550,ko01100,map00520,map00550,map01100 - R00660 RC00350 ko00000,ko00001,ko01000,ko01011 - - - EPSP_synthase SRR25158195_k127_2585966_6 391008.Smal_0960 7.392e-43 156.0 COG5007@1|root,COG5007@2|Bacteria,1R3MK@1224|Proteobacteria,1SE4M@1236|Gammaproteobacteria,1X7EE@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the BolA IbaG family SN15_13775 - - - - - - - - - - - BolA SRR25158195_k127_2585966_0 391008.Smal_0959 1.812e-187 589.0 COG0517@1|root,COG0794@1|root,COG0517@2|Bacteria,COG0794@2|Bacteria,1MUXD@1224|Proteobacteria,1RMT9@1236|Gammaproteobacteria,1X3K3@135614|Xanthomonadales 135614|Xanthomonadales M Arabinose 5-phosphate isomerase kdsD - 5.3.1.13 ko:K06041 ko00540,ko01100,map00540,map01100 M00063 R01530 RC00541 ko00000,ko00001,ko00002,ko01000,ko01005 - - - CBS,SIS SRR25158195_k127_2585966_4 391008.Smal_0958 1.453e-108 353.0 COG1778@1|root,COG1778@2|Bacteria,1RH85@1224|Proteobacteria,1S6D0@1236|Gammaproteobacteria,1X6HQ@135614|Xanthomonadales 135614|Xanthomonadales S Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate kdsC - 3.1.3.45 ko:K03270 ko00540,ko01100,map00540,map01100 M00063 R03350 RC00017 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Hydrolase_3 SRR25158195_k127_2585966_3 522373.Smlt1115 5.462e-118 381.0 COG3117@1|root,COG3117@2|Bacteria,1NGCC@1224|Proteobacteria,1SGDP@1236|Gammaproteobacteria,1X75G@135614|Xanthomonadales 135614|Xanthomonadales S Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA lptC - - ko:K11719 - - - - ko00000,ko02000 1.B.42.1 - - LptC SRR25158195_k127_2585966_5 522373.Smlt1114 4.036e-95 315.0 COG1934@1|root,COG1934@2|Bacteria,1N3J5@1224|Proteobacteria,1SBBI@1236|Gammaproteobacteria,1X7U2@135614|Xanthomonadales 135614|Xanthomonadales S Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm lptA - - ko:K09774 - - - - ko00000,ko02000 1.B.42.1 - - OstA SRR25158195_k127_2585966_2 1429851.X548_03380 2.017e-140 451.0 COG1137@1|root,COG1137@2|Bacteria,1MU8M@1224|Proteobacteria,1RPW1@1236|Gammaproteobacteria,1X31A@135614|Xanthomonadales 135614|Xanthomonadales S abc transporter atp-binding protein lptB - - ko:K06861 ko02010,map02010 M00320 - - ko00000,ko00001,ko00002,ko01000,ko02000 1.B.42.1 - - ABC_tran,BCA_ABC_TP_C SRR25158195_k127_2586756_0 522373.Smlt1707 1.164e-287 883.0 COG2939@1|root,COG2939@2|Bacteria,1MW05@1224|Proteobacteria,1RQJY@1236|Gammaproteobacteria,1X3XV@135614|Xanthomonadales 135614|Xanthomonadales M Carboxypeptidase - - - - - - - - - - - - Peptidase_S10 SRR25158195_k127_2586756_1 522373.Smlt1706 2.892e-236 732.0 COG0306@1|root,COG0306@2|Bacteria,1MVXK@1224|Proteobacteria,1RP0Q@1236|Gammaproteobacteria,1X3YD@135614|Xanthomonadales 135614|Xanthomonadales P phosphate transporter pitA - - ko:K03306 - - - - ko00000 2.A.20 - - PHO4 SRR25158195_k127_2589626_1 522373.Smlt4579 1.551e-113 369.0 COG1595@1|root,COG1595@2|Bacteria,1MVPD@1224|Proteobacteria,1S5DM@1236|Gammaproteobacteria,1XB2G@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_2589626_0 1429851.X548_18495 9.556e-196 614.0 COG1271@1|root,COG1271@2|Bacteria,1MV60@1224|Proteobacteria,1RN2U@1236|Gammaproteobacteria,1X4FJ@135614|Xanthomonadales 135614|Xanthomonadales C oxidase, subunit - - 1.10.3.14 ko:K00425 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00153 R11325 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - Cyt_bd_oxida_I SRR25158195_k127_2590593_1 391008.Smal_1439 3.61e-77 261.0 COG3871@1|root,COG3871@2|Bacteria,1RF7K@1224|Proteobacteria,1S51P@1236|Gammaproteobacteria,1X7P1@135614|Xanthomonadales 135614|Xanthomonadales S general stress protein - - - - - - - - - - - - Pyrid_ox_like SRR25158195_k127_2590593_0 522373.Smlt1700 2.241e-213 664.0 COG2141@1|root,COG2141@2|Bacteria,1MVF0@1224|Proteobacteria,1RMCE@1236|Gammaproteobacteria,1X3Z8@135614|Xanthomonadales 135614|Xanthomonadales C Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - - - - - - - - - - Bac_luciferase SRR25158195_k127_2591579_3 391008.Smal_4003 5.416e-40 150.0 COG4913@1|root,COG4913@2|Bacteria,1N16Z@1224|Proteobacteria,1RPTX@1236|Gammaproteobacteria,1X354@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - AAA_29,SbcCD_C SRR25158195_k127_2591579_2 1552758.NC00_00035 3.16e-86 297.0 2BW5S@1|root,2Z8JM@2|Bacteria,1R3MV@1224|Proteobacteria,1S1QY@1236|Gammaproteobacteria,1X65M@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4194) - - - - - - - - - - - - DUF4194 SRR25158195_k127_2591579_0 391008.Smal_4005 2.321e-297 919.0 COG4942@1|root,COG4942@2|Bacteria,1MXRZ@1224|Proteobacteria,1RR9E@1236|Gammaproteobacteria,1X3HU@135614|Xanthomonadales 135614|Xanthomonadales D Protein of unknown function (DUF3375) - - - - - - - - - - - - DUF3375 SRR25158195_k127_2591579_1 391008.Smal_4006 1.031e-129 419.0 COG0302@1|root,COG0302@2|Bacteria,1MY3N@1224|Proteobacteria,1RMQM@1236|Gammaproteobacteria,1X3YF@135614|Xanthomonadales 135614|Xanthomonadales F GTP cyclohydrolase folE GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 ko:K01495 ko00790,ko01100,map00790,map01100 M00126,M00841,M00842,M00843 R00428,R04639,R05046,R05048 RC00263,RC00294,RC00323,RC00945,RC01188 ko00000,ko00001,ko00002,ko01000 - - - GTP_cyclohydroI SRR25158195_k127_2593395_1 290397.Adeh_4217 4.325e-103 353.0 COG0784@1|root,COG2203@1|root,COG4191@1|root,COG0784@2|Bacteria,COG2203@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,42MIZ@68525|delta/epsilon subdivisions,2X2UJ@28221|Deltaproteobacteria,2YZ7G@29|Myxococcales 28221|Deltaproteobacteria T histidine kinase A domain protein - - - - - - - - - - - - HATPase_c,HisKA,PAS_4,Response_reg SRR25158195_k127_2593395_0 404589.Anae109_4038 1.882e-162 522.0 COG1793@1|root,COG1793@2|Bacteria,1R4SI@1224|Proteobacteria,438FV@68525|delta/epsilon subdivisions,2X3QT@28221|Deltaproteobacteria,2YWVJ@29|Myxococcales 28221|Deltaproteobacteria L ATP dependent DNA ligase domain protein - - - - - - - - - - - - DNA_ligase_A_C,DNA_ligase_A_M SRR25158195_k127_2593395_2 215803.DB30_0812 2.165e-23 107.0 COG5592@1|root,COG5592@2|Bacteria,1ND3D@1224|Proteobacteria,42WES@68525|delta/epsilon subdivisions,2WSA6@28221|Deltaproteobacteria,2Z01U@29|Myxococcales 28221|Deltaproteobacteria S Hemerythrin HHE cation binding domain - - - - - - - - - - - - Hemerythrin SRR25158195_k127_2602738_2 522373.Smlt0525 4.612e-108 353.0 COG4943@1|root,COG4943@2|Bacteria,1MVTH@1224|Proteobacteria,1RMDP@1236|Gammaproteobacteria,1X4HG@135614|Xanthomonadales 135614|Xanthomonadales T signal transduction protein containing sensor and EAL domains - - - - - - - - - - - - CSS-motif,EAL SRR25158195_k127_2602738_0 391008.Smal_0405 5.17e-278 862.0 COG1113@1|root,COG1113@2|Bacteria,1MUPS@1224|Proteobacteria,1RPFT@1236|Gammaproteobacteria,1X392@135614|Xanthomonadales 135614|Xanthomonadales E Gamma-aminobutyrate permease and related permeases cycA - - ko:K11737 - - - - ko00000,ko02000 2.A.3.1.7 - - AA_permease SRR25158195_k127_2602738_1 1429851.X548_00545 5.724e-151 479.0 COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,1S8R3@1236|Gammaproteobacteria,1X3FU@135614|Xanthomonadales 135614|Xanthomonadales M Transglycosylase SLT domain - - - - - - - - - - - - SLT SRR25158195_k127_2602738_3 1429851.X548_09630 9.088e-58 217.0 COG4782@1|root,COG4782@2|Bacteria,1P5TI@1224|Proteobacteria 1224|Proteobacteria S Protein conserved in bacteria - - - - - - - - - - - - - SRR25158195_k127_2606444_10 522373.Smlt4463 4.988e-37 144.0 COG0500@1|root,COG2226@2|Bacteria,1PA5F@1224|Proteobacteria,1RY7A@1236|Gammaproteobacteria,1X53I@135614|Xanthomonadales 135614|Xanthomonadales H Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway bioC - 2.1.1.197 ko:K02169 ko00780,ko01100,map00780,map01100 M00572 R09543 RC00003,RC00460 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_11 SRR25158195_k127_2606444_5 522373.Smlt4462 3.653e-153 485.0 COG1028@1|root,COG1028@2|Bacteria,1MWJI@1224|Proteobacteria,1RY5G@1236|Gammaproteobacteria,1X7AZ@135614|Xanthomonadales 135614|Xanthomonadales IQ Enoyl-(Acyl carrier protein) reductase - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 SRR25158195_k127_2606444_4 391008.Smal_3829 3.366e-153 485.0 COG2267@1|root,COG2267@2|Bacteria,1N2R9@1224|Proteobacteria,1T1K8@1236|Gammaproteobacteria,1X3DZ@135614|Xanthomonadales 135614|Xanthomonadales I The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters bioH - 3.1.1.85 ko:K02170 ko00780,ko01100,map00780,map01100 M00572 R09725 RC00460,RC00461 ko00000,ko00001,ko00002,ko01000 - - - Abhydrolase_1,Abhydrolase_6 SRR25158195_k127_2606444_2 522373.Smlt4460 1.909e-235 735.0 COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,1RNS6@1236|Gammaproteobacteria,1X31B@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide bioF - 2.3.1.47 ko:K00652 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R03210,R10124 RC00004,RC00039,RC02725 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_1_2 SRR25158195_k127_2606444_3 522373.Smlt4459 1.132e-216 675.0 COG0502@1|root,COG0502@2|Bacteria,1MVFF@1224|Proteobacteria,1RMEQ@1236|Gammaproteobacteria,1X3XQ@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism bioB - 2.8.1.6 ko:K01012 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R01078 RC00441 ko00000,ko00001,ko00002,ko01000 - - - BATS,Radical_SAM SRR25158195_k127_2606444_1 391008.Smal_3825 3.311e-265 821.0 COG0038@1|root,COG0038@2|Bacteria,1MV4K@1224|Proteobacteria,1RQJW@1236|Gammaproteobacteria,1X4BH@135614|Xanthomonadales 135614|Xanthomonadales P chloride channel clcA - - - - - - - - - - - Voltage_CLC SRR25158195_k127_2606444_6 391008.Smal_3823 9.463e-126 406.0 COG1040@1|root,COG1040@2|Bacteria,1RHAV@1224|Proteobacteria,1S64Q@1236|Gammaproteobacteria,1X691@135614|Xanthomonadales 135614|Xanthomonadales S competence protein comF - - - - - - - - - - - Pribosyltran SRR25158195_k127_2606444_7 522373.Smlt4441 2.347e-99 326.0 COG3247@1|root,COG3247@2|Bacteria,1RH69@1224|Proteobacteria,1SAIB@1236|Gammaproteobacteria,1X8JZ@135614|Xanthomonadales 135614|Xanthomonadales S Short repeat of unknown function (DUF308) - - - - - - - - - - - - DUF308 SRR25158195_k127_2606444_8 391008.Smal_3821 3.797e-63 230.0 COG0342@1|root,COG0342@2|Bacteria 2|Bacteria U P-P-bond-hydrolysis-driven protein transmembrane transporter activity secD GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - ko:K03072,ko:K12257 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 2.A.6.4,3.A.5.2,3.A.5.7 - - SecD_SecF,Sec_GG SRR25158195_k127_2606444_0 522373.Smlt4439 0.0 1086.0 COG0477@1|root,COG2814@2|Bacteria,1MVKJ@1224|Proteobacteria,1RMHJ@1236|Gammaproteobacteria,1XDA0@135614|Xanthomonadales 135614|Xanthomonadales EGP Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - ko:K08137 - - - - ko00000,ko02000 2.A.1.1.1 - - Sugar_tr SRR25158195_k127_2606444_9 522373.Smlt4438 3.068e-56 196.0 COG1820@1|root,COG1820@2|Bacteria,1MW8Y@1224|Proteobacteria,1RMRV@1236|Gammaproteobacteria,1X9C0@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the metallo-dependent hydrolases superfamily. NagA family - - 3.5.1.25 ko:K01443 ko00520,ko01130,map00520,map01130 - R02059 RC00166,RC00300 ko00000,ko00001,ko01000 - - - Amidohydro_1 SRR25158195_k127_2609464_1 522373.Smlt2758 3.05e-99 331.0 COG1640@1|root,COG1640@2|Bacteria,1QTVJ@1224|Proteobacteria,1RMJW@1236|Gammaproteobacteria,1X3KU@135614|Xanthomonadales 135614|Xanthomonadales G 4-alpha-glucanotransferase - - 2.4.1.25 ko:K00705 ko00500,ko01100,map00500,map01100 - R05196 RC00049 ko00000,ko00001,ko01000 - GH77 - Glyco_hydro_77 SRR25158195_k127_2609464_0 522373.Smlt2759 8.538e-169 531.0 COG0296@1|root,COG0296@2|Bacteria,1MVM7@1224|Proteobacteria,1RP2N@1236|Gammaproteobacteria,1X5G4@135614|Xanthomonadales 135614|Xanthomonadales G 4-alpha-D-((1- 4)-alpha-D-glucano)trehalose trehalohydrolase glgZ - 3.2.1.141 ko:K01236 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R09995,R11256 RC00049 ko00000,ko00001,ko00002,ko01000 - CBM48,GH13 - Alpha-amylase,CBM_48,DUF3459 SRR25158195_k127_2613174_0 522373.Smlt3652 8.704e-300 924.0 COG1680@1|root,COG1680@2|Bacteria,1MY01@1224|Proteobacteria,1RNUI@1236|Gammaproteobacteria,1X480@135614|Xanthomonadales 135614|Xanthomonadales V beta-lactamase ampC3 - 3.5.2.6 ko:K01467 ko01501,ko02020,map01501,map02020 M00628 R06363 RC01499 ko00000,ko00001,ko00002,ko01000 - - - Beta-lactamase SRR25158195_k127_2613174_1 522373.Smlt3651 2.405e-123 396.0 COG3202@1|root,COG3202@2|Bacteria,1MVP5@1224|Proteobacteria,1RNY6@1236|Gammaproteobacteria,1X4WT@135614|Xanthomonadales 135614|Xanthomonadales C Major Facilitator Superfamily - - - ko:K03301 - - - - ko00000 2.A.12 - - MFS_1,TLC SRR25158195_k127_261705_14 391008.Smal_1631 4.979e-32 125.0 COG0583@1|root,COG0583@2|Bacteria,1MWVU@1224|Proteobacteria,1RPT8@1236|Gammaproteobacteria,1X3T2@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_261705_4 522373.Smlt2028 2.641e-192 609.0 COG2855@1|root,COG2855@2|Bacteria,1MVIP@1224|Proteobacteria,1RPSG@1236|Gammaproteobacteria,1X4N9@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0324 family - - - - - - - - - - - - Cons_hypoth698 SRR25158195_k127_261705_1 391008.Smal_1629 2.053e-285 878.0 COG0513@1|root,COG0513@2|Bacteria,1MU49@1224|Proteobacteria,1RQ36@1236|Gammaproteobacteria,1XCGH@135614|Xanthomonadales 135614|Xanthomonadales L Belongs to the DEAD box helicase family dbpA - 3.6.4.13 ko:K05591 - - - - ko00000,ko01000,ko03009 - - - DEAD,DbpA,Helicase_C SRR25158195_k127_261705_12 1429851.X548_07030 3.979e-110 358.0 COG0503@1|root,COG0503@2|Bacteria,1MVZ6@1224|Proteobacteria,1S2N9@1236|Gammaproteobacteria,1X6DC@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis apt - 2.4.2.7 ko:K00759 ko00230,ko01100,map00230,map01100 - R00190,R01229,R04378 RC00063 ko00000,ko00001,ko01000,ko04147 - - - Pribosyltran SRR25158195_k127_261705_0 1429851.X548_07025 0.0 1573.0 COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,1RN5D@1236|Gammaproteobacteria,1X4FN@135614|Xanthomonadales 135614|Xanthomonadales G Glucose dehydrogenase - - 1.1.5.2 ko:K00117 ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130 - R06620 RC00066 ko00000,ko00001,ko01000 - - - PQQ,PQQ_2 SRR25158195_k127_261705_6 1429851.X548_07020 1.522e-167 529.0 COG1414@1|root,COG1414@2|Bacteria,1QYTM@1224|Proteobacteria,1RUTM@1236|Gammaproteobacteria,1X68N@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator pcaR - - ko:K02624 - - - - ko00000,ko03000 - - - HTH_IclR,IclR SRR25158195_k127_261705_13 1429851.X548_07015 4.446e-73 246.0 COG0599@1|root,COG0599@2|Bacteria,1RDSG@1224|Proteobacteria,1S3EQ@1236|Gammaproteobacteria,1X77W@135614|Xanthomonadales 135614|Xanthomonadales S 4-carboxymuconolactone decarboxylase pcaC - 4.1.1.44 ko:K01607 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 - R03470 RC00938 ko00000,ko00001,ko01000 - - - CMD SRR25158195_k127_261705_7 1429851.X548_07010 8.76e-159 512.0 COG0596@1|root,COG0596@2|Bacteria,1QTTN@1224|Proteobacteria,1RPZK@1236|Gammaproteobacteria,1X4GK@135614|Xanthomonadales 135614|Xanthomonadales S 3-oxoadipate enol-lactonase pcaD - 3.1.1.24 ko:K01055 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 M00568 R02991 RC00825 ko00000,ko00001,ko00002,ko01000 - - - Abhydrolase_1,CMD SRR25158195_k127_261705_2 1429851.X548_07005 1.666e-259 804.0 COG0015@1|root,COG0015@2|Bacteria,1MXNN@1224|Proteobacteria,1RS00@1236|Gammaproteobacteria,1X4KD@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the cycloisomerization of cis,cis-muconate pcaB - 5.5.1.2 ko:K01857 ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220 - R03307 RC00902 ko00000,ko00001,ko01000 - - - ADSL_C,Lyase_1 SRR25158195_k127_261705_11 1429851.X548_07000 3.816e-117 377.0 COG3485@1|root,COG3485@2|Bacteria,1MV3B@1224|Proteobacteria,1S8B3@1236|Gammaproteobacteria,1X7D9@135614|Xanthomonadales 135614|Xanthomonadales Q protocatechuate 3,4-dioxygenase pcaG - 1.13.11.3 ko:K00448 ko00362,ko00624,ko01100,ko01120,ko01220,map00362,map00624,map01100,map01120,map01220 - R01631,R03549 RC00388,RC00953 br01602,ko00000,ko00001,ko01000 - - - Dioxygenase_C SRR25158195_k127_261705_8 1429851.X548_06995 3.035e-158 500.0 COG3485@1|root,COG3485@2|Bacteria,1MUYX@1224|Proteobacteria,1RQHU@1236|Gammaproteobacteria,1X3TP@135614|Xanthomonadales 135614|Xanthomonadales Q protocatechuate 3,4-dioxygenase pcaH - 1.13.11.3 ko:K00449 ko00362,ko00624,ko01100,ko01120,ko01220,map00362,map00624,map01100,map01120,map01220 - R01631,R03549 RC00388,RC00953 br01602,ko00000,ko00001,ko01000 - - - Dioxygenase_C,PCDO_beta_N SRR25158195_k127_261705_3 1429851.X548_06990 1.069e-238 741.0 COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,1RM93@1236|Gammaproteobacteria,1X32A@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation pcaF - 2.3.1.174 ko:K07823 ko00362,ko01120,map00362,map01120 - R00829 RC00004,RC00326 ko00000,ko00001,ko01000 - - - Thiolase_C,Thiolase_N SRR25158195_k127_261705_10 1429851.X548_06985 3.12e-131 421.0 COG2057@1|root,COG2057@2|Bacteria,1MWW1@1224|Proteobacteria,1T0Q2@1236|Gammaproteobacteria,1X4NQ@135614|Xanthomonadales 135614|Xanthomonadales I Coenzyme A transferase - - 2.8.3.6 ko:K01032 ko00362,ko01100,ko01120,map00362,map01100,map01120 - R02990 RC00014 ko00000,ko00001,ko01000 - - - CoA_trans SRR25158195_k127_261705_9 1429851.X548_06980 3.988e-136 434.0 COG1788@1|root,COG1788@2|Bacteria,1MVEI@1224|Proteobacteria,1RNXB@1236|Gammaproteobacteria,1X5ES@135614|Xanthomonadales 135614|Xanthomonadales I Coenzyme A transferase - - 2.8.3.6 ko:K01031 ko00362,ko01100,ko01120,map00362,map01100,map01120 - R02990 RC00014 ko00000,ko00001,ko01000 - - - CoA_trans SRR25158195_k127_261705_5 1429851.X548_06975 1.822e-176 554.0 COG0477@1|root,COG2814@2|Bacteria,1MVQQ@1224|Proteobacteria,1RNR4@1236|Gammaproteobacteria,1X604@135614|Xanthomonadales 135614|Xanthomonadales EGP Sugar (and other) transporter vanK - - - - - - - - - - - MFS_1,Sugar_tr SRR25158195_k127_2617836_2 391008.Smal_0635 2.639e-176 561.0 28HDP@1|root,2Z7Q8@2|Bacteria,1MXR8@1224|Proteobacteria,1S3FG@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2617836_1 522373.Smlt0786 7e-177 555.0 COG0500@1|root,COG2226@2|Bacteria,1R9JW@1224|Proteobacteria,1SGV6@1236|Gammaproteobacteria,1X4XI@135614|Xanthomonadales 135614|Xanthomonadales Q Methyltransferase - - - - - - - - - - - - Methyltransf_11 SRR25158195_k127_2617836_0 522373.Smlt0787 5.756e-211 656.0 COG0042@1|root,COG0042@2|Bacteria,1MV5V@1224|Proteobacteria,1RMJP@1236|Gammaproteobacteria,1X3G9@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines dusB - - ko:K05540 - - - - ko00000,ko01000,ko03016 - - - Dus SRR25158195_k127_2617836_3 1429851.X548_01785 1.034e-62 216.0 COG0524@1|root,COG0524@2|Bacteria,1MV5B@1224|Proteobacteria,1RNVY@1236|Gammaproteobacteria,1X4ZF@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway rbsK - 2.7.1.15 ko:K00852 ko00030,map00030 - R01051,R02750 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PfkB SRR25158195_k127_2621145_0 522373.Smlt4553 0.0 1004.0 COG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria,1SE9G@1236|Gammaproteobacteria,1X3VM@135614|Xanthomonadales 135614|Xanthomonadales S ankyrin repeat ank2 - - ko:K06867 - - - - ko00000 - - - Ank,Ank_2,Ank_4,Ank_5 SRR25158195_k127_2621145_3 1442599.JAAN01000041_gene3139 2.458e-25 109.0 COG3100@1|root,COG3100@2|Bacteria,1QB8I@1224|Proteobacteria,1T6ST@1236|Gammaproteobacteria,1X830@135614|Xanthomonadales 135614|Xanthomonadales S YcgL domain-containing protein - - - ko:K09902 - - - - ko00000 - - - YcgL SRR25158195_k127_2621145_2 391008.Smal_3907 1.921e-77 262.0 COG0393@1|root,COG0393@2|Bacteria,1N109@1224|Proteobacteria,1S9H4@1236|Gammaproteobacteria,1X7SF@135614|Xanthomonadales 135614|Xanthomonadales S excinuclease, ATPase subunit - - - - - - - - - - - - - SRR25158195_k127_2621145_1 391008.Smal_3908 3.6e-253 781.0 COG0304@1|root,COG0304@2|Bacteria,1MU1X@1224|Proteobacteria,1RQH7@1236|Gammaproteobacteria,1X3F6@135614|Xanthomonadales 135614|Xanthomonadales IQ Belongs to the beta-ketoacyl-ACP synthases family - - 2.3.1.179 ko:K09458 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119 RC00039,RC02728,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Ketoacyl-synt_C,ketoacyl-synt SRR25158195_k127_2629349_1 391008.Smal_1376 8.692e-75 251.0 COG1629@1|root,COG4771@2|Bacteria,1N6JG@1224|Proteobacteria,1RP10@1236|Gammaproteobacteria,1X3ZY@135614|Xanthomonadales 135614|Xanthomonadales P Oar protein - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec SRR25158195_k127_2629349_0 1429851.X548_05635 8.702e-301 923.0 COG1611@1|root,COG1611@2|Bacteria,1MVQJ@1224|Proteobacteria,1RQHX@1236|Gammaproteobacteria,1X3RE@135614|Xanthomonadales 135614|Xanthomonadales S Rossmann fold nucleotide-binding protein - - 3.2.2.10 ko:K06966 ko00230,ko00240,map00230,map00240 - R00182,R00510 RC00063,RC00318 ko00000,ko00001,ko01000 - - - DUF3412,DUF4478,Lysine_decarbox SRR25158195_k127_2629349_2 366649.XFF4834R_chr26670 1.917e-49 183.0 COG4970@1|root,COG4970@2|Bacteria,1N7RS@1224|Proteobacteria,1SCFB@1236|Gammaproteobacteria,1X7PF@135614|Xanthomonadales 135614|Xanthomonadales NU Type II transport protein GspH - - - ko:K08084 - - - - ko00000,ko02044 3.A.15.2 - - GspH,N_methyl SRR25158195_k127_2629349_3 1385515.N791_08745 4.165e-40 158.0 COG4967@1|root,COG4967@2|Bacteria,1QHAQ@1224|Proteobacteria,1T6XT@1236|Gammaproteobacteria,1X8DJ@135614|Xanthomonadales 135614|Xanthomonadales NU Prokaryotic N-terminal methylation motif pilV - - ko:K02671 - - - - ko00000,ko02035,ko02044 - - - N_methyl SRR25158195_k127_2629349_4 1385515.N791_08740 6.383e-29 118.0 COG4966@1|root,COG4966@2|Bacteria,1R5YK@1224|Proteobacteria,1RZIZ@1236|Gammaproteobacteria,1X5YK@135614|Xanthomonadales 135614|Xanthomonadales NU Type IV Pilus-assembly protein W - - - ko:K02672 - - - - ko00000,ko02035,ko02044 - - - N_methyl,PilW SRR25158195_k127_2640927_1 1429851.X548_01355 5.576e-250 782.0 COG0457@1|root,COG0457@2|Bacteria,1MVB8@1224|Proteobacteria,1RPSN@1236|Gammaproteobacteria,1X9DU@135614|Xanthomonadales 135614|Xanthomonadales S Cellulose synthase operon protein C C-terminus (BCSC_C) - - - ko:K20543 - - - - ko00000,ko02000 1.B.55.3 - - BCSC_C,TPR_16,TPR_19 SRR25158195_k127_2640927_0 1429851.X548_01350 0.0 999.0 COG1215@1|root,COG1215@2|Bacteria,1MWF8@1224|Proteobacteria,1RPJ6@1236|Gammaproteobacteria,1X51R@135614|Xanthomonadales 135614|Xanthomonadales M cellulose synthase - - - ko:K20541 - - - - ko00000,ko02000 4.D.3.1.6 - - BcsB SRR25158195_k127_2643317_2 1500890.JQNL01000001_gene1223 1.577e-74 254.0 COG0590@1|root,COG0590@2|Bacteria,1N2FE@1224|Proteobacteria,1S35R@1236|Gammaproteobacteria,1X5NY@135614|Xanthomonadales 135614|Xanthomonadales FJ Cytidine and deoxycytidylate deaminase zinc-binding region - - - - - - - - - - - - dCMP_cyt_deam_1 SRR25158195_k127_2643317_1 391008.Smal_0678 1.868e-230 714.0 COG2933@1|root,COG2933@2|Bacteria,1MWBM@1224|Proteobacteria,1RMSB@1236|Gammaproteobacteria,1X494@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily rlmM - 2.1.1.186 ko:K06968 - - - - ko00000,ko01000,ko03009 - - - FtsJ SRR25158195_k127_2643317_3 522373.Smlt0827 7.373e-57 213.0 2EUR7@1|root,33N6T@2|Bacteria,1QBH0@1224|Proteobacteria,1T727@1236|Gammaproteobacteria,1X8N7@135614|Xanthomonadales 135614|Xanthomonadales S EF hand - - - - - - - - - - - - EF-hand_5 SRR25158195_k127_2643317_0 522373.Smlt0826 8.131e-241 746.0 COG0654@1|root,COG0654@2|Bacteria,1MU6I@1224|Proteobacteria,1RND5@1236|Gammaproteobacteria,1X3DS@135614|Xanthomonadales 135614|Xanthomonadales CH Catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol visC - - ko:K03184,ko:K18800 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R04987,R06146,R08768,R08775 RC00046,RC01254 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_3,SE SRR25158195_k127_2652184_8 391008.Smal_4022 1.463e-105 344.0 COG0386@1|root,COG0386@2|Bacteria,1RD1R@1224|Proteobacteria,1S425@1236|Gammaproteobacteria,1X65U@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the glutathione peroxidase family btuE - 1.11.1.9 ko:K00432 ko00480,ko00590,ko04918,map00480,map00590,map04918 - R00274,R07034,R07035 RC00011,RC00982 ko00000,ko00001,ko01000 - - - GSHPx SRR25158195_k127_2652184_4 1429851.X548_19000 8.104e-161 512.0 COG2853@1|root,COG2853@2|Bacteria,1MVX0@1224|Proteobacteria,1RNPS@1236|Gammaproteobacteria,1X4B4@135614|Xanthomonadales 135614|Xanthomonadales M Lipoprotein - - - ko:K04754 - - - - ko00000 - - - MlaA SRR25158195_k127_2652184_11 522373.Smlt4674 1.224e-37 146.0 COG3113@1|root,COG3113@2|Bacteria,1NGIE@1224|Proteobacteria,1SD2Q@1236|Gammaproteobacteria,1X8IJ@135614|Xanthomonadales 135614|Xanthomonadales S Anti-sigma B factor antagonist - - - ko:K07122 ko02010,map02010 M00210 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27.3 - - STAS_2 SRR25158195_k127_2652184_7 522373.Smlt4673 5.39e-122 395.0 COG2854@1|root,COG2854@2|Bacteria,1N022@1224|Proteobacteria,1TA6U@1236|Gammaproteobacteria,1X35G@135614|Xanthomonadales 135614|Xanthomonadales Q toluene tolerance yrbC - - ko:K07323 ko02010,map02010 M00210 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27.3 - - MlaC SRR25158195_k127_2652184_9 391008.Smal_4018 9.915e-104 339.0 COG1463@1|root,COG1463@2|Bacteria,1NCUG@1224|Proteobacteria,1RQ0Y@1236|Gammaproteobacteria,1X5ZH@135614|Xanthomonadales 135614|Xanthomonadales Q ABC-type transport system involved in resistance to organic solvents periplasmic component yrbD - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD SRR25158195_k127_2652184_6 522373.Smlt4671 3.602e-146 469.0 COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,1RM9H@1236|Gammaproteobacteria,1X51X@135614|Xanthomonadales 135614|Xanthomonadales Q ABC-type transport system involved in resistance to organic solvents permease component yrbE - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE SRR25158195_k127_2652184_5 391008.Smal_4016 3.619e-156 498.0 COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,1RMCJ@1236|Gammaproteobacteria,1X3PT@135614|Xanthomonadales 135614|Xanthomonadales Q abc transporter atp-binding protein - - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran SRR25158195_k127_2652184_0 1429851.X548_18970 0.0 2037.0 COG1330@1|root,COG1330@2|Bacteria,1MWTI@1224|Proteobacteria,1RNT0@1236|Gammaproteobacteria,1X3D2@135614|Xanthomonadales 135614|Xanthomonadales L A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity recC - 3.1.11.5 ko:K03583 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_V_gamma SRR25158195_k127_2652184_1 391008.Smal_4014 0.0 1923.0 COG1074@1|root,COG1074@2|Bacteria,1MUTF@1224|Proteobacteria,1RPC6@1236|Gammaproteobacteria,1X3M3@135614|Xanthomonadales 135614|Xanthomonadales L A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA recB - 3.1.11.5 ko:K03582 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - PDDEXK_1,UvrD-helicase,UvrD_C SRR25158195_k127_2652184_3 391008.Smal_4013 0.0 1084.0 COG0507@1|root,COG0507@2|Bacteria,1MW43@1224|Proteobacteria,1RPA0@1236|Gammaproteobacteria,1X3QZ@135614|Xanthomonadales 135614|Xanthomonadales L A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD recD - 3.1.11.5 ko:K03581 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - AAA_19,AAA_30,UvrD_C_2,Viral_helicase1 SRR25158195_k127_2652184_10 1429851.X548_18950 1.518e-76 258.0 2DMWE@1|root,32UHT@2|Bacteria,1QCRQ@1224|Proteobacteria,1T8I3@1236|Gammaproteobacteria,1XAS0@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2652184_2 391008.Smal_4011 0.0 1189.0 COG1289@1|root,COG1289@2|Bacteria,1MX9H@1224|Proteobacteria,1RSD7@1236|Gammaproteobacteria,1X46U@135614|Xanthomonadales 135614|Xanthomonadales S Fusaric acid resistance protein - - - - - - - - - - - - FUSC SRR25158195_k127_266325_7 391008.Smal_3160 5.748e-132 421.0 COG4105@1|root,COG4105@2|Bacteria,1MVS5@1224|Proteobacteria,1RSE6@1236|Gammaproteobacteria,1X347@135614|Xanthomonadales 135614|Xanthomonadales M Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamD - - ko:K05807 - - - - ko00000,ko02000 1.B.33.1 - - YfiO SRR25158195_k127_266325_0 522373.Smlt3751 0.0 1071.0 COG0171@1|root,COG0388@1|root,COG0171@2|Bacteria,COG0388@2|Bacteria,1MU9U@1224|Proteobacteria,1RNKA@1236|Gammaproteobacteria,1X3Q1@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source nadE - 6.3.1.5,6.3.5.1 ko:K01916,ko:K01950 ko00760,ko01100,map00760,map01100 M00115 R00189,R00257 RC00010,RC00100 ko00000,ko00001,ko00002,ko01000 - - - CN_hydrolase,NAD_synthase SRR25158195_k127_266325_5 1429851.X548_14525 2.154e-181 569.0 COG0074@1|root,COG0074@2|Bacteria,1MUGA@1224|Proteobacteria,1RM7Y@1236|Gammaproteobacteria,1X36R@135614|Xanthomonadales 135614|Xanthomonadales C Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit sucD - 6.2.1.5 ko:K01902 ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R00405,R02404 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000 - - - CoA_binding,Ligase_CoA SRR25158195_k127_266325_4 743721.Psesu_0555 1.933e-237 736.0 COG0045@1|root,COG0045@2|Bacteria,1MVCE@1224|Proteobacteria,1RMSU@1236|Gammaproteobacteria,1X3IA@135614|Xanthomonadales 135614|Xanthomonadales C Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit sucC - 6.2.1.5 ko:K01903 ko00020,ko00640,ko00660,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map00660,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374,M00620 R00405,R02404 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp_2,Ligase_CoA SRR25158195_k127_266325_2 391008.Smal_3165 3.85e-322 994.0 COG0642@1|root,COG2205@2|Bacteria,1MXF8@1224|Proteobacteria,1RMMI@1236|Gammaproteobacteria,1X30G@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase pilS - 2.7.13.3 ko:K02668 ko02020,map02020 M00501 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - HATPase_c,HisKA,PAS_8 SRR25158195_k127_266325_3 522373.Smlt3755 9.879e-278 857.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,1RMCK@1236|Gammaproteobacteria,1X3DA@135614|Xanthomonadales 135614|Xanthomonadales T Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains pilR - - ko:K02667 ko02020,map02020 M00501 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - HTH_8,Response_reg,Sigma54_activat SRR25158195_k127_266325_1 1429851.X548_14545 0.0 1062.0 COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,1RMBS@1236|Gammaproteobacteria,1X3PA@135614|Xanthomonadales 135614|Xanthomonadales NU Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB pilB - - ko:K02652 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE,T2SSE_N SRR25158195_k127_266325_6 498211.CJA_2726 2.92e-134 452.0 COG0421@1|root,COG4262@1|root,COG0421@2|Bacteria,COG4262@2|Bacteria,1QVJA@1224|Proteobacteria,1RYYT@1236|Gammaproteobacteria,1FI1C@10|Cellvibrio 1236|Gammaproteobacteria E Spermine/spermidine synthase domain - - 2.5.1.16 ko:K00797 ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100 M00034,M00133 R01920,R02869,R08359 RC00021,RC00053 ko00000,ko00001,ko00002,ko01000 - - - Spermine_synth SRR25158195_k127_2665817_2 522373.Smlt1131 1.104e-07 57.0 COG3178@1|root,COG3178@2|Bacteria,1MXCH@1224|Proteobacteria,1RQ1Q@1236|Gammaproteobacteria,1X4P2@135614|Xanthomonadales 135614|Xanthomonadales S Phosphotransferase - - 2.7.1.221 ko:K07102 ko00520,ko01100,map00520,map01100 - R08968,R11024 RC00002,RC00078 ko00000,ko00001,ko01000 - - - APH SRR25158195_k127_2665817_1 522373.Smlt1132 6.451e-51 181.0 COG2261@1|root,COG2261@2|Bacteria,1N72W@1224|Proteobacteria,1SGV7@1236|Gammaproteobacteria,1X7QX@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - Transgly_assoc SRR25158195_k127_2665817_0 1429851.X548_03485 6.27e-242 747.0 COG0624@1|root,COG0624@2|Bacteria,1MW20@1224|Proteobacteria,1RPN7@1236|Gammaproteobacteria,1X4BQ@135614|Xanthomonadales 135614|Xanthomonadales E peptidase M20 - - - - - - - - - - - - M20_dimer,Peptidase_M20 SRR25158195_k127_2677879_0 1205753.A989_14342 0.0 1187.0 COG3523@1|root,COG3523@2|Bacteria,1MV3D@1224|Proteobacteria,1RPQ2@1236|Gammaproteobacteria,1X9RA@135614|Xanthomonadales 135614|Xanthomonadales S Type VI secretion protein IcmF C-terminal - - - ko:K11891 ko02025,ko03070,map02025,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - IcmF-related,IcmF_C,ImcF-related_N SRR25158195_k127_2679642_5 1429851.X548_20255 2.992e-85 283.0 COG1752@1|root,COG1752@2|Bacteria,1N9HS@1224|Proteobacteria,1SJQK@1236|Gammaproteobacteria,1X9SY@135614|Xanthomonadales 135614|Xanthomonadales S Patatin-like phospholipase - - - - - - - - - - - - Patatin SRR25158195_k127_2679642_0 1118235.CAJH01000038_gene2319 0.0 1272.0 COG0620@1|root,COG0620@2|Bacteria,1MUI9@1224|Proteobacteria,1RMBA@1236|Gammaproteobacteria,1X3BC@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation metE - 2.1.1.14 ko:K00549 ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230 M00017 R04405,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - Meth_synt_1,Meth_synt_2 SRR25158195_k127_2679642_3 391008.Smal_0215 4.57e-150 475.0 COG1636@1|root,COG1636@2|Bacteria,1MUG5@1224|Proteobacteria,1RPEH@1236|Gammaproteobacteria,1X53N@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) queH - 1.17.99.6 ko:K09765 - - - - ko00000,ko01000,ko03016 - - - DUF208 SRR25158195_k127_2679642_4 522373.Smlt0257 1.168e-122 398.0 COG1335@1|root,COG1335@2|Bacteria,1MUGW@1224|Proteobacteria,1RZBF@1236|Gammaproteobacteria,1X5BX@135614|Xanthomonadales 135614|Xanthomonadales Q COG1335 Amidases related to nicotinamidase - - 3.5.1.19 ko:K08281 ko00760,ko01100,map00760,map01100 - R01268 RC00100 ko00000,ko00001,ko01000 - - - Isochorismatase SRR25158195_k127_2679642_1 1429851.X548_20235 2.325e-175 552.0 COG0788@1|root,COG0788@2|Bacteria,1MVCF@1224|Proteobacteria,1RN6Q@1236|Gammaproteobacteria,1X3TS@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) purU - 3.5.1.10 ko:K01433 ko00630,ko00670,map00630,map00670 - R00944 RC00026,RC00111 ko00000,ko00001,ko01000 - - - ACT,ACT_6,Formyl_trans_N SRR25158195_k127_2679642_2 522373.Smlt0254 1.455e-152 484.0 COG0583@1|root,COG0583@2|Bacteria,1NSSK@1224|Proteobacteria,1RZBP@1236|Gammaproteobacteria,1X9AJ@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2683208_2 391008.Smal_1360 5.577e-22 94.0 COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,1S8R3@1236|Gammaproteobacteria,1XC67@135614|Xanthomonadales 135614|Xanthomonadales M transglycosylase - - - - - - - - - - - - DUF4124,SLT SRR25158195_k127_2683208_1 391008.Smal_1361 8.011e-132 421.0 COG0723@1|root,COG0723@2|Bacteria,1RAA2@1224|Proteobacteria,1RP9H@1236|Gammaproteobacteria,1X4TD@135614|Xanthomonadales 135614|Xanthomonadales C Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis petA - 1.10.2.2 ko:K00411 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002,ko01000 - - - Rieske,UCR_Fe-S_N SRR25158195_k127_2683208_0 522373.Smlt1605 2.088e-252 781.0 COG1290@1|root,COG1290@2|Bacteria,1MV97@1224|Proteobacteria,1RNCP@1236|Gammaproteobacteria,1X3Q9@135614|Xanthomonadales 135614|Xanthomonadales C Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis petB - - ko:K00412 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002,ko03029 - - - Cytochrom_B_C,Cytochrome_B SRR25158195_k127_2686463_1 391008.Smal_3307 1.121e-212 665.0 COG3808@1|root,COG3808@2|Bacteria,1MUQ3@1224|Proteobacteria,1RN4K@1236|Gammaproteobacteria,1X3IX@135614|Xanthomonadales 135614|Xanthomonadales C Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force hppA - 3.6.1.1 ko:K15987 ko00190,map00190 - - - ko00000,ko00001,ko01000 3.A.10.1 - - H_PPase SRR25158195_k127_2686463_2 391008.Smal_3306 6.089e-94 310.0 2A4E0@1|root,30SZU@2|Bacteria,1PCK5@1224|Proteobacteria,1SXNA@1236|Gammaproteobacteria,1X6FW@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2686463_3 522373.Smlt3888 1.257e-66 239.0 COG3189@1|root,COG3189@2|Bacteria,1RHYB@1224|Proteobacteria,1S9MZ@1236|Gammaproteobacteria,1X6ZP@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function, DUF488 - - - - - - - - - - - - DUF488 SRR25158195_k127_2686463_0 522373.Smlt3887 3.786e-261 806.0 COG0205@1|root,COG0205@2|Bacteria,1MVN3@1224|Proteobacteria,1RMVY@1236|Gammaproteobacteria,1X48X@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions pfp - 2.7.1.11,2.7.1.90 ko:K21071 ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130 - R00756,R00764,R02073,R03236,R04779 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PFK SRR25158195_k127_2693208_4 391008.Smal_2699 3.531e-53 187.0 COG4133@1|root,COG4133@2|Bacteria,1MZPC@1224|Proteobacteria,1S3R2@1236|Gammaproteobacteria,1X4BP@135614|Xanthomonadales 135614|Xanthomonadales O once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system ccmA - 3.6.3.41 ko:K02193 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.107 - - ABC_tran SRR25158195_k127_2693208_2 1429851.X548_11980 2.459e-127 413.0 COG2386@1|root,COG2386@2|Bacteria,1NJB0@1224|Proteobacteria,1RRFJ@1236|Gammaproteobacteria,1X4N7@135614|Xanthomonadales 135614|Xanthomonadales O Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes ccmB - - ko:K02194 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko02000 3.A.1.107 - - CcmB SRR25158195_k127_2693208_1 391008.Smal_2701 6.632e-163 513.0 COG0755@1|root,COG0755@2|Bacteria,1MU61@1224|Proteobacteria,1RP3R@1236|Gammaproteobacteria,1X357@135614|Xanthomonadales 135614|Xanthomonadales O Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes ccmC - - ko:K02195 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko02000 3.A.1.107 - - Cytochrom_C_asm SRR25158195_k127_2693208_3 522373.Smlt3272 3.476e-79 272.0 COG2332@1|root,COG2332@2|Bacteria,1RHN5@1224|Proteobacteria,1S5VA@1236|Gammaproteobacteria,1X6HG@135614|Xanthomonadales 135614|Xanthomonadales O Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH ccmE - - ko:K02197 - - - - ko00000 - - - CcmE SRR25158195_k127_2693208_0 522373.Smlt3273 1.15e-258 799.0 COG1138@1|root,COG1138@2|Bacteria,1MUQS@1224|Proteobacteria,1RMY5@1236|Gammaproteobacteria,1X4P1@135614|Xanthomonadales 135614|Xanthomonadales O Cytochrome C biogenesis ccmF2 - - ko:K02198 - - - - ko00000,ko02000 9.B.14.1 - - CcmF_C,Cytochrom_C_asm SRR25158195_k127_2698548_1 391008.Smal_1935 4.052e-83 278.0 COG2834@1|root,COG2834@2|Bacteria,1PXDV@1224|Proteobacteria,1S9FW@1236|Gammaproteobacteria,1X5BW@135614|Xanthomonadales 135614|Xanthomonadales M Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) lolA - - ko:K03634 - - - - ko00000 - - - LolA SRR25158195_k127_2698548_0 391008.Smal_1934 3.174e-211 657.0 COG1305@1|root,COG1305@2|Bacteria,1R5BE@1224|Proteobacteria,1S56P@1236|Gammaproteobacteria,1XC62@135614|Xanthomonadales 135614|Xanthomonadales E Domain of Unknown Function with PDB structure (DUF3857) - - - - - - - - - - - - DUF3857,Transglut_core SRR25158195_k127_2699337_1 391008.Smal_3957 6.454e-157 498.0 COG0845@1|root,COG0845@2|Bacteria,1MX8W@1224|Proteobacteria,1SBF2@1236|Gammaproteobacteria,1X378@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K15727 - - - - ko00000,ko02000 8.A.1.2.1 - - HlyD_D23 SRR25158195_k127_2699337_0 391008.Smal_3958 0.0 1603.0 COG3696@1|root,COG3696@2|Bacteria,1NUIV@1224|Proteobacteria,1SP6I@1236|Gammaproteobacteria,1X4PT@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K15726 - - - - ko00000,ko02000 2.A.6.1.2 - - ACR_tran SRR25158195_k127_2706257_2 391008.Smal_2400 1.329e-40 151.0 COG0454@1|root,COG0454@2|Bacteria,1N32E@1224|Proteobacteria,1S3QH@1236|Gammaproteobacteria,1X8NH@135614|Xanthomonadales 135614|Xanthomonadales K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_10 SRR25158195_k127_2706257_0 391008.Smal_2401 1.529e-176 559.0 COG2135@1|root,COG2135@2|Bacteria,1NA2X@1224|Proteobacteria,1SWS2@1236|Gammaproteobacteria,1X5CD@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the SOS response-associated peptidase family - - - - - - - - - - - - SRAP SRR25158195_k127_2706257_1 1429851.X548_10765 1.351e-55 196.0 COG0784@1|root,COG0784@2|Bacteria,1PDQX@1224|Proteobacteria,1T6WU@1236|Gammaproteobacteria,1X8BK@135614|Xanthomonadales 135614|Xanthomonadales T Regulator - - - - - - - - - - - - Response_reg SRR25158195_k127_2708757_3 391008.Smal_3709 9.684e-134 426.0 COG1051@1|root,COG1051@2|Bacteria,1QU0T@1224|Proteobacteria,1T1KA@1236|Gammaproteobacteria,1X38R@135614|Xanthomonadales 135614|Xanthomonadales F Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage nudH GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019222,GO:0019439,GO:0034353,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 - ko:K08311 ko03018,map03018 - R10816 RC00002 ko00000,ko00001,ko01000,ko03019 - - - NUDIX SRR25158195_k127_2708757_8 1429851.X548_17285 1.229e-37 143.0 COG2906@1|root,COG2906@2|Bacteria,1PQES@1224|Proteobacteria,1T6UB@1236|Gammaproteobacteria,1X85W@135614|Xanthomonadales 135614|Xanthomonadales P bacterioferritin - - - ko:K02192 - - - - ko00000 - - - Fer2_BFD SRR25158195_k127_2708757_5 522373.Smlt4297 1.03e-95 316.0 COG2193@1|root,COG2193@2|Bacteria,1RCW7@1224|Proteobacteria,1S45S@1236|Gammaproteobacteria,1X5YT@135614|Xanthomonadales 135614|Xanthomonadales P Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex bfr - 1.16.3.1 ko:K03594 ko00860,map00860 - R00078 RC02758 ko00000,ko00001,ko01000 - - - Ferritin SRR25158195_k127_2708757_0 391008.Smal_3706 0.0 1091.0 COG0642@1|root,COG0784@1|root,COG2198@1|root,COG0642@2|Bacteria,COG0784@2|Bacteria,COG2198@2|Bacteria,1NC9X@1224|Proteobacteria,1SVEC@1236|Gammaproteobacteria,1X3ZG@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,Hpt,Response_reg SRR25158195_k127_2708757_1 391008.Smal_3705 0.0 1090.0 COG2199@1|root,COG2200@1|root,COG2200@2|Bacteria,COG3706@2|Bacteria,1R6BM@1224|Proteobacteria,1RRQG@1236|Gammaproteobacteria,1X447@135614|Xanthomonadales 135614|Xanthomonadales T Response regulator receiver - - - - - - - - - - - - EAL,GGDEF,Response_reg SRR25158195_k127_2708757_4 522373.Smlt4294 5.017e-113 368.0 28JRZ@1|root,2Z9HI@2|Bacteria,1R52Z@1224|Proteobacteria,1SYA6@1236|Gammaproteobacteria,1X5JI@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4126) - - - - - - - - - - - - DUF4126 SRR25158195_k127_2708757_2 522373.Smlt4293 6.032e-145 462.0 2DA4I@1|root,32TUN@2|Bacteria,1N0WK@1224|Proteobacteria,1S6HI@1236|Gammaproteobacteria,1X665@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2708757_6 391008.Smal_3702 4.597e-81 273.0 COG1664@1|root,COG1664@2|Bacteria,1PDPX@1224|Proteobacteria,1S9XY@1236|Gammaproteobacteria,1X6WV@135614|Xanthomonadales 135614|Xanthomonadales M cell shape determination - - - - - - - - - - - - Bactofilin SRR25158195_k127_2708757_7 522373.Smlt4291 8.042e-76 257.0 COG0316@1|root,COG0316@2|Bacteria,1RHCW@1224|Proteobacteria,1S675@1236|Gammaproteobacteria,1X6E5@135614|Xanthomonadales 135614|Xanthomonadales C Iron-sulfur cluster insertion protein ErpA erpA GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0019538,GO:0022607,GO:0031163,GO:0043167,GO:0043169,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0071704,GO:0071840,GO:1901564 - ko:K15724 - - - - ko00000 - - - Fe-S_biosyn SRR25158195_k127_2708757_9 1429851.X548_17245 6.967e-37 143.0 COG2816@1|root,COG2816@2|Bacteria,1QGCX@1224|Proteobacteria,1RP0Y@1236|Gammaproteobacteria,1X4JM@135614|Xanthomonadales 135614|Xanthomonadales L nadh pyrophosphatase nudC - 3.6.1.22 ko:K03426 ko00760,ko01100,ko04146,map00760,map01100,map04146 - R00103,R03004,R11104 RC00002 ko00000,ko00001,ko01000 - - - NUDIX,NUDIX-like,zf-NADH-PPase SRR25158195_k127_2725757_3 522373.Smlt2903 1.796e-65 225.0 COG2134@1|root,COG2134@2|Bacteria,1NGNY@1224|Proteobacteria,1RMYU@1236|Gammaproteobacteria,1X7CM@135614|Xanthomonadales 135614|Xanthomonadales I CDP-diacylglycerol pyrophosphatase - - 3.6.1.26 ko:K01521 ko00564,ko01110,map00564,map01110 - R01797 RC00002 ko00000,ko00001,ko01000 - - - CDH SRR25158195_k127_2725757_2 391008.Smal_2354 5.071e-82 278.0 COG1670@1|root,COG1670@2|Bacteria 2|Bacteria J COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - - - - - - - - - - Acetyltransf_3 SRR25158195_k127_2725757_0 1429851.X548_10505 0.0 1714.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1X4HX@135614|Xanthomonadales 135614|Xanthomonadales P TonB-dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_2725757_1 522373.Smlt2899 3.412e-93 306.0 COG3161@1|root,COG3161@2|Bacteria,1RDSK@1224|Proteobacteria,1SS9I@1236|Gammaproteobacteria,1X6R8@135614|Xanthomonadales 135614|Xanthomonadales H chorismate lyase activity - - - - - - - - - - - - - SRR25158195_k127_2725872_3 391008.Smal_0925 3.824e-72 244.0 COG0477@1|root,COG2814@2|Bacteria,1MX1Q@1224|Proteobacteria,1RYQ3@1236|Gammaproteobacteria,1XD69@135614|Xanthomonadales 135614|Xanthomonadales EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_2725872_0 391008.Smal_0924 0.0 1274.0 COG1075@1|root,COG1075@2|Bacteria,1NYAK@1224|Proteobacteria,1RZ8D@1236|Gammaproteobacteria,1X5M2@135614|Xanthomonadales 135614|Xanthomonadales S Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_6 SRR25158195_k127_2725872_1 522373.Smlt1081 1.613e-206 644.0 28HK0@1|root,2Z7V0@2|Bacteria,1MXSJ@1224|Proteobacteria,1RRAP@1236|Gammaproteobacteria,1X3X5@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4105) - - - - - - - - - - - - DUF4105 SRR25158195_k127_2725872_2 391008.Smal_0922 1.323e-78 265.0 COG3791@1|root,COG3791@2|Bacteria,1RHWZ@1224|Proteobacteria,1S4HQ@1236|Gammaproteobacteria,1XCR4@135614|Xanthomonadales 135614|Xanthomonadales S Glutathione-dependent formaldehyde-activating enzyme - - - - - - - - - - - - GFA SRR25158195_k127_2725872_4 1429851.X548_03145 2.312e-09 59.0 COG0500@1|root,COG2226@2|Bacteria,1MXYF@1224|Proteobacteria,1RNWC@1236|Gammaproteobacteria,1X4IH@135614|Xanthomonadales 135614|Xanthomonadales Q Methyltransferase domain - - - ko:K15256 - - - - ko00000,ko01000,ko03016 - - - Methyltransf_25 SRR25158195_k127_2729770_0 358220.C380_15575 3.063e-221 687.0 COG3278@1|root,COG3278@2|Bacteria,1MU18@1224|Proteobacteria,2VIWB@28216|Betaproteobacteria,4AAKI@80864|Comamonadaceae 28216|Betaproteobacteria C Belongs to the heme-copper respiratory oxidase family ccoN - 1.9.3.1 ko:K00404 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - COX1 SRR25158195_k127_2729770_2 1123504.JQKD01000011_gene2383 5.155e-113 367.0 COG2993@1|root,COG2993@2|Bacteria,1MXEY@1224|Proteobacteria,2VIJ2@28216|Betaproteobacteria,4ABQK@80864|Comamonadaceae 28216|Betaproteobacteria C cytochrome c oxidase, cbb3-type, subunit II ccoO - - ko:K00405 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - FixO SRR25158195_k127_2729770_3 614083.AWQR01000005_gene922 4.479e-13 70.0 COG4736@1|root,COG4736@2|Bacteria,1PUF6@1224|Proteobacteria,2VXME@28216|Betaproteobacteria,4AFTD@80864|Comamonadaceae 28216|Betaproteobacteria O PFAM Cbb3-type cytochrome oxidase component ccoQ - - ko:K00407 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - FixQ SRR25158195_k127_2729770_1 232721.Ajs_1087 1.119e-117 384.0 COG2010@1|root,COG2010@2|Bacteria,1MUCW@1224|Proteobacteria,2VHGS@28216|Betaproteobacteria,4A9QA@80864|Comamonadaceae 28216|Betaproteobacteria C C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex ccoP - - ko:K00406 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00156 - - ko00000,ko00001,ko00002 3.D.4.3 - - Cytochrome_CBB3,FixP_N SRR25158195_k127_2730824_2 1429851.X548_08230 3.666e-43 158.0 COG3190@1|root,COG3190@2|Bacteria,1N79Z@1224|Proteobacteria,1SCKP@1236|Gammaproteobacteria,1X7RQ@135614|Xanthomonadales 135614|Xanthomonadales N flagellar fliO - - ko:K02418 ko02040,map02040 - - - ko00000,ko00001,ko02035,ko02044 3.A.6.2 - - FliO SRR25158195_k127_2730824_1 391008.Smal_1870 1.583e-145 464.0 COG1338@1|root,COG1338@2|Bacteria,1MVBU@1224|Proteobacteria,1RMYH@1236|Gammaproteobacteria,1X3XT@135614|Xanthomonadales 135614|Xanthomonadales N Plays a role in the flagellum-specific transport system fliP - - ko:K02419 ko02040,map02040 - - - ko00000,ko00001,ko02035,ko02044 3.A.6.2 - - FliP SRR25158195_k127_2730824_3 522373.Smlt2278 8.671e-43 158.0 COG1987@1|root,COG1987@2|Bacteria,1QB0S@1224|Proteobacteria,1T6HX@1236|Gammaproteobacteria,1X7IY@135614|Xanthomonadales 135614|Xanthomonadales N flagellar fliQ - - ko:K02420 ko02040,map02040 - - - ko00000,ko00001,ko02035,ko02044 3.A.6.2 - - Bac_export_3 SRR25158195_k127_2730824_0 391008.Smal_1868 5.82e-153 485.0 COG1684@1|root,COG1684@2|Bacteria,1NIF4@1224|Proteobacteria,1RMYW@1236|Gammaproteobacteria,1X43C@135614|Xanthomonadales 135614|Xanthomonadales N Role in flagellar biosynthesis fliR - - ko:K02421 ko02040,map02040 - - - ko00000,ko00001,ko02035,ko02044 3.A.6.2 - - Bac_export_1 SRR25158195_k127_2730824_4 1429851.X548_08210 1.496e-32 126.0 COG3300@1|root,COG5001@1|root,COG3300@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X3PH@135614|Xanthomonadales 135614|Xanthomonadales T GGDEF domain - - 2.7.7.65 ko:K21023 ko02025,map02025 - - - ko00000,ko00001,ko01000 - - - EAL,GGDEF,HAMP,MHYT SRR25158195_k127_2734706_0 522373.Smlt2966 1.411e-113 366.0 COG1183@1|root,COG1183@2|Bacteria,1MYK9@1224|Proteobacteria,1SFHY@1236|Gammaproteobacteria,1X50S@135614|Xanthomonadales 135614|Xanthomonadales I Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - 2.7.8.8 ko:K17103 ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110 M00093 R01800 RC00002,RC00017,RC02795 ko00000,ko00001,ko00002,ko01000 - - - CDP-OH_P_transf SRR25158195_k127_2734706_1 391008.Smal_2418 2.178e-104 342.0 COG0500@1|root,COG2226@2|Bacteria,1N2R0@1224|Proteobacteria,1S422@1236|Gammaproteobacteria,1X8DN@135614|Xanthomonadales 135614|Xanthomonadales Q ubiE/COQ5 methyltransferase family - - - - - - - - - - - - Methyltransf_11 SRR25158195_k127_2734706_2 522373.Smlt2970 2.116e-94 312.0 COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,1RRDQ@1236|Gammaproteobacteria,1X3ZH@135614|Xanthomonadales 1236|Gammaproteobacteria V Na -driven multidrug efflux pump - - - - - - - - - - - - MatE SRR25158195_k127_2736074_1 391008.Smal_3200 1.376e-138 444.0 COG0566@1|root,COG0566@2|Bacteria,1MXGV@1224|Proteobacteria,1RNWQ@1236|Gammaproteobacteria,1X4JZ@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family - - - ko:K03214 - - - - ko00000,ko01000,ko03009,ko03016 - - - SpoU_methylase,SpoU_sub_bind SRR25158195_k127_2736074_0 1429851.X548_14675 1.208e-141 458.0 COG4313@1|root,COG4313@2|Bacteria,1N5CH@1224|Proteobacteria,1SFFE@1236|Gammaproteobacteria,1X7C2@135614|Xanthomonadales 135614|Xanthomonadales C Protein involved in meta-pathway of phenol degradation - - - - - - - - - - - - Phenol_MetA_deg SRR25158195_k127_2741621_3 1429851.X548_14655 1.448e-70 239.0 COG0179@1|root,COG0179@2|Bacteria,1MVFA@1224|Proteobacteria,1RN6Y@1236|Gammaproteobacteria,1X54M@135614|Xanthomonadales 135614|Xanthomonadales Q fumarylacetoacetate hydrolase - - 3.7.1.20 ko:K16165 ko00350,ko01100,ko01120,map00350,map01100,map01120 - R01085 RC00326,RC00446 ko00000,ko00001,ko01000 - - - FAA_hydrolase SRR25158195_k127_2741621_2 522373.Smlt3782 2.19e-73 249.0 COG1970@1|root,COG1970@2|Bacteria,1RHG8@1224|Proteobacteria,1S3PD@1236|Gammaproteobacteria,1X701@135614|Xanthomonadales 135614|Xanthomonadales M Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell mscL GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - ko:K03282 - - - - ko00000,ko02000 1.A.22.1 - - MscL SRR25158195_k127_2741621_0 1429851.X548_14665 5.862e-307 942.0 COG2234@1|root,COG2234@2|Bacteria,1NE83@1224|Proteobacteria,1RN9P@1236|Gammaproteobacteria,1X3HG@135614|Xanthomonadales 135614|Xanthomonadales S aminopeptidase - - - - - - - - - - - - Peptidase_M28 SRR25158195_k127_2741621_1 391008.Smal_3198 4.551e-281 867.0 COG1115@1|root,COG1115@2|Bacteria,1MUI3@1224|Proteobacteria,1RMNF@1236|Gammaproteobacteria,1X57M@135614|Xanthomonadales 135614|Xanthomonadales E Sodium alanine symporter - - - ko:K03310 - - - - ko00000 2.A.25 - - Na_Ala_symp SRR25158195_k127_2741621_4 1429851.X548_14675 2.186e-12 66.0 COG4313@1|root,COG4313@2|Bacteria,1N5CH@1224|Proteobacteria,1SFFE@1236|Gammaproteobacteria,1X7C2@135614|Xanthomonadales 135614|Xanthomonadales C Protein involved in meta-pathway of phenol degradation - - - - - - - - - - - - Phenol_MetA_deg SRR25158195_k127_2744980_4 1429851.X548_19235 1.558e-30 121.0 2AQDM@1|root,31FJZ@2|Bacteria,1QD6E@1224|Proteobacteria,1T92Y@1236|Gammaproteobacteria,1XBKU@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2744980_3 522373.Smlt0105 8.788e-159 502.0 COG1451@1|root,COG1451@2|Bacteria,1N6XC@1224|Proteobacteria,1SCR9@1236|Gammaproteobacteria,1X4I2@135614|Xanthomonadales 135614|Xanthomonadales S Metal-dependent hydrolase - - - ko:K07043 - - - - ko00000 - - - DUF45 SRR25158195_k127_2744980_1 391008.Smal_0059 5.784e-191 597.0 COG2974@1|root,COG2974@2|Bacteria,1MXPR@1224|Proteobacteria,1RMNN@1236|Gammaproteobacteria,1X3BZ@135614|Xanthomonadales 135614|Xanthomonadales L May be involved in recombination rdgC - - ko:K03554 - - - - ko00000,ko03400 - - - RdgC SRR25158195_k127_2744980_2 522373.Smlt0103 7.341e-190 595.0 COG0037@1|root,COG0037@2|Bacteria,1MW5Q@1224|Proteobacteria,1RN2H@1236|Gammaproteobacteria,1X416@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system ttcA - - ko:K14058 - - - - ko00000,ko03016 - - - ATP_bind_3 SRR25158195_k127_2744980_5 391008.Smal_0057 1.181e-28 120.0 COG5481@1|root,COG5481@2|Bacteria,1QB94@1224|Proteobacteria,1SHNI@1236|Gammaproteobacteria,1X8UF@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF465) - - - - - - - - - - - - DUF465 SRR25158195_k127_2744980_0 1429851.X548_19465 6.522e-301 923.0 COG2937@1|root,COG2937@2|Bacteria,1MWZ6@1224|Proteobacteria,1RM7K@1236|Gammaproteobacteria,1X4M7@135614|Xanthomonadales 135614|Xanthomonadales I Belongs to the GPAT DAPAT family plsB - 2.3.1.15 ko:K00631 ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110 M00089 R00851,R09380 RC00004,RC00039,RC00041 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyltransferase SRR25158195_k127_2751639_4 522373.Smlt0227 8.788e-40 147.0 COG0477@1|root,COG2814@2|Bacteria,1MWFH@1224|Proteobacteria,1RPAT@1236|Gammaproteobacteria,1X5NI@135614|Xanthomonadales 135614|Xanthomonadales EGP Major facilitator superfamily ynfM - - ko:K08224 - - - - ko00000,ko02000 2.A.1.36 - - MFS_1,Sugar_tr SRR25158195_k127_2751639_3 391008.Smal_0186 1.056e-174 550.0 COG0583@1|root,COG0583@2|Bacteria,1MXRP@1224|Proteobacteria,1RQP1@1236|Gammaproteobacteria,1X5ST@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2751639_1 522373.Smlt0230 5.11e-199 632.0 COG0583@1|root,COG0583@2|Bacteria,1MU8N@1224|Proteobacteria,1RXZ5@1236|Gammaproteobacteria,1X4RH@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator rbcR - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2751639_0 522373.Smlt0231 0.0 1071.0 COG2225@1|root,COG2225@2|Bacteria,1MVEV@1224|Proteobacteria,1RPVI@1236|Gammaproteobacteria,1X3I9@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle aceB - 2.3.3.9 ko:K01638 ko00620,ko00630,ko01100,ko01110,ko01120,ko01200,map00620,map00630,map01100,map01110,map01120,map01200 M00012 R00472 RC00004,RC00308,RC02747 ko00000,ko00001,ko00002,ko01000 - - - Malate_synthase SRR25158195_k127_2751639_2 1429851.X548_20105 1.591e-190 597.0 COG2224@1|root,COG2224@2|Bacteria,1MWIF@1224|Proteobacteria,1RQAK@1236|Gammaproteobacteria,1X3U8@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the reversible formation of glyoxylate and succinate from isocitrate aceA - 4.1.3.1 ko:K01637 ko00630,ko01100,ko01110,ko01120,ko01200,map00630,map01100,map01110,map01120,map01200 M00012 R00479 RC00311,RC00313 ko00000,ko00001,ko00002,ko01000 - - - ICL SRR25158195_k127_275185_2 365046.Rta_31310 5.865e-127 410.0 COG0584@1|root,COG0584@2|Bacteria,1MU8H@1224|Proteobacteria,2VKF6@28216|Betaproteobacteria,4ABPJ@80864|Comamonadaceae 28216|Betaproteobacteria C glycerophosphoryl diester phosphodiesterase ugpQ - 3.1.4.46 ko:K01126 ko00564,map00564 - R01030,R01470 RC00017,RC00425 ko00000,ko00001,ko01000 - - - GDPD SRR25158195_k127_275185_0 365046.Rta_31300 1.219e-183 577.0 COG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2VGZM@28216|Betaproteobacteria,4ABN3@80864|Comamonadaceae 28216|Betaproteobacteria P Belongs to the ABC transporter superfamily ugpC - 3.6.3.20 ko:K05816,ko:K10111,ko:K10112 ko02010,map02010 M00194,M00196,M00197,M00198,M00200,M00201,M00204,M00206,M00207,M00491,M00602,M00605,M00606 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.1,3.A.1.1.3 - - ABC_tran,TOBE_2 SRR25158195_k127_275185_1 338969.Rfer_1285 3.543e-150 478.0 COG0395@1|root,COG0395@2|Bacteria,1MUWS@1224|Proteobacteria,2VICF@28216|Betaproteobacteria,4AAP2@80864|Comamonadaceae 28216|Betaproteobacteria P probably responsible for the translocation of the substrate across the membrane ugpE - - ko:K02026,ko:K05815 ko02010,map02010 M00198,M00207 - - ko00000,ko00001,ko00002,ko02000 3.A.1.1,3.A.1.1.3 - - BPD_transp_1 SRR25158195_k127_275980_0 522373.Smlt1176 0.0 1361.0 COG1082@1|root,COG1082@2|Bacteria,1NNTS@1224|Proteobacteria,1RP3I@1236|Gammaproteobacteria,1X526@135614|Xanthomonadales 135614|Xanthomonadales G alpha-glucosidase - - 3.2.1.20 ko:K01187 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R06087,R06088 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH31 - GH97_C,GH97_N,Glyco_hydro_97 SRR25158195_k127_275980_1 522373.Smlt1175 1.752e-248 769.0 COG1629@1|root,COG4772@1|root,COG1629@2|Bacteria,COG4772@2|Bacteria,1MWTT@1224|Proteobacteria,1RRQ9@1236|Gammaproteobacteria,1X33Z@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor proteins mostly Fe transport - - - - - - - - - - - - OMP_b-brl_3,Plug,TonB_dep_Rec SRR25158195_k127_2771129_2 391008.Smal_2048 7.409e-119 396.0 COG1277@1|root,COG1277@2|Bacteria,1MW7Y@1224|Proteobacteria,1RWQC@1236|Gammaproteobacteria,1XA6J@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF3526) - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,DUF3526 SRR25158195_k127_2771129_0 391008.Smal_2047 0.0 1399.0 COG1629@1|root,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1X5XC@135614|Xanthomonadales 135614|Xanthomonadales P COG1629 Outer membrane receptor proteins, mostly Fe transport - - - - - - - - - - - - Plug,STN,TonB_dep_Rec SRR25158195_k127_2771129_1 391008.Smal_2046 4.645e-286 887.0 COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,1RMUR@1236|Gammaproteobacteria,1XD4V@135614|Xanthomonadales 135614|Xanthomonadales V ABC transporter transmembrane region - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran SRR25158195_k127_2771129_3 522373.Smlt2588 9.915e-114 370.0 COG5640@1|root,COG5640@2|Bacteria,1R5CZ@1224|Proteobacteria,1S0VW@1236|Gammaproteobacteria,1X5QN@135614|Xanthomonadales 135614|Xanthomonadales O Trypsin-like serine protease - - - - - - - - - - - - Trypsin SRR25158195_k127_2775318_0 391008.Smal_2586 0.0 1003.0 COG1196@1|root,COG1196@2|Bacteria,1MUAQ@1224|Proteobacteria,1RNA6@1236|Gammaproteobacteria,1X3YE@135614|Xanthomonadales 135614|Xanthomonadales D Required for chromosome condensation and partitioning smc - - ko:K03529 - - - - ko00000,ko03036 - - - SMC_N,SMC_hinge SRR25158195_k127_2775318_2 522373.Smlt3148 1.63e-80 269.0 COG0359@1|root,COG0359@2|Bacteria,1RD0R@1224|Proteobacteria,1S3WS@1236|Gammaproteobacteria,1X6DH@135614|Xanthomonadales 135614|Xanthomonadales J binds to the 23S rRNA rplI GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02939 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L9_C,Ribosomal_L9_N SRR25158195_k127_2775318_5 522373.Smlt3149 4.975e-42 155.0 COG0238@1|root,COG0238@2|Bacteria,1MZ8U@1224|Proteobacteria,1S8R8@1236|Gammaproteobacteria,1X7FA@135614|Xanthomonadales 135614|Xanthomonadales J Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit rpsR GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02963 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S18 SRR25158195_k127_2775318_3 391008.Smal_2589 6.259e-79 268.0 COG0360@1|root,COG0360@2|Bacteria,1RH82@1224|Proteobacteria,1S5VU@1236|Gammaproteobacteria,1X61R@135614|Xanthomonadales 135614|Xanthomonadales J Binds together with S18 to 16S ribosomal RNA rpsF GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - ko:K02990 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011,ko03029 - - - Ribosomal_S6 SRR25158195_k127_2775318_4 522373.Smlt3153 2.123e-66 228.0 COG0316@1|root,COG0316@2|Bacteria,1RH6T@1224|Proteobacteria,1S5XD@1236|Gammaproteobacteria,1X78H@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the HesB IscA family iscA - - ko:K13628 - - - - ko00000,ko03016 - - - Fe-S_biosyn SRR25158195_k127_2775318_1 522373.Smlt3154 8.728e-307 941.0 COG0017@1|root,COG0017@2|Bacteria,1MWFV@1224|Proteobacteria,1RMU4@1236|Gammaproteobacteria,1X3ZM@135614|Xanthomonadales 135614|Xanthomonadales J asparaginyl-tRNA synthetase asnS GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.22 ko:K01893 ko00970,map00970 M00359,M00360 R03648 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon SRR25158195_k127_2779536_1 1429851.X548_10375 5.706e-162 514.0 COG4965@1|root,COG4965@2|Bacteria,1MUXK@1224|Proteobacteria,1S7U3@1236|Gammaproteobacteria,1X43F@135614|Xanthomonadales 135614|Xanthomonadales U type II secretion - - - ko:K12510 - - - - ko00000,ko02044 - - - T2SSF SRR25158195_k127_2779536_0 391008.Smal_2325 1.901e-165 525.0 COG2064@1|root,COG2064@2|Bacteria,1RBXN@1224|Proteobacteria,1SZX1@1236|Gammaproteobacteria,1X5WZ@135614|Xanthomonadales 135614|Xanthomonadales NU type II secretion - - - ko:K12511 - - - - ko00000,ko02044 - - - T2SSF SRR25158195_k127_2779536_2 391008.Smal_2326 1.076e-38 150.0 COG0457@1|root,COG0457@2|Bacteria,1QWRB@1224|Proteobacteria,1T2X9@1236|Gammaproteobacteria,1XC45@135614|Xanthomonadales 135614|Xanthomonadales S Tetratricopeptide repeat - - - - - - - - - - - - - SRR25158195_k127_2781850_0 391008.Smal_1769 0.0 1962.0 COG1629@1|root,COG1629@2|Bacteria,1QU0Y@1224|Proteobacteria,1T1KC@1236|Gammaproteobacteria,1X4MY@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_2781850_1 439375.Oant_3240 0.0 1139.0 COG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,1J3RE@118882|Brucellaceae 28211|Alphaproteobacteria P haloacid dehalogenase-like hydrolase - - 3.6.3.54 ko:K17686,ko:K19597 ko01524,ko04016,map01524,map04016 - R00086 RC00002 ko00000,ko00001,ko01000 3.A.3.5,3.A.3.5.20 - - E1-E2_ATPase,HMA,Hydrolase SRR25158195_k127_2781850_3 1429851.X548_07730 1.388e-75 258.0 COG0789@1|root,COG0789@2|Bacteria,1RGX6@1224|Proteobacteria,1S8ZG@1236|Gammaproteobacteria,1X6F8@135614|Xanthomonadales 135614|Xanthomonadales K MerR, DNA binding - - - ko:K19592 - M00768 - - ko00000,ko00002,ko03000 - - - MerR,MerR-DNA-bind SRR25158195_k127_2781850_4 522373.Smlt2178 2.396e-26 112.0 COG2608@1|root,COG2608@2|Bacteria,1NGBD@1224|Proteobacteria,1SEXD@1236|Gammaproteobacteria,1X90W@135614|Xanthomonadales 135614|Xanthomonadales P Heavy-metal-associated domain - - - ko:K07213 ko04978,map04978 - - - ko00000,ko00001 - - - HMA SRR25158195_k127_2781850_2 522373.Smlt2179 0.0 1033.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MV8W@1224|Proteobacteria,1RMQA@1236|Gammaproteobacteria,1X4VK@135614|Xanthomonadales 135614|Xanthomonadales P TonB-dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_2786011_2 522373.Smlt2234 0.0 1000.0 COG0642@1|root,COG0784@1|root,COG2198@1|root,COG0784@2|Bacteria,COG2198@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1X3RD@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase rpfC - 2.7.13.3 ko:K10715 ko02020,ko02024,map02020,map02024 M00517 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA,Hpt,Response_reg SRR25158195_k127_2786011_3 522373.Smlt2235 4.311e-177 561.0 COG1024@1|root,COG1024@2|Bacteria,1MUD7@1224|Proteobacteria,1RSI6@1236|Gammaproteobacteria,1X4GM@135614|Xanthomonadales 135614|Xanthomonadales I enoyl-CoA hydratase rpfF - - ko:K13816 ko02020,ko02024,map02020,map02024 - - - ko00000,ko00001 - - - ECH_1 SRR25158195_k127_2786011_1 391008.Smal_1831 0.0 1108.0 COG0318@1|root,COG0318@2|Bacteria,1MU6G@1224|Proteobacteria,1RMQ4@1236|Gammaproteobacteria,1X3W8@135614|Xanthomonadales 135614|Xanthomonadales IQ Activates fatty acids by binding to coenzyme A rpfB - 6.2.1.3 ko:K01897 ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920 M00086 R01280 RC00004,RC00014 ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 4.C.1.1 - - AMP-binding,AMP-binding_C SRR25158195_k127_2786011_0 391008.Smal_1832 0.0 1161.0 COG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,1RMD2@1236|Gammaproteobacteria,1X3AK@135614|Xanthomonadales 135614|Xanthomonadales E Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate betA - 1.1.99.1 ko:K00108 ko00260,ko01100,map00260,map01100 M00555 R01025 RC00087 ko00000,ko00001,ko00002,ko01000 - - - GMC_oxred_C,GMC_oxred_N SRR25158195_k127_2786011_4 391008.Smal_1833 9.559e-103 334.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X3DG@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the aldehyde dehydrogenase family betB GO:0003674,GO:0003824,GO:0004029,GO:0008150,GO:0008152,GO:0008802,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.32,1.2.1.60,1.2.1.8,1.2.1.85 ko:K00130,ko:K00151,ko:K10217 ko00260,ko00350,ko00362,ko00380,ko00622,ko01100,ko01120,ko01220,map00260,map00350,map00362,map00380,map00622,map01100,map01120,map01220 M00038,M00533,M00555,M00569 R02565,R02566,R02762,R03889,R04418,R05353 RC00080,RC00218,RC00254 ko00000,ko00001,ko00002,ko01000 - - - Aldedh SRR25158195_k127_2791801_1 629773.AORY01000015_gene1197 2.053e-31 128.0 COG3525@1|root,COG3525@2|Bacteria,1MVDE@1224|Proteobacteria,2TSK6@28211|Alphaproteobacteria,2K1S6@204457|Sphingomonadales 204457|Sphingomonadales G Glycosyl hydrolase family 20, catalytic domain - - 3.2.1.52 ko:K12373 ko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142 M00079 R00022,R06004,R11316 RC00049 ko00000,ko00001,ko00002,ko01000,ko03110 - GH20 - CHB_HEX_C_1,Fn3_assoc,Glyco_hydro_20,Glyco_hydro_20b SRR25158195_k127_2791801_0 1292034.OR37_03050 1.592e-68 253.0 COG1080@1|root,COG2190@1|root,COG1080@2|Bacteria,COG2190@2|Bacteria,1MUT8@1224|Proteobacteria,2TR28@28211|Alphaproteobacteria,2KIAS@204458|Caulobacterales 204458|Caulobacterales G PTS system, glucose subfamily, IIA - - - ko:K11189 - - - - ko00000,ko02000 4.A.2.1 - - PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C,PTS-HPr,PTS_EIIA_1 SRR25158195_k127_2793550_0 522373.Smlt3813 0.0 1104.0 COG0021@1|root,COG0021@2|Bacteria,1MUEY@1224|Proteobacteria,1RMWP@1236|Gammaproteobacteria,1X498@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate tktA - 2.2.1.1 ko:K00615 ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007,M00165,M00167 R01067,R01641,R01830,R06590 RC00032,RC00226,RC00571,RC01560 ko00000,ko00001,ko00002,ko01000 - - - Transket_pyr,Transketolase_C,Transketolase_N SRR25158195_k127_2793550_2 391008.Smal_3229 9.405e-264 815.0 COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,1RMEN@1236|Gammaproteobacteria,1X37F@135614|Xanthomonadales 135614|Xanthomonadales U Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family gltP - - ko:K03309 - - - - ko00000 2.A.23 - - SDF SRR25158195_k127_2793550_3 1429851.X548_14825 8.384e-240 753.0 COG0457@1|root,COG0457@2|Bacteria,1MXK4@1224|Proteobacteria,1RNFM@1236|Gammaproteobacteria,1X3AP@135614|Xanthomonadales 135614|Xanthomonadales S Oxygen tolerance - - - - - - - - - - - - BatD SRR25158195_k127_2793550_1 391008.Smal_3231 7.839e-287 891.0 COG0457@1|root,COG2304@1|root,COG0457@2|Bacteria,COG2304@2|Bacteria,1MW51@1224|Proteobacteria,1RMD3@1236|Gammaproteobacteria,1X36E@135614|Xanthomonadales 135614|Xanthomonadales S von willebrand factor, type A - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - TPR_1,TPR_16,TPR_2,VWA_2 SRR25158195_k127_2793550_4 522373.Smlt3817 1.197e-194 612.0 COG2304@1|root,COG2304@2|Bacteria,1MXQ7@1224|Proteobacteria,1RMDX@1236|Gammaproteobacteria,1X2YK@135614|Xanthomonadales 135614|Xanthomonadales S von willebrand factor, type a - - - ko:K07114 - - - - ko00000,ko02000 1.A.13.2.2,1.A.13.2.3 - - VWA SRR25158195_k127_2793550_6 1429851.X548_14845 1.478e-34 132.0 COG1721@1|root,COG1721@2|Bacteria,1Q7RR@1224|Proteobacteria,1RNNP@1236|Gammaproteobacteria,1X3IY@135614|Xanthomonadales 135614|Xanthomonadales S conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - - - - - - - - - - DUF58 SRR25158195_k127_2806028_1 1429851.X548_05750 2.865e-129 414.0 COG0811@1|root,COG0811@2|Bacteria,1QNJ1@1224|Proteobacteria,1RQWT@1236|Gammaproteobacteria,1X3F3@135614|Xanthomonadales 135614|Xanthomonadales U Biopolymer exbB2 - - ko:K03561 - - - - ko00000,ko02000 1.A.30.2.1 - - MotA_ExbB SRR25158195_k127_2806028_2 1429851.X548_05755 5.075e-79 264.0 COG0848@1|root,COG0848@2|Bacteria,1N0ZA@1224|Proteobacteria,1S90K@1236|Gammaproteobacteria,1X6SD@135614|Xanthomonadales 135614|Xanthomonadales U Biopolymer exbD4 - - ko:K03559 - - - - ko00000,ko02000 1.A.30.2.1 - - ExbD SRR25158195_k127_2806028_0 1429851.X548_05760 0.0 1048.0 COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,1RMUR@1236|Gammaproteobacteria,1X3I4@135614|Xanthomonadales 135614|Xanthomonadales V Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation msbA GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0071702 - ko:K11085 ko02010,map02010 - - - ko00000,ko00001,ko01000,ko02000 3.A.1.106 - - ABC_membrane,ABC_tran SRR25158195_k127_2811959_1 391008.Smal_3311 1.198e-74 254.0 COG2832@1|root,COG2832@2|Bacteria,1N7BI@1224|Proteobacteria,1SCJZ@1236|Gammaproteobacteria,1X92C@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF454) - - - ko:K09790 - - - - ko00000 - - - DUF454 SRR25158195_k127_2811959_0 391008.Smal_3312 6.888e-103 337.0 COG3230@1|root,COG3230@2|Bacteria,1RFYK@1224|Proteobacteria,1S7X0@1236|Gammaproteobacteria,1X94W@135614|Xanthomonadales 135614|Xanthomonadales P Heme oxygenase - - 1.14.99.58 ko:K07215 ko00860,map00860 - - - ko00000,ko00001,ko01000 - - - Heme_oxygenase SRR25158195_k127_2813242_2 1118235.CAJH01000061_gene3413 1.688e-157 498.0 COG4948@1|root,COG4948@2|Bacteria,1MU8R@1224|Proteobacteria,1RNM4@1236|Gammaproteobacteria,1X35B@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the mandelate racemase muconate lactonizing enzyme family - - 5.1.1.20 ko:K19802 - - R10938 RC03309 ko00000,ko01000 - - - MR_MLE_C,MR_MLE_N SRR25158195_k127_2813242_3 1118235.CAJH01000061_gene3414 4.313e-156 496.0 COG1737@1|root,COG1737@2|Bacteria,1ND5W@1224|Proteobacteria,1RNCI@1236|Gammaproteobacteria,1X4CE@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_6,SIS SRR25158195_k127_2813242_4 1118235.CAJH01000061_gene3415 8.611e-97 323.0 COG3786@1|root,COG3786@2|Bacteria,1RH22@1224|Proteobacteria,1S2SR@1236|Gammaproteobacteria,1X5KP@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - YkuD SRR25158195_k127_2813242_0 522373.Smlt0454 1.678e-255 800.0 COG0531@1|root,COG0531@2|Bacteria,1MUA2@1224|Proteobacteria,1RQ1P@1236|Gammaproteobacteria,1X5A0@135614|Xanthomonadales 135614|Xanthomonadales E amino acid - - - - - - - - - - - - AA_permease_2 SRR25158195_k127_2813242_7 391008.Smal_0335 2.857e-54 192.0 2DSAF@1|root,33F8J@2|Bacteria,1QU2R@1224|Proteobacteria,1T1NG@1236|Gammaproteobacteria,1X8JE@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2813242_5 391008.Smal_0334 8.161e-72 250.0 COG4682@1|root,COG4682@2|Bacteria,1RH8F@1224|Proteobacteria,1S6WM@1236|Gammaproteobacteria,1X7AU@135614|Xanthomonadales 135614|Xanthomonadales S yiaA/B two helix domain yiaA - - - - - - - - - - - YiaAB SRR25158195_k127_2813242_1 522373.Smlt0451 5.997e-237 739.0 COG2133@1|root,COG2133@2|Bacteria,1MV2E@1224|Proteobacteria,1RNGN@1236|Gammaproteobacteria,1X362@135614|Xanthomonadales 135614|Xanthomonadales G Dehydrogenase yliI - - - - - - - - - - - GSDH SRR25158195_k127_2813242_6 391008.Smal_0332 1.431e-68 238.0 2DQJ5@1|root,3376Z@2|Bacteria,1QZPW@1224|Proteobacteria,1SU5N@1236|Gammaproteobacteria,1XBMZ@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_282244_0 522373.Smlt3552 8.45e-322 985.0 COG0481@1|root,COG0481@2|Bacteria,1MVZA@1224|Proteobacteria,1RPFB@1236|Gammaproteobacteria,1X3UI@135614|Xanthomonadales 135614|Xanthomonadales M Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner lepA - - ko:K03596 ko05134,map05134 - - - ko00000,ko00001 - - - EFG_C,GTP_EFTU,GTP_EFTU_D2,LepA_C SRR25158195_k127_282244_1 1429851.X548_13520 7.671e-45 163.0 COG0681@1|root,COG0681@2|Bacteria,1MXUF@1224|Proteobacteria,1RMHI@1236|Gammaproteobacteria,1X3NH@135614|Xanthomonadales 135614|Xanthomonadales U Belongs to the peptidase S26 family lepB - 3.4.21.89 ko:K03100 ko02024,ko03060,map02024,map03060 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S24,Peptidase_S26 SRR25158195_k127_2824290_2 522373.Smlt3886 3.528e-61 213.0 COG0563@1|root,COG0563@2|Bacteria,1MXCZ@1224|Proteobacteria,1RMT6@1236|Gammaproteobacteria,1X668@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism adk - 2.7.4.3 ko:K00939 ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130 M00049 R00127,R01547,R11319 RC00002 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ADK SRR25158195_k127_2824290_0 1429851.X548_15145 5.459e-279 863.0 COG0773@1|root,COG0773@2|Bacteria,1MUC5@1224|Proteobacteria,1RMMT@1236|Gammaproteobacteria,1X4Y7@135614|Xanthomonadales 135614|Xanthomonadales M Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate mpl - 6.3.2.45 ko:K02558 - - - - ko00000,ko01000 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M SRR25158195_k127_2824290_1 522373.Smlt3884 3.855e-119 384.0 COG2802@1|root,COG2802@2|Bacteria,1NV9N@1224|Proteobacteria,1T15C@1236|Gammaproteobacteria,1XD33@135614|Xanthomonadales 135614|Xanthomonadales S to the N-terminal domain of Lon protease - - - ko:K07157 - - - - ko00000 - - - LON_substr_bdg SRR25158195_k127_2828623_2 522373.Smlt0262 2.224e-277 854.0 COG1752@1|root,COG1752@2|Bacteria,1N9HS@1224|Proteobacteria,1SJQK@1236|Gammaproteobacteria,1X9SY@135614|Xanthomonadales 135614|Xanthomonadales S Patatin-like phospholipase - - - - - - - - - - - - Patatin SRR25158195_k127_2828623_1 522373.Smlt0263 3.03e-294 904.0 COG3093@1|root,COG3800@1|root,COG3093@2|Bacteria,COG3800@2|Bacteria,1MU50@1224|Proteobacteria,1RZSC@1236|Gammaproteobacteria,1X4V1@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - ko:K21686 - - - - ko00000,ko03000 - - - DUF2083,HTH_3,HTH_31,Peptidase_M78 SRR25158195_k127_2828623_0 1429851.X548_20275 7.5e-322 986.0 COG1012@1|root,COG1012@2|Bacteria,1MUHV@1224|Proteobacteria,1RNFN@1236|Gammaproteobacteria,1X3XX@135614|Xanthomonadales 135614|Xanthomonadales C Methylmalonate-semialdehyde dehydrogenase mmsA - 1.2.1.18,1.2.1.27 ko:K00140 ko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200 M00013 R00705,R00706,R00922,R00935 RC00004,RC02723,RC02817 ko00000,ko00001,ko00002,ko01000 - - - Aldedh SRR25158195_k127_2828623_3 522373.Smlt0265 2.297e-185 582.0 COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,1RMMJ@1236|Gammaproteobacteria,1X56A@135614|Xanthomonadales 135614|Xanthomonadales I Acyl-CoA dehydrogenase - - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N SRR25158195_k127_2848110_1 1219375.CM002139_gene226 5.462e-37 139.0 2F131@1|root,33U4I@2|Bacteria,1NV86@1224|Proteobacteria,1SND3@1236|Gammaproteobacteria,1XB9G@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2848110_3 1396858.Q666_04970 0.000144 54.0 2E6D1@1|root,3310P@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - SRR25158195_k127_2848110_0 59538.XP_005976091.1 1.906e-155 511.0 COG1132@1|root,KOG0058@2759|Eukaryota,38F7P@33154|Opisthokonta,3BCBZ@33208|Metazoa,3CREB@33213|Bilateria,489V8@7711|Chordata,4942Z@7742|Vertebrata,3JFYG@40674|Mammalia,4J2ND@91561|Cetartiodactyla 33208|Metazoa U ATP-binding cassette sub-family B - - - - - - - - - - - - ABC_membrane,ABC_tran,Peptidase_C39 SRR25158195_k127_2856268_0 391008.Smal_0362 6.194e-134 431.0 2ER58@1|root,33IQU@2|Bacteria,1NGJU@1224|Proteobacteria,1SRW0@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2856268_1 391008.Smal_0360 6.015e-61 218.0 2A8V4@1|root,30XYD@2|Bacteria,1QB91@1224|Proteobacteria,1T6TB@1236|Gammaproteobacteria,1X842@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2856268_2 1429851.X548_00315 7.405e-52 183.0 COG2353@1|root,COG2353@2|Bacteria,1R9XD@1224|Proteobacteria,1S24R@1236|Gammaproteobacteria,1XCKR@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0312 family - - - - - - - - - - - - YceI SRR25158195_k127_2864694_4 391008.Smal_3370 2.502e-188 589.0 COG0278@1|root,COG0316@1|root,COG0607@1|root,COG0278@2|Bacteria,COG0316@2|Bacteria,COG0607@2|Bacteria,1MZ4V@1224|Proteobacteria,1S640@1236|Gammaproteobacteria,1X4PV@135614|Xanthomonadales 135614|Xanthomonadales OP Glutaredoxin - - - ko:K07390 - - - - ko00000,ko03029,ko03110 - - - Glutaredoxin,Rhodanese SRR25158195_k127_2864694_7 391008.Smal_3371 6.607e-116 373.0 COG3803@1|root,COG3803@2|Bacteria,1RHYI@1224|Proteobacteria,1SC49@1236|Gammaproteobacteria,1X6K1@135614|Xanthomonadales 135614|Xanthomonadales S Bacterial protein of unknown function (DUF924) - - - - - - - - - - - - DUF924 SRR25158195_k127_2864694_6 391008.Smal_3372 1.955e-166 526.0 COG2820@1|root,COG2820@2|Bacteria,1QVR4@1224|Proteobacteria,1T2HJ@1236|Gammaproteobacteria,1X3C6@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile - - 3.2.2.4 ko:K01241 ko00230,map00230 - R00182 RC00063,RC00318 ko00000,ko00001,ko01000 - - - PNP_UDP_1 SRR25158195_k127_2864694_0 522373.Smlt3964 3.544e-288 888.0 COG1228@1|root,COG1228@2|Bacteria,1MXXR@1224|Proteobacteria,1RRK7@1236|Gammaproteobacteria,1X4CC@135614|Xanthomonadales 135614|Xanthomonadales Q amidohydrolase - - - - - - - - - - - - Amidohydro_1,Amidohydro_3 SRR25158195_k127_2864694_2 522373.Smlt3965 1.73e-235 736.0 COG1228@1|root,COG1228@2|Bacteria,1MXQX@1224|Proteobacteria,1RQGS@1236|Gammaproteobacteria,1X35X@135614|Xanthomonadales 135614|Xanthomonadales Q Amidohydrolase family - - - - - - - - - - - - Amidohydro_1,Amidohydro_3 SRR25158195_k127_2864694_8 391008.Smal_3375 7.383e-111 366.0 COG3917@1|root,COG3917@2|Bacteria,1MWB9@1224|Proteobacteria,1S4K8@1236|Gammaproteobacteria,1XBXZ@135614|Xanthomonadales 135614|Xanthomonadales Q DSBA-like thioredoxin domain - - - - - - - - - - - - DSBA SRR25158195_k127_2864694_3 391008.Smal_3376 7.12e-198 618.0 COG1307@1|root,COG1307@2|Bacteria,1R5M9@1224|Proteobacteria,1RZYN@1236|Gammaproteobacteria,1XCQP@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterised protein, DegV family COG1307 - - - - - - - - - - - - DegV SRR25158195_k127_2864694_9 522373.Smlt3968 1.381e-66 230.0 29ZXI@1|root,30MZ2@2|Bacteria,1QB6F@1224|Proteobacteria,1T6Q8@1236|Gammaproteobacteria,1X7WN@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2864694_5 743721.Psesu_2589 2.244e-171 550.0 COG1073@1|root,COG1073@2|Bacteria,1R34U@1224|Proteobacteria,1SYR4@1236|Gammaproteobacteria,1X4S6@135614|Xanthomonadales 135614|Xanthomonadales S alpha beta - - - ko:K06889 - - - - ko00000 - - - - SRR25158195_k127_2864694_1 1429851.X548_15570 4.378e-237 739.0 COG2199@1|root,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,1S0C5@1236|Gammaproteobacteria,1X68S@135614|Xanthomonadales 135614|Xanthomonadales T diguanylate cyclase - - - - - - - - - - - - GGDEF SRR25158195_k127_2867415_2 1429851.X548_14785 3.912e-69 235.0 2AP7Y@1|root,31E9T@2|Bacteria,1QBJG@1224|Proteobacteria,1T753@1236|Gammaproteobacteria,1X8SR@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2867415_1 522373.Smlt3807 2.733e-156 496.0 COG0491@1|root,COG0491@2|Bacteria,1MURA@1224|Proteobacteria,1RN27@1236|Gammaproteobacteria,1X3E4@135614|Xanthomonadales 135614|Xanthomonadales S Zn-dependent hydrolases including glyoxylases - - - - - - - - - - - - Lactamase_B SRR25158195_k127_2867415_0 1429851.X548_14775 1.701e-164 518.0 28JIP@1|root,2Z82C@2|Bacteria,1N94V@1224|Proteobacteria,1SCA4@1236|Gammaproteobacteria,1XCG7@135614|Xanthomonadales 135614|Xanthomonadales M S1/P1 Nuclease - - - - - - - - - - - - S1-P1_nuclease SRR25158195_k127_2867415_3 1223521.BBJX01000004_gene2538 9.267e-46 175.0 COG2199@1|root,COG3706@2|Bacteria,1RDWG@1224|Proteobacteria,2WF41@28216|Betaproteobacteria,4AI37@80864|Comamonadaceae 28216|Betaproteobacteria T Diguanylate cyclase, GGDEF domain - - - - - - - - - - - - GGDEF SRR25158195_k127_2871718_1 522373.Smlt0851 2.128e-169 533.0 COG3170@1|root,COG3170@2|Bacteria,1QV1N@1224|Proteobacteria,1T49N@1236|Gammaproteobacteria,1XD92@135614|Xanthomonadales 135614|Xanthomonadales NU Protein of unknown function (DUF1631) - - - - - - - - - - - - DUF1631 SRR25158195_k127_2871718_0 522373.Smlt0852 1.221e-207 649.0 COG3288@1|root,COG3288@2|Bacteria,1MVXU@1224|Proteobacteria,1RN23@1236|Gammaproteobacteria,1X34W@135614|Xanthomonadales 135614|Xanthomonadales C NADP transhydrogenase - - 1.6.1.2 ko:K00324 ko00760,ko01100,map00760,map01100 - R00112 RC00001 ko00000,ko00001,ko01000 - - - AlaDh_PNT_C,AlaDh_PNT_N SRR25158195_k127_2871718_3 391008.Smal_0701 1.884e-70 240.0 2DNXA@1|root,32ZMW@2|Bacteria,1NBF6@1224|Proteobacteria,1SDGN@1236|Gammaproteobacteria,1X7TE@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3106) - - - - - - - - - - - - DUF3106 SRR25158195_k127_2871718_2 391008.Smal_0703 4.437e-99 324.0 COG1595@1|root,COG1595@2|Bacteria,1R9WC@1224|Proteobacteria,1SA30@1236|Gammaproteobacteria,1X695@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily rpoE1 - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_2872832_0 1429851.X548_01475 1.063e-165 529.0 COG3468@1|root,COG3468@2|Bacteria,1R8WV@1224|Proteobacteria,1RPXJ@1236|Gammaproteobacteria 1236|Gammaproteobacteria MU outer membrane autotransporter barrel domain protein - - - - - - - - - - - - Autotransporter,Pertactin SRR25158195_k127_2875978_2 522373.Smlt4186 1.005e-99 349.0 2BQEH@1|root,32J9V@2|Bacteria,1PCTF@1224|Proteobacteria,1SXXJ@1236|Gammaproteobacteria,1X6YY@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - DUF4124 SRR25158195_k127_2875978_1 391008.Smal_3592 4.234e-116 376.0 COG0009@1|root,COG0009@2|Bacteria,1MVPM@1224|Proteobacteria,1S610@1236|Gammaproteobacteria,1X6GG@135614|Xanthomonadales 135614|Xanthomonadales J Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-) CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate tsaC GO:0000049,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 2.7.7.87 ko:K07566 - - R10463 RC00745 ko00000,ko01000,ko03009,ko03016 - - - Sua5_yciO_yrdC SRR25158195_k127_2875978_0 522373.Smlt4184 0.0 1365.0 COG0550@1|root,COG1754@1|root,COG0550@2|Bacteria,COG1754@2|Bacteria,1MUFZ@1224|Proteobacteria,1RNZ2@1236|Gammaproteobacteria,1X3EQ@135614|Xanthomonadales 135614|Xanthomonadales L Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone topA - 5.99.1.2 ko:K03168 - - - - ko00000,ko01000,ko03032,ko03400 - - - Topoisom_bac,Toprim,Toprim_C_rpt SRR25158195_k127_2877035_0 530564.Psta_0600 7.162e-118 394.0 COG0515@1|root,COG4191@1|root,COG0515@2|Bacteria,COG4191@2|Bacteria,2IYM4@203682|Planctomycetes 203682|Planctomycetes KLT Serine threonine protein kinase - - 2.7.11.1 ko:K12132 - - - - ko00000,ko01000,ko01001 - - - Pkinase SRR25158195_k127_2877035_1 1254432.SCE1572_32055 6.435e-73 254.0 COG2010@1|root,COG2010@2|Bacteria,1QX4J@1224|Proteobacteria,43CNY@68525|delta/epsilon subdivisions,2X7W8@28221|Deltaproteobacteria,2YX21@29|Myxococcales 28221|Deltaproteobacteria C Cytochrome c - - - - - - - - - - - - Cu2_monoox_C,Cu2_monooxygen SRR25158195_k127_288256_1 287.DR97_5973 1.291e-252 783.0 COG2911@1|root,COG3209@1|root,COG2911@2|Bacteria,COG3209@2|Bacteria,1P8N9@1224|Proteobacteria,1T1IH@1236|Gammaproteobacteria 1236|Gammaproteobacteria D PFAM FecR protein - - - ko:K20276 ko02024,map02024 - - - ko00000,ko00001 - - - Big_3_2,Big_3_3 SRR25158195_k127_288256_2 287.DR97_5972 3.405e-136 453.0 COG1538@1|root,COG1538@2|Bacteria,1MYX2@1224|Proteobacteria,1RX7W@1236|Gammaproteobacteria,1YKMS@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria MU Outer membrane efflux protein - - - ko:K12543 - M00330 - - ko00000,ko00002,ko02000,ko02044 1.B.17,3.A.1.109.4 - - OEP SRR25158195_k127_288256_0 287.DR97_5971 1.387e-270 852.0 COG2274@1|root,COG2274@2|Bacteria,1R2T0@1224|Proteobacteria,1SBE1@1236|Gammaproteobacteria,1YD54@136841|Pseudomonas aeruginosa group 1236|Gammaproteobacteria V ABC transporter transmembrane region cyaB - - ko:K12541,ko:K12542 ko02010,map02010 M00330 - - ko00000,ko00001,ko00002,ko02000,ko02044 3.A.1.109.3,3.A.1.109.4,8.A.1 - - ABC_membrane,ABC_tran SRR25158195_k127_2886391_1 1429851.X548_16350 8.895e-207 648.0 COG0840@1|root,COG5000@1|root,COG0840@2|Bacteria,COG5000@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X3KX@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - HAMP,MCPsignal,dCache_1 SRR25158195_k127_2886391_4 522373.Smlt4137 5.725e-68 233.0 2AMA3@1|root,31C50@2|Bacteria,1RK5D@1224|Proteobacteria,1S717@1236|Gammaproteobacteria,1X8I0@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2628) - - - - - - - - - - - - DUF2628 SRR25158195_k127_2886391_0 522373.Smlt4133 0.0 1233.0 COG2943@1|root,COG2943@2|Bacteria,1MVXZ@1224|Proteobacteria,1RMGX@1236|Gammaproteobacteria,1X328@135614|Xanthomonadales 135614|Xanthomonadales M Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) opgH GO:0005575,GO:0016020 - ko:K03669 - - - - ko00000,ko01000,ko01003,ko02000 4.D.3.1.1 GT2 - Glyco_trans_2_3,Glyco_transf_21,Glycos_transf_2 SRR25158195_k127_2886391_3 522373.Smlt4132 2.605e-128 411.0 COG0400@1|root,COG0400@2|Bacteria,1RA02@1224|Proteobacteria,1S24F@1236|Gammaproteobacteria,1X4YF@135614|Xanthomonadales 135614|Xanthomonadales S Carboxylesterase - - - ko:K06999 - - - - ko00000 - - - Abhydrolase_2 SRR25158195_k127_2886391_2 522373.Smlt4131 3.735e-199 623.0 COG2972@1|root,COG2972@2|Bacteria,1MXVQ@1224|Proteobacteria,1RQDA@1236|Gammaproteobacteria,1X40R@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase algZ - 2.7.13.3 ko:K08082 ko02020,map02020 M00493 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - His_kinase SRR25158195_k127_2886391_5 1429851.X548_16315 7.006e-53 187.0 COG3279@1|root,COG3279@2|Bacteria,1MUE8@1224|Proteobacteria,1RMJJ@1236|Gammaproteobacteria,1X3HP@135614|Xanthomonadales 135614|Xanthomonadales KT Response regulator of the LytR AlgR family - - - ko:K08083 ko02020,map02020 M00493 - - ko00000,ko00001,ko00002,ko02022 - - - LytTR,Response_reg SRR25158195_k127_2890120_3 863365.XHC_2533 8.489e-126 409.0 COG1386@1|root,COG1386@2|Bacteria,1PUA6@1224|Proteobacteria,1RNXE@1236|Gammaproteobacteria,1X30A@135614|Xanthomonadales 135614|Xanthomonadales D Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves - - - ko:K06024 - - - - ko00000,ko03036 - - - SMC_ScpB SRR25158195_k127_2890120_0 391008.Smal_2691 1.134e-302 934.0 COG1187@1|root,COG1187@2|Bacteria,1MUCE@1224|Proteobacteria,1RQU0@1236|Gammaproteobacteria,1X2YH@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the pseudouridine synthase RsuA family rluB GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.22 ko:K06178 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 SRR25158195_k127_2890120_4 522373.Smlt3265 2.077e-76 259.0 COG5400@1|root,COG5400@2|Bacteria,1P2T5@1224|Proteobacteria,1T0V8@1236|Gammaproteobacteria,1X7CP@135614|Xanthomonadales 135614|Xanthomonadales S conserved protein UCP033924 - - - - - - - - - - - - - SRR25158195_k127_2890120_2 1429851.X548_11965 1.937e-174 550.0 COG0388@1|root,COG0388@2|Bacteria,1MXBR@1224|Proteobacteria,1RQ4Z@1236|Gammaproteobacteria,1X4JY@135614|Xanthomonadales 135614|Xanthomonadales S carbon-nitrogen hydrolase - - 3.5.1.3 ko:K13566 ko00250,map00250 - R00269,R00348 RC00010 ko00000,ko00001,ko01000 - - - CN_hydrolase SRR25158195_k127_2890120_1 1429851.X548_11970 2.957e-247 764.0 COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,1RNN0@1236|Gammaproteobacteria,1X49S@135614|Xanthomonadales 135614|Xanthomonadales E aminotransferase ybdL - 2.6.1.88 ko:K14287 - - R08618 RC00006,RC00025 ko00000,ko01000,ko01007 - - - Aminotran_1_2 SRR25158195_k127_2890120_5 522373.Smlt3268 6.752e-52 185.0 COG4133@1|root,COG4133@2|Bacteria,1MZPC@1224|Proteobacteria,1S3R2@1236|Gammaproteobacteria,1X4BP@135614|Xanthomonadales 135614|Xanthomonadales O once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system ccmA - 3.6.3.41 ko:K02193 ko02010,map02010 M00259 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.107 - - ABC_tran SRR25158195_k127_2893591_1 522373.Smlt1600 4.304e-162 511.0 COG0621@1|root,COG0621@2|Bacteria,1MURS@1224|Proteobacteria,1RMD8@1236|Gammaproteobacteria,1X3HB@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine miaB - 2.8.4.3 ko:K06168 - - R10645,R10646,R10647 RC00003,RC00980,RC03221,RC03222 ko00000,ko01000,ko03016 - - - Radical_SAM,TRAM,UPF0004 SRR25158195_k127_2893591_2 391008.Smal_1358 5.63e-111 380.0 COG0625@1|root,COG0625@2|Bacteria,1RA05@1224|Proteobacteria,1SKAG@1236|Gammaproteobacteria,1XCI5@135614|Xanthomonadales 135614|Xanthomonadales H Glutathione S-transferase - - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C_2,GST_N SRR25158195_k127_2893591_0 522373.Smlt1602 3.25e-191 601.0 COG2378@1|root,COG2378@2|Bacteria,1R98A@1224|Proteobacteria,1SYF1@1236|Gammaproteobacteria,1X5KZ@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator dnrO - - - - - - - - - - - HTH_11,WYL SRR25158195_k127_2893591_3 391008.Smal_1360 2.875e-74 256.0 COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,1S8R3@1236|Gammaproteobacteria,1XC67@135614|Xanthomonadales 135614|Xanthomonadales M transglycosylase - - - - - - - - - - - - DUF4124,SLT SRR25158195_k127_289832_2 637910.ROD_35351 3.327e-44 170.0 2DMX4@1|root,32U70@2|Bacteria,1N4CV@1224|Proteobacteria,1SAAP@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Domain of unknown function (DUF1911) - - - - - - - - - - - - DUF1910,DUF1911 SRR25158195_k127_289832_1 283699.D172_2042 2.524e-44 170.0 2DMX4@1|root,32U70@2|Bacteria,1N4CV@1224|Proteobacteria,1SAAP@1236|Gammaproteobacteria,2Q3Y5@267888|Pseudoalteromonadaceae 1236|Gammaproteobacteria S Domain of unknown function (DUF1910) - - - - - - - - - - - - DUF1910,DUF1911 SRR25158195_k127_289832_0 391008.Smal_1301 4.633e-308 952.0 COG2199@1|root,COG3292@1|root,COG3292@2|Bacteria,COG3706@2|Bacteria,1R9NB@1224|Proteobacteria,1S1MC@1236|Gammaproteobacteria,1XCAK@135614|Xanthomonadales 135614|Xanthomonadales T Two component regulator propeller - - - - - - - - - - - - GGDEF,Reg_prop,Y_Y_Y SRR25158195_k127_289876_5 522373.Smlt4650 1.042e-40 153.0 COG2951@1|root,COG3409@1|root,COG2951@2|Bacteria,COG3409@2|Bacteria,1MUZ3@1224|Proteobacteria,1RMQ6@1236|Gammaproteobacteria,1X3YN@135614|Xanthomonadales 135614|Xanthomonadales M Lytic murein transglycosylase - - 5.1.3.15 ko:K01792 ko00010,ko01100,ko01110,ko01120,ko01130,map00010,map01100,map01110,map01120,map01130 - R02739 RC00563 ko00000,ko00001,ko01000 - - - Aldose_epim,PG_binding_1,SLT_2 SRR25158195_k127_289876_2 391008.Smal_3998 5.94e-182 574.0 COG4301@1|root,COG4301@2|Bacteria,1MUCG@1224|Proteobacteria,1RR44@1236|Gammaproteobacteria,1X4P9@135614|Xanthomonadales 135614|Xanthomonadales S Methyltransferase - - - - - - - - - - - - Methyltransf_33 SRR25158195_k127_289876_1 391008.Smal_3999 2.61e-251 779.0 COG1262@1|root,COG1262@2|Bacteria,1MUNC@1224|Proteobacteria,1RQI4@1236|Gammaproteobacteria,1X38X@135614|Xanthomonadales 135614|Xanthomonadales S DinB superfamily - - - - - - - - - - - - DinB_2,FGE-sulfatase SRR25158195_k127_289876_4 391008.Smal_4001 4.154e-66 241.0 COG3012@1|root,COG3012@2|Bacteria,1MZZK@1224|Proteobacteria,1S9FV@1236|Gammaproteobacteria,1X7KF@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0225 family - - - ko:K09858 - - - - ko00000 - - - SEC-C SRR25158195_k127_289876_3 522373.Smlt4655 3.797e-159 502.0 COG0730@1|root,COG0730@2|Bacteria,1MXNM@1224|Proteobacteria,1RRH4@1236|Gammaproteobacteria,1X686@135614|Xanthomonadales 135614|Xanthomonadales S membrane transporter protein - - - ko:K07090 - - - - ko00000 - - - TauE SRR25158195_k127_289876_0 391008.Smal_4003 0.0 1393.0 COG4913@1|root,COG4913@2|Bacteria,1N16Z@1224|Proteobacteria,1RPTX@1236|Gammaproteobacteria,1X354@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - AAA_29,SbcCD_C SRR25158195_k127_2912710_2 522373.Smlt1436 3.57e-122 393.0 COG0745@1|root,COG0745@2|Bacteria,1MVCB@1224|Proteobacteria,1S179@1236|Gammaproteobacteria,1X3AJ@135614|Xanthomonadales 135614|Xanthomonadales T response regulator creB - - ko:K07663 ko02020,map02020 M00449 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_2912710_0 1429851.X548_04745 9.297e-275 849.0 COG0642@1|root,COG2205@2|Bacteria,1N17V@1224|Proteobacteria,1RPVU@1236|Gammaproteobacteria,1X59X@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase creC - 2.7.13.3 ko:K07641 ko02020,map02020 M00449 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA SRR25158195_k127_2912710_1 391008.Smal_1206 6.421e-226 704.0 COG4452@1|root,COG4452@2|Bacteria,1MVVR@1224|Proteobacteria,1RQRZ@1236|Gammaproteobacteria,1X4YB@135614|Xanthomonadales 135614|Xanthomonadales V Inner membrane protein involved in colicin E2 resistance creD - - ko:K06143 - - - - ko00000 - - - CreD SRR25158195_k127_2913976_4 391008.Smal_0255 3.588e-05 48.0 COG1131@1|root,COG1131@2|Bacteria,1RCWC@1224|Proteobacteria,1S27V@1236|Gammaproteobacteria,1X4EE@135614|Xanthomonadales 135614|Xanthomonadales V ABC-type multidrug transport system, ATPase component - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran SRR25158195_k127_2913976_0 391008.Smal_0257 2.167e-210 659.0 COG4585@1|root,COG4585@2|Bacteria,1R6FX@1224|Proteobacteria,1S0UD@1236|Gammaproteobacteria,1X45P@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - 2.7.13.3 ko:K07778 ko02020,map02020 M00479 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HATPase_c_2,HisKA_3 SRR25158195_k127_2913976_2 391008.Smal_0258 8.993e-119 385.0 COG2197@1|root,COG2197@2|Bacteria,1R840@1224|Proteobacteria,1S0CT@1236|Gammaproteobacteria,1X3MU@135614|Xanthomonadales 135614|Xanthomonadales KT COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain YH67_01295 - - ko:K07693 ko02020,map02020 M00479 - - ko00000,ko00001,ko00002,ko02022 - - - GerE,Response_reg SRR25158195_k127_2913976_3 391008.Smal_0259 2.89e-108 353.0 COG3038@1|root,COG3038@2|Bacteria,1REWF@1224|Proteobacteria,1SDF3@1236|Gammaproteobacteria,1XCN4@135614|Xanthomonadales 135614|Xanthomonadales C Cytochrome B561 - - - ko:K12262 - - - - ko00000 - - - Ni_hydr_CYTB SRR25158195_k127_2913976_1 1429851.X548_20615 3.098e-148 471.0 COG0753@1|root,COG0753@2|Bacteria,1MUXZ@1224|Proteobacteria,1RNE7@1236|Gammaproteobacteria,1X4UW@135614|Xanthomonadales 135614|Xanthomonadales C Has an organic peroxide-dependent peroxidase activity srpA - 1.11.1.6 ko:K03781 ko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014 M00532 R00009,R00602,R02670 RC00034,RC00767,RC02141,RC02755 ko00000,ko00001,ko00002,ko01000 - - - Catalase SRR25158195_k127_2918439_0 391008.Smal_0105 0.0 1112.0 COG0457@1|root,COG0457@2|Bacteria,1R8UZ@1224|Proteobacteria,1RQ7E@1236|Gammaproteobacteria,1X4WX@135614|Xanthomonadales 135614|Xanthomonadales S Tetratricopeptide repeats - - - - - - - - - - - - TPR_16,TPR_19,TPR_2,TPR_8 SRR25158195_k127_2918439_1 391008.Smal_0104 8.976e-142 450.0 COG0429@1|root,COG0429@2|Bacteria,1MWV1@1224|Proteobacteria,1RN39@1236|Gammaproteobacteria,1X3GG@135614|Xanthomonadales 135614|Xanthomonadales S hydrolase of the alpha beta-hydrolase fold - - - ko:K07019 - - - - ko00000 - - - Abhydrolase_1,Abhydrolase_6,Hydrolase_4 SRR25158195_k127_2919733_0 522373.Smlt0449 0.0 1189.0 COG1472@1|root,COG1472@2|Bacteria,1MVIV@1224|Proteobacteria,1RMA0@1236|Gammaproteobacteria,1X4AX@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 3 family bglX - 3.2.1.21 ko:K05349 ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 - R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 ko00000,ko00001,ko01000 - GH3 - Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C SRR25158195_k127_2925930_2 522373.Smlt2085 1.614e-82 280.0 COG4705@1|root,COG4705@2|Bacteria,1MVMJ@1224|Proteobacteria,1S35X@1236|Gammaproteobacteria,1XA6Y@135614|Xanthomonadales 135614|Xanthomonadales S Repeat of Unknown Function (DUF347) - - - - - - - - - - - - DUF347 SRR25158195_k127_2925930_3 522373.Smlt2086 2.54e-61 214.0 2E49F@1|root,32Z57@2|Bacteria,1N82K@1224|Proteobacteria,1SJF6@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Domain of unknown function (DUF4180) - - - - - - - - - - - - DUF4180 SRR25158195_k127_2925930_0 360910.BAV1606 2.069e-106 354.0 COG2267@1|root,COG2267@2|Bacteria,1PSR9@1224|Proteobacteria,2W08D@28216|Betaproteobacteria 28216|Betaproteobacteria I alpha/beta hydrolase fold - - - - - - - - - - - - Abhydrolase_1,DUF4180 SRR25158195_k127_2925930_5 360910.BAV1607 5.766e-33 132.0 COG0789@1|root,COG0789@2|Bacteria,1QZD4@1224|Proteobacteria 1224|Proteobacteria K Helix-turn-helix domain - - - - - - - - - - - - HTH_17 SRR25158195_k127_2925930_1 522373.Smlt2089 1.148e-93 308.0 COG3832@1|root,COG3832@2|Bacteria,1RDXJ@1224|Proteobacteria,1SN77@1236|Gammaproteobacteria,1X7VE@135614|Xanthomonadales 135614|Xanthomonadales S Activator of Hsp90 ATPase homolog 1-like protein - - - - - - - - - - - - AHSA1 SRR25158195_k127_2925930_4 391008.Smal_1684 1.555e-59 207.0 COG0640@1|root,COG0640@2|Bacteria,1RIJ9@1224|Proteobacteria,1SNVH@1236|Gammaproteobacteria,1X7QM@135614|Xanthomonadales 135614|Xanthomonadales K helix_turn_helix, Arsenical Resistance Operon Repressor - - - - - - - - - - - - HTH_20 SRR25158195_k127_2925930_6 1114970.PSF113_0806 2.337e-15 76.0 COG0300@1|root,COG0300@2|Bacteria,1RGKZ@1224|Proteobacteria,1T1UE@1236|Gammaproteobacteria,1YRSQ@136843|Pseudomonas fluorescens group 1236|Gammaproteobacteria S KR domain - - - - - - - - - - - - adh_short SRR25158195_k127_2931384_0 159087.Daro_2204 1.328e-78 278.0 28MZS@1|root,2ZB6E@2|Bacteria,1R8QV@1224|Proteobacteria,2VMF4@28216|Betaproteobacteria,2KYJP@206389|Rhodocyclales 206389|Rhodocyclales - - - - - - - - - - - - - - - SRR25158195_k127_2931384_4 455436.DS989810_gene42 1.922e-07 56.0 2DS85@1|root,33EYM@2|Bacteria,1NJQN@1224|Proteobacteria,1SHH9@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_2931384_3 1122164.JHWF01000022_gene1710 6.031e-13 71.0 2APXH@1|root,31F27@2|Bacteria,1QCFC@1224|Proteobacteria,1T85P@1236|Gammaproteobacteria,1JGAF@118969|Legionellales 118969|Legionellales - - - - - - - - - - - - - - - SRR25158195_k127_2931384_1 1429851.X548_05875 2.063e-66 229.0 COG1073@1|root,COG1073@2|Bacteria,1NATS@1224|Proteobacteria,1T49S@1236|Gammaproteobacteria,1X6DU@135614|Xanthomonadales 135614|Xanthomonadales S alpha beta - - - - - - - - - - - - - SRR25158195_k127_2933859_1 522373.Smlt1165 7.325e-87 287.0 COG1764@1|root,COG1764@2|Bacteria,1RH9U@1224|Proteobacteria,1SBY9@1236|Gammaproteobacteria,1X648@135614|Xanthomonadales 135614|Xanthomonadales O OsmC-like protein - - - ko:K04063 - - - - ko00000 - - - OsmC SRR25158195_k127_2933859_0 522373.Smlt1166 1.991e-166 527.0 COG0384@1|root,COG0384@2|Bacteria,1MUAS@1224|Proteobacteria,1RPWM@1236|Gammaproteobacteria,1X3G3@135614|Xanthomonadales 135614|Xanthomonadales S phenazine biosynthesis protein PhzF family - - - - - - - - - - - - PhzC-PhzF SRR25158195_k127_2933859_2 391008.Smal_1010 3.453e-74 251.0 COG0384@1|root,COG0384@2|Bacteria,1MUAS@1224|Proteobacteria,1RPWM@1236|Gammaproteobacteria,1X3IU@135614|Xanthomonadales 135614|Xanthomonadales S phenazine biosynthesis protein - - - - - - - - - - - - PhzC-PhzF SRR25158195_k127_2942634_2 391008.Smal_2632 5.617e-53 186.0 COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,1RMFF@1236|Gammaproteobacteria,1X3A1@135614|Xanthomonadales 135614|Xanthomonadales C E3 component of 2-oxoglutarate dehydrogenase complex ldp - 1.8.1.4 ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - Pyr_redox_2,Pyr_redox_dim SRR25158195_k127_2942634_3 391008.Smal_2634 5.929e-33 133.0 2EK70@1|root,33DXD@2|Bacteria,1NA99@1224|Proteobacteria,1SJFZ@1236|Gammaproteobacteria,1X82Y@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2942634_1 391008.Smal_2635 0.0 1031.0 COG3540@1|root,COG3540@2|Bacteria,1MWAF@1224|Proteobacteria,1RNY4@1236|Gammaproteobacteria,1X697@135614|Xanthomonadales 135614|Xanthomonadales P Alkaline phosphatase phoD2 - 3.1.3.1 ko:K01113 ko00790,ko01100,ko02020,map00790,map01100,map02020 M00126 R04620 RC00017 ko00000,ko00001,ko00002,ko01000 - - - PhoD,PhoD_N,TAT_signal SRR25158195_k127_2942634_0 391008.Smal_2636 0.0 1440.0 COG4774@1|root,COG4774@2|Bacteria,1QU2Y@1224|Proteobacteria,1T1NS@1236|Gammaproteobacteria,1XCTX@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane protein beta-barrel family - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_2943118_1 391008.Smal_0846 1.555e-141 454.0 COG0631@1|root,COG0631@2|Bacteria,1R7UF@1224|Proteobacteria,1RQUV@1236|Gammaproteobacteria,1X4AA@135614|Xanthomonadales 135614|Xanthomonadales T phosphatase - - 3.1.3.16 ko:K20074 - - - - ko00000,ko01000,ko01009 - - - PP2C_2 SRR25158195_k127_2943118_0 522373.Smlt0998 1.293e-149 474.0 COG0847@1|root,COG0847@2|Bacteria,1MV8Z@1224|Proteobacteria,1RNHQ@1236|Gammaproteobacteria,1X487@135614|Xanthomonadales 135614|Xanthomonadales L DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease dnaQ - 2.7.7.7 ko:K02342 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - RNase_T SRR25158195_k127_2943118_2 522373.Smlt0997 3.303e-98 325.0 COG0328@1|root,COG0328@2|Bacteria,1RCZ1@1224|Proteobacteria,1S3YC@1236|Gammaproteobacteria,1X688@135614|Xanthomonadales 135614|Xanthomonadales L Endonuclease that specifically degrades the RNA of RNA- DNA hybrids rnhA - 3.1.26.4 ko:K03469 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - RNase_H SRR25158195_k127_2943118_3 1429851.X548_02830 5.243e-52 183.0 COG0500@1|root,COG2226@2|Bacteria,1QTWC@1224|Proteobacteria,1S5QU@1236|Gammaproteobacteria,1X7H7@135614|Xanthomonadales 135614|Xanthomonadales Q Methyl-transferase - - - - - - - - - - - - Methyltransf_11 SRR25158195_k127_2952956_1 522373.Smlt4595 1e-323 992.0 COG0210@1|root,COG0210@2|Bacteria,1MU0G@1224|Proteobacteria,1RNJI@1236|Gammaproteobacteria,1X3W3@135614|Xanthomonadales 135614|Xanthomonadales L Unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present uvrD - 3.6.4.12 ko:K03657 ko03420,ko03430,map03420,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - UvrD-helicase,UvrD_C SRR25158195_k127_2952956_3 391008.Smal_3945 1.361e-108 354.0 2BCQC@1|root,326AQ@2|Bacteria,1RKFR@1224|Proteobacteria,1S7Q0@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Psort location Cytoplasmic, score 8.96 - - - - - - - - - - - - - SRR25158195_k127_2952956_4 391008.Smal_3943 4.074e-87 289.0 COG0589@1|root,COG0589@2|Bacteria,1MZ3K@1224|Proteobacteria,1SFMR@1236|Gammaproteobacteria,1X7HK@135614|Xanthomonadales 135614|Xanthomonadales T Universal stress protein - - - - - - - - - - - - Usp SRR25158195_k127_2952956_6 1429851.X548_18560 3.723e-53 188.0 2C1YJ@1|root,32ZXK@2|Bacteria,1N98H@1224|Proteobacteria,1SD8N@1236|Gammaproteobacteria,1X871@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2782) - - - - - - - - - - - - DUF2782 SRR25158195_k127_2952956_0 391008.Smal_3941 0.0 1758.0 COG0258@1|root,COG0749@1|root,COG0258@2|Bacteria,COG0749@2|Bacteria,1MU31@1224|Proteobacteria,1RNBG@1236|Gammaproteobacteria,1X4KE@135614|Xanthomonadales 135614|Xanthomonadales L In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity polA - 2.7.7.7 ko:K02335 ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440 - R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko01000,ko03032,ko03400 - - - 5_3_exonuc,5_3_exonuc_N,DNA_pol_A,DNA_pol_A_exo1 SRR25158195_k127_2952956_5 522373.Smlt4588 1.54e-80 274.0 COG2323@1|root,COG2323@2|Bacteria,1RATW@1224|Proteobacteria,1SIHC@1236|Gammaproteobacteria,1X6TG@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - DUF421 SRR25158195_k127_2952956_2 391008.Smal_3938 3.585e-200 625.0 COG0408@1|root,COG0408@2|Bacteria,1MWMF@1224|Proteobacteria,1RMM8@1236|Gammaproteobacteria,1X3RT@135614|Xanthomonadales 135614|Xanthomonadales H Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX hemF GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 ko:K00228 ko00860,ko01100,ko01110,map00860,map01100,map01110 M00121 R03220 RC00884 ko00000,ko00001,ko00002,ko01000 - - - Coprogen_oxidas SRR25158195_k127_2952956_7 391008.Smal_3935 3.861e-33 132.0 2A17R@1|root,30PDU@2|Bacteria,1QHB2@1224|Proteobacteria,1TEWK@1236|Gammaproteobacteria,1XBVI@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_2956018_0 502025.Hoch_0296 2.335e-147 472.0 COG0451@1|root,COG0451@2|Bacteria,1MXKV@1224|Proteobacteria,42MI8@68525|delta/epsilon subdivisions,2WJDT@28221|Deltaproteobacteria,2YU9G@29|Myxococcales 28221|Deltaproteobacteria GM NAD-dependent epimerase dehydratase - - - - - - - - - - - - Epimerase SRR25158195_k127_2956018_1 1295642.H839_03566 1.579e-16 82.0 COG2361@1|root,COG2361@2|Bacteria,1VFEB@1239|Firmicutes,4HMFT@91061|Bacilli,1WGRQ@129337|Geobacillus 91061|Bacilli S Protein of unknown function DUF86 - - - - - - - - - - - - DUF86 SRR25158195_k127_2959613_2 1429851.X548_08380 1.265e-226 706.0 COG1749@1|root,COG1749@2|Bacteria,1MU5J@1224|Proteobacteria,1RMWX@1236|Gammaproteobacteria,1X2YC@135614|Xanthomonadales 135614|Xanthomonadales N Flagellar hook protein FlgE flgE - - ko:K02390 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - FlaE,Flg_bb_rod,Flg_bbr_C SRR25158195_k127_2959613_4 391008.Smal_1904 1.02e-126 417.0 COG1843@1|root,COG1843@2|Bacteria,1MXCG@1224|Proteobacteria,1RPZI@1236|Gammaproteobacteria,1X5ZA@135614|Xanthomonadales 135614|Xanthomonadales N Required for flagellar hook formation. May act as a scaffolding protein flgD - - ko:K02389 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - FLgD_tudor,FlgD,FlgD_ig SRR25158195_k127_2959613_6 391008.Smal_1905 4.154e-76 256.0 COG1558@1|root,COG1558@2|Bacteria,1RHI3@1224|Proteobacteria,1S653@1236|Gammaproteobacteria,1X6QJ@135614|Xanthomonadales 135614|Xanthomonadales N Belongs to the flagella basal body rod proteins family flgC - - ko:K02388 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - Flg_bb_rod,Flg_bbr_C SRR25158195_k127_2959613_7 522373.Smlt2317 6.334e-76 257.0 COG1815@1|root,COG1815@2|Bacteria,1MZ8P@1224|Proteobacteria,1S9DS@1236|Gammaproteobacteria,1X7A3@135614|Xanthomonadales 135614|Xanthomonadales N Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body flgB - - ko:K02387 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - Flg_bb_rod SRR25158195_k127_2959613_3 391008.Smal_1907 9.972e-191 611.0 COG0784@1|root,COG0835@1|root,COG0784@2|Bacteria,COG0835@2|Bacteria,1N81M@1224|Proteobacteria,1RPS1@1236|Gammaproteobacteria,1X4JT@135614|Xanthomonadales 135614|Xanthomonadales T chemotaxis signal transduction protein cheV - - ko:K03415 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - CheW,Response_reg SRR25158195_k127_2959613_5 522373.Smlt2319 4.031e-112 384.0 COG1261@1|root,COG1261@2|Bacteria,1N1SA@1224|Proteobacteria,1S8SQ@1236|Gammaproteobacteria,1X65B@135614|Xanthomonadales 135614|Xanthomonadales N Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly flgA - - ko:K02386 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - ChapFlgA SRR25158195_k127_2959613_9 391008.Smal_1909 2.091e-52 186.0 COG2747@1|root,COG2747@2|Bacteria,1NGJA@1224|Proteobacteria,1SGQ4@1236|Gammaproteobacteria,1X87M@135614|Xanthomonadales 135614|Xanthomonadales N Flagellar protein flgM - - ko:K02398 ko02020,ko02025,ko02026,ko02040,map02020,map02025,map02026,map02040 - - - ko00000,ko00001,ko02035 - - - FlgM SRR25158195_k127_2959613_8 1429851.X548_08415 1.047e-56 199.0 2ANPW@1|root,31DPE@2|Bacteria,1QB0P@1224|Proteobacteria,1T6HR@1236|Gammaproteobacteria,1X7IS@135614|Xanthomonadales 135614|Xanthomonadales S flagella protein flgN - - - - - - - - - - - - SRR25158195_k127_2959613_1 1429851.X548_08420 1.792e-254 786.0 COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,1RSDZ@1236|Gammaproteobacteria,1X3Y5@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA SRR25158195_k127_2959613_0 522373.Smlt2323 0.0 1116.0 COG3437@1|root,COG5001@1|root,COG3437@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X5HD@135614|Xanthomonadales 135614|Xanthomonadales T C-di-GMP phosphodiesterase - - - - - - - - - - - - EAL,GGDEF,Response_reg SRR25158195_k127_2960662_0 1429851.X548_14695 3.461e-271 838.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X3JU@135614|Xanthomonadales 135614|Xanthomonadales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family acrF - - ko:K18138 ko01501,ko01503,map01501,map01503 M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2 - - ACR_tran SRR25158195_k127_2960662_1 522373.Smlt3788 3.44e-206 651.0 COG0845@1|root,COG0845@2|Bacteria,1MUFW@1224|Proteobacteria,1RQJ9@1236|Gammaproteobacteria,1XCGD@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - HlyD_D23 SRR25158195_k127_2960662_3 391008.Smal_3209 6.957e-199 621.0 COG0583@1|root,COG0583@2|Bacteria,1MU8N@1224|Proteobacteria,1RN7T@1236|Gammaproteobacteria,1X43G@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator cysB - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_2960662_2 522373.Smlt3794 1.074e-199 625.0 COG0031@1|root,COG0031@2|Bacteria,1MUBE@1224|Proteobacteria,1RN6J@1236|Gammaproteobacteria,1X393@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the cysteine synthase cystathionine beta- synthase family cysK - 2.5.1.47 ko:K01738 ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230 M00021 R00897,R03601,R04859 RC00020,RC02814,RC02821 ko00000,ko00001,ko00002,ko01000 - - - PALP SRR25158195_k127_2960662_4 1118235.CAJH01000022_gene1442 7.28e-12 66.0 COG2110@1|root,COG2110@2|Bacteria,1RCWP@1224|Proteobacteria,1S3WJ@1236|Gammaproteobacteria,1X6PT@135614|Xanthomonadales 135614|Xanthomonadales S phosphatase homologous to the C-terminal domain of histone macroH2A1 - - - - - - - - - - - - Macro SRR25158195_k127_2961444_0 522373.Smlt0964 9.876e-216 672.0 COG0285@1|root,COG0285@2|Bacteria,1MVCH@1224|Proteobacteria,1RMB0@1236|Gammaproteobacteria,1X32Z@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the folylpolyglutamate synthase family folC - 6.3.2.12,6.3.2.17 ko:K11754 ko00790,ko01100,map00790,map01100 M00126,M00841 R00942,R02237,R04241 RC00064,RC00090,RC00162 ko00000,ko00001,ko00002,ko01000 - - - Mur_ligase_C,Mur_ligase_M SRR25158195_k127_2961444_1 522373.Smlt0965 1.166e-161 515.0 COG3147@1|root,COG3147@2|Bacteria,1NGE3@1224|Proteobacteria,1SH3N@1236|Gammaproteobacteria,1X4NY@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - SPOR SRR25158195_k127_2961444_2 1118235.CAJH01000057_gene3268 2.761e-87 296.0 COG1286@1|root,COG1286@2|Bacteria,1PT6K@1224|Proteobacteria,1SWNT@1236|Gammaproteobacteria,1X7D5@135614|Xanthomonadales 135614|Xanthomonadales S Colicin v production protein cvpA - - ko:K03558 - - - - ko00000 - - - Colicin_V SRR25158195_k127_2961444_3 522373.Smlt0967 2.938e-62 214.0 COG0034@1|root,COG0034@2|Bacteria,1MU0V@1224|Proteobacteria,1RMYA@1236|Gammaproteobacteria,1X3ZZ@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine purF - 2.4.2.14 ko:K00764 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048 R01072 RC00010,RC02724,RC02752 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase_6,Pribosyltran SRR25158195_k127_2972570_3 391008.Smal_0251 9.206e-100 327.0 COG0577@1|root,COG0577@2|Bacteria,1MX7X@1224|Proteobacteria,1RRH7@1236|Gammaproteobacteria,1X430@135614|Xanthomonadales 135614|Xanthomonadales V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD SRR25158195_k127_2972570_0 391008.Smal_0252 9.688e-238 738.0 COG0577@1|root,COG0577@2|Bacteria,1MWBK@1224|Proteobacteria,1RPZF@1236|Gammaproteobacteria,1X3MX@135614|Xanthomonadales 135614|Xanthomonadales V ABC-type antimicrobial peptide transport system, permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD SRR25158195_k127_2972570_2 522373.Smlt0362 9.537e-143 457.0 COG1136@1|root,COG1136@2|Bacteria,1MU45@1224|Proteobacteria,1RSA2@1236|Gammaproteobacteria,1X3CK@135614|Xanthomonadales 135614|Xanthomonadales V ABC transporter tptC - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran SRR25158195_k127_2972570_1 522373.Smlt0363 3.335e-232 724.0 COG0845@1|root,COG0845@2|Bacteria,1MUMV@1224|Proteobacteria,1S0KD@1236|Gammaproteobacteria,1X3ST@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family acrE - - - - - - - - - - - HlyD_D23 SRR25158195_k127_2982129_0 391008.Smal_1603 3.917e-238 739.0 COG2223@1|root,COG2223@2|Bacteria,1MXAA@1224|Proteobacteria,1RMZZ@1236|Gammaproteobacteria,1X56Q@135614|Xanthomonadales 135614|Xanthomonadales P Major facilitator superfamily - - - ko:K08223 - - - - ko00000,ko02000 2.A.1.35 - - MFS_1,Sugar_tr SRR25158195_k127_2982129_1 522373.Smlt1994 5.171e-177 565.0 COG1917@1|root,COG2207@1|root,COG1917@2|Bacteria,COG2207@2|Bacteria,1P1FH@1224|Proteobacteria,1T1HH@1236|Gammaproteobacteria,1XD99@135614|Xanthomonadales 135614|Xanthomonadales K AraC-like ligand binding domain - - - - - - - - - - - - AraC_binding,HTH_18 SRR25158195_k127_2982129_2 522373.Smlt1993 7.241e-95 311.0 COG0484@1|root,COG0484@2|Bacteria,1MVMS@1224|Proteobacteria,1RNHY@1236|Gammaproteobacteria,1X47P@135614|Xanthomonadales 135614|Xanthomonadales O ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins dnaJ - - ko:K03686 - - - - ko00000,ko03029,ko03110 - - - DnaJ,DnaJ_C,DnaJ_CXXCXGXG SRR25158195_k127_2989966_5 391008.Smal_0032 6.069e-74 249.0 COG3186@1|root,COG3186@2|Bacteria,1MU29@1224|Proteobacteria,1RQBJ@1236|Gammaproteobacteria,1X3NW@135614|Xanthomonadales 135614|Xanthomonadales E Phenylalanine-4-hydroxylase phhA - 1.14.16.1 ko:K00500 ko00360,ko00400,ko00790,ko01100,ko01230,map00360,map00400,map00790,map01100,map01230 - R01795,R07211 RC00490 ko00000,ko00001,ko01000 - - - Biopterin_H SRR25158195_k127_2989966_4 522373.Smlt0078 2.256e-96 316.0 COG1522@1|root,COG1522@2|Bacteria,1MX7R@1224|Proteobacteria,1RPGA@1236|Gammaproteobacteria,1XCKQ@135614|Xanthomonadales 135614|Xanthomonadales K AsnC family transcriptional regulator - - - ko:K03719 - - - - ko00000,ko03000,ko03036 - - - AsnC_trans_reg,HTH_24,HTH_AsnC-type SRR25158195_k127_2989966_1 522373.Smlt0080 9.342e-194 608.0 COG1752@1|root,COG1752@2|Bacteria,1MUM9@1224|Proteobacteria,1RRA1@1236|Gammaproteobacteria,1XBZ5@135614|Xanthomonadales 135614|Xanthomonadales S Patatin-like phospholipase - - - ko:K07001 - - - - ko00000 - - - Patatin SRR25158195_k127_2989966_2 1211114.ALIP01000022_gene2480 5.637e-169 543.0 COG2013@1|root,COG2013@2|Bacteria,1NBBE@1224|Proteobacteria,1RZ6E@1236|Gammaproteobacteria,1X38A@135614|Xanthomonadales 135614|Xanthomonadales S Mitochondrial biogenesis AIM24 - - - - - - - - - - - - AIM24 SRR25158195_k127_2989966_6 391008.Smal_0037 2.534e-64 222.0 COG1629@1|root,COG4774@1|root,COG1629@2|Bacteria,COG4774@2|Bacteria,1NMCN@1224|Proteobacteria,1T2IM@1236|Gammaproteobacteria,1XD6E@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_2989966_0 1429851.X548_19365 0.0 1270.0 COG1629@1|root,COG4774@1|root,COG1629@2|Bacteria,COG4774@2|Bacteria,1NMCN@1224|Proteobacteria,1T2IM@1236|Gammaproteobacteria,1XD6E@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_2989966_3 522373.Smlt0084 3.746e-156 496.0 COG0671@1|root,COG0671@2|Bacteria,1PM2D@1224|Proteobacteria,1RQXK@1236|Gammaproteobacteria,1X6C2@135614|Xanthomonadales 135614|Xanthomonadales I Acid phosphatase phoC - 3.1.3.2 ko:K09474 ko00740,ko01100,ko02020,map00740,map01100,map02020 - R00548 RC00017 ko00000,ko00001,ko01000 - - - PAP2 SRR25158195_k127_2990868_2 1429851.X548_16170 4.342e-107 348.0 COG0577@1|root,COG0577@2|Bacteria,1QSVW@1224|Proteobacteria,1RPBM@1236|Gammaproteobacteria,1X4WM@135614|Xanthomonadales 135614|Xanthomonadales V ABC-type antimicrobial peptide transport system, permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD SRR25158195_k127_2990868_0 1429851.X548_16175 8.135e-212 664.0 COG0577@1|root,COG0577@2|Bacteria,1MXFC@1224|Proteobacteria,1RQX0@1236|Gammaproteobacteria,1X3KM@135614|Xanthomonadales 135614|Xanthomonadales V ABC-type antimicrobial peptide transport system, permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD SRR25158195_k127_2990868_3 1429851.X548_16180 3.343e-37 146.0 COG0793@1|root,COG0793@2|Bacteria 2|Bacteria M Belongs to the peptidase S41A family - - - - - - - - - - - - PDZ,PDZ_2,Peptidase_S41 SRR25158195_k127_2990868_1 391008.Smal_3505 1.05e-211 661.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,1RMCK@1236|Gammaproteobacteria,1X3II@135614|Xanthomonadales 135614|Xanthomonadales T CheY-like receiver AAA-type ATPase and DNA-binding domains - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat SRR25158195_k127_2993845_1 1429851.X548_18090 2.208e-236 736.0 COG1721@1|root,COG1721@2|Bacteria,1MXDI@1224|Proteobacteria,1RQSS@1236|Gammaproteobacteria,1X3P2@135614|Xanthomonadales 135614|Xanthomonadales S conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - - - - - - - - - - DUF58 SRR25158195_k127_2993845_3 522373.Smlt4485 5.535e-195 622.0 COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,1RN5G@1236|Gammaproteobacteria,1X51C@135614|Xanthomonadales 135614|Xanthomonadales S ATPase family associated with various cellular activities (AAA) - - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 SRR25158195_k127_2993845_2 522373.Smlt4484 2.824e-224 700.0 COG3064@1|root,COG3064@2|Bacteria,1NAPH@1224|Proteobacteria,1SBIW@1236|Gammaproteobacteria,1X60D@135614|Xanthomonadales 135614|Xanthomonadales M Membrane - - - - - - - - - - - - DUF4350 SRR25158195_k127_2993845_0 522373.Smlt4483 6.731e-288 893.0 28IAG@1|root,2Z8D2@2|Bacteria,1P5EH@1224|Proteobacteria,1RYCA@1236|Gammaproteobacteria,1X50Q@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4129) - - - - - - - - - - - - DUF4129 SRR25158195_k127_2993845_5 935863.AWZR01000001_gene1769 2.155e-116 389.0 COG1300@1|root,COG1300@2|Bacteria,1Q1GN@1224|Proteobacteria,1RR61@1236|Gammaproteobacteria,1X54U@135614|Xanthomonadales 135614|Xanthomonadales S Stage II sporulation protein M - - - - - - - - - - - - SpoIIM SRR25158195_k127_2993845_4 391008.Smal_3843 1.408e-130 420.0 COG1714@1|root,COG1714@2|Bacteria,1RIE9@1224|Proteobacteria,1S566@1236|Gammaproteobacteria,1X674@135614|Xanthomonadales 135614|Xanthomonadales S membrane protein domain - - - - - - - - - - - - RDD SRR25158195_k127_2993845_6 1429851.X548_18060 4.759e-112 362.0 COG0663@1|root,COG0663@2|Bacteria,1RD76@1224|Proteobacteria,1RPB6@1236|Gammaproteobacteria,1X514@135614|Xanthomonadales 135614|Xanthomonadales S carbonic - - - - - - - - - - - - Hexapep SRR25158195_k127_2993845_7 1442599.JAAN01000004_gene1056 3.632e-20 90.0 COG0445@1|root,COG0445@2|Bacteria,1MU6F@1224|Proteobacteria,1RMM1@1236|Gammaproteobacteria,1X36F@135614|Xanthomonadales 135614|Xanthomonadales D NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 gidA GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - ko:K03495 - - R08701 RC00053,RC00209,RC00870 ko00000,ko03016,ko03036 - - - GIDA,GIDA_assoc SRR25158195_k127_2996246_2 522373.Smlt2758 5.192e-239 741.0 COG1640@1|root,COG1640@2|Bacteria,1QTVJ@1224|Proteobacteria,1RMJW@1236|Gammaproteobacteria,1X3KU@135614|Xanthomonadales 135614|Xanthomonadales G 4-alpha-glucanotransferase - - 2.4.1.25 ko:K00705 ko00500,ko01100,map00500,map01100 - R05196 RC00049 ko00000,ko00001,ko01000 - GH77 - Glyco_hydro_77 SRR25158195_k127_2996246_0 522373.Smlt2757 0.0 1527.0 COG3280@1|root,COG3280@2|Bacteria,1QTVK@1224|Proteobacteria,1T1IP@1236|Gammaproteobacteria,1X2ZG@135614|Xanthomonadales 135614|Xanthomonadales G synthase glgY - 5.4.99.15 ko:K06044 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R01824,R09995 - ko00000,ko00001,ko00002,ko01000 - GH13 - Alpha-amylase,DUF3459 SRR25158195_k127_2996246_1 522373.Smlt2756 0.0 1429.0 COG1523@1|root,COG1523@2|Bacteria,1MU19@1224|Proteobacteria,1RP6F@1236|Gammaproteobacteria,1X4RI@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 13 family glgX1 - 3.2.1.68 ko:K01214 ko00500,ko01100,ko01110,map00500,map01100,map01110 M00565 R09995,R11261 - ko00000,ko00001,ko00002,ko01000 - CBM48,GH13 - Alpha-amylase,CBM_48 SRR25158195_k127_2998633_4 522373.Smlt3657 8.899e-75 257.0 COG0509@1|root,COG0509@2|Bacteria,1RGV7@1224|Proteobacteria,1S656@1236|Gammaproteobacteria,1X6DR@135614|Xanthomonadales 135614|Xanthomonadales E The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein gcvH - - ko:K02437 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 M00532 R01221 RC00022,RC02834 ko00000,ko00001,ko00002 - - - GCV_H SRR25158195_k127_2998633_0 1429851.X548_14010 5.395e-228 709.0 COG0404@1|root,COG0404@2|Bacteria,1MV96@1224|Proteobacteria,1RN2A@1236|Gammaproteobacteria,1X4E4@135614|Xanthomonadales 135614|Xanthomonadales E The glycine cleavage system catalyzes the degradation of glycine gcvT - 2.1.2.10 ko:K00605 ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200 M00532 R01221,R02300,R04125 RC00022,RC00069,RC00183,RC02834 ko00000,ko00001,ko00002,ko01000 - - - GCV_T,GCV_T_C SRR25158195_k127_2998633_5 522373.Smlt3659 1.77e-70 242.0 COG1585@1|root,COG1585@2|Bacteria,1N241@1224|Proteobacteria,1S5W4@1236|Gammaproteobacteria,1X6VZ@135614|Xanthomonadales 135614|Xanthomonadales OU Membrane protein implicated in regulation of membrane protease activity - - - ko:K07340 - - - - ko00000 - - - NfeD SRR25158195_k127_2998633_1 522373.Smlt3660 1.022e-189 595.0 COG0330@1|root,COG0330@2|Bacteria,1MUM8@1224|Proteobacteria,1RNW8@1236|Gammaproteobacteria,1X3MC@135614|Xanthomonadales 135614|Xanthomonadales O Membrane YH67_15415 - - - - - - - - - - - Band_7,Band_7_C SRR25158195_k127_2998633_8 522373.Smlt3661 4.674e-56 209.0 COG4323@1|root,COG4323@2|Bacteria,1N16T@1224|Proteobacteria,1S8V6@1236|Gammaproteobacteria,1X7FS@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF962) - - - - - - - - - - - - DUF962 SRR25158195_k127_2998633_7 1429851.X548_14060 1.987e-66 230.0 COG1742@1|root,COG1742@2|Bacteria,1MZI8@1224|Proteobacteria,1SA4U@1236|Gammaproteobacteria,1X7SH@135614|Xanthomonadales 135614|Xanthomonadales S UPF0060 membrane protein - - - ko:K09771 - - - - ko00000,ko02000 2.A.7.26 - - UPF0060 SRR25158195_k127_2998633_2 391008.Smal_3078 7.509e-169 531.0 COG1694@1|root,COG3956@2|Bacteria,1MVKM@1224|Proteobacteria,1RNVU@1236|Gammaproteobacteria,1X2Z9@135614|Xanthomonadales 135614|Xanthomonadales S Nucleoside triphosphate mazG - 3.6.1.9 ko:K04765 ko00230,ko00240,ko00760,ko00770,ko01100,map00230,map00240,map00760,map00770,map01100 - R00086,R00087,R00103,R00287,R00426,R00515,R00662,R00720,R03004,R03036,R11323 RC00002 ko00000,ko00001,ko01000 - - - MazG SRR25158195_k127_2998633_3 522373.Smlt3664 1.873e-115 372.0 COG1218@1|root,COG1218@2|Bacteria,1N0GY@1224|Proteobacteria,1RP5A@1236|Gammaproteobacteria,1X3YK@135614|Xanthomonadales 135614|Xanthomonadales P nucleotidase cysQ - 3.1.3.7 ko:K01082 ko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130 - R00188,R00508 RC00078 ko00000,ko00001,ko01000,ko03016 - - - Inositol_P SRR25158195_k127_2998633_9 391008.Smal_3079 2.301e-43 160.0 COG1218@1|root,COG1218@2|Bacteria,1N0GY@1224|Proteobacteria,1RP5A@1236|Gammaproteobacteria,1X3YK@135614|Xanthomonadales 135614|Xanthomonadales P nucleotidase cysQ - 3.1.3.7 ko:K01082 ko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130 - R00188,R00508 RC00078 ko00000,ko00001,ko01000,ko03016 - - - Inositol_P SRR25158195_k127_2999238_1 1429851.X548_19720 5.272e-285 880.0 COG0004@1|root,COG0004@2|Bacteria,1NR9F@1224|Proteobacteria,1RNKF@1236|Gammaproteobacteria,1X39P@135614|Xanthomonadales 135614|Xanthomonadales P Ammonium transporter amtB - - ko:K03320 - - - - ko00000,ko02000 1.A.11 - - Ammonium_transp SRR25158195_k127_2999238_2 1429851.X548_19715 7.975e-62 220.0 COG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,1S5ZU@1236|Gammaproteobacteria,1XCKZ@135614|Xanthomonadales 135614|Xanthomonadales K at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA) glnB - - ko:K04751 ko02020,map02020 - - - ko00000,ko00001 - - - P-II SRR25158195_k127_2999238_0 522373.Smlt0151 6.931e-309 948.0 COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,1RMD1@1236|Gammaproteobacteria,1X3GI@135614|Xanthomonadales 135614|Xanthomonadales E highly regulated protein controlled by the addition removal of adenylyl groups by adenylyltransferase from specific tyrosine residues glnA - 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C,Gln-synt_N SRR25158195_k127_2999776_3 1429851.X548_02445 2.275e-35 134.0 COG0100@1|root,COG0100@2|Bacteria,1RD0A@1224|Proteobacteria,1S3Q2@1236|Gammaproteobacteria,1X6JV@135614|Xanthomonadales 135614|Xanthomonadales J Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome rpsK GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02948 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S11 SRR25158195_k127_2999776_1 522373.Smlt0930 2.654e-128 410.0 COG0522@1|root,COG0522@2|Bacteria,1MW0U@1224|Proteobacteria,1RQ38@1236|Gammaproteobacteria,1X3DJ@135614|Xanthomonadales 135614|Xanthomonadales J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit rpsD GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - ko:K02986 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S4,S4 SRR25158195_k127_2999776_0 391008.Smal_0780 5.405e-211 657.0 COG0202@1|root,COG0202@2|Bacteria,1MU75@1224|Proteobacteria,1RMU3@1236|Gammaproteobacteria,1X387@135614|Xanthomonadales 135614|Xanthomonadales K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoA GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 ko:K03040 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_A_CTD,RNA_pol_A_bac,RNA_pol_L SRR25158195_k127_2999776_2 522373.Smlt0933 2.602e-73 247.0 COG0203@1|root,COG0203@2|Bacteria,1RCWN@1224|Proteobacteria,1S3QK@1236|Gammaproteobacteria,1X6D2@135614|Xanthomonadales 135614|Xanthomonadales J Ribosomal protein L17 rplQ GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02879 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L17 SRR25158195_k127_3003604_6 522373.Smlt0813 7.687e-168 527.0 COG0207@1|root,COG0207@2|Bacteria,1MUBD@1224|Proteobacteria,1RPYV@1236|Gammaproteobacteria,1X4HS@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis thyA - 2.1.1.45 ko:K00560 ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523 M00053 R02101 RC00219,RC00332 ko00000,ko00001,ko00002,ko01000 - - - Thymidylat_synt SRR25158195_k127_3003604_11 1429851.X548_01895 3.285e-98 324.0 COG0262@1|root,COG0262@2|Bacteria,1RH0P@1224|Proteobacteria,1S5VH@1236|Gammaproteobacteria,1X6FH@135614|Xanthomonadales 135614|Xanthomonadales H Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis - - 1.5.1.3 ko:K00287 ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523 M00126,M00840 R00936,R00937,R00939,R00940,R02235,R02236,R11765 RC00109,RC00110,RC00158 ko00000,ko00001,ko00002,ko01000 - - - DHFR_1 SRR25158195_k127_3003604_9 522373.Smlt0815 7.904e-120 391.0 COG3738@1|root,COG3738@2|Bacteria,1RE1M@1224|Proteobacteria,1S44B@1236|Gammaproteobacteria,1X6NE@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF1287) - - - ko:K09974 - - - - ko00000 - - - DUF1287 SRR25158195_k127_3003604_3 391008.Smal_0666 1.656e-212 661.0 COG0639@1|root,COG0639@2|Bacteria,1MV10@1224|Proteobacteria,1RPUJ@1236|Gammaproteobacteria,1X3SY@135614|Xanthomonadales 135614|Xanthomonadales T Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP apaH GO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008138,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564 3.6.1.41 ko:K01525 ko00230,map00230 - R00125 RC00002 ko00000,ko00001,ko01000 - - - Metallophos SRR25158195_k127_3003604_13 522373.Smlt0817 2.607e-79 267.0 COG2967@1|root,COG2967@2|Bacteria,1MZ2Z@1224|Proteobacteria,1S8SE@1236|Gammaproteobacteria,1X6WU@135614|Xanthomonadales 135614|Xanthomonadales P protein affecting Mg2 Co2 transport apaG - - ko:K06195 - - - - ko00000 - - - DUF525 SRR25158195_k127_3003604_7 522373.Smlt0818 2.417e-162 517.0 COG0030@1|root,COG0030@2|Bacteria,1MVNU@1224|Proteobacteria,1RMHW@1236|Gammaproteobacteria,1X38K@135614|Xanthomonadales 135614|Xanthomonadales J Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits ksgA GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 ko:K02528 - - R10716 RC00003,RC03257 ko00000,ko01000,ko03009 - - - RrnaAD SRR25158195_k127_3003604_4 391008.Smal_0669 2.651e-199 622.0 COG1995@1|root,COG1995@2|Bacteria,1MX5W@1224|Proteobacteria,1RNZV@1236|Gammaproteobacteria,1X2ZP@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) pdxA - 1.1.1.262 ko:K00097 ko00750,ko01100,map00750,map01100 M00124 R05681,R05837,R07406 RC00089,RC00675,RC01475 ko00000,ko00001,ko00002,ko01000 - - - PdxA SRR25158195_k127_3003604_1 522373.Smlt0820 1.697e-265 828.0 COG0760@1|root,COG0760@2|Bacteria,1MVB3@1224|Proteobacteria,1RMWU@1236|Gammaproteobacteria,1X503@135614|Xanthomonadales 135614|Xanthomonadales M Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation surA - 5.2.1.8 ko:K03771 - - - - ko00000,ko01000,ko03110 - - - Rotamase,Rotamase_3,SurA_N SRR25158195_k127_3003604_0 1429851.X548_01930 0.0 1596.0 COG1452@1|root,COG1452@2|Bacteria,1MUJC@1224|Proteobacteria,1RQEX@1236|Gammaproteobacteria,1X3A5@135614|Xanthomonadales 135614|Xanthomonadales M Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane lptD - - ko:K04744 - - - - ko00000,ko02000 1.B.42.1 - - OstA,OstA_C SRR25158195_k127_3003604_5 391008.Smal_0672 7.51e-196 611.0 COG0123@1|root,COG0123@2|Bacteria,1MU7P@1224|Proteobacteria,1RN8W@1236|Gammaproteobacteria,1X442@135614|Xanthomonadales 135614|Xanthomonadales BQ acetoin utilization protein - - - - - - - - - - - - Hist_deacetyl SRR25158195_k127_3003604_10 391008.Smal_0673 3.085e-104 351.0 COG2096@1|root,COG2096@2|Bacteria,1RDUF@1224|Proteobacteria,1S40D@1236|Gammaproteobacteria,1X50D@135614|Xanthomonadales 135614|Xanthomonadales S adenosyltransferase - - 2.5.1.17 ko:K00798 ko00860,ko01100,map00860,map01100 M00122 R01492,R05220,R07268 RC00533 ko00000,ko00001,ko00002,ko01000 - - - Cob_adeno_trans SRR25158195_k127_3003604_8 522373.Smlt0824 8.938e-122 391.0 2ARZT@1|root,31HBY@2|Bacteria,1RM6G@1224|Proteobacteria,1S71T@1236|Gammaproteobacteria,1X6K3@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3003604_2 391008.Smal_0675 1.617e-233 726.0 COG0654@1|root,COG0654@2|Bacteria,1MU6I@1224|Proteobacteria,1RMS3@1236|Gammaproteobacteria,1X3RQ@135614|Xanthomonadales 135614|Xanthomonadales CH hydroxylase ubiH - - ko:K03185 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R04989,R08773 RC02670 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_3 SRR25158195_k127_3014265_1 522373.Smlt1804 2.546e-82 276.0 2EIBG@1|root,33C2W@2|Bacteria,1NM4U@1224|Proteobacteria,1SIM3@1236|Gammaproteobacteria,1X72G@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3014265_2 522373.Smlt1805 2.302e-52 186.0 COG2924@1|root,COG2924@2|Bacteria,1MZ2V@1224|Proteobacteria,1S964@1236|Gammaproteobacteria,1X7KK@135614|Xanthomonadales 135614|Xanthomonadales CO Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes yggX - - - - - - - - - - - Iron_traffic SRR25158195_k127_3014265_0 391008.Smal_1545 1.36e-218 683.0 COG1194@1|root,COG1194@2|Bacteria,1MUD4@1224|Proteobacteria,1RMBT@1236|Gammaproteobacteria,1X4F8@135614|Xanthomonadales 135614|Xanthomonadales L glycosylase mutY - - ko:K03575 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - EndIII_4Fe-2S,HhH-GPD,NUDIX_4 SRR25158195_k127_3014265_3 522373.Smlt1807 6.731e-40 148.0 COG0552@1|root,COG0552@2|Bacteria,1MUDU@1224|Proteobacteria,1RNIN@1236|Gammaproteobacteria,1X52Y@135614|Xanthomonadales 135614|Xanthomonadales U Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components ftsY - - ko:K03110 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2,3.A.5.7 - - SRP54,SRP54_N SRR25158195_k127_301819_2 522373.Smlt0868 1.765e-29 117.0 COG2326@1|root,COG2326@2|Bacteria,1MVE2@1224|Proteobacteria,1RM9U@1236|Gammaproteobacteria,1X42V@135614|Xanthomonadales 135614|Xanthomonadales H polyphosphate kinase - - - - - - - - - - - - PPK2 SRR25158195_k127_301819_0 1429851.X548_02150 5e-324 997.0 COG3914@1|root,COG4235@1|root,COG3914@2|Bacteria,COG4235@2|Bacteria,1QU3U@1224|Proteobacteria,1T2GT@1236|Gammaproteobacteria,1XD7Y@135614|Xanthomonadales 135614|Xanthomonadales O Glycosyl transferase family 41 - - - - - - - - - - - - Glyco_transf_41,TPR_14 SRR25158195_k127_301819_1 522373.Smlt0870 8.317e-169 530.0 COG0216@1|root,COG0216@2|Bacteria,1MV28@1224|Proteobacteria,1RM7Q@1236|Gammaproteobacteria,1X3HH@135614|Xanthomonadales 135614|Xanthomonadales J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA prfA - - ko:K02835 - - - - ko00000,ko03012 - - - PCRF,RF-1 SRR25158195_k127_3018960_0 522373.Smlt4529 2.147e-176 556.0 COG0667@1|root,COG0667@2|Bacteria,1MV2Y@1224|Proteobacteria,1RQ1X@1236|Gammaproteobacteria,1X4PU@135614|Xanthomonadales 135614|Xanthomonadales C oxidoreductases (related to aryl-alcohol dehydrogenases) - - - - - - - - - - - - Aldo_ket_red SRR25158195_k127_3018960_1 391008.Smal_3890 5.185e-171 539.0 COG4798@1|root,COG4798@2|Bacteria,1NNHX@1224|Proteobacteria,1RN1A@1236|Gammaproteobacteria,1X3E7@135614|Xanthomonadales 135614|Xanthomonadales S Methyltransferase - - - - - - - - - - - - - SRR25158195_k127_3018960_2 391008.Smal_3888 2.096e-65 224.0 COG1187@1|root,COG1187@2|Bacteria,1R9VV@1224|Proteobacteria,1S1ZX@1236|Gammaproteobacteria,1X4NX@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the pseudouridine synthase RsuA family rluE GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.20 ko:K06181 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2 SRR25158195_k127_3029159_2 522373.Smlt2842 2.126e-74 273.0 COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,1RQQ6@1236|Gammaproteobacteria,1XCFE@135614|Xanthomonadales 135614|Xanthomonadales F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides nrdA - 1.17.4.1 ko:K00525 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - Ribonuc_red_lgC,Ribonuc_red_lgN SRR25158195_k127_3029159_3 1429851.X548_10245 0.0004899 49.0 COG0209@1|root,COG0209@2|Bacteria,1MUJ8@1224|Proteobacteria,1RQQ6@1236|Gammaproteobacteria,1XCFE@135614|Xanthomonadales 135614|Xanthomonadales F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides nrdA - 1.17.4.1 ko:K00525 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - Ribonuc_red_lgC,Ribonuc_red_lgN SRR25158195_k127_3029159_1 522373.Smlt2843 1.145e-190 599.0 COG0604@1|root,COG0604@2|Bacteria,1MXCV@1224|Proteobacteria,1RSNU@1236|Gammaproteobacteria,1X4ZY@135614|Xanthomonadales 135614|Xanthomonadales C alcohol dehydrogenase - - - - - - - - - - - - ADH_N,ADH_zinc_N,ADH_zinc_N_2 SRR25158195_k127_3029159_0 391008.Smal_2298 3.983e-220 685.0 COG4206@1|root,COG4206@2|Bacteria,1R47X@1224|Proteobacteria,1T1X7@1236|Gammaproteobacteria,1XD66@135614|Xanthomonadales 135614|Xanthomonadales H TonB dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_3031556_0 448385.sce0177 9.113e-70 248.0 COG0583@1|root,COG0583@2|Bacteria,1N663@1224|Proteobacteria,42ZUV@68525|delta/epsilon subdivisions,2WVFG@28221|Deltaproteobacteria,2YV24@29|Myxococcales 28221|Deltaproteobacteria K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_3031556_1 502025.Hoch_4753 1.977e-12 67.0 COG2203@1|root,COG2204@1|root,COG2203@2|Bacteria,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria 1224|Proteobacteria T Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - - - - - - - - - - GAF_2,HTH_8,Pkinase,Sigma54_activat,TPR_12 SRR25158195_k127_303672_0 522373.Smlt4432 1.5e-323 991.0 COG1629@1|root,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1XA00@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_303672_1 522373.Smlt4431 5.472e-301 923.0 COG0673@1|root,COG0673@2|Bacteria,1PCI1@1224|Proteobacteria,1SXJR@1236|Gammaproteobacteria,1X6BP@135614|Xanthomonadales 135614|Xanthomonadales S Oxidoreductase family, NAD-binding Rossmann fold - - - - - - - - - - - - GFO_IDH_MocA SRR25158195_k127_303672_4 391008.Smal_3808 5.92e-196 613.0 COG0382@1|root,COG0382@2|Bacteria,1MV4Q@1224|Proteobacteria,1RMZ1@1236|Gammaproteobacteria,1X3CT@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate ubiA - 2.5.1.39 ko:K03179 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R05000,R05615 RC00209,RC02895 ko00000,ko00001,ko00002,ko01000,ko01006 - - - UbiA SRR25158195_k127_303672_2 522373.Smlt4420 1.346e-293 902.0 COG2031@1|root,COG2031@2|Bacteria,1MV5A@1224|Proteobacteria,1RMTZ@1236|Gammaproteobacteria,1X47G@135614|Xanthomonadales 135614|Xanthomonadales I COG2031 Short chain fatty acids transporter - - - ko:K02106 ko02020,map02020 - - - ko00000,ko00001 2.A.73.1 - - SCFA_trans SRR25158195_k127_303672_8 522373.Smlt4418 2.643e-98 328.0 COG3863@1|root,COG3863@2|Bacteria,1N0FJ@1224|Proteobacteria,1SFI5@1236|Gammaproteobacteria,1X5QI@135614|Xanthomonadales 135614|Xanthomonadales S Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - - - - - - - - - - Peptidase_C92 SRR25158195_k127_303672_7 391008.Smal_3802 2.937e-113 370.0 COG0346@1|root,COG0346@2|Bacteria,1PCRM@1224|Proteobacteria,1SXWG@1236|Gammaproteobacteria,1X6WW@135614|Xanthomonadales 135614|Xanthomonadales E lactoylglutathione lyase activity - - - - - - - - - - - - - SRR25158195_k127_303672_6 522373.Smlt4413 5e-150 482.0 COG4188@1|root,COG4188@2|Bacteria,1MW2N@1224|Proteobacteria,1SBEQ@1236|Gammaproteobacteria,1X710@135614|Xanthomonadales 135614|Xanthomonadales S Dienelactone hydrolase - - - - - - - - - - - - Hydrolase_4,PAF-AH_p_II SRR25158195_k127_303672_5 522373.Smlt4412 3.404e-150 478.0 COG2207@1|root,COG3708@1|root,COG2207@2|Bacteria,COG3708@2|Bacteria,1MWTF@1224|Proteobacteria,1RQMF@1236|Gammaproteobacteria,1XAK9@135614|Xanthomonadales 135614|Xanthomonadales K Integron-associated effector binding protein - - - ko:K13653 - - - - ko00000,ko03000 - - - GyrI-like,HTH_18 SRR25158195_k127_303672_9 391008.Smal_3790 1.597e-85 288.0 28RRX@1|root,2ZE4F@2|Bacteria,1P6N2@1224|Proteobacteria,1STZV@1236|Gammaproteobacteria,1XBMC@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_303672_3 1429851.X548_17785 2.383e-213 665.0 COG1404@1|root,COG4935@1|root,COG1404@2|Bacteria,COG4935@2|Bacteria,1QU1I@1224|Proteobacteria,1RYP7@1236|Gammaproteobacteria,1X5I5@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the peptidase S8 family - - 3.4.21.121 ko:K20755 - - - - ko00000,ko01000,ko01002 - - - P_proprotein,Peptidase_S8 SRR25158195_k127_3041222_2 522373.Smlt4688 9.767e-198 620.0 COG0861@1|root,COG0861@2|Bacteria,1MUNR@1224|Proteobacteria,1RP9Y@1236|Gammaproteobacteria,1X598@135614|Xanthomonadales 135614|Xanthomonadales P membrane protein terc ygjT - - ko:K05794 - - - - ko00000 - - - TerC SRR25158195_k127_3041222_1 522373.Smlt4687 8.429e-256 792.0 COG1092@1|root,COG1092@2|Bacteria,1MUGB@1224|Proteobacteria,1RN7Z@1236|Gammaproteobacteria,1X40U@135614|Xanthomonadales 135614|Xanthomonadales J Oxidoreductase - - 2.1.1.191 ko:K06969 - - - - ko00000,ko01000,ko03009 - - - Methyltrans_SAM SRR25158195_k127_3041222_0 522373.Smlt4686 4.463e-256 792.0 COG2355@1|root,COG2355@2|Bacteria,1MWEW@1224|Proteobacteria,1RQGU@1236|Gammaproteobacteria,1X5DY@135614|Xanthomonadales 135614|Xanthomonadales E Zn-dependent dipeptidase, microsomal dipeptidase - - 3.4.13.19 ko:K01273 - - - - ko00000,ko00537,ko01000,ko01002,ko04147 - - - Peptidase_M19 SRR25158195_k127_3041222_3 522373.Smlt4685 1.757e-124 400.0 COG0531@1|root,COG0531@2|Bacteria,1MXNJ@1224|Proteobacteria,1SZXE@1236|Gammaproteobacteria,1XBX7@135614|Xanthomonadales 135614|Xanthomonadales E amino acid - - - ko:K03294 - - - - ko00000 2.A.3.2 - - AA_permease_2 SRR25158195_k127_3044194_3 391008.Smal_2048 2.015e-99 327.0 COG1277@1|root,COG1277@2|Bacteria,1MW7Y@1224|Proteobacteria,1RWQC@1236|Gammaproteobacteria,1XA6J@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF3526) - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane_2,DUF3526 SRR25158195_k127_3044194_1 391008.Smal_2049 3.372e-201 644.0 COG1277@1|root,COG1277@2|Bacteria,1PQ4H@1224|Proteobacteria,1S0AQ@1236|Gammaproteobacteria,1X8YG@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF3526) - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - DUF3526 SRR25158195_k127_3044194_2 391008.Smal_2050 1.665e-132 424.0 COG1131@1|root,COG1131@2|Bacteria,1MUX3@1224|Proteobacteria,1RY6M@1236|Gammaproteobacteria,1X78V@135614|Xanthomonadales 135614|Xanthomonadales V abc transporter atp-binding protein - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran SRR25158195_k127_3044194_0 391008.Smal_2051 0.0 1035.0 COG0367@1|root,COG0367@2|Bacteria,1Q8JT@1224|Proteobacteria,1T7TB@1236|Gammaproteobacteria,1X9PR@135614|Xanthomonadales 135614|Xanthomonadales E Asparagine synthase - - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase SRR25158195_k127_3044194_4 391008.Smal_2052 1.15e-28 114.0 2ENRK@1|root,33GCR@2|Bacteria 2|Bacteria S Transglutaminase-like superfamily - - - - - - - - - - - - Transglut_core3 SRR25158195_k127_3045437_0 391008.Smal_3450 7.672e-232 721.0 COG0772@1|root,COG0772@2|Bacteria,1MUK3@1224|Proteobacteria,1RMEJ@1236|Gammaproteobacteria,1X2YE@135614|Xanthomonadales 135614|Xanthomonadales M Peptidoglycan polymerase that is essential for cell wall elongation mrdB - - ko:K05837 - - - - ko00000,ko03036 - - - FTSW_RODA_SPOVE SRR25158195_k127_3045437_1 391008.Smal_3451 1.431e-46 169.0 COG0768@1|root,COG0768@2|Bacteria,1MV8C@1224|Proteobacteria,1RN9H@1236|Gammaproteobacteria,1X374@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes cross-linking of the peptidoglycan cell wall mrdA - 3.4.16.4 ko:K05515 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011 - - - PBP_dimer,Transpeptidase SRR25158195_k127_3048890_1 391008.Smal_3003 2.424e-148 470.0 COG2207@1|root,COG2207@2|Bacteria,1MUWZ@1224|Proteobacteria,1RY53@1236|Gammaproteobacteria,1X54H@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_18,PAS_4 SRR25158195_k127_3048890_0 522373.Smlt3581 3.161e-261 809.0 COG1113@1|root,COG1113@2|Bacteria,1MUPS@1224|Proteobacteria,1RP97@1236|Gammaproteobacteria,1X3F9@135614|Xanthomonadales 135614|Xanthomonadales E Amino acid transporter gabP - - ko:K03293 - - - - ko00000 2.A.3.1 - - AA_permease SRR25158195_k127_3048890_3 522373.Smlt3580 7.687e-84 281.0 COG3865@1|root,COG3865@2|Bacteria,1MZHY@1224|Proteobacteria,1S520@1236|Gammaproteobacteria,1XB5F@135614|Xanthomonadales 135614|Xanthomonadales S 3-demethylubiquinone-9 3-methyltransferase - - - - - - - - - - - - 3-dmu-9_3-mt SRR25158195_k127_3048890_2 522373.Smlt3579 1.131e-119 384.0 COG0403@1|root,COG1003@1|root,COG0403@2|Bacteria,COG1003@2|Bacteria,1MUDP@1224|Proteobacteria,1RND3@1236|Gammaproteobacteria,1X35C@135614|Xanthomonadales 135614|Xanthomonadales E The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor gcvP - 1.4.4.2 ko:K00281,ko:K00283 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 M00532 R01221,R03425 RC00022,RC00929,RC02834,RC02880 ko00000,ko00001,ko00002,ko01000 - - - GDC-P SRR25158195_k127_3050904_0 391008.Smal_0471 1.3e-280 867.0 COG0642@1|root,COG2205@2|Bacteria,1MXH7@1224|Proteobacteria,1RQZW@1236|Gammaproteobacteria 1236|Gammaproteobacteria T Histidine kinase - - - - - - - - - - - - HAMP,HATPase_c,HisKA SRR25158195_k127_3050904_1 391008.Smal_0470 2.44e-146 465.0 COG0745@1|root,COG0745@2|Bacteria,1MY3D@1224|Proteobacteria,1RPKN@1236|Gammaproteobacteria,1X5HV@135614|Xanthomonadales 135614|Xanthomonadales T Transcriptional regulatory protein, C terminal - - - ko:K07659 ko02020,ko02026,map02020,map02026 M00445,M00742,M00743 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_3050904_2 522373.Smlt0593 2.848e-113 367.0 COG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,1S5WI@1236|Gammaproteobacteria,1X6WE@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the MsrB Met sulfoxide reductase family msrB - 1.8.4.12 ko:K07305 - - - - ko00000,ko01000 - - - SelR SRR25158195_k127_3050904_3 391008.Smal_0468 1.25e-90 301.0 COG0526@1|root,COG0785@1|root,COG0526@2|Bacteria,COG0785@2|Bacteria,1MVV0@1224|Proteobacteria,1RP4F@1236|Gammaproteobacteria,1X5JE@135614|Xanthomonadales 135614|Xanthomonadales CO cytochrome c biogenesis protein - - - - - - - - - - - - AhpC-TSA,DsbD,Redoxin SRR25158195_k127_3051216_1 522373.Smlt0837 7.251e-192 601.0 COG0176@1|root,COG0176@2|Bacteria,1MWQ8@1224|Proteobacteria,1RMS0@1236|Gammaproteobacteria,1X3U4@135614|Xanthomonadales 135614|Xanthomonadales G Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway tal GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744 2.2.1.2 ko:K00616 ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230 M00004,M00007 R01827 RC00439,RC00604 ko00000,ko00001,ko00002,ko01000 - - - TAL_FSA SRR25158195_k127_3051216_3 391008.Smal_0686 3.566e-74 256.0 COG0782@1|root,COG0782@2|Bacteria,1MZNY@1224|Proteobacteria,1S8V4@1236|Gammaproteobacteria,1X6XQ@135614|Xanthomonadales 135614|Xanthomonadales K Nucleoside diphosphate kinase rnk - - ko:K06140 - - - - ko00000,ko03000 - - - GreA_GreB,Rnk_N SRR25158195_k127_3051216_2 522373.Smlt0839 3.246e-188 590.0 COG0583@1|root,COG0583@2|Bacteria,1MVA1@1224|Proteobacteria,1RPAJ@1236|Gammaproteobacteria,1X3SU@135614|Xanthomonadales 135614|Xanthomonadales K Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA oxyR - - ko:K04761 ko02026,map02026 - - - ko00000,ko00001,ko03000 - - - HTH_1,LysR_substrate SRR25158195_k127_3051216_0 391008.Smal_0688 1.335e-241 748.0 COG3634@1|root,COG3634@2|Bacteria,1MUKD@1224|Proteobacteria,1RNC7@1236|Gammaproteobacteria,1X4HZ@135614|Xanthomonadales 135614|Xanthomonadales O Alkyl hydroperoxide reductase ahpF - - ko:K03387 - - - - ko00000,ko01000 - - - Pyr_redox_2,Thioredoxin_3 SRR25158195_k127_3051527_0 522373.Smlt2232 3.5e-323 992.0 COG1190@1|root,COG1190@2|Bacteria,1MX1V@1224|Proteobacteria,1RMJN@1236|Gammaproteobacteria,1X3GD@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the class-II aminoacyl-tRNA synthetase family lysS - 6.1.1.6 ko:K04567 ko00970,map00970 M00359,M00360 R03658 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_2,tRNA_anti-codon SRR25158195_k127_3051527_1 391008.Smal_1828 2.04e-194 608.0 COG3437@1|root,COG3437@2|Bacteria,1MUB8@1224|Proteobacteria,1RPH3@1236|Gammaproteobacteria,1X52C@135614|Xanthomonadales 135614|Xanthomonadales T Response regulator containing a CheY-like receiver domain and an HD-GYP domain rpfG - - ko:K13815 ko02020,ko02024,map02020,map02024 M00517 - - ko00000,ko00001,ko00002,ko02022 - - - HD,HD_5,Response_reg SRR25158195_k127_305265_1 391008.Smal_1867 0.0 1233.0 COG3300@1|root,COG5001@1|root,COG3300@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X3PH@135614|Xanthomonadales 135614|Xanthomonadales T GGDEF domain - - 2.7.7.65 ko:K21023 ko02025,map02025 - - - ko00000,ko00001,ko01000 - - - EAL,GGDEF,HAMP,MHYT SRR25158195_k127_305265_2 522373.Smlt2275 0.0 1191.0 COG2936@1|root,COG2936@2|Bacteria,1MVA8@1224|Proteobacteria,1RRWF@1236|Gammaproteobacteria,1X4FU@135614|Xanthomonadales 135614|Xanthomonadales S X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - ko:K06978 - - - - ko00000 - - - PepX_C,Peptidase_S15 SRR25158195_k127_305265_3 522373.Smlt2274 2.472e-227 707.0 COG1377@1|root,COG1377@2|Bacteria,1MUWI@1224|Proteobacteria,1RMHA@1236|Gammaproteobacteria,1X529@135614|Xanthomonadales 135614|Xanthomonadales N Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin flhB - - ko:K02401 ko02040,map02040 - - - ko00000,ko00001,ko02035,ko02044 3.A.6.2 - - Bac_export_2 SRR25158195_k127_305265_0 522373.Smlt2273 0.0 1287.0 COG1298@1|root,COG1298@2|Bacteria,1MUF3@1224|Proteobacteria,1RMSM@1236|Gammaproteobacteria,1X37V@135614|Xanthomonadales 135614|Xanthomonadales N Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin flhA - - ko:K02400 ko02040,map02040 - - - ko00000,ko00001,ko02035,ko02044 3.A.6.2,3.A.6.3 - - FHIPEP SRR25158195_k127_3052718_0 522373.Smlt2970 2.513e-88 297.0 COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,1RRDQ@1236|Gammaproteobacteria,1X3ZH@135614|Xanthomonadales 1236|Gammaproteobacteria V Na -driven multidrug efflux pump - - - - - - - - - - - - MatE SRR25158195_k127_3052718_1 522373.Smlt2971 8.724e-58 203.0 COG3644@1|root,COG3644@2|Bacteria,1RK12@1224|Proteobacteria,1SAPY@1236|Gammaproteobacteria,1X7UE@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized protein conserved in bacteria (DUF2239) - - - ko:K09965 - - - - ko00000 - - - DUF2239 SRR25158195_k127_3056877_0 1429851.X548_00685 4.91e-312 959.0 COG0025@1|root,COG0025@2|Bacteria,1MW5T@1224|Proteobacteria,1RPH6@1236|Gammaproteobacteria,1X4B5@135614|Xanthomonadales 135614|Xanthomonadales P Na H antiporter yjcE - - ko:K03316 - - - - ko00000 2.A.36 - - Na_H_Exchanger SRR25158195_k127_3056877_2 522373.Smlt0554 4.679e-165 524.0 COG3384@1|root,COG3384@2|Bacteria,1MXJZ@1224|Proteobacteria,1RR5P@1236|Gammaproteobacteria,1X3A0@135614|Xanthomonadales 135614|Xanthomonadales S dioxygenase - - - ko:K15777 ko00965,map00965 - R08836 RC00387 ko00000,ko00001,ko01000 - - - LigB SRR25158195_k127_3056877_3 522373.Smlt0553 3.84e-70 239.0 COG2259@1|root,COG2259@2|Bacteria,1N06A@1224|Proteobacteria,1S92U@1236|Gammaproteobacteria,1X8MG@135614|Xanthomonadales 135614|Xanthomonadales S DoxX - - - ko:K15977 - - - - ko00000 - - - DoxX SRR25158195_k127_3056877_1 1429851.X548_00665 2.074e-169 534.0 COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,1RPNX@1236|Gammaproteobacteria,1X60Z@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_3056877_4 522373.Smlt0551 2.665e-37 140.0 COG2199@1|root,COG2200@1|root,COG2202@1|root,COG2199@2|Bacteria,COG2200@2|Bacteria,COG2202@2|Bacteria,1NWNJ@1224|Proteobacteria,1T2J6@1236|Gammaproteobacteria,1X540@135614|Xanthomonadales 135614|Xanthomonadales T Putative diguanylate phosphodiesterase - - - - - - - - - - - - EAL,GGDEF,PAS,PAS_3,PAS_8 SRR25158195_k127_305757_6 1131451.O1K_17433 2.061e-61 213.0 COG3518@1|root,COG3518@2|Bacteria,1RG8W@1224|Proteobacteria,1S50E@1236|Gammaproteobacteria,1X8E9@135614|Xanthomonadales 135614|Xanthomonadales S type VI secretion protein - - - ko:K11897 - M00334 - - ko00000,ko00002,ko02044 - - - GPW_gp25 SRR25158195_k127_305757_2 1131451.O1K_17438 3.748e-92 305.0 COG3157@1|root,COG3157@2|Bacteria,1RBTU@1224|Proteobacteria,1S39K@1236|Gammaproteobacteria,1X662@135614|Xanthomonadales 135614|Xanthomonadales S Type VI secretion system effector, Hcp - - - ko:K11903 ko02025,ko03070,map02025,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 - - - T6SS_HCP SRR25158195_k127_305757_0 1205753.A989_06003 4.01e-297 914.0 COG3517@1|root,COG3517@2|Bacteria,1MU5C@1224|Proteobacteria,1RNP7@1236|Gammaproteobacteria,1X3ID@135614|Xanthomonadales 135614|Xanthomonadales S type VI secretion protein evpB - - ko:K11900 ko02025,map02025 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - VipB SRR25158195_k127_305757_3 1205753.A989_05998 3.808e-92 304.0 COG3516@1|root,COG3516@2|Bacteria,1R9Y7@1224|Proteobacteria,1S48N@1236|Gammaproteobacteria,1X9JD@135614|Xanthomonadales 135614|Xanthomonadales S Type VI secretion system, VipA, VC_A0107 or Hcp2 evpA - - ko:K11901 ko02025,map02025 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - T6SS_VipA SRR25158195_k127_305757_5 383407.XOC_1352 5.145e-65 228.0 COG0457@1|root,COG0457@2|Bacteria,1N58R@1224|Proteobacteria,1SQSK@1236|Gammaproteobacteria,1XAKD@135614|Xanthomonadales 135614|Xanthomonadales S COG0457 FOG TPR repeat - - - - - - - - - - - - - SRR25158195_k127_305757_4 1205753.A989_05988 1.467e-86 291.0 COG3521@1|root,COG3521@2|Bacteria,1RGNB@1224|Proteobacteria,1SIYK@1236|Gammaproteobacteria,1XAWK@135614|Xanthomonadales 135614|Xanthomonadales S Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 - - - ko:K11906 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - T6SS-SciN SRR25158195_k127_305757_1 1131451.O1K_17463 1.094e-149 480.0 COG3522@1|root,COG3522@2|Bacteria,1MXKE@1224|Proteobacteria,1RNCB@1236|Gammaproteobacteria,1X4E5@135614|Xanthomonadales 135614|Xanthomonadales S type VI secretion protein - - - ko:K11893 ko02025,map02025 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - T6SS_VasE SRR25158195_k127_3060989_1 522373.Smlt3417 5.116e-146 465.0 COG0159@1|root,COG0159@2|Bacteria,1MXJV@1224|Proteobacteria,1RMGN@1236|Gammaproteobacteria,1X40W@135614|Xanthomonadales 135614|Xanthomonadales E The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate trpA - 4.2.1.20 ko:K01695 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - Trp_syntA SRR25158195_k127_3060989_2 1118235.CAJH01000004_gene275 2.296e-80 280.0 2A97U@1|root,30YCI@2|Bacteria,1NMTT@1224|Proteobacteria,1T13P@1236|Gammaproteobacteria,1X95A@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3060989_0 522373.Smlt3419 6.826e-192 599.0 COG0133@1|root,COG0133@2|Bacteria,1MUS8@1224|Proteobacteria,1RP4D@1236|Gammaproteobacteria,1X3X4@135614|Xanthomonadales 135614|Xanthomonadales E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine trpB GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 ko:K01696 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - PALP SRR25158195_k127_306879_1 1429851.X548_03470 1.755e-128 415.0 COG1208@1|root,COG1208@2|Bacteria,1R9ZD@1224|Proteobacteria,1S23A@1236|Gammaproteobacteria,1X37W@135614|Xanthomonadales 135614|Xanthomonadales JM Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) - - 2.7.7.99 ko:K00992 ko00520,ko01100,map00520,map01100 - R11025 RC00002 ko00000,ko00001,ko01000 - - - NTP_transferase SRR25158195_k127_306879_0 522373.Smlt1131 7.134e-202 629.0 COG3178@1|root,COG3178@2|Bacteria,1MXCH@1224|Proteobacteria,1RQ1Q@1236|Gammaproteobacteria,1X4P2@135614|Xanthomonadales 135614|Xanthomonadales S Phosphotransferase - - 2.7.1.221 ko:K07102 ko00520,ko01100,map00520,map01100 - R08968,R11024 RC00002,RC00078 ko00000,ko00001,ko01000 - - - APH SRR25158195_k127_3069075_4 522373.Smlt3569 2.646e-172 542.0 COG1807@1|root,COG1807@2|Bacteria,1MXH5@1224|Proteobacteria,1RSQE@1236|Gammaproteobacteria,1X589@135614|Xanthomonadales 135614|Xanthomonadales M Dolichyl-phosphate-mannose-protein mannosyltransferase - - - - - - - - - - - - Glyco_transf_22,PMT_2 SRR25158195_k127_3069075_5 1118235.CAJH01000018_gene1004 8.637e-131 421.0 COG0745@1|root,COG0745@2|Bacteria,1RA00@1224|Proteobacteria,1S23N@1236|Gammaproteobacteria,1X3WF@135614|Xanthomonadales 135614|Xanthomonadales KT Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain raxR - - - - - - - - - - - Response_reg,Trans_reg_C SRR25158195_k127_3069075_1 391008.Smal_2991 4.514e-262 810.0 COG0642@1|root,COG2205@2|Bacteria,1QZQB@1224|Proteobacteria,1T4A8@1236|Gammaproteobacteria,1XD9U@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA SRR25158195_k127_3069075_8 391008.Smal_2990 1.711e-63 222.0 COG0346@1|root,COG0346@2|Bacteria,1RH8Z@1224|Proteobacteria,1SAVZ@1236|Gammaproteobacteria,1XB7X@135614|Xanthomonadales 135614|Xanthomonadales E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase SRR25158195_k127_3069075_2 1429851.X548_13585 1.422e-260 805.0 COG5505@1|root,COG5505@2|Bacteria,1MW87@1224|Proteobacteria,1RQPZ@1236|Gammaproteobacteria,1X4GS@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - DUF819 SRR25158195_k127_3069075_9 391008.Smal_2988 5.101e-46 166.0 COG2879@1|root,COG2879@2|Bacteria,1N6TY@1224|Proteobacteria,1S8ZU@1236|Gammaproteobacteria,1X7MV@135614|Xanthomonadales 135614|Xanthomonadales S Selenoprotein, putative YH67_15000 - - - - - - - - - - - Sel_put SRR25158195_k127_3069075_0 522373.Smlt3562 0.0 1348.0 COG1966@1|root,COG1966@2|Bacteria,1MWF9@1224|Proteobacteria,1RMG4@1236|Gammaproteobacteria,1X3GR@135614|Xanthomonadales 135614|Xanthomonadales T Carbon starvation protein cstA - - ko:K06200 - - - - ko00000 - - - CstA,CstA_5TM SRR25158195_k127_3069075_3 391008.Smal_2986 2.025e-178 563.0 COG1741@1|root,COG1741@2|Bacteria,1MWIP@1224|Proteobacteria,1RNVM@1236|Gammaproteobacteria,1X33N@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the pirin family - - - ko:K06911 - - - - ko00000 - - - Pirin,Pirin_C SRR25158195_k127_3069075_7 391008.Smal_2985 3.709e-82 276.0 2ANZY@1|root,31E10@2|Bacteria,1QBAW@1224|Proteobacteria,1T6VF@1236|Gammaproteobacteria,1X88G@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3069075_6 1429851.X548_13555 1.412e-121 391.0 COG0580@1|root,COG0580@2|Bacteria,1MXTJ@1224|Proteobacteria,1RPKU@1236|Gammaproteobacteria,1X5DT@135614|Xanthomonadales 135614|Xanthomonadales G Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity aqpZ - - ko:K06188 - - - - ko00000,ko02000 1.A.8 - - MIP SRR25158195_k127_3078925_0 391008.Smal_0693 9.397e-237 739.0 COG0477@1|root,COG0477@2|Bacteria,1MWXZ@1224|Proteobacteria,1RW6N@1236|Gammaproteobacteria,1X312@135614|Xanthomonadales 135614|Xanthomonadales EGP Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_3078925_2 522373.Smlt0844 1.748e-164 545.0 COG0583@1|root,COG0583@2|Bacteria,1MW16@1224|Proteobacteria,1RNK2@1236|Gammaproteobacteria,1XCK8@135614|Xanthomonadales 135614|Xanthomonadales K LysR substrate binding domain - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_3078925_1 1429851.X548_02025 2.826e-215 668.0 COG0596@1|root,COG0596@2|Bacteria,1MWW8@1224|Proteobacteria,1RMKF@1236|Gammaproteobacteria,1X32H@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the peptidase S33 family pip - 3.4.11.5 ko:K01259 ko00330,map00330 - R00135 - ko00000,ko00001,ko01000,ko01002 - - - Abhydrolase_1 SRR25158195_k127_3078925_3 522373.Smlt0842 1.227e-152 485.0 COG2890@1|root,COG2890@2|Bacteria,1MXCQ@1224|Proteobacteria,1RNGK@1236|Gammaproteobacteria,1X4AP@135614|Xanthomonadales 135614|Xanthomonadales J Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif prmC GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 ko:K02493 - - R10806 RC00003,RC03279 ko00000,ko01000,ko03012 - - - MTS,Methyltransf_31 SRR25158195_k127_3083405_0 391008.Smal_0524 1.45e-215 674.0 COG0767@1|root,COG0767@2|Bacteria,1MVPN@1224|Proteobacteria,1RYHN@1236|Gammaproteobacteria,1X4B1@135614|Xanthomonadales 135614|Xanthomonadales Q abc transporter, permease - - - ko:K02066 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaE,STAS_2 SRR25158195_k127_3083405_2 391008.Smal_0523 6.233e-166 524.0 COG1127@1|root,COG1127@2|Bacteria,1MUSD@1224|Proteobacteria,1S1PR@1236|Gammaproteobacteria,1X4CU@135614|Xanthomonadales 135614|Xanthomonadales Q abc transporter atp-binding protein - - - ko:K02065 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - ABC_tran SRR25158195_k127_3083405_1 522373.Smlt0660 2.887e-189 592.0 COG1463@1|root,COG1463@2|Bacteria,1MU4B@1224|Proteobacteria,1RY8J@1236|Gammaproteobacteria,1X391@135614|Xanthomonadales 135614|Xanthomonadales Q ABC transporter substrate-binding protein - - - ko:K02067 ko02010,map02010 M00210,M00669,M00670 - - ko00000,ko00001,ko00002,ko02000 3.A.1.27 - - MlaD SRR25158195_k127_3083405_3 1429851.X548_01120 1.257e-16 82.0 COG3218@1|root,COG3218@2|Bacteria,1RI7D@1224|Proteobacteria,1SZ74@1236|Gammaproteobacteria,1XCTK@135614|Xanthomonadales 135614|Xanthomonadales S ABC-type transport auxiliary lipoprotein component - - - ko:K18480 - M00669 - - ko00000,ko00002,ko02000 3.A.1.27.1 - - ABC_trans_aux SRR25158195_k127_3091166_1 391008.Smal_1281 6.422e-258 805.0 COG0475@1|root,COG0475@2|Bacteria,1MVGV@1224|Proteobacteria,1S1ET@1236|Gammaproteobacteria,1X3J6@135614|Xanthomonadales 135614|Xanthomonadales P Sodium hydrogen exchanger - - - - - - - - - - - - Na_H_Exchanger SRR25158195_k127_3091166_0 522373.Smlt1520 0.0 1058.0 COG0367@1|root,COG0367@2|Bacteria,1MW4E@1224|Proteobacteria,1RQ7D@1236|Gammaproteobacteria,1X4DN@135614|Xanthomonadales 135614|Xanthomonadales E converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP asnB - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 SRR25158195_k127_309702_1 522373.Smlt2311 1.173e-79 268.0 COG2063@1|root,COG2063@2|Bacteria,1RDEY@1224|Proteobacteria,1S3XK@1236|Gammaproteobacteria,1X4EI@135614|Xanthomonadales 135614|Xanthomonadales N Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation flgH - - ko:K02393 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - FlgH SRR25158195_k127_309702_0 391008.Smal_1901 3.128e-158 501.0 COG4786@1|root,COG4786@2|Bacteria,1MVMA@1224|Proteobacteria,1RMJ2@1236|Gammaproteobacteria,1X3UP@135614|Xanthomonadales 135614|Xanthomonadales N basal body rod flgG - - ko:K02392 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - Flg_bb_rod,Flg_bbr_C SRR25158195_k127_309702_2 1429851.X548_08375 3.727e-10 60.0 COG4787@1|root,COG4787@2|Bacteria,1NZWQ@1224|Proteobacteria,1RNVX@1236|Gammaproteobacteria,1X5UI@135614|Xanthomonadales 135614|Xanthomonadales N Belongs to the flagella basal body rod proteins family flgF - - ko:K02391 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - Flg_bb_rod,Flg_bbr_C SRR25158195_k127_3102492_0 522373.Smlt2954 9.453e-289 893.0 COG0840@1|root,COG2202@1|root,COG0840@2|Bacteria,COG2202@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X4T8@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein mcpA - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - MCPsignal,PAS_3 SRR25158195_k127_3121814_4 1429851.X548_19310 1.814e-19 92.0 COG3507@1|root,COG3507@2|Bacteria,1MWY2@1224|Proteobacteria,1RR93@1236|Gammaproteobacteria,1X2XR@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 43 family - - 3.2.1.37 ko:K01198 ko00520,ko01100,map00520,map01100 - R01433 RC00467 ko00000,ko00001,ko01000 - GH43 - Glyco_hydro_43 SRR25158195_k127_3121814_0 1429851.X548_19305 6.265e-244 756.0 COG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,1RNAM@1236|Gammaproteobacteria,1X5UP@135614|Xanthomonadales 135614|Xanthomonadales G TRAP-type C4-dicarboxylate transport system, large permease component dctM - - - - - - - - - - - DctM SRR25158195_k127_3121814_3 1429851.X548_19300 3.488e-86 289.0 COG3090@1|root,COG3090@2|Bacteria,1R7QD@1224|Proteobacteria,1SA57@1236|Gammaproteobacteria,1X6MU@135614|Xanthomonadales 135614|Xanthomonadales G TRAP-type C4-dicarboxylate transport system small permease component dctQ - - - - - - - - - - - DctQ SRR25158195_k127_3121814_1 1429851.X548_19295 2.408e-197 619.0 COG1638@1|root,COG1638@2|Bacteria,1MVHC@1224|Proteobacteria,1RPNJ@1236|Gammaproteobacteria,1X4FH@135614|Xanthomonadales 135614|Xanthomonadales G C4-dicarboxylate dctP - - - - - - - - - - - DctP SRR25158195_k127_3121814_2 1429851.X548_19290 1.418e-148 473.0 COG3971@1|root,COG3971@2|Bacteria,1RB58@1224|Proteobacteria,1S408@1236|Gammaproteobacteria,1X4R4@135614|Xanthomonadales 135614|Xanthomonadales Q 2-keto-4-pentenoate hydratase mhpD - 4.2.1.80 ko:K02554 ko00360,ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00360,map00362,map00621,map00622,map01100,map01120,map01220 M00545,M00569 R02601,R04781 RC00750,RC01213 br01602,ko00000,ko00001,ko00002,ko01000 - - - - SRR25158195_k127_3129982_2 1045855.DSC_07715 4.341e-123 399.0 COG0477@1|root,COG2814@2|Bacteria,1MU1I@1224|Proteobacteria,1RNTG@1236|Gammaproteobacteria 1236|Gammaproteobacteria EGP Major facilitator superfamily emrB - - ko:K03446 - M00701 - - ko00000,ko00002,ko02000 2.A.1.3 - - MFS_1 SRR25158195_k127_3129982_1 340.xcc-b100_1830 2.466e-161 518.0 COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,1RMAD@1236|Gammaproteobacteria,1X6D5@135614|Xanthomonadales 135614|Xanthomonadales V Multidrug resistance efflux pump rmrA - - ko:K03543 - M00701 - - ko00000,ko00002,ko02000 8.A.1.1 - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 SRR25158195_k127_3129982_0 522373.Smlt1581 5.479e-237 733.0 COG0687@1|root,COG0687@2|Bacteria,1MUYW@1224|Proteobacteria,1RM7W@1236|Gammaproteobacteria,1X48Q@135614|Xanthomonadales 135614|Xanthomonadales E Required for the activity of the bacterial periplasmic transport system of putrescine potF - - ko:K11073 ko02010,map02010 M00300 - - ko00000,ko00001,ko00002,ko02000 3.A.1.11.2 - - SBP_bac_8 SRR25158195_k127_3130830_0 880073.Calab_3080 4.373e-157 506.0 COG0738@1|root,COG0738@2|Bacteria,2NQUK@2323|unclassified Bacteria 2|Bacteria G Major Facilitator Superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_3130830_1 886293.Sinac_6290 8.424e-48 184.0 COG0583@1|root,COG0583@2|Bacteria,2IXKS@203682|Planctomycetes 203682|Planctomycetes K Hydrogen peroxide-inducible genes activator - - - ko:K04761,ko:K11921 ko02026,map02026 - - - ko00000,ko00001,ko03000 - - - HTH_1,LysR_substrate SRR25158195_k127_3136461_5 1429851.X548_00780 2.476e-37 143.0 COG0637@1|root,COG0637@2|Bacteria,1PUMZ@1224|Proteobacteria,1RNJC@1236|Gammaproteobacteria,1XCM3@135614|Xanthomonadales 135614|Xanthomonadales S HAD-hyrolase-like - - - - - - - - - - - - HAD_2 SRR25158195_k127_3136461_2 1429851.X548_00775 1.13e-141 451.0 COG1187@1|root,COG1187@2|Bacteria,1MU6M@1224|Proteobacteria,1RQA9@1236|Gammaproteobacteria,1X3V6@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the pseudouridine synthase RsuA family rsuA - 5.4.99.19 ko:K06183 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2 SRR25158195_k127_3136461_1 522373.Smlt0573 2.676e-226 704.0 COG2813@1|root,COG2813@2|Bacteria,1MXE9@1224|Proteobacteria,1RQCH@1236|Gammaproteobacteria,1X2XS@135614|Xanthomonadales 135614|Xanthomonadales J Methyltransferase rsmC - 2.1.1.172 ko:K00564 - - R07234 RC00003 ko00000,ko01000,ko03009 - - - MTS SRR25158195_k127_3136461_4 391008.Smal_0449 4.169e-51 181.0 2AP5C@1|root,31E70@2|Bacteria,1QBGI@1224|Proteobacteria,1T71P@1236|Gammaproteobacteria,1X8MI@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3136461_3 391008.Smal_0448 1.789e-52 188.0 2AQMA@1|root,31FUB@2|Bacteria,1QDJW@1224|Proteobacteria,1T9MQ@1236|Gammaproteobacteria,1X8CU@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3247) - - - - - - - - - - - - DUF3247 SRR25158195_k127_3136461_0 391008.Smal_0447 0.0 1264.0 COG0745@1|root,COG5002@1|root,COG0745@2|Bacteria,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,1T1ND@1236|Gammaproteobacteria,1X4HW@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,PAS_4,PAS_8,PAS_9,Response_reg SRR25158195_k127_3149164_1 1429851.X548_16435 1.032e-181 569.0 COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,1RMFE@1236|Gammaproteobacteria,1X43J@135614|Xanthomonadales 135614|Xanthomonadales I Alpha beta hydrolase - - 1.11.1.10 ko:K00433 - - - - ko00000,ko01000 - - - Abhydrolase_1 SRR25158195_k127_3149164_2 1429851.X548_19750 1.222e-49 178.0 2EQBV@1|root,33HXZ@2|Bacteria,1NQCP@1224|Proteobacteria,1SHCH@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_3149164_0 522373.Smlt0157 1.765e-318 978.0 COG4774@1|root,COG4774@2|Bacteria,1QTZK@1224|Proteobacteria,1T2XI@1236|Gammaproteobacteria,1X9YR@135614|Xanthomonadales 135614|Xanthomonadales M TonB-dependent receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_3157867_0 391008.Smal_3000 0.0 1494.0 COG0403@1|root,COG1003@1|root,COG0403@2|Bacteria,COG1003@2|Bacteria,1MUDP@1224|Proteobacteria,1RND3@1236|Gammaproteobacteria,1X35C@135614|Xanthomonadales 135614|Xanthomonadales E The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor gcvP - 1.4.4.2 ko:K00281,ko:K00283 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 M00532 R01221,R03425 RC00022,RC00929,RC02834,RC02880 ko00000,ko00001,ko00002,ko01000 - - - GDC-P SRR25158195_k127_3183695_0 1429851.X548_07145 1.5e-323 991.0 COG1086@1|root,COG1086@2|Bacteria,1MWKY@1224|Proteobacteria,1RNQ2@1236|Gammaproteobacteria,1X4MS@135614|Xanthomonadales 135614|Xanthomonadales GM Multidrug MFS transporter - - - - - - - - - - - - CoA_binding_3,Polysacc_synt_2 SRR25158195_k127_3183695_2 522373.Smlt2049 4.735e-183 574.0 COG1210@1|root,COG1210@2|Bacteria,1MV5F@1224|Proteobacteria,1RNDX@1236|Gammaproteobacteria,1X33Q@135614|Xanthomonadales 135614|Xanthomonadales M UTP-glucose-1-phosphate uridylyltransferase galU - 2.7.7.9 ko:K00963 ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130 M00129,M00361,M00362,M00549 R00289 RC00002 ko00000,ko00001,ko00002,ko01000 - - - NTP_transferase SRR25158195_k127_3183695_1 522373.Smlt2015 1.773e-266 829.0 COG3007@1|root,COG3007@2|Bacteria,1MWCQ@1224|Proteobacteria,1RPPP@1236|Gammaproteobacteria,1X3ER@135614|Xanthomonadales 135614|Xanthomonadales I Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP) fabV - 1.3.1.44,1.3.1.9 ko:K00209 ko00061,ko00650,ko01100,ko01120,ko01200,ko01212,map00061,map00650,map01100,map01120,map01200,map01212 M00083 R01171,R04429,R04724,R04955,R04958,R04961,R04966,R04969 RC00052,RC00076 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Eno-Rase_FAD_bd,Eno-Rase_NADH_b,Enoyl_reductase SRR25158195_k127_3183695_3 391008.Smal_1620 1.761e-120 387.0 COG0745@1|root,COG2199@1|root,COG2200@1|root,COG0745@2|Bacteria,COG2199@2|Bacteria,COG2200@2|Bacteria,1PJCA@1224|Proteobacteria,1RS4H@1236|Gammaproteobacteria,1X47Y@135614|Xanthomonadales 135614|Xanthomonadales T COG2202 FOG PAS PAC domain - - - ko:K21025 ko02025,map02025 - - - ko00000,ko00001 - - - EAL,GGDEF,PAS,PAS_8,PAS_9 SRR25158195_k127_318385_1 391008.Smal_2850 1.787e-120 387.0 COG0135@1|root,COG0135@2|Bacteria,1RA87@1224|Proteobacteria,1S41P@1236|Gammaproteobacteria,1X459@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the TrpF family trpF - 5.3.1.24 ko:K01817 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03509 RC00945 ko00000,ko00001,ko00002,ko01000 - - - PRAI SRR25158195_k127_318385_0 522373.Smlt3420 2.687e-178 560.0 COG0583@1|root,COG0583@2|Bacteria,1QFR1@1224|Proteobacteria,1RMND@1236|Gammaproteobacteria,1X4PB@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator trpI - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_318385_2 391008.Smal_2843 4.616e-91 300.0 COG0133@1|root,COG0133@2|Bacteria,1MUS8@1224|Proteobacteria,1RP4D@1236|Gammaproteobacteria,1X3X4@135614|Xanthomonadales 135614|Xanthomonadales E The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine trpB GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 ko:K01696 ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230 M00023 R00674,R02340,R02722 RC00209,RC00210,RC00700,RC00701,RC02868 ko00000,ko00001,ko00002,ko01000 - - - PALP SRR25158195_k127_3186025_3 522373.Smlt1512 2.268e-109 368.0 COG3121@1|root,COG3121@2|Bacteria,1R4RJ@1224|Proteobacteria,1RY0C@1236|Gammaproteobacteria,1X6JA@135614|Xanthomonadales 135614|Xanthomonadales NU Pilus assembly protein ecpD - - ko:K07346 - - - - ko00000,ko02035,ko02044,ko03110 - - - PapD_N SRR25158195_k127_3186025_5 522373.Smlt1513 7.161e-86 289.0 COG5430@1|root,COG5430@2|Bacteria,1RJPR@1224|Proteobacteria,1S6UX@1236|Gammaproteobacteria,1X86Z@135614|Xanthomonadales 135614|Xanthomonadales S Spore Coat Protein U domain pru - - - - - - - - - - - SCPU SRR25158195_k127_3186025_2 522373.Smlt1513A 5.788e-173 544.0 COG0024@1|root,COG0024@2|Bacteria,1MU99@1224|Proteobacteria,1RMHN@1236|Gammaproteobacteria,1X34H@135614|Xanthomonadales 135614|Xanthomonadales E Methionine aminopeptidase map - 3.4.11.18 ko:K01265 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 SRR25158195_k127_3186025_0 522373.Smlt1514 0.0 1686.0 COG2844@1|root,COG2844@2|Bacteria,1MV54@1224|Proteobacteria,1RN5T@1236|Gammaproteobacteria,1X436@135614|Xanthomonadales 135614|Xanthomonadales O Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen glnD - 2.7.7.59 ko:K00990 ko02020,map02020 - - - ko00000,ko00001,ko01000 - - - ACT,DUF294,GlnD_UR_UTase,HD,NTP_transf_2 SRR25158195_k127_3186025_1 522373.Smlt1515 9.205e-204 636.0 COG2171@1|root,COG2171@2|Bacteria,1MU0Y@1224|Proteobacteria,1RPCS@1236|Gammaproteobacteria,1X35P@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the transferase hexapeptide repeat family dapD - 2.3.1.117 ko:K00674 ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230 M00016 R04365 RC00004,RC01136 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,Hexapep_2,THDPS_N_2 SRR25158195_k127_3186025_4 391008.Smal_1276 5.559e-94 320.0 28Y38@1|root,2ZJYR@2|Bacteria,1RCR4@1224|Proteobacteria,1SB9E@1236|Gammaproteobacteria,1X9KQ@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized conserved protein (COG2071) - - - - - - - - - - - - - SRR25158195_k127_3195278_2 1453501.JELR01000001_gene3272 1.507e-63 226.0 COG0534@1|root,COG0534@2|Bacteria,1MVRV@1224|Proteobacteria,1RRDQ@1236|Gammaproteobacteria,46495@72275|Alteromonadaceae 1236|Gammaproteobacteria V COG0534 Na -driven multidrug efflux pump - - - - - - - - - - - - MatE SRR25158195_k127_3195278_1 1121374.KB891576_gene457 3.851e-98 329.0 COG1082@1|root,COG1082@2|Bacteria,1R4JM@1224|Proteobacteria,1S5N0@1236|Gammaproteobacteria 1236|Gammaproteobacteria G Xylose isomerase domain protein TIM barrel - - - - - - - - - - - - AP_endonuc_2 SRR25158195_k127_3195278_0 247639.MGP2080_12053 4.79e-102 344.0 COG3239@1|root,COG3239@2|Bacteria,1P79B@1224|Proteobacteria,1RNY0@1236|Gammaproteobacteria 1236|Gammaproteobacteria I fatty acid desaturase - - - - - - - - - - - - FA_desaturase SRR25158195_k127_3211569_6 522373.Smlt3851 4.538e-20 91.0 COG0709@1|root,COG0709@2|Bacteria,1MWFG@1224|Proteobacteria,1RQ5Q@1236|Gammaproteobacteria,1X692@135614|Xanthomonadales 135614|Xanthomonadales H Synthesizes selenophosphate from selenide and ATP selD - 2.7.9.3 ko:K01008 ko00450,ko01100,map00450,map01100 - R03595 RC00002,RC02878 ko00000,ko00001,ko01000,ko03016 - - - AIRS,AIRS_C SRR25158195_k127_3211569_0 391008.Smal_3266 0.0 1095.0 COG3276@1|root,COG3276@2|Bacteria,1MWXH@1224|Proteobacteria,1RQJI@1236|Gammaproteobacteria,1X7NN@135614|Xanthomonadales 135614|Xanthomonadales J Elongation factor SelB, winged helix - - - ko:K03833 - - - - ko00000,ko03012 - - - GTP_EFTU,GTP_EFTU_D2,SelB-wing_2,SelB-wing_3 SRR25158195_k127_3211569_2 391008.Smal_3265 1.529e-232 734.0 COG1921@1|root,COG1921@2|Bacteria,1MWXI@1224|Proteobacteria,1RN73@1236|Gammaproteobacteria,1X6U6@135614|Xanthomonadales 135614|Xanthomonadales H Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis selA - 2.9.1.1 ko:K01042 ko00450,ko00970,map00450,map00970 - R08219 RC01246 ko00000,ko00001,ko01000 - - - Se-cys_synth_N,SelA SRR25158195_k127_3211569_4 522373.Smlt3848 3.071e-190 597.0 COG3058@1|root,COG3058@2|Bacteria,1NK06@1224|Proteobacteria,1RQC4@1236|Gammaproteobacteria,1X8NK@135614|Xanthomonadales 135614|Xanthomonadales O Necessary for formate dehydrogenase activity fdhE - - ko:K02380 - - - - ko00000 - - - FdhE SRR25158195_k127_3211569_5 522373.Smlt3846 2.781e-137 437.0 COG2864@1|root,COG2864@2|Bacteria,1MXFQ@1224|Proteobacteria,1RNHH@1236|Gammaproteobacteria,1X789@135614|Xanthomonadales 135614|Xanthomonadales C Prokaryotic cytochrome b561 - - - ko:K00127 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001 - - - Ni_hydr_CYTB SRR25158195_k127_3211569_3 522373.Smlt3845 1.428e-206 643.0 COG0437@1|root,COG0437@2|Bacteria,1MU1B@1224|Proteobacteria,1RNFG@1236|Gammaproteobacteria,1X4ED@135614|Xanthomonadales 135614|Xanthomonadales C Formate dehydrogenase N, transmembrane - - - ko:K00124 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001 - - - Fer4_11,Fer4_7,Form-deh_trans SRR25158195_k127_3211569_1 522373.Smlt3843 4.015e-279 857.0 COG0243@1|root,COG3383@1|root,COG0243@2|Bacteria,COG3383@2|Bacteria,1MW3N@1224|Proteobacteria,1RN6N@1236|Gammaproteobacteria,1XCEY@135614|Xanthomonadales 135614|Xanthomonadales C Molydopterin dinucleotide binding domain - - 1.17.1.9 ko:K00123 ko00630,ko00680,ko01100,ko01120,ko01200,map00630,map00680,map01100,map01120,map01200 - R00519 RC02796 ko00000,ko00001,ko01000 - - - Molybdop_Fe4S4,Molybdopterin,Molydop_binding SRR25158195_k127_3241191_0 522373.Smlt4562 0.0 1412.0 COG4258@1|root,COG4258@2|Bacteria,1MU1E@1224|Proteobacteria,1RMP8@1236|Gammaproteobacteria,1X5EV@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - MMPL SRR25158195_k127_3241191_1 522373.Smlt4561 2.882e-268 828.0 COG0644@1|root,COG0644@2|Bacteria,1MZVI@1224|Proteobacteria,1RMNS@1236|Gammaproteobacteria,1X4V2@135614|Xanthomonadales 135614|Xanthomonadales C COG0644 Dehydrogenases (flavoproteins) - - - - - - - - - - - - Trp_halogenase SRR25158195_k127_3241191_2 1118235.CAJH01000046_gene2936 4.319e-64 228.0 28KUK@1|root,330BN@2|Bacteria,1N9BA@1224|Proteobacteria,1SFFZ@1236|Gammaproteobacteria,1X7WU@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3261) - - - - - - - - - - - - DUF3261 SRR25158195_k127_3246850_1 522373.Smlt0107 5.459e-262 822.0 COG0642@1|root,COG0784@1|root,COG0834@1|root,COG0784@2|Bacteria,COG0834@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1X9VY@135614|Xanthomonadales 135614|Xanthomonadales T PAS fold - - - - - - - - - - - - HATPase_c,HisKA,PAS_3,Response_reg SRR25158195_k127_3246850_0 522373.Smlt0108 1.513e-304 956.0 COG0493@1|root,COG0493@2|Bacteria,1MU2H@1224|Proteobacteria,1RMY7@1236|Gammaproteobacteria,1X468@135614|Xanthomonadales 135614|Xanthomonadales E Glutamate synthase gltD - 1.4.1.13,1.4.1.14 ko:K00266 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - Fer4_20,Pyr_redox_2 SRR25158195_k127_3246850_2 522373.Smlt0109 1.519e-234 726.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1MU7B@1224|Proteobacteria,1RN2W@1236|Gammaproteobacteria,1X465@135614|Xanthomonadales 135614|Xanthomonadales E Glutamate synthase gltB - 1.4.1.13,1.4.1.14 ko:K00265 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase SRR25158195_k127_3247919_0 522373.Smlt3696 1.011e-178 560.0 COG2819@1|root,COG2819@2|Bacteria,1RB1X@1224|Proteobacteria,1RY80@1236|Gammaproteobacteria,1XC1G@135614|Xanthomonadales 135614|Xanthomonadales S Putative esterase - - - ko:K07017 - - - - ko00000 - - - Esterase SRR25158195_k127_3247919_2 522373.Smlt3695 7.745e-77 271.0 COG0784@1|root,COG0784@2|Bacteria,1QG0Q@1224|Proteobacteria,1TDCJ@1236|Gammaproteobacteria,1XAI5@135614|Xanthomonadales 135614|Xanthomonadales T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg SRR25158195_k127_3247919_1 522373.Smlt3694 1.974e-143 459.0 COG1266@1|root,COG1266@2|Bacteria,1R4UU@1224|Proteobacteria,1RNSK@1236|Gammaproteobacteria,1XD3M@135614|Xanthomonadales 135614|Xanthomonadales S CAAX protease self-immunity - - - - - - - - - - - - Abi SRR25158195_k127_3247919_3 391008.Smal_3108 1.964e-53 196.0 COG3809@1|root,COG3809@2|Bacteria,1N6ZY@1224|Proteobacteria,1SEM4@1236|Gammaproteobacteria,1X833@135614|Xanthomonadales 135614|Xanthomonadales S Transcription factor zinc-finger - - - ko:K09981 - - - - ko00000 - - - zf-TFIIB SRR25158195_k127_3248582_4 522373.Smlt3468 3.247e-46 169.0 COG3296@1|root,COG3296@2|Bacteria,1N4ZK@1224|Proteobacteria,1SBG4@1236|Gammaproteobacteria,1X7HM@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4870) - - - ko:K09940 - - - - ko00000 - - - DUF4870 SRR25158195_k127_3248582_2 522373.Smlt3469 4.744e-272 840.0 COG0312@1|root,COG0312@2|Bacteria,1MUVW@1224|Proteobacteria,1RPJF@1236|Gammaproteobacteria,1X4IU@135614|Xanthomonadales 135614|Xanthomonadales S Protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD pmbA - - ko:K03592 - - - - ko00000,ko01002 - - - PmbA_TldD SRR25158195_k127_3248582_3 391008.Smal_2897 7.594e-97 319.0 COG3028@1|root,COG3028@2|Bacteria,1MZ4R@1224|Proteobacteria,1S9JJ@1236|Gammaproteobacteria,1X636@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0307 family - - - ko:K09889 - - - - ko00000,ko03009 - - - DUF615 SRR25158195_k127_3248582_1 391008.Smal_2898 4.441e-309 949.0 COG0312@1|root,COG0312@2|Bacteria,1MUSK@1224|Proteobacteria,1RMA5@1236|Gammaproteobacteria,1X3N2@135614|Xanthomonadales 135614|Xanthomonadales S Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase tldD - - ko:K03568 - - - - ko00000,ko01002 - - - PmbA_TldD SRR25158195_k127_3248582_0 391008.Smal_2899 0.0 2157.0 COG3164@1|root,COG3164@2|Bacteria,1MXWF@1224|Proteobacteria,1RNUK@1236|Gammaproteobacteria,1X37J@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - AsmA_2,DUF3971 SRR25158195_k127_3252441_1 1205753.A989_16973 8.11e-60 211.0 COG0457@1|root,COG0457@2|Bacteria,1R8TH@1224|Proteobacteria,1S1U1@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Tetratricopeptide repeat - - - - - - - - - - - - - SRR25158195_k127_3252441_0 383407.XOC_3449 5.742e-252 788.0 COG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,1SKYM@1236|Gammaproteobacteria,1X7UP@135614|Xanthomonadales 135614|Xanthomonadales M COG3209 Rhs family protein - - - - - - - - - - - - RHS_repeat SRR25158195_k127_3256859_1 522373.Smlt4250 2.852e-63 219.0 COG0671@1|root,COG2453@1|root,COG0671@2|Bacteria,COG2453@2|Bacteria,1QSUD@1224|Proteobacteria,1RQAC@1236|Gammaproteobacteria,1X9DI@135614|Xanthomonadales 135614|Xanthomonadales IT phosphatase - - - - - - - - - - - - DSPc,PAP2_3 SRR25158195_k127_3256859_0 522373.Smlt4251 4.243e-254 785.0 COG2267@1|root,COG2267@2|Bacteria,1MWF5@1224|Proteobacteria,1RNQR@1236|Gammaproteobacteria,1X5NM@135614|Xanthomonadales 135614|Xanthomonadales I Putative methyltransferase - - - - - - - - - - - - Hydrolase_4,Methyltransf_20 SRR25158195_k127_3257092_7 522373.Smlt4598 3.407e-29 116.0 COG0267@1|root,COG0267@2|Bacteria,1N6QV@1224|Proteobacteria,1SCEJ@1236|Gammaproteobacteria,1X87Y@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the bacterial ribosomal protein bL33 family rpmG GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02913 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L33 SRR25158195_k127_3257092_6 383407.XOC_0381 2.561e-45 164.0 COG0227@1|root,COG0227@2|Bacteria,1MZ57@1224|Proteobacteria,1S8UG@1236|Gammaproteobacteria,1X7I6@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the bacterial ribosomal protein bL28 family rpmB GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02902 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L28 SRR25158195_k127_3257092_1 391008.Smal_3953 2.279e-174 549.0 COG0583@1|root,COG0583@2|Bacteria,1MV06@1224|Proteobacteria,1RQIH@1236|Gammaproteobacteria,1X4DD@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_3257092_2 1429851.X548_18650 1.128e-79 269.0 COG0251@1|root,COG0251@2|Bacteria,1RCX5@1224|Proteobacteria,1S4QQ@1236|Gammaproteobacteria,1X704@135614|Xanthomonadales 135614|Xanthomonadales J Endoribonuclease L-PSP - - - - - - - - - - - - Ribonuc_L-PSP SRR25158195_k127_3257092_3 366649.XFF4834R_chr40780 5.13e-68 244.0 2A4IJ@1|root,30T54@2|Bacteria,1PCT4@1224|Proteobacteria,1SXX7@1236|Gammaproteobacteria,1X6YC@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3257092_4 391008.Smal_3955 1.448e-50 181.0 2BTEQ@1|root,32NKX@2|Bacteria,1Q8PJ@1224|Proteobacteria,1T986@1236|Gammaproteobacteria,1XBTI@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3257092_0 522373.Smlt4606 1.603e-221 692.0 COG1538@1|root,COG1538@2|Bacteria,1QIFM@1224|Proteobacteria,1RW1J@1236|Gammaproteobacteria,1X5N4@135614|Xanthomonadales 135614|Xanthomonadales MU Outer membrane efflux protein - - - ko:K15725 - - - - ko00000,ko02000 1.B.17.2.2 - - OEP SRR25158195_k127_3257092_5 391008.Smal_3957 5.56e-49 180.0 COG0845@1|root,COG0845@2|Bacteria,1MX8W@1224|Proteobacteria,1SBF2@1236|Gammaproteobacteria,1X378@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K15727 - - - - ko00000,ko02000 8.A.1.2.1 - - HlyD_D23 SRR25158195_k127_3264142_7 1429851.X548_04160 5.687e-93 308.0 2DZSY@1|root,32VI3@2|Bacteria,1N6Z3@1224|Proteobacteria,1T69G@1236|Gammaproteobacteria,1X8JI@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - bPH_5 SRR25158195_k127_3264142_2 1429851.X548_04165 3.435e-232 729.0 COG1073@1|root,COG1073@2|Bacteria,1R67P@1224|Proteobacteria,1S01G@1236|Gammaproteobacteria,1XBZZ@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3887) - - - - - - - - - - - - DUF3887,Hydrolase_4 SRR25158195_k127_3264142_9 522373.Smlt1261 1.66e-16 89.0 2ADUM@1|root,313KD@2|Bacteria,1QD1K@1224|Proteobacteria,1T8WC@1236|Gammaproteobacteria,1XBBN@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4177) - - - - - - - - - - - - DUF4177 SRR25158195_k127_3264142_8 1429851.X548_04175 3.213e-25 106.0 COG4877@1|root,COG4877@2|Bacteria,1NAUN@1224|Proteobacteria,1SDEU@1236|Gammaproteobacteria,1X83P@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - Arc SRR25158195_k127_3264142_3 391008.Smal_1106 3.355e-165 522.0 COG0330@1|root,COG0330@2|Bacteria,1P8ZI@1224|Proteobacteria,1RUQU@1236|Gammaproteobacteria,1X4NG@135614|Xanthomonadales 135614|Xanthomonadales O membrane - - - - - - - - - - - - Band_7 SRR25158195_k127_3264142_1 391008.Smal_1107 3.308e-249 771.0 COG0027@1|root,COG0027@2|Bacteria,1N3KA@1224|Proteobacteria,1RNTW@1236|Gammaproteobacteria,1X41K@135614|Xanthomonadales 135614|Xanthomonadales F Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate purT - 2.1.2.2 ko:K08289 ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130 M00048 R04325,R04326 RC00026,RC00197,RC01128 ko00000,ko00001,ko00002,ko01000 - - - ATP-grasp,Epimerase SRR25158195_k127_3264142_0 391008.Smal_1108 9.95e-254 784.0 COG4222@1|root,COG4222@2|Bacteria,1R3RI@1224|Proteobacteria,1RQA4@1236|Gammaproteobacteria,1X4A4@135614|Xanthomonadales 135614|Xanthomonadales S endonuclease - - - - - - - - - - - - Exo_endo_phos SRR25158195_k127_3264142_4 391008.Smal_1109 3.625e-165 522.0 COG2935@1|root,COG2935@2|Bacteria,1MW62@1224|Proteobacteria,1RYD7@1236|Gammaproteobacteria,1X3H9@135614|Xanthomonadales 135614|Xanthomonadales O May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate ate GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 2.3.2.29 ko:K21420 - - R11547,R11548 RC00064 ko00000,ko01000 - - - ATE_C,ATE_N SRR25158195_k127_3264142_5 391008.Smal_1110 1.48e-104 341.0 COG5126@1|root,COG5126@2|Bacteria,1NF44@1224|Proteobacteria,1SDJV@1236|Gammaproteobacteria,1X73Z@135614|Xanthomonadales 135614|Xanthomonadales DTZ EF-hand domain pair - - - - - - - - - - - - EF-hand_5 SRR25158195_k127_3264142_6 391008.Smal_1111 5.549e-95 315.0 COG1595@1|root,COG1595@2|Bacteria,1RCMS@1224|Proteobacteria,1S55Z@1236|Gammaproteobacteria,1X59U@135614|Xanthomonadales 135614|Xanthomonadales K RNA polymerase sigma factor - - - - - - - - - - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_3266954_5 391008.Smal_1465 1.577e-54 192.0 COG1534@1|root,COG1534@2|Bacteria,1N8K5@1224|Proteobacteria,1SDIM@1236|Gammaproteobacteria,1X7GX@135614|Xanthomonadales 135614|Xanthomonadales J RNA-binding protein - - - ko:K07574 - - - - ko00000,ko03009 - - - CRS1_YhbY SRR25158195_k127_3266954_3 391008.Smal_1464 7.845e-61 213.0 COG3737@1|root,COG3737@2|Bacteria,1N083@1224|Proteobacteria,1SD91@1236|Gammaproteobacteria,1X6WK@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF498/DUF598) - - - - - - - - - - - - DUF498 SRR25158195_k127_3266954_1 522373.Smlt1724 7.427e-147 468.0 COG1388@1|root,COG4942@1|root,COG1388@2|Bacteria,COG4942@2|Bacteria,1RD24@1224|Proteobacteria,1RR11@1236|Gammaproteobacteria,1X4WB@135614|Xanthomonadales 135614|Xanthomonadales DM membrane nlpD - - ko:K06194 - - - - ko00000 1.A.34.1.2 - - LysM,Peptidase_M23 SRR25158195_k127_3266954_4 767434.Fraau_1870 3.458e-59 214.0 COG1238@1|root,COG1238@2|Bacteria,1MWED@1224|Proteobacteria,1RPT7@1236|Gammaproteobacteria,1X64D@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - SNARE_assoc SRR25158195_k127_3266954_2 391008.Smal_1459 5.277e-136 434.0 COG2518@1|root,COG2518@2|Bacteria,1MXQC@1224|Proteobacteria,1RMHZ@1236|Gammaproteobacteria,1X3XJ@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins pcm GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 ko:K00573 - - - - ko00000,ko01000 - - - PCMT SRR25158195_k127_3266954_0 522373.Smlt1721 4.744e-165 521.0 COG0496@1|root,COG0496@2|Bacteria,1MVHE@1224|Proteobacteria,1RN36@1236|Gammaproteobacteria,1X3JC@135614|Xanthomonadales 135614|Xanthomonadales S Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates surE GO:0003674,GO:0005488,GO:0005515,GO:0042802 3.1.3.5 ko:K03787 ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110 - R00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346 RC00017 ko00000,ko00001,ko01000 - - - SurE SRR25158195_k127_3267503_3 522373.Smlt1423 1.449e-82 278.0 COG0639@1|root,COG0639@2|Bacteria,1QEIM@1224|Proteobacteria,1RZDP@1236|Gammaproteobacteria,1X5SC@135614|Xanthomonadales 135614|Xanthomonadales T Calcineurin-like phosphoesterase - - - - - - - - - - - - Metallophos SRR25158195_k127_3267503_4 1429851.X548_04670 1.509e-69 238.0 COG1733@1|root,COG1733@2|Bacteria,1RIZT@1224|Proteobacteria,1S4TP@1236|Gammaproteobacteria,1XCQV@135614|Xanthomonadales 135614|Xanthomonadales K HxlR-like helix-turn-helix - - - - - - - - - - - - HxlR SRR25158195_k127_3267503_1 391008.Smal_1193 7.314e-187 591.0 COG0477@1|root,COG2814@2|Bacteria,1MVVW@1224|Proteobacteria,1RMXR@1236|Gammaproteobacteria,1X6AM@135614|Xanthomonadales 135614|Xanthomonadales EGP Major facilitator superfamily - - - - - - - - - - - - MFS_1,Sugar_tr SRR25158195_k127_3267503_0 522373.Smlt1426 0.0 1445.0 COG1629@1|root,COG4771@2|Bacteria,1MUC1@1224|Proteobacteria,1RNHR@1236|Gammaproteobacteria,1X5XB@135614|Xanthomonadales 135614|Xanthomonadales M interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space - - - ko:K19611 ko02020,map02020 - - - ko00000,ko00001,ko02000 1.B.14.1.22,1.B.14.1.3,1.B.14.1.5 - - Plug,TonB_dep_Rec SRR25158195_k127_3267503_2 391008.Smal_1196 2.321e-183 575.0 COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,1RMR8@1236|Gammaproteobacteria,1X3TE@135614|Xanthomonadales 135614|Xanthomonadales P cation diffusion facilitator family transporter czcD - - ko:K16264 - - - - ko00000,ko02000 2.A.4.1 - - Cation_efflux SRR25158195_k127_326940_2 391008.Smal_0320 0.0005064 46.0 COG2312@1|root,COG2312@2|Bacteria,1NFQD@1224|Proteobacteria,1SVY3@1236|Gammaproteobacteria,1X6PP@135614|Xanthomonadales 135614|Xanthomonadales S Erythromycin esterase - - - - - - - - - - - - - SRR25158195_k127_326940_0 522373.Smlt0436A 1.015e-183 577.0 COG0109@1|root,COG0109@2|Bacteria,1MW3S@1224|Proteobacteria,1RNHC@1236|Gammaproteobacteria,1X3GV@135614|Xanthomonadales 135614|Xanthomonadales O Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group cyoE GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 ko:K02257 ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714 M00154 R07411 RC01786 ko00000,ko00001,ko00002,ko01000,ko01006,ko03029 - - - UbiA SRR25158195_k127_326940_1 391008.Smal_0318 4.156e-102 333.0 COG1612@1|root,COG1612@2|Bacteria,1MVJ4@1224|Proteobacteria,1RQWB@1236|Gammaproteobacteria,1X432@135614|Xanthomonadales 135614|Xanthomonadales O cytochrome oxidase assembly - - - ko:K02259 ko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714 M00154 R07412 RC00769 ko00000,ko00001,ko00002,ko03029 3.D.4.4 - - COX15-CtaA SRR25158195_k127_3271363_0 522373.Smlt2570 5.811e-225 705.0 COG1055@1|root,COG1055@2|Bacteria,1MUX4@1224|Proteobacteria,1RMAV@1236|Gammaproteobacteria,1X38Q@135614|Xanthomonadales 135614|Xanthomonadales P Involved in arsenical resistance. Thought to form the channel of an arsenite pump - - - ko:K03893 - - - - ko00000,ko02000 2.A.45.1,3.A.4.1 - - ArsB,CitMHS SRR25158195_k127_3271363_1 391008.Smal_1963 5.978e-208 651.0 COG2911@1|root,COG2911@2|Bacteria,1N4HK@1224|Proteobacteria,1SAHK@1236|Gammaproteobacteria,1X9CW@135614|Xanthomonadales 135614|Xanthomonadales S Protein conserved in bacteria - - - - - - - - - - - - - SRR25158195_k127_327151_0 391008.Smal_2272 9.4e-323 991.0 COG1020@1|root,COG3319@1|root,COG1020@2|Bacteria,COG3319@2|Bacteria,1QK4F@1224|Proteobacteria,1RPAG@1236|Gammaproteobacteria,1X3AB@135614|Xanthomonadales 135614|Xanthomonadales Q non-ribosomal peptide synthetase entF - 6.3.2.14 ko:K02364 ko01053,ko01110,ko01130,map01053,map01110,map01130 - R07644 RC00162,RC03046 ko00000,ko00001,ko01000,ko01008 - - - AMP-binding,AMP-binding_C,Condensation,PP-binding,Thioesterase SRR25158195_k127_327151_3 1168059.KB899087_gene3995 6.647e-92 308.0 COG1028@1|root,COG1028@2|Bacteria,1MUD2@1224|Proteobacteria,2TTVT@28211|Alphaproteobacteria,3EZA1@335928|Xanthobacteraceae 28211|Alphaproteobacteria IQ KR domain - - 1.3.1.28 ko:K00216 ko01053,ko01110,ko01130,map01053,map01110,map01130 - R01505 RC00534 ko00000,ko00001,ko01000 - - - adh_short_C2 SRR25158195_k127_327151_4 1429851.X548_10105 6.388e-56 199.0 2B4YM@1|root,31XRK@2|Bacteria,1N851@1224|Proteobacteria,1SFZN@1236|Gammaproteobacteria,1X7H1@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2894) - - - - - - - - - - - - DUF2894 SRR25158195_k127_327151_2 522373.Smlt2808 3.775e-118 386.0 COG1360@1|root,COG1360@2|Bacteria,1MU4S@1224|Proteobacteria,1S14N@1236|Gammaproteobacteria,1X3VP@135614|Xanthomonadales 135614|Xanthomonadales N Flagellar motor protein - - - - - - - - - - - - OmpA SRR25158195_k127_327151_1 391008.Smal_2265 2.017e-255 795.0 COG3206@1|root,COG3206@2|Bacteria,1QZQ5@1224|Proteobacteria,1T4A1@1236|Gammaproteobacteria,1XD9I@135614|Xanthomonadales 135614|Xanthomonadales M Domain of unknown function (DUF802) - - - - - - - - - - - - DUF802 SRR25158195_k127_3272174_1 522373.Smlt1102 1.206e-134 430.0 COG4099@1|root,COG4099@2|Bacteria,1RHBS@1224|Proteobacteria,1T15X@1236|Gammaproteobacteria,1XD38@135614|Xanthomonadales 135614|Xanthomonadales S Esterase PHB depolymerase - - - - - - - - - - - - Peptidase_S9 SRR25158195_k127_3272174_5 391008.Smal_0943 5.049e-08 54.0 COG1943@1|root,COG1943@2|Bacteria,1MZZT@1224|Proteobacteria,1S9JG@1236|Gammaproteobacteria,1X7MY@135614|Xanthomonadales 135614|Xanthomonadales L Transposase and inactivated derivatives - - - - - - - - - - - - Y1_Tnp SRR25158195_k127_3272174_4 391008.Smal_0943 2.852e-21 99.0 COG1943@1|root,COG1943@2|Bacteria,1MZZT@1224|Proteobacteria,1S9JG@1236|Gammaproteobacteria,1X7MY@135614|Xanthomonadales 135614|Xanthomonadales L Transposase and inactivated derivatives - - - - - - - - - - - - Y1_Tnp SRR25158195_k127_3272174_0 522373.Smlt1100 4.105e-195 610.0 COG0540@1|root,COG0540@2|Bacteria,1MWAB@1224|Proteobacteria,1RPSV@1236|Gammaproteobacteria,1X3TW@135614|Xanthomonadales 135614|Xanthomonadales F Belongs to the ATCase OTCase family pyrB GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 ko:K00609 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R01397 RC00064,RC02850 ko00000,ko00001,ko00002,ko01000 - - - OTCace,OTCace_N SRR25158195_k127_3272174_3 1385517.N800_01115 1.261e-66 231.0 COG0816@1|root,COG0816@2|Bacteria,1RDHZ@1224|Proteobacteria,1S96Q@1236|Gammaproteobacteria,1X6P1@135614|Xanthomonadales 135614|Xanthomonadales L Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA - GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - ko:K07447 - - - - ko00000,ko01000 - - - RuvX SRR25158195_k127_3272174_2 522373.Smlt1098 1.393e-105 342.0 COG1678@1|root,COG1678@2|Bacteria,1RCXM@1224|Proteobacteria,1S3YV@1236|Gammaproteobacteria,1X41Z@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the UPF0301 (AlgH) family algH - - ko:K07735 - - - - ko00000,ko03000 - - - DUF179 SRR25158195_k127_3273652_0 522373.Smlt0238 0.0 1062.0 COG4799@1|root,COG4799@2|Bacteria,1MVAX@1224|Proteobacteria,1RNV5@1236|Gammaproteobacteria,1X4BD@135614|Xanthomonadales 135614|Xanthomonadales I Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) - - 6.4.1.4 ko:K01969 ko00280,ko01100,map00280,map01100 M00036 R04138 RC00367,RC00942 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans SRR25158195_k127_3273652_1 391008.Smal_0198 6.647e-103 334.0 COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,1RMMJ@1236|Gammaproteobacteria,1X3IG@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA - - 1.3.8.4 ko:K00253 ko00280,ko01100,map00280,map01100 M00036 R04095 RC00246 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N SRR25158195_k127_3286708_0 522373.Smlt2942 0.0 1530.0 COG1982@1|root,COG1982@2|Bacteria,1MWK4@1224|Proteobacteria,1RMVF@1236|Gammaproteobacteria,1X79A@135614|Xanthomonadales 135614|Xanthomonadales E Orn/Lys/Arg decarboxylase, C-terminal domain - - 4.1.1.19 ko:K01584 ko00330,ko01100,map00330,map01100 M00133 R00566 RC00299 ko00000,ko00001,ko00002,ko01000 - - - OKR_DC_1,OKR_DC_1_C,OKR_DC_1_N SRR25158195_k127_3286708_1 522373.Smlt2943 8.27e-194 606.0 COG0531@1|root,COG0531@2|Bacteria,1MUA2@1224|Proteobacteria,1RRKS@1236|Gammaproteobacteria,1X43D@135614|Xanthomonadales 135614|Xanthomonadales E Amino acid permease - - - ko:K03294,ko:K03759 - - - - ko00000,ko02000 2.A.3.2 - - AA_permease_2 SRR25158195_k127_329634_0 522373.Smlt1440 1.696e-320 983.0 COG2234@1|root,COG2234@2|Bacteria,1MWQ0@1224|Proteobacteria,1S1UU@1236|Gammaproteobacteria,1X439@135614|Xanthomonadales 135614|Xanthomonadales S peptidase - - - - - - - - - - - - Peptidase_M28 SRR25158195_k127_329634_2 522373.Smlt1438 2.519e-22 96.0 COG4452@1|root,COG4452@2|Bacteria,1MVVR@1224|Proteobacteria,1RQRZ@1236|Gammaproteobacteria,1X4YB@135614|Xanthomonadales 135614|Xanthomonadales V Inner membrane protein involved in colicin E2 resistance creD - - ko:K06143 - - - - ko00000 - - - CreD SRR25158195_k127_3297522_0 522373.Smlt0682 0.0 1223.0 COG3325@1|root,COG3325@2|Bacteria,1MWAR@1224|Proteobacteria,1RPNS@1236|Gammaproteobacteria,1X5BZ@135614|Xanthomonadales 135614|Xanthomonadales G chitinase - - 3.2.1.14 ko:K01183 ko00520,ko01100,map00520,map01100 - R01206,R02334 RC00467 ko00000,ko00001,ko01000 - GH18 - Calx-beta,Glyco_hydro_18,fn3 SRR25158195_k127_3303894_1 391008.Smal_0028 3.101e-26 108.0 COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,1RPQC@1236|Gammaproteobacteria,1X4TA@135614|Xanthomonadales 135614|Xanthomonadales S alcohol dehydrogenase - - 1.1.1.1 ko:K13953 ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220 - R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273 ko00000,ko00001,ko01000 - - - ADH_N,ADH_zinc_N SRR25158195_k127_3303894_0 522373.Smlt0106 2.187e-176 559.0 COG1803@1|root,COG1803@2|Bacteria,1RD3D@1224|Proteobacteria,1S3XN@1236|Gammaproteobacteria,1X3KF@135614|Xanthomonadales 135614|Xanthomonadales G methylglyoxal synthase - - - - - - - - - - - - MGS SRR25158195_k127_3303894_2 522373.Smlt0107 2.62e-08 63.0 COG0642@1|root,COG0784@1|root,COG0834@1|root,COG0784@2|Bacteria,COG0834@2|Bacteria,COG2205@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1X9VY@135614|Xanthomonadales 135614|Xanthomonadales T PAS fold - - - - - - - - - - - - HATPase_c,HisKA,PAS_3,Response_reg SRR25158195_k127_330691_2 391008.Smal_3483 3.866e-114 372.0 COG3040@1|root,COG3040@2|Bacteria,1RDAI@1224|Proteobacteria,1S3PW@1236|Gammaproteobacteria,1X7GD@135614|Xanthomonadales 135614|Xanthomonadales M Lipocalin-like domain blc1 - - ko:K03098 - - - - ko00000,ko04147 - - - Lipocalin_2 SRR25158195_k127_330691_0 391008.Smal_3481 0.0 1397.0 COG1505@1|root,COG1505@2|Bacteria,1NZ7N@1224|Proteobacteria,1T1KJ@1236|Gammaproteobacteria,1X478@135614|Xanthomonadales 135614|Xanthomonadales E Prolyl oligopeptidase - - 3.4.21.26 ko:K01322 ko04614,map04614 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N SRR25158195_k127_330691_1 1429851.X548_16055 1.222e-194 608.0 COG0436@1|root,COG0436@2|Bacteria,1MW0Z@1224|Proteobacteria,1RNXA@1236|Gammaproteobacteria,1X6CZ@135614|Xanthomonadales 135614|Xanthomonadales E aminotransferase - - - - - - - - - - - - Aminotran_1_2 SRR25158195_k127_3307077_2 391008.Smal_1648 1.399e-39 149.0 2AQYG@1|root,31G76@2|Bacteria,1QDZK@1224|Proteobacteria,1TA8D@1236|Gammaproteobacteria,1X8IG@135614|Xanthomonadales 135614|Xanthomonadales S Lipopolysaccharide assembly protein A domain - - - ko:K08992 - - - - ko00000 - - - LapA_dom SRR25158195_k127_3307077_0 522373.Smlt2046 4.19e-256 790.0 COG2956@1|root,COG2956@2|Bacteria,1MVDP@1224|Proteobacteria,1RP29@1236|Gammaproteobacteria,1X361@135614|Xanthomonadales 135614|Xanthomonadales G Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane lapB - - ko:K19804 - - - - ko00000 - - - TPR_16,TPR_7 SRR25158195_k127_3307077_1 391008.Smal_1650 1.828e-132 424.0 COG0472@1|root,COG0472@2|Bacteria,1MWYW@1224|Proteobacteria,1RNAP@1236|Gammaproteobacteria,1X4RV@135614|Xanthomonadales 135614|Xanthomonadales M UDP-N-acetylmuramyl pentapeptide phosphotransferase UDP-N-acetylglucosamine-1-phosphate transferase rfb303 - - - - - - - - - - - Glycos_transf_4 SRR25158195_k127_330824_0 522373.Smlt4278 9.616e-264 814.0 COG1473@1|root,COG1473@2|Bacteria,1MUIV@1224|Proteobacteria,1RQAM@1236|Gammaproteobacteria,1X3CG@135614|Xanthomonadales 135614|Xanthomonadales S N-acyl-L-amino acid amidohydrolase amaA - - ko:K01436 - - - - ko00000,ko01000,ko01002 - - - M20_dimer,Peptidase_M20 SRR25158195_k127_330824_1 391008.Smal_3689 4.944e-210 655.0 COG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,1RQ67@1236|Gammaproteobacteria,1X4GP@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family mtrC - - ko:K07799 ko02020,map02020 M00648 - - ko00000,ko00001,ko00002,ko02000 8.A.1 - - Biotin_lipoyl_2,HlyD_D23 SRR25158195_k127_3325630_4 1429851.X548_16185 2.581e-47 170.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,1RMCK@1236|Gammaproteobacteria,1X3II@135614|Xanthomonadales 135614|Xanthomonadales T CheY-like receiver AAA-type ATPase and DNA-binding domains - - - - - - - - - - - - HTH_8,Response_reg,Sigma54_activat SRR25158195_k127_3325630_0 522373.Smlt4106 1.779e-279 865.0 COG5000@1|root,COG5000@2|Bacteria,1MWKZ@1224|Proteobacteria,1RQ8B@1236|Gammaproteobacteria,1X41T@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase styS - - - - - - - - - - - HATPase_c,PAS_8 SRR25158195_k127_3325630_3 882378.RBRH_00396 3.798e-51 187.0 COG0454@1|root,COG0456@2|Bacteria,1MZIE@1224|Proteobacteria,2VXBB@28216|Betaproteobacteria 28216|Betaproteobacteria K Histone acetyltransferase HPA2 and related acetyltransferases - - - - - - - - - - - - Acetyltransf_1,Acetyltransf_7 SRR25158195_k127_3325630_1 522373.Smlt4108 6.932e-273 843.0 COG1207@1|root,COG1207@2|Bacteria,1MUPH@1224|Proteobacteria,1RNKE@1236|Gammaproteobacteria,1X2YF@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain glmU - 2.3.1.157,2.7.7.23 ko:K04042 ko00520,ko01100,ko01130,map00520,map01100,map01130 M00362 R00416,R05332 RC00002,RC00004,RC00166 ko00000,ko00001,ko00002,ko01000 - - - Hexapep,NTP_transf_3 SRR25158195_k127_3325630_2 522373.Smlt4109 4.477e-66 227.0 COG2246@1|root,COG2246@2|Bacteria,1RBFH@1224|Proteobacteria,1T6UH@1236|Gammaproteobacteria,1X7GG@135614|Xanthomonadales 135614|Xanthomonadales S GtrA-like protein - - - - - - - - - - - - GtrA SRR25158195_k127_3328818_5 522373.Smlt3716 7.214e-62 213.0 COG0454@1|root,COG0456@2|Bacteria,1RDH4@1224|Proteobacteria,1SCMT@1236|Gammaproteobacteria,1X66P@135614|Xanthomonadales 135614|Xanthomonadales K acetyltransferase - - 2.3.1.57 ko:K22441 - - - - ko00000,ko01000 - - - Acetyltransf_1,Acetyltransf_10 SRR25158195_k127_3328818_2 1429851.X548_14355 1.135e-126 411.0 COG1075@1|root,COG1075@2|Bacteria,1N2W0@1224|Proteobacteria,1SAMR@1236|Gammaproteobacteria,1X6RA@135614|Xanthomonadales 135614|Xanthomonadales S acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - - - - - - - - - - Abhydrolase_6,Abhydrolase_8 SRR25158195_k127_3328818_1 522373.Smlt3713 3.649e-148 470.0 COG0217@1|root,COG0217@2|Bacteria,1MW3X@1224|Proteobacteria,1RP5N@1236|Gammaproteobacteria,1X40G@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - - - - - - - - - - Transcrip_reg SRR25158195_k127_3328818_4 391008.Smal_3127 7.399e-102 333.0 COG0817@1|root,COG0817@2|Bacteria,1MUJI@1224|Proteobacteria,1RQPJ@1236|Gammaproteobacteria,1X685@135614|Xanthomonadales 135614|Xanthomonadales L Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group ruvC GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 ko:K01159 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvC SRR25158195_k127_3328818_3 522373.Smlt3711 3.838e-117 379.0 COG0632@1|root,COG0632@2|Bacteria,1MWJR@1224|Proteobacteria,1RMET@1236|Gammaproteobacteria,1X373@135614|Xanthomonadales 135614|Xanthomonadales L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB ruvA - 3.6.4.12 ko:K03550 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - HHH_5,RuvA_C,RuvA_N SRR25158195_k127_3328818_0 391008.Smal_3125 0.0 1269.0 COG3158@1|root,COG3158@2|Bacteria,1MUVH@1224|Proteobacteria,1RPM6@1236|Gammaproteobacteria,1X3P7@135614|Xanthomonadales 135614|Xanthomonadales P Transport of potassium into the cell kup GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - ko:K03549 - - - - ko00000,ko02000 2.A.72 - - K_trans SRR25158195_k127_3334251_2 391008.Smal_1392 1.48e-56 199.0 COG3713@1|root,COG3713@2|Bacteria,1MWQN@1224|Proteobacteria,1RQTM@1236|Gammaproteobacteria,1X81B@135614|Xanthomonadales 135614|Xanthomonadales M MltA-interacting protein MipA - - - ko:K07274 - - - - ko00000,ko02000 9.B.99.1 - - MipA SRR25158195_k127_3334251_1 391008.Smal_1393 1.295e-129 415.0 COG0745@1|root,COG0745@2|Bacteria,1NCKY@1224|Proteobacteria,1SJTR@1236|Gammaproteobacteria,1X9VJ@135614|Xanthomonadales 135614|Xanthomonadales T Transcriptional regulatory protein, C terminal - - - - - - - - - - - - Response_reg,Trans_reg_C SRR25158195_k127_3334251_0 1429851.X548_05740 7.71e-273 844.0 COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,1SFV0@1236|Gammaproteobacteria 1236|Gammaproteobacteria T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c SRR25158195_k127_3334251_3 391008.Smal_1395 1.099e-45 169.0 COG0658@1|root,COG2333@1|root,COG0658@2|Bacteria,COG2333@2|Bacteria,1MUKF@1224|Proteobacteria,1RMW6@1236|Gammaproteobacteria,1X47B@135614|Xanthomonadales 135614|Xanthomonadales S DNA internalization-related competence protein ComEC Rec2 comA - - ko:K02238 - M00429 - - ko00000,ko00002,ko02044 3.A.11.1,3.A.11.2 - - Competence,DUF4131,Lactamase_B SRR25158195_k127_3352514_0 1429851.X548_07075 0.0 1418.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X3PQ@135614|Xanthomonadales 135614|Xanthomonadales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family mdtB - - ko:K03296 - - - - ko00000 2.A.6.2 - - ACR_tran SRR25158195_k127_3361298_5 522373.Smlt0379 3.191e-17 80.0 2BI98@1|root,32CER@2|Bacteria,1QQSC@1224|Proteobacteria,1RTFJ@1236|Gammaproteobacteria,1X7F5@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - Phage_holin_3_6 SRR25158195_k127_3361298_4 1429851.X548_20640 1.691e-54 196.0 2ANXS@1|root,31DYN@2|Bacteria,1QB8U@1224|Proteobacteria,1T6T5@1236|Gammaproteobacteria,1X83R@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3361298_1 522373.Smlt0377 1.787e-210 657.0 COG0628@1|root,COG0628@2|Bacteria,1MXXU@1224|Proteobacteria,1RQCM@1236|Gammaproteobacteria,1X4ZR@135614|Xanthomonadales 135614|Xanthomonadales S transporter yhhT - - - - - - - - - - - AI-2E_transport SRR25158195_k127_3361298_2 391008.Smal_0262 2.58e-145 461.0 COG1011@1|root,COG1011@2|Bacteria,1N0I6@1224|Proteobacteria,1RQ41@1236|Gammaproteobacteria,1X45A@135614|Xanthomonadales 135614|Xanthomonadales S Hydrolase - - 3.1.3.102,3.1.3.104 ko:K20862 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R00548,R07280 RC00017 ko00000,ko00001,ko00002,ko01000 - - - HAD_2,Hydrolase SRR25158195_k127_3361298_0 522373.Smlt0373 8.347e-282 867.0 COG0260@1|root,COG0260@2|Bacteria,1MUIN@1224|Proteobacteria,1RNFI@1236|Gammaproteobacteria,1X54A@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the peptidase M17 family pepA2 - 3.4.11.1 ko:K01255 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - Peptidase_M17 SRR25158195_k127_3361298_3 1429851.X548_20615 5.796e-58 203.0 COG0753@1|root,COG0753@2|Bacteria,1MUXZ@1224|Proteobacteria,1RNE7@1236|Gammaproteobacteria,1X4UW@135614|Xanthomonadales 135614|Xanthomonadales C Has an organic peroxide-dependent peroxidase activity srpA - 1.11.1.6 ko:K03781 ko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014 M00532 R00009,R00602,R02670 RC00034,RC00767,RC02141,RC02755 ko00000,ko00001,ko00002,ko01000 - - - Catalase SRR25158195_k127_3373082_5 391008.Smal_1499 6.102e-22 95.0 COG0738@1|root,COG0738@2|Bacteria,1MVR9@1224|Proteobacteria,1RNEI@1236|Gammaproteobacteria,1X2YD@135614|Xanthomonadales 135614|Xanthomonadales G Major facilitator superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_3373082_2 1429851.X548_06250 7.069e-231 716.0 COG1073@1|root,COG1073@2|Bacteria,1MY4C@1224|Proteobacteria,1SIQ3@1236|Gammaproteobacteria,1XCB7@135614|Xanthomonadales 135614|Xanthomonadales S Alpha beta - - - - - - - - - - - - Abhydrolase_6 SRR25158195_k127_3373082_0 391008.Smal_1495 0.0 1530.0 COG4772@1|root,COG4772@2|Bacteria,1NTC4@1224|Proteobacteria,1RPFQ@1236|Gammaproteobacteria,1X4W7@135614|Xanthomonadales 135614|Xanthomonadales M TonB-dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_3373082_1 391008.Smal_1494 0.0 1291.0 COG3511@1|root,COG3511@2|Bacteria,1MWVP@1224|Proteobacteria,1RYB5@1236|Gammaproteobacteria,1X4GT@135614|Xanthomonadales 135614|Xanthomonadales M phospholipase C plcN - 3.1.4.3 ko:K01114 ko00562,ko00564,ko00565,ko01100,ko01110,ko02024,ko04919,map00562,map00564,map00565,map01100,map01110,map02024,map04919 - R01312,R02027,R02052,R03332,R07381 RC00017,RC00425 ko00000,ko00001,ko01000,ko02042 - - - DUF756,Phosphoesterase SRR25158195_k127_3373082_7 454957.IA64_17400 6.219e-05 47.0 COG0582@1|root,COG0582@2|Bacteria,1R6BF@1224|Proteobacteria,1TD7I@1236|Gammaproteobacteria,1XA9V@135614|Xanthomonadales 135614|Xanthomonadales L Integrase - - - - - - - - - - - - Phage_integrase SRR25158195_k127_3373082_4 1429851.X548_06180 5.006e-33 130.0 COG1551@1|root,COG1551@2|Bacteria,1N6PG@1224|Proteobacteria,1SCB4@1236|Gammaproteobacteria,1X83M@135614|Xanthomonadales 135614|Xanthomonadales J Could accelerate the degradation of some genes transcripts potentially through selective RNA binding csrA - - ko:K03563 ko02020,ko02025,ko02026,ko05111,map02020,map02025,map02026,map05111 - - - ko00000,ko00001,ko03019 - - - CsrA SRR25158195_k127_3373082_3 391008.Smal_1478 1.106e-126 407.0 COG0013@1|root,COG0013@2|Bacteria,1MU9A@1224|Proteobacteria,1RMWZ@1236|Gammaproteobacteria,1X3MQ@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain alaS GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 ko:K01872 ko00970,map00970 M00359,M00360 R03038 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - DHHA1,tRNA-synt_2c,tRNA_SAD SRR25158195_k127_3387176_0 522373.Smlt3910 5.544e-314 966.0 COG1292@1|root,COG1292@2|Bacteria,1MV0K@1224|Proteobacteria,1RP3E@1236|Gammaproteobacteria,1X4T6@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the BCCT transporter (TC 2.A.15) family - - - ko:K05020 - - - - ko00000,ko02000 2.A.15.1.1,2.A.15.1.11 - - BCCT SRR25158195_k127_3389756_0 391008.Smal_1557 0.0 1427.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MUWN@1224|Proteobacteria,1RN1E@1236|Gammaproteobacteria,1X417@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec SRR25158195_k127_3389756_1 391008.Smal_1558 1.444e-216 684.0 COG3391@1|root,COG3391@2|Bacteria,1QZQ2@1224|Proteobacteria,1T49T@1236|Gammaproteobacteria,1XD98@135614|Xanthomonadales 135614|Xanthomonadales S amine dehydrogenase activity - - 3.1.3.8 ko:K01083 ko00562,map00562 - R03371 RC00078 ko00000,ko00001,ko01000 - - - NHL SRR25158195_k127_3389756_2 391008.Smal_1559 4.503e-105 344.0 COG1409@1|root,COG3540@1|root,COG1409@2|Bacteria,COG3540@2|Bacteria,1NS3S@1224|Proteobacteria,1RR8K@1236|Gammaproteobacteria,1X3P9@135614|Xanthomonadales 135614|Xanthomonadales P Purple acid Phosphatase, N-terminal domain - - - - - - - - - - - - Metallophos,NAGPA,Pur_ac_phosph_N SRR25158195_k127_3394819_12 522373.Smlt0555 3.08e-11 63.0 COG0025@1|root,COG0025@2|Bacteria,1MW5T@1224|Proteobacteria,1RPH6@1236|Gammaproteobacteria,1X4B5@135614|Xanthomonadales 135614|Xanthomonadales P Na H antiporter yjcE - - ko:K03316 - - - - ko00000 2.A.36 - - Na_H_Exchanger SRR25158195_k127_3394819_10 522373.Smlt0556 4.735e-46 169.0 2CC0C@1|root,32RUG@2|Bacteria,1MZVQ@1224|Proteobacteria,1S8V7@1236|Gammaproteobacteria,1XDI1@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3297) VL23_11275 - - - - - - - - - - - DUF3297 SRR25158195_k127_3394819_3 522373.Smlt0557 3.021e-106 346.0 COG3831@1|root,COG3831@2|Bacteria,1NAJW@1224|Proteobacteria,1SD1V@1236|Gammaproteobacteria,1X6VD@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3394819_11 1429851.X548_00700 3.153e-42 163.0 2DNWH@1|root,32ZJ0@2|Bacteria,1NBJK@1224|Proteobacteria,1SJ5C@1236|Gammaproteobacteria,1X7M8@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF4031) - - - - - - - - - - - - DUF4031 SRR25158195_k127_3394819_8 522373.Smlt0560 5.261e-73 251.0 29ZKJ@1|root,313SS@2|Bacteria,1QD4U@1224|Proteobacteria,1T90R@1236|Gammaproteobacteria,1XBHT@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3394819_1 522373.Smlt0561 9.411e-183 573.0 COG1360@1|root,COG1360@2|Bacteria,1MW1Y@1224|Proteobacteria,1RPQ9@1236|Gammaproteobacteria,1X3U0@135614|Xanthomonadales 135614|Xanthomonadales N Flagellar motor protein motB2 - - ko:K02557 ko02030,ko02040,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1 - - MotB_plug,OmpA SRR25158195_k127_3394819_2 522373.Smlt0562 1.063e-176 558.0 COG1291@1|root,COG1291@2|Bacteria,1MXK3@1224|Proteobacteria,1RNTF@1236|Gammaproteobacteria,1X4NU@135614|Xanthomonadales 135614|Xanthomonadales N With MotB forms the ion channels that couple flagellar rotation to proton sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine motA - - ko:K02556 ko02020,ko02030,ko02040,map02020,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1 - - MotA_ExbB SRR25158195_k127_3394819_5 391008.Smal_0440 8.486e-95 317.0 COG0229@1|root,COG0229@2|Bacteria,1RGWC@1224|Proteobacteria,1S5WI@1236|Gammaproteobacteria,1X681@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the MsrB Met sulfoxide reductase family msrB - 1.8.4.12 ko:K07305 - - - - ko00000,ko01000 - - - SelR SRR25158195_k127_3394819_9 1429851.X548_00725 1.223e-52 190.0 29KNZ@1|root,307KA@2|Bacteria,1QE6T@1224|Proteobacteria,1TANA@1236|Gammaproteobacteria,1X8W5@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3394819_6 522373.Smlt0566 3.679e-92 304.0 COG1522@1|root,COG1522@2|Bacteria,1MX7R@1224|Proteobacteria,1RPGA@1236|Gammaproteobacteria,1X5XH@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional lrp - - ko:K03719 - - - - ko00000,ko03000,ko03036 - - - AsnC_trans_reg,HTH_24,HTH_AsnC-type SRR25158195_k127_3394819_0 522373.Smlt0567 5.569e-279 858.0 COG0665@1|root,COG0665@2|Bacteria,1MVIZ@1224|Proteobacteria,1RQ50@1236|Gammaproteobacteria,1X45Z@135614|Xanthomonadales 135614|Xanthomonadales E Oxidative deamination of D-amino acids dadA GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0008718,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016638,GO:0019478,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046144,GO:0046395,GO:0046416,GO:0046436,GO:0055114,GO:0055130,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.4.5.1 ko:K00285 ko00360,map00360 - R01374,R09493 RC00006,RC00025 ko00000,ko00001,ko01000 - - - DAO SRR25158195_k127_3394819_7 1283300.ATXB01000001_gene2375 2.245e-81 284.0 COG0787@1|root,COG0787@2|Bacteria,1MV0Q@1224|Proteobacteria,1RM8U@1236|Gammaproteobacteria,1XEEP@135618|Methylococcales 135618|Methylococcales M Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids - - 5.1.1.1 ko:K01775 ko00473,ko01100,ko01502,map00473,map01100,map01502 - R00401 RC00285 ko00000,ko00001,ko01000,ko01011 - - - Ala_racemase_C,Ala_racemase_N SRR25158195_k127_3394819_4 1429851.X548_00750 1.92e-97 320.0 2E78G@1|root,331S4@2|Bacteria,1N78C@1224|Proteobacteria,1SCCF@1236|Gammaproteobacteria,1XCZW@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3016) - - - - - - - - - - - - DUF3016 SRR25158195_k127_3399889_1 522373.Smlt1693 7.008e-151 477.0 COG0069@1|root,COG0069@2|Bacteria,1MU7B@1224|Proteobacteria,1RP1C@1236|Gammaproteobacteria,1X3KT@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the glutamate synthase family - - - - - - - - - - - - Glu_synthase SRR25158195_k127_3399889_2 522373.Smlt1694 3.453e-82 275.0 COG0454@1|root,COG0456@2|Bacteria,1RI07@1224|Proteobacteria,1S7S4@1236|Gammaproteobacteria,1X8AP@135614|Xanthomonadales 135614|Xanthomonadales K Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_10 SRR25158195_k127_3399889_0 391008.Smal_1434 1.373e-244 759.0 COG2081@1|root,COG2081@2|Bacteria,1MUGC@1224|Proteobacteria,1RRAS@1236|Gammaproteobacteria,1X2ZW@135614|Xanthomonadales 135614|Xanthomonadales S HI0933-like protein - - - ko:K07007 - - - - ko00000 - - - HI0933_like SRR25158195_k127_3399889_3 312153.Pnuc_0365 7.023e-35 139.0 COG0545@1|root,COG0545@2|Bacteria,1RDA1@1224|Proteobacteria,2VSIG@28216|Betaproteobacteria,1K7PD@119060|Burkholderiaceae 28216|Betaproteobacteria G peptidyl-prolyl cis-trans isomerase fkpA - 5.2.1.8 ko:K01802,ko:K03772 - - - - ko00000,ko01000,ko03110 - - - FKBP_C SRR25158195_k127_3406500_6 1429851.X548_04945 3.419e-14 74.0 COG0652@1|root,COG0652@2|Bacteria,1QCY4@1224|Proteobacteria,1RRUQ@1236|Gammaproteobacteria,1XCF4@135614|Xanthomonadales 135614|Xanthomonadales M Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - 5.2.1.8 ko:K01802 - - - - ko00000,ko01000 - - - Pro_isomerase SRR25158195_k127_3406500_4 391008.Smal_1244 1.616e-69 237.0 COG1695@1|root,COG1695@2|Bacteria,1NJSY@1224|Proteobacteria,1SG6R@1236|Gammaproteobacteria,1X6UG@135614|Xanthomonadales 135614|Xanthomonadales K PadR family transcriptional regulator - - - ko:K10947 - - - - ko00000,ko03000 - - - PadR SRR25158195_k127_3406500_1 522373.Smlt1485 3.193e-185 582.0 COG4709@1|root,COG4709@2|Bacteria,1NX5K@1224|Proteobacteria,1SPS6@1236|Gammaproteobacteria,1X34I@135614|Xanthomonadales 135614|Xanthomonadales S Putative sensor - - - - - - - - - - - - Sensor SRR25158195_k127_3406500_0 522373.Smlt1486 3.685e-287 883.0 COG4553@1|root,COG4553@2|Bacteria,1MVUH@1224|Proteobacteria,1RQYF@1236|Gammaproteobacteria,1X39N@135614|Xanthomonadales 135614|Xanthomonadales I de-polymerase phaZ - 3.1.1.75 ko:K05973 ko00650,map00650 - R05118 - ko00000,ko00001,ko01000 - - - PHB_depo_C SRR25158195_k127_3406500_2 522373.Smlt1487 1.809e-119 398.0 COG0500@1|root,COG0500@2|Bacteria,1R947@1224|Proteobacteria,1SUF1@1236|Gammaproteobacteria,1X4RG@135614|Xanthomonadales 135614|Xanthomonadales Q Methyltransferase - - - - - - - - - - - - Methyltransf_12,Methyltransf_23,Methyltransf_25 SRR25158195_k127_3406500_3 522373.Smlt1488 5.664e-82 295.0 COG1981@1|root,COG1981@2|Bacteria,1RHGS@1224|Proteobacteria,1S5XY@1236|Gammaproteobacteria,1X6CA@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - ko:K08973 - - - - ko00000 - - - UPF0093 SRR25158195_k127_3406500_5 1429851.X548_01475 6.486e-39 160.0 COG3468@1|root,COG3468@2|Bacteria,1R8WV@1224|Proteobacteria,1RPXJ@1236|Gammaproteobacteria 1236|Gammaproteobacteria MU outer membrane autotransporter barrel domain protein - - - - - - - - - - - - Autotransporter,Pertactin SRR25158195_k127_340666_5 1219375.CM002139_gene4066 1.424e-38 145.0 COG4969@1|root,COG4969@2|Bacteria,1N71K@1224|Proteobacteria,1SCYD@1236|Gammaproteobacteria,1X76E@135614|Xanthomonadales 135614|Xanthomonadales NU Domain of unknown function (DUF4845) - - - - - - - - - - - - DUF4845 SRR25158195_k127_340666_3 522373.Smlt3549 1.621e-130 418.0 COG0571@1|root,COG0571@2|Bacteria,1MUQ6@1224|Proteobacteria,1RN0C@1236|Gammaproteobacteria,1X3C3@135614|Xanthomonadales 135614|Xanthomonadales J Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism rnc GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 ko:K03685 ko03008,ko05205,map03008,map05205 - - - ko00000,ko00001,ko01000,ko03009,ko03019,ko03036 - - - Ribonucleas_3_3,dsrm SRR25158195_k127_340666_0 522373.Smlt3548 4.795e-185 582.0 COG1159@1|root,COG1159@2|Bacteria,1MUKT@1224|Proteobacteria,1RN3A@1236|Gammaproteobacteria,1X34P@135614|Xanthomonadales 135614|Xanthomonadales S An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism era - - ko:K03595 - - - - ko00000,ko03009,ko03029 - - - KH_2,MMR_HSR1 SRR25158195_k127_340666_2 522373.Smlt3547 4.872e-137 437.0 COG1381@1|root,COG1381@2|Bacteria,1RHIC@1224|Proteobacteria,1RN8Y@1236|Gammaproteobacteria,1X30R@135614|Xanthomonadales 135614|Xanthomonadales L Involved in DNA repair and RecF pathway recombination recO - - ko:K03584 ko03440,map03440 - - - ko00000,ko00001,ko03400 - - - RecO_C,RecO_N SRR25158195_k127_340666_1 522373.Smlt3542 2.079e-141 458.0 COG0745@1|root,COG0745@2|Bacteria,1RHTT@1224|Proteobacteria,1T1MZ@1236|Gammaproteobacteria,1X6CU@135614|Xanthomonadales 135614|Xanthomonadales T COG0784 FOG CheY-like receiver - - - - - - - - - - - - Hpt,Response_reg SRR25158195_k127_340666_4 1429851.X548_13490 6.904e-50 198.0 COG2265@1|root,COG2265@2|Bacteria,1MV3A@1224|Proteobacteria,1RN1D@1236|Gammaproteobacteria,1X4IP@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA rlmD - 2.1.1.190 ko:K03215 - - - - ko00000,ko01000,ko03009 - - - TRAM,tRNA_U5-meth_tr SRR25158195_k127_3415142_2 391008.Smal_1607 7.748e-125 400.0 COG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,1RMUR@1236|Gammaproteobacteria,1X3UY@135614|Xanthomonadales 135614|Xanthomonadales V ABC transporter draA - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran SRR25158195_k127_3415142_0 391008.Smal_1605 9.465e-211 658.0 COG0077@1|root,COG0287@1|root,COG0077@2|Bacteria,COG0287@2|Bacteria,1MVUT@1224|Proteobacteria,1RQB3@1236|Gammaproteobacteria,1X33J@135614|Xanthomonadales 135614|Xanthomonadales E prephenate dehydrogenase tyrA - 1.3.1.12 ko:K04517 ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230 M00025 R01728 RC00125 ko00000,ko00001,ko00002,ko01000 - - - ACT,PDH SRR25158195_k127_3415142_1 522373.Smlt1997 6.165e-189 591.0 COG2240@1|root,COG2240@2|Bacteria,1MVC9@1224|Proteobacteria,1S3NK@1236|Gammaproteobacteria,1X4IX@135614|Xanthomonadales 135614|Xanthomonadales H Pyridoxal kinase pdxY - 2.7.1.35 ko:K00868 ko00750,ko01100,map00750,map01100 - R00174,R01909,R02493 RC00002,RC00017 ko00000,ko00001,ko01000 - - - Phos_pyr_kin SRR25158195_k127_3424508_0 522373.Smlt1729 1.712e-229 712.0 COG0465@1|root,COG0465@2|Bacteria,1MU6J@1224|Proteobacteria,1RME8@1236|Gammaproteobacteria,1X3EG@135614|Xanthomonadales 135614|Xanthomonadales O Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins ftsH - - ko:K03798 - M00742 - - ko00000,ko00002,ko01000,ko01002,ko03110 - - - AAA,FtsH_ext,Peptidase_M41 SRR25158195_k127_3424508_1 1429851.X548_06115 1.13e-125 403.0 COG0293@1|root,COG0293@2|Bacteria,1MW1C@1224|Proteobacteria,1RN5M@1236|Gammaproteobacteria,1X4P6@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit ftsJ - 2.1.1.166 ko:K02427 - - - - ko00000,ko01000,ko03009 - - - FtsJ SRR25158195_k127_3444149_3 522373.Smlt1841 1.105e-160 507.0 COG1075@1|root,COG1075@2|Bacteria,1NYAK@1224|Proteobacteria,1RZ8D@1236|Gammaproteobacteria,1X5M2@135614|Xanthomonadales 135614|Xanthomonadales S Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_6,PGAP1 SRR25158195_k127_3444149_2 522373.Smlt1840 5.358e-171 541.0 COG0693@1|root,COG0693@2|Bacteria,1R41H@1224|Proteobacteria,1RR9T@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Protein and nucleotide deglycase that catalyzes the deglycation of the Maillard adducts formed between amino groups of proteins or nucleotides and reactive carbonyl groups of glyoxals. Thus, functions as a protein deglycase that repairs methylglyoxal- and glyoxal-glycated proteins, and releases repaired proteins and lactate or glycolate, respectively. Deglycates cysteine, arginine and lysine residues in proteins, and thus reactivates these proteins by reversing glycation by glyoxals. Acts on early glycation intermediates (hemithioacetals and aminocarbinols), preventing the formation of Schiff bases and advanced glycation endproducts (AGE). Also functions as a nucleotide deglycase able to repair glycated guanine in the free nucleotide pool (GTP, GDP, GMP, dGTP) and in DNA and RNA. Is thus involved in a major nucleotide repair system named guanine glycation repair (GG repair), dedicated to reversing methylglyoxal and glyoxal damage via nucleotide sanitization and direct nucleic acid repair. Plays an important role in protecting cells from carbonyl stress hchA GO:0003674,GO:0003700,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0006139,GO:0006259,GO:0006281,GO:0006355,GO:0006464,GO:0006517,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009100,GO:0009268,GO:0009438,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010447,GO:0010468,GO:0010556,GO:0016053,GO:0016070,GO:0016829,GO:0016835,GO:0016836,GO:0019172,GO:0019219,GO:0019222,GO:0019243,GO:0019249,GO:0019538,GO:0019752,GO:0030091,GO:0031323,GO:0031326,GO:0032787,GO:0033554,GO:0034641,GO:0036211,GO:0036524,GO:0036525,GO:0042180,GO:0042182,GO:0042221,GO:0042245,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0046394,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051595,GO:0051596,GO:0051716,GO:0060255,GO:0061727,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901135,GO:1901360,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901654,GO:1901700,GO:1903506,GO:2000112,GO:2001141 3.5.1.124,4.2.1.130 ko:K05523 ko00620,ko01120,map00620,map01120 - R09796 RC02658 ko00000,ko00001,ko01000,ko01002 - - - DJ-1_PfpI SRR25158195_k127_3444149_4 391008.Smal_1575 7.165e-118 383.0 COG2197@1|root,COG2197@2|Bacteria,1NH4V@1224|Proteobacteria,1S4VC@1236|Gammaproteobacteria 1236|Gammaproteobacteria K Transcriptional regulator, LuxR family - - - ko:K07782 ko02020,ko02024,ko02026,map02020,map02024,map02026 - - - ko00000,ko00001,ko03000 - - - Autoind_bind,GerE SRR25158195_k127_3444149_1 522373.Smlt1836 1.431e-178 561.0 COG3568@1|root,COG3568@2|Bacteria,1PPNP@1224|Proteobacteria,1S9D7@1236|Gammaproteobacteria,1X46I@135614|Xanthomonadales 135614|Xanthomonadales S Metal-dependent hydrolase - - - - - - - - - - - - Exo_endo_phos SRR25158195_k127_3444149_0 391008.Smal_1570 1.006e-278 860.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,1RN5K@1236|Gammaproteobacteria,1X4JU@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane efflux protein oprN4 - - ko:K18300 - M00641 - - ko00000,ko00002,ko01504,ko02000 1.B.17 - - OEP SRR25158195_k127_3444149_5 266265.Bxe_A2677 2.071e-51 189.0 COG1028@1|root,COG1028@2|Bacteria,1MW4W@1224|Proteobacteria,2VNXP@28216|Betaproteobacteria,1K4Y8@119060|Burkholderiaceae 28216|Betaproteobacteria IQ Belongs to the short-chain dehydrogenases reductases (SDR) family - - - - - - - - - - - - adh_short SRR25158195_k127_3444343_1 1163407.UU7_08028 1.064e-21 96.0 COG3170@1|root,COG3170@2|Bacteria,1QVRS@1224|Proteobacteria,1T2I9@1236|Gammaproteobacteria,1X7CD@135614|Xanthomonadales 135614|Xanthomonadales NU Capsule biosynthesis GfcC - - - - - - - - - - - - Caps_synth_GfcC SRR25158195_k127_3444343_0 1045855.DSC_07630 6.251e-205 653.0 COG3170@1|root,COG3170@2|Bacteria,1QVRT@1224|Proteobacteria,1T2IA@1236|Gammaproteobacteria,1X481@135614|Xanthomonadales 135614|Xanthomonadales NU Exopolysaccharide biosynthesis protein YbjH - - - - - - - - - - - - YjbH SRR25158195_k127_3445319_0 391008.Smal_0274 2.645e-110 358.0 2C5U9@1|root,2Z9NJ@2|Bacteria,1R8VZ@1224|Proteobacteria,1RWKX@1236|Gammaproteobacteria,1X5HZ@135614|Xanthomonadales 135614|Xanthomonadales S Bacterial protein of unknown function (Gcw_chp) - - - - - - - - - - - - Gcw_chp SRR25158195_k127_3445319_1 1429851.X548_20690 4.114e-68 233.0 COG0859@1|root,COG0859@2|Bacteria,1MZGQ@1224|Proteobacteria,1S7TT@1236|Gammaproteobacteria,1X734@135614|Xanthomonadales 135614|Xanthomonadales M PFAM glycosyl transferase family 9 - - - - - - - - - - - - - SRR25158195_k127_3445319_2 1429851.X548_20685 7.985e-46 166.0 COG2197@1|root,COG2197@2|Bacteria,1MW84@1224|Proteobacteria,1RNK3@1236|Gammaproteobacteria 1236|Gammaproteobacteria K Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions - - - ko:K07687 ko02020,ko02026,map02020,map02026 M00474 - - ko00000,ko00001,ko00002,ko02022 - - - GerE,Response_reg SRR25158195_k127_3446187_1 272134.KB731324_gene1544 3.192e-20 104.0 COG0419@1|root,COG0419@2|Bacteria 2|Bacteria L ATPase involved in DNA repair - - 2.1.1.80,3.1.1.61 ko:K13924 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035 - - - AAA_13,AAA_23,Kelch_1,Kelch_4,Peptidase_C14,Tubulin_2,WD40 SRR25158195_k127_3446187_0 330214.NIDE2957 4.091e-81 296.0 COG0222@1|root,COG0222@2|Bacteria 330214.NIDE2957|- J mitochondrial gene expression - - - - - - - - - - - - - SRR25158195_k127_3450325_0 522373.Smlt0164 1.697e-256 811.0 COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,1RNGU@1236|Gammaproteobacteria,1X3P8@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation yfcY - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N SRR25158195_k127_3450325_1 522373.Smlt0163 5.525e-180 565.0 29KGK@1|root,307DX@2|Bacteria,1P3RW@1224|Proteobacteria,1RWAR@1236|Gammaproteobacteria,1X318@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3450325_2 391008.Smal_0125 1.28e-10 61.0 COG2032@1|root,COG2032@2|Bacteria,1RGV4@1224|Proteobacteria,1S6KW@1236|Gammaproteobacteria,1XC3P@135614|Xanthomonadales 135614|Xanthomonadales P Destroys radicals which are normally produced within the cells and which are toxic to biological systems - - 1.15.1.1 ko:K04565 ko04146,ko04213,ko05014,ko05016,ko05020,map04146,map04213,map05014,map05016,map05020 - - - ko00000,ko00001,ko01000 - - - Sod_Cu SRR25158195_k127_3452483_1 391008.Smal_2395 1.178e-72 250.0 COG2911@1|root,COG2911@2|Bacteria,1NHQB@1224|Proteobacteria,1SVEG@1236|Gammaproteobacteria,1XD9M@135614|Xanthomonadales 135614|Xanthomonadales S Porin subfamily - - - - - - - - - - - - Porin_2 SRR25158195_k127_3452483_0 522373.Smlt2946 4.625e-145 460.0 COG1651@1|root,COG1651@2|Bacteria,1NEFD@1224|Proteobacteria,1RQAW@1236|Gammaproteobacteria,1X3JN@135614|Xanthomonadales 135614|Xanthomonadales O Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process dsbG - - ko:K03805 - - - - ko00000,ko03110 - - - Thioredoxin_2 SRR25158195_k127_3463703_7 522373.Smlt4503 2.527e-14 73.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1P6E1@1224|Proteobacteria,1RPRK@1236|Gammaproteobacteria,1X2XM@135614|Xanthomonadales 135614|Xanthomonadales E peptidase - - 3.4.14.5 ko:K01278 ko04974,map04974 - - - ko00000,ko00001,ko01000,ko01002,ko04090,ko04147 - - - DPPIV_N,PD40,Peptidase_S9 SRR25158195_k127_3463703_2 1429851.X548_18180 1.229e-147 468.0 COG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,1RMF7@1236|Gammaproteobacteria,1X3GH@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the GST superfamily gst7 - - ko:K11209 - - - - ko00000,ko01000 - - - GST_C,GST_C_2,GST_N SRR25158195_k127_3463703_4 391008.Smal_3867 1.849e-106 348.0 COG2862@1|root,COG2862@2|Bacteria,1RANN@1224|Proteobacteria,1S2DE@1236|Gammaproteobacteria,1X4Z5@135614|Xanthomonadales 135614|Xanthomonadales S UPF0114 protein - - - - - - - - - - - - UPF0114 SRR25158195_k127_3463703_1 391008.Smal_3868 3.225e-171 545.0 COG0810@1|root,COG0810@2|Bacteria,1NH16@1224|Proteobacteria,1S2FT@1236|Gammaproteobacteria,1X522@135614|Xanthomonadales 135614|Xanthomonadales M Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C SRR25158195_k127_3463703_5 522373.Smlt4507 9.402e-37 145.0 2EIFX@1|root,33C79@2|Bacteria,1NGF9@1224|Proteobacteria,1SGCI@1236|Gammaproteobacteria,1XBEE@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3463703_3 391008.Smal_3870 5.003e-118 384.0 COG2207@1|root,COG2207@2|Bacteria,1MWCA@1224|Proteobacteria,1S31C@1236|Gammaproteobacteria,1X6SW@135614|Xanthomonadales 135614|Xanthomonadales K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - AraC_binding,HTH_18 SRR25158195_k127_3463703_8 1282360.ABAC460_18290 1.581e-05 48.0 2C4H4@1|root,32R9Y@2|Bacteria,1N9DV@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_3463703_0 391008.Smal_3872 2.613e-226 705.0 COG1668@1|root,COG1668@2|Bacteria,1R3RG@1224|Proteobacteria,1RQT1@1236|Gammaproteobacteria,1X3GM@135614|Xanthomonadales 135614|Xanthomonadales CP permease natB - - ko:K09696 ko02010,ko02020,map02010,map02020 M00253 - - ko00000,ko00001,ko00002,ko02000 3.A.1.115 - - ABC2_membrane_2,ABC2_membrane_3 SRR25158195_k127_3463703_6 522373.Smlt4511 9.09e-34 130.0 COG4555@1|root,COG4555@2|Bacteria,1QU2T@1224|Proteobacteria,1RY2V@1236|Gammaproteobacteria,1X307@135614|Xanthomonadales 135614|Xanthomonadales CP abc transporter atp-binding protein - - 3.6.3.7 ko:K09697 ko02010,ko02020,map02010,map02020 M00253 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.115 - - ABC_tran SRR25158195_k127_3468331_2 391008.Smal_1327 2.65e-131 420.0 COG2733@1|root,COG2733@2|Bacteria,1MX3G@1224|Proteobacteria,1RNR7@1236|Gammaproteobacteria,1X31F@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - DUF445 SRR25158195_k127_3468331_1 522373.Smlt1569 1.136e-158 504.0 COG2963@1|root,COG2963@2|Bacteria,1PCWW@1224|Proteobacteria,1SUXH@1236|Gammaproteobacteria,1X4H9@135614|Xanthomonadales 135614|Xanthomonadales L transposase activity - - - - - - - - - - - - - SRR25158195_k127_3468331_0 522373.Smlt1570 1.095e-280 865.0 COG0161@1|root,COG0161@2|Bacteria,1MU2N@1224|Proteobacteria,1RP0C@1236|Gammaproteobacteria,1X3N0@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - 2.6.1.18 ko:K00822 ko00280,ko00410,ko00640,ko01100,map00280,map00410,map00640,map01100 - R00907,R04187 RC00008,RC00062,RC00160 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_3 SRR25158195_k127_3468331_3 391008.Smal_1330 7.715e-69 235.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X3DG@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the aldehyde dehydrogenase family - - 1.2.1.39,1.2.1.99 ko:K00146,ko:K09472 ko00330,ko00360,ko00643,ko01100,ko01120,map00330,map00360,map00643,map01100,map01120 M00136 R02536,R07417,R07418 RC00080 ko00000,ko00001,ko00002,ko01000 - - - Aldedh SRR25158195_k127_3469985_3 383407.XOC_3671 2.451e-37 141.0 COG1773@1|root,COG1773@2|Bacteria,1N731@1224|Proteobacteria,1SC8Q@1236|Gammaproteobacteria,1X88Q@135614|Xanthomonadales 135614|Xanthomonadales C rubredoxin rubA - - - - - - - - - - - Rubredoxin SRR25158195_k127_3469985_1 391008.Smal_3287 9.633e-115 371.0 COG0352@1|root,COG0352@2|Bacteria,1RDSU@1224|Proteobacteria,1S6QS@1236|Gammaproteobacteria,1X6BT@135614|Xanthomonadales 135614|Xanthomonadales H Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) thiE GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 ko:K00788 ko00730,ko01100,map00730,map01100 M00127 R03223,R10712 RC00224,RC03255,RC03397 ko00000,ko00001,ko00002,ko01000 - - - TMP-TENI SRR25158195_k127_3469985_0 522373.Smlt3873 1.279e-270 834.0 COG0001@1|root,COG0001@2|Bacteria,1MUY5@1224|Proteobacteria,1RM7N@1236|Gammaproteobacteria,1X3C9@135614|Xanthomonadales 135614|Xanthomonadales H Glutamate-1-semialdehyde aminotransferase hemL - 5.4.3.8 ko:K01845 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R02272 RC00677 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_3 SRR25158195_k127_3469985_2 391008.Smal_3289 1.606e-73 247.0 COG3241@1|root,COG3241@2|Bacteria,1RHV2@1224|Proteobacteria,1S6H8@1236|Gammaproteobacteria,1X705@135614|Xanthomonadales 135614|Xanthomonadales C Transfers electrons from cytochrome c551 to cytochrome oxidase azu - - - - - - - - - - - Copper-bind SRR25158195_k127_3476674_1 522373.Smlt3394 2.704e-307 944.0 COG1009@1|root,COG1009@2|Bacteria,1MW2M@1224|Proteobacteria,1RNKN@1236|Gammaproteobacteria,1X2Y0@135614|Xanthomonadales 135614|Xanthomonadales CP NADH ubiquinone oxidoreductase subunit nuoL - 1.6.5.3 ko:K00341 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M,Proton_antipo_N SRR25158195_k127_3476674_0 522373.Smlt3393 7.984e-320 980.0 COG1008@1|root,COG1008@2|Bacteria,1MV7V@1224|Proteobacteria,1RNI4@1236|Gammaproteobacteria,1X3SW@135614|Xanthomonadales 135614|Xanthomonadales C NADH ubiquinone oxidoreductase subunit nuoM - 1.6.5.3 ko:K00342 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M SRR25158195_k127_3476674_2 522373.Smlt3392 7.679e-78 261.0 COG1007@1|root,COG1007@2|Bacteria,1MV56@1224|Proteobacteria,1RPJB@1236|Gammaproteobacteria,1X3KC@135614|Xanthomonadales 135614|Xanthomonadales C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoN - 1.6.5.3 ko:K00343 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Proton_antipo_M SRR25158195_k127_3494275_2 522373.Smlt2928 2.453e-15 75.0 COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,1RQA8@1236|Gammaproteobacteria,1X3V7@135614|Xanthomonadales 135614|Xanthomonadales L DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase dnaE2 - 2.7.7.7 ko:K14162 - - - - ko00000,ko01000,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon SRR25158195_k127_3494275_1 522373.Smlt2929 2.303e-94 312.0 2DMEE@1|root,32QYB@2|Bacteria,1P9AQ@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_3494275_0 391008.Smal_2382 6.722e-164 518.0 COG1167@1|root,COG1167@2|Bacteria,1NT8Z@1224|Proteobacteria,1RNFA@1236|Gammaproteobacteria,1X48R@135614|Xanthomonadales 135614|Xanthomonadales K Bacterial regulatory proteins, gntR family - - - - - - - - - - - - Aminotran_1_2,GntR SRR25158195_k127_3497050_3 522373.Smlt2614 7.407e-09 57.0 COG0346@1|root,COG0346@2|Bacteria,1RCGK@1224|Proteobacteria,1S37J@1236|Gammaproteobacteria,1X6CQ@135614|Xanthomonadales 135614|Xanthomonadales E bleomycin resistance protein - - - - - - - - - - - - Glyoxalase SRR25158195_k127_3497050_2 522373.Smlt2615 1.302e-73 250.0 COG2207@1|root,COG2207@2|Bacteria,1RD0U@1224|Proteobacteria,1SNMM@1236|Gammaproteobacteria,1XCH4@135614|Xanthomonadales 135614|Xanthomonadales K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 SRR25158195_k127_3497050_1 216591.BCAL2056 7.958e-89 312.0 COG2084@1|root,COG2084@2|Bacteria,1NV8Y@1224|Proteobacteria,2W1IY@28216|Betaproteobacteria,1K2SC@119060|Burkholderiaceae 28216|Betaproteobacteria I NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - 1.1.1.31 ko:K00020 ko00280,ko01100,map00280,map01100 - R05066 RC00099 ko00000,ko00001,ko01000 - - - NAD_binding_11,NAD_binding_2 SRR25158195_k127_3497050_0 391008.Smal_2106 1.834e-233 725.0 COG4260@1|root,COG4260@2|Bacteria,1MXTD@1224|Proteobacteria,1S1VS@1236|Gammaproteobacteria,1X3R3@135614|Xanthomonadales 135614|Xanthomonadales S virion core protein (lumpy skin disease virus) - - - - - - - - - - - - Band_7_1 SRR25158195_k127_3497050_4 522373.Smlt2629 2.578e-06 49.0 COG1996@1|root,COG1996@2|Bacteria,1QZQ4@1224|Proteobacteria,1T49X@1236|Gammaproteobacteria,1XD9A@135614|Xanthomonadales 135614|Xanthomonadales K Psort location Cytoplasmic, score - - - - - - - - - - - - - SRR25158195_k127_3501076_2 1429851.X548_08840 7.311e-55 196.0 COG2194@1|root,COG2194@2|Bacteria,1MWS7@1224|Proteobacteria,1RMNG@1236|Gammaproteobacteria,1X3D7@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - 2.7.8.43 ko:K03760 ko01503,map01503 M00722 R11555,R11556,R11557 RC00002 ko00000,ko00001,ko00002,ko01000,ko01005 - - - DUF1705,Sulfatase SRR25158195_k127_3501076_3 391008.Smal_2262 6.314e-52 187.0 COG0818@1|root,COG0818@2|Bacteria,1MZ3Q@1224|Proteobacteria,1S92I@1236|Gammaproteobacteria 1236|Gammaproteobacteria M Recycling of diacylglycerol produced during the turnover of membrane phospholipid dgkA - 2.7.1.107 ko:K00901 ko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231 - R02240 RC00002,RC00017 ko00000,ko00001,ko01000 - - - DAGK_prokar SRR25158195_k127_3501076_0 1429851.X548_08830 1.202e-186 591.0 COG0642@1|root,COG0642@2|Bacteria,1Q9PW@1224|Proteobacteria 1224|Proteobacteria T Histidine kinase colS - - - - - - - - - - - HATPase_c,HisKA SRR25158195_k127_3501076_1 522373.Smlt2801 6.661e-126 407.0 COG0745@1|root,COG0745@2|Bacteria,1RA00@1224|Proteobacteria,1S23N@1236|Gammaproteobacteria,1X41P@135614|Xanthomonadales 1236|Gammaproteobacteria KT XRE family transcriptional regulator - - - - - - - - - - - - Response_reg,Trans_reg_C SRR25158195_k127_3501076_4 1231391.AMZF01000019_gene2020 4.036e-44 162.0 COG0494@1|root,COG0494@2|Bacteria,1QU7P@1224|Proteobacteria,2VXUI@28216|Betaproteobacteria 28216|Betaproteobacteria L Belongs to the Nudix hydrolase family - - - - - - - - - - - - NUDIX SRR25158195_k127_3504746_1 391008.Smal_1442 6.908e-125 401.0 COG1392@1|root,COG1392@2|Bacteria,1PKQF@1224|Proteobacteria,1SMFE@1236|Gammaproteobacteria,1X412@135614|Xanthomonadales 135614|Xanthomonadales P Pit accessory protein VL23_21310 - - ko:K07220 - - - - ko00000 - - - PhoU_div SRR25158195_k127_3504746_0 391008.Smal_1441 1.297e-263 815.0 COG1253@1|root,COG1253@2|Bacteria,1MV3P@1224|Proteobacteria,1T1MS@1236|Gammaproteobacteria,1X425@135614|Xanthomonadales 135614|Xanthomonadales P Hemolysins and related proteins containing CBS domains tlyC - - ko:K03699 - - - - ko00000,ko02042 - - - CBS,CorC_HlyC,DUF21 SRR25158195_k127_3504746_2 190486.XAC1708 1.739e-72 253.0 COG3932@1|root,COG3932@2|Bacteria,1MZD5@1224|Proteobacteria,1SER8@1236|Gammaproteobacteria,1X6ME@135614|Xanthomonadales 135614|Xanthomonadales S exopolysaccharide synthesis exoD - - - - - - - - - - - ExoD SRR25158195_k127_3507664_0 391008.Smal_1636 2.048e-214 670.0 COG0845@1|root,COG0845@2|Bacteria,1MX0G@1224|Proteobacteria,1RN0S@1236|Gammaproteobacteria,1X433@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - HlyD_D23 SRR25158195_k127_3507664_2 522373.Smlt2032 2.555e-64 223.0 COG2863@1|root,COG2863@2|Bacteria,1MZU1@1224|Proteobacteria,1SBJR@1236|Gammaproteobacteria,1X7P5@135614|Xanthomonadales 135614|Xanthomonadales C cytochrome - - - - - - - - - - - - Cytochrom_C SRR25158195_k127_3507664_1 522373.Smlt2031 1.396e-88 293.0 COG2863@1|root,COG2863@2|Bacteria,1N7W9@1224|Proteobacteria,1S90Z@1236|Gammaproteobacteria,1X7MX@135614|Xanthomonadales 135614|Xanthomonadales C Cytochrome - - - - - - - - - - - - Cytochrom_C SRR25158195_k127_3507664_3 1429851.X548_07055 1.991e-25 105.0 COG0488@1|root,COG0488@2|Bacteria,1MU37@1224|Proteobacteria,1RPCU@1236|Gammaproteobacteria,1X49W@135614|Xanthomonadales 135614|Xanthomonadales S mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth uup - - ko:K15738 - - - - ko00000,ko02000 3.A.1.120.6 - - ABC_tran,ABC_tran_CTD,ABC_tran_Xtn SRR25158195_k127_3513266_0 391008.Smal_1226 0.0 1466.0 COG5001@1|root,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X3Q4@135614|Xanthomonadales 135614|Xanthomonadales T GGDEF domain - - - - - - - - - - - - EAL,GGDEF,PAS,PAS_3,PAS_4,PAS_9 SRR25158195_k127_3513266_1 522373.Smlt1463 3.401e-313 966.0 COG2199@1|root,COG3706@2|Bacteria,1N9PI@1224|Proteobacteria,1SZ78@1236|Gammaproteobacteria,1XCTP@135614|Xanthomonadales 135614|Xanthomonadales T 7TM diverse intracellular signalling - - - - - - - - - - - - 7TMR-DISM_7TM,GGDEF SRR25158195_k127_3513266_2 522373.Smlt1464 6.622e-101 332.0 COG1187@1|root,COG1187@2|Bacteria,1MXQE@1224|Proteobacteria,1RMC7@1236|Gammaproteobacteria,1X338@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the pseudouridine synthase RsuA family rluF - 5.4.99.21 ko:K06182 - - - - ko00000,ko01000,ko03009 - - - PseudoU_synth_2,S4 SRR25158195_k127_3515068_2 391008.Smal_1768 1.326e-123 402.0 COG3142@1|root,COG3142@2|Bacteria,1MV5W@1224|Proteobacteria,1RMC1@1236|Gammaproteobacteria,1XCQ4@135614|Xanthomonadales 135614|Xanthomonadales P Participates in the control of copper homeostasis cutC - - ko:K06201 - - - - ko00000 - - - CutC SRR25158195_k127_3515068_0 522373.Smlt2173 1.179e-203 648.0 COG1446@1|root,COG1446@2|Bacteria,1MWFC@1224|Proteobacteria,1RNUR@1236|Gammaproteobacteria,1X33I@135614|Xanthomonadales 135614|Xanthomonadales E asparaginase aga - 3.5.1.26 ko:K01444 ko00511,ko04142,map00511,map04142 - - - ko00000,ko00001,ko01000 - - - Asparaginase_2,TAT_signal SRR25158195_k127_3515068_1 522373.Smlt2172 3.023e-152 482.0 COG0837@1|root,COG0837@2|Bacteria,1MVFI@1224|Proteobacteria,1RNUY@1236|Gammaproteobacteria,1X2YT@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the bacterial glucokinase family - - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Glucokinase SRR25158195_k127_3515421_3 522373.Smlt4575 7.374e-119 381.0 COG1271@1|root,COG1271@2|Bacteria,1MV60@1224|Proteobacteria,1RN2U@1236|Gammaproteobacteria,1X4FJ@135614|Xanthomonadales 135614|Xanthomonadales C oxidase, subunit - - 1.10.3.14 ko:K00425 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00153 R11325 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - Cyt_bd_oxida_I SRR25158195_k127_3515421_1 522373.Smlt4574 2.76e-209 653.0 COG1294@1|root,COG1294@2|Bacteria,1MURP@1224|Proteobacteria,1RN0N@1236|Gammaproteobacteria,1X35A@135614|Xanthomonadales 135614|Xanthomonadales C oxidase, subunit II cioB - 1.10.3.14 ko:K00426 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00153 R11325 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - Cyt_bd_oxida_II SRR25158195_k127_3515421_4 1385517.N800_04890 1.36e-84 286.0 2DNSX@1|root,32YZ0@2|Bacteria,1NDSG@1224|Proteobacteria,1T3PH@1236|Gammaproteobacteria,1X6KB@135614|Xanthomonadales 135614|Xanthomonadales S Beta-ketoacyl synthase, N-terminal domain - - - - - - - - - - - - Ketoacyl-synt_2 SRR25158195_k127_3515421_2 391008.Smal_3924 4.611e-153 493.0 COG0204@1|root,COG0204@2|Bacteria,1RDN7@1224|Proteobacteria,1S4Z5@1236|Gammaproteobacteria,1X4GD@135614|Xanthomonadales 135614|Xanthomonadales I Phosphate acyltransferases - - - - - - - - - - - - Acyltransferase SRR25158195_k127_3515421_7 1479235.KK366039_gene2568 9.743e-26 111.0 COG0236@1|root,COG0236@2|Bacteria,1N6RU@1224|Proteobacteria,1SCW1@1236|Gammaproteobacteria,1XQ82@135619|Oceanospirillales 135619|Oceanospirillales IQ Phosphopantetheine attachment site - - - ko:K02078 - - - - ko00000,ko00001 - - - PP-binding SRR25158195_k127_3515421_6 391008.Smal_3922 7.109e-44 165.0 COG0236@1|root,COG0236@2|Bacteria,1N7Q1@1224|Proteobacteria,1SC83@1236|Gammaproteobacteria,1X86B@135614|Xanthomonadales 135614|Xanthomonadales IQ Carrier of the growing fatty acid chain in fatty acid biosynthesis VM57_19245 - - ko:K02078 - - - - ko00000,ko00001 - - - PP-binding SRR25158195_k127_3515421_5 1123253.AUBD01000001_gene1756 2.742e-51 189.0 COG4648@1|root,COG4648@2|Bacteria,1N0PK@1224|Proteobacteria,1S9TC@1236|Gammaproteobacteria,1X6XH@135614|Xanthomonadales 135614|Xanthomonadales I Membrane - - - - - - - - - - - - - SRR25158195_k127_3515421_0 391008.Smal_3920 5.434e-252 781.0 COG0318@1|root,COG0764@1|root,COG0318@2|Bacteria,COG0764@2|Bacteria,1MXPB@1224|Proteobacteria,1RRD5@1236|Gammaproteobacteria,1X4JQ@135614|Xanthomonadales 135614|Xanthomonadales IQ Acyl-coenzyme A synthetases AMP-(fatty) acid ligases - - - - - - - - - - - - AMP-binding,AMP-binding_C SRR25158195_k127_3516242_2 522373.Smlt0360 4.659e-157 496.0 COG0577@1|root,COG0577@2|Bacteria,1MX7X@1224|Proteobacteria,1RRH7@1236|Gammaproteobacteria,1X430@135614|Xanthomonadales 135614|Xanthomonadales V MacB-like periplasmic core domain - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD SRR25158195_k127_3516242_1 522373.Smlt0358 1.071e-177 563.0 COG2962@1|root,COG2962@2|Bacteria,1MX5G@1224|Proteobacteria,1RMAC@1236|Gammaproteobacteria,1X3PF@135614|Xanthomonadales 135614|Xanthomonadales S EamA-like transporter family rarD - - ko:K05786 - - - - ko00000,ko02000 2.A.7.7 - - EamA SRR25158195_k127_3516242_0 1429851.X548_20560 6.617e-183 574.0 COG0697@1|root,COG0697@2|Bacteria,1MXX1@1224|Proteobacteria,1RPRZ@1236|Gammaproteobacteria,1X4Y9@135614|Xanthomonadales 135614|Xanthomonadales EG Permeases of the drug metabolite transporter (DMT) superfamily yedA - - - - - - - - - - - EamA SRR25158195_k127_352743_0 391008.Smal_3055 0.0 1235.0 COG2982@1|root,COG2982@2|Bacteria,1MUAN@1224|Proteobacteria,1RNZM@1236|Gammaproteobacteria,1X4Z4@135614|Xanthomonadales 135614|Xanthomonadales M protein involved in outer membrane biogenesis asmA - - ko:K07290 - - - - ko00000 9.B.121 - - AsmA SRR25158195_k127_352743_4 522373.Smlt3638 9.317e-119 395.0 COG1272@1|root,COG1272@2|Bacteria,1PGRH@1224|Proteobacteria,1RR4R@1236|Gammaproteobacteria,1X3JH@135614|Xanthomonadales 135614|Xanthomonadales S hemolysin III hly3 - - ko:K11068 - - - - ko00000,ko02042 - - - HlyIII SRR25158195_k127_352743_1 522373.Smlt3637 0.0 1061.0 COG4108@1|root,COG4108@2|Bacteria,1MU7X@1224|Proteobacteria,1RMFT@1236|Gammaproteobacteria,1X453@135614|Xanthomonadales 135614|Xanthomonadales J Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP prfC GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016150,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - ko:K02837 - - - - ko00000,ko03012 - - - GTP_EFTU,GTP_EFTU_D2,RF3_C SRR25158195_k127_352743_2 522373.Smlt3636 7.119e-153 495.0 COG0739@1|root,COG0739@2|Bacteria,1N19D@1224|Proteobacteria,1S8IP@1236|Gammaproteobacteria,1XBXP@135614|Xanthomonadales 135614|Xanthomonadales M Peptidase family M23 - - - - - - - - - - - - Peptidase_M23 SRR25158195_k127_352743_3 522373.Smlt3635 5.057e-131 423.0 COG2021@1|root,COG2021@2|Bacteria,1MVJV@1224|Proteobacteria,1RXCB@1236|Gammaproteobacteria,1X4WJ@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the AB hydrolase superfamily. MetX family metXS GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.31 ko:K00641 ko00270,ko01100,ko01130,map00270,map01100,map01130 - R01776 RC00004,RC00041 ko00000,ko00001,ko01000 - - - Abhydrolase_1 SRR25158195_k127_3535195_0 1429851.X548_14330 2.604e-208 650.0 COG2255@1|root,COG2255@2|Bacteria,1MU38@1224|Proteobacteria,1RNWY@1236|Gammaproteobacteria,1X2XF@135614|Xanthomonadales 135614|Xanthomonadales L The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing ruvB - 3.6.4.12 ko:K03551 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - RuvB_C,RuvB_N SRR25158195_k127_3535195_3 1094184.KWO_0111390 3.043e-62 217.0 COG0824@1|root,COG0824@2|Bacteria,1MZH6@1224|Proteobacteria,1S93F@1236|Gammaproteobacteria,1X6W5@135614|Xanthomonadales 135614|Xanthomonadales S Acyl-CoA thioesterase - - - ko:K07107 - - - - ko00000,ko01000 - - - 4HBT SRR25158195_k127_3535195_1 1429851.X548_14320 3.629e-151 482.0 COG0811@1|root,COG0811@2|Bacteria,1NCWW@1224|Proteobacteria,1RMD4@1236|Gammaproteobacteria,1X41S@135614|Xanthomonadales 135614|Xanthomonadales U TolQ protein tolQ - - ko:K03562 ko01120,map01120 - - - ko00000,ko02000 1.A.30.2.2 - - MotA_ExbB SRR25158195_k127_3535195_2 391008.Smal_3121 2.287e-76 257.0 COG0848@1|root,COG0848@2|Bacteria,1RDJZ@1224|Proteobacteria,1S3TA@1236|Gammaproteobacteria,1XC50@135614|Xanthomonadales 135614|Xanthomonadales U Biopolymer transport protein ExbD/TolR tolR - - ko:K03560 - - - - ko00000,ko02000 1.A.30.2.2 - - ExbD SRR25158195_k127_3538278_1 391008.Smal_3257 7.978e-75 252.0 COG0251@1|root,COG0251@2|Bacteria,1MZ3J@1224|Proteobacteria,1S5XS@1236|Gammaproteobacteria,1X6CE@135614|Xanthomonadales 135614|Xanthomonadales J endoribonuclease yjgF - - - - - - - - - - - Ribonuc_L-PSP SRR25158195_k127_3538278_0 391008.Smal_3256 6.287e-317 972.0 COG1200@1|root,COG1200@2|Bacteria,1MWN2@1224|Proteobacteria,1RMMQ@1236|Gammaproteobacteria,1X42Y@135614|Xanthomonadales 135614|Xanthomonadales L Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) recG - 3.6.4.12 ko:K03655 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,HHH_5,Helicase_C,RecG_wedge SRR25158195_k127_3539275_0 522373.Smlt2202 4.575e-276 853.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X9F0@135614|Xanthomonadales 135614|Xanthomonadales V MMPL family - - - ko:K18146,ko:K18296 ko01501,map01501 M00639,M00649 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2.15,2.A.6.2.40 - - ACR_tran SRR25158195_k127_3539275_2 522373.Smlt2204 3.09e-25 108.0 COG3650@1|root,COG3895@1|root,COG3650@2|Bacteria,COG3895@2|Bacteria,1N019@1224|Proteobacteria,1SCMC@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Membrane-bound lysozyme-inhibitor of c-type lysozyme - - - ko:K09914 - - - - ko00000 - - - MliC,YscW SRR25158195_k127_3542878_2 522373.Smlt3991 4.098e-97 317.0 COG0491@1|root,COG0491@2|Bacteria,1MY6G@1224|Proteobacteria,1RRBB@1236|Gammaproteobacteria,1X52I@135614|Xanthomonadales 135614|Xanthomonadales S Metallo-beta-lactamase superfamily mpd - - - - - - - - - - - Lactamase_B SRR25158195_k127_3542878_1 522373.Smlt3992 3.907e-113 380.0 COG0218@1|root,COG0218@2|Bacteria,1MY3Z@1224|Proteobacteria,1RNJP@1236|Gammaproteobacteria,1X5C6@135614|Xanthomonadales 135614|Xanthomonadales D Necessary for normal cell division and for the maintenance of normal septation engB GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - ko:K03978 - - - - ko00000,ko03036 - - - MMR_HSR1 SRR25158195_k127_3542878_0 391008.Smal_3403 9.313e-129 415.0 COG2863@1|root,COG2863@2|Bacteria,1N2NB@1224|Proteobacteria,1RZFP@1236|Gammaproteobacteria,1X4PC@135614|Xanthomonadales 135614|Xanthomonadales C cytochrome - - - - - - - - - - - - Cytochrom_C SRR25158195_k127_3544686_0 522373.Smlt1168 0.0 1172.0 COG0019@1|root,COG0527@1|root,COG0019@2|Bacteria,COG0527@2|Bacteria,1MUA6@1224|Proteobacteria,1SZXB@1236|Gammaproteobacteria,1X4T0@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the Orn Lys Arg decarboxylase class-II family lysA - 2.7.2.4,4.1.1.20 ko:K12526 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00017,M00018,M00526,M00527 R00451,R00480 RC00002,RC00043,RC00299 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,Orn_Arg_deC_N,Orn_DAP_Arg_deC SRR25158195_k127_3544686_1 1429851.X548_03650 1.648e-18 95.0 COG0384@1|root,COG0384@2|Bacteria,1MUAS@1224|Proteobacteria,1RPWM@1236|Gammaproteobacteria,1X3IU@135614|Xanthomonadales 135614|Xanthomonadales S phenazine biosynthesis protein - - - - - - - - - - - - PhzC-PhzF SRR25158195_k127_3549916_3 1429851.X548_12225 3.561e-63 218.0 COG0483@1|root,COG0483@2|Bacteria,1MUQT@1224|Proteobacteria,1RNME@1236|Gammaproteobacteria,1X3SE@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the inositol monophosphatase superfamily suhB - 3.1.3.25 ko:K01092 ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070 M00131 R01185,R01186,R01187 RC00078 ko00000,ko00001,ko00002,ko01000 - - - Inositol_P SRR25158195_k127_3549916_2 522373.Smlt3320 1.709e-144 468.0 COG0565@1|root,COG0565@2|Bacteria,1N47Y@1224|Proteobacteria,1RPD3@1236|Gammaproteobacteria,1X4VZ@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA trmJ - 2.1.1.200 ko:K15396 - - - - ko00000,ko01000,ko03016 - - - SpoU_methylase SRR25158195_k127_3549916_1 522373.Smlt3319 3.526e-180 571.0 COG3221@1|root,COG3221@2|Bacteria,1RKVE@1224|Proteobacteria,1S8D7@1236|Gammaproteobacteria,1XCPB@135614|Xanthomonadales 135614|Xanthomonadales P ABC transporter, phosphonate, periplasmic substrate-binding protein - - - ko:K02044 ko02010,map02010 M00223 - - ko00000,ko00001,ko00002,ko02000 3.A.1.9 - - Phosphonate-bd SRR25158195_k127_3549916_0 522373.Smlt3318 0.0 1195.0 COG2770@1|root,COG5001@1|root,COG2770@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X55C@135614|Xanthomonadales 135614|Xanthomonadales T Putative diguanylate phosphodiesterase - - - - - - - - - - - - EAL,GGDEF,HAMP,PAS_4,sCache_3_2 SRR25158195_k127_355183_3 1265502.KB906017_gene7 4.884e-06 52.0 2DG36@1|root,2ZU9F@2|Bacteria,1PASW@1224|Proteobacteria,2W6JG@28216|Betaproteobacteria 28216|Betaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_355183_2 1434929.X946_1315 3.423e-24 109.0 2E13R@1|root,32WTF@2|Bacteria,1N2DX@1224|Proteobacteria,2VY15@28216|Betaproteobacteria,1KA2B@119060|Burkholderiaceae 28216|Betaproteobacteria S Evidence 5 No homology to any previously reported sequences - - - - - - - - - - - - DUF3304 SRR25158195_k127_355183_1 1003200.AXXA_24385 5.48e-29 126.0 2DND8@1|root,32WWP@2|Bacteria,1N35W@1224|Proteobacteria,2VU9W@28216|Betaproteobacteria 28216|Betaproteobacteria S Domain of unknown function (DUF4123) - - - - - - - - - - - - DUF4123 SRR25158195_k127_355183_0 360094.PXO_02029 2.057e-178 586.0 COG3501@1|root,COG4253@1|root,COG3501@2|Bacteria,COG4253@2|Bacteria,1MU7Q@1224|Proteobacteria,1RN6G@1236|Gammaproteobacteria,1XCAW@135614|Xanthomonadales 135614|Xanthomonadales S Type IV secretion protein Rhs - - - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - DUF2345,Phage_GPD,T6SS_Vgr SRR25158195_k127_3552412_4 522373.Smlt0941 2.524e-78 265.0 COG3305@1|root,COG3305@2|Bacteria,1RKBI@1224|Proteobacteria,1S6AE@1236|Gammaproteobacteria,1XD0Y@135614|Xanthomonadales 135614|Xanthomonadales S Predicted membrane protein (DUF2127) - - - - - - - - - - - - DUF2127 SRR25158195_k127_3552412_0 391008.Smal_0786 1.172e-313 972.0 COG0154@1|root,COG0154@2|Bacteria,1MUVQ@1224|Proteobacteria,1RP7E@1236|Gammaproteobacteria,1X4K6@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia gatAX - 3.5.1.4 ko:K01426 ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120 - R02540,R03096,R03180,R03909,R05551,R05590 RC00010,RC00100,RC00950,RC01025 ko00000,ko00001,ko01000 - - - Amidase,Lipocalin_5 SRR25158195_k127_3552412_2 391008.Smal_0785 8.902e-235 728.0 COG0668@1|root,COG0668@2|Bacteria,1MW7V@1224|Proteobacteria,1RYVT@1236|Gammaproteobacteria,1X3EB@135614|Xanthomonadales 135614|Xanthomonadales M Small-conductance mechanosensitive channel - - - - - - - - - - - - MS_channel SRR25158195_k127_3552412_1 522373.Smlt0937 1.23e-299 922.0 COG3200@1|root,COG3200@2|Bacteria,1MUWF@1224|Proteobacteria,1RRMM@1236|Gammaproteobacteria,1X2YX@135614|Xanthomonadales 135614|Xanthomonadales E phospho-2-dehydro-3-deoxyheptonate aldolase dhs1 - 2.5.1.54 ko:K01626 ko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024 M00022 R01826 RC00435 ko00000,ko00001,ko00002,ko01000 - - - DAHP_synth_2 SRR25158195_k127_3552412_3 391008.Smal_0783 2.772e-85 286.0 COG1629@1|root,COG4771@2|Bacteria,1MWB3@1224|Proteobacteria,1RY5Z@1236|Gammaproteobacteria,1X3EV@135614|Xanthomonadales 135614|Xanthomonadales M receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_3555460_0 522373.Smlt2151 2.66e-179 569.0 COG3049@1|root,COG3049@2|Bacteria,1MWPQ@1224|Proteobacteria,1RN43@1236|Gammaproteobacteria,1X9ZS@135614|Xanthomonadales 135614|Xanthomonadales M Linear amide C-N hydrolases, choloylglycine hydrolase family - - 3.5.1.24 ko:K01442 ko00120,ko00121,ko01100,map00120,map00121,map01100 - R02797,R03975,R03977,R04486,R04487,R05835 RC00090,RC00096 ko00000,ko00001,ko01000 - - - CBAH SRR25158195_k127_3555460_1 391008.Smal_1741 9.626e-67 235.0 COG3431@1|root,COG3431@2|Bacteria,1N6PE@1224|Proteobacteria,1SE25@1236|Gammaproteobacteria,1X7VJ@135614|Xanthomonadales 135614|Xanthomonadales S BLUF domain - - - - - - - - - - - - BLUF SRR25158195_k127_3555460_2 522373.Smlt2144 6.102e-49 175.0 COG0642@1|root,COG2199@1|root,COG2205@2|Bacteria,COG3706@2|Bacteria,1NRP8@1224|Proteobacteria,1RZRU@1236|Gammaproteobacteria,1X3NK@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,Response_reg SRR25158195_k127_3566803_0 1122185.N792_05380 6.81e-172 541.0 COG0403@1|root,COG1003@1|root,COG0403@2|Bacteria,COG1003@2|Bacteria,1MUDP@1224|Proteobacteria,1RND3@1236|Gammaproteobacteria,1X35C@135614|Xanthomonadales 135614|Xanthomonadales E The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor gcvP - 1.4.4.2 ko:K00281,ko:K00283 ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200 M00532 R01221,R03425 RC00022,RC00929,RC02834,RC02880 ko00000,ko00001,ko00002,ko01000 - - - GDC-P SRR25158195_k127_3566803_2 340.xcc-b100_3262 2.053e-67 243.0 COG3145@1|root,COG3145@2|Bacteria,1RGXU@1224|Proteobacteria,1S6DD@1236|Gammaproteobacteria,1X6V0@135614|Xanthomonadales 135614|Xanthomonadales L 2OG-Fe(II) oxygenase superfamily - - - - - - - - - - - - 2OG-FeII_Oxy_2 SRR25158195_k127_3566803_1 935863.AWZR01000006_gene1307 2.392e-83 280.0 COG0587@1|root,COG0587@2|Bacteria,1MUE4@1224|Proteobacteria,1RQA8@1236|Gammaproteobacteria,1X3V7@135614|Xanthomonadales 135614|Xanthomonadales L DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase dnaE2 - 2.7.7.7 ko:K14162 - - - - ko00000,ko01000,ko03400 - - - DNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon SRR25158195_k127_3569321_1 522373.Smlt4056 0.0 1117.0 COG0768@1|root,COG0768@2|Bacteria,1MV8C@1224|Proteobacteria,1RN9H@1236|Gammaproteobacteria,1X374@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes cross-linking of the peptidoglycan cell wall mrdA - 3.4.16.4 ko:K05515 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011 - - - PBP_dimer,Transpeptidase SRR25158195_k127_3569321_8 391008.Smal_3452 3.094e-97 323.0 COG2891@1|root,COG2891@2|Bacteria,1RER7@1224|Proteobacteria,1S26R@1236|Gammaproteobacteria,1X6PV@135614|Xanthomonadales 135614|Xanthomonadales M Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins mreD - - ko:K03571 - - - - ko00000,ko03036 9.B.157.1 - - MreD SRR25158195_k127_3569321_5 522373.Smlt4058 2.882e-182 574.0 COG1792@1|root,COG1792@2|Bacteria,1N8ZS@1224|Proteobacteria,1RMK4@1236|Gammaproteobacteria,1X3A4@135614|Xanthomonadales 135614|Xanthomonadales M Involved in formation and maintenance of cell shape mreC - - ko:K03570 - - - - ko00000,ko03036 9.B.157.1 - - MreC SRR25158195_k127_3569321_2 522373.Smlt4059 4.339e-219 683.0 COG1077@1|root,COG1077@2|Bacteria,1MUMW@1224|Proteobacteria,1RN82@1236|Gammaproteobacteria,1X3UK@135614|Xanthomonadales 135614|Xanthomonadales D Rod shape-determining protein mreB - - ko:K03569 - - - - ko00000,ko02048,ko03036,ko04812 1.A.33.1,9.B.157.1 - - MreB_Mbl SRR25158195_k127_3569321_3 522373.Smlt4060 8.961e-208 647.0 COG0524@1|root,COG0524@2|Bacteria,1QTMS@1224|Proteobacteria,1RQQY@1236|Gammaproteobacteria,1X3WT@135614|Xanthomonadales 135614|Xanthomonadales G Sugar kinase VL23_05530 - 2.7.1.20 ko:K00856 ko00230,ko01100,map00230,map01100 - R00185 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PfkB SRR25158195_k127_3569321_11 1118235.CAJH01000063_gene3490 4.525e-81 277.0 COG0546@1|root,COG0546@2|Bacteria,1RHAA@1224|Proteobacteria,1S5JK@1236|Gammaproteobacteria,1XBYF@135614|Xanthomonadales 135614|Xanthomonadales S haloacid dehalogenase-like hydrolase - - - - - - - - - - - - HAD_2 SRR25158195_k127_3569321_7 522373.Smlt4063 5.139e-147 468.0 COG3064@1|root,COG3064@2|Bacteria,1N4IA@1224|Proteobacteria,1STE0@1236|Gammaproteobacteria,1X64A@135614|Xanthomonadales 135614|Xanthomonadales M Membrane - - - - - - - - - - - - - SRR25158195_k127_3569321_0 391008.Smal_3459 0.0 1248.0 COG0308@1|root,COG0308@2|Bacteria,1MUCI@1224|Proteobacteria,1RSG9@1236|Gammaproteobacteria,1X3F8@135614|Xanthomonadales 135614|Xanthomonadales E aminopeptidase pepN - - - - - - - - - - - Leuk-A4-hydro_C,Peptidase_M1 SRR25158195_k127_3569321_6 391008.Smal_3460 1.114e-163 516.0 COG0500@1|root,COG2226@2|Bacteria,1MX8I@1224|Proteobacteria,1RMAU@1236|Gammaproteobacteria,1X4GY@135614|Xanthomonadales 135614|Xanthomonadales H Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) ubiE - 2.1.1.163,2.1.1.201 ko:K03183 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00116,M00117 R04990,R04993,R06859,R08774,R09736 RC00003,RC01253,RC01662 ko00000,ko00001,ko00002,ko01000 - - - Ubie_methyltran SRR25158195_k127_3569321_9 522373.Smlt4066 9.098e-96 316.0 COG0590@1|root,COG0590@2|Bacteria,1RGMX@1224|Proteobacteria,1S41B@1236|Gammaproteobacteria,1X63C@135614|Xanthomonadales 135614|Xanthomonadales FJ deaminase codA - 3.5.4.1 ko:K01485 ko00240,ko00330,ko01100,map00240,map00330,map01100 - R00974,R01411,R02922 RC00074,RC00514,RC00809 ko00000,ko00001,ko01000 - - - dCMP_cyt_deam_1 SRR25158195_k127_3569321_13 391008.Smal_3463 1.477e-62 218.0 2BMC7@1|root,32FWE@2|Bacteria,1QH9Q@1224|Proteobacteria,1TEV2@1236|Gammaproteobacteria,1XBUE@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3569321_12 391008.Smal_3464 1.633e-76 258.0 COG5478@1|root,COG5478@2|Bacteria,1MZMZ@1224|Proteobacteria,1S9ZW@1236|Gammaproteobacteria,1X7QK@135614|Xanthomonadales 135614|Xanthomonadales S Low affinity iron permease - - - - - - - - - - - - Iron_permease SRR25158195_k127_3569321_10 391008.Smal_3465 5.322e-85 284.0 COG1943@1|root,COG1943@2|Bacteria,1MZZT@1224|Proteobacteria,1S9JG@1236|Gammaproteobacteria,1X7MY@135614|Xanthomonadales 135614|Xanthomonadales L Transposase and inactivated derivatives - - - - - - - - - - - - Y1_Tnp SRR25158195_k127_3569321_4 391008.Smal_3466 4.034e-202 632.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,1RMDA@1236|Gammaproteobacteria,1X3EU@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane efflux protein oprM - - ko:K18139,ko:K18323 ko01501,ko02020,ko02024,map01501,map02020,map02024 M00642,M00643,M00645,M00647,M00718,M00768,M00822 - - ko00000,ko00001,ko00002,ko01504,ko02000 1.B.17,2.A.6.2,2.A.6.2.41 - - OEP SRR25158195_k127_3578752_1 1429851.X548_02670 7.937e-148 468.0 COG0855@1|root,COG0855@2|Bacteria,1MUM3@1224|Proteobacteria,1RNRX@1236|Gammaproteobacteria,1X3E8@135614|Xanthomonadales 135614|Xanthomonadales P Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) ppk - 2.7.4.1 ko:K00937 ko00190,ko03018,map00190,map03018 - - - ko00000,ko00001,ko01000,ko03019 - - - PP_kinase,PP_kinase_C,PP_kinase_N SRR25158195_k127_3578752_0 522373.Smlt0975 3.154e-223 693.0 COG0248@1|root,COG0248@2|Bacteria,1MV35@1224|Proteobacteria,1RN3V@1236|Gammaproteobacteria,1X46J@135614|Xanthomonadales 135614|Xanthomonadales FP Belongs to the GppA Ppx family ppx - 3.6.1.11,3.6.1.40 ko:K01524 ko00230,map00230 - R03409 RC00002 ko00000,ko00001,ko01000 - - - Ppx-GppA SRR25158195_k127_3580214_1 522373.Smlt3523 4.293e-149 472.0 COG0334@1|root,COG0334@2|Bacteria,1MUXS@1224|Proteobacteria,1RQ0T@1236|Gammaproteobacteria,1X3BT@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the Glu Leu Phe Val dehydrogenases family leu - 1.4.1.9 ko:K00263 ko00280,ko00290,ko01100,ko01110,ko01130,map00280,map00290,map01100,map01110,map01130 - R01088,R01434,R02196 RC00006,RC00036 ko00000,ko00001,ko01000 - - - ELFV_dehydrog,ELFV_dehydrog_N SRR25158195_k127_3580214_0 391008.Smal_2954 0.0 1538.0 COG1404@1|root,COG4625@1|root,COG1404@2|Bacteria,COG4625@2|Bacteria,1R79S@1224|Proteobacteria,1RY8R@1236|Gammaproteobacteria,1X5P4@135614|Xanthomonadales 135614|Xanthomonadales O serine protease - - - - - - - - - - - - Autotransporter,PATR,Peptidase_S8 SRR25158195_k127_3580214_2 522373.Smlt3525 2.468e-53 195.0 COG0183@1|root,COG0183@2|Bacteria,1MU5G@1224|Proteobacteria,1RM93@1236|Gammaproteobacteria,1X3A8@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation atoB - 2.3.1.9 ko:K00626 ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020 M00088,M00095,M00373,M00374,M00375 R00238,R01177 RC00004,RC00326 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Thiolase_C,Thiolase_N SRR25158195_k127_358825_0 522373.Smlt1347 2.793e-181 570.0 COG4206@1|root,COG4206@2|Bacteria,1R47X@1224|Proteobacteria,1T1X7@1236|Gammaproteobacteria,1X44I@135614|Xanthomonadales 135614|Xanthomonadales H Secretin and TonB N terminus short domain - - - - - - - - - - - - Plug,STN,TonB_dep_Rec SRR25158195_k127_358825_1 1118235.CAJH01000028_gene1993 7.179e-20 91.0 COG1626@1|root,COG1626@2|Bacteria,1MWSM@1224|Proteobacteria,1RMFP@1236|Gammaproteobacteria,1X39M@135614|Xanthomonadales 135614|Xanthomonadales G Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system treA - 3.2.1.28 ko:K01194 ko00500,ko01100,map00500,map01100 - R00010 RC00049 ko00000,ko00001,ko00537,ko01000 - GH37 - Trehalase SRR25158195_k127_3589102_0 935567.JAES01000025_gene1250 2.648e-172 546.0 COG4146@1|root,COG4146@2|Bacteria,1MXWV@1224|Proteobacteria,1RR4S@1236|Gammaproteobacteria,1X4XH@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family sglT - - ko:K03307 - - - - ko00000 2.A.21 - - SSF SRR25158195_k127_3589102_1 1195236.CTER_0404 7.996e-37 149.0 COG4409@1|root,COG4409@2|Bacteria,1VSB1@1239|Firmicutes,24KSX@186801|Clostridia 186801|Clostridia G Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - - - - - - - - - - RicinB_lectin_2 SRR25158195_k127_3599553_0 452637.Oter_2883 9.71e-139 459.0 COG4225@1|root,COG4225@2|Bacteria,46SGW@74201|Verrucomicrobia,3K7PS@414999|Opitutae 414999|Opitutae S Glycosyl Hydrolase Family 88 - - - - - - - - - - - - Glyco_hydro_88 SRR25158195_k127_3599553_1 313628.LNTAR_08634 1.962e-92 315.0 COG1028@1|root,COG1028@2|Bacteria 313628.LNTAR_08634|- IQ oxidoreductase activity, acting on CH-OH group of donors - - - - - - - - - - - - - SRR25158195_k127_3600651_3 522373.Smlt0521 1.097e-159 507.0 COG0488@1|root,COG0488@2|Bacteria,1MV25@1224|Proteobacteria,1RNM9@1236|Gammaproteobacteria,1X42T@135614|Xanthomonadales 135614|Xanthomonadales S ABC transporter - - - - - - - - - - - - ABC_tran SRR25158195_k127_3600651_0 391008.Smal_0399 7.188e-280 862.0 COG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,1RQDY@1236|Gammaproteobacteria,1X4PY@135614|Xanthomonadales 135614|Xanthomonadales S Cobalamin synthesis protein - - - - - - - - - - - - CobW_C,cobW SRR25158195_k127_3600651_6 391008.Smal_0398 1.192e-64 224.0 2DRCV@1|root,33B8R@2|Bacteria,1NDVJ@1224|Proteobacteria,1T1A9@1236|Gammaproteobacteria,1XD3S@135614|Xanthomonadales 135614|Xanthomonadales S MerC mercury resistance protein - - - - - - - - - - - - MerC SRR25158195_k127_3600651_7 391008.Smal_0397 2.584e-50 179.0 COG1937@1|root,COG1937@2|Bacteria,1N6ZN@1224|Proteobacteria,1S75M@1236|Gammaproteobacteria,1XC2J@135614|Xanthomonadales 135614|Xanthomonadales S Metal-sensitive transcriptional repressor - - - - - - - - - - - - Trns_repr_metal SRR25158195_k127_3600651_1 522373.Smlt0517 5.401e-194 613.0 COG1230@1|root,COG1230@2|Bacteria,1MVQB@1224|Proteobacteria,1RMR8@1236|Gammaproteobacteria,1X4D1@135614|Xanthomonadales 135614|Xanthomonadales P transporter - - - - - - - - - - - - Cation_efflux SRR25158195_k127_3600651_2 522373.Smlt0513 2.735e-180 566.0 COG2521@1|root,COG2521@2|Bacteria,1Q0VI@1224|Proteobacteria,1S18J@1236|Gammaproteobacteria,1XC99@135614|Xanthomonadales 135614|Xanthomonadales S Methyl-transferase - - - ko:K06983 - - - - ko00000 - - - Methyltransf_30 SRR25158195_k127_3600651_4 391008.Smal_0391 3.323e-148 470.0 COG0726@1|root,COG0726@2|Bacteria,1RFCG@1224|Proteobacteria,1S808@1236|Gammaproteobacteria,1X451@135614|Xanthomonadales 135614|Xanthomonadales G polysaccharide deacetylase - - - - - - - - - - - - Polysacc_deac_1 SRR25158195_k127_3606598_2 1121935.AQXX01000131_gene2881 1.089e-22 99.0 28QBW@1|root,2ZCUF@2|Bacteria,1RAC7@1224|Proteobacteria,1S2HY@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_3606598_1 748280.NH8B_1240 9.664e-39 150.0 COG5605@1|root,COG5605@2|Bacteria,1RH8B@1224|Proteobacteria,2VT9G@28216|Betaproteobacteria,2KT4B@206351|Neisseriales 206351|Neisseriales S Prokaryotic Cytochrome C oxidase subunit IV - - - - - - - - - - - - COX4_pro SRR25158195_k127_3606598_0 1041147.AUFB01000008_gene750 3.172e-118 383.0 COG1845@1|root,COG1845@2|Bacteria,1MUCK@1224|Proteobacteria,2U0NA@28211|Alphaproteobacteria,4B7SY@82115|Rhizobiaceae 28211|Alphaproteobacteria C oxidase, subunit coxP - 1.9.3.1 ko:K02276,ko:K02299 ko00190,ko01100,map00190,map01100 M00155,M00417 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.4,3.D.4.5,3.D.4.6 - - COX3 SRR25158195_k127_3606598_3 869210.Marky_1964 5.871e-19 87.0 COG1845@1|root,COG1845@2|Bacteria,1WK7G@1297|Deinococcus-Thermus 1297|Deinococcus-Thermus C cytochrome c oxidase, subunit III - - 1.9.3.1 ko:K02276 ko00190,ko01100,map00190,map01100 M00155 R00081 RC00016 ko00000,ko00001,ko00002,ko01000 3.D.4.4,3.D.4.6 - - COX3 SRR25158195_k127_361074_1 522373.Smlt3859 8.895e-141 450.0 COG3170@1|root,COG3170@2|Bacteria,1QV1N@1224|Proteobacteria,1T261@1236|Gammaproteobacteria,1XDAB@135614|Xanthomonadales 135614|Xanthomonadales NU Protein of unknown function (DUF1631) - - - - - - - - - - - - DUF1631 SRR25158195_k127_361074_2 391008.Smal_3275 3.95e-63 231.0 2DN7J@1|root,32VZC@2|Bacteria,1N6CR@1224|Proteobacteria,1SAGW@1236|Gammaproteobacteria,1X7XU@135614|Xanthomonadales 135614|Xanthomonadales S PilZ domain - - - - - - - - - - - - PilZ SRR25158195_k127_361074_0 522373.Smlt3861 6.203e-297 911.0 COG0006@1|root,COG0006@2|Bacteria,1MURT@1224|Proteobacteria,1RMKT@1236|Gammaproteobacteria,1X3Z6@135614|Xanthomonadales 135614|Xanthomonadales E Splits dipeptides with a prolyl residue in the C- terminal position pepQ - 3.4.13.9 ko:K01271 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M24 SRR25158195_k127_3612800_1 1429851.X548_00610 7.946e-289 887.0 COG2234@1|root,COG2234@2|Bacteria,1MV86@1224|Proteobacteria,1S10R@1236|Gammaproteobacteria,1XC9V@135614|Xanthomonadales 135614|Xanthomonadales S peptidase - - - - - - - - - - - - PA,Peptidase_M28 SRR25158195_k127_3612800_2 391008.Smal_0420 3.197e-247 768.0 COG2972@1|root,COG2972@2|Bacteria,1MXVQ@1224|Proteobacteria,1S5XF@1236|Gammaproteobacteria,1X4HJ@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - His_kinase SRR25158195_k127_3612800_4 522373.Smlt0543 3.483e-137 439.0 COG3279@1|root,COG3279@2|Bacteria,1MUE8@1224|Proteobacteria,1SYRB@1236|Gammaproteobacteria,1XCSU@135614|Xanthomonadales 135614|Xanthomonadales KT Transcriptional regulator - - - - - - - - - - - - LytTR,Response_reg SRR25158195_k127_3612800_5 1429851.X548_00625 3.882e-40 154.0 2AP77@1|root,31E8Z@2|Bacteria,1QBIK@1224|Proteobacteria,1T740@1236|Gammaproteobacteria,1X8R0@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3612800_3 522373.Smlt0545 2.387e-160 510.0 2A4H9@1|root,30T3J@2|Bacteria,1PCR6@1224|Proteobacteria,1SXVY@1236|Gammaproteobacteria,1X6VU@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3612800_0 522373.Smlt0550 0.0 1169.0 COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,1RNNA@1236|Gammaproteobacteria,1X4B6@135614|Xanthomonadales 135614|Xanthomonadales O peptidase - - - ko:K07386 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M13,Peptidase_M13_N SRR25158195_k127_361409_2 391008.Smal_3398 9.729e-95 310.0 COG3572@1|root,COG3572@2|Bacteria,1MU47@1224|Proteobacteria,1SKFF@1236|Gammaproteobacteria,1X3I6@135614|Xanthomonadales 135614|Xanthomonadales H glutamate--cysteine ligase gsh1 - 6.3.2.2 ko:K01919 ko00270,ko00480,ko01100,map00270,map00480,map01100 M00118 R00894,R10993 RC00064,RC00090 ko00000,ko00001,ko00002,ko01000 - - - GCS2 SRR25158195_k127_361409_0 1118235.CAJH01000021_gene1275 2.819e-207 647.0 COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,1RN4D@1236|Gammaproteobacteria,1X3TU@135614|Xanthomonadales 135614|Xanthomonadales S dehydrogenase - - - ko:K13979 - - - - ko00000,ko01000 - - - ADH_N,ADH_zinc_N SRR25158195_k127_361409_1 522373.Smlt3986 1.53e-163 517.0 COG0583@1|root,COG0583@2|Bacteria,1MU2E@1224|Proteobacteria,1RYV3@1236|Gammaproteobacteria,1X5J0@135614|Xanthomonadales 135614|Xanthomonadales K LysR substrate binding domain - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_361409_3 522373.Smlt3982 6.102e-82 276.0 2E2C9@1|root,32XHA@2|Bacteria 2|Bacteria S Psort location Cytoplasmic, score 8.96 - - - - - - - - - - - - SMI1_KNR4,SUKH_6 SRR25158195_k127_3622801_10 1429851.X548_08335 1.24e-15 76.0 COG1344@1|root,COG1344@2|Bacteria,1MV1N@1224|Proteobacteria,1RN0Y@1236|Gammaproteobacteria,1X3H3@135614|Xanthomonadales 135614|Xanthomonadales N Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella fliC - - ko:K02406 ko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134 - - - ko00000,ko00001,ko02035 - - - Flagellin_C,Flagellin_IN,Flagellin_N SRR25158195_k127_3622801_3 1429851.X548_08325 8.032e-247 771.0 COG1345@1|root,COG1345@2|Bacteria,1MUVP@1224|Proteobacteria,1RS2S@1236|Gammaproteobacteria,1X44V@135614|Xanthomonadales 135614|Xanthomonadales N Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end fliD - - ko:K02407 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - Flagellin_IN,FliD_C,FliD_N SRR25158195_k127_3622801_6 391008.Smal_1891 3.983e-79 267.0 COG1516@1|root,COG1516@2|Bacteria,1MZ3G@1224|Proteobacteria,1S8TQ@1236|Gammaproteobacteria,1X88V@135614|Xanthomonadales 135614|Xanthomonadales N flagellar protein FliS fliS - - ko:K02422 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - FliS SRR25158195_k127_3622801_5 391008.Smal_1889 3.571e-109 358.0 2EJ60@1|root,33CX7@2|Bacteria,1N4PT@1224|Proteobacteria,1SEKA@1236|Gammaproteobacteria,1X819@135614|Xanthomonadales 135614|Xanthomonadales S Atypical PilZ domain, cyclic di-GMP receptor - - - - - - - - - - - - PilZ_2 SRR25158195_k127_3622801_4 391008.Smal_1888 1.96e-126 406.0 COG2197@1|root,COG2197@2|Bacteria,1MWGM@1224|Proteobacteria,1RQ1J@1236|Gammaproteobacteria,1XCB9@135614|Xanthomonadales 135614|Xanthomonadales K response regulator - - - - - - - - - - - - GerE,Response_reg SRR25158195_k127_3622801_2 391008.Smal_1885 9.894e-271 841.0 COG1508@1|root,COG1508@2|Bacteria,1R9V6@1224|Proteobacteria,1S1RR@1236|Gammaproteobacteria,1X3HW@135614|Xanthomonadales 135614|Xanthomonadales K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released rpoN1 - - ko:K03092 ko02020,ko05111,map02020,map05111 - - - ko00000,ko00001,ko03021 - - - Sigma54_AID,Sigma54_CBD,Sigma54_DBD SRR25158195_k127_3622801_7 391008.Smal_1884 1.191e-72 248.0 COG2197@1|root,COG2197@2|Bacteria,1N5IE@1224|Proteobacteria,1SBR6@1236|Gammaproteobacteria,1X7GT@135614|Xanthomonadales 135614|Xanthomonadales T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg SRR25158195_k127_3622801_1 1429851.X548_08290 1.342e-302 932.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,1T1IW@1236|Gammaproteobacteria,1X3YG@135614|Xanthomonadales 135614|Xanthomonadales T Fis family transcriptional regulator fleQ - - ko:K10941 ko02020,ko02025,ko05111,map02020,map02025,map05111 - - - ko00000,ko00001,ko03000 - - - FleQ,HTH_8,Sigma54_activat SRR25158195_k127_3622801_8 1429851.X548_08280 1.325e-60 217.0 COG1677@1|root,COG1677@2|Bacteria,1N6RZ@1224|Proteobacteria,1SD52@1236|Gammaproteobacteria,1X7II@135614|Xanthomonadales 135614|Xanthomonadales N Flagellar hook-basal body complex protein FliE fliE - - ko:K02408 ko02040,map02040 - - - ko00000,ko00001,ko02035 - - - FliE SRR25158195_k127_3622801_0 522373.Smlt2289 6.384e-317 973.0 COG1766@1|root,COG1766@2|Bacteria,1MUQR@1224|Proteobacteria,1RN6T@1236|Gammaproteobacteria,1X4M2@135614|Xanthomonadales 135614|Xanthomonadales N The M ring may be actively involved in energy transduction fliF - - ko:K02409 ko02040,map02040 - - - ko00000,ko00001,ko02035,ko02044 3.A.6.2,3.A.6.3 - - YscJ_FliF,YscJ_FliF_C SRR25158195_k127_3628319_3 522373.Smlt0407 8.018e-177 557.0 COG2216@1|root,COG2216@2|Bacteria,1MU7D@1224|Proteobacteria,1RPPF@1236|Gammaproteobacteria,1X2YJ@135614|Xanthomonadales 135614|Xanthomonadales P Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system kdpB - 3.6.3.12 ko:K01547 ko02020,map02020 - - - ko00000,ko00001,ko01000 3.A.3.7 - - E1-E2_ATPase,Hydrolase SRR25158195_k127_3628319_0 1429851.X548_20780 0.0 1046.0 COG2060@1|root,COG2060@2|Bacteria,1MV1K@1224|Proteobacteria,1RQZU@1236|Gammaproteobacteria,1X324@135614|Xanthomonadales 135614|Xanthomonadales P Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane kdpA - 3.6.3.12 ko:K01546 ko02020,map02020 - - - ko00000,ko00001,ko01000 3.A.3.7 - - KdpA SRR25158195_k127_3628319_5 391008.Smal_0293 1.069e-105 348.0 2DJFD@1|root,305YN@2|Bacteria,1RJVQ@1224|Proteobacteria,1SIB3@1236|Gammaproteobacteria,1X6NY@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - DUF4124 SRR25158195_k127_3628319_4 522373.Smlt0411 8.329e-124 415.0 COG0461@1|root,COG0461@2|Bacteria,1MW6F@1224|Proteobacteria,1RQYG@1236|Gammaproteobacteria,1X3TD@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) pyrE - 2.4.2.10 ko:K00762 ko00240,ko01100,map00240,map01100 M00051 R01870 RC00611 ko00000,ko00001,ko00002,ko01000 - - - Pribosyltran SRR25158195_k127_3628319_2 522373.Smlt0412 7.008e-185 577.0 COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,1RN4H@1236|Gammaproteobacteria,1X301@135614|Xanthomonadales 135614|Xanthomonadales L DNA-(Apurinic or apyrimidinic site) lyase exoA - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos SRR25158195_k127_3628319_1 1429851.X548_20805 2.708e-253 794.0 COG0477@1|root,COG2814@2|Bacteria,1MUZ8@1224|Proteobacteria,1T1NH@1236|Gammaproteobacteria,1X37G@135614|Xanthomonadales 135614|Xanthomonadales EGP Major facilitator superfamily ampG - - ko:K08218 ko01501,map01501 M00628 - - ko00000,ko00001,ko00002,ko02000 2.A.1.25 - - MFS_1 SRR25158195_k127_3628319_6 522373.Smlt0414 1.838e-36 139.0 29EYW@1|root,301WP@2|Bacteria,1QDFQ@1224|Proteobacteria,1T9EG@1236|Gammaproteobacteria,1X8AS@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3629079_2 522373.Smlt0890 1.71e-252 781.0 COG0050@1|root,COG0050@2|Bacteria,1MVC0@1224|Proteobacteria,1RMYX@1236|Gammaproteobacteria,1X48A@135614|Xanthomonadales 135614|Xanthomonadales J GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis tuf - - ko:K02358 - - - - ko00000,ko03012,ko03029,ko04147 - - - GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3 SRR25158195_k127_3629079_0 522373.Smlt0903 0.0 1409.0 COG0480@1|root,COG0480@2|Bacteria,1MUCV@1224|Proteobacteria,1RNSZ@1236|Gammaproteobacteria,1X3IW@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome fusA - - ko:K02355 - - - - ko00000,ko03012,ko03029 - - - EFG_C,EFG_II,EFG_IV,GTP_EFTU,GTP_EFTU_D2 SRR25158195_k127_3629079_3 522373.Smlt0902 5.304e-93 306.0 COG0049@1|root,COG0049@2|Bacteria,1MXC8@1224|Proteobacteria,1RN77@1236|Gammaproteobacteria,1X56E@135614|Xanthomonadales 135614|Xanthomonadales J One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA rpsG GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02992 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S7 SRR25158195_k127_3629079_4 340.xcc-b100_3464 7.206e-75 254.0 COG0048@1|root,COG0048@2|Bacteria,1RCWY@1224|Proteobacteria,1S3WB@1236|Gammaproteobacteria,1X6C9@135614|Xanthomonadales 135614|Xanthomonadales J Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit rpsL GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02950 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosom_S12_S23 SRR25158195_k127_3629079_1 522373.Smlt0899 0.0 1223.0 COG0086@1|root,COG0086@2|Bacteria,1MU3M@1224|Proteobacteria,1RPYH@1236|Gammaproteobacteria,1X3IQ@135614|Xanthomonadales 135614|Xanthomonadales K DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates rpoC GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 ko:K03046 ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 M00183 R00435,R00441,R00442,R00443 RC02795 br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 - - - RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 SRR25158195_k127_3632389_2 522373.Smlt3930 4.73e-248 766.0 COG1519@1|root,COG1519@2|Bacteria,1MU9F@1224|Proteobacteria,1RNBR@1236|Gammaproteobacteria,1X4GI@135614|Xanthomonadales 135614|Xanthomonadales M transferase waaA - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 ko:K02527 ko00540,ko01100,map00540,map01100 M00060,M00080 R04658,R05074,R09763 RC00009,RC00077,RC00247 ko00000,ko00001,ko00002,ko01000,ko01003,ko01005 - GT30 - Glycos_transf_1,Glycos_transf_N SRR25158195_k127_3632389_6 391008.Smal_3344 7.209e-116 386.0 COG0531@1|root,COG0531@2|Bacteria 2|Bacteria E amino acid - - - - - - - - - - - - AA_permease_2,SLC12 SRR25158195_k127_3632389_1 522373.Smlt3928 3.825e-266 824.0 COG1538@1|root,COG1538@2|Bacteria,1MWCJ@1224|Proteobacteria,1RQQV@1236|Gammaproteobacteria,1X306@135614|Xanthomonadales 135614|Xanthomonadales MU TIGRFAM type I secretion outer membrane protein, TolC family raxC - - ko:K12340 ko01501,ko01503,ko02020,ko03070,ko04626,ko05133,map01501,map01503,map02020,map03070,map04626,map05133 M00325,M00326,M00339,M00571,M00575,M00646,M00647,M00696,M00697,M00709,M00720,M00821 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko02044 1.B.17,2.A.6.2 - - OEP SRR25158195_k127_3632389_4 522373.Smlt3927 6.016e-132 422.0 COG2518@1|root,COG2518@2|Bacteria,1RD6S@1224|Proteobacteria,1S0KH@1236|Gammaproteobacteria,1X4FI@135614|Xanthomonadales 135614|Xanthomonadales O protein-L-isoaspartate O-methyltransferase pcm - 2.1.1.77 ko:K00573 - - - - ko00000,ko01000 - - - PCMT SRR25158195_k127_3632389_5 391008.Smal_3341 3.651e-128 411.0 COG1309@1|root,COG1309@2|Bacteria,1MZ9E@1224|Proteobacteria,1S8XT@1236|Gammaproteobacteria,1X5Z1@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - ko:K18301 - M00642 - - ko00000,ko00002,ko01504,ko03000 - - - TetR_C_7,TetR_N SRR25158195_k127_3632389_3 522373.Smlt3925 2.685e-211 659.0 COG0845@1|root,COG0845@2|Bacteria,1NJDF@1224|Proteobacteria,1RSFR@1236|Gammaproteobacteria,1XCTZ@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - ko:K18302 - M00642 - - ko00000,ko00002,ko01504,ko02000 2.A.6.2,8.A.1 - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 SRR25158195_k127_3632389_0 1118235.CAJH01000022_gene1333 7.487e-279 859.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X41A@135614|Xanthomonadales 135614|Xanthomonadales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K18303 - M00642 - - ko00000,ko00002,ko01504,ko02000 2.A.6.2.17 - - ACR_tran SRR25158195_k127_36388_1 391008.Smal_1017 1.017e-223 694.0 COG0366@1|root,COG0366@2|Bacteria,1MVKX@1224|Proteobacteria,1RMSH@1236|Gammaproteobacteria,1X50G@135614|Xanthomonadales 135614|Xanthomonadales G alpha-glucosidase aglA - 3.2.1.20 ko:K01187 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R06087,R06088 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH31 - Alpha-amylase,DUF3459,Malt_amylase_C SRR25158195_k127_36388_0 1429851.X548_03690 0.0 1049.0 COG1629@1|root,COG4772@1|root,COG1629@2|Bacteria,COG4772@2|Bacteria,1MWTT@1224|Proteobacteria,1RRQ9@1236|Gammaproteobacteria,1X33Z@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor proteins mostly Fe transport - - - - - - - - - - - - OMP_b-brl_3,Plug,TonB_dep_Rec SRR25158195_k127_3643013_3 84531.JMTZ01000009_gene3237 1.841e-86 293.0 COG0107@1|root,COG0107@2|Bacteria,1MUS0@1224|Proteobacteria,1RPJQ@1236|Gammaproteobacteria,1X39D@135614|Xanthomonadales 135614|Xanthomonadales E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit hisF GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - ko:K02500 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth SRR25158195_k127_3643013_1 391008.Smal_1761 5.482e-141 452.0 COG0106@1|root,COG0106@2|Bacteria,1MW6S@1224|Proteobacteria,1RN3M@1236|Gammaproteobacteria,1X3ZJ@135614|Xanthomonadales 135614|Xanthomonadales E 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase hisA GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 ko:K01814 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04640 RC00945 ko00000,ko00001,ko00002,ko01000 - - - His_biosynth SRR25158195_k127_3643013_2 391008.Smal_1760 1.057e-117 381.0 COG0118@1|root,COG0118@2|Bacteria,1MU4X@1224|Proteobacteria,1RRP3@1236|Gammaproteobacteria,1X5IB@135614|Xanthomonadales 135614|Xanthomonadales E IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR hisH - - ko:K02501 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04558 RC00010,RC01190,RC01943 ko00000,ko00001,ko00002,ko01000 - - - GATase SRR25158195_k127_3643013_0 1429851.X548_07670 9.484e-237 732.0 COG0131@1|root,COG0241@1|root,COG0131@2|Bacteria,COG0241@2|Bacteria,1MWBS@1224|Proteobacteria,1RPA9@1236|Gammaproteobacteria,1X38F@135614|Xanthomonadales 135614|Xanthomonadales E Histidine biosynthesis bifunctional protein HisB hisB GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.15,4.2.1.19 ko:K01089 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R03013,R03457 RC00017,RC00932 ko00000,ko00001,ko00002,ko01000 - - - Hydrolase_like,IGPD,PNK3P SRR25158195_k127_3644060_1 391008.Smal_3735 3.077e-142 456.0 COG0530@1|root,COG0530@2|Bacteria,1MU3R@1224|Proteobacteria,1RMRD@1236|Gammaproteobacteria,1X3N5@135614|Xanthomonadales 135614|Xanthomonadales P antiporter - - - ko:K07301 - - - - ko00000,ko02000 2.A.19.5 - - Na_Ca_ex SRR25158195_k127_3644060_2 522373.Smlt4327 2.616e-119 385.0 2A97U@1|root,30YCI@2|Bacteria,1NMTT@1224|Proteobacteria,1T13P@1236|Gammaproteobacteria,1X7PY@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3644060_4 391008.Smal_3737 4.034e-70 248.0 2C0C4@1|root,32WYX@2|Bacteria,1N4M8@1224|Proteobacteria,1T6VN@1236|Gammaproteobacteria,1X890@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3644060_0 522373.Smlt4329 1.307e-288 889.0 COG3508@1|root,COG3508@2|Bacteria,1MV9G@1224|Proteobacteria,1RQG2@1236|Gammaproteobacteria,1X40V@135614|Xanthomonadales 135614|Xanthomonadales Q Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate hmgA - 1.13.11.5 ko:K00451 ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120 M00044 R02519 RC00737 ko00000,ko00001,ko00002,ko01000 - - - HgmA SRR25158195_k127_3644060_3 522373.Smlt4330 3.123e-94 308.0 COG3185@1|root,COG3185@2|Bacteria,1MUVZ@1224|Proteobacteria,1RN2Z@1236|Gammaproteobacteria,1X38W@135614|Xanthomonadales 135614|Xanthomonadales E 4-hydroxyphenylpyruvate dioxygenase hppD - 1.13.11.27 ko:K00457 ko00130,ko00350,ko00360,ko01100,map00130,map00350,map00360,map01100 M00044 R01372,R02521 RC00505,RC00738 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Glyoxalase,Glyoxalase_5 SRR25158195_k127_3648796_4 522373.Smlt3214 2.526e-11 64.0 COG3909@1|root,COG3909@2|Bacteria,1QAZ7@1224|Proteobacteria,1T6FW@1236|Gammaproteobacteria,1X7ET@135614|Xanthomonadales 135614|Xanthomonadales C cytochrome - - - - - - - - - - - - Cytochrom_C_2 SRR25158195_k127_3648796_0 522373.Smlt3215 9.652e-92 304.0 COG3133@1|root,COG3133@2|Bacteria,1N3A1@1224|Proteobacteria,1S9XT@1236|Gammaproteobacteria,1X73T@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane lipoprotein pcp - - ko:K06077 - - - - ko00000 - - - Rick_17kDa_Anti SRR25158195_k127_3648796_2 522373.Smlt3216 6.379e-36 139.0 COG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,1SCA7@1236|Gammaproteobacteria,1X7IF@135614|Xanthomonadales 135614|Xanthomonadales K Cold shock - - - ko:K03704 - - - - ko00000,ko03000 - - - CSD SRR25158195_k127_3648796_1 391008.Smal_2650 1.184e-87 292.0 COG2839@1|root,COG2839@2|Bacteria,1MZEV@1224|Proteobacteria,1SAFY@1236|Gammaproteobacteria,1X6YB@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - ko:K09793 - - - - ko00000 - - - DUF456 SRR25158195_k127_3648796_3 391008.Smal_2651 2.731e-23 101.0 COG2829@1|root,COG2829@2|Bacteria,1PC8I@1224|Proteobacteria,1RMJH@1236|Gammaproteobacteria,1X44M@135614|Xanthomonadales 135614|Xanthomonadales M phospholipase pldA - 3.1.1.32,3.1.1.4 ko:K01058 ko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,map00564,map00565,map00590,map00591,map00592,map01100,map01110 - R01315,R01316,R01317,R02053,R02054,R04034,R07064,R07379,R07387,R07859,R07860 RC00020,RC00037,RC00041,RC00094 ko00000,ko00001,ko01000 - - - PLA1 SRR25158195_k127_3650303_1 1429851.X548_13720 5.724e-57 199.0 COG0330@1|root,COG0330@2|Bacteria,1MUM2@1224|Proteobacteria,1RMUG@1236|Gammaproteobacteria,1X40A@135614|Xanthomonadales 135614|Xanthomonadales O HflC and HflK could encode or regulate a protease hflK - - ko:K04088 - M00742 - - ko00000,ko00002,ko01000 - - - Band_7,HflK_N SRR25158195_k127_3650303_0 391008.Smal_3015 2.14e-175 551.0 COG0330@1|root,COG0330@2|Bacteria,1MV7R@1224|Proteobacteria,1RM8Z@1236|Gammaproteobacteria,1X3E5@135614|Xanthomonadales 135614|Xanthomonadales O HflC and HflK could regulate a protease hflC - - ko:K04087 - M00742 - - ko00000,ko00002,ko01000 - - - Band_7 SRR25158195_k127_3650303_3 522373.Smlt3594 4.946e-29 120.0 COG3242@1|root,COG3242@2|Bacteria,1NG9Q@1224|Proteobacteria,1SH40@1236|Gammaproteobacteria,1X8QJ@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized protein conserved in bacteria (DUF2065) - - - ko:K09937 - - - - ko00000 - - - DUF2065 SRR25158195_k127_3650303_2 935567.JAES01000036_gene2921 2.956e-54 194.0 COG0104@1|root,COG0104@2|Bacteria,1MU5B@1224|Proteobacteria,1RNEW@1236|Gammaproteobacteria,1X2X7@135614|Xanthomonadales 135614|Xanthomonadales F Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP purA GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 ko:K01939 ko00230,ko00250,ko01100,map00230,map00250,map01100 M00049 R01135 RC00458,RC00459 ko00000,ko00001,ko00002,ko01000 - - - Adenylsucc_synt SRR25158195_k127_3651251_2 1429851.X548_08720 4.973e-32 126.0 COG1472@1|root,COG1472@2|Bacteria,1MVIV@1224|Proteobacteria,1RMA0@1236|Gammaproteobacteria,1X4AX@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 3 family - - 3.2.1.21 ko:K05349 ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 - R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 ko00000,ko00001,ko01000 - GH3 - Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C,PA14 SRR25158195_k127_3651251_0 1429851.X548_08715 9.584e-272 843.0 COG2211@1|root,COG3507@1|root,COG2211@2|Bacteria,COG3507@2|Bacteria,1MZZY@1224|Proteobacteria,1RP03@1236|Gammaproteobacteria 1236|Gammaproteobacteria G Belongs to the glycosyl hydrolase 43 family - - - - - - - - - - - - Glyco_hydro_43 SRR25158195_k127_3651251_1 1442599.JAAN01000043_gene447 6.625e-64 223.0 COG3507@1|root,COG3507@2|Bacteria,1MZZY@1224|Proteobacteria,1RP03@1236|Gammaproteobacteria,1X37X@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 43 family - - - - - - - - - - - - Glyco_hydro_43 SRR25158195_k127_3652257_3 391008.Smal_3717 2.768e-150 477.0 COG0560@1|root,COG0560@2|Bacteria,1MWTU@1224|Proteobacteria,1SHRU@1236|Gammaproteobacteria,1X3S3@135614|Xanthomonadales 135614|Xanthomonadales E haloacid dehalogenase - - 3.1.3.27 ko:K18697 ko00564,map00564 - R02029 RC00017 ko00000,ko00001,ko01000 - - - HAD SRR25158195_k127_3652257_2 522373.Smlt4309 2.174e-156 496.0 COG0134@1|root,COG0134@2|Bacteria,1MW5K@1224|Proteobacteria,1RNYH@1236|Gammaproteobacteria,1X42P@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the TrpC family trpC GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 ko:K01609 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R03508 RC00944 ko00000,ko00001,ko00002,ko01000 - - - IGPS SRR25158195_k127_3652257_1 522373.Smlt4310 1.034e-208 650.0 COG0547@1|root,COG0547@2|Bacteria,1MUPV@1224|Proteobacteria,1RNXV@1236|Gammaproteobacteria,1X46V@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) trpD GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 ko:K00766 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00023 R01073 RC00440 ko00000,ko00001,ko00002,ko01000 - - - Glycos_trans_3N,Glycos_transf_3 SRR25158195_k127_3652257_4 522373.Smlt4311 6.649e-124 399.0 COG0512@1|root,COG0512@2|Bacteria,1MV5Y@1224|Proteobacteria,1RMQW@1236|Gammaproteobacteria,1X41Q@135614|Xanthomonadales 135614|Xanthomonadales EH with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine trpG - 4.1.3.27 ko:K01658 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - GATase SRR25158195_k127_3652257_0 522373.Smlt4313 1.093e-265 818.0 COG0147@1|root,COG0147@2|Bacteria,1MVBJ@1224|Proteobacteria,1RMSE@1236|Gammaproteobacteria,1X3D1@135614|Xanthomonadales 135614|Xanthomonadales E Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia trpE - 4.1.3.27 ko:K01657 ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025 M00023 R00985,R00986 RC00010,RC02148,RC02414 ko00000,ko00001,ko00002,ko01000 - - - Anth_synt_I_N,Chorismate_bind SRR25158195_k127_3653114_0 522373.Smlt2035 0.0 1047.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X5CT@135614|Xanthomonadales 135614|Xanthomonadales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - ko:K03296 - - - - ko00000 2.A.6.2 - - ACR_tran SRR25158195_k127_3653114_1 1429851.X548_07075 1.325e-208 651.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X3PQ@135614|Xanthomonadales 135614|Xanthomonadales V Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family mdtB - - ko:K03296 - - - - ko00000 2.A.6.2 - - ACR_tran SRR25158195_k127_3660060_2 522373.Smlt0222 1.423e-51 182.0 COG0204@1|root,COG0204@2|Bacteria,1RJMS@1224|Proteobacteria,1S71V@1236|Gammaproteobacteria,1X64J@135614|Xanthomonadales 135614|Xanthomonadales I Acyltransferase - - - - - - - - - - - - Acyltransferase SRR25158195_k127_3660060_0 1429851.X548_20065 0.0 1393.0 COG0339@1|root,COG0339@2|Bacteria,1MU1K@1224|Proteobacteria,1RMXI@1236|Gammaproteobacteria,1X3Q6@135614|Xanthomonadales 135614|Xanthomonadales E Dipeptidyl carboxypeptidase dcp2 - 3.4.15.5 ko:K01284 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M3 SRR25158195_k127_3660060_1 391008.Smal_0182 9.105e-88 290.0 COG0757@1|root,COG0757@2|Bacteria,1QCMZ@1224|Proteobacteria,1T8DI@1236|Gammaproteobacteria,1XAHB@135614|Xanthomonadales 135614|Xanthomonadales E 3-dehydroquinate dehydratase aroD - 4.2.1.10 ko:K03785 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03084 RC00848 ko00000,ko00001,ko00002,ko01000 - - - DHquinase_II SRR25158195_k127_3660339_0 391008.Smal_0327 1.16e-211 662.0 COG0533@1|root,COG0533@2|Bacteria,1MU6S@1224|Proteobacteria,1RN8M@1236|Gammaproteobacteria,1X4QH@135614|Xanthomonadales 135614|Xanthomonadales O Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction tsaD GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 ko:K01409 - - R10648 RC00070,RC00416 ko00000,ko01000,ko03016 - - - Peptidase_M22 SRR25158195_k127_3660339_5 1121015.N789_09435 2.063e-34 135.0 COG0828@1|root,COG0828@2|Bacteria,1MZCC@1224|Proteobacteria,1S8QZ@1236|Gammaproteobacteria,1X7FD@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the bacterial ribosomal protein bS21 family rpsU GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - ko:K02970 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S21 SRR25158195_k127_3660339_4 522373.Smlt0443 3.373e-73 250.0 COG1610@1|root,COG1610@2|Bacteria,1RGZS@1224|Proteobacteria,1S61A@1236|Gammaproteobacteria,1X6H1@135614|Xanthomonadales 135614|Xanthomonadales S Glutamyl-tRNA amidotransferase - - - ko:K09117 - - - - ko00000 - - - YqeY SRR25158195_k127_3660339_1 1118235.CAJH01000061_gene3427 9.028e-154 492.0 2BQ5T@1|root,32J08@2|Bacteria,1NV57@1224|Proteobacteria,1SNJR@1236|Gammaproteobacteria,1X7WY@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3660339_2 391008.Smal_0324 3.512e-153 488.0 COG1295@1|root,COG1295@2|Bacteria,1R9UY@1224|Proteobacteria,1S11F@1236|Gammaproteobacteria,1X5IZ@135614|Xanthomonadales 135614|Xanthomonadales S BrkB protein - - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB SRR25158195_k127_3660339_3 522373.Smlt0441 3.097e-127 408.0 COG0358@1|root,COG0358@2|Bacteria,1MUHC@1224|Proteobacteria,1RMGA@1236|Gammaproteobacteria,1X4K0@135614|Xanthomonadales 135614|Xanthomonadales L RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication dnaG - - ko:K02316 ko03030,map03030 - - - ko00000,ko00001,ko01000,ko03032 - - - DnaB_bind,DnaG_DnaB_bind,Toprim_2,Toprim_4,Toprim_N,zf-CHC2 SRR25158195_k127_3668627_6 1429851.X548_05290 1.208e-173 547.0 COG0573@1|root,COG0573@2|Bacteria,1MVKP@1224|Proteobacteria,1RQXJ@1236|Gammaproteobacteria,1X33D@135614|Xanthomonadales 135614|Xanthomonadales P probably responsible for the translocation of the substrate across the membrane pstC - - ko:K02037 ko02010,map02010 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - BPD_transp_1 SRR25158195_k127_3668627_3 1429851.X548_05295 3.054e-222 691.0 COG0226@1|root,COG0226@2|Bacteria,1MUAZ@1224|Proteobacteria,1RN5Q@1236|Gammaproteobacteria,1X3FS@135614|Xanthomonadales 135614|Xanthomonadales P Part of the ABC transporter complex PstSACB involved in phosphate import pstS - - ko:K02040 ko02010,ko02020,ko05152,map02010,map02020,map05152 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - PBP_like_2 SRR25158195_k127_3668627_4 1429851.X548_05300 1.144e-209 658.0 COG0226@1|root,COG0226@2|Bacteria,1MUAZ@1224|Proteobacteria,1RN5Q@1236|Gammaproteobacteria,1X3FS@135614|Xanthomonadales 135614|Xanthomonadales P Part of the ABC transporter complex PstSACB involved in phosphate import - - - ko:K02040 ko02010,ko02020,ko05152,map02010,map02020,map05152 M00222 - - ko00000,ko00001,ko00002,ko02000 3.A.1.7 - - PBP_like_2 SRR25158195_k127_3668627_2 522373.Smlt1555 2.368e-264 818.0 COG3746@1|root,COG3746@2|Bacteria,1RA39@1224|Proteobacteria,1RYTV@1236|Gammaproteobacteria,1X3MD@135614|Xanthomonadales 135614|Xanthomonadales P Phosphate-selective porin O and P - - - ko:K07221 - - - - ko00000,ko02000 1.B.5.1 - - Porin_O_P SRR25158195_k127_3668627_9 1429851.X548_05315 7.402e-140 448.0 COG0177@1|root,COG0177@2|Bacteria,1MUYQ@1224|Proteobacteria,1RMHU@1236|Gammaproteobacteria,1X340@135614|Xanthomonadales 135614|Xanthomonadales L DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate nth - 4.2.99.18 ko:K10773 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - EndIII_4Fe-2S,HhH-GPD SRR25158195_k127_3668627_16 522373.Smlt1557 4.325e-49 183.0 2AP1V@1|root,31E35@2|Bacteria,1QBCQ@1224|Proteobacteria,1T6XJ@1236|Gammaproteobacteria,1X8D3@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3668627_8 522373.Smlt1558 1.312e-146 466.0 COG1024@1|root,COG1024@2|Bacteria,1MWZC@1224|Proteobacteria,1S32J@1236|Gammaproteobacteria,1X3PB@135614|Xanthomonadales 135614|Xanthomonadales I Belongs to the enoyl-CoA hydratase isomerase family - - 4.2.1.17 ko:K01715 ko00650,ko01200,map00650,map01200 - R03026 RC00831 ko00000,ko00001,ko01000 - - - ECH_1 SRR25158195_k127_3668627_10 522373.Smlt1559 9.471e-139 443.0 COG0545@1|root,COG0545@2|Bacteria,1RDA1@1224|Proteobacteria,1RPMP@1236|Gammaproteobacteria,1X5YQ@135614|Xanthomonadales 135614|Xanthomonadales M Peptidyl-prolyl cis-trans VL23_22180 - 5.2.1.8 ko:K01802,ko:K03773 - - - - ko00000,ko01000,ko03110 - - - FKBP_C,FKBP_N SRR25158195_k127_3668627_7 1429851.X548_05335 2.607e-157 503.0 COG0494@1|root,COG3313@1|root,COG0494@2|Bacteria,COG3313@2|Bacteria,1RD2C@1224|Proteobacteria,1SA4Q@1236|Gammaproteobacteria,1X3T9@135614|Xanthomonadales 135614|Xanthomonadales L DNA mismatch repair protein MutT - - - - - - - - - - - - DUF1289,NUDIX SRR25158195_k127_3668627_5 391008.Smal_1319 1.455e-174 556.0 COG2897@1|root,COG2897@2|Bacteria,1MW4B@1224|Proteobacteria,1RSQ3@1236|Gammaproteobacteria,1X4I1@135614|Xanthomonadales 135614|Xanthomonadales P Sulfurtransferase sseA - 2.8.1.1,2.8.1.2 ko:K01011 ko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122 - R01931,R03105,R03106 RC00214 ko00000,ko00001,ko01000 - - - Rhodanese SRR25158195_k127_3668627_11 522373.Smlt1562 1.351e-107 349.0 COG3023@1|root,COG3023@2|Bacteria,1N0IM@1224|Proteobacteria,1S959@1236|Gammaproteobacteria,1X602@135614|Xanthomonadales 135614|Xanthomonadales V N-acetylmuramoyl-L-alanine amidase - - 3.5.1.28 ko:K01447 - - R04112 RC00064,RC00141 ko00000,ko01000 - - - Amidase_2 SRR25158195_k127_3668627_12 522373.Smlt1563 5.011e-97 327.0 COG2945@1|root,COG2945@2|Bacteria,1RM5Q@1224|Proteobacteria,1S4TS@1236|Gammaproteobacteria,1X5YD@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - UPF0227 SRR25158195_k127_3668627_0 522373.Smlt1564 0.0 1419.0 COG0116@1|root,COG1092@1|root,COG0116@2|Bacteria,COG1092@2|Bacteria,1MUQM@1224|Proteobacteria,1RNMH@1236|Gammaproteobacteria,1X3S5@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA rlmL GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008990,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.173,2.1.1.264 ko:K12297 - - R07234 RC00003 ko00000,ko01000,ko03009 - - - Methyltrans_SAM,THUMP,UPF0020 SRR25158195_k127_3668627_15 522373.Smlt1565 2.251e-54 195.0 2DR6E@1|root,33AD4@2|Bacteria,1NHFR@1224|Proteobacteria,1SHRC@1236|Gammaproteobacteria,1X8QE@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3325) - - - - - - - - - - - - DUF3325 SRR25158195_k127_3668627_1 391008.Smal_1324 0.0 1037.0 COG3182@1|root,COG3182@2|Bacteria,1MVET@1224|Proteobacteria,1RNR9@1236|Gammaproteobacteria,1X4KJ@135614|Xanthomonadales 135614|Xanthomonadales S PepSY-associated TM region - - - - - - - - - - - - PepSY_TM SRR25158195_k127_3668627_13 522373.Smlt1567 6.31e-63 219.0 2DNWZ@1|root,32ZKY@2|Bacteria,1N8JR@1224|Proteobacteria,1SHD5@1236|Gammaproteobacteria,1XD4D@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3649) - - - - - - - - - - - - DUF3649 SRR25158195_k127_3668627_14 391008.Smal_1327 9.854e-56 195.0 COG2733@1|root,COG2733@2|Bacteria,1MX3G@1224|Proteobacteria,1RNR7@1236|Gammaproteobacteria,1X31F@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - DUF445 SRR25158195_k127_3668762_1 391008.Smal_2415 3.222e-143 454.0 COG3243@1|root,COG3243@2|Bacteria,1MU68@1224|Proteobacteria,1RN38@1236|Gammaproteobacteria,1X3MA@135614|Xanthomonadales 135614|Xanthomonadales I acid) synthase phbC - - ko:K03821 ko00650,map00650 - R04254 RC00004 ko00000,ko00001,ko01000 - - - Abhydrolase_1 SRR25158195_k127_3668762_0 522373.Smlt2965 1.208e-185 586.0 28KIX@1|root,2Z9Y0@2|Bacteria,1R3JX@1224|Proteobacteria,1T692@1236|Gammaproteobacteria,1XDIC@135614|Xanthomonadales 135614|Xanthomonadales S Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) - - - - - - - - - - - - PHA_synth_III_E SRR25158195_k127_3671045_1 522373.Smlt3163 5.277e-104 340.0 COG5587@1|root,COG5587@2|Bacteria,1R8B4@1224|Proteobacteria,1S1WW@1236|Gammaproteobacteria,1XD2G@135614|Xanthomonadales 135614|Xanthomonadales S Conserved hypothetical protein (DUF2461) - - - - - - - - - - - - DUF2461 SRR25158195_k127_3671045_0 522373.Smlt3162 7.827e-163 514.0 COG2925@1|root,COG2925@2|Bacteria,1MV0U@1224|Proteobacteria,1RM85@1236|Gammaproteobacteria,1X41G@135614|Xanthomonadales 135614|Xanthomonadales L Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates sbcB - 3.1.11.1 ko:K01141 ko03430,map03430 - - - ko00000,ko00001,ko01000,ko03400 - - - Exonuc_X-T_C,RNase_T SRR25158195_k127_367243_2 1300345.LF41_674 8.785e-127 409.0 COG0625@1|root,COG0625@2|Bacteria,1MXJD@1224|Proteobacteria,1RP12@1236|Gammaproteobacteria,1X2Y8@135614|Xanthomonadales 135614|Xanthomonadales O stringent starvation protein A sspA - - ko:K03599 - - - - ko00000,ko02000,ko03021 1.A.12.3.1 - - GST_C,GST_N,GST_N_3 SRR25158195_k127_367243_4 1385517.N800_09930 1.388e-109 359.0 COG2857@1|root,COG2857@2|Bacteria,1QFU2@1224|Proteobacteria,1RN4Y@1236|Gammaproteobacteria,1X4Q1@135614|Xanthomonadales 135614|Xanthomonadales C cytochrome petC - - ko:K00413 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002 - - - Cytochrom_C1 SRR25158195_k127_367243_0 1211114.ALIP01000044_gene2029 2.119e-256 792.0 COG1290@1|root,COG1290@2|Bacteria,1MV97@1224|Proteobacteria,1RNCP@1236|Gammaproteobacteria,1X3Q9@135614|Xanthomonadales 135614|Xanthomonadales C Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis petB - - ko:K00412 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002,ko03029 - - - Cytochrom_B_C,Cytochrome_B SRR25158195_k127_367243_5 913325.N799_01535 6.793e-106 353.0 COG0723@1|root,COG0723@2|Bacteria,1RAA2@1224|Proteobacteria,1RP9H@1236|Gammaproteobacteria,1X4TD@135614|Xanthomonadales 135614|Xanthomonadales C Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis petA - 1.10.2.2 ko:K00411 ko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016 M00151,M00152 - - ko00000,ko00001,ko00002,ko01000 - - - Rieske,UCR_Fe-S_N SRR25158195_k127_367243_3 913325.N799_01545 1.389e-117 384.0 COG0741@1|root,COG0741@2|Bacteria,1MZ4X@1224|Proteobacteria,1S28H@1236|Gammaproteobacteria,1X3DX@135614|Xanthomonadales 135614|Xanthomonadales M Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) yjbJ - - - - - - - - - - - DUF4124,SLT SRR25158195_k127_367243_1 1385515.N791_06565 1.851e-193 608.0 COG0621@1|root,COG0621@2|Bacteria,1MURS@1224|Proteobacteria,1RMD8@1236|Gammaproteobacteria,1X3HB@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine miaB - 2.8.4.3 ko:K06168 - - R10645,R10646,R10647 RC00003,RC00980,RC03221,RC03222 ko00000,ko01000,ko03016 - - - Radical_SAM,TRAM,UPF0004 SRR25158195_k127_3675212_1 1429851.X548_17220 9.676e-182 572.0 COG0204@1|root,COG0477@1|root,COG0204@2|Bacteria,COG2814@2|Bacteria,1MWDY@1224|Proteobacteria,1RRXF@1236|Gammaproteobacteria,1X3Z7@135614|Xanthomonadales 135614|Xanthomonadales I Acyltransferase aas - - - - - - - - - - - Acyltransferase,MFS_1 SRR25158195_k127_3675212_0 391008.Smal_3693 0.0 1331.0 COG1289@1|root,COG1289@2|Bacteria,1MWR1@1224|Proteobacteria,1RNIJ@1236|Gammaproteobacteria,1X5D8@135614|Xanthomonadales 135614|Xanthomonadales S membrane yccS - - - - - - - - - - - FUSC-like,FUSC_2 SRR25158195_k127_3675212_2 1429851.X548_17200 1.015e-132 423.0 COG4773@1|root,COG4773@2|Bacteria,1NZCG@1224|Proteobacteria,1T1NA@1236|Gammaproteobacteria,1X3J2@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_3679457_2 391008.Smal_1011 1.342e-173 544.0 COG0019@1|root,COG0527@1|root,COG0019@2|Bacteria,COG0527@2|Bacteria,1MUA6@1224|Proteobacteria,1SZXB@1236|Gammaproteobacteria,1X4T0@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the Orn Lys Arg decarboxylase class-II family lysA - 2.7.2.4,4.1.1.20 ko:K12526 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00017,M00018,M00526,M00527 R00451,R00480 RC00002,RC00043,RC00299 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,Orn_Arg_deC_N,Orn_DAP_Arg_deC SRR25158195_k127_3679457_3 1234364.AMSF01000063_gene2248 3.406e-169 543.0 COG1365@1|root,COG1365@2|Bacteria,1R62V@1224|Proteobacteria,1S2JY@1236|Gammaproteobacteria,1X5D9@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3679457_0 522373.Smlt1170 1.909e-288 889.0 COG0771@1|root,COG0771@2|Bacteria,1MVYD@1224|Proteobacteria,1RP25@1236|Gammaproteobacteria,1X37K@135614|Xanthomonadales 135614|Xanthomonadales M Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) murD - 6.3.2.9 ko:K01925 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R02783 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase_C,Mur_ligase_M SRR25158195_k127_3679457_5 391008.Smal_1014 1.509e-118 383.0 COG4282@1|root,COG4282@2|Bacteria,1RKVG@1224|Proteobacteria,1S7YZ@1236|Gammaproteobacteria 1236|Gammaproteobacteria G SMI1 / KNR4 family (SUKH-1) - - - - - - - - - - - - SMI1_KNR4 SRR25158195_k127_3679457_4 1429851.X548_03675 4.679e-161 511.0 COG0412@1|root,COG0412@2|Bacteria,1NKIB@1224|Proteobacteria,1S5DC@1236|Gammaproteobacteria,1XBZT@135614|Xanthomonadales 135614|Xanthomonadales Q dienelactone hydrolase - - - - - - - - - - - - DLH SRR25158195_k127_3679457_1 1429851.X548_03680 1.724e-200 626.0 COG0142@1|root,COG0142@2|Bacteria,1MUK6@1224|Proteobacteria,1RPR7@1236|Gammaproteobacteria,1X32F@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the FPP GGPP synthase family ispB - 2.5.1.90 ko:K02523 ko00900,ko01110,map00900,map01110 - R09248 RC00279 ko00000,ko00001,ko01000,ko01006 - - - polyprenyl_synt SRR25158195_k127_3679457_6 522373.Smlt1174 8.415e-102 333.0 COG0366@1|root,COG0366@2|Bacteria,1MVKX@1224|Proteobacteria,1RMSH@1236|Gammaproteobacteria,1X50G@135614|Xanthomonadales 135614|Xanthomonadales G alpha-glucosidase aglA - 3.2.1.20 ko:K01187 ko00052,ko00500,ko01100,map00052,map00500,map01100 - R00028,R00801,R00802,R06087,R06088 RC00028,RC00049,RC00077 ko00000,ko00001,ko01000 - GH31 - Alpha-amylase,DUF3459,Malt_amylase_C SRR25158195_k127_3681541_4 1429851.X548_08730 7.336e-77 273.0 COG3250@1|root,COG3250@2|Bacteria,1MXXM@1224|Proteobacteria,1RYMD@1236|Gammaproteobacteria,1X5PF@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 2 family - - 3.1.1.53 ko:K05970 - - - - ko00000,ko01000 - - - BetaGal_dom4_5,Glyco_hydro_2_N,SASA SRR25158195_k127_3681541_1 1429851.X548_08735 0.0 1169.0 COG3661@1|root,COG3661@2|Bacteria,1MXKA@1224|Proteobacteria,1RP0V@1236|Gammaproteobacteria,1X5RV@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 67 family aguA - 3.2.1.139 ko:K01235 - - - - ko00000,ko01000 - - - Glyco_hydro_67C,Glyco_hydro_67M,Glyco_hydro_67N SRR25158195_k127_3681541_2 1429851.X548_08740 1.129e-175 560.0 COG1609@1|root,COG1609@2|Bacteria,1MU1G@1224|Proteobacteria,1RMSP@1236|Gammaproteobacteria,1X42X@135614|Xanthomonadales 135614|Xanthomonadales K LacI family transcriptional regulator - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 SRR25158195_k127_3681541_0 1429851.X548_08745 0.0 1488.0 COG1472@1|root,COG1472@2|Bacteria,1MVIV@1224|Proteobacteria,1RMA0@1236|Gammaproteobacteria,1X38M@135614|Xanthomonadales 135614|Xanthomonadales G COG1472 Beta-glucosidase-related glycosidases celD - 3.2.1.21 ko:K05349 ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 - R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 ko00000,ko00001,ko01000 - GH3 - Glyco_hydro_3,Glyco_hydro_3_C SRR25158195_k127_3681541_3 1429851.X548_08750 1.45e-127 409.0 COG0477@1|root,COG0477@2|Bacteria,1NS3F@1224|Proteobacteria,1T1MQ@1236|Gammaproteobacteria,1X2ZE@135614|Xanthomonadales 135614|Xanthomonadales EGP Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - - - - - - - - - - Sugar_tr SRR25158195_k127_3684780_0 522373.Smlt3648 0.0 1104.0 COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,1RPM5@1236|Gammaproteobacteria,1X333@135614|Xanthomonadales 135614|Xanthomonadales I converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA fadE - - ko:K06445 ko00071,ko01100,ko01212,map00071,map01100,map01212 M00087 R01175,R01279,R03777,R03857,R03990,R04751,R04754 RC00052,RC00076 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_N,DUF1974 SRR25158195_k127_3684780_1 522373.Smlt3649 4.536e-91 306.0 COG2050@1|root,COG2050@2|Bacteria,1RDNY@1224|Proteobacteria,1SC2Y@1236|Gammaproteobacteria,1XD0W@135614|Xanthomonadales 135614|Xanthomonadales Q Domain of unknown function (DUF4442) - - - - - - - - - - - - DUF4442 SRR25158195_k127_3684780_2 1429851.X548_13970 3.55e-55 194.0 COG3759@1|root,COG3759@2|Bacteria,1MZ4F@1224|Proteobacteria,1S90R@1236|Gammaproteobacteria,1X7IR@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - ko:K08987 - - - - ko00000 - - - DUF1304 SRR25158195_k127_3687174_1 391008.Smal_2314 1.28e-123 397.0 COG2885@1|root,COG2913@1|root,COG2885@2|Bacteria,COG2913@2|Bacteria,1N4RD@1224|Proteobacteria,1S9YV@1236|Gammaproteobacteria,1X6RP@135614|Xanthomonadales 135614|Xanthomonadales JM OmpA family - - - - - - - - - - - - OmpA,SmpA_OmlA SRR25158195_k127_3687174_0 391008.Smal_2309 0.0 1026.0 COG0038@1|root,COG2239@1|root,COG0038@2|Bacteria,COG2239@2|Bacteria,1MV4K@1224|Proteobacteria,1RQZQ@1236|Gammaproteobacteria,1XC97@135614|Xanthomonadales 135614|Xanthomonadales P chloride channel clcB - - ko:K03281 - - - - ko00000 2.A.49 - - Voltage_CLC SRR25158195_k127_3687174_3 391008.Smal_2308 1.133e-31 123.0 COG4772@1|root,COG4772@2|Bacteria,1MWDG@1224|Proteobacteria,1RQA5@1236|Gammaproteobacteria,1X5QP@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K16091 - - - - ko00000,ko02000 1.B.14.1.14 - - Plug,TonB_dep_Rec SRR25158195_k127_3690308_0 391008.Smal_0649 3.953e-315 970.0 COG3127@1|root,COG3127@2|Bacteria,1MU9R@1224|Proteobacteria,1RM8Y@1236|Gammaproteobacteria,1X341@135614|Xanthomonadales 135614|Xanthomonadales Q ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX SRR25158195_k127_3692201_0 1157708.KB907461_gene1553 2.653e-81 271.0 COG1028@1|root,COG1028@2|Bacteria,1MWZE@1224|Proteobacteria,2VM9M@28216|Betaproteobacteria,4AGDM@80864|Comamonadaceae 28216|Betaproteobacteria IQ Enoyl-(Acyl carrier protein) reductase - - - - - - - - - - - - adh_short_C2 SRR25158195_k127_3692201_2 391008.Smal_3563 2.195e-59 210.0 COG2259@1|root,COG2259@2|Bacteria,1MZVP@1224|Proteobacteria,1S8UI@1236|Gammaproteobacteria,1X7J3@135614|Xanthomonadales 135614|Xanthomonadales S PFAM DoxX - - - ko:K15977 - - - - ko00000 - - - DoxX SRR25158195_k127_3692201_1 391008.Smal_3561 3.817e-71 245.0 2AH35@1|root,317CF@2|Bacteria,1N19X@1224|Proteobacteria,1SRYS@1236|Gammaproteobacteria,1XB0S@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3692201_7 391008.Smal_3560 2.91e-09 66.0 COG0625@1|root,COG0625@2|Bacteria,1NE6Z@1224|Proteobacteria,1RRET@1236|Gammaproteobacteria,1XC9N@135614|Xanthomonadales 135614|Xanthomonadales O Glutathione S-transferase, N-terminal domain - - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C_3,GST_N SRR25158195_k127_3692201_3 522373.Smlt2540 3.831e-53 190.0 COG0745@1|root,COG0745@2|Bacteria 522373.Smlt2540|- T phosphorelay signal transduction system - - - - - - - - - - - - - SRR25158195_k127_3692201_4 522373.Smlt2535 4.478e-41 163.0 COG2200@1|root,COG2200@2|Bacteria,1QUS7@1224|Proteobacteria,1T4NX@1236|Gammaproteobacteria,1XDA9@135614|Xanthomonadales 135614|Xanthomonadales T Sensors of blue-light using FAD - - - - - - - - - - - - BLUF SRR25158195_k127_3692201_5 925775.XVE_2549 8.969e-36 144.0 COG1801@1|root,COG1801@2|Bacteria,1MU7F@1224|Proteobacteria,1RSAG@1236|Gammaproteobacteria,1X3RA@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 SRR25158195_k127_3695038_0 391008.Smal_3355 1.436e-139 444.0 COG0784@1|root,COG4191@1|root,COG4251@1|root,COG0784@2|Bacteria,COG4191@2|Bacteria,COG4251@2|Bacteria,1QTVB@1224|Proteobacteria,1T1K3@1236|Gammaproteobacteria,1XD9Y@135614|Xanthomonadales 135614|Xanthomonadales T PAS fold - - 2.7.13.3 ko:K10819 - - - - ko00000,ko01000 - - - HATPase_c,HisKA,PAS_7,Response_reg,dCache_1 SRR25158195_k127_3695038_1 84531.JMTZ01000026_gene41 1.173e-23 110.0 29DUM@1|root,300SH@2|Bacteria,1QCRP@1224|Proteobacteria,1T8I2@1236|Gammaproteobacteria,1XARX@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3695038_2 391008.Smal_2352 6.655e-15 76.0 COG1216@1|root,COG1216@2|Bacteria,1R459@1224|Proteobacteria,1S0ZP@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Glycosyltransferase (GlcNAc) - - - - - - - - - - - - GlcNAc SRR25158195_k127_3695148_3 522373.Smlt3536 8.596e-85 282.0 COG0005@1|root,COG0005@2|Bacteria,1MUWW@1224|Proteobacteria,1RS0S@1236|Gammaproteobacteria,1X3NA@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the reversible phosphorylation of S-methyl-5'- thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1- phosphate. Involved in the breakdown of S-methyl-5'-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine deoD - 2.4.2.44 ko:K19696 ko00270,ko01100,map00270,map01100 - R09668 RC00063 ko00000,ko00001,ko01000 - - - PNP_UDP_1 SRR25158195_k127_3695148_2 1429851.X548_13465 1.68e-116 375.0 COG0634@1|root,COG0634@2|Bacteria,1NRT8@1224|Proteobacteria,1RNPQ@1236|Gammaproteobacteria,1X3NG@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively hpt - 2.4.2.8 ko:K00760 ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110 - R00190,R01132,R01229,R02142,R08237,R08238,R08245 RC00063,RC00122 ko00000,ko00001,ko01000 - - - Pribosyltran SRR25158195_k127_3695148_0 1429851.X548_13470 1.632e-200 628.0 COG1472@1|root,COG1472@2|Bacteria,1MVAJ@1224|Proteobacteria,1RMQF@1236|Gammaproteobacteria,1X389@135614|Xanthomonadales 135614|Xanthomonadales G Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides nagZ - 3.2.1.52 ko:K01207 ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501 M00628 R00022,R05963,R07809,R07810,R10831 RC00049 ko00000,ko00001,ko00002,ko01000 - - - Glyco_hydro_3 SRR25158195_k127_3695148_1 391008.Smal_2969 2.945e-125 402.0 COG2761@1|root,COG2761@2|Bacteria,1NXUB@1224|Proteobacteria,1S8Q2@1236|Gammaproteobacteria,1XC17@135614|Xanthomonadales 135614|Xanthomonadales Q DSBA-like thioredoxin domain - - - - - - - - - - - - DSBA SRR25158195_k127_3697525_1 522373.Smlt2559 5.148e-193 605.0 COG3659@1|root,COG3659@2|Bacteria,1QMC3@1224|Proteobacteria,1RSBU@1236|Gammaproteobacteria,1X531@135614|Xanthomonadales 135614|Xanthomonadales M Carbohydrate-selective porin rpfN - - ko:K07267 - - - - ko00000,ko02000 1.B.19.1 - - OprB SRR25158195_k127_3697525_0 391008.Smal_2032 1.798e-309 958.0 COG1299@1|root,COG1445@1|root,COG1299@2|Bacteria,COG1445@2|Bacteria,1MXFN@1224|Proteobacteria,1RMZC@1236|Gammaproteobacteria,1X40T@135614|Xanthomonadales 135614|Xanthomonadales G PTS system, fructose-specific fruA GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0015144,GO:0016020,GO:0016740,GO:0016772,GO:0016773,GO:0022804,GO:0022857,GO:0034219,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0090563,GO:0090582 2.7.1.202 ko:K02769,ko:K02770 ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060 M00273 R03232 RC00017,RC03206 ko00000,ko00001,ko00002,ko01000,ko02000 4.A.2.1 - - PTS_EIIC,PTS_IIB SRR25158195_k127_3697525_2 522373.Smlt2557 1.035e-46 169.0 COG1105@1|root,COG1105@2|Bacteria,1MVNW@1224|Proteobacteria,1RP6K@1236|Gammaproteobacteria,1X500@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the carbohydrate kinase PfkB family fruK GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0019200,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046835,GO:0071704 2.7.1.56 ko:K00882 ko00051,map00051 - R02071 RC00002,RC00017 ko00000,ko00001,ko01000 - - - PfkB SRR25158195_k127_3698887_1 391008.Smal_2029 3.093e-07 52.0 COG1609@1|root,COG1609@2|Bacteria,1MVUR@1224|Proteobacteria,1SZUT@1236|Gammaproteobacteria,1X4F4@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator fruR - - ko:K03435 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 SRR25158195_k127_3698887_0 522373.Smlt2556 0.0 1018.0 COG1080@1|root,COG1925@1|root,COG4668@1|root,COG1080@2|Bacteria,COG1925@2|Bacteria,COG4668@2|Bacteria,1MUT8@1224|Proteobacteria,1RN6R@1236|Gammaproteobacteria,1X33X@135614|Xanthomonadales 135614|Xanthomonadales G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) fruB - 2.7.1.202,2.7.3.9 ko:K02768,ko:K08483,ko:K11183 ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060 M00273 R03232 RC00017,RC03206 ko00000,ko00001,ko00002,ko01000,ko02000 4.A.2.1,8.A.7 - - PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C,PTS-HPr,PTS_EIIA_2 SRR25158195_k127_370001_3 522373.Smlt1226 2.586e-74 262.0 COG0331@1|root,COG0331@2|Bacteria,1PPIC@1224|Proteobacteria,1SG1U@1236|Gammaproteobacteria,1X7GE@135614|Xanthomonadales 135614|Xanthomonadales I Acyl transferase domain mdcH - 2.3.1.39 ko:K00645 ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212 M00082 R01626,R11671 RC00004,RC00039,RC02727 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyl_transf_1 SRR25158195_k127_370001_0 1429851.X548_04005 1.877e-126 410.0 COG1767@1|root,COG1767@2|Bacteria,1NB3R@1224|Proteobacteria,1T029@1236|Gammaproteobacteria,1X6TV@135614|Xanthomonadales 135614|Xanthomonadales H Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase mdcB - 2.4.2.52 ko:K13930 - - R09675 RC00049,RC00063 ko00000,ko01000 - - - CitG SRR25158195_k127_370001_4 340.xcc-b100_0593 3.464e-51 190.0 2BCNC@1|root,3268I@2|Bacteria,1NETW@1224|Proteobacteria,1SJ83@1236|Gammaproteobacteria,1X7GJ@135614|Xanthomonadales 135614|Xanthomonadales I Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme- A to the apo- acyl-carrier-protein of the malonate decarboxylase to yield holo- acyl-carrier-protein mdcG - 2.7.7.66 ko:K13934 - - R10706 - ko00000,ko01000 - - - MdcG SRR25158195_k127_370001_2 1429851.X548_04015 1.034e-118 385.0 COG4799@1|root,COG4799@2|Bacteria,1NRN3@1224|Proteobacteria,1SA1V@1236|Gammaproteobacteria,1X7S0@135614|Xanthomonadales 135614|Xanthomonadales I Malonate decarboxylase mdcE - 4.1.1.87 ko:K13933 - - - - ko00000,ko01000 - - - MdcE SRR25158195_k127_370001_1 1429851.X548_04020 5.189e-122 393.0 COG4799@1|root,COG4799@2|Bacteria,1PRAH@1224|Proteobacteria,1RNT2@1236|Gammaproteobacteria,1X3T6@135614|Xanthomonadales 135614|Xanthomonadales I Malonate decarboxylase mdcD - 4.1.1.87 ko:K13932 - - - - ko00000,ko01000 - - - Carboxyl_trans SRR25158195_k127_3700437_1 522373.Smlt3352 3.989e-206 642.0 COG1960@1|root,COG1960@2|Bacteria,1MU20@1224|Proteobacteria,1RNV1@1236|Gammaproteobacteria,1X364@135614|Xanthomonadales 135614|Xanthomonadales I acyl-coa dehydrogenase - - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_C,Acyl-CoA_dh_M,Acyl-CoA_dh_N,AcylCoA_DH_N SRR25158195_k127_3700437_2 522373.Smlt3354 9.311e-80 266.0 COG1403@1|root,COG1403@2|Bacteria,1MWEQ@1224|Proteobacteria,1S75Q@1236|Gammaproteobacteria,1X30U@135614|Xanthomonadales 135614|Xanthomonadales L endonuclease - - - - - - - - - - - - HNH_5 SRR25158195_k127_3700437_3 522373.Smlt3354 7.945e-58 200.0 COG1403@1|root,COG1403@2|Bacteria,1MWEQ@1224|Proteobacteria,1S75Q@1236|Gammaproteobacteria,1X30U@135614|Xanthomonadales 135614|Xanthomonadales L endonuclease - - - - - - - - - - - - HNH_5 SRR25158195_k127_3700437_0 1429851.X548_12390 2.011e-281 865.0 COG1154@1|root,COG1154@2|Bacteria,1MUSJ@1224|Proteobacteria,1RNQD@1236|Gammaproteobacteria,1X2YR@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) dxs - 2.2.1.7 ko:K01662 ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130 M00096 R05636 RC00032 ko00000,ko00001,ko00002,ko01000 - - - DXP_synthase_N,Transket_pyr,Transketolase_C SRR25158195_k127_3700802_3 1118235.CAJH01000023_gene1668 1.285e-102 333.0 COG2503@1|root,COG2503@2|Bacteria,1RB4N@1224|Proteobacteria,1SB1V@1236|Gammaproteobacteria,1X3JI@135614|Xanthomonadales 135614|Xanthomonadales S Acid phosphatase lppC - - - - - - - - - - - Acid_phosphat_B SRR25158195_k127_3700802_1 522373.Smlt0099 1.296e-140 448.0 COG0284@1|root,COG0284@2|Bacteria,1MW2C@1224|Proteobacteria,1RNJR@1236|Gammaproteobacteria,1X4ID@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) pyrF GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 ko:K01591 ko00240,ko01100,map00240,map01100 M00051 R00965 RC00409 ko00000,ko00001,ko00002,ko01000 - - - OMPdecase SRR25158195_k127_3700802_0 1429851.X548_19455 1.103e-145 464.0 COG5640@1|root,COG5640@2|Bacteria,1NFNT@1224|Proteobacteria,1RP2F@1236|Gammaproteobacteria 1236|Gammaproteobacteria M secreted trypsin-like serine protease - - 3.4.21.35 ko:K01325 ko04614,ko04961,map04614,map04961 - - - ko00000,ko00001,ko01000,ko01002,ko04147 - - - ASH,PA,Trypsin SRR25158195_k127_3700802_2 522373.Smlt0101 7.072e-140 448.0 2A4DN@1|root,30SZG@2|Bacteria,1PCJD@1224|Proteobacteria,1SXME@1236|Gammaproteobacteria,1X6DW@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3702211_0 391008.Smal_1523 5.321e-167 526.0 COG4191@1|root,COG4191@2|Bacteria,1MWR3@1224|Proteobacteria,1RMH4@1236|Gammaproteobacteria,1X43M@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase regS - 2.7.13.3 ko:K15011 ko02020,map02020 M00523 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA SRR25158195_k127_3702211_2 391008.Smal_1522 4.566e-108 362.0 COG4567@1|root,COG4567@2|Bacteria,1RD7J@1224|Proteobacteria,1S3PE@1236|Gammaproteobacteria,1X637@135614|Xanthomonadales 135614|Xanthomonadales T Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain regR - - ko:K15012 ko02020,map02020 M00523 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg SRR25158195_k127_3702211_1 522373.Smlt1783 9.662e-112 361.0 COG0166@1|root,COG0166@2|Bacteria,1MUFP@1224|Proteobacteria,1RNIT@1236|Gammaproteobacteria,1X3XZ@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the GPI family pgi - 5.3.1.9 ko:K01810 ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200 M00001,M00004,M00114 R02739,R02740,R03321 RC00376,RC00563 ko00000,ko00001,ko00002,ko01000,ko04147 - - - PGI SRR25158195_k127_3702411_5 1429851.X548_07635 2.381e-48 173.0 COG0664@1|root,COG0664@2|Bacteria,1MVGE@1224|Proteobacteria,1S5W9@1236|Gammaproteobacteria,1X68X@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - ko:K01420 - - - - ko00000,ko03000 - - - HTH_Crp_2,cNMP_binding SRR25158195_k127_3702411_1 522373.Smlt2158 2.965e-244 759.0 COG0498@1|root,COG0498@2|Bacteria,1MUWQ@1224|Proteobacteria,1RQ0H@1236|Gammaproteobacteria,1X541@135614|Xanthomonadales 135614|Xanthomonadales E Threonine synthase thrC - 4.2.3.1 ko:K01733 ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230 M00018 R01466,R05086 RC00017,RC00526 ko00000,ko00001,ko00002,ko01000 - - - PALP,Thr_synth_N SRR25158195_k127_3702411_3 391008.Smal_1750 2.506e-162 514.0 COG0083@1|root,COG0083@2|Bacteria,1MW8I@1224|Proteobacteria,1RMYR@1236|Gammaproteobacteria,1X3BS@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate thrB GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004413,GO:0006082,GO:0006520,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009088,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.1.39 ko:K00872 ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230 M00018 R01771 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - GHMP_kinases_C,GHMP_kinases_N SRR25158195_k127_3702411_0 522373.Smlt2156 0.0 1525.0 COG0460@1|root,COG0527@1|root,COG0460@2|Bacteria,COG0527@2|Bacteria,1MW3H@1224|Proteobacteria,1RN1G@1236|Gammaproteobacteria,1X4R3@135614|Xanthomonadales 135614|Xanthomonadales E homoserine dehydrogenase thrA - 1.1.1.3,2.7.2.4 ko:K12524 ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00017,M00018,M00526,M00527 R00480,R01773,R01775 RC00002,RC00043,RC00087 ko00000,ko00001,ko00002,ko01000 - - - AA_kinase,ACT,ACT_7,Homoserine_dh,NAD_binding_3 SRR25158195_k127_3702411_2 391008.Smal_1748 5.598e-188 590.0 COG0697@1|root,COG0697@2|Bacteria,1MW7P@1224|Proteobacteria,1RQ9F@1236|Gammaproteobacteria,1X355@135614|Xanthomonadales 135614|Xanthomonadales EG Multidrug DMT transporter permease - - - - - - - - - - - - EamA SRR25158195_k127_3702411_4 391008.Smal_1747 1.251e-87 291.0 COG2207@1|root,COG2207@2|Bacteria,1REAN@1224|Proteobacteria,1S65J@1236|Gammaproteobacteria,1X7P2@135614|Xanthomonadales 135614|Xanthomonadales K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - HTH_18 SRR25158195_k127_3709556_2 1179778.PMM47T1_08301 1.467e-39 149.0 COG1048@1|root,COG1048@2|Bacteria,1MU9T@1224|Proteobacteria,1RN5I@1236|Gammaproteobacteria 1236|Gammaproteobacteria C Catalyzes the isomerization of citrate to isocitrate via cis-aconitate acnD GO:0003674,GO:0003824,GO:0003994,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009060,GO:0009062,GO:0009987,GO:0015980,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017001,GO:0017144,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019752,GO:0032787,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0045333,GO:0046395,GO:0046459,GO:0055114,GO:0071704,GO:0072329,GO:0072350,GO:1901575 4.2.1.117,4.2.1.3 ko:K01681,ko:K20455 ko00020,ko00630,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173,M00740 R01324,R01325,R01900,R11263 RC00497,RC00498,RC00618,RC01152 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C SRR25158195_k127_3709556_0 1429851.X548_13780 6.604e-256 789.0 COG0372@1|root,COG0372@2|Bacteria,1MUKX@1224|Proteobacteria,1RNT1@1236|Gammaproteobacteria,1X397@135614|Xanthomonadales 135614|Xanthomonadales C also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity prpC - 2.3.3.5 ko:K01659 ko00640,map00640 - R00931 RC00004,RC00406,RC02827 ko00000,ko00001,ko01000 - - - Citrate_synt SRR25158195_k127_3709556_1 391008.Smal_3030 5.414e-89 294.0 COG2513@1|root,COG2513@2|Bacteria,1N4VT@1224|Proteobacteria,1RMR5@1236|Gammaproteobacteria,1X3JB@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate prpB - 4.1.3.30 ko:K03417 ko00640,map00640 - R00409 RC00286,RC00287 ko00000,ko00001,ko01000 - - - PEP_mutase SRR25158195_k127_3717659_1 365044.Pnap_2778 5.13e-57 211.0 COG3852@1|root,COG3852@2|Bacteria,1MVN6@1224|Proteobacteria,2VJN7@28216|Betaproteobacteria,4AA8Q@80864|Comamonadaceae 28216|Betaproteobacteria T Signal transduction histidine kinase, nitrogen specific ntrB - 2.7.13.3 ko:K07708 ko02020,map02020 M00497 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - HATPase_c,HisKA,PAS,PAS_4,PAS_9 SRR25158195_k127_3717659_2 365046.Rta_14430 9.535e-52 196.0 2BWQ4@1|root,32QZV@2|Bacteria,1MZQ9@1224|Proteobacteria,2VSNR@28216|Betaproteobacteria,4AEB9@80864|Comamonadaceae 28216|Betaproteobacteria - - - - - - - - - - - - - - DUF4124 SRR25158195_k127_3717659_0 365046.Rta_14420 3.488e-304 936.0 COG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2VHYE@28216|Betaproteobacteria,4AAV7@80864|Comamonadaceae 28216|Betaproteobacteria E TIGRFAM glutamine synthetase, type I glnA GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 ko:K01915,ko:K20712 ko00220,ko00250,ko00627,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00627,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253,R06988,R09284 RC00010,RC01754,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C,Gln-synt_N SRR25158195_k127_3720659_0 1429851.X548_13425 1.873e-204 638.0 COG1236@1|root,COG1236@2|Bacteria,1MV7U@1224|Proteobacteria,1RYA5@1236|Gammaproteobacteria,1X4G0@135614|Xanthomonadales 135614|Xanthomonadales J mRNA 3'-end processing factor - - - ko:K07577 - - - - ko00000 - - - - SRR25158195_k127_3720659_1 522373.Smlt3530 4.215e-121 402.0 COG1793@1|root,COG1793@2|Bacteria,1MV3S@1224|Proteobacteria,1RY5I@1236|Gammaproteobacteria,1X3ZC@135614|Xanthomonadales 135614|Xanthomonadales L Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA - - 6.5.1.1,6.5.1.6,6.5.1.7 ko:K10747 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00381,R00382,R10822,R10823 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N SRR25158195_k127_3729737_1 522373.Smlt2836 3.679e-92 304.0 COG0526@1|root,COG0526@2|Bacteria,1P5Y6@1224|Proteobacteria,1T8CU@1236|Gammaproteobacteria,1XAFY@135614|Xanthomonadales 135614|Xanthomonadales CO Thioredoxin-like - - - - - - - - - - - - Thioredoxin_8 SRR25158195_k127_3729737_3 522373.Smlt2837 8.908e-88 292.0 COG1321@1|root,COG1321@2|Bacteria,1RH2Z@1224|Proteobacteria,1S2NA@1236|Gammaproteobacteria,1X7CF@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator mntR - - ko:K11924 - - - - ko00000,ko03000 - - - Fe_dep_repr_C,Fe_dep_repress SRR25158195_k127_3729737_0 391008.Smal_2292 6.303e-258 799.0 COG1914@1|root,COG1914@2|Bacteria,1MW6X@1224|Proteobacteria,1RNA2@1236|Gammaproteobacteria,1X49J@135614|Xanthomonadales 135614|Xanthomonadales P H( )-stimulated, divalent metal cation uptake system mntH - - ko:K03322 - - - - ko00000,ko02000 2.A.55.2.6,2.A.55.3 - - Nramp SRR25158195_k127_3729737_5 756272.Plabr_3948 2.021e-05 52.0 COG3118@1|root,COG3118@2|Bacteria 2|Bacteria O belongs to the thioredoxin family trxA - 1.8.1.8 ko:K03671,ko:K03672 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko01000,ko03110 - - - Thioredoxin SRR25158195_k127_3729737_2 1429851.X548_10235 2.172e-90 301.0 COG0716@1|root,COG0716@2|Bacteria,1QSTJ@1224|Proteobacteria,1RWCI@1236|Gammaproteobacteria,1X6N2@135614|Xanthomonadales 135614|Xanthomonadales C flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group - - - - - - - - - - - - Flavodoxin_1,Flavodoxin_3 SRR25158195_k127_3729737_4 522373.Smlt2841 1.698e-23 99.0 COG0208@1|root,COG0208@2|Bacteria,1MWUS@1224|Proteobacteria,1RN2N@1236|Gammaproteobacteria,1X58S@135614|Xanthomonadales 135614|Xanthomonadales F Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides nrdB - 1.17.4.1 ko:K00526 ko00230,ko00240,ko01100,map00230,map00240,map01100 M00053 R02017,R02018,R02019,R02024 RC00613 ko00000,ko00001,ko00002,ko01000,ko03400 - - - Ribonuc_red_sm SRR25158195_k127_3730965_1 1429851.X548_19705 9.056e-150 476.0 COG1968@1|root,COG1968@2|Bacteria,1MX02@1224|Proteobacteria,1RQQT@1236|Gammaproteobacteria,1X39V@135614|Xanthomonadales 135614|Xanthomonadales V Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin uppP - 3.6.1.27 ko:K06153 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - BacA SRR25158195_k127_3730965_0 1429851.X548_19700 4.904e-160 509.0 COG3187@1|root,COG3187@2|Bacteria,1RE9X@1224|Proteobacteria,1T10T@1236|Gammaproteobacteria,1XD2K@135614|Xanthomonadales 135614|Xanthomonadales O Domain of unknown function (DUF4377) - - - - - - - - - - - - DUF4377,META SRR25158195_k127_3730965_2 1429851.X548_19690 5.208e-124 398.0 COG1881@1|root,COG1881@2|Bacteria,1N0Y4@1224|Proteobacteria,1RYVQ@1236|Gammaproteobacteria,1X4CS@135614|Xanthomonadales 135614|Xanthomonadales S phosphatidylethanolamine-binding protein - - - ko:K06910 - - - - ko00000 - - - PBP SRR25158195_k127_3730965_3 391008.Smal_0105 1.651e-16 78.0 COG0457@1|root,COG0457@2|Bacteria,1R8UZ@1224|Proteobacteria,1RQ7E@1236|Gammaproteobacteria,1X4WX@135614|Xanthomonadales 135614|Xanthomonadales S Tetratricopeptide repeats - - - - - - - - - - - - TPR_16,TPR_19,TPR_2,TPR_8 SRR25158195_k127_3749762_0 391008.Smal_3520 0.0 1143.0 COG1249@1|root,COG1249@2|Bacteria,1MU2U@1224|Proteobacteria,1RMFF@1236|Gammaproteobacteria,1X3MV@135614|Xanthomonadales 135614|Xanthomonadales C dehydrogenase lpdA - 1.8.1.4 ko:K00382 ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00036,M00307,M00532 R00209,R01221,R01698,R03815,R07618,R08549 RC00004,RC00022,RC00583,RC02742,RC02833,RC02834 br01601,ko00000,ko00001,ko00002,ko01000,ko04147 - - - Biotin_lipoyl,Pyr_redox_2,Pyr_redox_dim SRR25158195_k127_3749762_1 522373.Smlt4121 0.0 1000.0 COG0508@1|root,COG0508@2|Bacteria,1MU7K@1224|Proteobacteria,1RNPT@1236|Gammaproteobacteria,1X3PC@135614|Xanthomonadales 135614|Xanthomonadales C acetyltransferase component of pyruvate dehydrogenase complex aceF - 2.3.1.12 ko:K00627 ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200 M00307 R00209,R02569 RC00004,RC02742,RC02857 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,Biotin_lipoyl,E3_binding SRR25158195_k127_3749762_2 522373.Smlt4122 7.135e-94 310.0 COG3663@1|root,COG3663@2|Bacteria,1REPV@1224|Proteobacteria,1S9AV@1236|Gammaproteobacteria,1X809@135614|Xanthomonadales 135614|Xanthomonadales L DNA glycosylase - - - - - - - - - - - - UDG SRR25158195_k127_3749762_3 1429851.X548_16275 9.441e-85 282.0 COG3047@1|root,COG3047@2|Bacteria,1NUZJ@1224|Proteobacteria,1RRRC@1236|Gammaproteobacteria,1X600@135614|Xanthomonadales 135614|Xanthomonadales M membrane ompW3 - - ko:K07275 - - - - ko00000 - - - OmpW SRR25158195_k127_3754471_2 522373.Smlt2870 3.758e-36 138.0 COG3745@1|root,COG3745@2|Bacteria,1RG5W@1224|Proteobacteria,1T0GK@1236|Gammaproteobacteria,1XD0G@135614|Xanthomonadales 135614|Xanthomonadales U Pilus assembly protein - - - ko:K02279 - - - - ko00000,ko02035,ko02044 - - - RcpC,SAF SRR25158195_k127_3754471_0 522373.Smlt2871 2.885e-267 826.0 COG4964@1|root,COG4964@2|Bacteria,1MV8G@1224|Proteobacteria,1RQ4U@1236|Gammaproteobacteria,1X59M@135614|Xanthomonadales 135614|Xanthomonadales U Belongs to the GSP D family - - - ko:K02280 - - - - ko00000,ko02035,ko02044 - - - Secretin,T2SS-T3SS_pil_N SRR25158195_k127_3754471_1 522373.Smlt2872 3.441e-77 259.0 COG4963@1|root,COG4963@2|Bacteria,1R5SM@1224|Proteobacteria,1RRFI@1236|Gammaproteobacteria,1X5S5@135614|Xanthomonadales 135614|Xanthomonadales U COG4963 Flp pilus assembly protein, ATPase CpaE - - - ko:K02282 - - - - ko00000,ko02035,ko02044 - - - TadZ_N SRR25158195_k127_3756357_1 1429851.X548_03545 9.779e-126 405.0 COG3128@1|root,COG3128@2|Bacteria,1MUI7@1224|Proteobacteria,1RQ0M@1236|Gammaproteobacteria,1X383@135614|Xanthomonadales 135614|Xanthomonadales S PkhD-type hydroxylase - GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0033554,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0098771 - ko:K07336 - - - - ko00000,ko01000 - - - 2OG-FeII_Oxy_3 SRR25158195_k127_3756357_0 1045855.DSC_05775 3.941e-214 674.0 COG4774@1|root,COG4774@2|Bacteria,1MV0X@1224|Proteobacteria,1RN3C@1236|Gammaproteobacteria,1X38Y@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K16090 - - - - ko00000,ko02000 1.B.14.1.11 - - Plug,TonB_dep_Rec SRR25158195_k127_3758635_2 391008.Smal_3297 1.706e-73 248.0 2DNPN@1|root,32YG3@2|Bacteria,1N9YB@1224|Proteobacteria,1SE1E@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Protein of unknown function (DUF2867) - - - - - - - - - - - - DUF2867 SRR25158195_k127_3758635_1 391008.Smal_3296 3.061e-128 412.0 2EDP8@1|root,337IX@2|Bacteria,1NFNH@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_3758635_0 522373.Smlt3879 4.951e-162 511.0 COG1028@1|root,COG1028@2|Bacteria,1MUSQ@1224|Proteobacteria,1RQQ9@1236|Gammaproteobacteria,1X32T@135614|Xanthomonadales 135614|Xanthomonadales IQ dehydrogenase - - - ko:K13775 ko00281,map00281 - R08087,R08096,R10125,R10126 RC00080,RC00087 ko00000,ko00001 - - - adh_short,adh_short_C2 SRR25158195_k127_3763133_4 522373.Smlt0954 2.466e-104 340.0 COG0604@1|root,COG0604@2|Bacteria,1MU4N@1224|Proteobacteria,1RNSV@1236|Gammaproteobacteria,1X3D6@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily - - 1.6.5.5 ko:K00344 - - - - ko00000,ko01000 - - - ADH_N,ADH_zinc_N_2 SRR25158195_k127_3763133_1 391008.Smal_0798 2.879e-124 401.0 COG2364@1|root,COG2364@2|Bacteria,1QZWW@1224|Proteobacteria,1RPKT@1236|Gammaproteobacteria,1X7F4@135614|Xanthomonadales 135614|Xanthomonadales S Membrane - - - - - - - - - - - - - SRR25158195_k127_3763133_0 522373.Smlt0952 0.0 1308.0 COG0446@1|root,COG1902@1|root,COG0446@2|Bacteria,COG1902@2|Bacteria,1MVE0@1224|Proteobacteria,1RNM8@1236|Gammaproteobacteria,1X445@135614|Xanthomonadales 135614|Xanthomonadales C 2,4-dienoyl-coa reductase fadH - 1.3.1.34 ko:K00219 - - - - ko00000,ko01000 - - - Oxidored_FMN,Pyr_redox_2 SRR25158195_k127_3763133_3 522373.Smlt0951 5.945e-105 344.0 COG3773@1|root,COG3773@2|Bacteria,1NK5C@1224|Proteobacteria,1T0PX@1236|Gammaproteobacteria,1X5ZI@135614|Xanthomonadales 135614|Xanthomonadales M Cell Wall VL23_13080 - - - - - - - - - - - Hydrolase_2 SRR25158195_k127_3763133_2 1429851.X548_02535 2.686e-114 374.0 COG0625@1|root,COG0625@2|Bacteria,1MY47@1224|Proteobacteria,1RRI3@1236|Gammaproteobacteria,1XCI4@135614|Xanthomonadales 135614|Xanthomonadales O Glutathione S-transferase gst - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C,GST_N SRR25158195_k127_3785467_8 391008.Smal_1286 5.242e-87 287.0 COG1846@1|root,COG1846@2|Bacteria,1N7BV@1224|Proteobacteria,1SB03@1236|Gammaproteobacteria,1X85X@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional - - - - - - - - - - - - MarR SRR25158195_k127_3785467_2 522373.Smlt1528 6.135e-283 873.0 COG1538@1|root,COG1538@2|Bacteria,1MUZZ@1224|Proteobacteria,1RQEP@1236|Gammaproteobacteria,1X3VF@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane efflux protein mdtP - - - - - - - - - - - OEP SRR25158195_k127_3785467_3 391008.Smal_1288 7.466e-234 726.0 COG1566@1|root,COG1566@2|Bacteria,1MU7I@1224|Proteobacteria,1RMAD@1236|Gammaproteobacteria,1X3U7@135614|Xanthomonadales 135614|Xanthomonadales V Multidrug resistance efflux pump emrA - - ko:K03543 - M00701 - - ko00000,ko00002,ko02000 8.A.1.1 - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 SRR25158195_k127_3785467_1 1429851.X548_05170 0.0 1023.0 COG0477@1|root,COG2814@2|Bacteria,1MU1I@1224|Proteobacteria,1RNTG@1236|Gammaproteobacteria,1X4BB@135614|Xanthomonadales 135614|Xanthomonadales EGP major facilitator superfamily emrB - - ko:K03446 - M00701 - - ko00000,ko00002,ko02000 2.A.1.3 - - MFS_1 SRR25158195_k127_3785467_4 391008.Smal_1291 6.909e-158 503.0 COG0583@1|root,COG0583@2|Bacteria,1N3XX@1224|Proteobacteria,1RR3S@1236|Gammaproteobacteria,1X6W1@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_3785467_5 391008.Smal_1292 1.933e-132 429.0 COG0730@1|root,COG0730@2|Bacteria,1MWAN@1224|Proteobacteria,1S158@1236|Gammaproteobacteria,1XBZ0@135614|Xanthomonadales 135614|Xanthomonadales S Sulfite exporter TauE/SafE - - - ko:K07090 - - - - ko00000 - - - TauE SRR25158195_k127_3785467_0 522373.Smlt1534 0.0 1595.0 COG0557@1|root,COG0557@2|Bacteria,1MUS6@1224|Proteobacteria,1RMQE@1236|Gammaproteobacteria,1X3WG@135614|Xanthomonadales 135614|Xanthomonadales J 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs rnr - - ko:K12573 ko03018,map03018 - - - ko00000,ko00001,ko01000,ko03016,ko03019 - - - OB_RNB,RNB,S1 SRR25158195_k127_3785467_7 391008.Smal_1294 5.177e-103 335.0 COG3791@1|root,COG3791@2|Bacteria,1N3P3@1224|Proteobacteria,1S57G@1236|Gammaproteobacteria,1XCZP@135614|Xanthomonadales 135614|Xanthomonadales S Glutathione-dependent formaldehyde-activating enzyme - - - - - - - - - - - - GFA SRR25158195_k127_3785467_6 522373.Smlt1536 3.044e-114 371.0 COG0566@1|root,COG0566@2|Bacteria,1MWCM@1224|Proteobacteria,1RN2F@1236|Gammaproteobacteria,1X3TR@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the ribose of guanosine 2251 in 23S rRNA rlmB GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.185 ko:K03218 - - - - ko00000,ko01000,ko03009 - - - SpoU_methylase,SpoU_sub_bind SRR25158195_k127_378897_2 391008.Smal_1766 2.381e-33 130.0 COG0837@1|root,COG0837@2|Bacteria,1MVFI@1224|Proteobacteria,1RNUY@1236|Gammaproteobacteria,1X2YT@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the bacterial glucokinase family - - 2.7.1.2 ko:K00845 ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200 M00001,M00549 R00299,R01600,R01786 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Glucokinase SRR25158195_k127_378897_0 522373.Smlt2170 0.0 1047.0 COG1409@1|root,COG1409@2|Bacteria,1N44U@1224|Proteobacteria,1RY17@1236|Gammaproteobacteria,1X3WN@135614|Xanthomonadales 135614|Xanthomonadales S calcineurin phosphoesterase - - - - - - - - - - - - Metallophos,MetallophosC,MetallophosN SRR25158195_k127_378897_1 391008.Smal_1763 1.449e-96 317.0 COG0139@1|root,COG0140@1|root,COG0139@2|Bacteria,COG0140@2|Bacteria,1MW67@1224|Proteobacteria,1RMV4@1236|Gammaproteobacteria,1X4HM@135614|Xanthomonadales 135614|Xanthomonadales E Histidine biosynthesis bifunctional protein HisIE hisI - 3.5.4.19,3.6.1.31 ko:K11755 ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230 M00026 R04035,R04037 RC00002,RC01055 ko00000,ko00001,ko00002,ko01000 - - - PRA-CH,PRA-PH SRR25158195_k127_378935_0 522373.Smlt0416 5.153e-285 878.0 COG0739@1|root,COG0739@2|Bacteria,1MVTF@1224|Proteobacteria,1RM7S@1236|Gammaproteobacteria,1X3R2@135614|Xanthomonadales 135614|Xanthomonadales M membrane - - - - - - - - - - - - OapA,Peptidase_M23 SRR25158195_k127_378935_1 391008.Smal_0300 1.914e-231 718.0 COG0162@1|root,COG0162@2|Bacteria,1MVUQ@1224|Proteobacteria,1RPKC@1236|Gammaproteobacteria,1X3S4@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) tyrS GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 ko:K01866 ko00970,map00970 M00359,M00360 R02918 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - S4,tRNA-synt_1b SRR25158195_k127_3812276_4 522373.Smlt0800 2.142e-127 410.0 COG2755@1|root,COG2755@2|Bacteria,1RCXZ@1224|Proteobacteria,1S3QU@1236|Gammaproteobacteria,1X5YJ@135614|Xanthomonadales 135614|Xanthomonadales E COG2755 Lysophospholipase L1 and related esterases - - 3.1.1.5 ko:K10804 ko01040,map01040 - - - ko00000,ko00001,ko01000,ko01004 - - - Lipase_GDSL_2 SRR25158195_k127_3812276_1 522373.Smlt0801 1.313e-155 494.0 COG0745@1|root,COG0745@2|Bacteria,1RA00@1224|Proteobacteria,1S23N@1236|Gammaproteobacteria,1X3BY@135614|Xanthomonadales 135614|Xanthomonadales K Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - - - - - - - - - - Response_reg,Trans_reg_C SRR25158195_k127_3812276_0 391008.Smal_0653 2.78e-266 821.0 COG0642@1|root,COG0642@2|Bacteria,1R54G@1224|Proteobacteria,1RWXF@1236|Gammaproteobacteria,1X4MP@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA SRR25158195_k127_3812276_3 522373.Smlt0803 9.7e-132 422.0 COG2755@1|root,COG2755@2|Bacteria,1RBFJ@1224|Proteobacteria,1SEW9@1236|Gammaproteobacteria,1X5ZC@135614|Xanthomonadales 135614|Xanthomonadales E GDSL-like Lipase/Acylhydrolase family - - - - - - - - - - - - Lipase_GDSL_2 SRR25158195_k127_3812276_5 522373.Smlt0804 6.182e-76 256.0 COG0818@1|root,COG0818@2|Bacteria,1MZ3Q@1224|Proteobacteria,1S92I@1236|Gammaproteobacteria,1X70R@135614|Xanthomonadales 135614|Xanthomonadales M Recycling of diacylglycerol produced during the turnover of membrane phospholipid dgkA - 2.7.1.107 ko:K00901 ko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231 - R02240 RC00002,RC00017 ko00000,ko00001,ko01000 - - - DAGK_prokar SRR25158195_k127_3812276_2 522373.Smlt0805 2.104e-138 442.0 COG0861@1|root,COG0861@2|Bacteria,1MWC9@1224|Proteobacteria,1T1GE@1236|Gammaproteobacteria,1X3KQ@135614|Xanthomonadales 135614|Xanthomonadales P membrane protein terc VL23_12390 - - - - - - - - - - - TerC SRR25158195_k127_3812276_6 522373.Smlt0806 1.07e-11 66.0 COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,1RM9G@1236|Gammaproteobacteria,1X4WQ@135614|Xanthomonadales 135614|Xanthomonadales EGP Major facilitator superfamily - - - ko:K19577 - - - - ko00000,ko02000 2.A.1.2.65 - - MFS_1 SRR25158195_k127_3813981_0 365046.Rta_20120 2.139e-237 736.0 COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2VGZE@28216|Betaproteobacteria,4A9R2@80864|Comamonadaceae 28216|Betaproteobacteria IQ PFAM AMP-dependent synthetase and ligase alkK - 6.2.1.44 ko:K20034 ko00920,map00920 - R10820 RC00004,RC00014 ko00000,ko00001,ko01000 - - - AMP-binding,AMP-binding_C SRR25158195_k127_3819866_1 391008.Smal_3351 5.144e-34 131.0 28N64@1|root,31Q3F@2|Bacteria,1NNPN@1224|Proteobacteria,1SHTM@1236|Gammaproteobacteria,1XAE7@135614|Xanthomonadales 135614|Xanthomonadales S Peptidase of plants and bacteria - - - - - - - - - - - - BSP SRR25158195_k127_3819866_0 522373.Smlt3940 0.0 1364.0 COG0280@1|root,COG0281@1|root,COG0280@2|Bacteria,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,1RN5F@1236|Gammaproteobacteria,1X2XY@135614|Xanthomonadales 135614|Xanthomonadales C Malic enzyme maeB - 1.1.1.40 ko:K00029 ko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200 M00169,M00172 R00216 RC00105 ko00000,ko00001,ko00002,ko01000 - - - Malate_DH,Malic_M,PTA_PTB,malic SRR25158195_k127_382357_3 391008.Smal_3211 7.118e-98 320.0 COG2110@1|root,COG2110@2|Bacteria,1RCWP@1224|Proteobacteria,1S3WJ@1236|Gammaproteobacteria,1X6PT@135614|Xanthomonadales 135614|Xanthomonadales S phosphatase homologous to the C-terminal domain of histone macroH2A1 - - - - - - - - - - - - Macro SRR25158195_k127_382357_2 522373.Smlt3796 8.486e-183 581.0 2DWB1@1|root,33ZD4@2|Bacteria,1NB14@1224|Proteobacteria,1T4A9@1236|Gammaproteobacteria,1XD9W@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_382357_1 391008.Smal_3213 9.289e-216 672.0 COG3588@1|root,COG3588@2|Bacteria,1MVFK@1224|Proteobacteria,1RQ57@1236|Gammaproteobacteria,1X34A@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the class I fructose-bisphosphate aldolase family - - 4.1.2.13 ko:K01623 ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00003,M00165,M00167 R01068,R01070,R01829,R02568 RC00438,RC00439,RC00603,RC00604 ko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147 - - - Glycolytic SRR25158195_k127_382357_0 391008.Smal_3214 3.54e-298 917.0 COG0469@1|root,COG0469@2|Bacteria,1MU21@1224|Proteobacteria,1RMW3@1236|Gammaproteobacteria,1X3J7@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the pyruvate kinase family pykA - 2.7.1.40 ko:K00873 ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230 M00001,M00002,M00049,M00050 R00200,R00430,R01138,R01858,R02320 RC00002,RC00015 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - PK,PK_C SRR25158195_k127_383100_3 522373.Smlt1430 2.168e-139 443.0 COG0588@1|root,COG0588@2|Bacteria,1MUVE@1224|Proteobacteria,1RNCX@1236|Gammaproteobacteria,1X3TJ@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily gpmA GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031 5.4.2.11 ko:K01834 ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230 M00001,M00002,M00003 R01518 RC00536 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - His_Phos_1 SRR25158195_k127_383100_1 522373.Smlt1431 0.0 1378.0 COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,1RNNA@1236|Gammaproteobacteria,1X4B6@135614|Xanthomonadales 135614|Xanthomonadales O peptidase - - - ko:K07386 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M13,Peptidase_M13_N SRR25158195_k127_383100_4 522373.Smlt1432 7.485e-114 370.0 COG2206@1|root,COG2206@2|Bacteria,1QW9I@1224|Proteobacteria,1S7KF@1236|Gammaproteobacteria,1X74J@135614|Xanthomonadales 135614|Xanthomonadales T HD domain - - - - - - - - - - - - HD,HD_5 SRR25158195_k127_383100_0 391008.Smal_1201 0.0 2218.0 COG1197@1|root,COG1197@2|Bacteria,1MUXG@1224|Proteobacteria,1RNCU@1236|Gammaproteobacteria,1X4J8@135614|Xanthomonadales 135614|Xanthomonadales L Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site mfd - - ko:K03723 ko03420,map03420 - - - ko00000,ko00001,ko01000,ko03400 - - - CarD_CdnL_TRCF,DEAD,Helicase_C,TRCF SRR25158195_k127_383100_5 1429851.X548_04730 2.701e-110 357.0 COG1670@1|root,COG1670@2|Bacteria,1N643@1224|Proteobacteria,1T1M3@1236|Gammaproteobacteria,1X6PC@135614|Xanthomonadales 135614|Xanthomonadales J Acyl-CoA synthetase YH67_06285 - - - - - - - - - - - Acetyltransf_1,Acetyltransf_3 SRR25158195_k127_383100_2 391008.Smal_1203 1.952e-177 558.0 COG2961@1|root,COG2961@2|Bacteria,1MWGA@1224|Proteobacteria,1RNI1@1236|Gammaproteobacteria,1X32Q@135614|Xanthomonadales 135614|Xanthomonadales S Specifically methylates the adenine in position 2030 of 23S rRNA rlmJ - 2.1.1.266 ko:K07115 - - - - ko00000,ko01000,ko03009 - - - RsmJ SRR25158195_k127_3835488_3 522373.Smlt4046 2.329e-223 692.0 COG0320@1|root,COG0320@2|Bacteria,1MVRD@1224|Proteobacteria,1RMAT@1236|Gammaproteobacteria,1X4DA@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives lipA GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 ko:K03644 ko00785,ko01100,map00785,map01100 - R07767,R07768 RC01978 ko00000,ko00001,ko01000 - - - LIAS_N,Radical_SAM SRR25158195_k127_3835488_5 391008.Smal_3443 1.563e-142 456.0 COG0321@1|root,COG0321@2|Bacteria,1MU6A@1224|Proteobacteria,1RMXQ@1236|Gammaproteobacteria,1X4H1@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate lipB GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 ko:K03801 ko00785,ko01100,map00785,map01100 - R07766,R07769 RC00039,RC00992,RC02867 ko00000,ko00001,ko01000 - - - BPL_LplA_LipB SRR25158195_k127_3835488_2 522373.Smlt4049 4.197e-231 716.0 COG3528@1|root,COG3528@2|Bacteria,1R601@1224|Proteobacteria,1RZP2@1236|Gammaproteobacteria,1XCMU@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized protein conserved in bacteria (DUF2219) - - - - - - - - - - - - DUF2219 SRR25158195_k127_3835488_0 522373.Smlt4050 3.049e-251 782.0 COG1686@1|root,COG1686@2|Bacteria,1MUU7@1224|Proteobacteria,1RMJA@1236|Gammaproteobacteria,1X3DH@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the peptidase S11 family dacC - 3.4.16.4 ko:K07258 ko00550,ko01100,map00550,map01100 - - - ko00000,ko00001,ko01000,ko01002,ko01011 - - - PBP5_C,Peptidase_S11 SRR25158195_k127_3835488_4 391008.Smal_3447 8.534e-218 687.0 COG0797@1|root,COG3087@1|root,COG0797@2|Bacteria,COG3087@2|Bacteria,1MZ8S@1224|Proteobacteria,1RMCG@1236|Gammaproteobacteria,1X3Q2@135614|Xanthomonadales 135614|Xanthomonadales M Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides rlpA - - ko:K03642 - - - - ko00000 - - - DPBB_1,SPOR SRR25158195_k127_3835488_1 1429851.X548_15890 8.996e-233 722.0 COG2951@1|root,COG2951@2|Bacteria,1MUZ3@1224|Proteobacteria,1RMQ6@1236|Gammaproteobacteria,1X40P@135614|Xanthomonadales 135614|Xanthomonadales M murein transglycosylase mltB - - ko:K08305 - - - - ko00000,ko01000,ko01011 - GH103 - SLT_2 SRR25158195_k127_3836922_0 391008.Smal_1836 4.059e-215 668.0 COG1048@1|root,COG1048@2|Bacteria,1MU9T@1224|Proteobacteria,1RN5I@1236|Gammaproteobacteria,1X3SP@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the isomerization of citrate to isocitrate via cis-aconitate acnA - 4.2.1.3 ko:K01681 ko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230 M00009,M00010,M00012,M00173,M00740 R01324,R01325,R01900 RC00497,RC00498,RC00618 br01601,ko00000,ko00001,ko00002,ko01000 - - - Aconitase,Aconitase_C SRR25158195_k127_3836922_3 1118235.CAJH01000009_gene537 1.378e-39 151.0 COG2161@1|root,COG2161@2|Bacteria,1Q9P5@1224|Proteobacteria,1TDD1@1236|Gammaproteobacteria,1X8XR@135614|Xanthomonadales 135614|Xanthomonadales D Antitoxin Phd_YefM, type II toxin-antitoxin system - - - - - - - - - - - - PhdYeFM_antitox SRR25158195_k127_3836922_2 1118235.CAJH01000009_gene538 3.413e-90 302.0 COG4185@1|root,COG4185@2|Bacteria,1RBEQ@1224|Proteobacteria,1T0I7@1236|Gammaproteobacteria,1XD0P@135614|Xanthomonadales 135614|Xanthomonadales S zeta toxin - - - - - - - - - - - - - SRR25158195_k127_3836922_1 391008.Smal_1835 1.605e-110 357.0 COG1292@1|root,COG1292@2|Bacteria,1MV0K@1224|Proteobacteria,1RP3E@1236|Gammaproteobacteria,1X4T6@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the BCCT transporter (TC 2.A.15) family - - - ko:K02168 - - - - ko00000,ko02000 2.A.15.1.3,2.A.15.1.4 - - BCCT SRR25158195_k127_3847087_0 391008.Smal_2567 0.0 1569.0 COG1506@1|root,COG1506@2|Bacteria,1N75C@1224|Proteobacteria,1RXY1@1236|Gammaproteobacteria,1X51F@135614|Xanthomonadales 135614|Xanthomonadales E Prolyl oligopeptidase family - - - - - - - - - - - - Peptidase_S9 SRR25158195_k127_3847087_4 522373.Smlt3129 1.687e-56 202.0 2CA0I@1|root,339X3@2|Bacteria,1R3I1@1224|Proteobacteria,1T68C@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_3847087_1 522373.Smlt3130 1.21e-164 518.0 COG1718@1|root,COG1718@2|Bacteria,1NNYA@1224|Proteobacteria,1T0PF@1236|Gammaproteobacteria,1X5W7@135614|Xanthomonadales 135614|Xanthomonadales DT Serine threonine protein kinase involved in cell cycle control - - - - - - - - - - - - - SRR25158195_k127_3847087_5 84531.JMTZ01000065_gene1891 2.16e-39 150.0 2CP0Z@1|root,32SI8@2|Bacteria,1RK5X@1224|Proteobacteria,1T6RI@1236|Gammaproteobacteria,1X7ZQ@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3037) - - - - - - - - - - - - DUF3037 SRR25158195_k127_3847087_6 1118235.CAJH01000024_gene1701 1.314e-36 144.0 COG1943@1|root,COG1943@2|Bacteria,1MZZT@1224|Proteobacteria,1S9JG@1236|Gammaproteobacteria,1X7MY@135614|Xanthomonadales 135614|Xanthomonadales L Transposase and inactivated derivatives - - - - - - - - - - - - Y1_Tnp SRR25158195_k127_3847087_2 391008.Smal_2577 1.044e-93 308.0 COG4993@1|root,COG4993@2|Bacteria,1MUQX@1224|Proteobacteria,1RN5D@1236|Gammaproteobacteria,1X42W@135614|Xanthomonadales 135614|Xanthomonadales G Glucose dehydrogenase gcd1 - 1.1.5.2 ko:K00117 ko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130 - R06620 RC00066 ko00000,ko00001,ko01000 - - - PQQ,PQQ_2 SRR25158195_k127_384835_2 1429851.X548_02105 1.794e-43 158.0 COG2151@1|root,COG2151@2|Bacteria,1MZ9Y@1224|Proteobacteria,1S36X@1236|Gammaproteobacteria,1X3XG@135614|Xanthomonadales 135614|Xanthomonadales S FeS assembly SUF system protein SufT - - - - - - - - - - - - FeS_assembly_P SRR25158195_k127_384835_0 522373.Smlt0860 3.904e-237 734.0 COG0115@1|root,COG0115@2|Bacteria,1MVB0@1224|Proteobacteria,1RSKJ@1236|Gammaproteobacteria,1XCGU@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids ilvE - 2.6.1.42 ko:K00826 ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00036,M00119,M00570 R01090,R01214,R02199,R10991 RC00006,RC00036 ko00000,ko00001,ko00002,ko01000,ko01007 - - - Aminotran_4 SRR25158195_k127_384835_1 522373.Smlt0861 4.873e-109 356.0 COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,1RNB8@1236|Gammaproteobacteria,1X484@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the peptidase S8 family - GO:0005575,GO:0005576 - ko:K14645 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002,ko03110 - - - PKD,PPC,P_proprotein,Peptidase_S8 SRR25158195_k127_3855668_14 1385517.N800_01470 8.341e-33 130.0 COG2902@1|root,COG2902@2|Bacteria,1MXNV@1224|Proteobacteria,1RQVZ@1236|Gammaproteobacteria,1X46R@135614|Xanthomonadales 135614|Xanthomonadales E glutamate dehydrogenase - - 1.4.1.2 ko:K15371 ko00220,ko00250,ko00430,ko00910,ko01100,map00220,map00250,map00430,map00910,map01100 - R00243 RC00006,RC02799 ko00000,ko00001,ko01000 - - - Bac_GDH,GDH_N SRR25158195_k127_3855668_2 1429851.X548_11520 1.184e-238 741.0 COG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,1RMMJ@1236|Gammaproteobacteria,1X2XI@135614|Xanthomonadales 135614|Xanthomonadales I acyl-CoA dehydrogenase acdA - - - - - - - - - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N SRR25158195_k127_3855668_5 391008.Smal_2610 5.136e-194 606.0 COG0500@1|root,COG0640@1|root,COG0640@2|Bacteria,COG2226@2|Bacteria,1NFSV@1224|Proteobacteria,1SC37@1236|Gammaproteobacteria,1XCHM@135614|Xanthomonadales 135614|Xanthomonadales KQ ArsR family transcriptional regulator - - - - - - - - - - - - HTH_5,Methyltransf_11 SRR25158195_k127_3855668_3 391008.Smal_2611 9.865e-223 692.0 COG0646@1|root,COG0646@2|Bacteria,1NPFY@1224|Proteobacteria,1RNIP@1236|Gammaproteobacteria,1X4UR@135614|Xanthomonadales 135614|Xanthomonadales E Methyltransferase - - 2.1.1.13 ko:K00548 ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230 M00017 R00946,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - S-methyl_trans SRR25158195_k127_3855668_0 522373.Smlt3177 0.0 1717.0 COG1410@1|root,COG1410@2|Bacteria,1MV6G@1224|Proteobacteria,1RMYD@1236|Gammaproteobacteria,1X36Z@135614|Xanthomonadales 135614|Xanthomonadales E 5-methyltetrahydrofolate--homocysteine methyltransferase metH - 2.1.1.13 ko:K00548 ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230 M00017 R00946,R09365 RC00035,RC00113,RC01241 ko00000,ko00001,ko00002,ko01000 - - - B12-binding,B12-binding_2,Met_synt_B12,Pterin_bind,S-methyl_trans SRR25158195_k127_3855668_9 522373.Smlt3179 9.065e-116 375.0 COG3122@1|root,COG3122@2|Bacteria,1P4D6@1224|Proteobacteria,1SGUC@1236|Gammaproteobacteria,1X2Y4@135614|Xanthomonadales 135614|Xanthomonadales S Nucleoprotein polynucleotide-associated enzyme - - - ko:K09912 - - - - ko00000 - - - DUF2058 SRR25158195_k127_3855668_13 522373.Smlt3179A 3.511e-38 145.0 COG2900@1|root,COG2900@2|Bacteria,1NGFM@1224|Proteobacteria,1SGAM@1236|Gammaproteobacteria,1X8AY@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the SlyX family slyX - - ko:K03745 - - - - ko00000 - - - SlyX SRR25158195_k127_3855668_1 522373.Smlt3181 1.877e-283 874.0 COG1004@1|root,COG1004@2|Bacteria,1MW5U@1224|Proteobacteria,1RMVW@1236|Gammaproteobacteria,1X4NT@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the UDP-glucose GDP-mannose dehydrogenase family ugd - 1.1.1.22 ko:K00012 ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100 M00014,M00129,M00361,M00362 R00286 RC00291 ko00000,ko00001,ko00002,ko01000 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N SRR25158195_k127_3855668_4 522373.Smlt3182 5.161e-211 657.0 COG0545@1|root,COG0545@2|Bacteria,1RDA1@1224|Proteobacteria,1RPMP@1236|Gammaproteobacteria,1X4MM@135614|Xanthomonadales 135614|Xanthomonadales O peptidylprolyl - - 5.2.1.8 ko:K03772 - - - - ko00000,ko01000,ko03110 - - - FKBP_C,FKBP_N SRR25158195_k127_3855668_11 522373.Smlt3183 1.896e-49 176.0 COG0386@1|root,COG0386@2|Bacteria,1RD1R@1224|Proteobacteria,1S425@1236|Gammaproteobacteria,1XCMA@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the glutathione peroxidase family - - 1.11.1.9 ko:K00432 ko00480,ko00590,ko04918,map00480,map00590,map04918 - R00274,R07034,R07035 RC00011,RC00982 ko00000,ko00001,ko01000 - - - GSHPx SRR25158195_k127_3855668_12 522373.Smlt3183 3.843e-48 177.0 COG0386@1|root,COG0386@2|Bacteria,1RD1R@1224|Proteobacteria,1S425@1236|Gammaproteobacteria,1XCMA@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the glutathione peroxidase family - - 1.11.1.9 ko:K00432 ko00480,ko00590,ko04918,map00480,map00590,map04918 - R00274,R07034,R07035 RC00011,RC00982 ko00000,ko00001,ko01000 - - - GSHPx SRR25158195_k127_3855668_10 863365.XHC_1837 9.255e-66 235.0 COG1725@1|root,COG1725@2|Bacteria,1MZG9@1224|Proteobacteria,1S993@1236|Gammaproteobacteria,1X6MY@135614|Xanthomonadales 135614|Xanthomonadales K GntR family transcriptional regulator - - - ko:K07979 - - - - ko00000,ko03000 - - - GntR SRR25158195_k127_3855668_7 391008.Smal_2621 1.26e-171 542.0 COG1131@1|root,COG1131@2|Bacteria,1R3XF@1224|Proteobacteria,1S0MM@1236|Gammaproteobacteria,1X3B4@135614|Xanthomonadales 135614|Xanthomonadales V abc transporter atp-binding protein nodI - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran SRR25158195_k127_3855668_6 522373.Smlt3187 3.109e-192 603.0 2E7DT@1|root,331WV@2|Bacteria,1N62R@1224|Proteobacteria,1SB2G@1236|Gammaproteobacteria,1XD16@135614|Xanthomonadales 135614|Xanthomonadales - - - - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - - SRR25158195_k127_3855668_8 522373.Smlt3188 2.179e-127 412.0 COG3595@1|root,COG3595@2|Bacteria,1RI1P@1224|Proteobacteria,1RRZW@1236|Gammaproteobacteria,1X68A@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - DUF4097 SRR25158195_k127_3856758_1 522373.Smlt0861 2.139e-237 736.0 COG1404@1|root,COG1404@2|Bacteria,1MU3S@1224|Proteobacteria,1RNB8@1236|Gammaproteobacteria,1X484@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the peptidase S8 family - GO:0005575,GO:0005576 - ko:K14645 ko02024,map02024 - - - ko00000,ko00001,ko01000,ko01002,ko03110 - - - PKD,PPC,P_proprotein,Peptidase_S8 SRR25158195_k127_3856758_3 391008.Smal_0713 5.346e-98 323.0 COG0252@1|root,COG0252@2|Bacteria,1RHAW@1224|Proteobacteria,1S5WS@1236|Gammaproteobacteria,1X5DN@135614|Xanthomonadales 135614|Xanthomonadales EJ asparaginase VL23_12675 - 3.5.1.1 ko:K01424 ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110 - R00485 RC00010,RC02798 ko00000,ko00001,ko01000 - - - Asparaginase SRR25158195_k127_3856758_4 391008.Smal_0714 3.844e-64 221.0 COG3308@1|root,COG3308@2|Bacteria,1QED2@1224|Proteobacteria,1TAZ3@1236|Gammaproteobacteria,1X8ZA@135614|Xanthomonadales 135614|Xanthomonadales S Predicted membrane protein (DUF2069) - - - - - - - - - - - - DUF2069 SRR25158195_k127_3856758_2 1429851.X548_02130 1.761e-121 390.0 COG0655@1|root,COG0655@2|Bacteria,1MW7N@1224|Proteobacteria,1S23B@1236|Gammaproteobacteria,1X4PZ@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the WrbA family wrbA - 1.6.5.2 ko:K03809 ko00130,ko01110,map00130,map01110 - R02964,R03643,R03816 RC00819 ko00000,ko00001,ko01000 - - - FMN_red SRR25158195_k127_3856758_0 1429851.X548_02135 8.211e-261 811.0 COG1295@1|root,COG1295@2|Bacteria,1QICW@1224|Proteobacteria,1RMKI@1236|Gammaproteobacteria,1X3UE@135614|Xanthomonadales 135614|Xanthomonadales S UPF0761 membrane protein rbn - - ko:K07058 - - - - ko00000 - - - Virul_fac_BrkB SRR25158195_k127_3866035_0 391008.Smal_1531 8.298e-267 821.0 COG0364@1|root,COG0364@2|Bacteria,1MUN0@1224|Proteobacteria,1RN76@1236|Gammaproteobacteria,1X49Y@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone zwf - 1.1.1.363,1.1.1.49 ko:K00036 ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230 M00004,M00006,M00008 R00835,R02736,R10907 RC00001,RC00066 ko00000,ko00001,ko00002,ko01000,ko04147 - - - G6PD_C,G6PD_N SRR25158195_k127_387106_5 522373.Smlt0608 1.444e-206 644.0 COG0179@1|root,COG0179@2|Bacteria,1MV0V@1224|Proteobacteria,1RNYV@1236|Gammaproteobacteria,1X4ZT@135614|Xanthomonadales 135614|Xanthomonadales Q 2-keto-4-pentenoate hydratase uptA - 3.7.1.2 ko:K16171 ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120 M00044 R01364 RC00326,RC00446 ko00000,ko00001,ko00002,ko01000 - - - FAA_hydrolase SRR25158195_k127_387106_8 522373.Smlt0609 8.453e-130 417.0 COG0625@1|root,COG0625@2|Bacteria,1RA4Y@1224|Proteobacteria,1S2I8@1236|Gammaproteobacteria,1X3PP@135614|Xanthomonadales 135614|Xanthomonadales O maleylacetoacetate isomerase uptB - 5.2.1.2 ko:K01800 ko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120 M00044 R03181 RC00867 ko00000,ko00001,ko00002,ko01000 - - - GST_C_2,GST_N,GST_N_3 SRR25158195_k127_387106_1 1429851.X548_00925 9.113e-254 791.0 COG1573@1|root,COG1573@2|Bacteria,1MW8T@1224|Proteobacteria,1RXYR@1236|Gammaproteobacteria,1X3MT@135614|Xanthomonadales 135614|Xanthomonadales L dna polymerase - - 3.2.2.27 ko:K21929 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - DUF4130,UDG SRR25158195_k127_387106_4 1442599.JAAN01000010_gene179 3.34e-208 653.0 COG4277@1|root,COG4277@2|Bacteria,1MVCV@1224|Proteobacteria,1RY4T@1236|Gammaproteobacteria,1X5TQ@135614|Xanthomonadales 135614|Xanthomonadales S Elongator protein 3, MiaB family, Radical SAM - - - - - - - - - - - - Radical_SAM SRR25158195_k127_387106_3 1429851.X548_00935 8.913e-225 731.0 COG5008@1|root,COG5008@2|Bacteria,1QTTX@1224|Proteobacteria,1RN0B@1236|Gammaproteobacteria,1X3FB@135614|Xanthomonadales 135614|Xanthomonadales NU twitching motility protein uptC - - ko:K02670 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - T2SSE SRR25158195_k127_387106_11 522373.Smlt0613 4.817e-63 220.0 2E41E@1|root,32YY1@2|Bacteria,1NGB3@1224|Proteobacteria,1T67N@1236|Gammaproteobacteria,1XDI7@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4398) - - - - - - - - - - - - DUF4398 SRR25158195_k127_387106_7 391008.Smal_0485 2.493e-148 480.0 COG2885@1|root,COG2885@2|Bacteria,1REH1@1224|Proteobacteria,1S4KP@1236|Gammaproteobacteria,1X61J@135614|Xanthomonadales 135614|Xanthomonadales M membrane uptE - - - - - - - - - - - OmpA SRR25158195_k127_387106_12 522373.Smlt0615 3.678e-43 158.0 COG2841@1|root,COG2841@2|Bacteria,1QB8P@1224|Proteobacteria,1T6SZ@1236|Gammaproteobacteria,1X83B@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF465) uptF - - - - - - - - - - - DUF465 SRR25158195_k127_387106_0 522373.Smlt0616 1.099e-295 909.0 COG0031@1|root,COG0517@1|root,COG0031@2|Bacteria,COG0517@2|Bacteria,1MUBE@1224|Proteobacteria,1RN6J@1236|Gammaproteobacteria,1X4GC@135614|Xanthomonadales 135614|Xanthomonadales E Cystathionine beta-synthase cysB - 4.2.1.22 ko:K01697 ko00260,ko00270,ko01100,ko01130,ko01230,map00260,map00270,map01100,map01130,map01230 M00035,M00338 R00891,R01290,R04942 RC00056,RC00069,RC00256,RC00489,RC01246 ko00000,ko00001,ko00002,ko01000 - - - CBS,PALP SRR25158195_k127_387106_2 522373.Smlt0617 6.516e-243 754.0 COG0626@1|root,COG0626@2|Bacteria,1MU57@1224|Proteobacteria,1RMCV@1236|Gammaproteobacteria,1X4AH@135614|Xanthomonadales 135614|Xanthomonadales E cystathionine - - 4.4.1.1 ko:K01758 ko00260,ko00270,ko00450,ko01100,ko01130,ko01230,map00260,map00270,map00450,map01100,map01130,map01230 M00338 R00782,R01001,R02408,R04770,R04930,R09366 RC00056,RC00069,RC00348,RC00382,RC00710,RC01209,RC01210,RC01245,RC02303 ko00000,ko00001,ko00002,ko01000,ko04147 - - - Cys_Met_Meta_PP SRR25158195_k127_387106_10 380358.XALC_2711 3.184e-108 377.0 COG0438@1|root,COG0438@2|Bacteria,1RF3D@1224|Proteobacteria,1S2YK@1236|Gammaproteobacteria,1X9JH@135614|Xanthomonadales 135614|Xanthomonadales M Glycosyl transferases group 1 wxcA - - - - - - - - - - - Glycos_transf_1 SRR25158195_k127_387106_9 1429851.X548_00970 2.768e-129 418.0 COG1682@1|root,COG1682@2|Bacteria,1N0X3@1224|Proteobacteria,1S0H9@1236|Gammaproteobacteria,1X60G@135614|Xanthomonadales 135614|Xanthomonadales U Transport permease protein wzm - - ko:K09690 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC2_membrane SRR25158195_k127_387106_6 1429851.X548_00975 7.271e-161 509.0 COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,1RN2T@1236|Gammaproteobacteria,1X3C5@135614|Xanthomonadales 135614|Xanthomonadales GM Wzt C-terminal domain - - - ko:K09691 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC_tran,Wzt_C SRR25158195_k127_3874370_10 522373.Smlt0919 9.711e-12 65.0 COG0199@1|root,COG0199@2|Bacteria,1MZDT@1224|Proteobacteria,1S62N@1236|Gammaproteobacteria,1X6WF@135614|Xanthomonadales 135614|Xanthomonadales J Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site rpsN GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02954 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S14 SRR25158195_k127_3874370_1 391008.Smal_0768 3.702e-112 362.0 COG0094@1|root,COG0094@2|Bacteria,1MUU9@1224|Proteobacteria,1RPE1@1236|Gammaproteobacteria,1X3RF@135614|Xanthomonadales 135614|Xanthomonadales J This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits rplE GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02931 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L5,Ribosomal_L5_C SRR25158195_k127_3874370_5 1118235.CAJH01000067_gene3603 6.419e-61 211.0 COG0198@1|root,COG0198@2|Bacteria,1MZQD@1224|Proteobacteria,1S973@1236|Gammaproteobacteria,1X6UR@135614|Xanthomonadales 135614|Xanthomonadales J One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit rplX GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02895 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - KOW,ribosomal_L24 SRR25158195_k127_3874370_3 1429851.X548_02385 3.97e-72 243.0 COG0093@1|root,COG0093@2|Bacteria,1RCWZ@1224|Proteobacteria,1S3Z3@1236|Gammaproteobacteria,1X6K2@135614|Xanthomonadales 135614|Xanthomonadales J Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome rplN GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - ko:K02874 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L14 SRR25158195_k127_3874370_8 391008.Smal_0765 3.294e-48 175.0 COG0186@1|root,COG0186@2|Bacteria,1MZIK@1224|Proteobacteria,1S8SS@1236|Gammaproteobacteria,1X7EI@135614|Xanthomonadales 135614|Xanthomonadales J One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA rpsQ GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02961 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S17 SRR25158195_k127_3874370_9 522373.Smlt0914 4.567e-29 118.0 COG0255@1|root,COG0255@2|Bacteria,1N6PR@1224|Proteobacteria,1SCBN@1236|Gammaproteobacteria,1X843@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the universal ribosomal protein uL29 family rpmC GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02904 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L29 SRR25158195_k127_3874370_2 1429851.X548_02370 7.024e-82 273.0 COG0197@1|root,COG0197@2|Bacteria,1RA0Z@1224|Proteobacteria,1S201@1236|Gammaproteobacteria,1X6EI@135614|Xanthomonadales 135614|Xanthomonadales J Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs rplP GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - ko:K02878 ko03010,map03010 M00178 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L16 SRR25158195_k127_3874370_0 391008.Smal_0762 1.669e-153 485.0 COG0092@1|root,COG0092@2|Bacteria,1MUAI@1224|Proteobacteria,1RN0P@1236|Gammaproteobacteria,1X304@135614|Xanthomonadales 135614|Xanthomonadales J Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation rpsC GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02982 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - KH_2,Ribosomal_S3_C SRR25158195_k127_3874370_4 522373.Smlt0911 9.908e-62 213.0 COG0091@1|root,COG0091@2|Bacteria,1RH0W@1224|Proteobacteria,1S5XT@1236|Gammaproteobacteria,1X6P6@135614|Xanthomonadales 135614|Xanthomonadales J The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome rplV GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - ko:K02890 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L22 SRR25158195_k127_3874370_7 522373.Smlt0910 6.646e-53 186.0 COG0185@1|root,COG0185@2|Bacteria,1RGYX@1224|Proteobacteria,1S5VT@1236|Gammaproteobacteria,1X7DW@135614|Xanthomonadales 135614|Xanthomonadales J Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA rpsS GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - ko:K02965 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S19 SRR25158195_k127_3874370_6 1118235.CAJH01000067_gene3595 8.034e-60 206.0 COG0090@1|root,COG0090@2|Bacteria,1MVTD@1224|Proteobacteria,1RMGR@1236|Gammaproteobacteria,1X3GB@135614|Xanthomonadales 135614|Xanthomonadales J One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity rplB GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02886 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L2,Ribosomal_L2_C SRR25158195_k127_3876159_1 522373.Smlt3439 5.28e-135 439.0 COG0412@1|root,COG0412@2|Bacteria,1N607@1224|Proteobacteria,1S53B@1236|Gammaproteobacteria,1X65I@135614|Xanthomonadales 135614|Xanthomonadales Q Dienelactone hydrolase - - 3.1.1.45 ko:K01061 ko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130 - R03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222 RC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686 ko00000,ko00001,ko01000 - - - DLH SRR25158195_k127_3876159_3 1429851.X548_12920 1.231e-88 293.0 COG0537@1|root,COG0537@2|Bacteria,1MZVD@1224|Proteobacteria,1S9D9@1236|Gammaproteobacteria,1X77M@135614|Xanthomonadales 135614|Xanthomonadales FG Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - - - - - - - - - - HIT SRR25158195_k127_3876159_4 522373.Smlt3441 1.879e-27 111.0 2ASNB@1|root,31I32@2|Bacteria,1QFS7@1224|Proteobacteria,1TD1Z@1236|Gammaproteobacteria,1X8TG@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3876159_2 522373.Smlt3442 5.747e-124 397.0 COG0717@1|root,COG0717@2|Bacteria,1MV2J@1224|Proteobacteria,1RMCD@1236|Gammaproteobacteria,1X34N@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis dcd - 3.5.4.13 ko:K01494 ko00240,ko01100,map00240,map01100 M00053 R00568,R02325 RC00074 ko00000,ko00001,ko00002,ko01000 - - - dUTPase SRR25158195_k127_3876159_0 391008.Smal_2870 2.93e-142 451.0 COG0489@1|root,COG0489@2|Bacteria,1MU7R@1224|Proteobacteria,1RMJF@1236|Gammaproteobacteria,1X4VI@135614|Xanthomonadales 135614|Xanthomonadales D Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP mrp - - ko:K03593 - - - - ko00000,ko03029,ko03036 - - - FeS_assembly_P,ParA SRR25158195_k127_3877283_2 1429851.X548_08730 4.603e-94 312.0 COG3250@1|root,COG3250@2|Bacteria,1MXXM@1224|Proteobacteria,1RYMD@1236|Gammaproteobacteria,1X5PF@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 2 family - - 3.1.1.53 ko:K05970 - - - - ko00000,ko01000 - - - BetaGal_dom4_5,Glyco_hydro_2_N,SASA SRR25158195_k127_3877283_1 1429851.X548_08725 0.0 1003.0 COG3507@1|root,COG3507@2|Bacteria,1NNX4@1224|Proteobacteria,1RYTM@1236|Gammaproteobacteria,1X3YP@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 43 family - - 3.2.1.37,3.2.1.55 ko:K01198,ko:K01209 ko00520,ko01100,map00520,map01100 - R01433,R01762 RC00467 ko00000,ko00001,ko01000 - GH43,GH51 - Glyco_hydro_43 SRR25158195_k127_3877283_0 1429851.X548_08720 0.0 1474.0 COG1472@1|root,COG1472@2|Bacteria,1MVIV@1224|Proteobacteria,1RMA0@1236|Gammaproteobacteria,1X4AX@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glycosyl hydrolase 3 family - - 3.2.1.21 ko:K05349 ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 - R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 ko00000,ko00001,ko01000 - GH3 - Fn3-like,Glyco_hydro_3,Glyco_hydro_3_C,PA14 SRR25158195_k127_3888269_0 522373.Smlt2831 8.53e-217 673.0 COG3239@1|root,COG3239@2|Bacteria,1QKDT@1224|Proteobacteria,1RQCX@1236|Gammaproteobacteria,1X49C@135614|Xanthomonadales 135614|Xanthomonadales I desaturase - - 1.14.19.3 ko:K00508 ko00591,ko01100,map00591,map01100 - R07063 RC00917 ko00000,ko00001,ko01000,ko01004 - - - FA_desaturase SRR25158195_k127_3888269_1 522373.Smlt2832 7.603e-132 422.0 COG1018@1|root,COG1018@2|Bacteria,1MY2Q@1224|Proteobacteria,1S01V@1236|Gammaproteobacteria,1X4DC@135614|Xanthomonadales 135614|Xanthomonadales C Oxidoreductase - - - - - - - - - - - - FAD_binding_6,Fer2,NAD_binding_1 SRR25158195_k127_3889545_7 1429851.X548_09860 3.394e-43 165.0 COG4541@1|root,COG4541@2|Bacteria,1N12Y@1224|Proteobacteria,1SDZA@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Branched-chain amino acid transport protein (AzlD) - - - - - - - - - - - - AzlD SRR25158195_k127_3889545_1 1429851.X548_09855 2.619e-137 439.0 COG1296@1|root,COG1296@2|Bacteria,1Q43G@1224|Proteobacteria,1S31F@1236|Gammaproteobacteria,1X957@135614|Xanthomonadales 135614|Xanthomonadales E AzlC protein - - - - - - - - - - - - AzlC SRR25158195_k127_3889545_4 391008.Smal_2221 4.334e-90 297.0 COG1522@1|root,COG1522@2|Bacteria,1MX7R@1224|Proteobacteria,1RPGA@1236|Gammaproteobacteria,1X6YF@135614|Xanthomonadales 135614|Xanthomonadales K helix_turn_helix ASNC type - - - - - - - - - - - - AsnC_trans_reg,HTH_24 SRR25158195_k127_3889545_3 391008.Smal_2220 7.446e-95 317.0 COG4773@1|root,COG4773@2|Bacteria,1N09E@1224|Proteobacteria,1SVIH@1236|Gammaproteobacteria,1X91C@135614|Xanthomonadales 135614|Xanthomonadales P Secretin and TonB N terminus short domain - - - - - - - - - - - - STN SRR25158195_k127_3889545_2 391008.Smal_2219 8.747e-98 322.0 COG1595@1|root,COG1595@2|Bacteria,1RHYH@1224|Proteobacteria,1SZ7C@1236|Gammaproteobacteria,1X8M4@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_3889545_0 522373.Smlt2749 3.747e-176 556.0 COG3712@1|root,COG3712@2|Bacteria,1N4W7@1224|Proteobacteria,1SPGC@1236|Gammaproteobacteria,1X7US@135614|Xanthomonadales 135614|Xanthomonadales PT Domain of unknown function (DUF4880) - - - - - - - - - - - - DUF4880,DUF4974,FecR SRR25158195_k127_3889545_6 522373.Smlt2748 1.051e-77 265.0 COG3039@1|root,COG3039@2|Bacteria,1NZIH@1224|Proteobacteria 1224|Proteobacteria L Transposase domain (DUF772) - - - ko:K07487 - - - - ko00000 - - - DUF772 SRR25158195_k127_3889545_5 391008.Smal_2216 1.553e-79 270.0 COG3039@1|root,COG3039@2|Bacteria,1P52J@1224|Proteobacteria 1224|Proteobacteria L Transposase - - - - - - - - - - - - - SRR25158195_k127_3889545_8 522373.Smlt2746 7.931e-39 147.0 COG2165@1|root,COG2165@2|Bacteria,1RDX2@1224|Proteobacteria,1S3VS@1236|Gammaproteobacteria,1X6M4@135614|Xanthomonadales 135614|Xanthomonadales U General secretion pathway protein xcsG - - ko:K02456 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - N_methyl,T2SSG SRR25158195_k127_3893190_0 522373.Smlt4082 0.0 1376.0 COG1770@1|root,COG1770@2|Bacteria,1MUED@1224|Proteobacteria,1RMSV@1236|Gammaproteobacteria,1X31I@135614|Xanthomonadales 135614|Xanthomonadales E peptidase ptrB - 3.4.21.83 ko:K01354 ko05142,ko05143,map05142,map05143 - - - ko00000,ko00001,ko01000,ko01002 - - - Peptidase_S9,Peptidase_S9_N SRR25158195_k127_3893190_4 1429851.X548_16045 5.624e-85 282.0 COG2832@1|root,COG2832@2|Bacteria,1N7BI@1224|Proteobacteria,1SCJZ@1236|Gammaproteobacteria,1X7HT@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - ko:K09790 - - - - ko00000 - - - DUF454 SRR25158195_k127_3893190_5 1094184.KWO_0103590 1.171e-06 54.0 2ASW1@1|root,31IBH@2|Bacteria,1QG0W@1224|Proteobacteria,1TDCR@1236|Gammaproteobacteria,1X8XN@135614|Xanthomonadales 135614|Xanthomonadales S Prokaryotic lipoprotein-attachment site - - - - - - - - - - - - LPAM_2 SRR25158195_k127_3893190_1 391008.Smal_3476 3.02e-173 544.0 COG0253@1|root,COG0253@2|Bacteria,1MWDH@1224|Proteobacteria,1RMGV@1236|Gammaproteobacteria,1X4YZ@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan dapF GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 ko:K01778 ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230 M00016,M00525,M00527 R02735 RC00302 ko00000,ko00001,ko00002,ko01000 - - - DAP_epimerase SRR25158195_k127_3893190_3 522373.Smlt4078 3.799e-131 434.0 COG3159@1|root,COG3159@2|Bacteria,1R4BP@1224|Proteobacteria,1S953@1236|Gammaproteobacteria,1X35M@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - ko:K09921 - - - - ko00000 - - - DUF484 SRR25158195_k127_3893190_2 1429851.X548_16025 2.422e-166 525.0 COG4973@1|root,COG4973@2|Bacteria,1MUJJ@1224|Proteobacteria,1RMJG@1236|Gammaproteobacteria,1X31C@135614|Xanthomonadales 135614|Xanthomonadales L Belongs to the 'phage' integrase family. XerC subfamily xerC - - ko:K03733 - - - - ko00000,ko03036 - - - Phage_int_SAM_1,Phage_integrase SRR25158195_k127_3899128_1 391008.Smal_0645 2.442e-62 218.0 COG1629@1|root,COG4771@2|Bacteria,1MX42@1224|Proteobacteria,1RQ2K@1236|Gammaproteobacteria,1X35F@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K16087 - - - - ko00000,ko02000 1.B.14.2 - - Plug,TonB_dep_Rec SRR25158195_k127_3899128_3 522373.Smlt0794 9.568e-35 133.0 COG4256@1|root,COG4256@2|Bacteria,1NGJH@1224|Proteobacteria,1T73W@1236|Gammaproteobacteria,1X8QP@135614|Xanthomonadales 135614|Xanthomonadales P Hemin transporter HemP VL23_12335 - - - - - - - - - - - hemP SRR25158195_k127_3899128_0 522373.Smlt0793 1.099e-205 649.0 COG0667@1|root,COG0667@2|Bacteria,1MU1S@1224|Proteobacteria,1RMIG@1236|Gammaproteobacteria,1X47C@135614|Xanthomonadales 135614|Xanthomonadales C potassium channel beta subunit - - - - - - - - - - - - Aldo_ket_red SRR25158195_k127_3899128_2 391008.Smal_0642 5.048e-61 211.0 COG1972@1|root,COG1972@2|Bacteria,1MXXX@1224|Proteobacteria,1RMBX@1236|Gammaproteobacteria,1X3AE@135614|Xanthomonadales 135614|Xanthomonadales F Na dependent nucleoside transporter yeiM - - ko:K03317 - - - - ko00000 2.A.41 - - Gate,Nucleos_tra2_C,Nucleos_tra2_N SRR25158195_k127_3899196_0 522373.Smlt2229 9.232e-164 516.0 COG1396@1|root,COG1396@2|Bacteria,1MUG2@1224|Proteobacteria,1RQP5@1236|Gammaproteobacteria,1X4MU@135614|Xanthomonadales 135614|Xanthomonadales K Helix-turn-helix XRE-family like proteins - - - - - - - - - - - - HTH_31 SRR25158195_k127_3899196_1 391008.Smal_1825 7.362e-47 176.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X4MT@135614|Xanthomonadales 135614|Xanthomonadales C In Escherichia coli this enzyme appears to be an NAD NADP -dependent succinate semialdehyde dehydrogenase - - 1.2.1.16,1.2.1.20,1.2.1.24,1.2.1.79 ko:K00135,ko:K08324 ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120 M00027 R00713,R00714,R02401 RC00080 ko00000,ko00001,ko00002,ko01000 - - - Aldedh SRR25158195_k127_3900904_0 391008.Smal_3158 1.666e-148 472.0 COG1496@1|root,COG1496@2|Bacteria,1MW2H@1224|Proteobacteria,1RNV4@1236|Gammaproteobacteria,1X34B@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the multicopper oxidase YfiH RL5 family - - - ko:K05810 - - - - ko00000,ko01000 - - - Cu-oxidase_4 SRR25158195_k127_3900904_1 391008.Smal_3157 1.463e-89 301.0 COG1748@1|root,COG1748@2|Bacteria,1PSWX@1224|Proteobacteria,1SXTG@1236|Gammaproteobacteria,1X7PD@135614|Xanthomonadales 135614|Xanthomonadales E Domain of unknown function (DUF4166) - - - - - - - - - - - - DUF4166 SRR25158195_k127_3900904_2 317013.NY99_17235 7.255e-56 198.0 COG3011@1|root,COG3011@2|Bacteria,1N0YV@1224|Proteobacteria,1S9QH@1236|Gammaproteobacteria,1X785@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function, DUF393 - - - - - - - - - - - - DUF393 SRR25158195_k127_3900904_3 1336208.JADY01000029_gene2312 5.9e-20 91.0 COG2885@1|root,COG2885@2|Bacteria,1N4QS@1224|Proteobacteria 1224|Proteobacteria M OmpA family - - - - - - - - - - - - DUF937,OmpA SRR25158195_k127_3907931_3 522373.Smlt2597 2.504e-84 284.0 COG0431@1|root,COG0431@2|Bacteria,1RAFI@1224|Proteobacteria,1RYNR@1236|Gammaproteobacteria,1X7BP@135614|Xanthomonadales 135614|Xanthomonadales S NAD(P)H-dependent FMN reductase - - - ko:K19784 - - - - ko00000 - - - FMN_red SRR25158195_k127_3907931_2 391008.Smal_3564 5.468e-106 349.0 2EGGB@1|root,31RVV@2|Bacteria,1QJ88@1224|Proteobacteria,1TH6E@1236|Gammaproteobacteria,1XA5E@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3907931_1 522373.Smlt0183 1.338e-126 413.0 COG5504@1|root,COG5504@2|Bacteria,1RCGT@1224|Proteobacteria,1SXX1@1236|Gammaproteobacteria,1X6Y0@135614|Xanthomonadales 135614|Xanthomonadales O Predicted Zn-dependent protease (DUF2268) - - - - - - - - - - - - DUF2268 SRR25158195_k127_3907931_0 522373.Smlt2563 2.748e-159 512.0 COG1680@1|root,COG1680@2|Bacteria,1NHIY@1224|Proteobacteria,1SZB8@1236|Gammaproteobacteria,1XCUA@135614|Xanthomonadales 135614|Xanthomonadales V Beta-lactamase - - - - - - - - - - - - Beta-lactamase SRR25158195_k127_3917342_2 391008.Smal_0944 8.918e-09 61.0 COG4099@1|root,COG4099@2|Bacteria,1RHBS@1224|Proteobacteria,1T15X@1236|Gammaproteobacteria,1XD38@135614|Xanthomonadales 135614|Xanthomonadales S Esterase PHB depolymerase - - - - - - - - - - - - Peptidase_S9 SRR25158195_k127_3917342_1 391008.Smal_0945 4.511e-47 170.0 2AS7B@1|root,31HKB@2|Bacteria,1QFB0@1224|Proteobacteria,1T8TA@1236|Gammaproteobacteria,1XB7E@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3917342_0 522373.Smlt1103 1.746e-281 867.0 COG2239@1|root,COG2239@2|Bacteria,1MW24@1224|Proteobacteria,1RNE4@1236|Gammaproteobacteria,1X4NW@135614|Xanthomonadales 135614|Xanthomonadales P Acts as a magnesium transporter mgtE - - ko:K06213 - - - - ko00000,ko02000 1.A.26.1 - - CBS,MgtE,MgtE_N SRR25158195_k127_3924527_0 391008.Smal_2825 0.0 1045.0 COG1034@1|root,COG1034@2|Bacteria,1P8MN@1224|Proteobacteria,1RMUH@1236|Gammaproteobacteria,1X3DY@135614|Xanthomonadales 135614|Xanthomonadales C NADH-quinone oxidoreductase nuoG - 1.6.5.3 ko:K00336 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Fer2_4,Molybdop_Fe4S4,Molybdopterin,Molydop_binding,NADH-G_4Fe-4S_3 SRR25158195_k127_3924527_1 391008.Smal_2826 3.776e-307 941.0 COG1894@1|root,COG1894@2|Bacteria,1MV8F@1224|Proteobacteria,1RMUD@1236|Gammaproteobacteria,1X2ZD@135614|Xanthomonadales 135614|Xanthomonadales C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain nuoF - 1.6.5.3 ko:K00335 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_51K,NADH_4Fe-4S,SLBB SRR25158195_k127_3924527_2 522373.Smlt3401 3.941e-114 368.0 COG1905@1|root,COG1905@2|Bacteria,1MWS2@1224|Proteobacteria,1RN4C@1236|Gammaproteobacteria,1X3TC@135614|Xanthomonadales 135614|Xanthomonadales C NADH dehydrogenase nuoE - 1.6.5.3 ko:K00334 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - 2Fe-2S_thioredx SRR25158195_k127_3924527_3 84531.JMTZ01000012_gene2971 1.287e-39 147.0 COG0649@1|root,COG0649@2|Bacteria,1MVIN@1224|Proteobacteria,1RM98@1236|Gammaproteobacteria,1X3JR@135614|Xanthomonadales 135614|Xanthomonadales C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoD - 1.6.5.3 ko:K00333 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Complex1_30kDa,Complex1_49kDa SRR25158195_k127_3928619_3 391008.Smal_0231 4.135e-72 244.0 COG3228@1|root,COG3228@2|Bacteria,1RAHF@1224|Proteobacteria,1RZQU@1236|Gammaproteobacteria,1X3K5@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the MtfA family - - - ko:K09933 - - - - ko00000,ko01002 - - - Peptidase_M90 SRR25158195_k127_3928619_0 522373.Smlt0282 2.969e-195 610.0 COG0340@1|root,COG1654@1|root,COG0340@2|Bacteria,COG1654@2|Bacteria,1MWCC@1224|Proteobacteria,1RNGC@1236|Gammaproteobacteria,1X4H7@135614|Xanthomonadales 135614|Xanthomonadales HK Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon birA - 6.3.4.15 ko:K03524 ko00780,ko01100,map00780,map01100 - R01074,R05145 RC00043,RC00070,RC00096,RC02896 ko00000,ko00001,ko01000,ko03000 - - - BPL_C,BPL_LplA_LipB,HTH_11 SRR25158195_k127_3928619_1 1429851.X548_20470 6.471e-149 473.0 COG1521@1|root,COG1521@2|Bacteria,1MUYA@1224|Proteobacteria,1S99V@1236|Gammaproteobacteria,1X5C9@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis coaX - 2.7.1.33 ko:K03525 ko00770,ko01100,map00770,map01100 M00120 R02971,R03018,R04391 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - Pan_kinase SRR25158195_k127_3928619_2 522373.Smlt0284 2.519e-117 383.0 2DP0A@1|root,3300Q@2|Bacteria,1N78Y@1224|Proteobacteria,1SH09@1236|Gammaproteobacteria,1X7P6@135614|Xanthomonadales 135614|Xanthomonadales S Sporulation related domain - - - - - - - - - - - - SPOR SRR25158195_k127_3929846_2 1118235.CAJH01000010_gene629 1.359e-17 85.0 28M8B@1|root,2ZAMG@2|Bacteria,1N1VT@1224|Proteobacteria,1RMP6@1236|Gammaproteobacteria,1X7VN@135614|Xanthomonadales 135614|Xanthomonadales S Group 4 capsule polysaccharide lipoprotein gfcB, YjbF - - - - - - - - - - - - YjbF SRR25158195_k127_3929846_0 1118235.CAJH01000010_gene628 1.594e-186 587.0 COG1596@1|root,COG1596@2|Bacteria,1N7GP@1224|Proteobacteria,1RQSM@1236|Gammaproteobacteria,1X4QU@135614|Xanthomonadales 135614|Xanthomonadales M COG1596 Periplasmic protein involved in polysaccharide export - - - ko:K01991 ko02026,map02026 - - - ko00000,ko00001,ko02000 1.B.18 - - Poly_export,SLBB SRR25158195_k127_3929846_1 977880.RALTA_B0011 6.682e-32 133.0 COG0671@1|root,COG0671@2|Bacteria,1R6RS@1224|Proteobacteria,2WFTD@28216|Betaproteobacteria,1KG0F@119060|Burkholderiaceae 28216|Betaproteobacteria I PAP2 superfamily - - - - - - - - - - - - PAP2 SRR25158195_k127_3929846_4 1118235.CAJH01000027_gene1951 4.611e-05 49.0 2A4S7@1|root,30TDN@2|Bacteria,1PD6H@1224|Proteobacteria,1T950@1236|Gammaproteobacteria,1XBPF@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_393668_0 522373.Smlt0136 0.0 2143.0 COG1014@1|root,COG4231@1|root,COG1014@2|Bacteria,COG4231@2|Bacteria,1MUKS@1224|Proteobacteria,1RSEQ@1236|Gammaproteobacteria,1X3DR@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates iorA - 1.2.7.8 ko:K04090 - - - - br01601,ko00000,ko01000 - - - POR,TPP_enzyme_C SRR25158195_k127_393668_3 522373.Smlt0137 1.592e-103 341.0 COG3063@1|root,COG3063@2|Bacteria,1PCUJ@1224|Proteobacteria,1SXZ3@1236|Gammaproteobacteria,1X71T@135614|Xanthomonadales 135614|Xanthomonadales NU Type IV pilus biogenesis stability protein PilW - - - - - - - - - - - - - SRR25158195_k127_393668_1 391008.Smal_0097 6.055e-312 958.0 COG0464@1|root,COG0464@2|Bacteria,1MW4T@1224|Proteobacteria,1RPUI@1236|Gammaproteobacteria,1X3NQ@135614|Xanthomonadales 135614|Xanthomonadales O ATPase family associated with various cellular activities (AAA) - - - - - - - - - - - - AAA SRR25158195_k127_393668_2 1429851.X548_19650 4.212e-121 417.0 COG1192@1|root,COG1192@2|Bacteria,1QBJX@1224|Proteobacteria,1S739@1236|Gammaproteobacteria,1X4EJ@135614|Xanthomonadales 135614|Xanthomonadales D CMP-binding protein - - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - CbiA SRR25158195_k127_393668_4 522373.Smlt0140 3.513e-95 313.0 COG2062@1|root,COG2062@2|Bacteria,1N0FX@1224|Proteobacteria,1S2AY@1236|Gammaproteobacteria,1X61S@135614|Xanthomonadales 135614|Xanthomonadales T phosphoglycerate mutase - - - - - - - - - - - - His_Phos_1 SRR25158195_k127_393668_5 522373.Smlt0141 1.072e-44 164.0 COG2353@1|root,COG2353@2|Bacteria,1PC7W@1224|Proteobacteria,1SX2I@1236|Gammaproteobacteria,1X72Z@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0312 family - - - - - - - - - - - - YceI SRR25158195_k127_3937346_3 391008.Smal_3892 1.091e-61 213.0 COG0330@1|root,COG0330@2|Bacteria,1MWMD@1224|Proteobacteria,1RNGH@1236|Gammaproteobacteria,1X5DI@135614|Xanthomonadales 135614|Xanthomonadales O prohibitin homologues - - - - - - - - - - - - Band_7 SRR25158195_k127_3937346_0 391008.Smal_3893 1.032e-256 799.0 COG1690@1|root,COG1690@2|Bacteria,1MUHA@1224|Proteobacteria,1RMXH@1236|Gammaproteobacteria,1X5BF@135614|Xanthomonadales 135614|Xanthomonadales S tRNA-splicing ligase RtcB - - 6.5.1.3 ko:K14415 - - - - ko00000,ko01000,ko03016 - - - RtcB SRR25158195_k127_3937346_1 522373.Smlt4534 3.697e-168 537.0 COG0492@1|root,COG0492@2|Bacteria,1MVWS@1224|Proteobacteria,1RRRH@1236|Gammaproteobacteria,1X5K6@135614|Xanthomonadales 135614|Xanthomonadales O Thioredoxin reductase - - - - - - - - - - - - Pyr_redox_2 SRR25158195_k127_3937346_4 1118235.CAJH01000046_gene2920 7.177e-53 191.0 COG1959@1|root,COG1959@2|Bacteria,1RGVW@1224|Proteobacteria,1S7TG@1236|Gammaproteobacteria,1X7BQ@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - Rrf2 SRR25158195_k127_3937346_2 391008.Smal_3896 1.159e-109 359.0 COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1XA4G@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - ko:K05874 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - HAMP,MCPsignal SRR25158195_k127_3945471_1 1429851.X548_00240 3.189e-75 253.0 COG2173@1|root,COG2173@2|Bacteria,1RENK@1224|Proteobacteria,1S3SJ@1236|Gammaproteobacteria,1X64M@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide ddpX - 3.4.13.22 ko:K08641 ko01502,ko02020,map01502,map02020 M00651 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504 - - - Peptidase_M15 SRR25158195_k127_3945471_2 391008.Smal_0345 6.833e-70 241.0 2CEA3@1|root,2ZDEM@2|Bacteria,1PB6T@1224|Proteobacteria,1T8CZ@1236|Gammaproteobacteria,1X7VM@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_3945471_3 391008.Smal_0346 1.151e-57 205.0 2E6AS@1|root,330YP@2|Bacteria,1NG1F@1224|Proteobacteria,1SCUW@1236|Gammaproteobacteria,1X8KB@135614|Xanthomonadales 135614|Xanthomonadales S EF hand - - - - - - - - - - - - EF-hand_5 SRR25158195_k127_3945471_0 522373.Smlt0468 3.055e-115 374.0 COG1011@1|root,COG1011@2|Bacteria,1MX48@1224|Proteobacteria,1SNTC@1236|Gammaproteobacteria,1X3KD@135614|Xanthomonadales 135614|Xanthomonadales S haloacid dehalogenase - - - ko:K07025 - - - - ko00000 - - - HAD_2,Hydrolase SRR25158195_k127_3953092_2 522373.Smlt1072 2.488e-57 201.0 COG0500@1|root,COG2226@2|Bacteria,1MXYF@1224|Proteobacteria,1RNWC@1236|Gammaproteobacteria,1X4IH@135614|Xanthomonadales 135614|Xanthomonadales Q Methyltransferase domain - - - ko:K15256 - - - - ko00000,ko01000,ko03016 - - - Methyltransf_25 SRR25158195_k127_3953092_0 522373.Smlt1070 5.8e-143 465.0 COG1349@1|root,COG1349@2|Bacteria,1MXW2@1224|Proteobacteria,1RQDR@1236|Gammaproteobacteria,1X6SS@135614|Xanthomonadales 135614|Xanthomonadales K DeoR C terminal sensor domain - - - - - - - - - - - - DeoRC,HTH_DeoR SRR25158195_k127_3953092_1 391008.Smal_0909 1.423e-85 293.0 COG0738@1|root,COG0738@2|Bacteria,1MVR9@1224|Proteobacteria,1RNEI@1236|Gammaproteobacteria,1X2YD@135614|Xanthomonadales 135614|Xanthomonadales G Major facilitator superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_395937_2 365046.Rta_08380 1.333e-55 196.0 COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,2VJ9G@28216|Betaproteobacteria,4AA2V@80864|Comamonadaceae 28216|Betaproteobacteria O peptidase S1 and S6, chymotrypsin Hap degQ - - ko:K04691,ko:K04772 - - - - ko00000,ko01000,ko01002 - - - PDZ_2,Trypsin_2 SRR25158195_k127_395937_0 365046.Rta_08360 3.864e-132 427.0 COG0805@1|root,COG0805@2|Bacteria,1MVAY@1224|Proteobacteria,2VI2H@28216|Betaproteobacteria,4A9MH@80864|Comamonadaceae 28216|Betaproteobacteria U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides tatC - - ko:K03118 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - TatC SRR25158195_k127_395937_1 365046.Rta_08350 1.361e-66 229.0 COG1826@1|root,COG1826@2|Bacteria,1N73F@1224|Proteobacteria,2VVPX@28216|Betaproteobacteria,4AE0H@80864|Comamonadaceae 28216|Betaproteobacteria U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation tatB - - ko:K03117 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 SRR25158195_k127_395937_3 365046.Rta_08340 2.147e-33 131.0 COG1826@1|root,COG1826@2|Bacteria,1N6S4@1224|Proteobacteria,2VVT6@28216|Betaproteobacteria,4AEWK@80864|Comamonadaceae 28216|Betaproteobacteria U Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system tatA - - ko:K03116 ko03060,ko03070,map03060,map03070 M00336 - - ko00000,ko00001,ko00002,ko02044 2.A.64 - - MttA_Hcf106 SRR25158195_k127_3961544_0 391008.Smal_3833 3.49e-181 569.0 COG1171@1|root,COG1171@2|Bacteria,1MVWJ@1224|Proteobacteria,1RPGU@1236|Gammaproteobacteria,1X2XV@135614|Xanthomonadales 135614|Xanthomonadales E dehydratase ilvA - 4.3.1.19 ko:K01754 ko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230 M00570 R00220,R00996 RC00418,RC02600 ko00000,ko00001,ko00002,ko01000 - - - PALP SRR25158195_k127_3961544_2 522373.Smlt4469 3.712e-128 412.0 COG1434@1|root,COG1434@2|Bacteria,1N0Q9@1224|Proteobacteria,1S98Q@1236|Gammaproteobacteria,1X5HX@135614|Xanthomonadales 135614|Xanthomonadales S DUF218 domain - - - - - - - - - - - - DUF218 SRR25158195_k127_3961544_1 522373.Smlt4463 1.418e-141 449.0 COG0500@1|root,COG2226@2|Bacteria,1PA5F@1224|Proteobacteria,1RY7A@1236|Gammaproteobacteria,1X53I@135614|Xanthomonadales 135614|Xanthomonadales H Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway bioC - 2.1.1.197 ko:K02169 ko00780,ko01100,map00780,map01100 M00572 R09543 RC00003,RC00460 ko00000,ko00001,ko00002,ko01000 - - - Methyltransf_11 SRR25158195_k127_3967819_1 391008.Smal_0507 4.459e-77 258.0 COG0449@1|root,COG0449@2|Bacteria,1MW4K@1224|Proteobacteria,1RMVN@1236|Gammaproteobacteria,1X43R@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source glmS GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 ko:K00820 ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931 - R00768 RC00010,RC00163,RC02752 ko00000,ko00001,ko01000,ko01002 - - - GATase_6,SIS SRR25158195_k127_3967819_0 522373.Smlt4098 8.608e-79 267.0 COG0517@1|root,COG0517@2|Bacteria 2|Bacteria S IMP dehydrogenase activity - - - - - - - - - - - - CBS SRR25158195_k127_3967819_2 391008.Smal_3497 2.964e-12 66.0 COG0346@1|root,COG0346@2|Bacteria,1RD0N@1224|Proteobacteria,1SY9P@1236|Gammaproteobacteria,1X6MB@135614|Xanthomonadales 135614|Xanthomonadales E Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase SRR25158195_k127_3972271_3 391008.Smal_1856 3.962e-35 134.0 COG1192@1|root,COG1192@2|Bacteria,1MWSE@1224|Proteobacteria,1RQ3X@1236|Gammaproteobacteria,1X3PS@135614|Xanthomonadales 135614|Xanthomonadales D partitioning protein ParA - - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31 SRR25158195_k127_3972271_0 1429851.X548_08160 8.868e-193 605.0 COG1360@1|root,COG1360@2|Bacteria,1MU4S@1224|Proteobacteria,1S294@1236|Gammaproteobacteria,1X322@135614|Xanthomonadales 135614|Xanthomonadales N Flagellar motor protein motB1 - - ko:K02557 ko02030,ko02040,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1 - - MotB_plug,OmpA SRR25158195_k127_3972271_1 1429851.X548_08165 1.71e-145 463.0 COG1291@1|root,COG1291@2|Bacteria,1MXK3@1224|Proteobacteria,1RNWB@1236|Gammaproteobacteria,1X422@135614|Xanthomonadales 135614|Xanthomonadales N this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine motC - - ko:K02556 ko02020,ko02030,ko02040,map02020,map02030,map02040 - - - ko00000,ko00001,ko02000,ko02035 1.A.30.1 - - MotA_ExbB SRR25158195_k127_3972271_2 522373.Smlt2267 3.47e-122 392.0 COG0643@1|root,COG2198@1|root,COG0643@2|Bacteria,COG2198@2|Bacteria,1MUAG@1224|Proteobacteria,1RMS6@1236|Gammaproteobacteria,1X3YM@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein cheA2 - 2.7.13.3 ko:K03407 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - CheW,H-kinase_dim,HATPase_c,Hpt SRR25158195_k127_3975353_0 522373.Smlt0109 0.0 1087.0 COG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1MU7B@1224|Proteobacteria,1RN2W@1236|Gammaproteobacteria,1X465@135614|Xanthomonadales 135614|Xanthomonadales E Glutamate synthase gltB - 1.4.1.13,1.4.1.14 ko:K00265 ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230 - R00093,R00114,R00248 RC00006,RC00010,RC02799 ko00000,ko00001,ko01000 - - - GATase_2,GXGXG,Glu_syn_central,Glu_synthase SRR25158195_k127_3978558_2 522373.Smlt1139 2.602e-99 326.0 COG1477@1|root,COG1477@2|Bacteria,1MW6K@1224|Proteobacteria,1RNMZ@1236|Gammaproteobacteria,1X42D@135614|Xanthomonadales 135614|Xanthomonadales H Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein apbE - 2.7.1.180 ko:K03734 - - - - ko00000,ko01000 - - - ApbE SRR25158195_k127_3978558_0 522373.Smlt1140 8.148e-169 531.0 COG5266@1|root,COG5266@2|Bacteria,1MXQS@1224|Proteobacteria,1RREM@1236|Gammaproteobacteria,1X45X@135614|Xanthomonadales 135614|Xanthomonadales P abc transporter, permease - - - - - - - - - - - - DUF4198 SRR25158195_k127_3978558_1 391008.Smal_0986 1.851e-110 357.0 COG3656@1|root,COG3656@2|Bacteria,1RD03@1224|Proteobacteria,1S8FB@1236|Gammaproteobacteria,1X5ZE@135614|Xanthomonadales 135614|Xanthomonadales S Predicted periplasmic protein (DUF2271) - - - - - - - - - - - - DUF2271 SRR25158195_k127_3985655_1 391008.Smal_3677 1.397e-177 557.0 COG2199@1|root,COG3290@1|root,COG3290@2|Bacteria,COG3706@2|Bacteria,1MX83@1224|Proteobacteria,1RMRP@1236|Gammaproteobacteria,1X7P0@135614|Xanthomonadales 135614|Xanthomonadales T Cache domain - - - - - - - - - - - - GGDEF,dCache_1 SRR25158195_k127_3985655_0 522373.Smlt4268 0.0 1144.0 COG4579@1|root,COG4579@2|Bacteria,1MVRB@1224|Proteobacteria,1RMC2@1236|Gammaproteobacteria,1X3M4@135614|Xanthomonadales 135614|Xanthomonadales F Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation aceK GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004721,GO:0005488,GO:0005524,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008772,GO:0009987,GO:0016208,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0042578,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050790,GO:0065007,GO:0065009,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564 2.7.11.5 ko:K00906 - - - - ko00000,ko01000 - - - AceK SRR25158195_k127_3985655_3 522373.Smlt4269 8.967e-61 214.0 COG2018@1|root,COG2018@2|Bacteria,1QV3M@1224|Proteobacteria,1T270@1236|Gammaproteobacteria,1X7Z5@135614|Xanthomonadales 135614|Xanthomonadales S Roadblock/LC7 domain - - - - - - - - - - - - - SRR25158195_k127_3985655_4 1177154.Y5S_00109 3.31e-06 54.0 COG2018@1|root,COG2018@2|Bacteria,1NHY7@1224|Proteobacteria,1SGME@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Roadblock/LC7 domain - - - ko:K07131 - - - - ko00000 - - - Robl_LC7 SRR25158195_k127_3985655_2 1429851.X548_17150 9.724e-100 328.0 COG2229@1|root,COG2229@2|Bacteria,1PYIA@1224|Proteobacteria,1S271@1236|Gammaproteobacteria,1XCPK@135614|Xanthomonadales 135614|Xanthomonadales S Conserved hypothetical ATP binding protein - - - ko:K06945 - - - - ko00000 - - - ATP_bind_1 SRR25158195_k127_3991727_2 522373.Smlt2827 1.039e-81 272.0 COG4232@1|root,COG4232@2|Bacteria,1QWZ3@1224|Proteobacteria,1T30Q@1236|Gammaproteobacteria,1XD9K@135614|Xanthomonadales 135614|Xanthomonadales CO Thioredoxin-like - - - - - - - - - - - - Thioredoxin_7 SRR25158195_k127_3991727_0 522373.Smlt2828 8.343e-126 404.0 COG0605@1|root,COG0605@2|Bacteria,1MVW2@1224|Proteobacteria,1RP7X@1236|Gammaproteobacteria,1XCXS@135614|Xanthomonadales 135614|Xanthomonadales P Destroys radicals which are normally produced within the cells and which are toxic to biological systems - - 1.15.1.1 ko:K04564 ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016 - - - ko00000,ko00001,ko01000 - - - Sod_Fe_C,Sod_Fe_N SRR25158195_k127_3991727_1 522373.Smlt2829 3.694e-102 338.0 COG1853@1|root,COG1853@2|Bacteria,1RGYM@1224|Proteobacteria,1S97V@1236|Gammaproteobacteria,1XC87@135614|Xanthomonadales 135614|Xanthomonadales S Flavin reductase like domain - - - - - - - - - - - - Flavin_Reduct SRR25158195_k127_3991727_3 1429851.X548_10190 2.023e-50 182.0 COG3063@1|root,COG3063@2|Bacteria,1N2T8@1224|Proteobacteria,1S9R8@1236|Gammaproteobacteria,1X8PH@135614|Xanthomonadales 135614|Xanthomonadales NU COG0457 FOG TPR repeat - - - - - - - - - - - - TPR_19 SRR25158195_k127_3994164_5 757424.Hsero_0768 5.501e-55 202.0 COG2268@1|root,COG2268@2|Bacteria,1QUZT@1224|Proteobacteria,2WGNB@28216|Betaproteobacteria,475TW@75682|Oxalobacteraceae 28216|Betaproteobacteria S Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - - - - - - - - - - DUF2235 SRR25158195_k127_3994164_4 1205753.A989_15943 2.234e-98 330.0 2EN5F@1|root,33FTE@2|Bacteria,1NIX8@1224|Proteobacteria,1SM9W@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Domain of unknown function (DUF4123) - - - - - - - - - - - - DUF4123 SRR25158195_k127_3994164_0 383407.XOC_1315 1.755e-314 989.0 COG3501@1|root,COG4253@1|root,COG3501@2|Bacteria,COG4253@2|Bacteria,1MU7Q@1224|Proteobacteria,1RN6G@1236|Gammaproteobacteria,1XCAW@135614|Xanthomonadales 135614|Xanthomonadales S Type IV secretion protein Rhs - - - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - DUF2345,Phage_GPD,T6SS_Vgr SRR25158195_k127_3994164_1 1131451.O1K_00260 6.453e-166 527.0 COG3515@1|root,COG3515@2|Bacteria,1MY80@1224|Proteobacteria,1T0A1@1236|Gammaproteobacteria,1X8Q8@135614|Xanthomonadales 135614|Xanthomonadales S ImpA, N-terminal, type VI secretion system impA - - ko:K11902 ko02025,map02025 M00334 - - ko00000,ko00001,ko00002,ko02044 - - - ImpA_N SRR25158195_k127_3994164_3 360094.PXO_04698 4.651e-110 362.0 COG2885@1|root,COG2885@2|Bacteria,1MWHF@1224|Proteobacteria,1S8KT@1236|Gammaproteobacteria,1X9Q9@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the ompA family - - - ko:K03286 - - - - ko00000,ko02000 1.B.6 - - OmpA SRR25158195_k127_3994164_2 1205753.A989_14347 2.394e-155 495.0 COG3913@1|root,COG3913@2|Bacteria,1P1K2@1224|Proteobacteria,1S7YG@1236|Gammaproteobacteria,1X9TC@135614|Xanthomonadales 135614|Xanthomonadales S type VI secretion protein - - - ko:K11890 ko02025,map02025 - - - ko00000,ko00001,ko02044 - - - DUF2094 SRR25158195_k127_4009003_1 391008.Smal_1856 3.058e-88 291.0 COG1192@1|root,COG1192@2|Bacteria,1MWSE@1224|Proteobacteria,1RQ3X@1236|Gammaproteobacteria,1X3PS@135614|Xanthomonadales 135614|Xanthomonadales D partitioning protein ParA - - - ko:K03496 - - - - ko00000,ko03036,ko04812 - - - AAA_31 SRR25158195_k127_4009003_0 522373.Smlt2263 3.029e-144 468.0 COG0835@1|root,COG0835@2|Bacteria,1R9IA@1224|Proteobacteria,1RXTZ@1236|Gammaproteobacteria,1X6ET@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis signal transduction protein - - - ko:K03408 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - CheW SRR25158195_k127_4009003_4 1429851.X548_08145 1.068e-54 192.0 COG1366@1|root,COG1366@2|Bacteria,1NIMN@1224|Proteobacteria,1SGV3@1236|Gammaproteobacteria,1X82I@135614|Xanthomonadales 135614|Xanthomonadales T factor (Antagonist - - - - - - - - - - - - STAS_2 SRR25158195_k127_4009003_3 391008.Smal_1853 4.631e-70 238.0 COG0745@1|root,COG0745@2|Bacteria,1RHDD@1224|Proteobacteria,1S67R@1236|Gammaproteobacteria,1X6J2@135614|Xanthomonadales 135614|Xanthomonadales KT Fis family transcriptional regulator cheY1 - - ko:K03413 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko02022,ko02035 - - - Response_reg SRR25158195_k127_4009003_2 522373.Smlt2260 1.066e-81 279.0 COG0643@1|root,COG2198@1|root,COG0643@2|Bacteria,COG2198@2|Bacteria,1MUAG@1224|Proteobacteria,1RMS6@1236|Gammaproteobacteria,1X49D@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein cheA1 - 2.7.13.3 ko:K03407 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - CheW,H-kinase_dim,HATPase_c,Hpt SRR25158195_k127_4013490_1 543728.Vapar_1649 6.493e-173 552.0 COG0665@1|root,COG0665@2|Bacteria,1MU7M@1224|Proteobacteria,2VPYG@28216|Betaproteobacteria 28216|Betaproteobacteria E fad dependent oxidoreductase - - - - - - - - - - - - DAO SRR25158195_k127_4013490_0 1088721.NSU_3740 4.185e-178 563.0 COG0665@1|root,COG0665@2|Bacteria,1MU7M@1224|Proteobacteria,2TT69@28211|Alphaproteobacteria 28211|Alphaproteobacteria E COG0665 Glycine D-amino acid oxidases (deaminating) - - - - - - - - - - - - DAO SRR25158195_k127_4029909_1 391008.Smal_1175 1.604e-168 530.0 COG0583@1|root,COG0583@2|Bacteria,1MWUP@1224|Proteobacteria,1RNIC@1236|Gammaproteobacteria,1X9RV@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator iciA - - ko:K05596 - - - - ko00000,ko03000,ko03036 - - - HTH_1,LysR_substrate SRR25158195_k127_4029909_0 391008.Smal_1174 9.831e-213 666.0 COG1538@1|root,COG1538@2|Bacteria,1N23P@1224|Proteobacteria,1RMXN@1236|Gammaproteobacteria,1X8EQ@135614|Xanthomonadales 135614|Xanthomonadales MU Outer membrane efflux protein - - - - - - - - - - - - OEP SRR25158195_k127_4033352_3 391008.Smal_0271 2.674e-85 283.0 COG3637@1|root,COG3637@2|Bacteria,1RK7I@1224|Proteobacteria,1S80S@1236|Gammaproteobacteria,1X6IJ@135614|Xanthomonadales 135614|Xanthomonadales M Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety ax21 - - - - - - - - - - - OMP_b-brl SRR25158195_k127_4033352_4 1429851.X548_20675 1.03e-71 245.0 COG5507@1|root,COG5507@2|Bacteria,1RHC1@1224|Proteobacteria,1S6KT@1236|Gammaproteobacteria,1X6VN@135614|Xanthomonadales 135614|Xanthomonadales S RNA signal recognition particle - - - - - - - - - - - - DUF1428 SRR25158195_k127_4033352_1 1429851.X548_20670 2.031e-113 369.0 28I2C@1|root,2Z86I@2|Bacteria,1PZZR@1224|Proteobacteria,1SM0S@1236|Gammaproteobacteria,1X64Z@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_4033352_2 522373.Smlt0383 2.516e-100 339.0 2EBKM@1|root,335M1@2|Bacteria,1N9S8@1224|Proteobacteria,1SESU@1236|Gammaproteobacteria,1X8H1@135614|Xanthomonadales 135614|Xanthomonadales S heparin binding - - - - - - - - - - - - - SRR25158195_k127_4033352_0 1429851.X548_20655 1.119e-221 693.0 COG0265@1|root,COG0265@2|Bacteria,1MU63@1224|Proteobacteria,1RN9T@1236|Gammaproteobacteria,1X3EN@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the peptidase S1C family htrA - 3.4.21.107 ko:K04771 ko01503,ko02020,map01503,map02020 M00728 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko03110 - - - PDZ,PDZ_2,Trypsin_2 SRR25158195_k127_4047085_1 502025.Hoch_6819 2.951e-12 78.0 29RQC@1|root,30CTT@2|Bacteria,1QTPW@1224|Proteobacteria,435D4@68525|delta/epsilon subdivisions,2WZQP@28221|Deltaproteobacteria,2Z2IY@29|Myxococcales 28221|Deltaproteobacteria - - - - - - - - - - - - - - PEGA SRR25158195_k127_4047085_0 404589.Anae109_0620 2.477e-84 298.0 COG4191@1|root,COG4191@2|Bacteria,1R5Q1@1224|Proteobacteria,42RPW@68525|delta/epsilon subdivisions,2WK10@28221|Deltaproteobacteria,2Z2WV@29|Myxococcales 28221|Deltaproteobacteria T HAMP domain - - 2.7.13.3 ko:K02482 - - - - ko00000,ko01000,ko01001,ko02022 - - - HAMP,HATPase_c,HisKA,dCache_2 SRR25158195_k127_4051640_2 522373.Smlt3415 3.59e-184 576.0 COG0777@1|root,COG0777@2|Bacteria,1MW8G@1224|Proteobacteria,1RNDS@1236|Gammaproteobacteria,1X3KH@135614|Xanthomonadales 135614|Xanthomonadales I Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA accD - 2.1.3.15,6.4.1.2 ko:K01963 ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212 M00082,M00376 R00742,R04386 RC00040,RC00253,RC00367 ko00000,ko00001,ko00002,ko01000 - - - Carboxyl_trans SRR25158195_k127_4051640_0 1429851.X548_12730 2.461e-268 829.0 COG1109@1|root,COG1109@2|Bacteria,1MU24@1224|Proteobacteria,1RMR2@1236|Gammaproteobacteria,1X37A@135614|Xanthomonadales 135614|Xanthomonadales G Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate glmM - 5.4.2.10 ko:K03431 ko00520,ko01100,ko01130,map00520,map01100,map01130 - R02060 RC00408 ko00000,ko00001,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV SRR25158195_k127_4051640_3 1118235.CAJH01000004_gene279 1.071e-146 468.0 COG0726@1|root,COG0726@2|Bacteria 2|Bacteria G polysaccharide deacetylase hmsF - - ko:K11931,ko:K21478 ko02026,map02026 - R03096 RC00010 ko00000,ko00001,ko01000 - - - Polysacc_deac_1 SRR25158195_k127_4051640_1 1429851.X548_12715 1.014e-206 647.0 COG0438@1|root,COG0438@2|Bacteria,1MU9C@1224|Proteobacteria,1RZRG@1236|Gammaproteobacteria,1X7ZU@135614|Xanthomonadales 135614|Xanthomonadales M Glycosyl transferase 4-like domain - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 SRR25158195_k127_4051640_4 522373.Smlt3410 5.881e-18 83.0 COG3083@1|root,COG3083@2|Bacteria,1MX6X@1224|Proteobacteria,1RPAU@1236|Gammaproteobacteria,1X9Z3@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF3413) - - - ko:K07014 - - - - ko00000 - - - DUF3413,Sulfatase SRR25158195_k127_4064808_7 522373.Smlt2679 2.731e-79 267.0 2ATB0@1|root,31IU1@2|Bacteria,1QGHE@1224|Proteobacteria,1TDX8@1236|Gammaproteobacteria,1XB4H@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_4064808_1 391008.Smal_2153 3.39e-281 869.0 COG0477@1|root,COG0477@2|Bacteria,1MWXZ@1224|Proteobacteria,1RY5H@1236|Gammaproteobacteria,1X66Z@135614|Xanthomonadales 135614|Xanthomonadales EGP Major Facilitator Superfamily - - - ko:K08167 - M00713,M00714 - - ko00000,ko00002,ko01504,ko02000 2.A.1.3 - - MFS_1 SRR25158195_k127_4064808_5 1429851.X548_09530 2.852e-95 314.0 COG1309@1|root,COG1309@2|Bacteria,1QITU@1224|Proteobacteria,1SQTY@1236|Gammaproteobacteria,1XC52@135614|Xanthomonadales 135614|Xanthomonadales K Bacterial regulatory proteins, tetR family - - - - - - - - - - - - TetR_N SRR25158195_k127_4064808_2 391008.Smal_2149 5.93e-152 483.0 COG1526@1|root,COG1526@2|Bacteria,1NRU0@1224|Proteobacteria,1RNFH@1236|Gammaproteobacteria,1X3VA@135614|Xanthomonadales 135614|Xanthomonadales C Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH fdhD - - ko:K02379 - - - - ko00000 - - - FdhD-NarQ SRR25158195_k127_4064808_0 522373.Smlt2671 0.0 1451.0 COG0243@1|root,COG0243@2|Bacteria,1MU6B@1224|Proteobacteria,1RNXW@1236|Gammaproteobacteria,1X3PR@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - - - - - - - - - - Molybdopterin,Molydop_binding SRR25158195_k127_4064808_6 522373.Smlt2668 1.549e-82 281.0 COG3019@1|root,COG3019@2|Bacteria,1MZ9V@1224|Proteobacteria,1S9CQ@1236|Gammaproteobacteria,1X79E@135614|Xanthomonadales 135614|Xanthomonadales S Copper amine oxidase - - - - - - - - - - - - DUF411 SRR25158195_k127_4064808_3 522373.Smlt2667 5.271e-148 475.0 COG0491@1|root,COG0491@2|Bacteria,1P5NJ@1224|Proteobacteria,1S1CZ@1236|Gammaproteobacteria,1X6Q6@135614|Xanthomonadales 135614|Xanthomonadales S Metallo-beta-lactamase superfamily - - 3.5.2.6 ko:K17837 ko01501,map01501 - R06363 RC01499 ko00000,ko00001,ko01000 - - - Lactamase_B SRR25158195_k127_4064808_4 522373.Smlt2658 3.438e-114 370.0 COG4566@1|root,COG4566@2|Bacteria,1R47Z@1224|Proteobacteria,1SYSN@1236|Gammaproteobacteria,1XCBB@135614|Xanthomonadales 135614|Xanthomonadales K response regulator - - - - - - - - - - - - GerE,Response_reg SRR25158195_k127_4072130_3 522373.Smlt0748 1.42e-55 194.0 COG0275@1|root,COG0275@2|Bacteria,1MUT4@1224|Proteobacteria,1RM7M@1236|Gammaproteobacteria,1X2YP@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA rsmH GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 ko:K03438 - - - - ko00000,ko01000,ko03009 - - - Methyltransf_5 SRR25158195_k127_4072130_4 391008.Smal_0596 1.011e-43 162.0 COG3116@1|root,COG3116@2|Bacteria,1NI3C@1224|Proteobacteria,1SGSB@1236|Gammaproteobacteria,1XD1E@135614|Xanthomonadales 135614|Xanthomonadales D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic ftsL - - ko:K03586 - - - - ko00000,ko03036 - - - FtsL SRR25158195_k127_4072130_0 522373.Smlt0750 0.0 1193.0 COG0768@1|root,COG0768@2|Bacteria,1MUNY@1224|Proteobacteria,1RNGW@1236|Gammaproteobacteria,1X3X2@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes cross-linking of the peptidoglycan cell wall at the division septum ftsI - 3.4.16.4 ko:K03587 ko00550,ko01501,map00550,map01501 - - - ko00000,ko00001,ko01000,ko01011,ko03036 - - - PBP_dimer,Transpeptidase SRR25158195_k127_4072130_1 391008.Smal_0598 1.181e-297 921.0 COG0769@1|root,COG0769@2|Bacteria,1MU6P@1224|Proteobacteria,1RMD6@1236|Gammaproteobacteria,1X488@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan murE - 6.3.2.13 ko:K01928 ko00300,ko00550,map00300,map00550 - R02788 RC00064,RC00090 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M SRR25158195_k127_4072130_2 391008.Smal_0599 1.084e-280 867.0 COG0770@1|root,COG0770@2|Bacteria,1QTSF@1224|Proteobacteria,1RMGD@1236|Gammaproteobacteria,1X3IV@135614|Xanthomonadales 135614|Xanthomonadales M Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein murF - 6.3.2.10 ko:K01929 ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502 - R04573,R04617 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M SRR25158195_k127_407473_6 1429851.X548_09940 1.645e-33 132.0 COG0746@1|root,COG0746@2|Bacteria,1NAYX@1224|Proteobacteria,1SCS5@1236|Gammaproteobacteria,1XCJG@135614|Xanthomonadales 135614|Xanthomonadales H Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor - - 2.7.7.77 ko:K03752 ko00790,ko01100,map00790,map01100 - R11581 - ko00000,ko00001,ko01000 - - - NTP_transf_3 SRR25158195_k127_407473_5 1429851.X548_09935 9.739e-46 168.0 2AQHN@1|root,31FQ9@2|Bacteria,1QDDV@1224|Proteobacteria,1T9C9@1236|Gammaproteobacteria,1X86S@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_407473_1 391008.Smal_2229 3.445e-149 474.0 COG0664@1|root,COG0664@2|Bacteria,1MVGE@1224|Proteobacteria,1RPTB@1236|Gammaproteobacteria,1X4T1@135614|Xanthomonadales 135614|Xanthomonadales K COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - ko:K01420 - - - - ko00000,ko03000 - - - HTH_Crp_2,cNMP_binding SRR25158195_k127_407473_3 391008.Smal_2228 7.249e-131 422.0 COG0725@1|root,COG0725@2|Bacteria,1MVNA@1224|Proteobacteria,1RN71@1236|Gammaproteobacteria,1X6RU@135614|Xanthomonadales 135614|Xanthomonadales P ABC-type molybdate transport system periplasmic component modA GO:0003674,GO:0005488,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0015689,GO:0015698,GO:0030973,GO:0043167,GO:0043168,GO:0051179,GO:0051234,GO:1901359 - ko:K02020 ko02010,map02010 M00189 - - ko00000,ko00001,ko00002,ko02000 3.A.1.8 - - SBP_bac_11 SRR25158195_k127_407473_2 522373.Smlt2765 3.197e-131 420.0 COG4149@1|root,COG4149@2|Bacteria,1MUXR@1224|Proteobacteria,1RRDV@1236|Gammaproteobacteria,1X5DM@135614|Xanthomonadales 135614|Xanthomonadales P abc transporter, permease modB - - ko:K02018 ko02010,map02010 M00189 - - ko00000,ko00001,ko00002,ko02000 3.A.1.8 - - BPD_transp_1 SRR25158195_k127_407473_4 1231391.AMZF01000036_gene2953 1.113e-68 240.0 COG3842@1|root,COG3842@2|Bacteria,1RC3N@1224|Proteobacteria,2VI5R@28216|Betaproteobacteria,3T3GV@506|Alcaligenaceae 28216|Betaproteobacteria E ABC transporter modC - 3.6.3.29 ko:K02017 ko02010,map02010 M00189 - - ko00000,ko00001,ko00002,ko01000,ko02000 3.A.1.8 - - ABC_tran SRR25158195_k127_407473_0 522373.Smlt2763 5.157e-153 486.0 COG0369@1|root,COG0369@2|Bacteria,1QUAH@1224|Proteobacteria,1T1RJ@1236|Gammaproteobacteria,1X3NF@135614|Xanthomonadales 135614|Xanthomonadales E Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component cysJ - 1.8.1.2 ko:K00380 ko00920,ko01100,ko01120,map00920,map01100,map01120 M00176 R00858 RC00065 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_1,Flavodoxin_1,NAD_binding_1 SRR25158195_k127_4074886_1 522373.Smlt3802 1.287e-106 359.0 2B3X8@1|root,31WM6@2|Bacteria,1RFRT@1224|Proteobacteria,1SY9Y@1236|Gammaproteobacteria,1XCRU@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3999) - - - - - - - - - - - - DUF3999 SRR25158195_k127_4074886_0 391008.Smal_3218 3.727e-126 405.0 COG5373@1|root,COG5373@2|Bacteria,1N08V@1224|Proteobacteria,1RNGS@1236|Gammaproteobacteria,1X47E@135614|Xanthomonadales 135614|Xanthomonadales S Predicted membrane protein (DUF2339) - - - - - - - - - - - - DUF2339 SRR25158195_k127_4085331_4 522373.Smlt0970 2.152e-22 96.0 COG3291@1|root,COG3291@2|Bacteria,1R7JK@1224|Proteobacteria,1S0UR@1236|Gammaproteobacteria,1X476@135614|Xanthomonadales 135614|Xanthomonadales S Metalloprotease, specifically cleaves on the N-terminal side of aspartyl, glutamyl and cysteic acid residues - - - - - - - - - - - - Reprolysin_5 SRR25158195_k127_4085331_1 522373.Smlt0971 5.252e-149 472.0 COG2908@1|root,COG2908@2|Bacteria,1N3U7@1224|Proteobacteria,1RP1X@1236|Gammaproteobacteria,1X5K2@135614|Xanthomonadales 135614|Xanthomonadales S Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell lpxH - 3.6.1.54 ko:K03269 ko00540,ko01100,map00540,map01100 M00060 R04549 RC00002 ko00000,ko00001,ko00002,ko01000,ko01005 - - - Metallophos,Metallophos_2 SRR25158195_k127_4085331_2 383407.XOC_1111 6.324e-80 271.0 COG0671@1|root,COG0671@2|Bacteria,1RJ1T@1224|Proteobacteria,1SAU1@1236|Gammaproteobacteria,1X60M@135614|Xanthomonadales 135614|Xanthomonadales I Acid phosphatase homologues - - 3.6.1.27 ko:K19302 ko00550,map00550 - R05627 RC00002 ko00000,ko00001,ko01000,ko01011 - - - PAP2 SRR25158195_k127_4085331_0 391008.Smal_0818 2.426e-237 738.0 COG0438@1|root,COG0438@2|Bacteria,1MUB7@1224|Proteobacteria,1RQYE@1236|Gammaproteobacteria,1X41B@135614|Xanthomonadales 135614|Xanthomonadales M Glycosyl transferase - - - - - - - - - - - - Glyco_trans_1_4,Glyco_transf_4,Glycos_transf_1 SRR25158195_k127_4085331_3 1118235.CAJH01000057_gene3261 6.514e-35 133.0 COG1629@1|root,COG4206@1|root,COG4206@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1X3YY@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_4086081_5 1429851.X548_14880 2.193e-67 231.0 COG5009@1|root,COG5009@2|Bacteria,1MU5A@1224|Proteobacteria,1RM7J@1236|Gammaproteobacteria,1X2XN@135614|Xanthomonadales 135614|Xanthomonadales M penicillin-binding protein mrcA - 2.4.1.129,3.4.16.4 ko:K05366 ko00550,ko01100,ko01501,map00550,map01100,map01501 - - - ko00000,ko00001,ko01000,ko01003,ko01011 - GT51 - PCB_OB,Transgly,Transpeptidase SRR25158195_k127_4086081_1 522373.Smlt3825 3.297e-215 680.0 COG4972@1|root,COG4972@2|Bacteria,1MX8P@1224|Proteobacteria,1RN8S@1236|Gammaproteobacteria,1X3US@135614|Xanthomonadales 135614|Xanthomonadales NU Pilus assembly protein pilM - - ko:K02662 - - - - ko00000,ko02035,ko02044 - - - PilM_2 SRR25158195_k127_4086081_2 391008.Smal_3239 1.546e-132 436.0 COG3166@1|root,COG3166@2|Bacteria,1RF1S@1224|Proteobacteria,1S3S0@1236|Gammaproteobacteria,1X4XB@135614|Xanthomonadales 135614|Xanthomonadales NU assembly protein (PilN) pilN - - ko:K02663 - - - - ko00000,ko02035,ko02044 - - - PilN SRR25158195_k127_4086081_3 391008.Smal_3238 2.628e-119 391.0 COG3167@1|root,COG3167@2|Bacteria,1RBGW@1224|Proteobacteria,1S3XQ@1236|Gammaproteobacteria,1X4H8@135614|Xanthomonadales 135614|Xanthomonadales NU Pilus assembly protein, PilO pilO - - ko:K02664 - - - - ko00000,ko02035,ko02044 - - - PilO SRR25158195_k127_4086081_4 1429851.X548_14860 2.172e-105 343.0 COG3168@1|root,COG3168@2|Bacteria,1RI6V@1224|Proteobacteria,1S6VJ@1236|Gammaproteobacteria,1X61Y@135614|Xanthomonadales 135614|Xanthomonadales NU pilus assembly protein pilp pilP - - ko:K02665 - - - - ko00000,ko02035,ko02044 - - - PilP SRR25158195_k127_4086081_0 391008.Smal_3236 0.0 1145.0 COG4796@1|root,COG4796@2|Bacteria,1QTT6@1224|Proteobacteria,1RN3Z@1236|Gammaproteobacteria,1X3SF@135614|Xanthomonadales 135614|Xanthomonadales U Type II secretory pathway, component HofQ pilQ - - ko:K02666 - - - - ko00000,ko02035,ko02044 3.A.15.2 - - AMIN,STN,Secretin,Secretin_N SRR25158195_k127_4093667_2 522373.Smlt3494 1.502e-172 544.0 COG4805@1|root,COG4805@2|Bacteria,1MUBX@1224|Proteobacteria,1RMT7@1236|Gammaproteobacteria,1X39Z@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - DUF885 SRR25158195_k127_4093667_1 522373.Smlt3495 3.099e-200 628.0 COG1680@1|root,COG1680@2|Bacteria,1MVPR@1224|Proteobacteria,1S5WE@1236|Gammaproteobacteria,1X3ZI@135614|Xanthomonadales 135614|Xanthomonadales V beta-lactamase - - - - - - - - - - - - Beta-lactamase SRR25158195_k127_4093667_5 1429851.X548_13250 2.834e-75 259.0 COG0346@1|root,COG0346@2|Bacteria,1RGZ8@1224|Proteobacteria,1S66M@1236|Gammaproteobacteria,1X73S@135614|Xanthomonadales 135614|Xanthomonadales E Glyoxalase-like domain - - - ko:K08234 - - - - ko00000 - - - Glyoxalase SRR25158195_k127_4093667_4 522373.Smlt3497 3.57e-87 297.0 COG4731@1|root,COG4731@2|Bacteria,1N19Y@1224|Proteobacteria,1SBCW@1236|Gammaproteobacteria,1X71P@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - DUF2147 SRR25158195_k127_4093667_0 1429851.X548_13260 0.0 1320.0 COG0073@1|root,COG0143@1|root,COG0073@2|Bacteria,COG0143@2|Bacteria,1MUBY@1224|Proteobacteria,1RMYM@1236|Gammaproteobacteria,1X4XX@135614|Xanthomonadales 135614|Xanthomonadales J Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation metG GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 ko:K01874 ko00450,ko00970,map00450,map00970 M00359,M00360 R03659,R04773 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - tRNA-synt_1g,tRNA_bind SRR25158195_k127_4093667_3 1429851.X548_13265 5.89e-121 390.0 COG0560@1|root,COG0560@2|Bacteria,1RKIX@1224|Proteobacteria,1S4JE@1236|Gammaproteobacteria,1XC46@135614|Xanthomonadales 135614|Xanthomonadales E haloacid dehalogenase-like hydrolase - - - - - - - - - - - - HAD SRR25158195_k127_4093667_6 522373.Smlt3500 2.596e-17 81.0 COG2878@1|root,COG2878@2|Bacteria,1MUWU@1224|Proteobacteria,1RNSJ@1236|Gammaproteobacteria,1X6DN@135614|Xanthomonadales 135614|Xanthomonadales C Part of a membrane complex involved in electron transport ydgM - - ko:K03616 - - - - ko00000 - - - FeS,Fer4_21 SRR25158195_k127_4104307_0 522373.Smlt1177 0.0 1354.0 COG3408@1|root,COG3408@2|Bacteria,1QWGV@1224|Proteobacteria,1RYXV@1236|Gammaproteobacteria,1X56X@135614|Xanthomonadales 135614|Xanthomonadales G Glycogen debranching enzyme - - - - - - - - - - - - Bac_rhamnosid6H,GDE_C SRR25158195_k127_4104307_2 391008.Smal_1021 5.18e-302 930.0 COG2211@1|root,COG2211@2|Bacteria,1MX4Z@1224|Proteobacteria,1RRNW@1236|Gammaproteobacteria,1X5B8@135614|Xanthomonadales 135614|Xanthomonadales G Major facilitator superfamily - - - ko:K16211 - - - - ko00000,ko02000 2.A.2.6 - - MFS_1 SRR25158195_k127_4104307_1 391008.Smal_1022 0.0 1084.0 COG0366@1|root,COG0366@2|Bacteria,1NUIZ@1224|Proteobacteria,1RPMQ@1236|Gammaproteobacteria,1X5NK@135614|Xanthomonadales 135614|Xanthomonadales G cyclomaltodextrin glucanotransferase cgt - 2.4.1.19 ko:K00701 ko00500,map00500 - R11260 - ko00000,ko00001,ko01000 - CBM20,GH13 - Alpha-amylase SRR25158195_k127_4104307_4 522373.Smlt1186 7.397e-12 65.0 COG1609@1|root,COG1609@2|Bacteria,1MW7E@1224|Proteobacteria,1RNKJ@1236|Gammaproteobacteria,1X470@135614|Xanthomonadales 135614|Xanthomonadales K LacI family - - - - - - - - - - - - LacI,Peripla_BP_3 SRR25158195_k127_4104490_8 1429851.X548_00985 7.011e-40 151.0 COG0438@1|root,COG0438@2|Bacteria,1N5HW@1224|Proteobacteria,1RPPH@1236|Gammaproteobacteria,1X68G@135614|Xanthomonadales 135614|Xanthomonadales M Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 SRR25158195_k127_4104490_2 1429851.X548_00990 1.335e-213 672.0 COG1089@1|root,COG1089@2|Bacteria,1MUX0@1224|Proteobacteria,1RMIY@1236|Gammaproteobacteria,1X4K4@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose gmd - 4.2.1.47 ko:K01711 ko00051,ko00520,ko01100,map00051,map00520,map01100 - R00888 RC00402 ko00000,ko00001,ko01000 - - - GDP_Man_Dehyd SRR25158195_k127_4104490_5 1198452.Jab_2c30590 2.842e-102 341.0 COG0451@1|root,COG0451@2|Bacteria,1MVPZ@1224|Proteobacteria,2VM2A@28216|Betaproteobacteria,474ST@75682|Oxalobacteraceae 28216|Betaproteobacteria GM Male sterility protein - - 1.1.1.135,1.1.1.281 ko:K15856,ko:K22252 ko00051,ko00520,map00051,map00520 - R03396,R03397,R03398,R03399 RC00182 ko00000,ko00001,ko01000 - - - Epimerase,GDP_Man_Dehyd SRR25158195_k127_4104490_9 266264.Rmet_4588 1.732e-07 60.0 COG2076@1|root,COG2076@2|Bacteria,1NAUF@1224|Proteobacteria,2WE9Q@28216|Betaproteobacteria,1KHNZ@119060|Burkholderiaceae 28216|Betaproteobacteria P Small Multidrug Resistance protein - - - - - - - - - - - - EamA,Multi_Drug_Res SRR25158195_k127_4104490_6 1280946.HY29_07890 3.222e-85 301.0 COG0438@1|root,COG0438@2|Bacteria 2|Bacteria M transferase activity, transferring glycosyl groups - - - - - - - - - - - - Glyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1,Glycos_transf_2,Methyltransf_11 SRR25158195_k127_4104490_3 522373.Smlt0634 4.878e-182 580.0 COG0382@1|root,COG0560@1|root,COG0382@2|Bacteria,COG0560@2|Bacteria,1MXCM@1224|Proteobacteria,1RRWB@1236|Gammaproteobacteria,1X353@135614|Xanthomonadales 135614|Xanthomonadales H UbiA prenyltransferase family - - - - - - - - - - - - HAD,UbiA SRR25158195_k127_4104490_0 1429851.X548_01030 2.91e-291 897.0 COG0662@1|root,COG0836@1|root,COG0662@2|Bacteria,COG0836@2|Bacteria,1MV39@1224|Proteobacteria,1RNQI@1236|Gammaproteobacteria,1X3S9@135614|Xanthomonadales 135614|Xanthomonadales GM Belongs to the mannose-6-phosphate isomerase type 2 family cpsB GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.7.7.13,5.3.1.8 ko:K16011 ko00051,ko00520,ko01100,ko01110,ko01130,ko02025,map00051,map00520,map01100,map01110,map01130,map02025 M00114,M00362 R00885,R01819 RC00002,RC00376 ko00000,ko00001,ko00002,ko01000 - - - MannoseP_isomer,NTP_transferase SRR25158195_k127_4104490_1 1429851.X548_01035 5.967e-282 884.0 COG1109@1|root,COG1109@2|Bacteria,1MUA5@1224|Proteobacteria,1RMU8@1236|Gammaproteobacteria,1X4M9@135614|Xanthomonadales 135614|Xanthomonadales G phosphomannomutase xanA - 5.4.2.2,5.4.2.8 ko:K15778 ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130 M00114 R00959,R01057,R01818,R08639 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV SRR25158195_k127_4104490_4 522373.Smlt0645 1.683e-142 453.0 COG2025@1|root,COG2025@2|Bacteria,1MUFI@1224|Proteobacteria,1RMK7@1236|Gammaproteobacteria,1X4RW@135614|Xanthomonadales 135614|Xanthomonadales C Electron transfer flavoprotein etfA - - ko:K03522 - - - - ko00000,ko04147 - - - ETF,ETF_alpha SRR25158195_k127_4104720_1 391008.Smal_1947 8.419e-142 451.0 COG1262@1|root,COG1262@2|Bacteria,1Q227@1224|Proteobacteria,1RQEK@1236|Gammaproteobacteria,1X56Z@135614|Xanthomonadales 135614|Xanthomonadales S SapC - - - - - - - - - - - - SapC SRR25158195_k127_4104720_3 391008.Smal_1950 3.315e-97 324.0 COG3040@1|root,COG3040@2|Bacteria,1RIKA@1224|Proteobacteria,1T0AA@1236|Gammaproteobacteria,1X6SY@135614|Xanthomonadales 135614|Xanthomonadales M Lipocalin-like domain blc4 - - ko:K03098 - - - - ko00000,ko04147 - - - Lipocalin_2 SRR25158195_k127_4104720_0 391008.Smal_1951 1.915e-202 634.0 COG2230@1|root,COG2230@2|Bacteria,1MUW5@1224|Proteobacteria,1RPUC@1236|Gammaproteobacteria,1X38D@135614|Xanthomonadales 135614|Xanthomonadales M synthase - - 2.1.1.79 ko:K00574 - - - - ko00000,ko01000 - - - CMAS SRR25158195_k127_4104720_2 1429851.X548_09295 4.34e-138 450.0 COG3752@1|root,COG3752@2|Bacteria,1MXCP@1224|Proteobacteria,1S26M@1236|Gammaproteobacteria,1XBWB@135614|Xanthomonadales 135614|Xanthomonadales S 3-oxo-5-alpha-steroid 4-dehydrogenase - - - - - - - - - - - - DUF1295 SRR25158195_k127_4104720_4 391008.Smal_1953 1.03e-64 224.0 2ENQY@1|root,33GC5@2|Bacteria,1NK4V@1224|Proteobacteria,1TB5P@1236|Gammaproteobacteria,1X7M4@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF2878) - - - - - - - - - - - - DUF2878 SRR25158195_k127_4107417_1 522373.Smlt4138 2.277e-149 477.0 COG0840@1|root,COG5000@1|root,COG0840@2|Bacteria,COG5000@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X3KX@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - HAMP,MCPsignal,dCache_1 SRR25158195_k127_4107417_0 391008.Smal_3538 5.831e-168 530.0 COG0451@1|root,COG0451@2|Bacteria,1QP8J@1224|Proteobacteria,1RP88@1236|Gammaproteobacteria,1X5KQ@135614|Xanthomonadales 135614|Xanthomonadales M Male sterility protein - - 5.1.3.2 ko:K01784 ko00052,ko00520,ko01100,map00052,map00520,map01100 M00361,M00362,M00632 R00291,R02984 RC00289 ko00000,ko00001,ko00002,ko01000 - - - Epimerase SRR25158195_k127_4107417_3 522373.Smlt4140 7.608e-33 130.0 COG3729@1|root,COG3729@2|Bacteria,1NH1J@1224|Proteobacteria,1SIT6@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Stress-induced bacterial acidophilic repeat motif - - - - - - - - - - - - KGG SRR25158195_k127_4107417_2 1429851.X548_16365 1.18e-45 166.0 COG0346@1|root,COG0346@2|Bacteria,1RH4X@1224|Proteobacteria,1SAVS@1236|Gammaproteobacteria,1XAWA@135614|Xanthomonadales 135614|Xanthomonadales E Glyoxalase-like domain - - - - - - - - - - - - Glyoxalase SRR25158195_k127_4120325_4 391008.Smal_0531 6.09e-40 148.0 COG0454@1|root,COG0456@2|Bacteria,1RIE6@1224|Proteobacteria,1S9G0@1236|Gammaproteobacteria,1X6EJ@135614|Xanthomonadales 135614|Xanthomonadales K Ribosomal-protein-alanine acetyltransferase rimI - 2.3.1.128 ko:K03789 - - - - ko00000,ko01000,ko03009 - - - Acetyltransf_1 SRR25158195_k127_4120325_2 522373.Smlt0672 2.643e-140 450.0 COG0697@1|root,COG0697@2|Bacteria,1R46X@1224|Proteobacteria,1RYTA@1236|Gammaproteobacteria 1236|Gammaproteobacteria EG of the drug metabolite transporter (DMT) superfamily - - - - - - - - - - - - EamA SRR25158195_k127_4120325_0 522373.Smlt0673 0.0 1854.0 COG0525@1|root,COG0525@2|Bacteria,1MV7B@1224|Proteobacteria,1RNEB@1236|Gammaproteobacteria,1X2YZ@135614|Xanthomonadales 135614|Xanthomonadales J amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner valS GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 ko:K01873 ko00970,map00970 M00359,M00360 R03665 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 - - - Anticodon_1,Val_tRNA-synt_C,tRNA-synt_1 SRR25158195_k127_4120325_3 391008.Smal_0535 5.388e-87 289.0 COG2927@1|root,COG2927@2|Bacteria,1MZ3V@1224|Proteobacteria,1S94K@1236|Gammaproteobacteria,1X6H8@135614|Xanthomonadales 135614|Xanthomonadales L dna polymerase III holC - 2.7.7.7 ko:K02339 ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440 M00260 R00375,R00376,R00377,R00378 RC02795 ko00000,ko00001,ko00002,ko01000,ko03032,ko03400 - - - DNA_pol3_chi SRR25158195_k127_4120325_1 522373.Smlt0675 2.518e-274 845.0 COG0260@1|root,COG0260@2|Bacteria,1MUF9@1224|Proteobacteria,1RNM1@1236|Gammaproteobacteria,1X38B@135614|Xanthomonadales 135614|Xanthomonadales E Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides pepA - 3.4.11.1 ko:K01255 ko00480,ko01100,map00480,map01100 - R00899,R04951 RC00096,RC00141 ko00000,ko00001,ko01000,ko01002 - - - Peptidase_M17,Peptidase_M17_N SRR25158195_k127_4121699_4 522373.Smlt4070 8.86e-51 182.0 COG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,1RMDA@1236|Gammaproteobacteria,1X3EU@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane efflux protein oprM - - ko:K18139,ko:K18323 ko01501,ko02020,ko02024,map01501,map02020,map02024 M00642,M00643,M00645,M00647,M00718,M00768,M00822 - - ko00000,ko00001,ko00002,ko01504,ko02000 1.B.17,2.A.6.2,2.A.6.2.41 - - OEP SRR25158195_k127_4121699_0 522373.Smlt4071 0.0 1942.0 COG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,1RMBN@1236|Gammaproteobacteria,1X34J@135614|Xanthomonadales 135614|Xanthomonadales V Efflux pump membrane transporter mexB - - ko:K03296,ko:K18138 ko01501,ko01503,map01501,map01503 M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000 2.A.6.2 - - ACR_tran SRR25158195_k127_4121699_2 1429851.X548_16000 3.34e-218 684.0 COG0845@1|root,COG0845@2|Bacteria,1MU78@1224|Proteobacteria,1RPI1@1236|Gammaproteobacteria,1X3FF@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family mexA - - ko:K03585 ko01501,ko01503,map01501,map01503 M00646,M00647,M00699,M00718 - - ko00000,ko00001,ko00002,ko01504,ko02000,ko03036 2.A.6.2,8.A.1.6 - - Biotin_lipoyl_2,HlyD,HlyD_D23 SRR25158195_k127_4121699_3 391008.Smal_3469 2.969e-130 418.0 COG1309@1|root,COG1309@2|Bacteria,1N659@1224|Proteobacteria,1RPXN@1236|Gammaproteobacteria,1X8FM@135614|Xanthomonadales 135614|Xanthomonadales K Bacterial regulatory proteins, tetR family - - - ko:K03577 - M00647 - - ko00000,ko00002,ko03000 - - - TetR_C_2,TetR_N SRR25158195_k127_4121699_1 522373.Smlt4075 5.834e-281 865.0 COG1220@1|root,COG1220@2|Bacteria,1MVK9@1224|Proteobacteria,1RMYV@1236|Gammaproteobacteria,1X3BM@135614|Xanthomonadales 135614|Xanthomonadales O this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis hslU - - ko:K03667 - - - - ko00000,ko03110 - - - AAA_2,ClpB_D2-small SRR25158195_k127_4123949_4 522373.Smlt2336 2.526e-94 310.0 COG3570@1|root,COG3570@2|Bacteria,1MW4R@1224|Proteobacteria,1SFMV@1236|Gammaproteobacteria,1X8FJ@135614|Xanthomonadales 135614|Xanthomonadales V Aminoglycoside/hydroxyurea antibiotic resistance kinase - - 2.7.1.72 ko:K04343 - M00766 R02225 RC00002,RC00078 br01600,ko00000,ko00002,ko01000,ko01504 - - - APH_6_hur SRR25158195_k127_4123949_6 391008.Smal_1922 1.191e-65 225.0 COG2127@1|root,COG2127@2|Bacteria,1MZU8@1224|Proteobacteria,1S8Z7@1236|Gammaproteobacteria,1X72N@135614|Xanthomonadales 135614|Xanthomonadales S Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation clpS - - ko:K06891 - - - - ko00000 - - - ClpS SRR25158195_k127_4123949_5 522373.Smlt2334 4.083e-79 273.0 2EHEF@1|root,33B6D@2|Bacteria,1NM8N@1224|Proteobacteria,1T49V@1236|Gammaproteobacteria,1X7W0@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_4123949_3 522373.Smlt2333 1.258e-95 313.0 COG1051@1|root,COG1051@2|Bacteria,1N03W@1224|Proteobacteria,1S970@1236|Gammaproteobacteria,1X6IT@135614|Xanthomonadales 135614|Xanthomonadales F Belongs to the Nudix hydrolase family. NudJ subfamily nudJ - - - - - - - - - - - NUDIX SRR25158195_k127_4123949_0 522373.Smlt2332 1.808e-251 779.0 COG0482@1|root,COG0482@2|Bacteria,1MUT1@1224|Proteobacteria,1RMAK@1236|Gammaproteobacteria,1X446@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 mnmA GO:0002097,GO:0002098,GO:0002143,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 2.8.1.13 ko:K00566 ko04122,map04122 - R08700 RC02313,RC02315 ko00000,ko00001,ko01000,ko03016 - - - tRNA_Me_trans SRR25158195_k127_4123949_2 522373.Smlt2331 8.252e-121 389.0 COG2915@1|root,COG2915@2|Bacteria,1RI8B@1224|Proteobacteria,1RPCC@1236|Gammaproteobacteria,1X68Q@135614|Xanthomonadales 135614|Xanthomonadales S High frequency lysogenization protein HflD homolog hflD - - ko:K07153 - - - - ko00000 - - - DUF489 SRR25158195_k127_4123949_1 1429851.X548_08450 5.26e-238 740.0 COG0840@1|root,COG0840@2|Bacteria,1RBQH@1224|Proteobacteria,1S2V1@1236|Gammaproteobacteria,1X40J@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - ko:K03406 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - MCPsignal SRR25158195_k127_4124600_0 1443665.JACA01000022_gene5195 6.376e-17 88.0 COG1044@1|root,COG1044@2|Bacteria,4PNUM@976|Bacteroidetes,1IKV3@117743|Flavobacteriia,2YJR5@290174|Aquimarina 976|Bacteroidetes M Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - - - - - - - - - - - SRR25158195_k127_4124600_2 264462.Bd2439 1.071e-05 58.0 COG0729@1|root,COG3210@1|root,COG0729@2|Bacteria,COG3210@2|Bacteria 2|Bacteria U domain, Protein - - - ko:K21449 - - - - ko00000,ko02000 1.B.40.2 - - Bac_surface_Ag,Beta_helix,PATR,Peptidase_S74 SRR25158195_k127_4124600_1 391587.KAOT1_03567 5.916e-15 88.0 COG1044@1|root,COG1044@2|Bacteria,4NT1W@976|Bacteroidetes,1I4EU@117743|Flavobacteriia 976|Bacteroidetes M Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - - - - - - - - - - - SRR25158195_k127_4125769_2 522373.Smlt3530 4.46e-134 428.0 COG1793@1|root,COG1793@2|Bacteria,1MV3S@1224|Proteobacteria,1RY5I@1236|Gammaproteobacteria,1X3ZC@135614|Xanthomonadales 135614|Xanthomonadales L Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA - - 6.5.1.1,6.5.1.6,6.5.1.7 ko:K10747 ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 - R00381,R00382,R10822,R10823 RC00005 ko00000,ko00001,ko01000,ko03032,ko03400 - - - DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N SRR25158195_k127_4125769_0 522373.Smlt3531 0.0 1426.0 COG1201@1|root,COG1201@2|Bacteria,1MUSW@1224|Proteobacteria,1RWZA@1236|Gammaproteobacteria,1X2ZY@135614|Xanthomonadales 135614|Xanthomonadales L DEAD DEAH box helicase lhr2 - - ko:K03724 - - - - ko00000,ko01000,ko03400 - - - DEAD,DEAD_assoc,Helicase_C SRR25158195_k127_4125769_3 340.xcc-b100_3015 2.52e-74 257.0 COG1407@1|root,COG1407@2|Bacteria,1RC5G@1224|Proteobacteria,1SCIW@1236|Gammaproteobacteria,1X5YY@135614|Xanthomonadales 135614|Xanthomonadales S Phosphoesterase - - - ko:K06953 - - - - ko00000 - - - Metallophos SRR25158195_k127_4125769_1 522373.Smlt3534 3.651e-242 753.0 COG0654@1|root,COG0654@2|Bacteria,1MUZP@1224|Proteobacteria,1S37X@1236|Gammaproteobacteria,1X2Z7@135614|Xanthomonadales 135614|Xanthomonadales CH Oxidoreductase - - - - - - - - - - - - FAD_binding_3 SRR25158195_k127_4142318_0 522373.Smlt3096 1.525e-271 838.0 COG0128@1|root,COG0128@2|Bacteria,1MWMK@1224|Proteobacteria,1RQ8U@1236|Gammaproteobacteria,1X36A@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate aroA GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 ko:K00800 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R03460 RC00350 ko00000,ko00001,ko00002,ko01000 - - - EPSP_synthase SRR25158195_k127_4142318_1 1429851.X548_11160 5.96e-87 293.0 COG0810@1|root,COG0810@2|Bacteria,1PDQZ@1224|Proteobacteria,1SWIV@1236|Gammaproteobacteria,1X88P@135614|Xanthomonadales 135614|Xanthomonadales M Gram-negative bacterial TonB protein C-terminal - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C SRR25158195_k127_4142318_2 391008.Smal_2536 2.608e-55 194.0 COG0810@1|root,COG0810@2|Bacteria,1MZPX@1224|Proteobacteria,1S2VT@1236|Gammaproteobacteria,1XCIY@135614|Xanthomonadales 135614|Xanthomonadales M COG0810 Periplasmic protein TonB, links inner and outer membranes - - - ko:K03832 - - - - ko00000,ko02000 2.C.1.1 - - TonB_C SRR25158195_k127_416241_1 1118235.CAJH01000019_gene1043 1.432e-189 598.0 COG1609@1|root,COG1609@2|Bacteria,1MVUR@1224|Proteobacteria,1RN2K@1236|Gammaproteobacteria,1X3V1@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 SRR25158195_k127_416241_0 1118235.CAJH01000019_gene1042 4.075e-210 659.0 COG0738@1|root,COG0738@2|Bacteria,1MXDC@1224|Proteobacteria,1RQX9@1236|Gammaproteobacteria,1X5V9@135614|Xanthomonadales 135614|Xanthomonadales G permease fucP - - ko:K02429 - - - - ko00000,ko02000 2.A.1.7 - - MFS_1 SRR25158195_k127_416241_2 1118235.CAJH01000019_gene1041 1.126e-28 117.0 COG1629@1|root,COG1629@2|Bacteria,1MV8W@1224|Proteobacteria,1RQEQ@1236|Gammaproteobacteria,1X41Y@135614|Xanthomonadales 135614|Xanthomonadales P TonB-dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_41701_2 1429851.X548_18510 4.163e-55 198.0 293NE@1|root,2ZR45@2|Bacteria,1P8MP@1224|Proteobacteria,1SVR1@1236|Gammaproteobacteria,1X7ZR@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_41701_0 391008.Smal_3933 0.0 1562.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1N4G0@1224|Proteobacteria,1RRIM@1236|Gammaproteobacteria,1X37H@135614|Xanthomonadales 135614|Xanthomonadales EU peptidase - - - - - - - - - - - - DPPIV_N,PD40,Peptidase_S9 SRR25158195_k127_41701_1 391008.Smal_3934 7.469e-70 241.0 COG1051@1|root,COG1051@2|Bacteria,1N7ZF@1224|Proteobacteria,1SFIT@1236|Gammaproteobacteria,1XC22@135614|Xanthomonadales 135614|Xanthomonadales F NUDIX domain - - - - - - - - - - - - NUDIX SRR25158195_k127_419536_0 522373.Smlt2382 7.797e-302 930.0 COG4251@1|root,COG4251@2|Bacteria,1NSQ1@1224|Proteobacteria,1RYEF@1236|Gammaproteobacteria,1XDA7@135614|Xanthomonadales 135614|Xanthomonadales T Phytochrome region - - - - - - - - - - - - GAF,HATPase_c,HisKA,PAS_2,PHY SRR25158195_k127_419536_2 522373.Smlt2381 1.154e-75 262.0 COG0745@1|root,COG0745@2|Bacteria,1RD6H@1224|Proteobacteria,1S623@1236|Gammaproteobacteria,1X7MU@135614|Xanthomonadales 135614|Xanthomonadales T cheY-homologous receiver domain - - - - - - - - - - - - Response_reg SRR25158195_k127_419536_1 522373.Smlt2380 6.734e-76 259.0 COG0745@1|root,COG0784@1|root,COG4191@1|root,COG0745@2|Bacteria,COG0784@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,1RP53@1236|Gammaproteobacteria,1X55J@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HATPase_c,HisKA,PAS_4,Response_reg SRR25158195_k127_420287_1 1429851.X548_12960 2.134e-154 497.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RS1Q@1236|Gammaproteobacteria,1X39R@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_420287_0 1385515.N791_02360 1.051e-303 944.0 COG1506@1|root,COG1506@2|Bacteria,1MUJ3@1224|Proteobacteria,1RPAW@1236|Gammaproteobacteria,1X3G4@135614|Xanthomonadales 135614|Xanthomonadales E X-Pro dipeptidyl-peptidase (S15 family) - - - - - - - - - - - - Peptidase_S9 SRR25158195_k127_422512_1 522373.Smlt2633 1.014e-101 333.0 COG2094@1|root,COG2094@2|Bacteria,1RE0A@1224|Proteobacteria,1S9CM@1236|Gammaproteobacteria,1X6BU@135614|Xanthomonadales 135614|Xanthomonadales L Belongs to the DNA glycosylase MPG family - GO:0003674,GO:0003824,GO:0003905,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.2.2.21 ko:K03652 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Pur_DNA_glyco SRR25158195_k127_422512_2 522373.Smlt2634 1.098e-22 107.0 2EKH8@1|root,33E79@2|Bacteria,1QBBW@1224|Proteobacteria,1T6WM@1236|Gammaproteobacteria,1X8B9@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_422512_0 522373.Smlt2636 1.653e-125 402.0 COG0708@1|root,COG0708@2|Bacteria,1MVII@1224|Proteobacteria,1RN4H@1236|Gammaproteobacteria,1X3WA@135614|Xanthomonadales 135614|Xanthomonadales L exodeoxyribonuclease iii xthA2 - 3.1.11.2 ko:K01142 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Exo_endo_phos SRR25158195_k127_423674_1 391008.Smal_0840 6.617e-183 574.0 COG0760@1|root,COG0760@2|Bacteria,1MWV0@1224|Proteobacteria,1RMT5@1236|Gammaproteobacteria,1X4BU@135614|Xanthomonadales 135614|Xanthomonadales O peptidylprolyl isomerase ppiD - 5.2.1.8 ko:K03770 - - - - ko00000,ko01000,ko03110 - - - Rotamase,Rotamase_2,Rotamase_3,SurA_N_3 SRR25158195_k127_423674_0 391008.Smal_0841 2.385e-226 705.0 COG0741@1|root,COG1388@1|root,COG0741@2|Bacteria,COG1388@2|Bacteria,1MWKE@1224|Proteobacteria,1RMFZ@1236|Gammaproteobacteria,1X5UM@135614|Xanthomonadales 135614|Xanthomonadales M COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - ko:K08307 - - - - ko00000,ko01000,ko01011 - - - LysM,SLT SRR25158195_k127_423674_2 522373.Smlt0995 2.587e-154 493.0 COG0491@1|root,COG0491@2|Bacteria,1MU8Q@1224|Proteobacteria,1S22I@1236|Gammaproteobacteria,1X4E0@135614|Xanthomonadales 135614|Xanthomonadales S Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid gloB - 3.1.2.6 ko:K01069 ko00620,map00620 - R01736 RC00004,RC00137 ko00000,ko00001,ko01000 - - - HAGH_C,Lactamase_B SRR25158195_k127_423674_3 391008.Smal_0843 2.892e-54 191.0 COG0500@1|root,COG2226@2|Bacteria,1QTWC@1224|Proteobacteria,1S5QU@1236|Gammaproteobacteria,1X7H7@135614|Xanthomonadales 135614|Xanthomonadales Q Methyl-transferase - - - - - - - - - - - - Methyltransf_11 SRR25158195_k127_433573_2 1429851.X548_16435 0.0008562 43.0 COG2267@1|root,COG2267@2|Bacteria,1MUG8@1224|Proteobacteria,1RMFE@1236|Gammaproteobacteria,1X43J@135614|Xanthomonadales 135614|Xanthomonadales I Alpha beta hydrolase - - 1.11.1.10 ko:K00433 - - - - ko00000,ko01000 - - - Abhydrolase_1 SRR25158195_k127_433573_0 391008.Smal_0119 8.371e-220 687.0 COG2821@1|root,COG2821@2|Bacteria,1MXD4@1224|Proteobacteria,1RP7K@1236|Gammaproteobacteria,1XAGR@135614|Xanthomonadales 135614|Xanthomonadales M Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and or cell division - - - ko:K08304 - - - - ko00000,ko01000,ko01011 - GH102 - 3D,MltA SRR25158195_k127_433573_1 522373.Smlt0154 7.341e-146 465.0 COG3023@1|root,COG3023@2|Bacteria,1RDHU@1224|Proteobacteria,1RMDN@1236|Gammaproteobacteria,1XCKJ@135614|Xanthomonadales 135614|Xanthomonadales V N-acetylmuramoyl-L-alanine amidase - - 3.5.1.28 ko:K01447 - - R04112 RC00064,RC00141 ko00000,ko01000 - - - Amidase_2 SRR25158195_k127_435829_2 391008.Smal_0125 2.855e-90 301.0 COG2032@1|root,COG2032@2|Bacteria,1RGV4@1224|Proteobacteria,1S6KW@1236|Gammaproteobacteria,1XC3P@135614|Xanthomonadales 135614|Xanthomonadales P Destroys radicals which are normally produced within the cells and which are toxic to biological systems - - 1.15.1.1 ko:K04565 ko04146,ko04213,ko05014,ko05016,ko05020,map04146,map04213,map05014,map05016,map05020 - - - ko00000,ko00001,ko01000 - - - Sod_Cu SRR25158195_k127_435829_1 391008.Smal_0124 2.18e-99 327.0 COG2032@1|root,COG2032@2|Bacteria,1N26J@1224|Proteobacteria,1S8WE@1236|Gammaproteobacteria,1XC3N@135614|Xanthomonadales 135614|Xanthomonadales P Destroys radicals which are normally produced within the cells and which are toxic to biological systems - - 1.15.1.1 ko:K04565 ko04146,ko04213,ko05014,ko05016,ko05020,map04146,map04213,map05014,map05016,map05020 - - - ko00000,ko00001,ko01000 - - - Sod_Cu SRR25158195_k127_435829_0 522373.Smlt0159 2.493e-191 599.0 COG2204@1|root,COG2204@2|Bacteria,1MU0N@1224|Proteobacteria,1RMCK@1236|Gammaproteobacteria,1X3NB@135614|Xanthomonadales 135614|Xanthomonadales T Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains ntrC - - ko:K07712 ko02020,map02020 M00497 - - ko00000,ko00001,ko00002,ko02022 - - - HTH_8,Response_reg,Sigma54_activat SRR25158195_k127_440502_0 929556.Solca_3818 1.036e-54 213.0 COG0457@1|root,COG2114@1|root,COG5616@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,COG5616@2|Bacteria,4NFW7@976|Bacteroidetes,1IR3J@117747|Sphingobacteriia 976|Bacteroidetes K Tetratricopeptide repeat - - - - - - - - - - - - Guanylate_cyc,HTH_18,TPR_16,TPR_2,TPR_8 SRR25158195_k127_440502_1 1535422.ND16A_3875 2.354e-11 65.0 COG0457@1|root,COG5616@1|root,COG0457@2|Bacteria,COG5616@2|Bacteria,1MUMZ@1224|Proteobacteria,1T234@1236|Gammaproteobacteria,2Q73E@267889|Colwelliaceae 1236|Gammaproteobacteria K Adenylate cyclase - - - - - - - - - - - - TPR_16 SRR25158195_k127_441560_8 391008.Smal_3356 1.782e-29 118.0 COG2197@1|root,COG2197@2|Bacteria,1P4TD@1224|Proteobacteria,1RYY9@1236|Gammaproteobacteria,1X48T@135614|Xanthomonadales 135614|Xanthomonadales KT LuxR family transcriptional regulator - - - - - - - - - - - - GerE,Response_reg SRR25158195_k127_441560_5 522373.Smlt3947 6.227e-204 647.0 COG1840@1|root,COG1840@2|Bacteria,1MY20@1224|Proteobacteria,1RMBC@1236|Gammaproteobacteria,1X4FX@135614|Xanthomonadales 135614|Xanthomonadales P ABC transporter substrate-binding protein afuA - - ko:K02012 ko02010,map02010 M00190 - - ko00000,ko00001,ko00002,ko02000 3.A.1.10 - - SBP_bac_11 SRR25158195_k127_441560_2 391008.Smal_3358 4.741e-266 831.0 COG0642@1|root,COG2205@2|Bacteria,1N1Z2@1224|Proteobacteria,1T1KQ@1236|Gammaproteobacteria,1X3RC@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase tctE - 2.7.13.3 ko:K07649 ko02020,map02020 M00457 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - 2CSK_N,HATPase_c,HisKA SRR25158195_k127_441560_7 1118235.CAJH01000021_gene1310 7.986e-135 432.0 COG0745@1|root,COG0745@2|Bacteria,1RBE8@1224|Proteobacteria,1SYER@1236|Gammaproteobacteria,1X4A6@135614|Xanthomonadales 135614|Xanthomonadales K Regulator tctD - - ko:K07774 ko02020,map02020 M00457 - - ko00000,ko00001,ko00002,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_441560_3 522373.Smlt3950 2.888e-255 789.0 COG3746@1|root,COG3746@2|Bacteria,1RG6T@1224|Proteobacteria,1S412@1236|Gammaproteobacteria,1X3QS@135614|Xanthomonadales 135614|Xanthomonadales P phosphate-selective porin - - - ko:K07221 - - - - ko00000,ko02000 1.B.5.1 - - Porin_O_P SRR25158195_k127_441560_1 522373.Smlt3951 1.409e-271 839.0 COG2851@1|root,COG2851@2|Bacteria,1N25B@1224|Proteobacteria,1RR4W@1236|Gammaproteobacteria,1X32V@135614|Xanthomonadales 135614|Xanthomonadales C Citrate transporter citM - - ko:K03300 - - - - ko00000 2.A.11 - - CitMHS SRR25158195_k127_441560_6 391008.Smal_3362 8.384e-154 487.0 COG1028@1|root,COG1028@2|Bacteria,1MUEV@1224|Proteobacteria,1RNH2@1236|Gammaproteobacteria,1X5WJ@135614|Xanthomonadales 135614|Xanthomonadales IQ Catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis phbB - 1.1.1.36 ko:K00023 ko00630,ko00650,ko01120,ko01200,map00630,map00650,map01120,map01200 M00373 R01779,R01977 RC00103,RC00117 ko00000,ko00001,ko00002,ko01000 - - - adh_short_C2 SRR25158195_k127_441560_0 522373.Smlt3954 0.0 1478.0 COG4774@1|root,COG4774@2|Bacteria,1QU2Y@1224|Proteobacteria,1T1NS@1236|Gammaproteobacteria,1XCSC@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane protein beta-barrel family - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_441560_4 522373.Smlt3955 1.078e-216 673.0 COG3930@1|root,COG3930@2|Bacteria,1PYFH@1224|Proteobacteria,1RP1J@1236|Gammaproteobacteria,1X34Y@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - DUF1704 SRR25158195_k127_451011_0 522373.Smlt2737 0.0 1097.0 COG2911@1|root,COG2911@2|Bacteria,1QXZF@1224|Proteobacteria,1T4A0@1236|Gammaproteobacteria,1XD9H@135614|Xanthomonadales 135614|Xanthomonadales S Filamentous haemagglutinin family outer membrane protein - - - - - - - - - - - - DUF3739,Haemagg_act SRR25158195_k127_45284_1 398527.Bphyt_2645 1.344e-28 125.0 COG3673@1|root,COG3673@2|Bacteria,1R405@1224|Proteobacteria,2VSRP@28216|Betaproteobacteria,1K0D2@119060|Burkholderiaceae 28216|Betaproteobacteria S Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - - - - - - - - - - DUF2235 SRR25158195_k127_45284_2 292.DM42_5103 1.709e-19 101.0 2EN5F@1|root,33FTE@2|Bacteria,1NIX8@1224|Proteobacteria,2W6A9@28216|Betaproteobacteria,1KB1D@119060|Burkholderiaceae 28216|Betaproteobacteria S Domain of unknown function (DUF4123) - - - - - - - - - - - - DUF4123 SRR25158195_k127_45284_0 1131451.O1K_00225 1.678e-40 154.0 COG3501@1|root,COG4253@1|root,COG3501@2|Bacteria,COG4253@2|Bacteria 2|Bacteria T Rhs element vgr protein - - - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - DUF2345,Phage_GPD,T6SS_Vgr SRR25158195_k127_467491_3 522373.Smlt1498 5.13e-117 384.0 COG4775@1|root,COG4775@2|Bacteria,1MU0D@1224|Proteobacteria,1RMAP@1236|Gammaproteobacteria,1X527@135614|Xanthomonadales 135614|Xanthomonadales M Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane bamA - - ko:K07277 - - - - ko00000,ko02000,ko03029 1.B.33 - - Bac_surface_Ag,POTRA SRR25158195_k127_467491_0 522373.Smlt1499 5.036e-281 865.0 COG0750@1|root,COG0750@2|Bacteria,1MU91@1224|Proteobacteria,1RMIX@1236|Gammaproteobacteria,1X3KG@135614|Xanthomonadales 135614|Xanthomonadales M zinc metalloprotease rseP - - ko:K11749 ko02024,ko04112,map02024,map04112 - - - ko00000,ko00001,ko01000,ko01002 - - - PDZ,PDZ_2,Peptidase_M50 SRR25158195_k127_467491_1 1429851.X548_05025 7.361e-225 712.0 COG0743@1|root,COG0743@2|Bacteria,1MU4G@1224|Proteobacteria,1RNNW@1236|Gammaproteobacteria,1X4I6@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) dxr GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 ko:K00099 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05688 RC01452 ko00000,ko00001,ko00002,ko01000 - - - DXPR_C,DXP_redisom_C,DXP_reductoisom SRR25158195_k127_467491_2 1429851.X548_05030 2.14e-163 516.0 COG0575@1|root,COG0575@2|Bacteria,1MWSV@1224|Proteobacteria,1RQ6M@1236|Gammaproteobacteria,1X5GA@135614|Xanthomonadales 135614|Xanthomonadales I Belongs to the CDS family cdsA - 2.7.7.41 ko:K00981 ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070 M00093 R01799 RC00002 ko00000,ko00001,ko00002,ko01000 - - - CTP_transf_1 SRR25158195_k127_473443_0 391008.Smal_3911 7.148e-177 556.0 COG0304@1|root,COG0304@2|Bacteria,1N91E@1224|Proteobacteria,1RMPP@1236|Gammaproteobacteria,1X36X@135614|Xanthomonadales 135614|Xanthomonadales IQ Belongs to the beta-ketoacyl-ACP synthases family - - 2.3.1.41 ko:K00647 ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212 M00083,M00572 R04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119 RC00039,RC02728,RC02729,RC02888 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Ketoacyl-synt_C,ketoacyl-synt SRR25158195_k127_473443_2 391008.Smal_3910 1.502e-81 274.0 COG4706@1|root,COG4706@2|Bacteria,1N00A@1224|Proteobacteria,1S9E9@1236|Gammaproteobacteria,1X8FT@135614|Xanthomonadales 135614|Xanthomonadales I 3-hydroxylacyl-(Acyl carrier protein) dehydratase - - - - - - - - - - - - - SRR25158195_k127_473443_1 391008.Smal_3909 7.855e-141 452.0 COG1028@1|root,COG1028@2|Bacteria,1MUPY@1224|Proteobacteria,1RMCB@1236|Gammaproteobacteria,1X4MA@135614|Xanthomonadales 135614|Xanthomonadales IQ Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis fabG - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 SRR25158195_k127_484091_1 257310.BB2799 2.056e-18 89.0 COG3062@1|root,COG3062@2|Bacteria,1NF69@1224|Proteobacteria,2VXF7@28216|Betaproteobacteria,3T82T@506|Alcaligenaceae 28216|Betaproteobacteria P protein involved in formation of periplasmic nitrate reductase napD - - ko:K02570 - - - - ko00000 - - - NapD SRR25158195_k127_484091_2 1532557.JL37_16625 6.079e-12 70.0 COG4459@1|root,COG4459@2|Bacteria,1NGRU@1224|Proteobacteria,2VYQV@28216|Betaproteobacteria,3T8FA@506|Alcaligenaceae 28216|Betaproteobacteria C Nitrate reductase napE - - ko:K02571 - - - - ko00000 - - - NapE SRR25158195_k127_484091_0 296591.Bpro_3038 1.174e-151 490.0 COG2801@1|root,COG2801@2|Bacteria,1MXKK@1224|Proteobacteria,2VJQH@28216|Betaproteobacteria,4AHH6@80864|Comamonadaceae 28216|Betaproteobacteria L Integrase, catalytic region - - - - - - - - - - - - rve SRR25158195_k127_494389_1 1157708.KB907460_gene1422 9.247e-107 362.0 COG3831@1|root,COG3831@2|Bacteria 2|Bacteria - - - - - - - - - - - - - - - SRR25158195_k127_494389_0 522373.Smlt2066 0.0 1117.0 COG0475@1|root,COG1226@1|root,COG0475@2|Bacteria,COG1226@2|Bacteria,1MV34@1224|Proteobacteria,1RNVR@1236|Gammaproteobacteria,1X3DT@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family kefB - - ko:K11747 - - - - ko00000,ko02000 2.A.37.1.2 - - Na_H_Exchanger,TrkA_N SRR25158195_k127_494389_2 391008.Smal_1666 2.38e-57 199.0 COG0476@1|root,COG0607@1|root,COG0476@2|Bacteria,COG0607@2|Bacteria,1MW7H@1224|Proteobacteria,1RPJ3@1236|Gammaproteobacteria,1X3YQ@135614|Xanthomonadales 135614|Xanthomonadales H ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase moeB - - - - - - - - - - - Rhodanese,ThiF SRR25158195_k127_506079_0 1429851.X548_01570 1.006e-119 386.0 COG3332@1|root,COG3332@2|Bacteria,1RDBS@1224|Proteobacteria,1S43Y@1236|Gammaproteobacteria,1X5SW@135614|Xanthomonadales 135614|Xanthomonadales S Transport and Golgi organisation 2 - - - - - - - - - - - - TANGO2 SRR25158195_k127_506079_1 522373.Smlt0743 9.314e-75 252.0 COG0313@1|root,COG0313@2|Bacteria,1MU0E@1224|Proteobacteria,1RM7U@1236|Gammaproteobacteria,1X4QV@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA rsmI - 2.1.1.198 ko:K07056 - - - - ko00000,ko01000,ko03009 - - - TP_methylase SRR25158195_k127_510307_5 391008.Smal_2164 7.647e-96 317.0 COG1276@1|root,COG1276@2|Bacteria,1NHA2@1224|Proteobacteria,1RRUC@1236|Gammaproteobacteria,1X8DD@135614|Xanthomonadales 135614|Xanthomonadales P Copper resistance protein D - - - ko:K07245 - - - - ko00000,ko02000 9.B.62.1 - - CopD SRR25158195_k127_510307_3 522373.Smlt2693 6.631e-130 422.0 COG0745@1|root,COG0745@2|Bacteria,1MU67@1224|Proteobacteria,1RNWH@1236|Gammaproteobacteria,1X413@135614|Xanthomonadales 135614|Xanthomonadales T Transcriptional regulatory protein, C terminal - - - ko:K07665 ko02020,map02020 M00452,M00745 - - ko00000,ko00001,ko00002,ko01504,ko02022 - - - Response_reg,Trans_reg_C SRR25158195_k127_510307_1 391008.Smal_2166 1.597e-221 700.0 COG0642@1|root,COG3850@1|root,COG2205@2|Bacteria,COG3850@2|Bacteria,1MW8M@1224|Proteobacteria,1RNDA@1236|Gammaproteobacteria,1XD9F@135614|Xanthomonadales 135614|Xanthomonadales T Member of a two-component regulatory system - - 2.7.13.3 ko:K07644 ko02020,map02020 M00452,M00745 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko01504,ko02022 - - - HAMP,HATPase_c,HisKA SRR25158195_k127_510307_2 522373.Smlt2695 3.337e-164 520.0 COG0583@1|root,COG0583@2|Bacteria,1MV06@1224|Proteobacteria,1RPI0@1236|Gammaproteobacteria,1X516@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_510307_4 1429851.X548_09620 4.247e-126 408.0 COG1028@1|root,COG1028@2|Bacteria,1MU73@1224|Proteobacteria,1RR5Q@1236|Gammaproteobacteria,1X44T@135614|Xanthomonadales 135614|Xanthomonadales IQ NAD dependent epimerase/dehydratase family - - 1.1.1.100 ko:K00059 ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212 M00083,M00572 R04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671 RC00029,RC00117 ko00000,ko00001,ko00002,ko01000,ko01004 - - - adh_short_C2 SRR25158195_k127_510307_0 522373.Smlt2702 0.0 1569.0 COG3537@1|root,COG3537@2|Bacteria,1MXCY@1224|Proteobacteria,1RYV7@1236|Gammaproteobacteria,1XC59@135614|Xanthomonadales 135614|Xanthomonadales G Hydrolase - - - - - - - - - - - - Glyco_hydro_92 SRR25158195_k127_510307_7 522373.Smlt2703 1.019e-49 187.0 COG0526@1|root,COG0526@2|Bacteria,1MZ6D@1224|Proteobacteria,1SBGZ@1236|Gammaproteobacteria,1XBXT@135614|Xanthomonadales 135614|Xanthomonadales CO Thioredoxin - - - ko:K03671 ko04621,ko05418,map04621,map05418 - - - ko00000,ko00001,ko03110 - - - Thioredoxin SRR25158195_k127_510307_6 522373.Smlt2704 4.235e-73 250.0 COG5622@1|root,COG5622@2|Bacteria,1N6UG@1224|Proteobacteria,1SXZ1@1236|Gammaproteobacteria,1X71Q@135614|Xanthomonadales 135614|Xanthomonadales N Protein required for attachment to host cells atsE - - - - - - - - - - - Host_attach SRR25158195_k127_520401_1 391008.Smal_1144 3.197e-126 412.0 COG3300@1|root,COG5001@1|root,COG3300@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria,1RM8A@1236|Gammaproteobacteria,1X3PH@135614|Xanthomonadales 135614|Xanthomonadales T GGDEF domain - - 2.7.7.65 ko:K21023 ko02025,map02025 - - - ko00000,ko00001,ko01000 - - - EAL,GGDEF,HAMP,MHYT SRR25158195_k127_520401_0 522373.Smlt1366 2.042e-288 888.0 COG1066@1|root,COG1066@2|Bacteria,1MUJQ@1224|Proteobacteria,1RN2E@1236|Gammaproteobacteria,1X3DQ@135614|Xanthomonadales 135614|Xanthomonadales O DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function radA - - ko:K04485 - - - - ko00000,ko03400 - - - ATPase,ChlI SRR25158195_k127_520401_2 522373.Smlt1367 5.512e-113 369.0 COG0326@1|root,COG0326@2|Bacteria,1R7M2@1224|Proteobacteria,1RYD8@1236|Gammaproteobacteria,1X9XS@135614|Xanthomonadales 135614|Xanthomonadales O Hsp90 protein hsp90xc - - ko:K04079 ko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418 - - - ko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147 - - - HATPase_c_3,HSP90 SRR25158195_k127_522702_0 391008.Smal_3132 0.0 1031.0 COG0173@1|root,COG0173@2|Bacteria,1MUXB@1224|Proteobacteria,1RNMI@1236|Gammaproteobacteria,1X38N@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) aspS - 6.1.1.12 ko:K01876 ko00970,map00970 M00359,M00360 R05577 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - GAD,tRNA-synt_2,tRNA_anti-codon SRR25158195_k127_522702_2 1429851.X548_14365 9.613e-40 151.0 2ANVW@1|root,31DWE@2|Bacteria,1QB6W@1224|Proteobacteria,1T6QT@1236|Gammaproteobacteria,1X7XS@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_522702_1 391008.Smal_3130 9.551e-41 154.0 COG0454@1|root,COG0456@2|Bacteria,1RDH4@1224|Proteobacteria,1SCMT@1236|Gammaproteobacteria,1X66P@135614|Xanthomonadales 135614|Xanthomonadales K acetyltransferase - - 2.3.1.57 ko:K22441 - - - - ko00000,ko01000 - - - Acetyltransf_1,Acetyltransf_10 SRR25158195_k127_525192_0 1205753.A989_06528 6.785e-232 734.0 COG0840@1|root,COG0840@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X3KX@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - - - - - - - - - - MCPsignal SRR25158195_k127_525192_1 391008.Smal_1850 2.205e-147 469.0 COG5581@1|root,COG5581@2|Bacteria,1MX00@1224|Proteobacteria,1RY2F@1236|Gammaproteobacteria,1X7X4@135614|Xanthomonadales 135614|Xanthomonadales M Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility ycgR - - - - - - - - - - - PilZ,YcgR SRR25158195_k127_525192_2 391008.Smal_1849 8.133e-91 300.0 COG0835@1|root,COG0835@2|Bacteria,1RD1W@1224|Proteobacteria,1S26J@1236|Gammaproteobacteria,1X6CY@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis signal transduction protein cheW1 - - ko:K03408 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - CheW SRR25158195_k127_52783_9 391008.Smal_0286 2.303e-27 111.0 COG1109@1|root,COG1109@2|Bacteria,1MUA5@1224|Proteobacteria,1RMU8@1236|Gammaproteobacteria,1X4Z1@135614|Xanthomonadales 135614|Xanthomonadales G phosphomannomutase - - 5.4.2.2,5.4.2.8 ko:K15778 ko00010,ko00030,ko00051,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130 M00114 R00959,R01057,R01818,R08639 RC00408 ko00000,ko00001,ko00002,ko01000 - - - PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV SRR25158195_k127_52783_6 522373.Smlt0402 4.543e-95 314.0 COG0756@1|root,COG0756@2|Bacteria,1RA7P@1224|Proteobacteria,1S233@1236|Gammaproteobacteria,1X61M@135614|Xanthomonadales 135614|Xanthomonadales F This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA dut GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 ko:K01520 ko00240,ko00983,ko01100,map00240,map00983,map01100 M00053 R02100,R11896 RC00002 ko00000,ko00001,ko00002,ko01000,ko03400 - - - dUTPase SRR25158195_k127_52783_1 391008.Smal_0284 4.604e-248 770.0 COG0452@1|root,COG0452@2|Bacteria,1MVQP@1224|Proteobacteria,1RMKQ@1236|Gammaproteobacteria,1X3EH@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine dfp - 4.1.1.36,6.3.2.5 ko:K13038 ko00770,ko01100,map00770,map01100 M00120 R03269,R04231 RC00064,RC00090,RC00822 ko00000,ko00001,ko00002,ko01000 - - - DFP,Flavoprotein SRR25158195_k127_52783_5 522373.Smlt0400 2.166e-102 337.0 COG2197@1|root,COG2197@2|Bacteria,1MW84@1224|Proteobacteria,1RNK3@1236|Gammaproteobacteria,1X7DB@135614|Xanthomonadales 135614|Xanthomonadales T regulatory protein - - - ko:K07687 ko02020,ko02026,map02020,map02026 M00474 - - ko00000,ko00001,ko00002,ko02022 - - - GerE,Response_reg SRR25158195_k127_52783_4 522373.Smlt0399 1.615e-130 420.0 COG2003@1|root,COG2003@2|Bacteria,1MXZ5@1224|Proteobacteria,1RP86@1236|Gammaproteobacteria,1X4CG@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the UPF0758 family radC - - ko:K03630 - - - - ko00000 - - - RadC SRR25158195_k127_52783_0 391008.Smal_0280 0.0 1109.0 COG0018@1|root,COG0018@2|Bacteria,1MU4J@1224|Proteobacteria,1RPRC@1236|Gammaproteobacteria,1X30N@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA argS GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 ko:K01887 ko00970,map00970 M00359,M00360 R03646 RC00055,RC00523 ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029 - - - Arg_tRNA_synt_N,DALR_1,tRNA-synt_1d SRR25158195_k127_52783_3 391008.Smal_0279 3.576e-144 461.0 COG3087@1|root,COG3087@2|Bacteria,1MYFG@1224|Proteobacteria,1SD3J@1236|Gammaproteobacteria,1X471@135614|Xanthomonadales 135614|Xanthomonadales D Cell division protein - - - - - - - - - - - - SPOR SRR25158195_k127_52783_2 522373.Smlt0396 1.549e-152 486.0 COG4221@1|root,COG4221@2|Bacteria,1MUF8@1224|Proteobacteria,1RMKM@1236|Gammaproteobacteria,1X40Q@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the short-chain dehydrogenases reductases (SDR) family - - 1.1.1.276,1.1.1.381 ko:K05886,ko:K16066 ko00240,ko00260,ko01100,map00240,map00260,map01100 - R09289,R10851,R10852 RC00087,RC00525,RC03288 ko00000,ko00001,ko01000 - - - adh_short SRR25158195_k127_52783_7 1429851.X548_20715 2.963e-77 261.0 2A4K9@1|root,30T6Y@2|Bacteria,1PCVM@1224|Proteobacteria,1SY0H@1236|Gammaproteobacteria,1X7P9@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_52783_8 391008.Smal_0277 8.42e-74 261.0 COG4807@1|root,COG4807@2|Bacteria,1RD33@1224|Proteobacteria,1S2XV@1236|Gammaproteobacteria,1X70P@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1456) - - - - - - - - - - - - DUF1456 SRR25158195_k127_530308_0 522373.Smlt1368 2.361e-284 876.0 COG0457@1|root,COG4235@1|root,COG0457@2|Bacteria,COG4235@2|Bacteria,1NEXV@1224|Proteobacteria,1RN6X@1236|Gammaproteobacteria,1X9RM@135614|Xanthomonadales 135614|Xanthomonadales O cytochrome complex assembly - - - - - - - - - - - - TPR_19 SRR25158195_k127_530308_1 522373.Smlt1367 1.567e-253 783.0 COG0326@1|root,COG0326@2|Bacteria,1R7M2@1224|Proteobacteria,1RYD8@1236|Gammaproteobacteria,1X9XS@135614|Xanthomonadales 135614|Xanthomonadales O Hsp90 protein hsp90xc - - ko:K04079 ko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418 - - - ko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147 - - - HATPase_c_3,HSP90 SRR25158195_k127_533165_3 1223521.BBJX01000021_gene3013 3.385e-20 94.0 COG2199@1|root,COG2202@1|root,COG4191@1|root,COG2202@2|Bacteria,COG3706@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2VPWH@28216|Betaproteobacteria,4ACQ9@80864|Comamonadaceae 28216|Betaproteobacteria T diguanylate cyclase - - - - - - - - - - - - GGDEF,PAS_3,PAS_8 SRR25158195_k127_533165_2 391008.Smal_3220 2.09e-129 414.0 COG3047@1|root,COG3047@2|Bacteria,1NUZJ@1224|Proteobacteria,1RRRC@1236|Gammaproteobacteria,1X5TV@135614|Xanthomonadales 135614|Xanthomonadales M Outer membrane protein W ompW2 - - ko:K07275 - - - - ko00000 - - - OmpW SRR25158195_k127_533165_1 1118235.CAJH01000022_gene1434 6.384e-214 664.0 COG0057@1|root,COG0057@2|Bacteria,1MU93@1224|Proteobacteria,1RMBM@1236|Gammaproteobacteria,1X34S@135614|Xanthomonadales 135614|Xanthomonadales G Belongs to the glyceraldehyde-3-phosphate dehydrogenase family gapA - 1.2.1.12 ko:K00134 ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010 M00001,M00002,M00003,M00165,M00166,M00308,M00552 R01061 RC00149 ko00000,ko00001,ko00002,ko01000,ko04131,ko04147 - - - Gp_dh_C,Gp_dh_N SRR25158195_k127_533165_0 391008.Smal_3218 0.0 1043.0 COG5373@1|root,COG5373@2|Bacteria,1N08V@1224|Proteobacteria,1RNGS@1236|Gammaproteobacteria,1X47E@135614|Xanthomonadales 135614|Xanthomonadales S Predicted membrane protein (DUF2339) - - - - - - - - - - - - DUF2339 SRR25158195_k127_535146_3 522373.Smlt3283 1.153e-159 508.0 COG1294@1|root,COG1294@2|Bacteria,1MURP@1224|Proteobacteria,1RP7F@1236|Gammaproteobacteria,1X477@135614|Xanthomonadales 135614|Xanthomonadales C oxidase, subunit cydB - 1.10.3.14 ko:K00426 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00153 R11325 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - Cyt_bd_oxida_II SRR25158195_k127_535146_0 522373.Smlt3282 0.0 1049.0 COG1271@1|root,COG1271@2|Bacteria,1MV60@1224|Proteobacteria,1RN2U@1236|Gammaproteobacteria,1X4FJ@135614|Xanthomonadales 135614|Xanthomonadales C oxidase, subunit cydA - 1.10.3.14 ko:K00425 ko00190,ko01100,ko02020,map00190,map01100,map02020 M00153 R11325 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.4.3 - - Cyt_bd_oxida_I SRR25158195_k127_535146_1 522373.Smlt3280 0.0 1010.0 COG4988@1|root,COG4988@2|Bacteria,1QU1N@1224|Proteobacteria,1RNPI@1236|Gammaproteobacteria,1X3G0@135614|Xanthomonadales 135614|Xanthomonadales V abc transporter atp-binding protein cydD - - ko:K16013 ko02010,map02010 - - - ko00000,ko00001,ko02000 3.A.1.129 - - ABC_membrane,ABC_tran SRR25158195_k127_535146_2 522373.Smlt3279 8.318e-200 627.0 COG4987@1|root,COG4987@2|Bacteria,1QU1P@1224|Proteobacteria,1RQD7@1236|Gammaproteobacteria,1X4Y1@135614|Xanthomonadales 135614|Xanthomonadales V ABC transporter cydC - - ko:K16012 ko02010,map02010 - - - ko00000,ko00001,ko02000 3.A.1.129 - - ABC_membrane,ABC_tran SRR25158195_k127_539741_0 383407.XOC_1337 9.974e-242 764.0 COG3501@1|root,COG4253@1|root,COG3501@2|Bacteria,COG4253@2|Bacteria,1MU7Q@1224|Proteobacteria,1RN6G@1236|Gammaproteobacteria,1X9AN@135614|Xanthomonadales 135614|Xanthomonadales S Putative type VI secretion system Rhs element Vgr - - - - - - - - - - - - DUF2345,Phage_GPD,T6SS_Vgr SRR25158195_k127_539741_1 1385517.N800_05980 8.397e-58 205.0 COG1388@1|root,COG1388@2|Bacteria,1N3BC@1224|Proteobacteria,1SB0C@1236|Gammaproteobacteria 1236|Gammaproteobacteria M LysM domain - - - - - - - - - - - - LysM SRR25158195_k127_541370_1 522373.Smlt1687 2.784e-116 375.0 COG0348@1|root,COG0348@2|Bacteria,1MVFY@1224|Proteobacteria,1RMDI@1236|Gammaproteobacteria,1X4FV@135614|Xanthomonadales 135614|Xanthomonadales C IG-like fold at C-terminal of FixG, putative oxidoreductase - - - - - - - - - - - - Fer4_18,Fer4_5,FixG_C SRR25158195_k127_541370_4 522373.Smlt1684 2.69e-74 251.0 COG1396@1|root,COG1396@2|Bacteria,1QGZB@1224|Proteobacteria,1TEG5@1236|Gammaproteobacteria,1XBMJ@135614|Xanthomonadales 135614|Xanthomonadales K sequence-specific DNA binding - - - - - - - - - - - - - SRR25158195_k127_541370_5 391008.Smal_1422 7.087e-69 237.0 COG0239@1|root,COG0239@2|Bacteria,1MZNH@1224|Proteobacteria,1SWYN@1236|Gammaproteobacteria,1X8Q4@135614|Xanthomonadales 135614|Xanthomonadales D Important for reducing fluoride concentration in the cell, thus reducing its toxicity crcB - - ko:K06199 - - - - ko00000,ko02000 1.A.43.1,1.A.43.2,1.A.43.3 - - CRCB SRR25158195_k127_541370_0 391008.Smal_1421 2.825e-166 526.0 COG4977@1|root,COG4977@2|Bacteria,1QV1S@1224|Proteobacteria,1RS06@1236|Gammaproteobacteria,1X4CQ@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - Cupin_6,HTH_18,HTH_AraC SRR25158195_k127_541370_3 522373.Smlt1681 6.232e-76 268.0 2BI4Y@1|root,32CA5@2|Bacteria,1PVU0@1224|Proteobacteria,1SDI1@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_541370_2 391008.Smal_1419 3.761e-85 298.0 COG1073@1|root,COG1073@2|Bacteria,1NATS@1224|Proteobacteria,1T49S@1236|Gammaproteobacteria,1X6DU@135614|Xanthomonadales 135614|Xanthomonadales S alpha beta - - - - - - - - - - - - - SRR25158195_k127_541874_3 1429851.X548_03340 1.876e-46 173.0 COG1080@1|root,COG1080@2|Bacteria,1MUT8@1224|Proteobacteria,1RN6R@1236|Gammaproteobacteria,1X33X@135614|Xanthomonadales 135614|Xanthomonadales G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) ptsI - 2.7.3.9 ko:K08483 ko02060,map02060 - - - ko00000,ko00001,ko01000,ko02000 8.A.7 - - PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C SRR25158195_k127_541874_4 1123487.KB892857_gene2390 2.326e-19 90.0 COG1925@1|root,COG1925@2|Bacteria,1N6RM@1224|Proteobacteria,2VU8W@28216|Betaproteobacteria,2KWVF@206389|Rhodocyclales 206389|Rhodocyclales G Phosphotransferase System ptsH - - ko:K11189 - - - - ko00000,ko02000 4.A.2.1 - - PTS-HPr SRR25158195_k127_541874_2 522373.Smlt1106 4.105e-74 250.0 COG2893@1|root,COG2893@2|Bacteria,1NEI7@1224|Proteobacteria,1T14J@1236|Gammaproteobacteria,1X6E2@135614|Xanthomonadales 135614|Xanthomonadales G PTS system fructose IIA component family protein - - 2.7.1.194 ko:K02821 ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060 M00283,M00550 R07671 RC00017,RC03206 ko00000,ko00001,ko00002,ko01000,ko02000 4.A.7.1 - - EIIA-man SRR25158195_k127_541874_1 391008.Smal_0950 3.647e-178 559.0 COG1660@1|root,COG1660@2|Bacteria,1MVX6@1224|Proteobacteria,1RNJX@1236|Gammaproteobacteria,1X3TG@135614|Xanthomonadales 135614|Xanthomonadales S Displays ATPase and GTPase activities - - - ko:K06958 - - - - ko00000,ko03019 - - - ATP_bind_2 SRR25158195_k127_541874_0 1429851.X548_03360 1.449e-186 583.0 COG1493@1|root,COG1493@2|Bacteria,1NNN5@1224|Proteobacteria,1S2K0@1236|Gammaproteobacteria,1X321@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) hprK GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - ko:K06023 - - - - ko00000,ko01000 - - - Hpr_kinase_C,Hpr_kinase_N SRR25158195_k127_544100_0 1429851.X548_20120 5.619e-234 739.0 COG0457@1|root,COG2114@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,1P8ZU@1224|Proteobacteria,1S6BW@1236|Gammaproteobacteria,1X4FC@135614|Xanthomonadales 135614|Xanthomonadales T Pfam Adenylate and Guanylate cyclase catalytic domain - - - - - - - - - - - - Guanylate_cyc,TPR_19 SRR25158195_k127_544100_1 1429851.X548_20135 2.385e-133 430.0 COG0778@1|root,COG0778@2|Bacteria,1PUI1@1224|Proteobacteria,1SH4S@1236|Gammaproteobacteria,1X5MA@135614|Xanthomonadales 135614|Xanthomonadales C Nitroreductase family - - - - - - - - - - - - Nitroreductase SRR25158195_k127_545785_7 522373.Smlt0658 2.794e-60 210.0 COG3145@1|root,COG3145@2|Bacteria,1RGXU@1224|Proteobacteria,1S6DD@1236|Gammaproteobacteria,1X6N0@135614|Xanthomonadales 135614|Xanthomonadales L alkylated DNA - - - - - - - - - - - - 2OG-FeII_Oxy_2 SRR25158195_k127_545785_4 1429851.X548_01110 7.678e-127 411.0 COG2057@1|root,COG2057@2|Bacteria,1RA4V@1224|Proteobacteria,1RP21@1236|Gammaproteobacteria,1X45N@135614|Xanthomonadales 135614|Xanthomonadales I transferase lpsJ - 2.8.3.5 ko:K01029 ko00072,ko00280,ko00650,map00072,map00280,map00650 - R00410 RC00014 ko00000,ko00001,ko01000 - - - CoA_trans SRR25158195_k127_545785_3 522373.Smlt0655 1.007e-142 454.0 COG1788@1|root,COG1788@2|Bacteria,1MVEI@1224|Proteobacteria,1RNXB@1236|Gammaproteobacteria,1X3W4@135614|Xanthomonadales 135614|Xanthomonadales I transferase lpsI - 2.8.3.5 ko:K01028 ko00072,ko00280,ko00650,map00072,map00280,map00650 - R00410 RC00014 ko00000,ko00001,ko01000 - - - CoA_trans SRR25158195_k127_545785_2 522373.Smlt0650 3.415e-160 516.0 COG1091@1|root,COG1091@2|Bacteria,1MUXM@1224|Proteobacteria,1RSNR@1236|Gammaproteobacteria,1X3YC@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose rmlD - 1.1.1.133 ko:K00067 ko00521,ko00523,ko01130,map00521,map00523,map01130 M00793 R02777 RC00182 ko00000,ko00001,ko00002,ko01000 - - - RmlD_sub_bind SRR25158195_k127_545785_5 1118235.CAJH01000004_gene190 8.839e-105 347.0 COG1898@1|root,COG1898@2|Bacteria,1R9YD@1224|Proteobacteria,1S245@1236|Gammaproteobacteria,1X327@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose rmlC - 5.1.3.13 ko:K01790 ko00521,ko00523,ko01130,map00521,map00523,map01130 M00793 R06514 RC01531 ko00000,ko00001,ko00002,ko01000 - - - dTDP_sugar_isom SRR25158195_k127_545785_1 1429851.X548_01055 2.584e-186 586.0 COG1209@1|root,COG1209@2|Bacteria,1MU0X@1224|Proteobacteria,1RMTR@1236|Gammaproteobacteria,1X399@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis rmlA - 2.7.7.24 ko:K00973 ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130 M00793 R02328 RC00002 ko00000,ko00001,ko00002,ko01000 - - - NTP_transferase SRR25158195_k127_545785_0 522373.Smlt0647 2.206e-224 696.0 COG1088@1|root,COG1088@2|Bacteria,1MU5E@1224|Proteobacteria,1RP7G@1236|Gammaproteobacteria,1X3KP@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily rmlB GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008460,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016829,GO:0016835,GO:0016836,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0045226,GO:0046379,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 4.2.1.46 ko:K01710 ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130 M00793 R06513 RC00402 ko00000,ko00001,ko00002,ko01000 - - - GDP_Man_Dehyd SRR25158195_k127_545785_6 1122604.JONR01000002_gene1645 1.435e-91 307.0 COG2086@1|root,COG2086@2|Bacteria,1MVH6@1224|Proteobacteria,1RN6F@1236|Gammaproteobacteria,1X34D@135614|Xanthomonadales 135614|Xanthomonadales C electron transfer flavoprotein beta subunit etfB - - ko:K03521 - - - - ko00000 - - - ETF SRR25158195_k127_545785_8 1429851.X548_01040 1.702e-51 185.0 COG2025@1|root,COG2025@2|Bacteria,1MUFI@1224|Proteobacteria,1RMK7@1236|Gammaproteobacteria,1X4RW@135614|Xanthomonadales 135614|Xanthomonadales C Electron transfer flavoprotein etfA - - ko:K03522 - - - - ko00000,ko04147 - - - ETF,ETF_alpha SRR25158195_k127_549757_6 522373.Smlt2336 1.619e-45 165.0 COG3570@1|root,COG3570@2|Bacteria,1MW4R@1224|Proteobacteria,1SFMV@1236|Gammaproteobacteria,1X8FJ@135614|Xanthomonadales 135614|Xanthomonadales V Aminoglycoside/hydroxyurea antibiotic resistance kinase - - 2.7.1.72 ko:K04343 - M00766 R02225 RC00002,RC00078 br01600,ko00000,ko00002,ko01000,ko01504 - - - APH_6_hur SRR25158195_k127_549757_1 1122185.N792_07765 0.0 1310.0 COG0542@1|root,COG0542@2|Bacteria,1MV8B@1224|Proteobacteria,1RMH3@1236|Gammaproteobacteria,1X3NX@135614|Xanthomonadales 135614|Xanthomonadales O ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease clpA - - ko:K03694 - - - - ko00000,ko03110 - - - AAA,AAA_2,ClpB_D2-small,Clp_N SRR25158195_k127_549757_8 1429851.X548_08490 7.647e-27 115.0 2AHJI@1|root,317X8@2|Bacteria,1QEP5@1224|Proteobacteria,1TBGP@1236|Gammaproteobacteria,1X939@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_549757_7 383407.XOC_2406 6.132e-42 154.0 COG0361@1|root,COG0361@2|Bacteria,1MZFU@1224|Proteobacteria,1S8WZ@1236|Gammaproteobacteria,1X7HF@135614|Xanthomonadales 135614|Xanthomonadales J One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex infA GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - ko:K02518 - - - - ko00000,ko03012 - - - eIF-1a SRR25158195_k127_549757_5 522373.Smlt2340 2.217e-146 469.0 COG2360@1|root,COG2360@2|Bacteria,1R9W8@1224|Proteobacteria,1S1ZB@1236|Gammaproteobacteria,1X4A3@135614|Xanthomonadales 135614|Xanthomonadales O Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine aat GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008914,GO:0016740,GO:0016746,GO:0016755,GO:0044424,GO:0044464,GO:0140096 2.3.2.6 ko:K00684 - - R03813,R11443,R11444 RC00055,RC00064 ko00000,ko01000 - - - Leu_Phe_trans SRR25158195_k127_549757_2 522373.Smlt2342 8.388e-234 725.0 COG3146@1|root,COG3146@2|Bacteria,1MU35@1224|Proteobacteria,1RNWI@1236|Gammaproteobacteria,1X3ZF@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - ko:K09919 - - - - ko00000 - - - FemAB_like SRR25158195_k127_549757_3 522373.Smlt2343 1.304e-208 650.0 COG0492@1|root,COG0492@2|Bacteria,1MV15@1224|Proteobacteria,1RMEX@1236|Gammaproteobacteria,1X3Y1@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family trxB - 1.8.1.9 ko:K00384 ko00450,map00450 - R02016,R03596,R09372 RC00013,RC02518,RC02873 ko00000,ko00001,ko01000 - - - Pyr_redox_2 SRR25158195_k127_549757_0 522373.Smlt2344 0.0 1479.0 COG1674@1|root,COG1674@2|Bacteria,1MVPI@1224|Proteobacteria,1RM9A@1236|Gammaproteobacteria,1X4F7@135614|Xanthomonadales 135614|Xanthomonadales D Cell division protein ftsk ftsK - - ko:K03466 - - - - ko00000,ko03036 3.A.12 - - Cupin_4,FtsK_4TM,FtsK_SpoIIIE,Ftsk_gamma SRR25158195_k127_549757_4 391008.Smal_1934 4.786e-183 578.0 COG1305@1|root,COG1305@2|Bacteria,1R5BE@1224|Proteobacteria,1S56P@1236|Gammaproteobacteria,1XC62@135614|Xanthomonadales 135614|Xanthomonadales E Domain of Unknown Function with PDB structure (DUF3857) - - - - - - - - - - - - DUF3857,Transglut_core SRR25158195_k127_5585_1 1429851.X548_00655 1.63e-63 221.0 COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,1RNNA@1236|Gammaproteobacteria,1X4B6@135614|Xanthomonadales 135614|Xanthomonadales O peptidase - - - ko:K07386 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M13,Peptidase_M13_N SRR25158195_k127_5585_0 522373.Smlt0551 0.0 1703.0 COG2199@1|root,COG2200@1|root,COG2202@1|root,COG2199@2|Bacteria,COG2200@2|Bacteria,COG2202@2|Bacteria,1NWNJ@1224|Proteobacteria,1T2J6@1236|Gammaproteobacteria,1X540@135614|Xanthomonadales 135614|Xanthomonadales T Putative diguanylate phosphodiesterase - - - - - - - - - - - - EAL,GGDEF,PAS,PAS_3,PAS_8 SRR25158195_k127_559678_1 1429851.X548_04035 1.038e-184 584.0 COG4773@1|root,COG4773@2|Bacteria,1MW5E@1224|Proteobacteria,1RMBD@1236|Gammaproteobacteria,1X9DR@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - ko:K16088 - - - - ko00000,ko02000 1.B.14.1.10,1.B.14.1.3,1.B.14.1.8 - - Plug,TonB_dep_Rec SRR25158195_k127_559678_0 1429851.X548_04040 0.0 1095.0 COG0579@1|root,COG0579@2|Bacteria,1MUCC@1224|Proteobacteria,1RRBV@1236|Gammaproteobacteria,1X4VP@135614|Xanthomonadales 135614|Xanthomonadales C malate quinone oxidoreductase mqo - 1.1.5.4 ko:K00116 ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map01100,map01110,map01120,map01130,map01200 M00009,M00011 R00360,R00361,R01257 RC00031 ko00000,ko00001,ko00002,ko01000 - - - Mqo SRR25158195_k127_559678_3 383407.XOC_0096 2.663e-21 106.0 COG4104@1|root,COG4104@2|Bacteria,1N6T7@1224|Proteobacteria,1SDI3@1236|Gammaproteobacteria 1236|Gammaproteobacteria S PAAR motif - - - - - - - - - - - - PAAR_motif SRR25158195_k127_559678_2 1349767.GJA_2565 1.872e-50 194.0 COG4253@1|root,COG4253@2|Bacteria,1P3FT@1224|Proteobacteria,2WHE5@28216|Betaproteobacteria,4796M@75682|Oxalobacteraceae 28216|Betaproteobacteria S Uncharacterized protein conserved in bacteria (DUF2345) - - - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - DUF2345,PAAR_motif,T6SS_Vgr SRR25158195_k127_56605_0 391008.Smal_2367 0.0 1343.0 COG2936@1|root,COG2936@2|Bacteria,1MVA8@1224|Proteobacteria,1S1KH@1236|Gammaproteobacteria,1X3PX@135614|Xanthomonadales 135614|Xanthomonadales S Glutaryl-7-ACA acylase gaa - - ko:K06978 - - - - ko00000 - - - PepX_C,Peptidase_S15 SRR25158195_k127_56605_2 1118235.CAJH01000039_gene2545 7.843e-185 586.0 COG1902@1|root,COG1902@2|Bacteria,1MVIX@1224|Proteobacteria,1RMFI@1236|Gammaproteobacteria,1X3K9@135614|Xanthomonadales 135614|Xanthomonadales C NADH flavin oxidoreductase NADH oxidase nerA - - ko:K10680 ko00633,ko01120,map00633,map01120 - R08014,R08017,R08042 RC00250 ko00000,ko00001,ko01000 - - - Oxidored_FMN SRR25158195_k127_56605_3 391008.Smal_2364 1.122e-135 438.0 COG1028@1|root,COG1028@2|Bacteria,1R413@1224|Proteobacteria,1S3TR@1236|Gammaproteobacteria,1X6MC@135614|Xanthomonadales 135614|Xanthomonadales IQ KR domain - - - - - - - - - - - - adh_short_C2 SRR25158195_k127_56605_4 391008.Smal_2363 2.152e-77 265.0 COG1285@1|root,COG1285@2|Bacteria,1MURJ@1224|Proteobacteria,1RQUD@1236|Gammaproteobacteria,1X7P8@135614|Xanthomonadales 135614|Xanthomonadales S MgtC family - - - ko:K07507 - - - - ko00000,ko02000 9.B.20 - - MgtC SRR25158195_k127_56605_1 522373.Smlt2910 2.181e-284 877.0 COG1620@1|root,COG1620@2|Bacteria,1MV13@1224|Proteobacteria,1RPNW@1236|Gammaproteobacteria,1X5B3@135614|Xanthomonadales 135614|Xanthomonadales C L-lactate permease lctP - - ko:K00427,ko:K03303 - - - - ko00000,ko02000 2.A.14,2.A.14.1.1 - - Lactate_perm SRR25158195_k127_573915_2 522373.Smlt2248 5.324e-57 206.0 COG2201@1|root,COG2201@2|Bacteria,1MWCN@1224|Proteobacteria,1RN67@1236|Gammaproteobacteria,1X3IE@135614|Xanthomonadales 135614|Xanthomonadales NT catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR cheB - 3.1.1.61,3.5.1.44 ko:K03412 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko02022,ko02035 - - - CheB_methylest,Response_reg SRR25158195_k127_573915_1 522373.Smlt2249 9.546e-124 398.0 COG1871@1|root,COG1871@2|Bacteria,1RDDB@1224|Proteobacteria,1S41X@1236|Gammaproteobacteria,1X4KG@135614|Xanthomonadales 135614|Xanthomonadales NT Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis cheD - 3.5.1.44 ko:K03411 ko02030,map02030 - - - ko00000,ko00001,ko01000,ko02035 - - - CheD SRR25158195_k127_573915_0 391008.Smal_1845 2.161e-182 573.0 COG1352@1|root,COG1352@2|Bacteria,1MU6W@1224|Proteobacteria,1RMFK@1236|Gammaproteobacteria,1X5DZ@135614|Xanthomonadales 135614|Xanthomonadales NT Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP cheR2 - 2.1.1.80 ko:K00575 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko01000,ko02035 - - - CheR,CheR_N SRR25158195_k127_573915_3 391008.Smal_1846 3.824e-33 130.0 COG0840@1|root,COG4564@1|root,COG0840@2|Bacteria,COG4564@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X3KX@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - ko:K03406,ko:K05874 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - HAMP,MCPsignal,sCache_2 SRR25158195_k127_580999_2 1385515.N791_02355 7.747e-212 672.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RS1Q@1236|Gammaproteobacteria,1X39R@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_580999_5 522373.Smlt3447 2.283e-05 49.0 COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,1RNNA@1236|Gammaproteobacteria,1X4B6@135614|Xanthomonadales 135614|Xanthomonadales O peptidase - - - ko:K07386 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M13,Peptidase_M13_N SRR25158195_k127_580999_0 522373.Smlt3447 0.0 1380.0 COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,1RNNA@1236|Gammaproteobacteria,1X4B6@135614|Xanthomonadales 135614|Xanthomonadales O peptidase - - - ko:K07386 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M13,Peptidase_M13_N SRR25158195_k127_580999_1 391008.Smal_2875 0.0 1292.0 COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,1RNNA@1236|Gammaproteobacteria,1X4EQ@135614|Xanthomonadales 135614|Xanthomonadales O Peptidase, M13 - - - ko:K07386 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M13,Peptidase_M13_N SRR25158195_k127_580999_4 391008.Smal_2877 8.074e-100 326.0 COG3865@1|root,COG3865@2|Bacteria,1N7IY@1224|Proteobacteria,1S25M@1236|Gammaproteobacteria,1X5ZR@135614|Xanthomonadales 135614|Xanthomonadales S 3-demethylubiquinone-9 3-methyltransferase - - 2.1.1.222,2.1.1.64 ko:K00568 ko00130,ko01100,ko01110,map00130,map01100,map01110 M00117 R04988,R05614,R08769,R08781 RC00003,RC00392,RC01895 ko00000,ko00001,ko00002,ko01000 - - - 3-dmu-9_3-mt SRR25158195_k127_580999_3 391008.Smal_2878 6.561e-196 619.0 COG1233@1|root,COG1233@2|Bacteria,1MV2R@1224|Proteobacteria,1RSGI@1236|Gammaproteobacteria,1X5MS@135614|Xanthomonadales 135614|Xanthomonadales Q Oxidoreductase - - - - - - - - - - - - Amino_oxidase SRR25158195_k127_592820_6 1429851.X548_13365 2.581e-25 106.0 COG1734@1|root,COG1734@2|Bacteria,1MZIB@1224|Proteobacteria,1S8SP@1236|Gammaproteobacteria,1X7H8@135614|Xanthomonadales 135614|Xanthomonadales T TIGRFAM phage conjugal plasmid C-4 type zinc finger protein, TraR family - - - - - - - - - - - - zf-dskA_traR SRR25158195_k127_592820_4 522373.Smlt3518 1.259e-96 319.0 COG3122@1|root,COG3122@2|Bacteria,1N15V@1224|Proteobacteria,1S5V0@1236|Gammaproteobacteria,1X6FQ@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - ko:K09912 - - - - ko00000 - - - DUF2058 SRR25158195_k127_592820_3 522373.Smlt3519 9.664e-101 330.0 COG1451@1|root,COG1451@2|Bacteria,1RDJ9@1224|Proteobacteria,1S45M@1236|Gammaproteobacteria,1X6EV@135614|Xanthomonadales 135614|Xanthomonadales S Metal-dependent hydrolase - - - ko:K07043 - - - - ko00000 - - - DUF45 SRR25158195_k127_592820_2 522373.Smlt3520 6.686e-129 414.0 COG1187@1|root,COG1187@2|Bacteria,1REW2@1224|Proteobacteria,1S6WY@1236|Gammaproteobacteria,1X34K@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the pseudouridine synthase RsuA family rsuA1 - 5.4.99.21 ko:K06182 - - - - ko00000,ko01000,ko03009 - - - S4 SRR25158195_k127_592820_0 522373.Smlt3521 3.003e-313 962.0 COG1502@1|root,COG1502@2|Bacteria,1MUDJ@1224|Proteobacteria,1RMIF@1236|Gammaproteobacteria,1X4QW@135614|Xanthomonadales 135614|Xanthomonadales I Cardiolipin synthase - - - ko:K06132 ko00564,ko01100,map00564,map01100 - R11062 RC00017 ko00000,ko00001,ko01000 - - - PLDc_2 SRR25158195_k127_592820_1 391008.Smal_2952 1.061e-182 579.0 COG1639@1|root,COG1639@2|Bacteria,1N8I3@1224|Proteobacteria,1SCBY@1236|Gammaproteobacteria,1XCBF@135614|Xanthomonadales 135614|Xanthomonadales T HDOD domain - - - - - - - - - - - - HDOD SRR25158195_k127_592820_5 1118235.CAJH01000017_gene964 9.705e-52 185.0 COG0334@1|root,COG0334@2|Bacteria,1MUXS@1224|Proteobacteria,1RQ0T@1236|Gammaproteobacteria,1X3BT@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the Glu Leu Phe Val dehydrogenases family leu - 1.4.1.9 ko:K00263 ko00280,ko00290,ko01100,ko01110,ko01130,map00280,map00290,map01100,map01110,map01130 - R01088,R01434,R02196 RC00006,RC00036 ko00000,ko00001,ko01000 - - - ELFV_dehydrog,ELFV_dehydrog_N SRR25158195_k127_601719_0 391008.Smal_1800 1.351e-182 573.0 COG0119@1|root,COG0119@2|Bacteria,1MUMX@1224|Proteobacteria,1RMUX@1236|Gammaproteobacteria,1X3WV@135614|Xanthomonadales 135614|Xanthomonadales E Hydroxymethylglutaryl-CoA lyase mvaB - 4.1.3.4 ko:K01640 ko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146 M00036,M00088 R01360,R08090 RC00502,RC00503,RC01118,RC01946 ko00000,ko00001,ko00002,ko01000 - - - HMGL-like SRR25158195_k127_601719_1 522373.Smlt2206 5.063e-153 485.0 COG1028@1|root,COG1028@2|Bacteria,1MUBQ@1224|Proteobacteria,1RQJT@1236|Gammaproteobacteria,1X30J@135614|Xanthomonadales 135614|Xanthomonadales IQ Belongs to the short-chain dehydrogenases reductases (SDR) family - - - - - - - - - - - - adh_short,adh_short_C2 SRR25158195_k127_601719_2 522373.Smlt2205 9.666e-118 379.0 COG0231@1|root,COG0231@2|Bacteria,1NWY9@1224|Proteobacteria,1RQ0N@1236|Gammaproteobacteria,1X3B8@135614|Xanthomonadales 135614|Xanthomonadales J Elongation factor P yeiP GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - ko:K02356 - - - - ko00000,ko03012 - - - EFP,EFP_N,Elong-fact-P_C SRR25158195_k127_601890_3 522373.Smlt1466 4.629e-106 344.0 COG4637@1|root,COG4637@2|Bacteria,1ND40@1224|Proteobacteria,1RPX7@1236|Gammaproteobacteria,1X5IE@135614|Xanthomonadales 135614|Xanthomonadales S AAA domain, putative AbiEii toxin, Type IV TA system - - - - - - - - - - - - AAA_21 SRR25158195_k127_601890_0 391008.Smal_1231 2.147e-193 605.0 COG0697@1|root,COG0697@2|Bacteria,1N469@1224|Proteobacteria,1RQ1G@1236|Gammaproteobacteria,1XCX6@135614|Xanthomonadales 135614|Xanthomonadales EG EamA-like transporter family - - - - - - - - - - - - EamA SRR25158195_k127_601890_1 391008.Smal_1232 1.293e-146 469.0 COG1801@1|root,COG1801@2|Bacteria,1MU7F@1224|Proteobacteria,1RYRW@1236|Gammaproteobacteria,1X4IY@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 SRR25158195_k127_601890_4 1429851.X548_04895 1.15e-80 270.0 COG2764@1|root,COG2764@2|Bacteria,1RM10@1224|Proteobacteria,1SYKJ@1236|Gammaproteobacteria,1X6WT@135614|Xanthomonadales 135614|Xanthomonadales S Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - - - - - - - - - - Glyoxalase SRR25158195_k127_601890_2 391008.Smal_1234 3.87e-144 460.0 COG1680@1|root,COG1680@2|Bacteria,1MVZN@1224|Proteobacteria,1RP0R@1236|Gammaproteobacteria,1X55T@135614|Xanthomonadales 135614|Xanthomonadales V Beta-lactamase ampC2 - - - - - - - - - - - Beta-lactamase,DUF3471 SRR25158195_k127_606821_1 1429851.X548_09800 1.294e-167 528.0 COG1450@1|root,COG4796@1|root,COG1450@2|Bacteria,COG4796@2|Bacteria,1MUUA@1224|Proteobacteria,1RPJS@1236|Gammaproteobacteria,1X4RY@135614|Xanthomonadales 135614|Xanthomonadales NU secretion system protein xcsD - - ko:K02453 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - Secretin,Secretin_N SRR25158195_k127_606821_0 1429851.X548_09795 4.439e-234 734.0 COG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,1RMBS@1236|Gammaproteobacteria,1X36S@135614|Xanthomonadales 135614|Xanthomonadales NU General secretion pathway protein xcsE - - ko:K02454 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - T2SSE,T2SSE_N SRR25158195_k127_609235_1 1100720.ALKN01000026_gene1697 2.542e-97 320.0 COG0318@1|root,COG0318@2|Bacteria,1MUMC@1224|Proteobacteria,2VGZE@28216|Betaproteobacteria,4AGKN@80864|Comamonadaceae 28216|Betaproteobacteria IQ AMP-binding enzyme C-terminal domain - - - ko:K00666 - - - - ko00000,ko01000,ko01004 - - - AMP-binding,AMP-binding_C SRR25158195_k127_609235_0 887062.HGR_12127 6.843e-215 670.0 COG0773@1|root,COG0773@2|Bacteria,1MUC5@1224|Proteobacteria,2VIX5@28216|Betaproteobacteria,4A9UY@80864|Comamonadaceae 28216|Betaproteobacteria M Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate mpl - 6.3.2.45 ko:K02558 - - - - ko00000,ko01000 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M SRR25158195_k127_623765_0 522373.Smlt1644 1.104e-147 468.0 COG0526@1|root,COG3386@1|root,COG0526@2|Bacteria,COG3386@2|Bacteria,1QTY9@1224|Proteobacteria,1S0UZ@1236|Gammaproteobacteria,1X3M8@135614|Xanthomonadales 135614|Xanthomonadales CO Nhl repeat - - - - - - - - - - - - AhpC-TSA,NHL,Redoxin SRR25158195_k127_623765_1 522373.Smlt1645 4.899e-94 309.0 COG0322@1|root,COG0322@2|Bacteria,1MV38@1224|Proteobacteria,1RNGV@1236|Gammaproteobacteria,1X3C0@135614|Xanthomonadales 135614|Xanthomonadales L The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision uvrC GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - ko:K03703 ko03420,map03420 - - - ko00000,ko00001,ko03400 - - - GIY-YIG,HHH_5,UVR,UvrC_HhH_N SRR25158195_k127_624310_1 1122951.ATUE01000006_gene991 4.612e-58 213.0 28HF6@1|root,2Z7RB@2|Bacteria,1P254@1224|Proteobacteria,1S4WK@1236|Gammaproteobacteria,3NKYP@468|Moraxellaceae 1236|Gammaproteobacteria S Alginate export - - - - - - - - - - - - Alginate_exp SRR25158195_k127_624310_0 391008.Smal_2334 0.0 1205.0 COG1574@1|root,COG1574@2|Bacteria,1MWP2@1224|Proteobacteria,1RNB7@1236|Gammaproteobacteria,1X2ZS@135614|Xanthomonadales 135614|Xanthomonadales S Amidohydrolase family - - - - - - - - - - - - Amidohydro_3 SRR25158195_k127_626368_1 1429851.X548_14460 1.438e-149 474.0 COG0028@1|root,COG0028@2|Bacteria,1MWKP@1224|Proteobacteria,1RNYT@1236|Gammaproteobacteria,1X5FJ@135614|Xanthomonadales 135614|Xanthomonadales EH Belongs to the TPP enzyme family poxB - 1.2.5.1 ko:K00156 ko00620,map00620 - R03145 RC00860 ko00000,ko00001,ko01000 - - - TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N SRR25158195_k127_626368_2 522373.Smlt3738 2.062e-137 441.0 2E0CA@1|root,32VZA@2|Bacteria,1N2VB@1224|Proteobacteria,1SEKH@1236|Gammaproteobacteria,1XD4C@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_626368_3 391008.Smal_3151 2.174e-93 308.0 COG2913@1|root,COG2913@2|Bacteria,1RJS2@1224|Proteobacteria,1S61P@1236|Gammaproteobacteria,1X6WM@135614|Xanthomonadales 135614|Xanthomonadales J Protein of unknown function (DUF3574) - - - - - - - - - - - - DUF3574 SRR25158195_k127_626368_0 522373.Smlt3740 0.0 1178.0 COG1629@1|root,COG4771@2|Bacteria,1MUNK@1224|Proteobacteria,1RN9S@1236|Gammaproteobacteria,1X4FQ@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor - - - ko:K02014 - - - - ko00000,ko02000 1.B.14 - - Plug,TonB_dep_Rec SRR25158195_k127_632165_3 522373.Smlt0196 7.065e-122 396.0 COG0642@1|root,COG0784@1|root,COG0834@1|root,COG2198@1|root,COG0642@2|Bacteria,COG0784@2|Bacteria,COG0834@2|Bacteria,COG2198@2|Bacteria,1NC9X@1224|Proteobacteria,1SVEC@1236|Gammaproteobacteria,1X3VB@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - 2.7.13.3 ko:K07679 ko02020,ko05133,map02020,map05133 M00477 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022 - - - CHASE,HATPase_c,HisKA,Hpt,PAS_3,PAS_4,PAS_9,Response_reg,SBP_bac_3 SRR25158195_k127_632165_6 1429851.X548_19950 1.091e-64 233.0 COG3474@1|root,COG3474@2|Bacteria,1RIDN@1224|Proteobacteria,1SI75@1236|Gammaproteobacteria,1XCB5@135614|Xanthomonadales 135614|Xanthomonadales C Cytochrome c - - - ko:K08738 ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416 M00595 R10151 RC03151,RC03152 ko00000,ko00001,ko00002 3.D.4.6 - - Cytochrom_C SRR25158195_k127_632165_0 522373.Smlt0198 0.0 1148.0 COG0644@1|root,COG2440@1|root,COG0644@2|Bacteria,COG2440@2|Bacteria,1MVU6@1224|Proteobacteria,1RNY5@1236|Gammaproteobacteria,1X31X@135614|Xanthomonadales 135614|Xanthomonadales C Electron transfer flavoprotein-ubiquinone oxidoreductase - - 1.5.5.1 ko:K00311 - - - - ko00000,ko01000 - - - ETF_QO,FAD_binding_2,NAD_binding_8 SRR25158195_k127_632165_2 522373.Smlt0199 1.954e-249 771.0 COG1960@1|root,COG1960@2|Bacteria,1MUK0@1224|Proteobacteria,1RNBX@1236|Gammaproteobacteria,1X45S@135614|Xanthomonadales 135614|Xanthomonadales I Acyl-CoA dehydrogenase gcdH - 1.3.8.6 ko:K00252 ko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,map00071,map00310,map00362,map00380,map01100,map01120,map01130 M00032 R02487,R02488,R10074 RC00052,RC00156 ko00000,ko00001,ko00002,ko01000 - - - Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N SRR25158195_k127_632165_4 522373.Smlt0200 3.611e-99 325.0 COG0219@1|root,COG0219@2|Bacteria,1RCY4@1224|Proteobacteria,1S3PI@1236|Gammaproteobacteria,1X643@135614|Xanthomonadales 135614|Xanthomonadales J Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide trmL - 2.1.1.207 ko:K03216 - - - - ko00000,ko01000,ko03016 - - - SpoU_methylase SRR25158195_k127_632165_5 522373.Smlt0201 7.292e-79 265.0 2AQ70@1|root,31FCQ@2|Bacteria,1QCV6@1224|Proteobacteria,1T8NK@1236|Gammaproteobacteria,1XAZK@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_632165_1 1429851.X548_19980 0.0 1077.0 COG0612@1|root,COG0612@2|Bacteria,1MVST@1224|Proteobacteria,1RN05@1236|Gammaproteobacteria,1X39C@135614|Xanthomonadales 135614|Xanthomonadales S Peptidase M16 - - - - - - - - - - - - Peptidase_M16,Peptidase_M16_C SRR25158195_k127_632778_5 522373.Smlt3509 3.533e-23 105.0 COG0443@1|root,COG0443@2|Bacteria,1MXBT@1224|Proteobacteria,1RN4U@1236|Gammaproteobacteria,1X5C7@135614|Xanthomonadales 135614|Xanthomonadales O Heat shock protein yegD - - ko:K04046 - - - - ko00000,ko03110 1.A.33 - - HSP70 SRR25158195_k127_632778_3 522373.Smlt3508 2.552e-64 226.0 COG2824@1|root,COG2824@2|Bacteria,1RGUU@1224|Proteobacteria,1S60W@1236|Gammaproteobacteria,1X71K@135614|Xanthomonadales 135614|Xanthomonadales P Alkylphosphonate utilization operon protein PhnA phnA - - ko:K06193 ko01120,map01120 - - - ko00000 - - - PhnA,PhnA_Zn_Ribbon SRR25158195_k127_632778_0 1429851.X548_13310 1.737e-175 560.0 COG0457@1|root,COG1305@1|root,COG0457@2|Bacteria,COG1305@2|Bacteria,1MUTV@1224|Proteobacteria,1SYSA@1236|Gammaproteobacteria,1X61P@135614|Xanthomonadales 135614|Xanthomonadales E Tetratricopeptide repeat - - - - - - - - - - - - TPR_2,TPR_8,Transglut_core SRR25158195_k127_632778_1 522373.Smlt3506 2.537e-108 353.0 COG4339@1|root,COG4339@2|Bacteria,1MZ9X@1224|Proteobacteria,1S59I@1236|Gammaproteobacteria,1X6IX@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - - SRR25158195_k127_632778_4 522373.Smlt3505 8.397e-26 124.0 2DR41@1|root,33A2I@2|Bacteria,1NJGU@1224|Proteobacteria,1TD3I@1236|Gammaproteobacteria,1X8U7@135614|Xanthomonadales 135614|Xanthomonadales S Oxidoreductase-like protein, N-terminal - - - - - - - - - - - - Oxidored-like SRR25158195_k127_632778_2 1429851.X548_13295 2.286e-83 280.0 2F54Q@1|root,33XRS@2|Bacteria,1NVNV@1224|Proteobacteria,1T6V8@1236|Gammaproteobacteria,1X884@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF998) - - - - - - - - - - - - DUF998 SRR25158195_k127_632894_1 522373.Smlt3227 8.214e-90 295.0 COG0543@1|root,COG0543@2|Bacteria,1QTSK@1224|Proteobacteria,1T1MX@1236|Gammaproteobacteria,1X4EV@135614|Xanthomonadales 135614|Xanthomonadales CH ferredoxin--nadp reductase fpr - 1.18.1.2,1.19.1.1 ko:K00528 - - R10159 - ko00000,ko01000 - - - FAD_binding_6,NAD_binding_1 SRR25158195_k127_632894_2 1118235.CAJH01000008_gene502 7.116e-87 289.0 COG0386@1|root,COG0386@2|Bacteria,1RD1R@1224|Proteobacteria,1S425@1236|Gammaproteobacteria,1X610@135614|Xanthomonadales 135614|Xanthomonadales O Belongs to the glutathione peroxidase family gpo - 1.11.1.9 ko:K00432 ko00480,ko00590,ko04918,map00480,map00590,map04918 - R00274,R07034,R07035 RC00011,RC00982 ko00000,ko00001,ko01000 - - - GSHPx SRR25158195_k127_632894_0 1429851.X548_11785 6.239e-244 763.0 COG0339@1|root,COG0339@2|Bacteria,1MU1K@1224|Proteobacteria,1RMXI@1236|Gammaproteobacteria,1X3Q6@135614|Xanthomonadales 135614|Xanthomonadales E Dipeptidyl carboxypeptidase dcp - 3.4.15.5 ko:K01284 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M3 SRR25158195_k127_642048_1 762376.AXYL_05708 6.732e-32 136.0 COG3501@1|root,COG4253@1|root,COG3501@2|Bacteria,COG4253@2|Bacteria,1MU7Q@1224|Proteobacteria,2VJSR@28216|Betaproteobacteria,3T92P@506|Alcaligenaceae 28216|Betaproteobacteria S Uncharacterized protein conserved in bacteria (DUF2345) - - - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - DUF2345,Phage_GPD,T6SS_Vgr SRR25158195_k127_642048_0 762376.AXYL_05707 6.58e-49 190.0 COG1502@1|root,COG1502@2|Bacteria,1PGVE@1224|Proteobacteria,2WB7J@28216|Betaproteobacteria,3T8E3@506|Alcaligenaceae 28216|Betaproteobacteria I Phospholipase D. Active site motifs. - - 3.1.4.4 ko:K01115 ko00564,ko00565,ko01100,ko01110,ko04014,ko04024,ko04071,ko04072,ko04144,ko04666,ko04724,ko04912,ko05231,map00564,map00565,map01100,map01110,map04014,map04024,map04071,map04072,map04144,map04666,map04724,map04912,map05231 - R01310,R02051,R07385 RC00017,RC00425 ko00000,ko00001,ko01000,ko04131 - - - PLDc_2 SRR25158195_k127_652566_0 391008.Smal_0350 0.0 1024.0 COG0427@1|root,COG0427@2|Bacteria,1MUGE@1224|Proteobacteria,1RP19@1236|Gammaproteobacteria,1X39U@135614|Xanthomonadales 135614|Xanthomonadales C acetyl-CoA hydrolase - - 2.8.3.18 ko:K18118 ko00020,ko00620,ko00650,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00650,map01100,map01110,map01120,map01130,map01200 M00009,M00011 R10343 RC00012,RC00014 ko00000,ko00001,ko00002,ko01000 - - - AcetylCoA_hyd_C,AcetylCoA_hydro SRR25158195_k127_652566_1 522373.Smlt0473 1.52e-228 742.0 COG1391@1|root,COG1391@2|Bacteria,1MU4I@1224|Proteobacteria,1RP9N@1236|Gammaproteobacteria,1X38Z@135614|Xanthomonadales 135614|Xanthomonadales H Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell glnE GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090 2.7.7.42,2.7.7.89 ko:K00982 - - - - ko00000,ko01000 - - - GlnD_UR_UTase,GlnE SRR25158195_k127_666592_0 522373.Smlt4348 1.826e-318 975.0 COG1368@1|root,COG1368@2|Bacteria,1MVCM@1224|Proteobacteria,1RNJ3@1236|Gammaproteobacteria,1X35K@135614|Xanthomonadales 135614|Xanthomonadales M Transfers a phosphoglycerol residue from phosphatidylglycerol to the membrane-bound nascent glucan backbones mdoB - 2.7.8.20 ko:K01002 ko01100,map01100 - - - ko00000,ko01000 - - - Sulfatase SRR25158195_k127_672439_0 1429851.X548_04290 5.96e-170 534.0 COG3975@1|root,COG3975@2|Bacteria,1MUHZ@1224|Proteobacteria,1RZ70@1236|Gammaproteobacteria,1X4ZJ@135614|Xanthomonadales 135614|Xanthomonadales S protease with the C-terminal PDZ domain - - - - - - - - - - - - Peptidase_M61,TPR_3 SRR25158195_k127_672439_1 522373.Smlt1344 1.349e-108 358.0 COG3714@1|root,COG3714@2|Bacteria,1N6QN@1224|Proteobacteria,1TAFV@1236|Gammaproteobacteria,1X74T@135614|Xanthomonadales 135614|Xanthomonadales S YhhN family - - - - - - - - - - - - YhhN SRR25158195_k127_672439_2 1118235.CAJH01000028_gene1993 5.598e-98 323.0 COG1626@1|root,COG1626@2|Bacteria,1MWSM@1224|Proteobacteria,1RMFP@1236|Gammaproteobacteria,1X39M@135614|Xanthomonadales 135614|Xanthomonadales G Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system treA - 3.2.1.28 ko:K01194 ko00500,ko01100,map00500,map01100 - R00010 RC00049 ko00000,ko00001,ko00537,ko01000 - GH37 - Trehalase SRR25158195_k127_683827_0 522373.Smlt2959 0.0 1308.0 COG2199@1|root,COG2202@1|root,COG5000@1|root,COG2199@2|Bacteria,COG2202@2|Bacteria,COG5000@2|Bacteria,1NWNJ@1224|Proteobacteria,1T2J6@1236|Gammaproteobacteria,1XD9N@135614|Xanthomonadales 135614|Xanthomonadales T PAS fold - - - - - - - - - - - - GGDEF,PAS,PAS_3,PAS_9 SRR25158195_k127_683827_1 522373.Smlt2956 1.778e-183 580.0 2C59N@1|root,2ZA13@2|Bacteria,1R379@1224|Proteobacteria,1SNJD@1236|Gammaproteobacteria,1XDHV@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_691087_2 522373.Smlt3205 7.854e-48 172.0 COG0431@1|root,COG0431@2|Bacteria,1RAFI@1224|Proteobacteria,1S4DC@1236|Gammaproteobacteria,1XCN9@135614|Xanthomonadales 135614|Xanthomonadales S NAD(P)H-dependent FMN reductase - - - ko:K19784 - - - - ko00000 - - - FMN_red SRR25158195_k127_691087_0 391008.Smal_2639 0.0 1268.0 COG0367@1|root,COG0367@2|Bacteria,1MW4E@1224|Proteobacteria,1RQ7D@1236|Gammaproteobacteria,1X50J@135614|Xanthomonadales 135614|Xanthomonadales E Asparagine synthase asnB2 - 6.3.5.4 ko:K01953 ko00250,ko01100,ko01110,map00250,map01100,map01110 - R00578 RC00010 ko00000,ko00001,ko01000,ko01002 - - - Asn_synthase,GATase_7 SRR25158195_k127_691087_1 522373.Smlt3207 1.419e-197 616.0 COG0022@1|root,COG1071@1|root,COG0022@2|Bacteria,COG1071@2|Bacteria,1P31Y@1224|Proteobacteria,1RQNS@1236|Gammaproteobacteria,1X4XU@135614|Xanthomonadales 135614|Xanthomonadales C MFS transporter - - 1.2.4.4 ko:K11381 ko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130 M00036 R07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997 RC00027,RC00627,RC02743,RC02883,RC02949,RC02953 br01601,ko00000,ko00001,ko00002,ko01000 - - - E1_dh,Transket_pyr,Transketolase_C SRR25158195_k127_705944_6 522373.Smlt1510 8.779e-17 79.0 COG5430@1|root,COG5430@2|Bacteria,1RM0N@1224|Proteobacteria,1SCED@1236|Gammaproteobacteria,1X75C@135614|Xanthomonadales 135614|Xanthomonadales S Spore Coat Protein - - - - - - - - - - - - SCPU SRR25158195_k127_705944_5 522373.Smlt1508 1.132e-85 290.0 COG3121@1|root,COG3121@2|Bacteria,1R4RJ@1224|Proteobacteria,1T8H2@1236|Gammaproteobacteria,1XAPQ@135614|Xanthomonadales 135614|Xanthomonadales M Pilus assembly protein papD1 - - ko:K07346 - - - - ko00000,ko02035,ko02044,ko03110 - - - PapD_N SRR25158195_k127_705944_1 522373.Smlt1507 2.828e-164 522.0 COG0052@1|root,COG0052@2|Bacteria,1MU33@1224|Proteobacteria,1RN0Z@1236|Gammaproteobacteria,1X2XU@135614|Xanthomonadales 135614|Xanthomonadales J Belongs to the universal ribosomal protein uS2 family rpsB GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02967 ko03010,map03010 M00178,M00179 - - br01610,ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_S2 SRR25158195_k127_705944_2 391008.Smal_1265 3.724e-156 496.0 COG0264@1|root,COG0264@2|Bacteria,1MUS2@1224|Proteobacteria,1RPBJ@1236|Gammaproteobacteria,1X3PJ@135614|Xanthomonadales 135614|Xanthomonadales J Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome tsf GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - ko:K02357 - - - - ko00000,ko03012,ko03029 - - - EF_TS SRR25158195_k127_705944_0 522373.Smlt1505 1.663e-307 945.0 COG1639@1|root,COG2199@1|root,COG1639@2|Bacteria,COG3706@2|Bacteria,1MVRF@1224|Proteobacteria,1RPH0@1236|Gammaproteobacteria,1X51G@135614|Xanthomonadales 135614|Xanthomonadales T Diguanylate cyclase - - - - - - - - - - - - GGDEF,HDOD SRR25158195_k127_705944_3 522373.Smlt1504 5.674e-147 468.0 COG0528@1|root,COG0528@2|Bacteria,1MV3N@1224|Proteobacteria,1RMHX@1236|Gammaproteobacteria,1X4J2@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the reversible phosphorylation of UMP to UDP pyrH - 2.7.4.22 ko:K09903 ko00240,ko01100,map00240,map01100 - R00158 RC00002 ko00000,ko00001,ko01000 - - - AA_kinase SRR25158195_k127_705944_4 522373.Smlt1503 5.549e-95 315.0 COG0233@1|root,COG0233@2|Bacteria,1N66T@1224|Proteobacteria,1RN75@1236|Gammaproteobacteria,1X6BR@135614|Xanthomonadales 135614|Xanthomonadales J Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another frr GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - ko:K02838 - - - - ko00000,ko03012 - - - RRF SRR25158195_k127_710243_8 522373.Smlt3255 5.476e-31 121.0 COG1609@1|root,COG1609@2|Bacteria,1MU1G@1224|Proteobacteria,1RMSP@1236|Gammaproteobacteria,1XCEX@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - ko:K02529 - - - - ko00000,ko03000 - - - LacI,Peripla_BP_3 SRR25158195_k127_710243_1 1118235.CAJH01000007_gene476 0.0 1925.0 COG1629@1|root,COG4771@2|Bacteria,1PSM0@1224|Proteobacteria,1T0NW@1236|Gammaproteobacteria,1X3X1@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor - - - - - - - - - - - - CarboxypepD_reg,Plug,TonB_dep_Rec SRR25158195_k127_710243_2 522373.Smlt3253 0.0 1125.0 COG5368@1|root,COG5368@2|Bacteria,1NX2K@1224|Proteobacteria,1RY8M@1236|Gammaproteobacteria,1X3JA@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - Glycoamylase SRR25158195_k127_710243_3 391008.Smal_2683 1.991e-287 887.0 COG1653@1|root,COG1653@2|Bacteria,1MX59@1224|Proteobacteria,1RZSI@1236|Gammaproteobacteria,1X356@135614|Xanthomonadales 135614|Xanthomonadales G ABC transporter substrate-binding protein malE - - ko:K02027 - M00207 - - ko00000,ko00002,ko02000 3.A.1.1 - - SBP_bac_1,SBP_bac_8 SRR25158195_k127_710243_4 522373.Smlt3251 2.776e-188 589.0 COG1175@1|root,COG1175@2|Bacteria,1MVAP@1224|Proteobacteria,1RYI1@1236|Gammaproteobacteria,1XBZB@135614|Xanthomonadales 135614|Xanthomonadales P Binding-protein-dependent transport system inner membrane component - - - ko:K02025 - M00207 - - ko00000,ko00002,ko02000 3.A.1.1 - - BPD_transp_1 SRR25158195_k127_710243_5 522373.Smlt3250 3.215e-165 527.0 COG0395@1|root,COG0395@2|Bacteria,1MUWS@1224|Proteobacteria,1S4G6@1236|Gammaproteobacteria,1X3NS@135614|Xanthomonadales 135614|Xanthomonadales P ABC-type sugar transport system, permease component - - - ko:K02026 - M00207 - - ko00000,ko00002,ko02000 3.A.1.1 - - BPD_transp_1 SRR25158195_k127_710243_0 391008.Smal_2680 0.0 2043.0 COG3408@1|root,COG3408@2|Bacteria,1QU1Q@1224|Proteobacteria,1RRX2@1236|Gammaproteobacteria,1X4YN@135614|Xanthomonadales 135614|Xanthomonadales G coagulation factor 5 8 type - - - - - - - - - - - - Bac_rhamnosid6H,F5_F8_type_C,GDE_C SRR25158195_k127_710243_6 522373.Smlt3248 1.142e-158 505.0 COG3568@1|root,COG3568@2|Bacteria,1N7P6@1224|Proteobacteria,1RXQ1@1236|Gammaproteobacteria,1X6FC@135614|Xanthomonadales 135614|Xanthomonadales G Endonuclease/Exonuclease/phosphatase family - - - - - - - - - - - - Exo_endo_phos SRR25158195_k127_710243_7 391008.Smal_2678 2.333e-151 491.0 COG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,1RMDS@1236|Gammaproteobacteria,1X37S@135614|Xanthomonadales 135614|Xanthomonadales J Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs rne - 3.1.26.12 ko:K08300 ko03018,map03018 M00394 - - ko00000,ko00001,ko00002,ko01000,ko03009,ko03019 - - - RNase_E_G,S1 SRR25158195_k127_719933_6 391008.Smal_3905 1.203e-51 183.0 COG0666@1|root,COG0666@2|Bacteria,1RBYV@1224|Proteobacteria,1SE9G@1236|Gammaproteobacteria,1X3VM@135614|Xanthomonadales 135614|Xanthomonadales S ankyrin repeat ank2 - - ko:K06867 - - - - ko00000 - - - Ank,Ank_2,Ank_4,Ank_5 SRR25158195_k127_719933_1 1429851.X548_18375 0.0 1111.0 COG0475@1|root,COG1226@1|root,COG0475@2|Bacteria,COG1226@2|Bacteria,1MV34@1224|Proteobacteria,1RNVR@1236|Gammaproteobacteria,1X3DT@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family kefC - - ko:K11745,ko:K11747 - - - - ko00000,ko02000 2.A.37.1.1,2.A.37.1.2 - - Na_H_Exchanger,TrkA_N SRR25158195_k127_719933_2 391008.Smal_3903 5.426e-275 850.0 COG2239@1|root,COG2239@2|Bacteria,1MW24@1224|Proteobacteria,1RYH1@1236|Gammaproteobacteria,1X4YV@135614|Xanthomonadales 135614|Xanthomonadales P Acts as a magnesium transporter - - - ko:K06213 - - - - ko00000,ko02000 1.A.26.1 - - CBS,MgtE,MgtE_N SRR25158195_k127_719933_0 522373.Smlt4550 0.0 1745.0 COG1042@1|root,COG1670@1|root,COG1042@2|Bacteria,COG1670@2|Bacteria,1MW98@1224|Proteobacteria,1RPXX@1236|Gammaproteobacteria,1X3FC@135614|Xanthomonadales 135614|Xanthomonadales CJ GCN5 family acetyltransferase - - - ko:K09181 - - - - ko00000 - - - ATP-grasp_5,Acetyltransf_3,CoA_binding_2,Succ_CoA_lig SRR25158195_k127_719933_5 522373.Smlt4544 6.805e-140 446.0 COG2021@1|root,COG2021@2|Bacteria,1RDEH@1224|Proteobacteria,1S75E@1236|Gammaproteobacteria,1X5Y9@135614|Xanthomonadales 135614|Xanthomonadales E Alpha beta hydrolase - - - - - - - - - - - - Abhydrolase_1,Abhydrolase_6 SRR25158195_k127_719933_4 1429851.X548_18325 3.917e-151 503.0 COG0656@1|root,COG0656@2|Bacteria,1MWFS@1224|Proteobacteria,1RMX6@1236|Gammaproteobacteria,1X6T4@135614|Xanthomonadales 135614|Xanthomonadales S Catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid dkgB - 1.1.1.346 ko:K06222 - - - - ko00000,ko01000 - - - Aldo_ket_red SRR25158195_k127_719933_3 522373.Smlt4538 4.387e-228 711.0 COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,1RM9G@1236|Gammaproteobacteria,1X4WQ@135614|Xanthomonadales 135614|Xanthomonadales EGP Major facilitator superfamily - - - - - - - - - - - - MFS_1 SRR25158195_k127_722743_0 1385517.N800_08785 0.0 1356.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1X9HA@135614|Xanthomonadales 135614|Xanthomonadales P TonB dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_722743_1 913325.N799_13035 1.693e-21 93.0 COG3182@1|root,COG3182@2|Bacteria,1R59B@1224|Proteobacteria,1S0MV@1236|Gammaproteobacteria,1XA11@135614|Xanthomonadales 135614|Xanthomonadales S PepSY-associated TM region - - - - - - - - - - - - PepSY_TM SRR25158195_k127_72661_1 391008.Smal_1285 6.737e-176 556.0 COG1917@1|root,COG2207@1|root,COG1917@2|Bacteria,COG2207@2|Bacteria,1MWCA@1224|Proteobacteria,1S31C@1236|Gammaproteobacteria,1XCH1@135614|Xanthomonadales 135614|Xanthomonadales K helix_turn_helix, arabinose operon control protein - - - - - - - - - - - - AraC_binding,HTH_18 SRR25158195_k127_72661_0 522373.Smlt1525 6.364e-289 887.0 COG0188@1|root,COG0188@2|Bacteria,1MURI@1224|Proteobacteria,1RMTC@1236|Gammaproteobacteria,1X336@135614|Xanthomonadales 135614|Xanthomonadales L Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule parC - - ko:K02621 - - - - ko00000,ko01000,ko02048,ko03032,ko03036 - - - DNA_gyraseA_C,DNA_topoisoIV SRR25158195_k127_732378_2 522373.Smlt2714 2.155e-75 256.0 COG1629@1|root,COG4772@1|root,COG1629@2|Bacteria,COG4772@2|Bacteria,1R4GA@1224|Proteobacteria,1RQNP@1236|Gammaproteobacteria,1X9JG@135614|Xanthomonadales 135614|Xanthomonadales P Secretin and TonB N terminus short domain - - - ko:K16087 - - - - ko00000,ko02000 1.B.14.2 - - Plug,TonB_dep_Rec SRR25158195_k127_732378_0 522373.Smlt2715 1.222e-171 544.0 COG3712@1|root,COG3712@2|Bacteria,1RHFD@1224|Proteobacteria,1S5NH@1236|Gammaproteobacteria,1XCPE@135614|Xanthomonadales 135614|Xanthomonadales PT Domain of unknown function (DUF4880) - - - ko:K07165 - - - - ko00000 - - - DUF4880,FecR SRR25158195_k127_732378_1 391008.Smal_2188 3.539e-88 295.0 COG1595@1|root,COG1595@2|Bacteria 2|Bacteria K DNA-templated transcription, initiation - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_732378_3 1429851.X548_09720 3.561e-63 218.0 COG1765@1|root,COG1765@2|Bacteria,1N2BT@1224|Proteobacteria,1SA3V@1236|Gammaproteobacteria,1X7VF@135614|Xanthomonadales 135614|Xanthomonadales O OsmC-like protein - - - ko:K07397 - - - - ko00000 - - - OsmC SRR25158195_k127_734931_2 522373.Smlt4490 4.356e-235 730.0 COG0754@1|root,COG0754@2|Bacteria,1MW6V@1224|Proteobacteria,1RQAP@1236|Gammaproteobacteria,1X3XB@135614|Xanthomonadales 135614|Xanthomonadales E Glutathionylspermidine synthase - - - - - - - - - - - - GSP_synth SRR25158195_k127_734931_4 522373.Smlt4491 1.241e-108 354.0 COG5463@1|root,COG5463@2|Bacteria,1MXGU@1224|Proteobacteria,1RPEV@1236|Gammaproteobacteria,1X6ZJ@135614|Xanthomonadales 135614|Xanthomonadales S integral membrane protein - - - - - - - - - - - - DUF1190 SRR25158195_k127_734931_0 391008.Smal_3851 0.0 1161.0 COG0129@1|root,COG0129@2|Bacteria,1MUTQ@1224|Proteobacteria,1RMP2@1236|Gammaproteobacteria,1X4TP@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the IlvD Edd family ilvD - 4.2.1.9 ko:K01687 ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230 M00019,M00570 R01209,R04441,R05070 RC00468,RC01714 ko00000,ko00001,ko00002,ko01000 - - - ILVD_EDD SRR25158195_k127_734931_3 391008.Smal_3853 9.179e-109 356.0 2DF6E@1|root,32U4S@2|Bacteria,1N20C@1224|Proteobacteria,1SIXC@1236|Gammaproteobacteria,1XAJH@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_734931_1 522373.Smlt4493 6.346e-239 738.0 COG1199@1|root,COG1199@2|Bacteria,1MVCU@1224|Proteobacteria,1RMNX@1236|Gammaproteobacteria,1X5GN@135614|Xanthomonadales 135614|Xanthomonadales KL DNA helicase dinG - 3.6.4.12 ko:K03722 - - - - ko00000,ko01000,ko03400 - - - Helicase_C_2,ResIII SRR25158195_k127_740479_0 1380354.JIAN01000005_gene1924 1.208e-95 335.0 COG1376@1|root,COG1376@2|Bacteria 2|Bacteria D ErfK ybiS ycfS ynhG family protein - - - - - - - - - - - - PQQ_2,YkuD SRR25158195_k127_740479_1 1218084.BBJK01000015_gene1532 9.138e-80 272.0 COG0642@1|root,COG0745@1|root,COG5002@1|root,COG0745@2|Bacteria,COG2205@2|Bacteria,COG5002@2|Bacteria,1NRP8@1224|Proteobacteria,2VJI1@28216|Betaproteobacteria,1JZSA@119060|Burkholderiaceae 28216|Betaproteobacteria T catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - - - - - - - - - - HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg SRR25158195_k127_75115_2 391008.Smal_2629 4.907e-55 193.0 COG2153@1|root,COG2153@2|Bacteria,1MZ86@1224|Proteobacteria,1S8SK@1236|Gammaproteobacteria,1X5TH@135614|Xanthomonadales 135614|Xanthomonadales S COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - - - - - - - - - - Acetyltransf_10 SRR25158195_k127_75115_0 522373.Smlt3197 0.0 1886.0 COG0567@1|root,COG0567@2|Bacteria,1MVBF@1224|Proteobacteria,1RN8K@1236|Gammaproteobacteria,1X4NM@135614|Xanthomonadales 135614|Xanthomonadales C E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate sucA - 1.2.4.2 ko:K00164 ko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00032 R00621,R01933,R01940,R03316,R08549 RC00004,RC00027,RC00627,RC02743,RC02833,RC02883 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr SRR25158195_k127_75115_1 1211114.ALIP01000152_gene2704 1.456e-191 604.0 COG0508@1|root,COG0508@2|Bacteria,1MUJD@1224|Proteobacteria,1RME0@1236|Gammaproteobacteria,1X3Y6@135614|Xanthomonadales 135614|Xanthomonadales C The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) sucB - 2.3.1.61 ko:K00658 ko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00032 R02570,R02571,R08549 RC00004,RC02727,RC02833 br01601,ko00000,ko00001,ko00002,ko01000 - - - 2-oxoacid_dh,Biotin_lipoyl,E3_binding SRR25158195_k127_751483_2 391008.Smal_0729 1.25e-226 705.0 COG0012@1|root,COG0012@2|Bacteria,1MVM4@1224|Proteobacteria,1RMBI@1236|Gammaproteobacteria,1X3B7@135614|Xanthomonadales 135614|Xanthomonadales J ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner ychF - - ko:K06942 - - - - ko00000,ko03009 - - - MMR_HSR1,YchF-GTPase_C SRR25158195_k127_751483_5 522373.Smlt0877 2.405e-123 396.0 COG0193@1|root,COG0193@2|Bacteria,1MX1P@1224|Proteobacteria,1RPK3@1236|Gammaproteobacteria,1X40M@135614|Xanthomonadales 135614|Xanthomonadales J The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis pth GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 ko:K01056 - - - - ko00000,ko01000,ko03012 - - - Pept_tRNA_hydro SRR25158195_k127_751483_6 391008.Smal_0727 1.41e-119 385.0 COG1825@1|root,COG1825@2|Bacteria,1RDH0@1224|Proteobacteria,1S46A@1236|Gammaproteobacteria,1X34R@135614|Xanthomonadales 135614|Xanthomonadales J This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance ctc GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - ko:K02897 ko03010,map03010 M00178 - - ko00000,ko00001,ko00002,ko03011 - - - Ribosomal_L25p,Ribosomal_TL5_C SRR25158195_k127_751483_3 59538.XP_005978341.1 2.116e-204 639.0 COG0462@1|root,KOG1448@2759|Eukaryota,38CQV@33154|Opisthokonta,3BD0G@33208|Metazoa,3CU7N@33213|Bilateria,47ZXS@7711|Chordata,48VRC@7742|Vertebrata,3J2MW@40674|Mammalia,4J3E6@91561|Cetartiodactyla 33208|Metazoa EF Phosphoribosyl pyrophosphate synthetase 2 PRPS2 - 2.7.6.1 ko:K00948 ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230 M00005 R01049 RC00002,RC00078 ko00000,ko00001,ko00002,ko01000 - - - Pribosyl_synth,Pribosyltran_N SRR25158195_k127_751483_4 522373.Smlt0874 2.286e-167 533.0 COG1947@1|root,COG1947@2|Bacteria,1MVU3@1224|Proteobacteria,1RP23@1236|Gammaproteobacteria,1X30B@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol ispE GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 ko:K00919 ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130 M00096 R05634 RC00002,RC01439 ko00000,ko00001,ko00002,ko01000 - - - Acetyltransf_1,GHMP_kinases_C,GHMP_kinases_N SRR25158195_k127_751483_8 553217.ENHAE0001_0339 8.634e-07 59.0 COG3017@1|root,COG3017@2|Bacteria,1N02T@1224|Proteobacteria,1S91E@1236|Gammaproteobacteria,3NJDU@468|Moraxellaceae 1236|Gammaproteobacteria M Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein lolB GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006807,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009279,GO:0010876,GO:0016020,GO:0019538,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0033036,GO:0033218,GO:0034613,GO:0042157,GO:0042277,GO:0043170,GO:0044238,GO:0044462,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0051668,GO:0070727,GO:0071704,GO:0071723,GO:0071944,GO:0072657,GO:1901564 - ko:K02494 - - - - ko00000 - - - LolB SRR25158195_k127_751483_0 391008.Smal_0723 3.275e-316 1003.0 COG0457@1|root,COG0457@2|Bacteria,1MYB8@1224|Proteobacteria,1RQIX@1236|Gammaproteobacteria,1X52S@135614|Xanthomonadales 135614|Xanthomonadales S COG0457 FOG TPR repeat - - - - - - - - - - - - TPR_16,TPR_19,TPR_2,TPR_6,TPR_8 SRR25158195_k127_751483_1 1429851.X548_02160 2.721e-258 798.0 COG0373@1|root,COG0373@2|Bacteria,1MU41@1224|Proteobacteria,1RNQ8@1236|Gammaproteobacteria,1X4P8@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) hemA - 1.2.1.70 ko:K02492 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R04109 RC00055,RC00149 ko00000,ko00001,ko00002,ko01000 - - - GlutR_N,GlutR_dimer,Shikimate_DH SRR25158195_k127_751483_7 1123401.JHYQ01000001_gene1918 9.541e-90 301.0 COG0216@1|root,COG0216@2|Bacteria,1MV28@1224|Proteobacteria,1RM7Q@1236|Gammaproteobacteria,4604F@72273|Thiotrichales 72273|Thiotrichales J Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA prfA - - ko:K02835 - - - - ko00000,ko03012 - - - PCRF,RF-1 SRR25158195_k127_754989_1 522373.Smlt4611 6.065e-101 329.0 COG0463@1|root,COG0463@2|Bacteria,1MW2G@1224|Proteobacteria,1S22P@1236|Gammaproteobacteria,1X3J4@135614|Xanthomonadales 135614|Xanthomonadales M Dolichol-phosphate mannosyltransferase dpm1 - 2.4.1.83 ko:K00721 ko00510,ko01100,map00510,map01100 - R01009 RC00005 ko00000,ko00001,ko01000,ko01003 - GT2 - Glycos_transf_2 SRR25158195_k127_754989_0 522373.Smlt4612 1.896e-205 644.0 COG0451@1|root,COG0451@2|Bacteria,1MU7J@1224|Proteobacteria,1RPTA@1236|Gammaproteobacteria,1X30C@135614|Xanthomonadales 135614|Xanthomonadales M NAD dependent epimerase dehydratase wbnF - 5.1.3.6 ko:K08679 ko00520,ko01100,map00520,map01100 - R01385 RC00289 ko00000,ko00001,ko01000 - - - Epimerase,GDP_Man_Dehyd SRR25158195_k127_754989_2 391008.Smal_3965 1.198e-55 195.0 COG1475@1|root,COG1475@2|Bacteria,1MW2E@1224|Proteobacteria,1RN65@1236|Gammaproteobacteria,1X3IJ@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the ParB family parB - - ko:K03497 - - - - ko00000,ko03000,ko03036,ko04812 - - - ParBc SRR25158195_k127_755992_1 522373.Smlt1256 5.827e-77 258.0 COG3832@1|root,COG3832@2|Bacteria,1RDGX@1224|Proteobacteria,1S4FQ@1236|Gammaproteobacteria,1X4UZ@135614|Xanthomonadales 135614|Xanthomonadales S Polyketide cyclase - - - - - - - - - - - - Polyketide_cyc2 SRR25158195_k127_755992_2 391008.Smal_1101 4.573e-62 216.0 COG2363@1|root,COG2363@2|Bacteria,1N966@1224|Proteobacteria,1T6XK@1236|Gammaproteobacteria,1X8D4@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF423) - - - - - - - - - - - - DUF423 SRR25158195_k127_755992_0 522373.Smlt1259 1.515e-79 265.0 COG1876@1|root,COG1876@2|Bacteria,1N1CQ@1224|Proteobacteria,1S4PP@1236|Gammaproteobacteria,1XCJ9@135614|Xanthomonadales 135614|Xanthomonadales M peptidase - - 3.4.17.14 ko:K07260 ko00550,ko01100,ko01502,ko02020,map00550,map01100,map01502,map02020 M00651 - - ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504 - - - VanY SRR25158195_k127_763416_0 522373.Smlt3820 1.213e-200 627.0 COG0714@1|root,COG0714@2|Bacteria,1MUFN@1224|Proteobacteria,1RN5G@1236|Gammaproteobacteria,1X580@135614|Xanthomonadales 135614|Xanthomonadales S ATPase (AAA - - - ko:K03924 - - - - ko00000,ko01000 - - - AAA_3 SRR25158195_k127_772073_0 522373.Smlt0095 2.503e-243 752.0 COG0210@1|root,COG0210@2|Bacteria,1MU0G@1224|Proteobacteria,1RNJI@1236|Gammaproteobacteria,1X3YJ@135614|Xanthomonadales 135614|Xanthomonadales L it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction rep - 3.6.4.12 ko:K03656 - - - - ko00000,ko01000,ko03400 - - - UvrD-helicase,UvrD_C SRR25158195_k127_772073_2 391008.Smal_0051 1.862e-95 315.0 COG1670@1|root,COG1670@2|Bacteria,1NH44@1224|Proteobacteria,1S1ZW@1236|Gammaproteobacteria,1X7YW@135614|Xanthomonadales 135614|Xanthomonadales J Acetyltransferase (GNAT) domain - - - - - - - - - - - - Acetyltransf_3 SRR25158195_k127_772073_1 522373.Smlt0097 7.891e-116 375.0 COG3132@1|root,COG3132@2|Bacteria,1RA13@1224|Proteobacteria,1RQUQ@1236|Gammaproteobacteria,1X6JM@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the UPF0502 family - - - ko:K09915 - - - - ko00000 - - - DUF480 SRR25158195_k127_772073_3 522373.Smlt0098 3.909e-70 252.0 COG2503@1|root,COG2503@2|Bacteria,1RB4N@1224|Proteobacteria,1SB1V@1236|Gammaproteobacteria,1X3JI@135614|Xanthomonadales 135614|Xanthomonadales S Acid phosphatase lppC - - - - - - - - - - - Acid_phosphat_B SRR25158195_k127_777680_1 360094.PXO_04700 4.334e-97 348.0 COG3501@1|root,COG4253@1|root,COG3501@2|Bacteria,COG4253@2|Bacteria,1MU7Q@1224|Proteobacteria,1RN6G@1236|Gammaproteobacteria,1XCAW@135614|Xanthomonadales 135614|Xanthomonadales S Type IV secretion protein Rhs - - - ko:K11904 ko03070,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - DUF2345,Phage_GPD,T6SS_Vgr SRR25158195_k127_777680_0 59538.XP_005976537.1 4.264e-211 660.0 COG0621@1|root,KOG2492@2759|Eukaryota,3AA8B@33154|Opisthokonta,3BVCM@33208|Metazoa,3DB6Y@33213|Bilateria 33208|Metazoa J Uncharacterized protein family UPF0054 - - - - - - - - - - - - PhoH,UPF0054 SRR25158195_k127_777680_2 391008.Smal_1352 1.725e-93 318.0 COG0319@1|root,COG0319@2|Bacteria,1MZ67@1224|Proteobacteria,1S6BS@1236|Gammaproteobacteria,1X546@135614|Xanthomonadales 135614|Xanthomonadales J Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA ybeY - - ko:K07042 - - - - ko00000,ko03009 - - - UPF0054 SRR25158195_k127_777680_3 1429851.X548_05500 1.733e-80 275.0 2BZPC@1|root,32RYC@2|Bacteria,1N36B@1224|Proteobacteria,1SVIW@1236|Gammaproteobacteria,1X74Q@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_777680_4 391008.Smal_1349 2.955e-26 112.0 COG4535@1|root,COG4535@2|Bacteria,1QTU8@1224|Proteobacteria,1RMKX@1236|Gammaproteobacteria,1X3M9@135614|Xanthomonadales 135614|Xanthomonadales P Transporter corC - - ko:K06189 - - - - ko00000,ko02000 9.A.40.1.2 - - CBS,CorC_HlyC SRR25158195_k127_77774_2 1429851.X548_00255 3.575e-27 110.0 COG1011@1|root,COG1011@2|Bacteria,1MX48@1224|Proteobacteria,1SNTC@1236|Gammaproteobacteria,1X3KD@135614|Xanthomonadales 135614|Xanthomonadales S haloacid dehalogenase - - - ko:K07025 - - - - ko00000 - - - HAD_2,Hydrolase SRR25158195_k127_77774_1 391008.Smal_0348 3.945e-91 304.0 2ED7H@1|root,33743@2|Bacteria,1NP9S@1224|Proteobacteria,1T70D@1236|Gammaproteobacteria,1X8IH@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_77774_0 522373.Smlt0470 1.41e-268 829.0 COG5383@1|root,COG5383@2|Bacteria,1P16G@1224|Proteobacteria,1RR9P@1236|Gammaproteobacteria,1X3WK@135614|Xanthomonadales 135614|Xanthomonadales S DUF1338 - - - - - - - - - - - - DUF1338 SRR25158195_k127_778355_2 391008.Smal_1075 9.693e-55 192.0 COG0331@1|root,COG0331@2|Bacteria,1PPIC@1224|Proteobacteria,1SG1U@1236|Gammaproteobacteria,1X7GE@135614|Xanthomonadales 135614|Xanthomonadales I Acyl transferase domain mdcH - 2.3.1.39 ko:K00645 ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212 M00082 R01626,R11671 RC00004,RC00039,RC02727 ko00000,ko00001,ko00002,ko01000,ko01004 - - - Acyl_transf_1 SRR25158195_k127_778355_0 522373.Smlt1225 7.573e-264 816.0 COG1055@1|root,COG1055@2|Bacteria,1MVJW@1224|Proteobacteria,1SJNP@1236|Gammaproteobacteria,1XC3K@135614|Xanthomonadales 135614|Xanthomonadales P Dicarboxylate carrier protein MatC N-terminus - - - - - - - - - - - - CitMHS,MatC_N SRR25158195_k127_778355_1 391008.Smal_1073 7.06e-139 468.0 COG1802@1|root,COG1802@2|Bacteria,1PVIG@1224|Proteobacteria,1SZ77@1236|Gammaproteobacteria,1XCEK@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - FCD,GntR SRR25158195_k127_786282_2 1429851.X548_16695 1.313e-195 611.0 COG1807@1|root,COG1807@2|Bacteria,1MXH5@1224|Proteobacteria,1RSQE@1236|Gammaproteobacteria,1X415@135614|Xanthomonadales 135614|Xanthomonadales M 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - - - - - - - - - - PMT_2 SRR25158195_k127_786282_0 522373.Smlt4176 2.388e-262 811.0 COG0144@1|root,COG0781@1|root,COG0144@2|Bacteria,COG0781@2|Bacteria,1MWPE@1224|Proteobacteria,1RN8X@1236|Gammaproteobacteria,1X3MB@135614|Xanthomonadales 135614|Xanthomonadales J Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA sun GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.176 ko:K03500 - - - - ko00000,ko01000,ko03009 - - - Methyltr_RsmB-F,NusB SRR25158195_k127_786282_3 522373.Smlt4177 2.74e-182 577.0 COG0223@1|root,COG0223@2|Bacteria,1MU4Q@1224|Proteobacteria,1RP1T@1236|Gammaproteobacteria,1X45U@135614|Xanthomonadales 135614|Xanthomonadales J Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus fmt GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 ko:K00604 ko00670,ko00970,map00670,map00970 - R03940 RC00026,RC00165 ko00000,ko00001,ko01000 - - - Formyl_trans_C,Formyl_trans_N SRR25158195_k127_786282_4 391008.Smal_3585 5.143e-101 331.0 COG0242@1|root,COG0242@2|Bacteria,1RA2P@1224|Proteobacteria,1S247@1236|Gammaproteobacteria,1X4UT@135614|Xanthomonadales 135614|Xanthomonadales J Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions def GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 ko:K01462 - - - - ko00000,ko01000 - - - Pep_deformylase SRR25158195_k127_786282_1 522373.Smlt4179 3.212e-227 706.0 COG1652@1|root,COG1652@2|Bacteria,1MUBV@1224|Proteobacteria,1RPMB@1236|Gammaproteobacteria,1X3I7@135614|Xanthomonadales 135614|Xanthomonadales S peptidoglycan-binding protein, lysm - - - - - - - - - - - - LysM SRR25158195_k127_786282_5 522373.Smlt4180 1.887e-28 117.0 COG0758@1|root,COG0758@2|Bacteria,1MVF6@1224|Proteobacteria,1RPJE@1236|Gammaproteobacteria,1X2Y5@135614|Xanthomonadales 135614|Xanthomonadales LU DNA processing protein DprA smf - - ko:K04096 - - - - ko00000 - - - DNA_processg_A SRR25158195_k127_787842_1 391008.Smal_2889 6.562e-77 259.0 COG1301@1|root,COG1301@2|Bacteria,1MU0Q@1224|Proteobacteria,1RMEN@1236|Gammaproteobacteria,1X559@135614|Xanthomonadales 135614|Xanthomonadales U Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family gltT - - - - - - - - - - - SDF SRR25158195_k127_787842_0 1429851.X548_13075 0.0 1088.0 COG1785@1|root,COG1785@2|Bacteria,1MXI2@1224|Proteobacteria,1RNG8@1236|Gammaproteobacteria,1X4AG@135614|Xanthomonadales 135614|Xanthomonadales P Belongs to the alkaline phosphatase family phoA - 3.1.3.1 ko:K01077 ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020 M00126 R02135,R04620 RC00017 ko00000,ko00001,ko00002,ko00537,ko01000,ko04147 - - - Alk_phosphatase SRR25158195_k127_787842_2 522373.Smlt3465 2.201e-56 198.0 COG0037@1|root,COG0037@2|Bacteria,1MU85@1224|Proteobacteria,1RN14@1236|Gammaproteobacteria,1X3XY@135614|Xanthomonadales 135614|Xanthomonadales D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine tilS - 6.3.4.19 ko:K04075 - - R09597 RC02633,RC02634 ko00000,ko01000,ko03016 - - - ATP_bind_3,TilS,TilS_C SRR25158195_k127_796036_0 391008.Smal_1851 0.0 1033.0 COG0840@1|root,COG2770@1|root,COG0840@2|Bacteria,COG2770@2|Bacteria,1MU9B@1224|Proteobacteria,1RMH0@1236|Gammaproteobacteria,1X3KX@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein - - - ko:K03406,ko:K05874 ko02020,ko02030,map02020,map02030 - - - ko00000,ko00001,ko02035 - - - 4HB_MCP_1,MCPsignal,sCache_2 SRR25158195_k127_796036_1 317013.NY99_16005 2.48e-253 787.0 COG0643@1|root,COG2198@1|root,COG0643@2|Bacteria,COG2198@2|Bacteria,1MUAG@1224|Proteobacteria,1RMS6@1236|Gammaproteobacteria,1X49D@135614|Xanthomonadales 135614|Xanthomonadales NT chemotaxis protein cheA1 - 2.7.13.3 ko:K03407 ko02020,ko02030,map02020,map02030 M00506 - - ko00000,ko00001,ko00002,ko01000,ko01001,ko02022,ko02035 - - - CheW,H-kinase_dim,HATPase_c,Hpt SRR25158195_k127_799499_0 522373.Smlt1144 0.0 1096.0 COG1629@1|root,COG4771@2|Bacteria,1MUC1@1224|Proteobacteria,1RNHR@1236|Gammaproteobacteria,1X5K3@135614|Xanthomonadales 135614|Xanthomonadales P TonB-dependent receptor - - - ko:K16089 - - - - ko00000,ko02000 1.B.14.1,1.B.14.10 - - Plug,TonB_dep_Rec SRR25158195_k127_801785_2 157783.LK03_18865 1.71e-39 149.0 28MHW@1|root,2ZAUQ@2|Bacteria,1QGA6@1224|Proteobacteria,1SQ83@1236|Gammaproteobacteria 1236|Gammaproteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_801785_0 522373.Smlt3089 2.607e-208 648.0 COG0583@1|root,COG0583@2|Bacteria,1MXDQ@1224|Proteobacteria,1RPBS@1236|Gammaproteobacteria,1X4DP@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator VL23_16385 - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_801785_1 522373.Smlt3090 9.377e-114 368.0 COG1182@1|root,COG1182@2|Bacteria,1P59R@1224|Proteobacteria,1S337@1236|Gammaproteobacteria,1X6B8@135614|Xanthomonadales 135614|Xanthomonadales I Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity azoR - - ko:K01118 - - - - ko00000,ko01000 - - - Flavodoxin_2 SRR25158195_k127_803377_1 522373.Smlt1611 1.972e-50 179.0 COG0157@1|root,COG0157@2|Bacteria,1MW0C@1224|Proteobacteria,1RMBU@1236|Gammaproteobacteria,1X36W@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the NadC ModD family nadC - 2.4.2.19 ko:K00767 ko00760,ko01100,map00760,map01100 M00115 R03348 RC02877 ko00000,ko00001,ko00002,ko01000 - - - QRPTase_C,QRPTase_N SRR25158195_k127_803377_0 391008.Smal_1367 4.614e-191 599.0 COG4322@1|root,COG4322@2|Bacteria,1NCIY@1224|Proteobacteria,1SZ79@1236|Gammaproteobacteria,1XCTQ@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized protein conserved in bacteria (DUF2272) - - - - - - - - - - - - DUF2272 SRR25158195_k127_804647_1 522373.Smlt0777 4.656e-200 629.0 COG0823@1|root,COG1506@1|root,COG0823@2|Bacteria,COG1506@2|Bacteria,1N75C@1224|Proteobacteria,1RXY1@1236|Gammaproteobacteria,1X51F@135614|Xanthomonadales 135614|Xanthomonadales E Prolyl oligopeptidase family - - - - - - - - - - - - PD40,Peptidase_S9 SRR25158195_k127_804647_0 522373.Smlt0775 5.742e-319 977.0 COG0499@1|root,COG0499@2|Bacteria,1MUQ2@1224|Proteobacteria,1RMW8@1236|Gammaproteobacteria,1X33V@135614|Xanthomonadales 135614|Xanthomonadales H May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine ahcY GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 ko:K01251 ko00270,ko01100,map00270,map01100 M00035 R00192,R04936 RC00056,RC00069,RC01161,RC01243 ko00000,ko00001,ko00002,ko01000,ko01009,ko04147 - - - AdoHcyase,AdoHcyase_NAD SRR25158195_k127_804647_2 522373.Smlt0774 2.338e-53 192.0 COG2606@1|root,COG2606@2|Bacteria,1RGX5@1224|Proteobacteria,1S6S0@1236|Gammaproteobacteria,1X7Q2@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily ybaK - - ko:K03976 - - - - ko00000,ko01000,ko03016 - - - tRNA_edit SRR25158195_k127_812226_3 1429851.X548_09940 6.994e-17 83.0 COG0746@1|root,COG0746@2|Bacteria,1NAYX@1224|Proteobacteria,1SCS5@1236|Gammaproteobacteria,1XCJG@135614|Xanthomonadales 135614|Xanthomonadales H Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor - - 2.7.7.77 ko:K03752 ko00790,ko01100,map00790,map01100 - R11581 - ko00000,ko00001,ko01000 - - - NTP_transf_3 SRR25158195_k127_812226_1 522373.Smlt2778 7.043e-94 308.0 COG0314@1|root,COG0314@2|Bacteria,1RGUX@1224|Proteobacteria,1S5YH@1236|Gammaproteobacteria,1X6F7@135614|Xanthomonadales 135614|Xanthomonadales H molybdopterin converting factor moaE - 2.8.1.12 ko:K03635 ko00790,ko01100,ko04122,map00790,map01100,map04122 - R09395 RC02507 ko00000,ko00001,ko01000 - - - MoaE SRR25158195_k127_812226_2 391008.Smal_2241 1.923e-39 157.0 COG1977@1|root,COG1977@2|Bacteria,1QDHR@1224|Proteobacteria,1T9I9@1236|Gammaproteobacteria,1X8BV@135614|Xanthomonadales 135614|Xanthomonadales H Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin - - - ko:K03636 ko04122,map04122 - - - ko00000,ko00001 - - - ThiS SRR25158195_k127_812226_0 1429851.X548_09955 3.367e-149 475.0 COG0303@1|root,COG0303@2|Bacteria,1MVD5@1224|Proteobacteria,1SN7Y@1236|Gammaproteobacteria,1X4R2@135614|Xanthomonadales 135614|Xanthomonadales H molybdopterin biosynthesis moeA2 - 2.10.1.1 ko:K03750 ko00790,ko01100,map00790,map01100 - R09735 RC03462 ko00000,ko00001,ko01000 - - - MoCF_biosynth,MoeA_C,MoeA_N SRR25158195_k127_814078_4 522373.Smlt1734 1.447e-85 284.0 COG0294@1|root,COG0294@2|Bacteria,1MUIR@1224|Proteobacteria,1RM8G@1236|Gammaproteobacteria,1X3ZA@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives folP - 2.5.1.15 ko:K00796 ko00790,ko01100,map00790,map01100 M00126,M00841 R03066,R03067 RC00121,RC00842 ko00000,ko00001,ko00002,ko01000 - - - Pterin_bind SRR25158195_k127_814078_2 391008.Smal_1470 6.017e-187 586.0 COG0324@1|root,COG0324@2|Bacteria,1MUB2@1224|Proteobacteria,1RMDU@1236|Gammaproteobacteria,1X3TF@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) miaA GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 ko:K00791 ko00908,ko01100,ko01110,map00908,map01100,map01110 - R01122 RC02820 ko00000,ko00001,ko01000,ko01006,ko03016 - - - IPPT SRR25158195_k127_814078_5 391008.Smal_1471 1.101e-50 180.0 COG1923@1|root,COG1923@2|Bacteria,1MZM1@1224|Proteobacteria,1S8W0@1236|Gammaproteobacteria,1X78T@135614|Xanthomonadales 135614|Xanthomonadales J RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs hfq - - ko:K03666 ko02024,ko03018,ko05111,map02024,map03018,map05111 - - - ko00000,ko00001,ko03019,ko03036 - - - Hfq SRR25158195_k127_814078_1 391008.Smal_1472 2.119e-271 836.0 COG2262@1|root,COG2262@2|Bacteria,1MUA0@1224|Proteobacteria,1RN7V@1236|Gammaproteobacteria,1X3MI@135614|Xanthomonadales 135614|Xanthomonadales S GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis hflX - - ko:K03665 - - - - ko00000,ko03009 - - - GTP-bdg_M,GTP-bdg_N,MMR_HSR1 SRR25158195_k127_814078_3 391008.Smal_1473 1.856e-94 312.0 COG1546@1|root,COG1546@2|Bacteria,1RH2Y@1224|Proteobacteria,1S5WH@1236|Gammaproteobacteria,1X5YM@135614|Xanthomonadales 135614|Xanthomonadales S Belongs to the CinA family - - 3.5.1.42 ko:K03743 ko00760,map00760 - R02322 RC00100 ko00000,ko00001,ko01000 - - - CinA SRR25158195_k127_814078_0 391008.Smal_1474 0.0 1044.0 COG0661@1|root,COG0661@2|Bacteria,1MU1Z@1224|Proteobacteria,1RNQ9@1236|Gammaproteobacteria,1X410@135614|Xanthomonadales 135614|Xanthomonadales S Ubiquinone biosynthesis protein aarF - - ko:K03688 - - - - ko00000 - - - ABC1 SRR25158195_k127_814509_0 522373.Smlt1104 4.059e-299 919.0 COG1080@1|root,COG1080@2|Bacteria,1MUT8@1224|Proteobacteria,1RN6R@1236|Gammaproteobacteria,1X33X@135614|Xanthomonadales 135614|Xanthomonadales G General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) ptsI - 2.7.3.9 ko:K08483 ko02060,map02060 - - - ko00000,ko00001,ko01000,ko02000 8.A.7 - - PEP-utilisers_N,PEP-utilizers,PEP-utilizers_C SRR25158195_k127_817564_2 1429851.X548_16170 4.534e-135 436.0 COG0577@1|root,COG0577@2|Bacteria,1QSVW@1224|Proteobacteria,1RPBM@1236|Gammaproteobacteria,1X4WM@135614|Xanthomonadales 135614|Xanthomonadales V ABC-type antimicrobial peptide transport system, permease component - - - ko:K02004 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - FtsX,MacB_PCD SRR25158195_k127_817564_1 1429851.X548_16165 2.002e-146 465.0 COG1136@1|root,COG1136@2|Bacteria,1NHCD@1224|Proteobacteria,1RNIX@1236|Gammaproteobacteria,1X4CB@135614|Xanthomonadales 135614|Xanthomonadales V abc transporter atp-binding protein ycfV - - ko:K02003 - M00258 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran SRR25158195_k127_817564_0 522373.Smlt4100 3.482e-246 766.0 COG0845@1|root,COG0845@2|Bacteria,1NQDN@1224|Proteobacteria,1RRFE@1236|Gammaproteobacteria,1X3QX@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family ybjY - - ko:K02005 - - - - ko00000 - - - Biotin_lipoyl_2,HlyD_3,HlyD_D23 SRR25158195_k127_817564_3 522373.Smlt4099 7.86e-112 362.0 COG0449@1|root,COG0449@2|Bacteria,1MW4K@1224|Proteobacteria,1RMVN@1236|Gammaproteobacteria,1X43R@135614|Xanthomonadales 135614|Xanthomonadales M Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source glmS GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 ko:K00820 ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931 - R00768 RC00010,RC00163,RC02752 ko00000,ko00001,ko01000,ko01002 - - - GATase_6,SIS SRR25158195_k127_823248_0 391008.Smal_3314 0.0 1214.0 COG1629@1|root,COG4206@1|root,COG1629@2|Bacteria,COG4206@2|Bacteria,1R4GA@1224|Proteobacteria,1RQNP@1236|Gammaproteobacteria,1X9GQ@135614|Xanthomonadales 135614|Xanthomonadales HP Secretin and TonB N terminus short domain - - - ko:K16087 - - - - ko00000,ko02000 1.B.14.2 - - Plug,TonB_dep_Rec SRR25158195_k127_823248_1 391008.Smal_3313 4.251e-43 158.0 COG2040@1|root,COG2040@2|Bacteria,1N7A3@1224|Proteobacteria,1SCA1@1236|Gammaproteobacteria,1X8UY@135614|Xanthomonadales 135614|Xanthomonadales E Protein of unknown function (DUF2789) - - - - - - - - - - - - DUF2789 SRR25158195_k127_839493_3 1118235.CAJH01000066_gene3571 2.302e-25 111.0 COG3577@1|root,COG3577@2|Bacteria 2|Bacteria S aspartic-type endopeptidase activity - - - - - - - - - - - - Asp_protease_2,PDZ_2,gag-asp_proteas SRR25158195_k127_839493_0 194867.ALBQ01000018_gene2632 3.64e-60 224.0 COG0845@1|root,COG0845@2|Bacteria,1R3R4@1224|Proteobacteria,2U45N@28211|Alphaproteobacteria,2K5J5@204457|Sphingomonadales 204457|Sphingomonadales M Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - ko:K13408 ko04626,map04626 M00339 - - ko00000,ko00001,ko00002,ko02000,ko02044 8.A.1 - - Biotin_lipoyl_2,HlyD_3 SRR25158195_k127_839493_1 59538.XP_005976091.1 1.003e-42 162.0 COG1132@1|root,KOG0058@2759|Eukaryota,38F7P@33154|Opisthokonta,3BCBZ@33208|Metazoa,3CREB@33213|Bilateria,489V8@7711|Chordata,4942Z@7742|Vertebrata,3JFYG@40674|Mammalia,4J2ND@91561|Cetartiodactyla 33208|Metazoa U ATP-binding cassette sub-family B - - - - - - - - - - - - ABC_membrane,ABC_tran,Peptidase_C39 SRR25158195_k127_843745_0 1429851.X548_10285 3.637e-161 509.0 COG0583@1|root,COG0583@2|Bacteria,1MVGZ@1224|Proteobacteria,1RRFH@1236|Gammaproteobacteria,1X88R@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - HTH_1,LysR_substrate SRR25158195_k127_843745_1 1429851.X548_10280 1.786e-55 196.0 COG2076@1|root,COG2076@2|Bacteria,1RJKJ@1224|Proteobacteria,1S6SR@1236|Gammaproteobacteria,1X8S7@135614|Xanthomonadales 135614|Xanthomonadales P Small Multidrug Resistance protein - - - ko:K11743 - M00711 - - ko00000,ko00002,ko02000 2.A.7.1.9 - - Multi_Drug_Res SRR25158195_k127_843745_2 391008.Smal_2304 3.364e-19 93.0 COG2076@1|root,COG2076@2|Bacteria,1RIBK@1224|Proteobacteria,1S68D@1236|Gammaproteobacteria 1236|Gammaproteobacteria U Catalyzes the excretion of spermidine mdtI GO:0003674,GO:0005215,GO:0005326,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006836,GO:0008150,GO:0008324,GO:0008519,GO:0015075,GO:0015101,GO:0015199,GO:0015203,GO:0015220,GO:0015291,GO:0015297,GO:0015606,GO:0015651,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0015846,GO:0015848,GO:0015871,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0031460,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0072349,GO:0072488,GO:0098655,GO:1902047,GO:1903711 - ko:K11742 - M00711 - - ko00000,ko00002,ko02000 2.A.7.1.9 - - Multi_Drug_Res SRR25158195_k127_844330_4 391008.Smal_2599 1.029e-06 52.0 COG0654@1|root,COG0654@2|Bacteria,1R7UC@1224|Proteobacteria,1S1B9@1236|Gammaproteobacteria,1X3BJ@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid kmo GO:0003674,GO:0003824,GO:0004497,GO:0008150,GO:0008152,GO:0009058,GO:0016491,GO:0019748,GO:0044550,GO:0055114 1.14.13.9 ko:K00486 ko00380,ko01100,map00380,map01100 M00038 R01960 RC00046 ko00000,ko00001,ko00002,ko01000 - - - FAD_binding_3 SRR25158195_k127_844330_0 522373.Smlt3160 2.087e-272 840.0 COG3844@1|root,COG3844@2|Bacteria,1MUKN@1224|Proteobacteria,1RPY3@1236|Gammaproteobacteria,1X3FQ@135614|Xanthomonadales 135614|Xanthomonadales E Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively kynU GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016822,GO:0016823,GO:0019439,GO:0019441,GO:0019752,GO:0030429,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.7.1.3 ko:K01556 ko00380,ko01100,map00380,map01100 M00038 R00987,R02668,R03936 RC00284,RC00415 ko00000,ko00001,ko00002,ko01000 - - - Aminotran_5 SRR25158195_k127_844330_2 59538.XP_005977983.1 9.572e-112 363.0 KOG3995@1|root,KOG3995@2759|Eukaryota,38H2Q@33154|Opisthokonta,3B9VR@33208|Metazoa,3CXG2@33213|Bilateria,48347@7711|Chordata,492XW@7742|Vertebrata,3J8PI@40674|Mammalia,4JB4F@91561|Cetartiodactyla 33208|Metazoa E 3-hydroxyanthranilate 3,4-dioxygenase - - 1.13.11.6 ko:K00452 ko00380,ko01100,map00380,map01100 M00038 R02665 RC00387 ko00000,ko00001,ko00002,ko01000 - - - 3-HAO SRR25158195_k127_844330_1 391008.Smal_2596 2.044e-137 440.0 COG0288@1|root,COG0288@2|Bacteria,1NGFN@1224|Proteobacteria,1RSY6@1236|Gammaproteobacteria,1X2YU@135614|Xanthomonadales 135614|Xanthomonadales P Reversible hydration of carbon dioxide yadF - 4.2.1.1 ko:K01673 ko00910,map00910 - R00132,R10092 RC02807 ko00000,ko00001,ko01000 - - - Pro_CA SRR25158195_k127_844330_3 522373.Smlt3157 2.109e-77 260.0 COG2808@1|root,COG2808@2|Bacteria,1N1B9@1224|Proteobacteria,1S7MT@1236|Gammaproteobacteria,1X6HS@135614|Xanthomonadales 135614|Xanthomonadales K transcriptional regulator paiB - - ko:K07734 - - - - ko00000,ko03000 - - - FMN_bind_2 SRR25158195_k127_849264_0 522373.Smlt0959 3.086e-240 743.0 COG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,1RNS6@1236|Gammaproteobacteria,1X3NP@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA kbl - 2.3.1.29 ko:K00639 ko00260,map00260 - R00371 RC00004,RC00394 ko00000,ko00001,ko01000,ko01007 - - - Aminotran_1_2 SRR25158195_k127_849264_2 1429851.X548_02590 2.669e-132 424.0 2C5U9@1|root,2Z9NJ@2|Bacteria,1R6D0@1224|Proteobacteria,1T076@1236|Gammaproteobacteria,1XCYZ@135614|Xanthomonadales 135614|Xanthomonadales S Bacterial protein of unknown function (Gcw_chp) - - - - - - - - - - - - Gcw_chp SRR25158195_k127_849264_1 522373.Smlt0961 2.847e-228 706.0 COG1063@1|root,COG1063@2|Bacteria,1MV9A@1224|Proteobacteria,1RMNY@1236|Gammaproteobacteria,1X49B@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate tdh - 1.1.1.103 ko:K00060 ko00260,map00260 - R01465 RC00525 ko00000,ko00001,ko01000 - - - ADH_N,ADH_zinc_N SRR25158195_k127_851927_3 522373.Smlt3218 1.014e-137 437.0 COG2829@1|root,COG2829@2|Bacteria,1PC8I@1224|Proteobacteria,1RMJH@1236|Gammaproteobacteria,1X44M@135614|Xanthomonadales 135614|Xanthomonadales M phospholipase pldA - 3.1.1.32,3.1.1.4 ko:K01058 ko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,map00564,map00565,map00590,map00591,map00592,map01100,map01110 - R01315,R01316,R01317,R02053,R02054,R04034,R07064,R07379,R07387,R07859,R07860 RC00020,RC00037,RC00041,RC00094 ko00000,ko00001,ko01000 - - - PLA1 SRR25158195_k127_851927_6 1429851.X548_11730 7.058e-53 192.0 COG1393@1|root,COG1393@2|Bacteria,1MZ4Z@1224|Proteobacteria,1S8XH@1236|Gammaproteobacteria,1X8BZ@135614|Xanthomonadales 135614|Xanthomonadales P ArsC family - - 1.20.4.1 ko:K00537 - - - - ko00000,ko01000 - - - ArsC SRR25158195_k127_851927_4 391008.Smal_2653 2.304e-120 389.0 COG0625@1|root,COG0625@2|Bacteria,1MY47@1224|Proteobacteria,1RRI3@1236|Gammaproteobacteria,1X3MP@135614|Xanthomonadales 135614|Xanthomonadales O glutathione s-transferase gst4 - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C_2,GST_C_3,GST_N,GST_N_3 SRR25158195_k127_851927_0 391008.Smal_2655 0.0 1020.0 COG1838@1|root,COG1951@1|root,COG1838@2|Bacteria,COG1951@2|Bacteria,1MUV9@1224|Proteobacteria,1RN8U@1236|Gammaproteobacteria,1X3DC@135614|Xanthomonadales 135614|Xanthomonadales C Catalyzes the reversible hydration of fumarate to (S)- malate fumB - 4.2.1.2 ko:K01676 ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200 M00009,M00011,M00173,M00374 R01082 RC00443 ko00000,ko00001,ko00002,ko01000 - - - Fumerase,Fumerase_C SRR25158195_k127_851927_2 522373.Smlt3223 1.471e-177 561.0 COG1595@1|root,COG1595@2|Bacteria,1MXVA@1224|Proteobacteria,1S2J2@1236|Gammaproteobacteria,1X5VZ@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily - - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_851927_5 522373.Smlt3224 5.697e-87 288.0 COG2128@1|root,COG2128@2|Bacteria,1RD1K@1224|Proteobacteria,1T09R@1236|Gammaproteobacteria,1X6G3@135614|Xanthomonadales 135614|Xanthomonadales O Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - - - - - - - - - - CMD SRR25158195_k127_851927_1 391008.Smal_2658 2.259e-224 701.0 COG1132@1|root,COG1132@2|Bacteria,1MXC2@1224|Proteobacteria,1SZTS@1236|Gammaproteobacteria,1X4EA@135614|Xanthomonadales 135614|Xanthomonadales V abc transporter atp-binding protein - - - ko:K06147 - - - - ko00000,ko02000 3.A.1.106,3.A.1.109,3.A.1.21 - - ABC_membrane,ABC_tran SRR25158195_k127_868928_2 1429851.X548_14175 4.708e-45 166.0 2ET5N@1|root,311VW@2|Bacteria,1R3HC@1224|Proteobacteria,1T681@1236|Gammaproteobacteria,1XDI8@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_868928_0 1429851.X548_14170 0.0 1375.0 COG0317@1|root,COG0317@2|Bacteria,1MU44@1224|Proteobacteria,1RN3H@1236|Gammaproteobacteria,1X3FJ@135614|Xanthomonadales 135614|Xanthomonadales KT In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance relA - 2.7.6.5 ko:K00951 ko00230,map00230 - R00429 RC00002,RC00078 ko00000,ko00001,ko01000 - - - ACT_4,HD_4,RelA_SpoT,TGS SRR25158195_k127_868928_1 522373.Smlt3684 1.622e-66 229.0 COG4783@1|root,COG4783@2|Bacteria,1QU1C@1224|Proteobacteria,1S9U6@1236|Gammaproteobacteria,1X4QZ@135614|Xanthomonadales 135614|Xanthomonadales S chaperone-mediated protein folding - - - - - - - - - - - - - SRR25158195_k127_875136_6 391008.Smal_0170 1.267e-76 257.0 COG0318@1|root,COG0318@2|Bacteria,1R5I6@1224|Proteobacteria,1RNFC@1236|Gammaproteobacteria,1X52P@135614|Xanthomonadales 135614|Xanthomonadales IQ Peptide synthase - - 6.1.3.1 ko:K22319 - - - - ko00000,ko01000 - - - AMP-binding SRR25158195_k127_875136_2 1429851.X548_20010 2.083e-207 648.0 COG0451@1|root,COG0451@2|Bacteria,1P603@1224|Proteobacteria,1RQ2R@1236|Gammaproteobacteria,1X41X@135614|Xanthomonadales 135614|Xanthomonadales M 3-beta hydroxysteroid dehydrogenase cdh1 - 1.1.1.412 ko:K22320 - - - - ko00000,ko01000 - - - 3Beta_HSD SRR25158195_k127_875136_8 391008.Smal_0172 4.34e-19 91.0 COG5487@1|root,COG5487@2|Bacteria,1NGAH@1224|Proteobacteria,1SGD7@1236|Gammaproteobacteria,1X8RN@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1328) - - - - - - - - - - - - DUF1328 SRR25158195_k127_875136_1 522373.Smlt0211 5.57e-215 672.0 COG1181@1|root,COG1181@2|Bacteria,1MUTB@1224|Proteobacteria,1RMTM@1236|Gammaproteobacteria,1X9GF@135614|Xanthomonadales 135614|Xanthomonadales F Belongs to the D-alanine--D-alanine ligase family ddlA - 6.3.2.4 ko:K01921 ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502 - R01150 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Dala_Dala_lig_C,Dala_Dala_lig_N SRR25158195_k127_875136_4 391008.Smal_0174 3.746e-123 396.0 COG3165@1|root,COG3165@2|Bacteria,1N8UE@1224|Proteobacteria,1SE63@1236|Gammaproteobacteria,1X5YU@135614|Xanthomonadales 135614|Xanthomonadales S Sterol-binding protein - - - ko:K03690 - - - - ko00000 - - - SCP2 SRR25158195_k127_875136_0 522373.Smlt0213 0.0 1071.0 COG0661@1|root,COG0661@2|Bacteria,1MU1Z@1224|Proteobacteria,1RNQM@1236|Gammaproteobacteria,1X3E2@135614|Xanthomonadales 135614|Xanthomonadales S Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis ubiB - - ko:K03688 - - - - ko00000 - - - ABC1 SRR25158195_k127_875136_5 391008.Smal_0176 3.202e-92 321.0 COG4122@1|root,COG4122@2|Bacteria,1N57D@1224|Proteobacteria,1S6JT@1236|Gammaproteobacteria,1X9FN@135614|Xanthomonadales 135614|Xanthomonadales S O-methyltransferase - - - - - - - - - - - - Methyltransf_3 SRR25158195_k127_875136_3 391008.Smal_0177 4.362e-154 487.0 COG0564@1|root,COG0564@2|Bacteria,1N8GW@1224|Proteobacteria,1RMZ7@1236|Gammaproteobacteria,1X31W@135614|Xanthomonadales 135614|Xanthomonadales J pseudouridylate synthase truC - 5.4.99.26 ko:K06175 - - - - ko00000,ko01000,ko03016 - - - PseudoU_synth_2 SRR25158195_k127_875136_7 1429851.X548_20050 1.242e-47 171.0 COG3184@1|root,COG3184@2|Bacteria,1NA5V@1224|Proteobacteria,1S3JN@1236|Gammaproteobacteria,1X6TS@135614|Xanthomonadales 135614|Xanthomonadales S Uncharacterized protein conserved in bacteria (DUF2059) - - - ko:K09924 - - - - ko00000 - - - DUF2059 SRR25158195_k127_87711_4 391008.Smal_1100 3.01e-126 404.0 COG3832@1|root,COG3832@2|Bacteria,1RDGX@1224|Proteobacteria,1S4FQ@1236|Gammaproteobacteria,1X4UZ@135614|Xanthomonadales 135614|Xanthomonadales S Polyketide cyclase - - - - - - - - - - - - Polyketide_cyc2 SRR25158195_k127_87711_5 391008.Smal_1099 2.776e-125 402.0 COG2197@1|root,COG2197@2|Bacteria,1RAQG@1224|Proteobacteria,1S31E@1236|Gammaproteobacteria,1X4HP@135614|Xanthomonadales 135614|Xanthomonadales K regulator - - - - - - - - - - - - GerE,Response_reg SRR25158195_k127_87711_0 522373.Smlt1254 2.011e-212 664.0 COG4585@1|root,COG4585@2|Bacteria,1RAKD@1224|Proteobacteria,1S33T@1236|Gammaproteobacteria,1X3EC@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - HisKA_3 SRR25158195_k127_87711_3 522373.Smlt1253 5.742e-127 407.0 COG3818@1|root,COG3818@2|Bacteria,1Q5R3@1224|Proteobacteria,1RWBA@1236|Gammaproteobacteria,1X331@135614|Xanthomonadales 135614|Xanthomonadales S acetyltransferase - - - ko:K06977 - - - - ko00000 - - - Acetyltransf_1,Acetyltransf_10 SRR25158195_k127_87711_2 522373.Smlt1252 1.982e-148 480.0 COG0850@1|root,COG0850@2|Bacteria,1RHVN@1224|Proteobacteria,1S6K8@1236|Gammaproteobacteria,1X5DW@135614|Xanthomonadales 135614|Xanthomonadales D Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization minC - - ko:K03610 - - - - ko00000,ko03036,ko04812 - - - MinC_C,MinC_N SRR25158195_k127_87711_1 59538.XP_005980386.1 4.135e-162 517.0 COG0489@1|root,KOG3022@2759|Eukaryota 2759|Eukaryota D Component of the cytosolic iron-sulfur (Fe S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NBP35-CFD1 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins - GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0010020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030899,GO:0031967,GO:0031975,GO:0042623,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043572,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048285,GO:0071840 - ko:K03609 - - - - ko00000,ko03036,ko04812 - - - AAA_31,CbiA,ParA SRR25158195_k127_87711_7 1429851.X548_04115 2.946e-47 171.0 COG0851@1|root,COG0851@2|Bacteria,1N6QD@1224|Proteobacteria,1SC8W@1236|Gammaproteobacteria,1X7DV@135614|Xanthomonadales 135614|Xanthomonadales D Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell minE - - ko:K03608 - - - - ko00000,ko03036,ko04812 - - - MinE SRR25158195_k127_87711_6 522373.Smlt1249 1.679e-94 316.0 2AEMZ@1|root,314HW@2|Bacteria,1RHE3@1224|Proteobacteria,1S7P7@1236|Gammaproteobacteria,1X6CF@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_877710_0 522373.Smlt3556 8.04e-258 797.0 COG1024@1|root,COG1250@1|root,COG1024@2|Bacteria,COG1250@2|Bacteria,1MU9P@1224|Proteobacteria,1RMZ8@1236|Gammaproteobacteria,1X486@135614|Xanthomonadales 135614|Xanthomonadales I 3-hydroxyacyl-coa dehydrogenase fadJ - 1.1.1.35,4.2.1.17,5.1.2.3 ko:K01782 ko00071,ko00280,ko00281,ko00310,ko00362,ko00380,ko00410,ko00640,ko00650,ko00903,ko00930,ko01040,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00362,map00380,map00410,map00640,map00650,map00903,map00930,map01040,map01100,map01110,map01120,map01130,map01200,map01212 M00032,M00087 R01975,R03026,R03045,R03276,R04137,R04170,R04203,R04204,R04224,R04737,R04738,R04739,R04740,R04741,R04744,R04745,R04746,R04748,R04749,R05066,R05305,R06411,R06412,R06941,R06942,R07935,R07951,R08093,R08094 RC00029,RC00099,RC00117,RC00241,RC00525,RC00831,RC00834,RC00896,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115 ko00000,ko00001,ko00002,ko01000 - - - 3HCDH,3HCDH_N,ECH_1 SRR25158195_k127_877710_1 522373.Smlt3555 9.304e-125 406.0 COG1595@1|root,COG1595@2|Bacteria,1MX7T@1224|Proteobacteria,1RN64@1236|Gammaproteobacteria,1X4CK@135614|Xanthomonadales 135614|Xanthomonadales K Belongs to the sigma-70 factor family. ECF subfamily rpoE - - ko:K03088 - - - - ko00000,ko03021 - - - Sigma70_r2,Sigma70_r4_2 SRR25158195_k127_877710_2 391008.Smal_2980 7.044e-113 374.0 COG5662@1|root,COG5662@2|Bacteria,1NHTQ@1224|Proteobacteria,1T4A7@1236|Gammaproteobacteria,1XD9T@135614|Xanthomonadales 135614|Xanthomonadales K Anti sigma-E protein RseA, N-terminal domain - - - - - - - - - - - - RseA_N SRR25158195_k127_881803_3 391008.Smal_2334 8.305e-07 58.0 COG1574@1|root,COG1574@2|Bacteria,1MWP2@1224|Proteobacteria,1RNB7@1236|Gammaproteobacteria,1X2ZS@135614|Xanthomonadales 135614|Xanthomonadales S Amidohydrolase family - - - - - - - - - - - - Amidohydro_3 SRR25158195_k127_881803_1 522373.Smlt2886 3.968e-69 242.0 COG2259@1|root,COG2259@2|Bacteria,1RDYW@1224|Proteobacteria,1S6UK@1236|Gammaproteobacteria,1XARI@135614|Xanthomonadales 135614|Xanthomonadales S DoxX - - - ko:K15977 - - - - ko00000 - - - DoxX SRR25158195_k127_881803_0 1429851.X548_10435 3.135e-124 404.0 COG1335@1|root,COG1335@2|Bacteria,1MU5N@1224|Proteobacteria,1RPGX@1236|Gammaproteobacteria,1X30M@135614|Xanthomonadales 135614|Xanthomonadales Q Hydrolase - - - - - - - - - - - - Isochorismatase SRR25158195_k127_881803_2 391008.Smal_2337 9.569e-69 235.0 COG2207@1|root,COG2207@2|Bacteria,1RJPK@1224|Proteobacteria,1T277@1236|Gammaproteobacteria,1XD5A@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - ko:K07506 - - - - ko00000,ko03000 - - - HTH_18 SRR25158195_k127_882746_0 1429851.X548_12865 9.951e-291 897.0 COG0621@1|root,COG0621@2|Bacteria,1MU7N@1224|Proteobacteria,1RN46@1236|Gammaproteobacteria,1X3IZ@135614|Xanthomonadales 135614|Xanthomonadales J Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 rimO - 2.8.4.4 ko:K14441 - - R10652 RC00003,RC03217 ko00000,ko01000,ko03009 - - - Radical_SAM,TRAM,UPF0004 SRR25158195_k127_882746_1 391008.Smal_2864 1.158e-127 416.0 28P0I@1|root,2ZBX5@2|Bacteria,1REAW@1224|Proteobacteria,1T03A@1236|Gammaproteobacteria,1X2XG@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF3025) - - - - - - - - - - - - DUF3025 SRR25158195_k127_882746_2 522373.Smlt3436 2.089e-98 324.0 COG0782@1|root,COG0782@2|Bacteria,1RAP0@1224|Proteobacteria,1S40Q@1236|Gammaproteobacteria,1X5XX@135614|Xanthomonadales 135614|Xanthomonadales K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length greB - - ko:K04760 - - - - ko00000,ko03021 - - - GreA_GreB,GreA_GreB_N SRR25158195_k127_882746_3 522373.Smlt3435 1.179e-75 254.0 COG0433@1|root,COG0433@2|Bacteria,1MU59@1224|Proteobacteria,1RPYD@1236|Gammaproteobacteria,1X3CJ@135614|Xanthomonadales 135614|Xanthomonadales S ATP-binding protein - - - ko:K06915 - - - - ko00000 - - - DUF853 SRR25158195_k127_891685_3 522373.Smlt0671 3.957e-48 173.0 COG0454@1|root,COG0456@2|Bacteria,1RIE6@1224|Proteobacteria,1S9G0@1236|Gammaproteobacteria,1X6EJ@135614|Xanthomonadales 135614|Xanthomonadales K Ribosomal-protein-alanine acetyltransferase rimI - 2.3.1.128 ko:K03789 - - - - ko00000,ko01000,ko03009 - - - Acetyltransf_1 SRR25158195_k127_891685_2 522373.Smlt0670 1.718e-59 217.0 2ANZC@1|root,31E0D@2|Bacteria,1QBAF@1224|Proteobacteria,1T6V3@1236|Gammaproteobacteria,1X87T@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_891685_0 391008.Smal_0529 6.29e-158 502.0 COG1183@1|root,COG1183@2|Bacteria,1MWD9@1224|Proteobacteria,1RPBB@1236|Gammaproteobacteria,1X3MH@135614|Xanthomonadales 135614|Xanthomonadales I Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - 2.7.8.8 ko:K17103 ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110 M00093 R01800 RC00002,RC00017,RC02795 ko00000,ko00001,ko00002,ko01000 - - - CDP-OH_P_transf SRR25158195_k127_891685_1 522373.Smlt0668 1.478e-66 229.0 2DR2Y@1|root,339YA@2|Bacteria,1NHB7@1224|Proteobacteria,1SEVB@1236|Gammaproteobacteria,1XCNY@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4124) - - - - - - - - - - - - DUF4124 SRR25158195_k127_894890_0 391008.Smal_2704 1.877e-130 417.0 COG1138@1|root,COG1138@2|Bacteria,1MUQS@1224|Proteobacteria,1RMY5@1236|Gammaproteobacteria,1X4P1@135614|Xanthomonadales 135614|Xanthomonadales O Cytochrome C biogenesis ccmF2 - - ko:K02198 - - - - ko00000,ko02000 9.B.14.1 - - CcmF_C,Cytochrom_C_asm SRR25158195_k127_894890_1 1429851.X548_12005 7.871e-127 406.0 COG0526@1|root,COG0526@2|Bacteria,1RI3N@1224|Proteobacteria,1S5YV@1236|Gammaproteobacteria,1X5YS@135614|Xanthomonadales 135614|Xanthomonadales CO Thiol disulfide interchange protein dsbE - - ko:K02199 - - - - ko00000,ko03110 - - - Redoxin SRR25158195_k127_894890_2 391008.Smal_2706 2.816e-74 252.0 COG3088@1|root,COG3088@2|Bacteria,1MZZ5@1224|Proteobacteria,1S9DV@1236|Gammaproteobacteria,1X6XY@135614|Xanthomonadales 135614|Xanthomonadales P subunit of a heme lyase ccmH2 - - ko:K02200 - - - - ko00000 - - - CcmH SRR25158195_k127_894890_3 391008.Smal_2707 7.476e-54 195.0 COG4235@1|root,COG4235@2|Bacteria,1MY4J@1224|Proteobacteria,1RZEA@1236|Gammaproteobacteria,1X3KB@135614|Xanthomonadales 135614|Xanthomonadales O Cytochrome C biogenesis cycH - - ko:K02200 - - - - ko00000 - - - TPR_16,TPR_19,TPR_2 SRR25158195_k127_901370_1 1429851.X548_00985 1.491e-147 473.0 COG0438@1|root,COG0438@2|Bacteria,1N5HW@1224|Proteobacteria,1RPPH@1236|Gammaproteobacteria,1X68G@135614|Xanthomonadales 135614|Xanthomonadales M Glycosyl transferases group 1 - - - - - - - - - - - - Glycos_transf_1 SRR25158195_k127_901370_0 1429851.X548_00980 4.297e-163 526.0 COG1579@1|root,COG1579@2|Bacteria,1QWI8@1224|Proteobacteria,1T2VV@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Methyltransferase FkbM domain - - - - - - - - - - - - Methyltransf_21 SRR25158195_k127_901370_2 1429851.X548_00975 7.582e-67 230.0 COG1134@1|root,COG1134@2|Bacteria,1MWWC@1224|Proteobacteria,1RN2T@1236|Gammaproteobacteria,1X3C5@135614|Xanthomonadales 135614|Xanthomonadales GM Wzt C-terminal domain - - - ko:K09691 ko02010,map02010 M00250 - - ko00000,ko00001,ko00002,ko02000 3.A.1.103 - - ABC_tran,Wzt_C SRR25158195_k127_903542_1 1429851.X548_00855 2.894e-54 190.0 COG0225@1|root,COG0225@2|Bacteria,1NC84@1224|Proteobacteria,1RYYW@1236|Gammaproteobacteria,1XC4X@135614|Xanthomonadales 135614|Xanthomonadales O Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine - - 1.8.4.11 ko:K07304 - - - - ko00000,ko01000 - - - PMSR SRR25158195_k127_903542_0 391008.Smal_0466 1.263e-292 902.0 COG1167@1|root,COG1167@2|Bacteria,1MV6F@1224|Proteobacteria,1RMQ0@1236|Gammaproteobacteria,1X30H@135614|Xanthomonadales 135614|Xanthomonadales K Transcriptional regulator - - - - - - - - - - - - Aminotran_1_2,GntR SRR25158195_k127_903542_2 522373.Smlt0589 1.94e-28 114.0 COG0132@1|root,COG0132@2|Bacteria,1RDRK@1224|Proteobacteria,1RSHS@1236|Gammaproteobacteria,1X3VC@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring bioD GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.3.3 ko:K01935 ko00780,ko01100,map00780,map01100 M00123,M00573,M00577 R03182 RC00868 ko00000,ko00001,ko00002,ko01000 - - - AAA_26 SRR25158195_k127_923632_1 522373.Smlt0730 8.295e-95 316.0 COG0781@1|root,COG0781@2|Bacteria,1RHFZ@1224|Proteobacteria,1S6AJ@1236|Gammaproteobacteria,1X6GZ@135614|Xanthomonadales 135614|Xanthomonadales K Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons nusB - - ko:K03625 - - - - ko00000,ko03009,ko03021 - - - NusB SRR25158195_k127_923632_2 522373.Smlt0729 1.445e-93 309.0 COG0054@1|root,COG0054@2|Bacteria,1RD9J@1224|Proteobacteria,1S3WD@1236|Gammaproteobacteria,1X6Q2@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin ribH GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 ko:K00794 ko00740,ko01100,ko01110,map00740,map01100,map01110 M00125 R04457 RC00960 ko00000,ko00001,ko00002,ko01000 - - - DMRL_synthase SRR25158195_k127_923632_0 1429851.X548_01450 7.778e-230 714.0 COG0108@1|root,COG0807@1|root,COG0108@2|Bacteria,COG0807@2|Bacteria,1MU8P@1224|Proteobacteria,1RQ49@1236|Gammaproteobacteria,1X31N@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate ribB - 3.5.4.25,4.1.99.12 ko:K14652 ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110 M00125,M00840 R00425,R07281 RC00293,RC01792,RC01815,RC02504 ko00000,ko00001,ko00002,ko01000 - - - DHBP_synthase,GTP_cyclohydro2 SRR25158195_k127_924200_1 391008.Smal_2432 2.379e-64 226.0 COG3153@1|root,COG3153@2|Bacteria,1RA42@1224|Proteobacteria,1S2G0@1236|Gammaproteobacteria,1X6YM@135614|Xanthomonadales 135614|Xanthomonadales S acetyltransferase - - - ko:K03824 - - - - ko00000,ko01000 - - - Acetyltransf_1,Acetyltransf_9 SRR25158195_k127_924200_0 391008.Smal_2453 4.37e-236 740.0 COG0477@1|root,COG2814@2|Bacteria,1MU9G@1224|Proteobacteria,1RM9G@1236|Gammaproteobacteria,1X4AS@135614|Xanthomonadales 135614|Xanthomonadales EGP MFS transporter - - - ko:K19577 - - - - ko00000,ko02000 2.A.1.2.65 - - MFS_1,Sugar_tr SRR25158195_k127_927218_1 522373.Smlt0967 1.741e-249 770.0 COG0034@1|root,COG0034@2|Bacteria,1MU0V@1224|Proteobacteria,1RMYA@1236|Gammaproteobacteria,1X3ZZ@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine purF - 2.4.2.14 ko:K00764 ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 M00048 R01072 RC00010,RC02724,RC02752 ko00000,ko00001,ko00002,ko01000,ko01002 - - - GATase_6,Pribosyltran SRR25158195_k127_927218_2 1429851.X548_02630 2.533e-168 532.0 COG2833@1|root,COG2833@2|Bacteria,1MW0V@1224|Proteobacteria,1RNGA@1236|Gammaproteobacteria,1X4VY@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria - - - - - - - - - - - - DUF455 SRR25158195_k127_927218_0 391008.Smal_0814 3.409e-263 816.0 COG4104@1|root,COG4104@2|Bacteria,1N6WE@1224|Proteobacteria,1RR6E@1236|Gammaproteobacteria 1236|Gammaproteobacteria S Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - - - - - - - - - - DUF2235,PAAR_motif SRR25158195_k127_927218_3 1429851.X548_02640 1.113e-133 431.0 COG3291@1|root,COG3291@2|Bacteria,1R7JK@1224|Proteobacteria,1S0UR@1236|Gammaproteobacteria,1X476@135614|Xanthomonadales 135614|Xanthomonadales S Metalloprotease, specifically cleaves on the N-terminal side of aspartyl, glutamyl and cysteic acid residues - - - - - - - - - - - - Reprolysin_5 SRR25158195_k127_928731_1 1123504.JQKD01000008_gene5342 1.57e-89 298.0 COG1063@1|root,COG1063@2|Bacteria,1MW7C@1224|Proteobacteria,2VN30@28216|Betaproteobacteria,4AHH9@80864|Comamonadaceae 28216|Betaproteobacteria E COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - - - - - - - - - - - - - SRR25158195_k127_928731_2 1123504.JQKD01000008_gene5343 1.616e-61 216.0 COG0720@1|root,COG0720@2|Bacteria,1RI8E@1224|Proteobacteria,2VTBS@28216|Betaproteobacteria,4AHWE@80864|Comamonadaceae 28216|Betaproteobacteria H 6-pyruvoyl tetrahydropterin synthase - - - - - - - - - - - - PTPS SRR25158195_k127_928731_0 1123504.JQKD01000008_gene5344 4.276e-125 411.0 COG0438@1|root,COG0438@2|Bacteria,1P81Z@1224|Proteobacteria,2VQRF@28216|Betaproteobacteria,4AJ0Z@80864|Comamonadaceae 28216|Betaproteobacteria M Glycosyltransferase Family 4 - - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 SRR25158195_k127_928731_3 1123504.JQKD01000008_gene5345 5.634e-50 186.0 COG2890@1|root,COG2890@2|Bacteria,1RHJW@1224|Proteobacteria 1224|Proteobacteria J protein-(glutamine-N5) methyltransferase activity - - - - - - - - - - - - Methyltransf_25 SRR25158195_k127_932786_5 1385515.N791_01120 3.579e-43 159.0 COG1589@1|root,COG1589@2|Bacteria,1N0T7@1224|Proteobacteria,1S9FJ@1236|Gammaproteobacteria,1X5H6@135614|Xanthomonadales 135614|Xanthomonadales D Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly ftsQ - - ko:K03589 ko04112,map04112 - - - ko00000,ko00001,ko03036 - - - FtsQ,POTRA_1 SRR25158195_k127_932786_3 391008.Smal_0604 3.822e-196 614.0 COG1181@1|root,COG1181@2|Bacteria,1MUTB@1224|Proteobacteria,1RMTM@1236|Gammaproteobacteria,1X46K@135614|Xanthomonadales 135614|Xanthomonadales F Belongs to the D-alanine--D-alanine ligase family ddl - 6.3.2.4 ko:K01921 ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502 - R01150 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Dala_Dala_lig_C,Dala_Dala_lig_N SRR25158195_k127_932786_0 522373.Smlt0756 4.616e-299 922.0 COG0773@1|root,COG0773@2|Bacteria,1MV68@1224|Proteobacteria,1RN88@1236|Gammaproteobacteria,1X3C1@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the MurCDEF family murC - 6.3.2.8 ko:K01924 ko00471,ko00550,ko01100,map00471,map00550,map01100 - R03193 RC00064,RC00141 ko00000,ko00001,ko01000,ko01011 - - - Mur_ligase,Mur_ligase_C,Mur_ligase_M SRR25158195_k127_932786_2 391008.Smal_0602 7.467e-209 675.0 COG0707@1|root,COG0707@2|Bacteria,1MVIB@1224|Proteobacteria,1RMQ3@1236|Gammaproteobacteria,1X3JZ@135614|Xanthomonadales 135614|Xanthomonadales M Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) murG - 2.4.1.227 ko:K02563 ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112 - R05032,R05662 RC00005,RC00049 ko00000,ko00001,ko01000,ko01011 - GT28 - Glyco_tran_28_C,Glyco_transf_28 SRR25158195_k127_932786_1 522373.Smlt0754 1.587e-252 789.0 COG0772@1|root,COG0772@2|Bacteria,1MVDB@1224|Proteobacteria,1RMIV@1236|Gammaproteobacteria,1X3GX@135614|Xanthomonadales 135614|Xanthomonadales M Peptidoglycan polymerase that is essential for cell division ftsW - - ko:K03588 ko04112,map04112 - - - ko00000,ko00001,ko02000,ko03036 2.A.103.1 - - FTSW_RODA_SPOVE SRR25158195_k127_932786_4 391008.Smal_0600 1.393e-164 518.0 COG0472@1|root,COG0472@2|Bacteria,1MUTK@1224|Proteobacteria,1RNIG@1236|Gammaproteobacteria,1X3Y2@135614|Xanthomonadales 135614|Xanthomonadales M First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan mraY - 2.7.8.13 ko:K01000 ko00550,ko01100,ko01502,map00550,map01100,map01502 - R05629,R05630 RC00002,RC02753 ko00000,ko00001,ko01000,ko01011 9.B.146 - - Glycos_transf_4,MraY_sig1 SRR25158195_k127_934676_1 1429851.X548_19270 8.919e-217 679.0 COG3401@1|root,COG3401@2|Bacteria,1R4JU@1224|Proteobacteria,1SKUD@1236|Gammaproteobacteria,1X5MH@135614|Xanthomonadales 135614|Xanthomonadales S Concanavalin A-like lectin/glucanases superfamily - - - - - - - - - - - - Laminin_G_3 SRR25158195_k127_934676_0 1429851.X548_19265 0.0 1673.0 COG1629@1|root,COG1629@2|Bacteria,1MV8W@1224|Proteobacteria,1RMQA@1236|Gammaproteobacteria,1X400@135614|Xanthomonadales 135614|Xanthomonadales P receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_934676_2 1429851.X548_19260 2.561e-189 595.0 COG0524@1|root,COG0524@2|Bacteria,1QNWF@1224|Proteobacteria,1RRZR@1236|Gammaproteobacteria,1X41I@135614|Xanthomonadales 135614|Xanthomonadales G pfkB family carbohydrate kinase kdgK - 2.7.1.45 ko:K00874 ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200 M00061,M00308,M00631 R01541 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - PfkB SRR25158195_k127_934676_3 1234364.AMSF01000025_gene3739 3.769e-67 235.0 COG0800@1|root,COG0800@2|Bacteria,1MUVJ@1224|Proteobacteria,1RPDF@1236|Gammaproteobacteria,1X4EU@135614|Xanthomonadales 135614|Xanthomonadales G Aldolase - - 4.1.2.14,4.1.3.42 ko:K01625 ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200 M00008,M00061,M00308,M00631 R00470,R05605 RC00307,RC00308,RC00435 ko00000,ko00001,ko00002,ko01000 - - - Aldolase SRR25158195_k127_934676_4 1429851.X548_19240 1.557e-63 221.0 COG1064@1|root,COG1064@2|Bacteria,1MUTT@1224|Proteobacteria,1RPQC@1236|Gammaproteobacteria,1X4TA@135614|Xanthomonadales 135614|Xanthomonadales S alcohol dehydrogenase - - 1.1.1.1 ko:K13953 ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220 - R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310 RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273 ko00000,ko00001,ko01000 - - - ADH_N,ADH_zinc_N SRR25158195_k127_935725_0 522373.Smlt2728 5.166e-105 344.0 COG2831@1|root,COG2831@2|Bacteria,1PRBP@1224|Proteobacteria,1RZKA@1236|Gammaproteobacteria,1X4MG@135614|Xanthomonadales 135614|Xanthomonadales U Haemolysin secretion/activation protein ShlB/FhaC/HecB - - - - - - - - - - - - POTRA_2,ShlB SRR25158195_k127_935725_3 391008.Smal_2201 1.296e-41 155.0 2EPKH@1|root,33H73@2|Bacteria,1N77H@1224|Proteobacteria,1ST72@1236|Gammaproteobacteria,1XBH0@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_935725_1 1429851.X548_09760 2.132e-62 218.0 2DDHM@1|root,2ZI4R@2|Bacteria,1P4AY@1224|Proteobacteria 1224|Proteobacteria - - - - - ko:K02452 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - - SRR25158195_k127_935725_2 522373.Smlt2731 2.732e-49 178.0 COG4970@1|root,COG4970@2|Bacteria,1RE8J@1224|Proteobacteria,1T2XJ@1236|Gammaproteobacteria,1X8MC@135614|Xanthomonadales 135614|Xanthomonadales NU General secretion pathway protein h xcsH - - ko:K02457 ko03070,ko05111,map03070,map05111 M00331 - - ko00000,ko00001,ko00002,ko02044 3.A.15 - - GspH,N_methyl SRR25158195_k127_941483_1 1163409.UUA_13415 4.188e-155 499.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MV8W@1224|Proteobacteria,1RMQA@1236|Gammaproteobacteria,1X5F3@135614|Xanthomonadales 135614|Xanthomonadales P Outer membrane receptor proteins mostly Fe transport - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_941483_0 1163409.UUA_13420 2.91e-156 501.0 COG3693@1|root,COG3693@2|Bacteria,1QWFB@1224|Proteobacteria,1T45W@1236|Gammaproteobacteria 1236|Gammaproteobacteria G Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - - - - - - - - - - Cellulase SRR25158195_k127_941483_2 1163409.UUA_13425 4.981e-155 497.0 COG2017@1|root,COG2017@2|Bacteria,1MVMN@1224|Proteobacteria,1RNZN@1236|Gammaproteobacteria,1X4ZA@135614|Xanthomonadales 135614|Xanthomonadales G Converts alpha-aldose to the beta-anomer galM - 5.1.3.3 ko:K01785 ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130 M00632 R01602,R10619 RC00563 ko00000,ko00001,ko00002,ko01000 - - - Aldose_epim SRR25158195_k127_941483_5 1500894.JQNN01000001_gene516 2.849e-48 184.0 COG3734@1|root,COG3734@2|Bacteria,1MWGX@1224|Proteobacteria,2VH7M@28216|Betaproteobacteria,478PT@75682|Oxalobacteraceae 28216|Betaproteobacteria G 2-keto-3-deoxy-galactonokinase dgoK - 2.7.1.58 ko:K00883 ko00052,ko01100,map00052,map01100 M00552 R03387 RC00002,RC00017 ko00000,ko00001,ko00002,ko01000 - - - DGOK SRR25158195_k127_941483_3 1112216.JH594426_gene3755 2.029e-148 477.0 COG3940@1|root,COG3940@2|Bacteria,1PDX5@1224|Proteobacteria,2VF38@28211|Alphaproteobacteria,2KDVF@204457|Sphingomonadales 204457|Sphingomonadales G Glycosyl hydrolases family 43 - - - - - - - - - - - - Glyco_hydro_43 SRR25158195_k127_941483_4 391008.Smal_2054 2.471e-92 305.0 2DWJF@1|root,340NC@2|Bacteria,1NYAU@1224|Proteobacteria 1224|Proteobacteria - - - - - - - - - - - - - - - SRR25158195_k127_942021_0 522373.Smlt3583 0.0 1214.0 COG0753@1|root,COG0753@2|Bacteria,1MUXZ@1224|Proteobacteria,1RNE7@1236|Gammaproteobacteria,1X490@135614|Xanthomonadales 135614|Xanthomonadales P Serves to protect cells from the toxic effects of hydrogen peroxide katE - 1.11.1.6 ko:K03781 ko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014 M00532 R00009,R00602,R02670 RC00034,RC00767,RC02141,RC02755 ko00000,ko00001,ko00002,ko01000 - - - Catalase,Catalase-rel,DJ-1_PfpI SRR25158195_k127_942021_2 522373.Smlt3584 9.153e-39 151.0 COG3668@1|root,32ZH9@2|Bacteria,1N7YH@1224|Proteobacteria,1SF6S@1236|Gammaproteobacteria,1X87P@135614|Xanthomonadales 135614|Xanthomonadales S COG3668 Plasmid stabilization system protein - - - - - - - - - - - - - SRR25158195_k127_942021_1 1118235.CAJH01000018_gene1017 3.206e-54 195.0 2ANXH@1|root,31DY8@2|Bacteria,1P2SM@1224|Proteobacteria,1SSW0@1236|Gammaproteobacteria,1X832@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_951627_2 1123256.KB907926_gene694 4.377e-07 55.0 COG0608@1|root,COG0608@2|Bacteria,1MU1M@1224|Proteobacteria,1RMF4@1236|Gammaproteobacteria,1X3EZ@135614|Xanthomonadales 135614|Xanthomonadales L Single-stranded-DNA-specific exonuclease recJ - - ko:K07462 ko03410,ko03430,ko03440,map03410,map03430,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DHH,DHHA1 SRR25158195_k127_951627_1 396588.Tgr7_0978 1.706e-54 196.0 COG0782@1|root,COG0782@2|Bacteria,1RCXW@1224|Proteobacteria,1S3UP@1236|Gammaproteobacteria,1WY5U@135613|Chromatiales 135613|Chromatiales K Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides greA - - ko:K03624 - - - - ko00000,ko03021 - - - GreA_GreB,GreA_GreB_N SRR25158195_k127_951627_0 1163409.UUA_09256 0.0 1262.0 COG0458@1|root,COG0458@2|Bacteria,1MUDZ@1224|Proteobacteria,1RPIU@1236|Gammaproteobacteria,1X3MZ@135614|Xanthomonadales 135614|Xanthomonadales F Four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate carB GO:0000050,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.5.5 ko:K01955 ko00240,ko00250,ko01100,map00240,map00250,map01100 M00051 R00256,R00575,R01395,R10948,R10949 RC00002,RC00010,RC00043,RC02750,RC02798,RC03314 ko00000,ko00001,ko00002,ko01000 - - - CPSase_L_D2,CPSase_L_D3,MGS SRR25158195_k127_952398_4 522373.Smlt4689 3.785e-50 178.0 COG0705@1|root,COG0705@2|Bacteria,1RJYI@1224|Proteobacteria,1S0FR@1236|Gammaproteobacteria,1X419@135614|Xanthomonadales 135614|Xanthomonadales S (Rhomboid) family - - - - - - - - - - - - Rhomboid SRR25158195_k127_952398_3 522373.Smlt4690 4.889e-220 688.0 COG0584@1|root,COG0584@2|Bacteria,1MVWZ@1224|Proteobacteria,1RRBP@1236|Gammaproteobacteria,1X39F@135614|Xanthomonadales 135614|Xanthomonadales C glycerophosphoryl diester phosphodiesterase glpQ - 3.1.4.46 ko:K01126 ko00564,map00564 - R01030,R01470 RC00017,RC00425 ko00000,ko00001,ko01000 - - - GDPD SRR25158195_k127_952398_2 522373.Smlt4691 4.135e-268 827.0 COG0486@1|root,COG0486@2|Bacteria,1MUCQ@1224|Proteobacteria,1RN5S@1236|Gammaproteobacteria,1X3DW@135614|Xanthomonadales 135614|Xanthomonadales J Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 mnmE - - ko:K03650 - - R08701 RC00053,RC00209,RC00870 ko00000,ko01000,ko03016 - - - MMR_HSR1,MnmE_helical,TrmE_N SRR25158195_k127_952398_0 522373.Smlt4692 0.0 1719.0 COG0457@1|root,COG0726@1|root,COG4249@1|root,COG0457@2|Bacteria,COG0726@2|Bacteria,COG4249@2|Bacteria,1PJQG@1224|Proteobacteria,1SZ7J@1236|Gammaproteobacteria,1XCU5@135614|Xanthomonadales 135614|Xanthomonadales G Caspase domain - - - - - - - - - - - - Peptidase_C14,Polysacc_deac_1,TPR_2,TPR_8 SRR25158195_k127_952398_1 522373.Smlt4693 0.0 1030.0 COG0706@1|root,COG0706@2|Bacteria,1MV5M@1224|Proteobacteria,1RMH1@1236|Gammaproteobacteria,1X497@135614|Xanthomonadales 135614|Xanthomonadales U Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins yidC - - ko:K03217 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044,ko03029 2.A.9 - - 60KD_IMP,YidC_periplas SRR25158195_k127_952399_8 522373.Smlt4251 6.83e-92 303.0 COG2267@1|root,COG2267@2|Bacteria,1MWF5@1224|Proteobacteria,1RNQR@1236|Gammaproteobacteria,1X5NM@135614|Xanthomonadales 135614|Xanthomonadales I Putative methyltransferase - - - - - - - - - - - - Hydrolase_4,Methyltransf_20 SRR25158195_k127_952399_7 1429851.X548_17055 3.393e-96 344.0 COG0558@1|root,COG0558@2|Bacteria,1RE0I@1224|Proteobacteria,1S2UQ@1236|Gammaproteobacteria,1X6BD@135614|Xanthomonadales 135614|Xanthomonadales I CDP-alcohol phosphatidyltransferase - - 2.7.8.5 ko:K00995 ko00564,ko01100,map00564,map01100 - R01801 RC00002,RC00017,RC02795 ko00000,ko00001,ko01000 - - - CDP-OH_P_transf SRR25158195_k127_952399_9 391008.Smal_3662 1.105e-28 129.0 COG0138@1|root,COG0138@2|Bacteria,1MUDQ@1224|Proteobacteria,1RMWS@1236|Gammaproteobacteria,1X3IH@135614|Xanthomonadales 135614|Xanthomonadales F Bifunctional purine biosynthesis protein PurH purH - 2.1.2.3,3.5.4.10 ko:K00602 ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523 M00048 R01127,R04560 RC00026,RC00263,RC00456 ko00000,ko00001,ko00002,ko01000,ko04147 - - - AICARFT_IMPCHas,MGS SRR25158195_k127_952399_0 1429851.X548_17060 6.884e-286 879.0 COG0138@1|root,COG0138@2|Bacteria,1MUDQ@1224|Proteobacteria,1RMWS@1236|Gammaproteobacteria,1X3IH@135614|Xanthomonadales 135614|Xanthomonadales F Bifunctional purine biosynthesis protein PurH purH - 2.1.2.3,3.5.4.10 ko:K00602 ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523 M00048 R01127,R04560 RC00026,RC00263,RC00456 ko00000,ko00001,ko00002,ko01000,ko04147 - - - AICARFT_IMPCHas,MGS SRR25158195_k127_952399_1 522373.Smlt4254 7.122e-261 808.0 COG0151@1|root,COG0151@2|Bacteria,1MUAH@1224|Proteobacteria,1RNS4@1236|Gammaproteobacteria,1X46W@135614|Xanthomonadales 135614|Xanthomonadales F Belongs to the GARS family purD - 6.3.4.13 ko:K01945 ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130 M00048 R04144 RC00090,RC00166 ko00000,ko00001,ko00002,ko01000 - - - GARS_A,GARS_C,GARS_N SRR25158195_k127_952399_3 391008.Smal_3666 5.823e-179 562.0 COG0568@1|root,COG0568@2|Bacteria,1MVWR@1224|Proteobacteria,1RMFR@1236|Gammaproteobacteria,1X3U9@135614|Xanthomonadales 135614|Xanthomonadales K RNA polymerase sigma factor RpoH rpoH - - ko:K03089 - - - - ko00000,ko03021 - - - Sigma70_r1_2,Sigma70_r2,Sigma70_r4 SRR25158195_k127_952399_5 522373.Smlt4259 3.515e-152 482.0 COG0692@1|root,COG0692@2|Bacteria,1MV80@1224|Proteobacteria,1RPDH@1236|Gammaproteobacteria,1X376@135614|Xanthomonadales 135614|Xanthomonadales L Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine ung GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097510,GO:0140097,GO:1901360 3.2.2.27 ko:K03648 ko03410,ko05340,map03410,map05340 - - - ko00000,ko00001,ko01000,ko03400 - - - UDG SRR25158195_k127_952399_4 522373.Smlt4260 3.493e-173 548.0 COG0784@1|root,COG0784@2|Bacteria,1NEBU@1224|Proteobacteria,1RYA6@1236|Gammaproteobacteria,1X3DN@135614|Xanthomonadales 135614|Xanthomonadales T response regulator - - - - - - - - - - - - Response_reg SRR25158195_k127_952399_2 522373.Smlt4261 3.901e-192 601.0 COG2177@1|root,COG2177@2|Bacteria,1MU65@1224|Proteobacteria,1RYBV@1236|Gammaproteobacteria,1X3UJ@135614|Xanthomonadales 135614|Xanthomonadales D Part of the ABC transporter FtsEX involved in cellular division ftsX - - ko:K09811 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - FtsX SRR25158195_k127_952399_6 522373.Smlt4262 8.266e-134 427.0 COG2884@1|root,COG2884@2|Bacteria,1MVQ4@1224|Proteobacteria,1RMZA@1236|Gammaproteobacteria,1X4HD@135614|Xanthomonadales 135614|Xanthomonadales D cell division ATP-binding protein FtsE ftsE - - ko:K09812 ko02010,map02010 M00256 - - ko00000,ko00001,ko00002,ko02000,ko03036 3.A.1.140 - - ABC_tran SRR25158195_k127_95436_1 391008.Smal_1429 4.195e-116 374.0 COG0635@1|root,COG0635@2|Bacteria,1MV1I@1224|Proteobacteria,1RN1Y@1236|Gammaproteobacteria,1X4K3@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - - - - - - - - - - HemN_C,Radical_SAM SRR25158195_k127_95436_2 391008.Smal_1430 2.377e-75 256.0 COG3431@1|root,COG3431@2|Bacteria,1N6PE@1224|Proteobacteria,1SE25@1236|Gammaproteobacteria,1X7VJ@135614|Xanthomonadales 135614|Xanthomonadales S BLUF domain - - - - - - - - - - - - BLUF SRR25158195_k127_95436_0 522373.Smlt1692 3.581e-187 588.0 COG0677@1|root,COG0677@2|Bacteria,1MUC6@1224|Proteobacteria,1RMX0@1236|Gammaproteobacteria,1X3V0@135614|Xanthomonadales 135614|Xanthomonadales M Belongs to the UDP-glucose GDP-mannose dehydrogenase family vipA - - ko:K02474 ko00520,map00520 - R06894 RC00291 ko00000,ko00001,ko01000,ko01005 - - - UDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N SRR25158195_k127_959587_4 935863.AWZR01000002_gene1096 5.827e-38 146.0 COG1801@1|root,COG1801@2|Bacteria,1MU7F@1224|Proteobacteria,1RSAG@1236|Gammaproteobacteria,1X3RA@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function DUF72 - - - - - - - - - - - - DUF72 SRR25158195_k127_959587_1 522373.Smlt2533 1.022e-128 415.0 COG0266@1|root,COG0266@2|Bacteria,1NR8T@1224|Proteobacteria,1SKSW@1236|Gammaproteobacteria,1X3P4@135614|Xanthomonadales 135614|Xanthomonadales L formamidopyrimidine-DNA glycosylase - - 4.2.99.18 ko:K05522 ko03410,map03410 - - - ko00000,ko00001,ko01000,ko03400 - - - Fapy_DNA_glyco,H2TH SRR25158195_k127_959587_5 522373.Smlt2524 6.143e-31 128.0 COG4095@1|root,COG4095@2|Bacteria,1NFJU@1224|Proteobacteria,1SUYM@1236|Gammaproteobacteria,1X869@135614|Xanthomonadales 135614|Xanthomonadales S Psort location CytoplasmicMembrane, score - - - - - - - - - - - - MtN3_slv,PQ-loop SRR25158195_k127_959587_2 522373.Smlt2532 1.429e-94 311.0 COG3685@1|root,COG3685@2|Bacteria,1REKN@1224|Proteobacteria,1S45E@1236|Gammaproteobacteria,1X5Y4@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF892) - - - - - - - - - - - - DUF892 SRR25158195_k127_959587_3 391008.Smal_3555 1.073e-82 276.0 COG1633@1|root,COG1633@2|Bacteria,1N5Q3@1224|Proteobacteria,1S8TA@1236|Gammaproteobacteria,1X6Q0@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF2383) - - - - - - - - - - - - DUF2383 SRR25158195_k127_959587_0 391008.Smal_3549 0.0 1197.0 COG1404@1|root,COG4625@1|root,COG1404@2|Bacteria,COG4625@2|Bacteria,1MVY7@1224|Proteobacteria,1SYQI@1236|Gammaproteobacteria,1XCU2@135614|Xanthomonadales 135614|Xanthomonadales O Autotransporter beta-domain - - - ko:K12685 - - - - ko00000,ko01000,ko02000,ko02044 1.B.12.5.1,1.B.12.5.3 - - Autotransporter,Peptidase_S8 SRR25158195_k127_969036_4 1429851.X548_05395 8.541e-234 724.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X3DG@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the aldehyde dehydrogenase family - - 1.2.1.39,1.2.1.99 ko:K00146,ko:K09472 ko00330,ko00360,ko00643,ko01100,ko01120,map00330,map00360,map00643,map01100,map01120 M00136 R02536,R07417,R07418 RC00080 ko00000,ko00001,ko00002,ko01000 - - - Aldedh SRR25158195_k127_969036_1 391008.Smal_1332 9.907e-265 818.0 COG0477@1|root,COG0477@2|Bacteria,1MU46@1224|Proteobacteria,1RMF0@1236|Gammaproteobacteria,1X3W2@135614|Xanthomonadales 135614|Xanthomonadales EGP Major facilitator superfamily yhjE - - - - - - - - - - - MFS_1,Sugar_tr SRR25158195_k127_969036_8 522373.Smlt1574 7.97e-96 315.0 COG2703@1|root,COG2703@2|Bacteria,1RI40@1224|Proteobacteria,1S60H@1236|Gammaproteobacteria,1X5YE@135614|Xanthomonadales 135614|Xanthomonadales P Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms - - - ko:K07216 - - - - ko00000 - - - Hemerythrin SRR25158195_k127_969036_0 391008.Smal_1334 3.853e-285 878.0 COG0745@1|root,COG2199@1|root,COG0745@2|Bacteria,COG3706@2|Bacteria,1MXBG@1224|Proteobacteria,1RNJA@1236|Gammaproteobacteria,1X4QB@135614|Xanthomonadales 135614|Xanthomonadales T Diguanylate cyclase rrpX - - - - - - - - - - - GGDEF,Response_reg SRR25158195_k127_969036_9 1429851.X548_05425 1.35e-48 179.0 2C1IC@1|root,344WN@2|Bacteria,1P2UK@1224|Proteobacteria,1SRZ8@1236|Gammaproteobacteria,1XBSB@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_969036_5 1429851.X548_05430 1.177e-197 630.0 COG3851@1|root,COG3851@2|Bacteria,1QUAD@1224|Proteobacteria,1RMGY@1236|Gammaproteobacteria,1X5HP@135614|Xanthomonadales 135614|Xanthomonadales T Signal transduction histidine kinase, glucose-6-phosphate specific - - - - - - - - - - - - MASE1 SRR25158195_k127_969036_2 522373.Smlt1577 3.402e-255 796.0 COG3851@1|root,COG3851@2|Bacteria,1NTGE@1224|Proteobacteria,1T8D4@1236|Gammaproteobacteria,1XAGN@135614|Xanthomonadales 135614|Xanthomonadales T conserved protein - - - - - - - - - - - - MASE1 SRR25158195_k127_969036_3 391008.Smal_1338 5.318e-253 788.0 COG0665@1|root,COG0665@2|Bacteria,1MVGP@1224|Proteobacteria,1RNJ9@1236|Gammaproteobacteria,1X30K@135614|Xanthomonadales 135614|Xanthomonadales E Oxidoreductase - - - ko:K09471 ko00330,ko01100,map00330,map01100 M00136 R07415 RC00062 ko00000,ko00001,ko00002,ko01000 - - - DAO SRR25158195_k127_969036_7 391008.Smal_1339 3.221e-154 488.0 COG2071@1|root,COG2071@2|Bacteria,1MV8E@1224|Proteobacteria,1RS51@1236|Gammaproteobacteria,1X58W@135614|Xanthomonadales 135614|Xanthomonadales S Glutamine - - - ko:K07010 - - - - ko00000,ko01002 - - - Peptidase_C26 SRR25158195_k127_969036_6 522373.Smlt1580 5.733e-194 609.0 COG0174@1|root,COG0174@2|Bacteria,1MU6V@1224|Proteobacteria,1RPNZ@1236|Gammaproteobacteria,1X5PI@135614|Xanthomonadales 135614|Xanthomonadales E Belongs to the glutamine synthetase family glnA2 - 6.3.1.2 ko:K01915 ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727 - R00253 RC00010,RC02798 ko00000,ko00001,ko01000,ko04147 - - - Gln-synt_C SRR25158195_k127_971498_5 391008.Smal_3854 4.258e-22 97.0 COG1199@1|root,COG1199@2|Bacteria,1MVCU@1224|Proteobacteria,1RMNX@1236|Gammaproteobacteria,1X5GN@135614|Xanthomonadales 135614|Xanthomonadales KL DNA helicase dinG - 3.6.4.12 ko:K03722 - - - - ko00000,ko01000,ko03400 - - - Helicase_C_2,ResIII SRR25158195_k127_971498_0 391008.Smal_3856 1.148e-172 544.0 COG0169@1|root,COG0169@2|Bacteria,1MVH4@1224|Proteobacteria,1RPB7@1236|Gammaproteobacteria,1X3RB@135614|Xanthomonadales 135614|Xanthomonadales E Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) aroE GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 ko:K00014 ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230 M00022 R02413 RC00206 ko00000,ko00001,ko00002,ko01000 - - - Shikimate_DH,Shikimate_dh_N SRR25158195_k127_971498_1 522373.Smlt4495A 1.288e-141 479.0 COG0823@1|root,COG0823@2|Bacteria,1MZ1T@1224|Proteobacteria,1RMNE@1236|Gammaproteobacteria,1X6J1@135614|Xanthomonadales 135614|Xanthomonadales U WD40-like Beta Propeller Repeat - - - - - - - - - - - - PD40 SRR25158195_k127_971498_2 1429851.X548_18145 2.459e-137 437.0 COG0113@1|root,COG0113@2|Bacteria,1MWMW@1224|Proteobacteria,1RP6Q@1236|Gammaproteobacteria,1X3RV@135614|Xanthomonadales 135614|Xanthomonadales H Belongs to the ALAD family hemB - 4.2.1.24 ko:K01698 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R00036 RC00918,RC01781 ko00000,ko00001,ko00002,ko01000,ko04147 - - - ALAD SRR25158195_k127_972173_2 391008.Smal_1735 7.513e-27 113.0 COG0784@1|root,COG0784@2|Bacteria,1NPHQ@1224|Proteobacteria,1SV8D@1236|Gammaproteobacteria,1X8Y5@135614|Xanthomonadales 135614|Xanthomonadales T response regulator - - - - - - - - - - - - Response_reg SRR25158195_k127_972173_0 391008.Smal_1736 3.752e-196 617.0 COG4191@1|root,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,1RP53@1236|Gammaproteobacteria,1X596@135614|Xanthomonadales 135614|Xanthomonadales T His Kinase A (phosphoacceptor) domain - - - - - - - - - - - - HATPase_c,HisKA,PAS_4,PAS_9 SRR25158195_k127_972173_1 522373.Smlt2141 1.05e-40 154.0 COG0642@1|root,COG0745@1|root,COG2199@1|root,COG2203@1|root,COG0745@2|Bacteria,COG2203@2|Bacteria,COG2205@2|Bacteria,COG3706@2|Bacteria,1NRP8@1224|Proteobacteria,1SKTW@1236|Gammaproteobacteria,1X50H@135614|Xanthomonadales 135614|Xanthomonadales T Histidine kinase - - - - - - - - - - - - GAF_2,HATPase_c,HisKA,Response_reg SRR25158195_k127_973513_0 522373.Smlt0165 3.147e-250 777.0 COG3071@1|root,COG3071@2|Bacteria,1MU7A@1224|Proteobacteria,1RMRG@1236|Gammaproteobacteria,1X5JZ@135614|Xanthomonadales 135614|Xanthomonadales H porphyrin biosynthesis protein hemY - - ko:K02498 - - - - ko00000 - - - HemY_N SRR25158195_k127_973513_1 522373.Smlt0166 1.396e-171 543.0 COG2959@1|root,COG2959@2|Bacteria,1PBXG@1224|Proteobacteria,1RV27@1236|Gammaproteobacteria,1X66Q@135614|Xanthomonadales 135614|Xanthomonadales H HemX, putative uroporphyrinogen-III C-methyltransferase - - 2.1.1.107 ko:K02496 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R03194 RC00003,RC00871 ko00000,ko00001,ko00002,ko01000 - - - HemX SRR25158195_k127_973513_2 391008.Smal_0131 3.197e-118 387.0 COG1587@1|root,COG1587@2|Bacteria,1PBXH@1224|Proteobacteria,1RV28@1236|Gammaproteobacteria,1X6RF@135614|Xanthomonadales 135614|Xanthomonadales H Uroporphyrinogen-III synthase hemD - 4.2.1.75 ko:K01719 ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120 M00121 R03165 RC01861 ko00000,ko00001,ko00002,ko01000 - - - HEM4 SRR25158195_k127_973513_3 1429851.X548_19810 1.954e-49 181.0 COG2050@1|root,COG2050@2|Bacteria,1QU0P@1224|Proteobacteria,1T1K4@1236|Gammaproteobacteria,1X7E3@135614|Xanthomonadales 135614|Xanthomonadales Q thioesterase - - - - - - - - - - - - YiiD_C SRR25158195_k127_975324_3 1429851.X548_03360 6.541e-09 62.0 COG1493@1|root,COG1493@2|Bacteria,1NNN5@1224|Proteobacteria,1S2K0@1236|Gammaproteobacteria,1X321@135614|Xanthomonadales 135614|Xanthomonadales F Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) hprK GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - ko:K06023 - - - - ko00000,ko01000 - - - Hpr_kinase_C,Hpr_kinase_N SRR25158195_k127_975324_1 1429851.X548_03365 2.368e-83 278.0 COG1762@1|root,COG1762@2|Bacteria,1RD0E@1224|Proteobacteria,1S668@1236|Gammaproteobacteria,1XCMT@135614|Xanthomonadales 135614|Xanthomonadales GT Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 - - - ko:K02806 ko02060,map02060 - - - ko00000,ko00001,ko01000,ko02000 - - - PTS_EIIA_2 SRR25158195_k127_975324_2 1429851.X548_03370 4.249e-62 215.0 COG1544@1|root,COG1544@2|Bacteria,1MZHW@1224|Proteobacteria,1S8U1@1236|Gammaproteobacteria,1X7QA@135614|Xanthomonadales 135614|Xanthomonadales J modulation protein raiA - - ko:K05808 - - - - ko00000,ko03009 - - - Ribosomal_S30AE SRR25158195_k127_975324_0 522373.Smlt1112 3.054e-261 810.0 COG1508@1|root,COG1508@2|Bacteria,1MW4V@1224|Proteobacteria,1RMY0@1236|Gammaproteobacteria,1X3TH@135614|Xanthomonadales 135614|Xanthomonadales K Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released rpoN - - ko:K03092 ko02020,ko05111,map02020,map05111 - - - ko00000,ko00001,ko03021 - - - Sigma54_AID,Sigma54_CBD,Sigma54_DBD SRR25158195_k127_977128_0 522373.Smlt4194 5e-324 992.0 COG1198@1|root,COG1198@2|Bacteria,1MUUZ@1224|Proteobacteria,1RPZ7@1236|Gammaproteobacteria,1X381@135614|Xanthomonadales 135614|Xanthomonadales L Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA priA - - ko:K04066 ko03440,map03440 - - - ko00000,ko00001,ko01000,ko03400 - - - DEAD,Helicase_C,ResIII SRR25158195_k127_977128_5 391008.Smal_3602 4.306e-129 415.0 COG0625@1|root,COG0625@2|Bacteria,1RA4M@1224|Proteobacteria,1S2K3@1236|Gammaproteobacteria,1X9KM@135614|Xanthomonadales 135614|Xanthomonadales O glutathione s-transferase - - 2.5.1.18 ko:K00799 ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418 - R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905 RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944 ko00000,ko00001,ko01000,ko02000 1.A.12.2.2,1.A.12.3.2 - - GST_C,GST_C_2,GST_N,GST_N_3 SRR25158195_k127_977128_3 1429851.X548_16805 6.106e-149 477.0 COG1432@1|root,COG1432@2|Bacteria,1MX5C@1224|Proteobacteria,1RSP8@1236|Gammaproteobacteria,1X40Y@135614|Xanthomonadales 135614|Xanthomonadales S OST-HTH/LOTUS domain - - - - - - - - - - - - NYN,OST-HTH SRR25158195_k127_977128_1 522373.Smlt4197 2.587e-272 839.0 COG1252@1|root,COG1252@2|Bacteria,1MX96@1224|Proteobacteria,1RM9I@1236|Gammaproteobacteria,1X3HK@135614|Xanthomonadales 135614|Xanthomonadales C NADH dehydrogenase, FAD-containing subunit ndh - 1.6.99.3 ko:K03885 ko00190,map00190 - - - ko00000,ko00001,ko01000 - - - Pyr_redox_2 SRR25158195_k127_977128_6 522373.Smlt4201 3.396e-46 171.0 COG2827@1|root,COG2827@2|Bacteria,1N6PA@1224|Proteobacteria,1SCBH@1236|Gammaproteobacteria,1X86F@135614|Xanthomonadales 135614|Xanthomonadales L endonuclease containing a URI domain - - - ko:K07461 - - - - ko00000 - - - GIY-YIG SRR25158195_k127_977128_4 522373.Smlt4202 1.063e-130 418.0 COG2860@1|root,COG2860@2|Bacteria,1R9H8@1224|Proteobacteria,1S00T@1236|Gammaproteobacteria,1XC1C@135614|Xanthomonadales 135614|Xanthomonadales S UPF0126 domain - - - - - - - - - - - - UPF0126 SRR25158195_k127_977128_2 522373.Smlt4203 1.752e-224 709.0 COG0722@1|root,COG0722@2|Bacteria,1MU5Q@1224|Proteobacteria,1RMAA@1236|Gammaproteobacteria,1X34Q@135614|Xanthomonadales 135614|Xanthomonadales E Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) aroG - 2.5.1.54 ko:K01626 ko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024 M00022 R01826 RC00435 ko00000,ko00001,ko00002,ko01000 - - - DAHP_synth_1 SRR25158195_k127_982066_2 1131451.O1K_00275 1.884e-24 109.0 COG3523@1|root,COG3523@2|Bacteria,1MV3D@1224|Proteobacteria,1RPQ2@1236|Gammaproteobacteria,1X9RA@135614|Xanthomonadales 135614|Xanthomonadales S Type VI secretion protein IcmF C-terminal - - - ko:K11891 ko02025,ko03070,map02025,map03070 M00334 - - ko00000,ko00001,ko00002,ko02044 3.A.23.1 - - IcmF-related,IcmF_C,ImcF-related_N SRR25158195_k127_982066_0 360094.PXO_04695 3.496e-73 265.0 COG0304@1|root,COG0304@2|Bacteria,1N4Y1@1224|Proteobacteria,1SQ12@1236|Gammaproteobacteria,1XAQK@135614|Xanthomonadales 135614|Xanthomonadales IQ beta-ketoacyl-acyl-carrier-protein synthase II activity - - - - - - - - - - - - - SRR25158195_k127_982066_1 360094.PXO_05511 7.968e-32 125.0 COG4104@1|root,COG4104@2|Bacteria,1N6T7@1224|Proteobacteria,1SDI3@1236|Gammaproteobacteria,1XB8I@135614|Xanthomonadales 135614|Xanthomonadales S PAAR motif - - - - - - - - - - - - PAAR_motif SRR25158195_k127_982809_2 1211114.ALIP01000083_gene1542 6.7e-42 156.0 COG3695@1|root,COG3695@2|Bacteria,1N7J2@1224|Proteobacteria,1SCIZ@1236|Gammaproteobacteria,1X7VA@135614|Xanthomonadales 135614|Xanthomonadales L Cysteine methyltransferase - - - ko:K07443 - - - - ko00000 - - - DNA_binding_1 SRR25158195_k127_982809_1 913325.N799_05785 2.826e-108 354.0 COG0705@1|root,COG0705@2|Bacteria,1RD88@1224|Proteobacteria,1S5NF@1236|Gammaproteobacteria,1X4YW@135614|Xanthomonadales 135614|Xanthomonadales S membrane - - - - - - - - - - - - Rhomboid SRR25158195_k127_982809_0 1385517.N800_10420 2.977e-165 524.0 COG3590@1|root,COG3590@2|Bacteria,1MVNQ@1224|Proteobacteria,1RNNA@1236|Gammaproteobacteria,1X4B6@135614|Xanthomonadales 135614|Xanthomonadales O peptidase - - - ko:K07386 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M13,Peptidase_M13_N SRR25158195_k127_988393_3 365046.Rta_26450 9.119e-21 92.0 COG0149@1|root,COG0149@2|Bacteria,1MWK5@1224|Proteobacteria,2VIRP@28216|Betaproteobacteria,4ABH1@80864|Comamonadaceae 28216|Betaproteobacteria G Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) tpiA - 5.3.1.1 ko:K01803 ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230 M00001,M00002,M00003 R01015 RC00423 ko00000,ko00001,ko00002,ko01000,ko04147 - - - TIM SRR25158195_k127_988393_2 365046.Rta_26440 1.462e-45 168.0 COG1314@1|root,COG1314@2|Bacteria,1N8MF@1224|Proteobacteria,2VU0P@28216|Betaproteobacteria,4AEHQ@80864|Comamonadaceae 28216|Betaproteobacteria U PFAM Preprotein translocase SecG subunit secG - - ko:K03075 ko02024,ko03060,ko03070,map02024,map03060,map03070 M00335 - - ko00000,ko00001,ko00002,ko02044 3.A.5.1,3.A.5.2 - - SecG SRR25158195_k127_988393_1 365046.Rta_26430 1.104e-64 223.0 COG0838@1|root,COG0838@2|Bacteria,1RGUT@1224|Proteobacteria,2VSI3@28216|Betaproteobacteria,4AE1G@80864|Comamonadaceae 28216|Betaproteobacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoA - 1.6.5.3 ko:K00330 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q4 SRR25158195_k127_988393_0 365046.Rta_26420 9.693e-103 336.0 COG0377@1|root,COG0377@2|Bacteria,1MUI2@1224|Proteobacteria,2VIWK@28216|Betaproteobacteria,4ACEJ@80864|Comamonadaceae 28216|Betaproteobacteria C NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient nuoB - 1.6.5.3 ko:K00331 ko00190,ko01100,map00190,map01100 M00144 R11945 RC00061 ko00000,ko00001,ko00002,ko01000 3.D.1 - - Oxidored_q6 SRR25158195_k127_989154_4 391008.Smal_0166 2.094e-55 194.0 2CEDU@1|root,333S9@2|Bacteria,1NCM4@1224|Proteobacteria,1SDI0@1236|Gammaproteobacteria,1X7T5@135614|Xanthomonadales 135614|Xanthomonadales S Domain of unknown function (DUF4156) - - - - - - - - - - - - DUF4156 SRR25158195_k127_989154_1 391008.Smal_0167 4.159e-215 668.0 COG0332@1|root,COG0332@2|Bacteria,1P9I2@1224|Proteobacteria,1S3GP@1236|Gammaproteobacteria,1X388@135614|Xanthomonadales 135614|Xanthomonadales I synthase - - - ko:K22317 - - - - ko00000 - - - ACP_syn_III,ACP_syn_III_C SRR25158195_k127_989154_2 1429851.X548_19995 3.555e-196 613.0 COG0596@1|root,COG0596@2|Bacteria,1MUSF@1224|Proteobacteria,1RZNC@1236|Gammaproteobacteria,1XD64@135614|Xanthomonadales 135614|Xanthomonadales S Alpha beta - - - ko:K22318 - - - - ko00000 - - - Abhydrolase_1 SRR25158195_k127_989154_3 522373.Smlt0207 3.871e-93 312.0 COG0727@1|root,COG0727@2|Bacteria,1N027@1224|Proteobacteria,1S949@1236|Gammaproteobacteria,1X6GI@135614|Xanthomonadales 135614|Xanthomonadales S Putative zinc- or iron-chelating domain - - - ko:K06940 - - - - ko00000 - - - CxxCxxCC SRR25158195_k127_989154_0 522373.Smlt0208 4.781e-261 809.0 COG0318@1|root,COG0318@2|Bacteria,1R5I6@1224|Proteobacteria,1RNFC@1236|Gammaproteobacteria,1X52P@135614|Xanthomonadales 135614|Xanthomonadales IQ Peptide synthase - - 6.1.3.1 ko:K22319 - - - - ko00000,ko01000 - - - AMP-binding SRR25158195_k127_994761_4 366649.XFF4834R_chr11810 5.719e-48 183.0 COG3307@1|root,COG3307@2|Bacteria,1N2FC@1224|Proteobacteria,1SA03@1236|Gammaproteobacteria,1X4DW@135614|Xanthomonadales 135614|Xanthomonadales M membrane waaL - - - - - - - - - - - Wzy_C SRR25158195_k127_994761_1 522373.Smlt3933 1.263e-220 689.0 COG0438@1|root,COG0438@2|Bacteria,1MUTA@1224|Proteobacteria,1RS31@1236|Gammaproteobacteria,1X41U@135614|Xanthomonadales 135614|Xanthomonadales M Glycosyl transferase waaG - - - - - - - - - - - Glyco_transf_4,Glycos_transf_1 SRR25158195_k127_994761_5 522373.Smlt3934 1.939e-35 137.0 COG4391@1|root,COG4391@2|Bacteria,1N7QM@1224|Proteobacteria,1SHHF@1236|Gammaproteobacteria,1X821@135614|Xanthomonadales 135614|Xanthomonadales S protein conserved in bacteria VL23_05015 - - - - - - - - - - - zf-CHCC SRR25158195_k127_994761_2 360094.PXO_03827 1.873e-198 651.0 COG1629@1|root,COG1629@2|Bacteria,COG4771@2|Bacteria,1MU9K@1224|Proteobacteria,1RMTG@1236|Gammaproteobacteria,1X4HX@135614|Xanthomonadales 135614|Xanthomonadales P TonB-dependent receptor - - - - - - - - - - - - Plug,TonB_dep_Rec SRR25158195_k127_994761_6 522373.Smlt3935 3.453e-11 64.0 COG3537@1|root,COG3537@2|Bacteria,1N86N@1224|Proteobacteria,1RZCC@1236|Gammaproteobacteria,1X4Z0@135614|Xanthomonadales 135614|Xanthomonadales G Glycosyl hydrolase family 92 - - - - - - - - - - - - Glyco_hydro_92 SRR25158195_k127_994761_0 391008.Smal_3350 0.0 2056.0 COG3537@1|root,COG3537@2|Bacteria,1N86N@1224|Proteobacteria,1RZCC@1236|Gammaproteobacteria,1X4Z0@135614|Xanthomonadales 135614|Xanthomonadales G Glycosyl hydrolase family 92 - - - - - - - - - - - - Glyco_hydro_92 SRR25158195_k127_994761_3 1429851.X548_15405 5.961e-87 290.0 28N64@1|root,31Q3F@2|Bacteria,1NNPN@1224|Proteobacteria,1SHTM@1236|Gammaproteobacteria,1XAE7@135614|Xanthomonadales 135614|Xanthomonadales S Peptidase of plants and bacteria - - - - - - - - - - - - BSP SRR25158195_k127_996490_0 391008.Smal_3880 1.882e-182 573.0 COG1131@1|root,COG1131@2|Bacteria,1MUW7@1224|Proteobacteria,1RMC5@1236|Gammaproteobacteria,1X31S@135614|Xanthomonadales 135614|Xanthomonadales V ABC transporter - - - ko:K01990 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC_tran,DUF4162 SRR25158195_k127_996490_2 391008.Smal_3881 2.666e-160 507.0 COG0842@1|root,COG0842@2|Bacteria,1MUH1@1224|Proteobacteria,1RP0Z@1236|Gammaproteobacteria,1X38I@135614|Xanthomonadales 135614|Xanthomonadales V Transport permease protein yadH - - ko:K01992 - M00254 - - ko00000,ko00002,ko02000 3.A.1 - - ABC2_membrane SRR25158195_k127_996490_1 1429851.X548_18255 3.759e-171 543.0 COG1893@1|root,COG1893@2|Bacteria,1MX5M@1224|Proteobacteria,1S8X5@1236|Gammaproteobacteria,1X4U7@135614|Xanthomonadales 135614|Xanthomonadales H Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid apbA - 1.1.1.169 ko:K00077 ko00770,ko01100,ko01110,map00770,map01100,map01110 M00119 R02472 RC00726 ko00000,ko00001,ko00002,ko01000 - - - ApbA,ApbA_C SRR25158195_k127_997679_7 1442599.JAAN01000044_gene2886 9.012e-49 175.0 COG3182@1|root,COG3182@2|Bacteria,1R59B@1224|Proteobacteria,1S0MV@1236|Gammaproteobacteria,1XA11@135614|Xanthomonadales 135614|Xanthomonadales S PepSY-associated TM region - - - - - - - - - - - - PepSY_TM SRR25158195_k127_997679_1 1442599.JAAN01000044_gene2885 1.125e-243 767.0 COG2871@1|root,COG3182@1|root,COG2871@2|Bacteria,COG3182@2|Bacteria,1QTUV@1224|Proteobacteria,1RPG5@1236|Gammaproteobacteria,1X6HX@135614|Xanthomonadales 135614|Xanthomonadales C Oxidoreductase FAD-binding domain - - - - - - - - - - - - FAD_binding_6,Fer2,NAD_binding_1,PepSY_TM SRR25158195_k127_997679_2 391008.Smal_3495 5.582e-236 731.0 COG0031@1|root,COG0031@2|Bacteria,1MUR6@1224|Proteobacteria,1RMS1@1236|Gammaproteobacteria,1X435@135614|Xanthomonadales 135614|Xanthomonadales E cysteine synthase cysM - 2.5.1.47 ko:K01738 ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230 M00021 R00897,R03601,R04859 RC00020,RC02814,RC02821 ko00000,ko00001,ko00002,ko01000 - - - PALP SRR25158195_k127_997679_6 522373.Smlt4094 3.724e-64 221.0 295GT@1|root,2ZSUE@2|Bacteria,1PBNC@1224|Proteobacteria,1SUNQ@1236|Gammaproteobacteria,1XBFH@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_997679_8 522373.Smlt4094 1.671e-06 55.0 295GT@1|root,2ZSUE@2|Bacteria,1PBNC@1224|Proteobacteria,1SUNQ@1236|Gammaproteobacteria,1XBFH@135614|Xanthomonadales 135614|Xanthomonadales - - - - - - - - - - - - - - - SRR25158195_k127_997679_0 1429851.X548_16120 0.0 1306.0 COG0339@1|root,COG0339@2|Bacteria,1MU1K@1224|Proteobacteria,1RMAH@1236|Gammaproteobacteria,1X55W@135614|Xanthomonadales 135614|Xanthomonadales E Peptidase family M3 prlC - 3.4.24.70 ko:K01414 - - - - ko00000,ko01000,ko01002 - - - Peptidase_M3 SRR25158195_k127_997679_4 391008.Smal_3492 7.078e-147 475.0 COG1028@1|root,COG1028@2|Bacteria,1MUAY@1224|Proteobacteria,1S1XJ@1236|Gammaproteobacteria,1X4DQ@135614|Xanthomonadales 135614|Xanthomonadales IQ short-chain dehydrogenase reductase - - - - - - - - - - - - adh_short_C2 SRR25158195_k127_997679_5 1429851.X548_16110 3.217e-107 366.0 COG3310@1|root,COG3310@2|Bacteria,1RDE0@1224|Proteobacteria,1S3X6@1236|Gammaproteobacteria,1XC92@135614|Xanthomonadales 135614|Xanthomonadales S Protein of unknown function (DUF1415) - - - ko:K09941 - - - - ko00000 - - - DUF1415 SRR25158195_k127_997679_3 391008.Smal_3490 1.206e-221 698.0 COG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,1RMBQ@1236|Gammaproteobacteria,1X5H3@135614|Xanthomonadales 135614|Xanthomonadales C Belongs to the aldehyde dehydrogenase family xylC - 1.2.1.28,1.2.1.3 ko:K00128,ko:K00141 ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00622,ko00623,ko00625,ko00627,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00622,map00623,map00625,map00627,map00903,map00981,map01100,map01110,map01120,map01130,map01220 M00135,M00537,M00538 R00264,R00631,R00710,R00904,R01293,R01419,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R05289,R05663,R05664,R06366,R07667,R08146 RC00047,RC00071,RC00075,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500 ko00000,ko00001,ko00002,ko01000 - - - Aldedh ## 3442 queries scanned ## Total time (seconds): 4.64277982711792 ## Rate: 741.37 q/s