GWM

Global Wetland Microbiome Database

Overview

Taxonomy
ID	MAG00987
Name	DYD3_bin.66
Sample	SMP0027 119.24861137.814167
Kingdom	Bacteria
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Woeseiales
Family	Woeseiaceae
Genus	JAKEGN01
Species	JAKEGN01 sp035457045
Assembly information
Completeness (%)	80.42
Contamination (%)	4.23
GC content (%)	61.0
N50 (bp)	5,181
Genome size (bp)	2,786,287

Location

Module

Module ID	Module name	Total genes	Total steps	Contain genes	Contain steps	Percentage of genes	Percentage of steps

Genes2750

Gene name	Description	KEGG	GOs	EC	E-value	Score
DYD3_k127_1000910_0	Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily	K00121	-	1.1.1.1,1.1.1.284	4.464e-201	630.0
DYD3_k127_1000910_1	Prephenate dehydrogenase chorismate mutase	K00210	-	1.3.1.12	0.0000000000000000000000000000000000000000000000000000000000000000000000000000008205	268.0
DYD3_k127_1000910_2	Protein of unknown function, DUF484	-	-	-	0.000000000000000000000000000000000000000000000000000000000009386	218.0
DYD3_k127_1000910_3	Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP)	K00275	-	1.4.3.5	0.00000000000000000000000000000000000000000003373	170.0
DYD3_k127_1000910_4	Amidohydrolase family	-	-	-	0.00000000000000000000000000000000000001776	165.0
DYD3_k127_1000910_5	Prephenate dehydrogenase chorismate mutase	K00210	-	1.3.1.12	0.000000000000000000000000000000000247	138.0
DYD3_k127_1000910_7	amidohydrolase	-	-	-	0.000000366	63.0
DYD3_k127_1003487_0	malic enzyme	K00027,K00029	-	1.1.1.38,1.1.1.40	8.807e-301	940.0
DYD3_k127_1003487_1	Dehydrogenase	K00117	-	1.1.5.2	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599	525.0
DYD3_k127_1003487_2	Membrane dipeptidase (Peptidase family M19)	K01273	-	3.4.13.19	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003676	305.0
DYD3_k127_1003487_3	Dehydrogenase	K00117	-	1.1.5.2	0.000000000000000000000000000000000000000000006119	172.0
DYD3_k127_1003487_4	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	0.00000000001227	70.0
DYD3_k127_1003956_0	PFAM ABC transporter	K06158	-	-	2.766e-220	694.0
DYD3_k127_1003956_1	COG0457 FOG TPR repeat	-	-	-	0.000006976	50.0
DYD3_k127_1004456_0	COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs	K07303	-	1.3.99.16	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187	404.0
DYD3_k127_1004456_1	Glycosyltransferase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104	392.0
DYD3_k127_1004456_2	Acid phosphatase homologues	K19302	-	3.6.1.27	0.0000000000000000000000000006551	117.0
DYD3_k127_1004568_0	Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP	K03593	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008864	444.0
DYD3_k127_1004568_1	Belongs to the dCTP deaminase family	K01494	-	3.5.4.13	0.000000000000000000000000000000004035	132.0
DYD3_k127_1006412_0	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone	K03168	-	5.99.1.2	0.0	1024.0
DYD3_k127_1006412_1	Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX	K00228	GO:0003674,GO:0003824,GO:0004109,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0030145,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046906,GO:0046914,GO:0046983,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576	1.3.3.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008997	464.0
DYD3_k127_1006412_2	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-) CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate	K07566	-	2.7.7.87	0.00000000000000000000000000000000000000000002485	167.0
DYD3_k127_10078_0	Protein of unknown function, DUF255	K06888	-	-	9.052e-252	794.0
DYD3_k127_10078_1	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	K00560	-	2.1.1.45	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446	444.0
DYD3_k127_10078_2	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	K13292	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008669	347.0
DYD3_k127_10078_3	FAD binding domain	K00486	-	1.14.13.9	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419	310.0
DYD3_k127_10078_4	Peptidase family M23	-	-	-	0.0000000000000000000000000000000000000000000000000000000004535	214.0
DYD3_k127_10078_5	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis	K00287	-	1.5.1.3	0.0000000000000000000000000000000000000000000000002407	180.0
DYD3_k127_10078_6	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain	-	-	-	0.0000006466	52.0
DYD3_k127_1013715_0	cellulose binding	-	-	-	9.565e-200	628.0
DYD3_k127_1013715_1	ThiF family	K21147	-	2.7.7.80,2.8.1.11	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032	464.0
DYD3_k127_1013715_2	COG0790 FOG TPR repeat, SEL1 subfamily	K07126	-	-	0.00000000000000000000000000000000000249	147.0
DYD3_k127_1013715_3	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily	-	-	-	0.000000000000000000000000000001346	127.0
DYD3_k127_1013715_4	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin	-	-	-	0.000000000000000000000000000002837	125.0
DYD3_k127_1026064_0	Aminoglycoside phosphotransferase	-	-	-	0.0000000000000000000000000001502	120.0
DYD3_k127_1026064_1	Signal transduction histidine kinase	-	-	-	0.00000000005476	74.0
DYD3_k127_1038813_0	TonB dependent receptor	K02014	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009561	340.0
DYD3_k127_1038813_1	Protein of unknown function (DUF1211)	-	-	-	0.000000000000000000000000000000001059	136.0
DYD3_k127_1045359_0	Thiamine pyrophosphate enzyme, central domain	K01652	-	2.2.1.6	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639	606.0
DYD3_k127_1045359_1	protein conserved in bacteria	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001025	295.0
DYD3_k127_1045359_2	Amidase	-	-	-	0.000000000000006193	77.0
DYD3_k127_10500_0	Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide	K01739	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.5.1.48	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965	503.0
DYD3_k127_10500_1	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine	K00641	-	2.3.1.31	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004522	421.0
DYD3_k127_10500_2	protein, YerC YecD	-	-	-	0.0000000000000000000000000007319	115.0
DYD3_k127_10500_3	Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate	K00052	GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.85	0.0000000000004933	70.0
DYD3_k127_1052470_0	Transcriptional regulator	K06714,K07713	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002898	434.0
DYD3_k127_1052470_1	PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C	K07259	-	3.4.16.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000002127	280.0
DYD3_k127_1052470_2	Phospholipase/Carboxylesterase	K01061	-	3.1.1.45	0.000000000000000000000000000000000000000000000000000000000002601	213.0
DYD3_k127_1052470_3	Integral membrane protein TerC family	-	-	-	0.000000000000002489	79.0
DYD3_k127_1052807_0	3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002354	373.0
DYD3_k127_1052807_1	Glucose / Sorbosone dehydrogenase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007137	369.0
DYD3_k127_1052807_2	-	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000007124	271.0
DYD3_k127_1052807_3	Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase	-	-	-	0.00000000000000000000000000000000000000001015	162.0
DYD3_k127_1066173_0	Belongs to the NadC ModD family	K00767	GO:0003674,GO:0003824,GO:0004514,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016054,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034213,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0042737,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0072526,GO:0090407,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605	2.4.2.19	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007546	323.0
DYD3_k127_1066173_1	Urate oxidase N-terminal	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000001021	230.0
DYD3_k127_1066173_2	Diguanylate cyclase	-	-	-	0.00000000000000000000000000000000000000000000000001068	182.0
DYD3_k127_1105366_0	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP	K01939	GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	6.3.4.4	2.552e-205	647.0
DYD3_k127_1105366_1	Calx-beta domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002399	398.0
DYD3_k127_1105366_2	HflC and HflK could regulate a protease	K04087	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005625	291.0
DYD3_k127_1105366_3	HflC and HflK could encode or regulate a protease	K04088	-	-	0.000000000000000000000000000000000003927	141.0
DYD3_k127_1105366_4	protein conserved in bacteria	K09937	-	-	0.0000000001906	64.0
DYD3_k127_1108314_0	Polysaccharide deacetylase	K01452	-	3.5.1.41	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003215	503.0
DYD3_k127_1108314_1	Urate oxidase N-terminal	-	-	-	0.0000000000000000000000000000000000000000000000000000003068	198.0
DYD3_k127_1108314_2	OHCU decarboxylase	-	-	-	0.000000000000000000000001261	111.0
DYD3_k127_1112984_0	S-adenosylmethionine uptake transporter	-	-	-	0.000000000000000000000000000000000000000000000000000001208	204.0
DYD3_k127_1112984_1	-	-	-	-	0.0000000000000000000000004429	114.0
DYD3_k127_1112984_2	Transferrin receptor-like dimerisation domain	K01301	-	3.4.17.21	0.000000009679	57.0
DYD3_k127_1126693_0	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site	K03723	-	-	1.419e-298	929.0
DYD3_k127_1129092_0	phosphorylase	K03784	GO:0003674,GO:0003824,GO:0004731,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0034641,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:1901360	2.4.2.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007176	312.0
DYD3_k127_1129092_1	with different specificities (related to short-chain alcohol	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000004681	241.0
DYD3_k127_1129092_2	DeoC/LacD family aldolase	K01619	-	4.1.2.4	0.0000000000000000000000000000000000000000000000000000000000000001937	226.0
DYD3_k127_1129092_3	Cupin domain	-	-	-	0.000000000000000000000000000004623	123.0
DYD3_k127_1130235_0	2-methylcitrate dehydratase	K01720	-	4.2.1.79	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115	392.0
DYD3_k127_1130235_1	Specifically methylates the N7 position of guanine in position 527 of 16S rRNA	K03501	-	2.1.1.170	0.00000000000000000000000000000000000000000000001786	177.0
DYD3_k127_1173199_0	Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family	K03308	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085	302.0
DYD3_k127_1173199_1	May be involved in recombinational repair of damaged DNA	K03631	-	-	0.000000000000000000000000000000000000000000000000000000000003624	214.0
DYD3_k127_1173199_2	Belongs to the Fur family	K03711	-	-	0.0000000000000000000000000000000000000000000000000000000003289	206.0
DYD3_k127_1173199_3	Polyketide cyclase dehydrase and lipid transport	-	-	-	0.000000000000000000000000000000000000006265	154.0
DYD3_k127_1173199_4	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	K06186	-	-	0.000000000000000004952	88.0
DYD3_k127_1173199_5	Belongs to the UPF0125 (RnfH) family	K09801	-	-	0.00000000000000002497	86.0
DYD3_k127_117909_0	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	K07277	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005946	497.0
DYD3_k127_117909_1	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	K02536	-	2.3.1.191	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169	335.0
DYD3_k127_117909_2	Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	K00677	-	2.3.1.129	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008061	323.0
DYD3_k127_117909_3	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	K00748	-	2.4.1.182	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000203	288.0
DYD3_k127_117909_4	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs	K02372	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0008693,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019171,GO:0019752,GO:0032787,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0047451,GO:0071704,GO:0072330,GO:1901576	4.2.1.59	0.00000000000000000000000000000000000000000000000001132	183.0
DYD3_k127_117909_5	Belongs to the skp family	K06142	-	-	0.0000000000000000000000000000002412	131.0
DYD3_k127_1185582_0	Vitamin B12 dependent methionine synthase, activation	K00548	-	2.1.1.13	0.0	1212.0
DYD3_k127_1185582_1	Thioesterase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000001035	249.0
DYD3_k127_1199058_0	EamA-like transporter family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000004316	252.0
DYD3_k127_1199058_1	involved in chromosome partitioning	K03496	-	-	0.00000000000000000000000000000000000000000000000000000000000000000001784	241.0
DYD3_k127_1222501_0	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	-	-	-	0.00000000000000000000000000000000000000000000000000000007348	208.0
DYD3_k127_1222501_1	Biopolymer transport protein ExbD/TolR	-	-	-	0.00000000000000000000000000000000000000000001445	167.0
DYD3_k127_1222501_2	Biopolymer transport protein ExbD/TolR	-	-	-	0.000000000000000000000000000000001144	134.0
DYD3_k127_1222501_3	Protein of unknown function (DUF3612)	-	-	-	0.0000000557	56.0
DYD3_k127_1225698_0	Alpha beta hydrolase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006193	306.0
DYD3_k127_1225698_1	DinB family	-	-	-	0.0000000000000000000000000000000000000000000000000001419	190.0
DYD3_k127_1225698_2	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide	-	-	-	0.000000000002317	70.0
DYD3_k127_1233114_0	Beta-lactamase	-	-	-	1.668e-202	642.0
DYD3_k127_1233114_1	Belongs to the small heat shock protein (HSP20) family	K13993	-	-	0.000000000000000000000009013	108.0
DYD3_k127_1233114_2	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids	K01775	-	5.1.1.1	0.000000000000000003852	86.0
DYD3_k127_1233114_3	Universal stress protein family	-	-	-	0.0000917	51.0
DYD3_k127_1235863_0	Diguanylate cyclase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005625	507.0
DYD3_k127_1238829_0	PEP-utilising enzyme, mobile domain	K01007	-	2.7.9.2	2.962e-273	857.0
DYD3_k127_1238829_1	Conserved carboxylase domain	K01571	-	4.1.1.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981	595.0
DYD3_k127_1238829_2	Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate	K01007	-	2.7.9.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546	344.0
DYD3_k127_1238829_3	Aminomethyltransferase folate-binding domain	K15066	-	2.1.1.341	0.0000000000000000000000000000000000000000000000000000000000000000000000000002003	260.0
DYD3_k127_1238829_4	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coa	K02160	-	-	0.00000000000000000000000000001069	129.0
DYD3_k127_1241799_0	COG1680 Beta-lactamase class C and other penicillin binding proteins	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093	557.0
DYD3_k127_1241799_1	COG0665 Glycine D-amino acid oxidases (deaminating)	K09471	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0044424,GO:0044464,GO:0055114	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075	535.0
DYD3_k127_1241799_2	PFAM amidohydrolase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000597	535.0
DYD3_k127_1241799_3	Type I phosphodiesterase / nucleotide pyrophosphatase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000003749	257.0
DYD3_k127_1269343_0	Amidohydrolase family	-	-	-	4.645e-251	788.0
DYD3_k127_1269343_1	Amino acid permease	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006773	536.0
DYD3_k127_1269343_2	Na+/Pi-cotransporter	K03324	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004951	363.0
DYD3_k127_1269343_3	Hemerythrin HHE cation binding domain	-	-	-	0.0000000000000000000000009824	113.0
DYD3_k127_1269343_4	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis	K01056	GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101	3.1.1.29	0.00000000168	59.0
DYD3_k127_1269343_5	-	-	-	-	0.00002196	47.0
DYD3_k127_1269649_0	Bacterial extracellular solute-binding proteins, family 5 Middle	K15580	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007736	410.0
DYD3_k127_127439_0	modulator of DNA gyrase	K03592	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007551	486.0
DYD3_k127_127439_1	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)	K01589	-	6.3.4.18	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522	353.0
DYD3_k127_127439_2	Type II secretory pathway component ExeA	K02450,K12283	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301	307.0
DYD3_k127_127439_3	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)	K01588	-	5.4.99.18	0.00000000000000000000000000000000000000000000000000000000000000002651	231.0
DYD3_k127_127439_4	Belongs to the UPF0307 family	K09889	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	0.000000000000000000003901	99.0
DYD3_k127_1315280_0	Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen	K00525	-	1.17.4.1	0.0	1129.0
DYD3_k127_1315280_1	COG1519 3-deoxy-D-manno-octulosonic-acid transferase	K02527	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016740,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505	418.0
DYD3_k127_1315280_2	Belongs to the peptidase S1C family	K04771,K04772	-	3.4.21.107	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191	411.0
DYD3_k127_1315280_3	COG0209 Ribonucleotide reductase, alpha subunit	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000378	296.0
DYD3_k127_1315280_4	type I secretion outer membrane protein, TolC	K12340	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008466	292.0
DYD3_k127_1315280_5	Belongs to the small heat shock protein (HSP20) family	K13993	-	-	0.000000000000000000000000000000000000000003043	162.0
DYD3_k127_1320995_0	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	K03695	-	-	0.0	1372.0
DYD3_k127_1320995_1	Responsible for synthesis of pseudouridine from uracil	K06180	-	5.4.99.23	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004232	370.0
DYD3_k127_1320995_2	Belongs to the multicopper oxidase YfiH RL5 family	K05810	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000001197	267.0
DYD3_k127_1320995_3	Protein of unknown function (DUF502)	-	-	-	0.00000000000000000000000000003313	121.0
DYD3_k127_1320995_4	Regulatory protein, FmdB family	-	-	-	0.0000000000000000000000002527	111.0
DYD3_k127_1332705_0	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	K00566	GO:0001510,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004808,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016782,GO:0016783,GO:0030488,GO:0032259,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.8.1.13	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006866	380.0
DYD3_k127_1332705_1	A domain family that is part of the cupin metalloenzyme superfamily.	K18850	-	1.14.11.47	0.000000000000000000000000000000000000000000000000000000009162	211.0
DYD3_k127_1332705_2	Belongs to the Nudix hydrolase family. NudJ subfamily	-	-	-	0.00000000000000000000000000001601	123.0
DYD3_k127_1332705_3	protein acetylation	-	-	-	0.0000000000000000000002115	103.0
DYD3_k127_1340229_0	COG0739 Membrane proteins related to metalloendopeptidases	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009632	297.0
DYD3_k127_1340229_1	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane	K03070	-	-	0.00000000000000000000000000000000000000000002145	163.0
DYD3_k127_1346467_0	cysteine protease	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219	366.0
DYD3_k127_1346467_1	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain	K06978	-	-	0.00000000000000000000000000000000000000000000000000001962	197.0
DYD3_k127_1419296_0	xanthine dehydrogenase a b hammerhead	K11177	-	1.17.1.4	8.178e-218	701.0
DYD3_k127_1419296_1	PFAM Molybdopterin dehydrogenase, FAD-binding	K11178	-	1.17.1.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004989	415.0
DYD3_k127_1419296_2	2Fe-2S -binding	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000001908	227.0
DYD3_k127_1419296_3	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	K08738	-	-	0.0000000000000000000000000000000000327	136.0
DYD3_k127_1427213_0	receptor	K16087	-	-	0.00000000000000000000000000000000000000000000000000000000000000000005242	249.0
DYD3_k127_1427213_1	Protein-glutamate methylesterase	K13924	-	2.1.1.80,3.1.1.61	0.0000000000000000000000000000001047	132.0
DYD3_k127_1427213_2	Invasion gene expression up-regulator	-	-	-	0.000000000000000000000000003293	120.0
DYD3_k127_1432050_0	Oligopeptidase F	K08602	-	-	1.039e-240	760.0
DYD3_k127_1432050_1	peptidase M48, Ste24p	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001344	294.0
DYD3_k127_1432050_2	Family of unknown function (DUF5329)	-	-	-	0.0000000000000000003308	96.0
DYD3_k127_1456559_0	Tetratricopeptide repeat	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006934	341.0
DYD3_k127_1456559_1	COG0457 FOG TPR repeat	-	-	-	0.000000000000000002185	92.0
DYD3_k127_1494055_0	PFAM Lytic	K08309	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478	380.0
DYD3_k127_1494055_1	aminopeptidase	-	-	-	0.000001289	52.0
DYD3_k127_1518781_0	ABC-2 family transporter protein	K01992	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134	388.0
DYD3_k127_1518781_1	PFAM ABC transporter	K01990	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209	393.0
DYD3_k127_1518781_2	HlyD family secretion protein	K01993	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000004622	257.0
DYD3_k127_1518781_3	helix_turn_helix, Lux Regulon	-	-	-	0.00000000000000000000000000000000000000000000000000000000000006762	219.0
DYD3_k127_1518781_4	universal stress protein	K14055	-	-	0.000000000000000000000000000000000000000001607	167.0
DYD3_k127_1518781_5	tetR family	-	-	-	0.000000000000000000000000000000000000000148	159.0
DYD3_k127_1518781_6	Prokaryotic dksA/traR C4-type zinc finger	-	-	-	0.00000000000000000008651	94.0
DYD3_k127_1521720_0	Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S	K00311	-	1.5.5.1	6.928e-255	796.0
DYD3_k127_1521720_1	Reduces the stability of FtsZ polymers in the presence of ATP	K06916	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032153,GO:0044424,GO:0044464,GO:0051301	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003367	361.0
DYD3_k127_1523799_0	Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane	K04744	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553	457.0
DYD3_k127_1523799_1	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation	K03771	-	5.2.1.8	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004642	361.0
DYD3_k127_1523799_2	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)	K00097	-	1.1.1.262	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647	349.0
DYD3_k127_1523799_3	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP	K01525	-	3.6.1.41	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003057	294.0
DYD3_k127_1523799_4	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	K02528	GO:0000028,GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031167,GO:0032259,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070475,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:0140102,GO:1901360,GO:1901363	2.1.1.182	0.0000000000000000000000000000000000000000000000000000000000000000000000000000001159	277.0
DYD3_k127_1523799_5	Translation initiation inhibitor, yjgF family	K15067	-	3.5.99.5	0.0000000000000000000000000000000000000000000000000000001006	198.0
DYD3_k127_1523799_6	ApaG domain	K06195	-	-	0.000000000000000000000000000000000000000000000000002119	184.0
DYD3_k127_1523799_7	3-hydroxyanthranilic acid dioxygenase	K00452	-	1.13.11.6	0.000000000000000000000000000000000000000000000000007281	186.0
DYD3_k127_1534184_0	COG4775 Outer membrane protein protective antigen OMA87	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004709	332.0
DYD3_k127_1534184_1	Sulfatase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107	308.0
DYD3_k127_1534184_2	COGs COG3907 PAP2 (acid phosphatase) superfamily protein	-	-	-	0.000000000000000000001062	104.0
DYD3_k127_1534184_3	DNA-templated transcription, initiation	K03088,K03091	-	-	0.000000001835	61.0
DYD3_k127_1535290_0	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family	K03317	GO:0003674,GO:0005215,GO:0005337,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0015858,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:1901264,GO:1901505,GO:1901642	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257	430.0
DYD3_k127_1535290_1	Inosine-uridine preferring nucleoside hydrolase	K01239,K01250	-	3.2.2.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254	411.0
DYD3_k127_1535290_2	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis	K00758	GO:0003674,GO:0003824,GO:0004645,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009032,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0034641,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360	2.4.2.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004309	398.0
DYD3_k127_1535290_3	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway	K00852	-	2.7.1.15	0.00000000000000000000000000000000003095	138.0
DYD3_k127_1535540_0	COG2303 Choline dehydrogenase and related flavoproteins	K06151	-	1.1.99.3	4.402e-199	634.0
DYD3_k127_1535540_1	Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily	K07127	-	3.5.2.17	0.000000000000000000000000000000000000000919	153.0
DYD3_k127_1535540_2	Xanthine dehydrogenase small subunit	K13481	-	1.17.1.4	0.0000000000000000006117	92.0
DYD3_k127_1535540_3	Gluconate 2-dehydrogenase subunit 3	K06152	-	1.1.99.3	0.00000000000006001	80.0
DYD3_k127_1536391_0	PFAM LOR SDH bifunctional enzyme conserved region	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225	338.0
DYD3_k127_1536391_1	Amidinotransferase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153	326.0
DYD3_k127_1536391_2	Alpha/beta hydrolase family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000004501	280.0
DYD3_k127_1536391_3	Tetratricopeptide repeat	-	-	-	0.00000000000000000000000000000000000000000000000000000000124	220.0
DYD3_k127_1536391_4	protease with the C-terminal PDZ domain	-	-	-	0.0000000000000000000000000000000000000003565	152.0
DYD3_k127_1536391_5	-	-	-	-	0.0000000000000000001022	94.0
DYD3_k127_1554012_0	acetyl-coa hydrolase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651	568.0
DYD3_k127_1554012_1	His Kinase A (phosphoacceptor) domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003539	439.0
DYD3_k127_1554012_2	DnaJ molecular chaperone homology domain	K05516	-	-	0.00000000000000000000000000000000000000000000001278	173.0
DYD3_k127_1554012_3	Protein of unknown function (DUF3313)	-	-	-	0.0000000000000000000000000000000000000000000009763	173.0
DYD3_k127_1554012_4	-	-	-	-	0.00001106	55.0
DYD3_k127_1566269_0	RmuC family	K09760	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003248	416.0
DYD3_k127_1566269_1	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000005959	264.0
DYD3_k127_1577878_0	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	-	2.859e-203	641.0
DYD3_k127_1577878_1	GEPR COG0477 Permeases of the major facilitator superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004524	507.0
DYD3_k127_1577878_2	COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001681	474.0
DYD3_k127_1577878_3	PFAM Prokaryotic protein of	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225	443.0
DYD3_k127_1577878_4	Na H antiporter	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083	413.0
DYD3_k127_1577878_5	Acetyltransferase (GNAT) domain	K03829	GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031248,GO:0031365,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564,GO:1902493,GO:1902494,GO:1990234	-	0.0000000000000000000000000000000000000000000000000000005008	198.0
DYD3_k127_1577878_6	Acetyltransferase (GNAT) domain	-	-	-	0.00000000000000000000000000000000002709	142.0
DYD3_k127_1577878_7	Cytochrome c	-	-	-	0.00000000000000000000000000000001558	130.0
DYD3_k127_1577878_8	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid	-	-	-	0.00000000000000000000000000006817	129.0
DYD3_k127_1622492_0	Major Facilitator Superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004312	360.0
DYD3_k127_1622492_1	-	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001474	296.0
DYD3_k127_1622492_2	Protein of unknown function (DUF541)	K09807	-	-	0.0000000000000000000000113	109.0
DYD3_k127_1627700_0	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons	K03313	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042	494.0
DYD3_k127_1627700_1	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate	K00761	-	2.4.2.9	0.000000000000000000000000000000000000000000000000000006082	193.0
DYD3_k127_1627700_2	Domain of unknown function (DU1801)	-	-	-	0.0000000000000000000000000000000000000000000003301	170.0
DYD3_k127_1627700_3	lactoylglutathione lyase activity	-	-	-	0.00000000000000000000000000000000000000006667	155.0
DYD3_k127_1627700_4	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	0.00000000000000000000000000000000000007642	145.0
DYD3_k127_1627700_5	PFAM Cold-shock protein, DNA-binding	K03704	-	-	0.000000000000000000000000000000501	124.0
DYD3_k127_1638336_0	Belongs to the GppA Ppx family	K01524	-	3.6.1.11,3.6.1.40	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005361	455.0
DYD3_k127_1638336_1	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily	K02015	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146	329.0
DYD3_k127_1638336_2	Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage	K08311	-	-	0.00000000000000000000000000000000000000000000000000000000000000002295	230.0
DYD3_k127_1638336_3	Bacterial extracellular solute-binding protein	K02012	-	-	0.00000000000000000000000000000000000000000000000000000001384	215.0
DYD3_k127_1638336_4	Iron--sulfur cluster insertion protein erpA	K15724	-	-	0.0000000000000000000000000000000000000000000000000472	180.0
DYD3_k127_1638336_5	PFAM Uncharacterised protein family (UPF0093)	K08973	-	-	0.00000000000000000000000000000000000000002073	159.0
DYD3_k127_1638336_6	Integral membrane protein CcmA involved in cell shape determination	-	-	-	0.0000000000000000000000000000000008703	135.0
DYD3_k127_1638336_7	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)	K00937	-	2.7.4.1	0.000000000000000000000000001634	113.0
DYD3_k127_1638336_8	Protein of unknown function, DUF484	-	-	-	0.00000000000000000000000001413	113.0
DYD3_k127_1638336_9	-	-	-	-	0.00000000000000000000002699	110.0
DYD3_k127_1645987_0	TIGRFAM DNA protecting protein DprA	K04096	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006861	369.0
DYD3_k127_1645987_1	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	K00604	-	2.1.2.9	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008403	308.0
DYD3_k127_1645987_2	Lysin motif	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006854	309.0
DYD3_k127_1645987_3	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions	K01462	GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564	3.5.1.88	0.00000000000000000000000000000000000000000000000000000000000000000002631	236.0
DYD3_k127_1645987_4	Belongs to the Smg family	K03747	-	-	0.0000000000000000000000000000000000000000000008015	170.0
DYD3_k127_1645987_5	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone	K03168	-	5.99.1.2	0.0000000000000000000000000000004349	124.0
DYD3_k127_1652007_0	COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein	-	-	-	1.092e-286	890.0
DYD3_k127_1652007_1	phosphoribosylamine-glycine ligase activity	K01945,K01955	-	6.3.4.13,6.3.5.5	4.636e-203	641.0
DYD3_k127_1652007_2	Belongs to the D-alanine--D-alanine ligase family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007949	386.0
DYD3_k127_1652007_3	Major Facilitator Superfamily	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343	320.0
DYD3_k127_1652007_4	Belongs to the D-alanine--D-alanine ligase family	K01921	-	6.3.2.4	0.000000000000000000000000000000000000000000000005761	180.0
DYD3_k127_1652007_5	Polyketide cyclase / dehydrase and lipid transport	-	-	-	0.0000000000000000008131	96.0
DYD3_k127_1652007_6	Belongs to the D-alanine--D-alanine ligase family	K01921	-	6.3.2.4	0.000005206	49.0
DYD3_k127_165421_0	VWA domain containing CoxE-like protein	K07161	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962	331.0
DYD3_k127_165421_1	XdhC and CoxI family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000001465	233.0
DYD3_k127_165421_2	transcriptional regulator	-	-	-	0.0000000000000000000000000004534	123.0
DYD3_k127_165421_3	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	K03832	-	-	0.0000000000507	75.0
DYD3_k127_1657854_0	chaperone-mediated protein folding	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004702	501.0
DYD3_k127_1657854_1	Gamma-glutamyltranspeptidase	K00681	-	2.3.2.2,3.4.19.13	0.0000000000000000000000000000000000000000000000000000000000000000001812	232.0
DYD3_k127_1657854_2	COG1226 Kef-type K transport systems	-	-	-	0.000000000000000000000000000000000000000000008762	167.0
DYD3_k127_1657854_3	Surface antigen	-	-	-	0.0000000003165	62.0
DYD3_k127_1672226_0	AraC family transcriptional regulator	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155	429.0
DYD3_k127_1675470_0	TonB dependent receptor	K02014	-	-	9.57e-214	686.0
DYD3_k127_1675470_1	AlkA N-terminal domain	K13529,K13530	-	3.2.2.21	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027	516.0
DYD3_k127_1675470_2	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated	K00567	GO:0003674,GO:0003824,GO:0003908,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360	2.1.1.63	0.00000000000000000000000000000000000000000000000000007496	193.0
DYD3_k127_1675470_3	Belongs to the aldehyde dehydrogenase family	K00135	-	1.2.1.16,1.2.1.20,1.2.1.79	0.00000000000000000000007874	97.0
DYD3_k127_1675470_4	Pyridoxamine 5'-phosphate oxidase	K07005	-	-	0.0000001996	53.0
DYD3_k127_1679965_0	Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B)	K02275	-	1.9.3.1	0.0000000000000000000000000000000000000000000000000000000000000000001255	235.0
DYD3_k127_1679965_1	Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway	K02169	-	2.1.1.197	0.000000000000000000000000000000000000000000000000000002344	201.0
DYD3_k127_1679965_2	Phosphoribosyl transferase domain	-	-	-	0.00000000000007417	77.0
DYD3_k127_1680027_0	COG0457 FOG TPR repeat	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004858	566.0
DYD3_k127_1680027_1	reductase	-	-	-	0.0000000000000000000000000000000000000000000000000000002932	205.0
DYD3_k127_1680027_2	COG0457 FOG TPR repeat	-	-	-	0.0000000000000000000009918	107.0
DYD3_k127_1680027_3	TonB dependent receptor	-	-	-	0.0000002158	56.0
DYD3_k127_172112_0	TIGRFAM pseudaminic acid synthase	K01654,K15898	-	2.5.1.56,2.5.1.97	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003041	438.0
DYD3_k127_172112_1	Glycosyl transferase, family 2	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008405	321.0
DYD3_k127_172112_2	transferase activity, transferring hexosyl groups	K15897	-	3.6.1.57	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005088	324.0
DYD3_k127_172112_3	Pseudaminic acid biosynthesis-associated methylase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000007217	274.0
DYD3_k127_172112_4	DegT DnrJ EryC1 StrS aminotransferase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000343	260.0
DYD3_k127_172112_5	Psort location Cytoplasmic, score	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000001501	235.0
DYD3_k127_1734719_0	PFAM aminotransferase class I and II, regulatory protein GntR HTH	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009312	484.0
DYD3_k127_1734719_1	EamA-like transporter family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000002331	284.0
DYD3_k127_1734719_2	Protein of unknown function (DUF3300)	-	-	-	0.000000000000000000000000000000000000000000000000000174	206.0
DYD3_k127_1734719_3	redox protein, regulator of disulfide bond formation	-	-	-	0.00000000000000000000000000000000000000001584	156.0
DYD3_k127_1734719_4	-	-	-	-	0.000000000001765	74.0
DYD3_k127_1748487_0	GTPase that plays an essential role in the late steps of ribosome biogenesis	K03977	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000327	531.0
DYD3_k127_1748487_1	histidyl-tRNA synthetase	K01892	-	6.1.1.21	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754	524.0
DYD3_k127_1748487_2	Transfers a succinyl group from succinyl-CoA to L- serine, forming succinyl-L-serine	K00641	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.1.31	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225	319.0
DYD3_k127_1748487_3	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	K17713	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001296	301.0
DYD3_k127_1748487_4	Tetratricopeptide repeat-like domain	-	-	-	0.0000000000000000000000000000009417	130.0
DYD3_k127_1748487_5	family transcriptional regulator	K15539	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0008360,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071944	-	0.000000000000672	73.0
DYD3_k127_1783619_0	Protein of unknown function (DUF1800)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007636	436.0
DYD3_k127_1783619_1	Protein of unknown function (DUF1501)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003211	396.0
DYD3_k127_1783619_2	Belongs to the UPF0178 family	K09768	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000005847	244.0
DYD3_k127_1797107_0	Glutathione S-transferase, C-terminal domain	K00799	-	2.5.1.18	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454	300.0
DYD3_k127_1797107_1	Universal stress protein family	K14055	-	-	0.000000000000005276	80.0
DYD3_k127_1797107_2	His Kinase A (phosphoacceptor) domain	-	-	-	0.00000000003867	63.0
DYD3_k127_1808133_0	DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA	K11927	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0042254,GO:0042255,GO:0042623,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0065003,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140098,GO:1901360	3.6.4.13	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004119	561.0
DYD3_k127_1808133_1	TIGRFAM daunorubicin resistance ABC transporter ATPase subunit	K01990	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001326	285.0
DYD3_k127_1808133_2	COG2366 Protein related to penicillin acylase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000003072	242.0
DYD3_k127_1808133_3	ABC-2 family transporter protein	K01992	-	-	0.000000000000000000000000005705	128.0
DYD3_k127_1808133_4	ABC-2 type transporter	K01992	-	-	0.00000000001013	77.0
DYD3_k127_1812599_0	peptidase M48, Ste24p	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000005085	276.0
DYD3_k127_1812599_1	protein conserved in bacteria	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000469	236.0
DYD3_k127_1812599_2	Protein of unknown function (DUF3313)	-	-	-	0.00001053	55.0
DYD3_k127_1826816_0	protein conserved in bacteria	K09989	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473	564.0
DYD3_k127_1826816_1	AAA domain (Cdc48 subfamily)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112	463.0
DYD3_k127_1826816_10	Sigma 54 modulation protein	K05808	-	-	0.00000000000000000000000000000000007527	137.0
DYD3_k127_1826816_11	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	K02806	GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004857,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0008047,GO:0008150,GO:0008643,GO:0009401,GO:0009893,GO:0010033,GO:0010243,GO:0010562,GO:0010604,GO:0015144,GO:0016020,GO:0016740,GO:0016772,GO:0016773,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019887,GO:0022804,GO:0022857,GO:0022898,GO:0030234,GO:0030295,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032409,GO:0032412,GO:0032879,GO:0033674,GO:0034219,GO:0034762,GO:0034765,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043086,GO:0043269,GO:0043549,GO:0044092,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0055085,GO:0060255,GO:0065007,GO:0065009,GO:0071702,GO:0071944,GO:0080090,GO:0090563,GO:0098772,GO:1901698	-	0.000000000000000000000000000000001527	138.0
DYD3_k127_1826816_12	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane	K09774	-	-	0.0000000008883	68.0
DYD3_k127_1826816_13	lipopolysaccharide transmembrane transporter activity	K02040,K11719	GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015920,GO:0016020,GO:0016021,GO:0017089,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0033036,GO:0042597,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0046836,GO:0051179,GO:0051234,GO:0071702,GO:0071944,GO:1901264	-	0.000000001377	66.0
DYD3_k127_1826816_2	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	K03092	GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941	434.0
DYD3_k127_1826816_3	Arabinose 5-phosphate isomerase	K06041	-	5.3.1.13	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014	415.0
DYD3_k127_1826816_4	ABC transporter, ATP-binding protein	K06861	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398	350.0
DYD3_k127_1826816_5	esterase of the alpha-beta hydrolase superfamily	K07001	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006223	353.0
DYD3_k127_1826816_6	Displays ATPase and GTPase activities	K06958	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008555	312.0
DYD3_k127_1826816_7	antiporter	K07301	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001415	291.0
DYD3_k127_1826816_8	alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen	K03564	-	1.11.1.15	0.0000000000000000000000000000000000000000000000000000007135	198.0
DYD3_k127_1826816_9	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate	K03270	GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008781,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016311,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016791,GO:0019143,GO:0033692,GO:0034637,GO:0034645,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0070567,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509	3.1.3.45	0.000000000000000000000000000000000000000003177	162.0
DYD3_k127_1826910_0	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	K02470	-	5.99.1.3	0.0	1120.0
DYD3_k127_1826910_1	cAMP biosynthetic process	-	-	-	0.00000000000000002792	85.0
DYD3_k127_1826910_2	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP	K03629	-	-	0.000003721	52.0
DYD3_k127_1830353_0	Domain of Unknown Function (DUF748)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005795	501.0
DYD3_k127_1830353_1	Domain of unknown function (DUF305)	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006847	281.0
DYD3_k127_1830353_2	glyoxalase bleomycin resistance protein dioxygenase	K06996	-	-	0.000000000000000000000000000000000000000000000000000007802	202.0
DYD3_k127_1834370_0	Diguanylate cyclase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009401	595.0
DYD3_k127_1851105_0	COG4993 Glucose dehydrogenase	K00114,K17760	-	1.1.2.8,1.1.9.1	6.763e-198	629.0
DYD3_k127_1851105_1	AefR-like transcriptional repressor, C-terminal region	-	-	-	0.00000007399	59.0
DYD3_k127_1852078_0	K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit	K00316	-	1.5.99.6	3.326e-242	763.0
DYD3_k127_1852078_1	Amidohydrolase family	-	-	-	1.006e-222	706.0
DYD3_k127_1852078_2	Na+/H+ antiporter family	-	-	-	1.169e-195	619.0
DYD3_k127_1852078_3	enzyme of the cupin superfamily	K06995	-	-	0.000000000000000000000000000000000000000000000000000009131	192.0
DYD3_k127_1852078_4	Sigma-70, region 4	-	-	-	0.00000000000000002105	89.0
DYD3_k127_189075_0	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly	K11942	-	5.4.99.13	0.0	1455.0
DYD3_k127_189075_1	Enoyl-CoA hydratase/isomerase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000008191	237.0
DYD3_k127_189075_2	N-terminal half of MaoC dehydratase	-	-	-	0.000000000000000000000000000000000000000000000000000000005622	202.0
DYD3_k127_189075_3	Bacterial regulatory proteins, tetR family	-	-	-	0.00000000000000000000000000000000000000000000000000008141	193.0
DYD3_k127_189075_4	COG0790 FOG TPR repeat, SEL1 subfamily	-	-	-	0.0000002473	61.0
DYD3_k127_1926665_0	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)	K01969	-	6.4.1.4	1.178e-212	666.0
DYD3_k127_1926665_1	Enoyl-(Acyl carrier protein) reductase	K13775	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384	413.0
DYD3_k127_1926665_2	PFAM aminoglycoside phosphotransferase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000436	265.0
DYD3_k127_1927349_0	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation	K01874	GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.10	1.549e-209	661.0
DYD3_k127_1927349_1	PFAM Type II secretion system protein E	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093	524.0
DYD3_k127_1927349_2	PFAM Type II secretion system protein E	K02669	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005576	435.0
DYD3_k127_1927349_3	serine threonine protein kinase	K12132	-	2.7.11.1	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151	325.0
DYD3_k127_1965138_0	Transferrin receptor-like dimerisation domain	K01301	-	3.4.17.21	1.888e-262	827.0
DYD3_k127_1965138_1	Protein of unknown function (DUF3014)	-	-	-	0.00000000000000000000000000000000000000000000001053	177.0
DYD3_k127_1965142_0	Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation	K02356	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465	307.0
DYD3_k127_1965142_1	Elongation factor P--(R)-beta-lysine ligase	K04568	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000008447	282.0
DYD3_k127_1965142_2	Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Prokaryotic type I sub-subfamily	K01613	-	4.1.1.65	0.000000000000000000000000000000000000000000000000000000000000000000002511	246.0
DYD3_k127_1965142_3	PFAM GAF domain protein	K08968	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016667,GO:0016671,GO:0033745,GO:0044424,GO:0044444,GO:0044464,GO:0055114	1.8.4.14	0.000000000000000000000000000000000000000000000000005427	192.0
DYD3_k127_1965142_4	SCO1/SenC	K07152	-	-	0.000000000000000000000000000000003558	138.0
DYD3_k127_1965142_5	COG2202 FOG PAS PAC domain	K21025	-	-	0.00000000000000000000000001979	123.0
DYD3_k127_1965142_6	Copper chaperone PCu(A)C	K09796	-	-	0.00000000000000005736	87.0
DYD3_k127_1965142_7	Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue	K07320	-	2.1.1.298	0.000000003668	62.0
DYD3_k127_1973222_0	Methylenetetrahydrofolate reductase	K00297	-	1.5.1.20	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008982	498.0
DYD3_k127_1973222_1	Uncharacterised MFS-type transporter YbfB	K05548,K05819,K08195	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999	485.0
DYD3_k127_1973222_2	Methylene-tetrahydrofolate reductase C terminal	-	-	-	0.00000000000000000000000000000000000000000000000000000008996	200.0
DYD3_k127_1973222_3	Glutathione S-transferase, C-terminal domain	K00799	-	2.5.1.18	0.000000000000000000000000000006214	120.0
DYD3_k127_1973222_4	-	-	-	-	0.0003245	43.0
DYD3_k127_1987442_0	histidinol-phosphatase activity	K01089	-	3.1.3.15,4.2.1.19	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272	419.0
DYD3_k127_1987442_1	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR	K02501	-	-	0.00000000000000000000000000000000000000000000000000000000000143	214.0
DYD3_k127_1987442_2	1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase	K01814	-	5.3.1.16	0.000000000000000000000000000000000000001336	154.0
DYD3_k127_1987442_3	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily	K00817	-	2.6.1.9	0.00000000000000000000000000000000002421	140.0
DYD3_k127_2005197_0	catalyzes a condensation reaction in fatty acid biosynthesis addition of an acyl acceptor of two carbons from malonyl-ACP	K00647	-	2.3.1.41	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367	608.0
DYD3_k127_2005197_1	Serine hydrolase involved in the detoxification of formaldehyde	K01070	-	3.1.2.12	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002963	376.0
DYD3_k127_2005197_2	Sulfite exporter TauE/SafE	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162	303.0
DYD3_k127_2005197_3	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)	K05962	-	2.7.13.1	0.00000000000000000000000000000000000000000000000000001681	196.0
DYD3_k127_2019036_0	TonB dependent receptor	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009201	342.0
DYD3_k127_2019036_1	Beta-lactamase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637	305.0
DYD3_k127_2019036_2	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain	K06978	-	-	0.00000000000000000000000000000000000000001547	162.0
DYD3_k127_2072491_0	receptor	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347	606.0
DYD3_k127_2072491_1	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins	-	-	-	0.000001232	58.0
DYD3_k127_2098715_0	Pkd domain containing protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759	543.0
DYD3_k127_2098715_1	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000008713	235.0
DYD3_k127_2098715_2	Protein of unknown function (DUF962)	-	-	-	0.0002615	48.0
DYD3_k127_2117205_0	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	K03296,K18138	-	-	0.0	1270.0
DYD3_k127_2117205_1	symporter activity	K03307,K11928	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632	610.0
DYD3_k127_2117205_2	alanine symporter	K03310	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008633	437.0
DYD3_k127_2117205_3	Barrel-sandwich domain of CusB or HlyD membrane-fusion	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009754	381.0
DYD3_k127_2117205_4	CBS domain containing protein	-	-	-	0.0000000000000000000000000000000000000000000000000000024	207.0
DYD3_k127_2117205_5	RNA-binding protein	-	-	-	0.0000000000000000000000000000002585	126.0
DYD3_k127_2121771_0	Amidohydrolase family	-	-	-	3.227e-222	701.0
DYD3_k127_2121771_1	protein conserved in bacteria	-	-	-	4.25e-216	685.0
DYD3_k127_2121771_2	membrane protein, hemolysin III homolog	K11068	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000001155	264.0
DYD3_k127_2121771_3	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	-	0.0000000000000000000000000000000000000000000001914	173.0
DYD3_k127_2121771_4	Belongs to the UPF0178 family	K09768	-	-	0.0000000000001245	70.0
DYD3_k127_2138825_0	aminotransferase	K14287	-	2.6.1.88	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005825	501.0
DYD3_k127_2138825_1	Aldehyde dehydrogenase family	K00294	-	1.2.1.88	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288	357.0
DYD3_k127_2156944_0	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor	K00281,K00283	GO:0001505,GO:0003674,GO:0003824,GO:0004375,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016491,GO:0016638,GO:0016642,GO:0017144,GO:0019464,GO:0019752,GO:0032991,GO:0042133,GO:0042135,GO:0042737,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902494,GO:1990204	1.4.4.2	3.667e-236	740.0
DYD3_k127_2156944_1	Bacterial protein of unknown function (DUF885)	-	-	-	1.44e-227	720.0
DYD3_k127_2156944_10	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	K02871	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0070180,GO:0071704,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113	-	0.000000000000000000000000000000000000000000000000000000000000000001011	231.0
DYD3_k127_2156944_11	Ribosomal protein S9/S16	K02996	GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	0.0000000000000000000000000000000000000000000000000000000002836	205.0
DYD3_k127_2156944_12	salt-induced outer membrane protein	K07283	-	-	0.0000000000000000000000000000000000000000000002533	176.0
DYD3_k127_2156944_13	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides	K11065	GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009405,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0015036,GO:0016209,GO:0016491,GO:0016667,GO:0016671,GO:0016684,GO:0019725,GO:0020012,GO:0030312,GO:0030682,GO:0032843,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043207,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0051920,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071944,GO:0075136,GO:0097237,GO:0098754,GO:0098869,GO:1990748	1.11.1.15	0.0000000000000000000000000000000000000000000007917	174.0
DYD3_k127_2156944_14	The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein	K02437	-	-	0.000000000000000000000000000000000000000001545	162.0
DYD3_k127_2156944_15	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol	K06134	-	-	0.000000000000000000000000000000000002339	141.0
DYD3_k127_2156944_16	negative regulation of hippo signaling	-	-	-	0.000000000000000000000000000000000003378	141.0
DYD3_k127_2156944_17	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family	K01934	-	6.3.3.2	0.0000000000000000000000000003365	121.0
DYD3_k127_2156944_18	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division	K09888	-	-	0.0000000000000000000002033	100.0
DYD3_k127_2156944_19	Belongs to the UPF0149 family	K09895	-	-	0.0000000000000000002103	96.0
DYD3_k127_2156944_2	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor	K00282	-	1.4.4.2	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008648	583.0
DYD3_k127_2156944_20	TIGRFAM TIGR02449 family protein	K09892	-	-	0.00000000000004151	75.0
DYD3_k127_2156944_3	aminopeptidase	K01262	-	3.4.11.9	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006799	578.0
DYD3_k127_2156944_4	7 transmembrane helices usually fused to an inactive transglutaminase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478	485.0
DYD3_k127_2156944_5	The glycine cleavage system catalyzes the degradation of glycine	K00605	-	2.1.2.10	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815	477.0
DYD3_k127_2156944_6	Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6	K03185	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724	382.0
DYD3_k127_2156944_7	Sugar-transfer associated ATP-grasp	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714	354.0
DYD3_k127_2156944_8	TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6	K18800	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464	306.0
DYD3_k127_2156944_9	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate	K01807	-	5.3.1.6	0.000000000000000000000000000000000000000000000000000000000000000000000000000000001868	276.0
DYD3_k127_2160526_0	Amidohydrolase family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429	499.0
DYD3_k127_2160526_1	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569	494.0
DYD3_k127_2160526_2	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334	447.0
DYD3_k127_2160526_3	K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit	K00316	-	1.5.99.6	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005539	279.0
DYD3_k127_2160526_4	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	K17103	-	2.7.8.8	0.00000002337	61.0
DYD3_k127_2161979_0	acyl-CoA dehydrogenase	K06445	GO:0003674,GO:0003824,GO:0003995,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016020,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0071944,GO:0072329,GO:1901575	-	1.249e-280	888.0
DYD3_k127_2161979_1	Catalyzes the reversible oxidation of malate to oxaloacetate	K00024	-	1.1.1.37	0.000000000000000000007351	92.0
DYD3_k127_2164143_0	Tetratricopeptide repeat	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000001471	296.0
DYD3_k127_2164143_1	Belongs to the monovalent cation proton antiporter 2 (cpa2) transporter (TC 2.A.37) family	K03455,K11745,K11747	-	-	0.000000000000000000000000000000000000000000000001449	178.0
DYD3_k127_2185413_0	Histidine kinase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005798	421.0
DYD3_k127_2185413_1	Pyridine nucleotide-disulphide oxidoreductase	K00266	-	1.4.1.13,1.4.1.14	0.000000000000000000000000000000000000000000000000000000000003306	211.0
DYD3_k127_2189847_0	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	K03555	-	-	0.0	1025.0
DYD3_k127_2189847_1	acetyltransferases and hydrolases with the alpha beta hydrolase fold	-	-	-	0.000000000000001155	79.0
DYD3_k127_2193345_0	pfam abc	K05847	-	-	0.00000000000000000000000000000000000000000000000000000000001373	220.0
DYD3_k127_2193345_1	M COG1732 Periplasmic glycine betaine choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)	K05845,K05846	-	-	0.000000000000000000000000000000000000000000000000000462	191.0
DYD3_k127_2193345_2	Belongs to the MsrB Met sulfoxide reductase family	K07305	-	1.8.4.12	0.00000000000000000000000000000000000000000000000003184	181.0
DYD3_k127_2193345_3	Peptidyl-prolyl cis-trans	K03772	-	5.2.1.8	0.000000000000000000000000000000000004099	148.0
DYD3_k127_219450_0	Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase	K00162,K21417	-	1.2.4.1	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002927	494.0
DYD3_k127_219450_1	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex	K00627	-	2.3.1.12	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815	362.0
DYD3_k127_219450_2	Pyruvate dehydrogenase E1 alpha subunit	K00161	-	1.2.4.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363	310.0
DYD3_k127_219450_3	glutamate dehydrogenase	K15371	-	1.4.1.2	0.000000000000000000000000000001296	128.0
DYD3_k127_2208304_0	Amidohydrolase family	-	-	-	1.033e-197	631.0
DYD3_k127_2208304_1	esterase of the alpha-beta hydrolase superfamily	K07001	GO:0003674,GO:0003824,GO:0016787	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826	344.0
DYD3_k127_2208304_2	cytochrome c5	-	-	-	0.00000000002756	68.0
DYD3_k127_2208304_3	COG3209 Rhs family protein	-	-	-	0.000000003417	59.0
DYD3_k127_2208304_5	-	-	-	-	0.000001175	55.0
DYD3_k127_2211910_0	COG1115 Na alanine symporter	K03310	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002719	351.0
DYD3_k127_2211910_1	BtpA family	-	-	-	0.000000000000000000000000000000000000000000000000000000001608	211.0
DYD3_k127_2211910_2	Belongs to the carbohydrate kinase PfkB family	-	-	-	0.0000000002324	72.0
DYD3_k127_2227392_0	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates	K03787	-	3.1.3.5	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529	335.0
DYD3_k127_2227392_1	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	K00573	GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0030091,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564	2.1.1.77	0.00000000000000000000000000000000000000000000000000000000000000000000000000004152	268.0
DYD3_k127_2227392_2	SNARE associated Golgi protein	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000001203	241.0
DYD3_k127_2227392_3	Smr protein	-	-	-	0.0000000000000000000000000000000000000141	151.0
DYD3_k127_2227392_4	peptidase	K06194	-	-	0.00000000000396	74.0
DYD3_k127_2246151_0	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family	K14392	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167	308.0
DYD3_k127_2246151_1	von Willebrand factor (vWF) type A domain	K07114	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000172	259.0
DYD3_k127_2251146_0	COG0733 Na -dependent transporters of the SNF family	K03308	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000384	435.0
DYD3_k127_2251146_1	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000003675	250.0
DYD3_k127_2251146_2	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)	K01563,K11991	-	3.5.4.33,3.8.1.5	0.000000000000000000000000000000000000000000000000000001717	195.0
DYD3_k127_2251146_3	Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella	K18691	GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944	-	0.00000000000002961	74.0
DYD3_k127_2251507_0	TonB dependent receptor	K16092	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252	469.0
DYD3_k127_2251507_1	FtsX-like permease family	K02004	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007551	399.0
DYD3_k127_2251507_2	ABC-type antimicrobial peptide transport system, permease component	K02004	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008047	366.0
DYD3_k127_2251507_3	Biotin-lipoyl like	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916	335.0
DYD3_k127_2251507_4	ABC transporter	K02003	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003536	316.0
DYD3_k127_2251507_5	peptidase activity	-	-	-	0.0000000000000000000000000000000000000000000000000009714	192.0
DYD3_k127_2251507_6	membrane	-	-	-	0.000000000000000000000000000000000000001632	149.0
DYD3_k127_2271085_0	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine	K00790	-	2.5.1.7	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102	581.0
DYD3_k127_2271085_1	Belongs to the BolA IbaG family	-	-	-	0.000000000000000000107	92.0
DYD3_k127_2284173_0	COG1960 Acyl-CoA dehydrogenases	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003869	530.0
DYD3_k127_2284173_1	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate	K03639	-	4.1.99.22	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117	416.0
DYD3_k127_2284173_2	MoaC family	K03637	-	4.6.1.17	0.0000000000000000000000000000000000000000000000000000000489	199.0
DYD3_k127_2284173_3	Molybdopterin-converting factor chain 2	K03635	-	2.8.1.12	0.000000000000000000000000000000000000000000000000004132	187.0
DYD3_k127_2284173_4	Acyl-CoA dehydrogenase, middle domain	-	-	-	0.00000000000000000000000000000000000000000000000003198	185.0
DYD3_k127_2284173_5	Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor	K03752	-	2.7.7.77	0.0000000000000000000000000000000000000000000002278	174.0
DYD3_k127_2297528_0	Predicted membrane protein (DUF2238)	K08984	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005381	279.0
DYD3_k127_2297528_1	-	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000001051	270.0
DYD3_k127_2297528_2	acetyltransferases and hydrolases with the alpha beta hydrolase fold	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000001233	256.0
DYD3_k127_2297528_3	Acetyltransferase (GNAT) domain	-	-	-	0.00000000000000000000000000000000001644	141.0
DYD3_k127_2301957_0	protease with the C-terminal PDZ domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647	305.0
DYD3_k127_2301957_1	-	-	-	-	0.000000000000000000000000000000000000000000000000000000007434	207.0
DYD3_k127_2301957_2	PFAM ATPase family associated with various cellular activities (AAA)	-	-	-	0.0000000000000000000000000000000000000000000001019	173.0
DYD3_k127_2301957_3	NlpC/P60 family	-	-	-	0.000000000000000000000000000000007444	134.0
DYD3_k127_2301957_4	-	-	-	-	0.0000000000000000000001597	105.0
DYD3_k127_2314388_0	Hydrogenase formation hypA family	K04654	GO:0003674,GO:0005488,GO:0005506,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0019538,GO:0036211,GO:0042165,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046872,GO:0046914,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0051604,GO:0070025,GO:0071704,GO:1901564	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008078	576.0
DYD3_k127_2314388_1	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide	K04656	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003305	516.0
DYD3_k127_2314388_2	TIGRFAM Hydrogenase accessory protein HypB	K04652	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865	360.0
DYD3_k127_2314388_3	Hydrogenase maturation protease	K03605	-	-	0.000000000000000000000000000000000000000000882	162.0
DYD3_k127_2314388_4	Probably plays a role in a hydrogenase nickel cofactor insertion step	K04651	-	-	0.0000000000000000000000000000001204	131.0
DYD3_k127_2314388_5	PFAM HupH hydrogenase expression protein	K03618	-	-	0.000000000000000000000000000003234	127.0
DYD3_k127_2314388_6	TIGRFAM hydrogenase assembly chaperone hypC hupF	K04653	-	-	0.0000000000000000000000000039	113.0
DYD3_k127_2319827_0	Belongs to the peptidase S11 family	K07258	GO:0000270,GO:0003674,GO:0003824,GO:0004175,GO:0004180,GO:0004185,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681	3.4.16.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002861	428.0
DYD3_k127_2319827_1	Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate	K03801	GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564	2.3.1.181	0.0000000000000000000000000000000000000000000000000000000000000000000000003024	257.0
DYD3_k127_2319827_2	PFAM Nucleotidyl transferase	K00992	-	2.7.7.99	0.0000000000000000000000000000000000002153	144.0
DYD3_k127_2319827_3	Belongs to the UPF0250 family	K09158	-	-	0.00000000000000000007956	93.0
DYD3_k127_2334810_0	Amidohydrolase family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004592	400.0
DYD3_k127_2334810_1	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA	K01754	-	4.3.1.19	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635	357.0
DYD3_k127_2334810_2	BAAT / Acyl-CoA thioester hydrolase C terminal	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000002196	236.0
DYD3_k127_2334810_3	oxidoreductase activity	-	-	-	0.0000000000000000000000000000000000000000000000000000000000138	219.0
DYD3_k127_2334810_4	CBS domain	-	-	-	0.0000000000000000000000000000000000000000000000001608	181.0
DYD3_k127_2351841_0	Methylamine dehydrogenase heavy chain (MADH)	K15229	-	1.4.9.1	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001991	339.0
DYD3_k127_2416527_0	COG1228 Imidazolonepropionase and related amidohydrolases	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156	459.0
DYD3_k127_2416527_1	Major Facilitator Superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009122	300.0
DYD3_k127_2426768_0	COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005144	327.0
DYD3_k127_2436616_0	Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate	K01952	GO:0000166,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006520,GO:0006541,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009064,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0016884,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605	6.3.5.3	0.0	1528.0
DYD3_k127_2436616_1	ABC transporter	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802	507.0
DYD3_k127_2436616_2	Domain of unknown function (DUF1820)	-	-	-	0.0000000000000000000000000000000000003396	143.0
DYD3_k127_2436616_3	-	-	-	-	0.00000000000000000000000000000000001501	147.0
DYD3_k127_2436616_4	Forkhead associated domain	K11894	-	-	0.00000000000000000000000005918	111.0
DYD3_k127_2446884_0	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate	K03701	-	-	0.0	1212.0
DYD3_k127_2446884_1	COG0189 Glutathione synthase Ribosomal protein S6 modification enzyme (glutaminyl transferase)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000002039	245.0
DYD3_k127_2446985_0	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule	K02621	-	-	7.101e-319	991.0
DYD3_k127_2446985_1	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule	K02622	-	-	3.458e-315	974.0
DYD3_k127_2446985_2	transporter of a GTP-driven Fe(2 ) uptake system	K04759	-	-	0.0000000000000000000000000000000000000004399	151.0
DYD3_k127_2446985_3	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	K03602	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494	3.1.11.6	0.0000000000000008445	79.0
DYD3_k127_2447093_0	arylsulfatase A	K01130	-	3.1.6.1	2.879e-232	734.0
DYD3_k127_2447093_1	AraC family transcriptional regulator	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293	420.0
DYD3_k127_2455607_0	N-methylhydantoinase A acetone carboxylase, beta subunit	K01469	-	3.5.2.9	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003452	431.0
DYD3_k127_2455607_1	Arginase family	K01480	-	3.5.3.11	0.000000000000000335	82.0
DYD3_k127_2459225_0	Belongs to the N-Me-Phe pilin family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000002433	299.0
DYD3_k127_2459225_1	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template	K03628	-	-	0.000000000000000000000000000000000000000000000000000000000000000001756	227.0
DYD3_k127_2459225_2	X-Pro dipeptidyl-peptidase (S15 family)	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000008524	240.0
DYD3_k127_2459225_3	Pyridoxamine 5'-phosphate oxidase	K07005	-	-	0.000000000000000000000000000000000000000000000000000000000001303	216.0
DYD3_k127_2472228_0	Cation transporter/ATPase, N-terminus	K01537	-	3.6.3.8	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004948	436.0
DYD3_k127_2472228_1	Possible lysine decarboxylase	K06966	-	3.2.2.10	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121	353.0
DYD3_k127_2472228_2	Oligoendopeptidase F	K08602	-	-	0.0000000000000000000000000000000000000000000000000000000000004547	216.0
DYD3_k127_2472228_3	RNA-metabolising metallo-beta-lactamase	K07576	-	-	0.000000000000000102	81.0
DYD3_k127_2473046_0	TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein	K00245	-	1.3.5.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746	320.0
DYD3_k127_2473046_1	helix_turn _helix lactose operon repressor	-	-	-	0.00000000000000000000000000000000000000000004011	167.0
DYD3_k127_2473046_2	SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556	-	-	-	0.000000000612	63.0
DYD3_k127_2479330_0	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family	K00383	-	1.8.1.7	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005438	310.0
DYD3_k127_2479330_1	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)	K00014	GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615	1.1.1.25	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006531	292.0
DYD3_k127_2479330_2	Belongs to the ALAD family	K01698	-	4.2.1.24	0.000000000000000000000000000000000000000000000000000000000000000000000158	241.0
DYD3_k127_2480203_0	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily	K17828	-	1.3.1.14	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008154	481.0
DYD3_k127_2480203_1	Glycerol-3-phosphate dehydrogenase	K00057	-	1.1.1.94	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008341	345.0
DYD3_k127_2480203_2	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide	K03216	GO:0001510,GO:0002128,GO:0002130,GO:0002131,GO:0002132,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016427,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052665,GO:0052666,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.1.1.207	0.000000000000000000000000000000000000000000000000000000000000001629	228.0
DYD3_k127_2480203_3	response regulator	K07712	-	-	0.00000001711	55.0
DYD3_k127_2490113_0	GTP-binding protein TypA	K06207	-	-	2.759e-289	898.0
DYD3_k127_2490113_1	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011	399.0
DYD3_k127_2497591_0	Catalyzes carboxymethyl transfer from carboxy-S- adenosyl-L-methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5-carboxymethoxyuridine (cmo5U) at position 34 in tRNAs	K15257	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000006458	259.0
DYD3_k127_2497591_1	Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM)	K15256	GO:0002097,GO:0002098,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360	-	0.000000000000000000000000000000000000000000000000000000000000000000000003542	251.0
DYD3_k127_2497591_2	D-alanyl-D-alanine carboxypeptidase	K07260	-	3.4.17.14	0.000000000000000000000000000000000000000000498	176.0
DYD3_k127_2497591_3	translation elongation factor activity	K02358	GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576	-	0.00000000000000698	75.0
DYD3_k127_2497591_4	-	-	-	-	0.00000002521	56.0
DYD3_k127_2503219_0	DNA mediated transformation	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006638	468.0
DYD3_k127_2503219_1	conserved repeat domain protein	-	-	-	0.0004443	53.0
DYD3_k127_2514066_0	TonB dependent receptor	-	-	-	0.0	1062.0
DYD3_k127_2514066_1	Response regulator of the LytR AlgR family	K02477	-	-	0.000000000000000000000000000000000000000002053	167.0
DYD3_k127_2514066_2	Signal transduction histidine kinase, LytS	K02478	-	2.7.13.3	0.000000000000000000000000000000000000000003503	171.0
DYD3_k127_2514066_3	COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	-	-	-	0.0000000000000000000000000000000000000001058	156.0
DYD3_k127_2514066_4	transcriptional regulator	-	-	-	0.00000000000000000000000000001565	129.0
DYD3_k127_2514066_5	-	-	-	-	0.0000000000000000116	92.0
DYD3_k127_252084_0	Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety	K00453	GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009117,GO:0009150,GO:0009259,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019693,GO:0019752,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051186,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606	1.13.11.11	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168	340.0
DYD3_k127_252084_1	COG1071 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	K00161	-	1.2.4.1	0.00000000000000000000000000000000000000000000000000000001052	202.0
DYD3_k127_252084_2	MarR family transcriptional regulator	-	-	-	0.0000000000000000000000000000000000000000004707	162.0
DYD3_k127_252084_3	Reduces the stability of FtsZ polymers in the presence of ATP	K06916	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032153,GO:0044424,GO:0044464,GO:0051301	-	0.0002223	43.0
DYD3_k127_2524951_0	Amidohydrolase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003023	443.0
DYD3_k127_2524951_1	ATPases involved in chromosome partitioning	K03496	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005655	356.0
DYD3_k127_2524951_2	ParB-like nuclease domain	K03497	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285	326.0
DYD3_k127_2533417_0	Amidohydrolase family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132	575.0
DYD3_k127_2533417_1	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid	K01069	-	3.1.2.6	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726	428.0
DYD3_k127_2533417_2	Zn-dependent peptidases	K07263	-	-	0.00000000000000000000000000000000000000000000000000000000000000003484	228.0
DYD3_k127_2564772_0	oxidoreductase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005007	465.0
DYD3_k127_2564772_1	(ABC) transporter	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002399	289.0
DYD3_k127_2564772_2	sodium proton antiporter	-	-	-	0.0000000000000000000000000000000000000000000000000000000003412	205.0
DYD3_k127_2569454_0	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	K02906	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000491	304.0
DYD3_k127_2569454_1	translation elongation factor activity	K02358	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000005029	246.0
DYD3_k127_2569454_2	Forms part of the polypeptide exit tunnel	K02926	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000001134	259.0
DYD3_k127_2569454_3	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity	K02886	GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	0.00000000000000000000000000000000000000000000000000000000000000000002127	240.0
DYD3_k127_2569454_4	Involved in the binding of tRNA to the ribosomes	K02946	-	-	0.000000000000000000000000000000000000000000000000004702	182.0
DYD3_k127_2569454_5	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome	K02892	-	-	0.000000000000000000000001088	111.0
DYD3_k127_2580499_0	metal-dependent hydrolase with the TIM-barrel fold	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159	423.0
DYD3_k127_2580499_1	-	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000001157	258.0
DYD3_k127_2580499_2	Putative phosphatase (DUF442)	-	-	-	0.000000000000000000000000000000000000000000000000000000008055	201.0
DYD3_k127_2580499_3	Part of the ABC transporter complex PstSACB involved in phosphate import	-	-	-	0.00000000000000000000000000000000000000003486	157.0
DYD3_k127_2580499_4	Deoxynucleoside kinase	-	-	-	0.00000000000000000000000000000000000000009362	152.0
DYD3_k127_2580499_5	-	-	-	-	0.0000003125	60.0
DYD3_k127_2609474_0	PFAM UvrD REP helicase	K03657	-	3.6.4.12	1.007e-300	937.0
DYD3_k127_2609474_1	Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA	K03498	-	-	1.126e-194	620.0
DYD3_k127_2609474_2	PFAM TrkA-N domain	K03499	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667	599.0
DYD3_k127_2609474_3	Outer membrane protein beta-barrel domain	-	-	-	0.00000000000000001741	91.0
DYD3_k127_2609474_4	COG4665 TRAP-type mannitol chloroaromatic compound transport system, small permease component	-	-	-	0.00000000000213	69.0
DYD3_k127_2609474_5	COG0457 FOG TPR repeat	-	-	-	0.00000007306	65.0
DYD3_k127_2611441_0	Arginase family	K01480	-	3.5.3.11	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094	503.0
DYD3_k127_2611441_1	Peptidase family S58	-	-	-	0.000000000000000000000000000000000000000000000000000000000000001631	229.0
DYD3_k127_2611441_2	5-oxoprolinase	K01469,K01473	-	3.5.2.14,3.5.2.9	0.000000000000000000000000000000000000000000002082	168.0
DYD3_k127_2622199_0	TonB dependent receptor	K02014	-	-	2.186e-207	661.0
DYD3_k127_2622199_1	PFAM SMP-30 Gluconolaconase	-	-	-	0.00000000000000000000000000001169	124.0
DYD3_k127_2626210_0	COG0823 Periplasmic component of the Tol biopolymer transport system	-	-	-	7.359e-266	845.0
DYD3_k127_2626210_1	Concanavalin A-like lectin/glucanases superfamily	-	-	-	2.838e-265	841.0
DYD3_k127_2626210_2	-	-	-	-	5.002e-212	670.0
DYD3_k127_2626210_3	-	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225	465.0
DYD3_k127_2626210_4	Protein of unknown function (DUF3570)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686	378.0
DYD3_k127_2626210_5	COG3103 SH3 domain protein	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000007911	265.0
DYD3_k127_2626210_6	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000005178	246.0
DYD3_k127_2626210_7	Domain of unknown function (DUF4266)	-	-	-	0.00000000000000000000000002872	109.0
DYD3_k127_2629715_0	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome	K02357	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000713	348.0
DYD3_k127_2629715_1	Belongs to the universal ribosomal protein uS2 family	K02967	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000083	345.0
DYD3_k127_2629715_2	Catalyzes the reversible phosphorylation of UMP to UDP	K09903	-	2.7.4.22	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028	334.0
DYD3_k127_2629715_3	Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di-trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide	K00806	-	2.5.1.31	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324	299.0
DYD3_k127_2629715_4	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another	K02838	GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576	-	0.000000000000000000000000000000000000000000000000000000000000000000000000002858	256.0
DYD3_k127_2629715_5	Belongs to the CDS family	K00981	GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.7.41	0.000000000000000000000000000001931	128.0
DYD3_k127_2629715_6	Methionine aminopeptidase	K01265	-	3.4.11.18	0.0000003344	55.0
DYD3_k127_2631762_0	PFAM Prenyltransferase squalene oxidase	K06045	-	4.2.1.129,5.4.99.17	0.000000000000000000000000000000000000000000000000000000000000000000000003558	258.0
DYD3_k127_2631762_1	Sel1-like repeats.	K07126	-	-	0.000000000000000000000000000000000001604	149.0
DYD3_k127_2631762_2	-	-	-	-	0.00000000000000000000000003022	113.0
DYD3_k127_2631762_3	alanine dehydrogenase	K00259	-	1.4.1.1	0.0000000006814	60.0
DYD3_k127_2668263_0	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS	K01881	-	6.1.1.15	8.953e-238	747.0
DYD3_k127_2668263_1	AIR synthase related protein, N-terminal domain	K01933	-	6.3.3.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005311	363.0
DYD3_k127_2668263_10	Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer)	K01613	-	4.1.1.65	0.000000000000000000000000002137	121.0
DYD3_k127_2668263_11	arsenate reductase	K00537	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	1.20.4.1	0.000000000000000000000000008184	113.0
DYD3_k127_2668263_12	Belongs to the acylphosphatase family	K01512	GO:0003674,GO:0003824,GO:0003998,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0016787,GO:0016817,GO:0016818,GO:0050896	3.6.1.7	0.0000000000000000002932	94.0
DYD3_k127_2668263_2	AI-2E family transporter	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001843	293.0
DYD3_k127_2668263_3	Phage SPO1 DNA polymerase-related protein	K21929	-	3.2.2.27	0.0000000000000000000000000000000000000000000000000000000000000000000000001874	254.0
DYD3_k127_2668263_4	Belongs to the WrbA family	K03809	-	1.6.5.2	0.00000000000000000000000000000000000000000000000000000000000000000000001743	248.0
DYD3_k127_2668263_5	Belongs to the DnaA family. HdA subfamily	K10763	GO:0000166,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0017076,GO:0019219,GO:0019222,GO:0030174,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043531,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:2000104,GO:2000112,GO:2000113	-	0.0000000000000000000000000000000000000000000000000000000000003346	225.0
DYD3_k127_2668263_6	COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	-	-	-	0.000000000000000000000000000000000000000000000000000000000006245	213.0
DYD3_k127_2668263_7	PFAM CDP-alcohol phosphatidyltransferase	K08744	-	2.7.8.41	0.0000000000000000000000000000000000000000000000003498	182.0
DYD3_k127_2668263_8	Ribosomal-protein-alanine acetyltransferase	K03789	-	2.3.1.128	0.000000000000000000000000000000000000000002703	164.0
DYD3_k127_2668263_9	Uncharacterized protein conserved in bacteria (DUF2066)	K09938	-	-	0.000000000000000000000000000000000007334	151.0
DYD3_k127_2680610_0	Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle	K01596	-	4.1.1.32	2.719e-225	705.0
DYD3_k127_2680610_1	Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle	K01596	-	4.1.1.32	0.0000008115	52.0
DYD3_k127_2716551_0	Belongs to the MurCDEF family	K01924	GO:0000166,GO:0000270,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0035639,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0046872,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576	6.3.2.8	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185	592.0
DYD3_k127_2716551_1	Peptidoglycan polymerase that is essential for cell division	K03588	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834	392.0
DYD3_k127_2716551_2	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)	K02563	-	2.4.1.227	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007455	384.0
DYD3_k127_2716551_3	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)	K01925	-	6.3.2.9	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269	314.0
DYD3_k127_2716551_4	Cell wall formation	K00075	-	1.3.1.98	0.000000000000000000512	90.0
DYD3_k127_2717014_0	Tetratricopeptide repeat	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155	417.0
DYD3_k127_2717014_1	Tetratricopeptide repeat	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238	413.0
DYD3_k127_2717014_2	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein	K03734	-	2.7.1.180	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000397	341.0
DYD3_k127_2717014_3	Zn-dependent protease with chaperone function	K03799	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001333	289.0
DYD3_k127_2717014_4	LemA family	K03744	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000008889	267.0
DYD3_k127_2717014_5	-	-	-	-	0.000000000000000000000000000000000000000000000000000000000547	208.0
DYD3_k127_2717014_6	Thioredoxin-like	-	-	-	0.000000000000000000000000000000000000000000000000000754	189.0
DYD3_k127_2723077_0	cysteine protease	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001601	284.0
DYD3_k127_2723077_1	Adenylate cyclase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000004418	235.0
DYD3_k127_2731050_0	TIGRFAM glutamine synthetase, type I	K01915	-	6.3.1.2	1.644e-243	759.0
DYD3_k127_2731050_1	Glycyl-tRNA synthetase beta subunit	K01879	-	6.1.1.14	2.755e-215	688.0
DYD3_k127_2731050_10	Tetratricopeptide repeat	-	-	-	0.000009048	57.0
DYD3_k127_2731050_2	glycyl-tRNA synthetase, alpha subunit	K01878	-	6.1.1.14	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704	506.0
DYD3_k127_2731050_3	COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains	K07712	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000789	443.0
DYD3_k127_2731050_4	signal transduction histidine kinase	K07708	-	2.7.13.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009358	324.0
DYD3_k127_2731050_5	Adenylate cyclase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001405	297.0
DYD3_k127_2731050_6	Adenylate cyclase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000002192	272.0
DYD3_k127_2731050_7	cAMP biosynthetic process	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000002835	237.0
DYD3_k127_2731050_8	Phosphate acyltransferases	K00655	-	2.3.1.51	0.0000000000000000000000000000000000000000000000000000000000000004203	227.0
DYD3_k127_2731050_9	Domain of unknown function (DUF4124)	-	-	-	0.000000000000000000001648	101.0
DYD3_k127_2736738_0	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	K01703	-	4.2.1.33,4.2.1.35	4.166e-206	650.0
DYD3_k127_2736738_1	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)	K01649	-	2.3.3.13	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004836	608.0
DYD3_k127_2736738_2	Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate	K00052	GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.85	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127	469.0
DYD3_k127_2736738_3	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family	K00826	-	2.6.1.42	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308	421.0
DYD3_k127_2736738_4	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate	K00053	-	1.1.1.86	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009944	274.0
DYD3_k127_2736738_5	Threonine dehydratase	K01754	-	4.3.1.19	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000104	286.0
DYD3_k127_2736738_6	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate	K01704	-	4.2.1.33,4.2.1.35	0.0000000000000000000000000000000000000000000000000000000000000000000000003034	252.0
DYD3_k127_2736738_7	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine	K00641	-	2.3.1.31	0.0000000000000000000000000000000000000000003564	162.0
DYD3_k127_2739097_0	PFAM MotA TolQ ExbB proton channel	K03562	-	-	0.000000000000000000000000000000000000000000000000000000000000000000001391	242.0
DYD3_k127_2739097_1	Biopolymer transport protein ExbD TolR	K03560	-	-	0.00000000000000000000000000000000000000000006339	164.0
DYD3_k127_2739097_2	Thioesterase superfamily	K01075,K07107	GO:0003674,GO:0003824,GO:0016787,GO:0016788,GO:0016790	3.1.2.23	0.0000000000000000000000000006112	116.0
DYD3_k127_2739097_3	TonB C terminal	K03646	-	-	0.00000000000000000000005185	109.0
DYD3_k127_2753582_0	Electron transfer flavoprotein	K03522	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136	444.0
DYD3_k127_2753582_1	electron transfer flavoprotein beta subunit	K03521	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009124	336.0
DYD3_k127_2753582_2	Peroxiredoxin	K03386	-	1.11.1.15	0.000000000000000000000000000000000000000000000000000000000000003186	222.0
DYD3_k127_2753582_3	acyl-CoA dehydrogenase	-	-	-	0.000000000000000000000000000000006712	134.0
DYD3_k127_2753582_4	Rhodanese Homology Domain	K01011	-	2.8.1.1,2.8.1.2	0.000000000000000000000002727	105.0
DYD3_k127_2755909_0	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates	K01937	-	6.3.4.2	8.359e-259	806.0
DYD3_k127_2755909_1	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis	K01689	-	4.2.1.11	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041	584.0
DYD3_k127_2755909_2	3-deoxy-D-manno-octulosonic acid 8-phosphate synthase	K01627	-	2.5.1.55	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002298	441.0
DYD3_k127_2755909_3	Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs	K06176	GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360	5.4.99.27	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000482	315.0
DYD3_k127_2755909_4	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic	K05589	-	-	0.00000000000003408	76.0
DYD3_k127_2755909_5	Smr domain	-	-	-	0.0000006789	51.0
DYD3_k127_2763951_0	signal transduction protein containing a membrane domain, an EAL and a GGDEF domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006579	344.0
DYD3_k127_2763951_1	Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis	K03683	GO:0000287,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0031123,GO:0034470,GO:0034641,GO:0034660,GO:0042780,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001989	288.0
DYD3_k127_2763951_2	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides	-	-	-	0.0000000006125	60.0
DYD3_k127_2774578_0	Bacterial protein of unknown function (DUF885)	-	-	-	5.001e-213	677.0
DYD3_k127_2774578_1	Rieske 2Fe-2S	K00479	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008711	360.0
DYD3_k127_2774578_2	MafB19-like deaminase	K01485	-	3.5.4.1	0.0000000000000000000000000000000000000000000000000000000000000000007444	233.0
DYD3_k127_2782549_0	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate	K01679	-	4.2.1.2	4.791e-197	625.0
DYD3_k127_2782549_1	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily	K01756	-	4.3.2.2	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827	578.0
DYD3_k127_2782549_2	PFAM NUDIX hydrolase	-	-	-	0.00000000000000000000000000000004361	132.0
DYD3_k127_2782549_3	A domain family that is part of the cupin metalloenzyme superfamily.	K18850	GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0016491,GO:0016705,GO:0016706,GO:0018193,GO:0018195,GO:0019538,GO:0030961,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046872,GO:0046914,GO:0051213,GO:0055114,GO:0071704,GO:1901564	1.14.11.47	0.0000000000000003164	82.0
DYD3_k127_2795091_0	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	K03086	GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016987,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043254,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2000142,GO:2001141	-	5.399e-259	811.0
DYD3_k127_2795091_1	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	K02316	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321	351.0
DYD3_k127_2798066_0	COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs	K07303	-	1.3.99.16	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861	402.0
DYD3_k127_2798066_1	[2Fe-2S] binding domain	K03518	-	1.2.5.3	0.0000000000000000000000000000000000000000000000000000000000000000000008565	241.0
DYD3_k127_2798066_2	COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase	-	-	-	0.0000000000000000000000000000000000000000000000000000001249	201.0
DYD3_k127_2823365_0	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity	K03782	-	1.11.1.21	0.0	1140.0
DYD3_k127_2823365_1	Protein of unknown function, DUF481	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003559	327.0
DYD3_k127_2823365_2	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	K00573	-	2.1.1.77	0.00000000000000000000000000000000000000000000000000000000000000000000002209	250.0
DYD3_k127_2823365_3	Glutathione S-transferase, C-terminal domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000002435	235.0
DYD3_k127_2840192_0	dihydroorotase	-	-	-	1.395e-254	790.0
DYD3_k127_2840192_1	cytosine purines uracil thiamine allantoin	K03457	-	-	3.227e-230	721.0
DYD3_k127_2840192_2	Dihydroorotate dehydrogenase	-	-	-	1.553e-218	685.0
DYD3_k127_2840192_3	COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases	K17722	-	1.3.1.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000172	531.0
DYD3_k127_2840192_4	Carbon-nitrogen hydrolase	K01431	-	3.5.1.6	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316	494.0
DYD3_k127_2840192_5	5'-nucleotidase, C-terminal domain	-	-	-	0.000000000000000000000000000000000000000000000000005846	201.0
DYD3_k127_2840192_6	Acid phosphatase	-	-	-	0.000000000000000000000000000000000000000000000008324	185.0
DYD3_k127_2840192_7	This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis	K01489	-	3.5.4.5	0.0000000000000000000000002071	108.0
DYD3_k127_284244_0	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA	K04066	-	-	3.498e-200	647.0
DYD3_k127_284244_1	Arginyl-tRNA synthetase	K01887	-	6.1.1.19	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008747	579.0
DYD3_k127_284244_2	COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	K03088	-	-	0.000000000001126	72.0
DYD3_k127_28566_0	-	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007909	308.0
DYD3_k127_28566_1	COG1522 Transcriptional regulators	K05800	-	-	0.000000000000000000000000000000000000000000001007	169.0
DYD3_k127_28566_2	-	-	-	-	0.0000000000000000291	85.0
DYD3_k127_2882240_0	Peptidase dimerisation domain	-	-	-	3.68e-234	732.0
DYD3_k127_2882240_1	domain, Protein	-	-	-	0.00000000000000000000000000000000000000000000000000000000000006002	217.0
DYD3_k127_2882240_2	Anti-ECFsigma factor ChrR	-	-	-	0.00000000000000000000005067	98.0
DYD3_k127_2884170_0	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)	K01870	-	6.1.1.5	0.0	1045.0
DYD3_k127_2884170_1	Oxidoreductase molybdopterin binding domain	K07147	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149	401.0
DYD3_k127_2884170_2	PFAM alpha beta hydrolase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371	308.0
DYD3_k127_2884170_3	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain	K17247	-	-	0.0000000000000000000000000000000000000000000000000000001233	202.0
DYD3_k127_2884170_4	DSBA-like thioredoxin domain	-	-	-	0.00000000000000000000000000000000000000000524	163.0
DYD3_k127_2884170_5	COG0790 FOG TPR repeat, SEL1 subfamily	-	-	-	0.00000000000000000000000001527	116.0
DYD3_k127_2893536_0	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins	K03798	-	-	4.442e-288	897.0
DYD3_k127_2893536_1	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives	K00796	-	2.5.1.15	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862	317.0
DYD3_k127_2893536_2	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit	K02427	GO:0000027,GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008650,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022607,GO:0022613,GO:0022618,GO:0031167,GO:0032259,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.166	0.000000000000000000000000000000000000000000000000000000000033	209.0
DYD3_k127_2893536_3	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate	K03431	-	5.4.2.10	0.000000000000000000000000000000000000000000000000000005468	194.0
DYD3_k127_2895222_0	Domain of Unknown Function (DUF748)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289	446.0
DYD3_k127_2895222_1	cAMP biosynthetic process	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000002725	259.0
DYD3_k127_2895222_2	long-chain fatty acid transport protein	-	-	-	0.00000000000000000000000000000000000000000363	166.0
DYD3_k127_2895222_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	-	-	-	0.0000000000000000801	83.0
DYD3_k127_2903869_0	Belongs to the TPP enzyme family	K01652	-	2.2.1.6	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374	408.0
DYD3_k127_2903869_1	Glutathione S-transferase, C-terminal domain	K11209	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088	320.0
DYD3_k127_2903869_2	transcriptional regulator	K16516	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518	319.0
DYD3_k127_2903869_3	KR domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000001236	266.0
DYD3_k127_2903869_4	Glutathione S-transferase, C-terminal domain	K00799	-	2.5.1.18	0.000000000000000000000000000000000000000001694	165.0
DYD3_k127_2903869_5	Dehydrogenase	K00114	-	1.1.2.8	0.00008775	46.0
DYD3_k127_2903869_6	auxin-activated signaling pathway	K07088	-	-	0.00009437	51.0
DYD3_k127_2904405_0	PFAM Type II secretion system protein E	K02669	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005763	565.0
DYD3_k127_2904405_1	twitching motility protein	K02670	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912	540.0
DYD3_k127_2904405_2	twitching motility protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104	424.0
DYD3_k127_2904405_3	Oxidoreductase FAD-binding domain	K02823	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327	301.0
DYD3_k127_2904405_4	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis	K06997	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000002368	249.0
DYD3_k127_2904405_5	Belongs to the ATCase OTCase family	K00609	-	2.1.3.2	0.00000000000000000000000000000000000000000000000000000000000000009513	228.0
DYD3_k127_2904841_0	von Willebrand factor, type A	K07114	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006006	441.0
DYD3_k127_2904841_1	associated with various cellular activities	K03924	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003169	424.0
DYD3_k127_2904841_2	von Willebrand factor, type A	K07114	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126	362.0
DYD3_k127_2904841_3	Protein of unknown function DUF58	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000001098	260.0
DYD3_k127_2904841_4	Oxygen tolerance	-	-	-	0.00000000000000000000000000000000001549	146.0
DYD3_k127_2904841_5	Domain of unknown function (DUF4381)	-	-	-	0.000000000000000000000000001053	121.0
DYD3_k127_2904841_6	Uncharacterized ACR, COG1430	K09005	-	-	0.00000000000000000000000008494	117.0
DYD3_k127_2913796_0	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins	K03217	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292	501.0
DYD3_k127_2913796_1	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	K02313	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309	432.0
DYD3_k127_2913796_2	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34	K03650	GO:0000166,GO:0001510,GO:0001882,GO:0001883,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006457,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009268,GO:0009451,GO:0009628,GO:0009636,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0030488,GO:0030955,GO:0031420,GO:0032259,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042221,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0061077,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003169	409.0
DYD3_k127_2913796_3	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme	K03536	-	3.1.26.5	0.000000000000000000523	94.0
DYD3_k127_2913796_4	Belongs to the bacterial ribosomal protein bL34 family	K02914	-	-	0.000000000000005589	76.0
DYD3_k127_2976510_0	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)	K01735	-	4.2.3.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308	394.0
DYD3_k127_2976510_1	Belongs to the dGTPase family. Type 2 subfamily	K01129	-	3.1.5.1	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488	366.0
DYD3_k127_3003172_0	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)	K00773	GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0008479,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0046872,GO:0046914,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.4.2.29	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754	452.0
DYD3_k127_3003172_1	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)	K07568	-	2.4.99.17	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005963	368.0
DYD3_k127_3003172_2	PDZ domain	-	-	-	0.000000000000000000000000005948	123.0
DYD3_k127_3010594_0	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases	K00974	-	2.7.7.72	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005609	531.0
DYD3_k127_3010594_1	Putative aminopeptidase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000001796	274.0
DYD3_k127_3010594_2	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin	K06153	-	3.6.1.27	0.0000000000000000000000000000000000000000000000000000000000000000000000001373	256.0
DYD3_k127_3010594_3	Putative S-adenosyl-L-methionine-dependent methyltransferase	-	-	-	0.0000000489	56.0
DYD3_k127_3020002_0	Catalyzes the reversible oxidation of malate to oxaloacetate	K00024	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072350,GO:0072524,GO:1901360,GO:1901564	1.1.1.37	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006538	486.0
DYD3_k127_3020002_1	ATPases associated with a variety of cellular activities	K02049	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386	363.0
DYD3_k127_3020002_2	Belongs to the sigma-70 factor family. ECF subfamily	K03088	-	-	0.000000000000000000000002156	107.0
DYD3_k127_3020002_3	Pentapeptide repeats (8 copies)	-	-	-	0.000000001752	59.0
DYD3_k127_3028282_0	Major Facilitator Superfamily	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004105	413.0
DYD3_k127_3028282_1	KR domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006806	333.0
DYD3_k127_303799_0	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	K03072	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006076	567.0
DYD3_k127_303799_1	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	K03074	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008855	315.0
DYD3_k127_303799_2	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)	K00773	GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0008479,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0046872,GO:0046914,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	2.4.2.29	0.00000000000000000000000000000000000004328	144.0
DYD3_k127_303799_3	Preprotein translocase, YajC subunit	K03210	-	-	0.0000000000000000000000000001049	118.0
DYD3_k127_3048_0	MgtE intracellular N domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722	327.0
DYD3_k127_3048_1	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA	K01895	-	6.2.1.1	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785	325.0
DYD3_k127_3048_2	Belongs to the HpcH HpaI aldolase family	K01644	-	4.1.3.34	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001788	291.0
DYD3_k127_3048_3	PFAM aldo keto reductase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007028	282.0
DYD3_k127_3048_4	N-terminal half of MaoC dehydratase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000007865	244.0
DYD3_k127_3053012_0	Peptidase inhibitor I9	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008003	598.0
DYD3_k127_3053012_1	Belongs to the DapA family	K01714	-	4.3.3.7	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005818	382.0
DYD3_k127_3053012_2	-	-	-	-	0.00000000000000000000000000000000000000000000000000001917	201.0
DYD3_k127_3053012_3	-	-	-	-	0.000000000000000000000000000007627	123.0
DYD3_k127_3053012_4	Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX	K00228	GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983	1.3.3.3	0.0000000000000000000001932	96.0
DYD3_k127_306002_0	COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase	K01923	GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.2.6	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005881	415.0
DYD3_k127_306002_1	ABC transporter substrate-binding protein	K02016	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005559	375.0
DYD3_k127_306002_2	Belongs to the ribulose-phosphate 3-epimerase family	K01783	-	5.1.3.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003365	352.0
DYD3_k127_306002_3	ribonuclease BN	K07058	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002582	303.0
DYD3_k127_306002_4	COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	K10914	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004514	283.0
DYD3_k127_306002_5	Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host	K05801	-	-	0.000000000000000000000000000000000000000000000000009847	189.0
DYD3_k127_306002_6	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol	K06134	-	-	0.0000000000000000000000000000000000000000000006163	168.0
DYD3_k127_3070015_0	TAP-like protein	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008967	364.0
DYD3_k127_3070015_1	abc transporter atp-binding protein	K09697	-	3.6.3.7	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606	303.0
DYD3_k127_3070015_2	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34	K03495	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000006047	257.0
DYD3_k127_3070015_3	permease	K09696	-	-	0.00000000000000000001515	95.0
DYD3_k127_307301_0	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol	K06131	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006516	499.0
DYD3_k127_307301_1	FAD linked oxidases, C-terminal domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002912	364.0
DYD3_k127_307301_2	Amino-transferase class IV	K00826	-	2.6.1.42	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002391	342.0
DYD3_k127_3076104_0	Belongs to the metallo-dependent hydrolases superfamily. NagA family	K01443	-	3.5.1.25	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613	404.0
DYD3_k127_3076104_1	SIS domain	K00820	-	2.6.1.16	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005971	367.0
DYD3_k127_3076104_2	UTRA	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004102	282.0
DYD3_k127_3076104_3	TonB dependent receptor	K02014	-	-	0.00000000000000000000000000000000000000000000000000000000000000000288	233.0
DYD3_k127_3076104_4	-	-	-	-	0.0000000000000000000000000000000000000000000009223	169.0
DYD3_k127_307807_0	acetyl-CoA carboxylase, biotin carboxylase	K01961	-	6.3.4.14,6.4.1.2	1.153e-229	717.0
DYD3_k127_307807_1	Bifunctional purine biosynthesis protein PurH	K00602	-	2.1.2.3,3.5.4.10	5.203e-211	666.0
DYD3_k127_307807_10	Protein of unknown function (DUF3426)	-	-	-	0.0000003378	63.0
DYD3_k127_307807_2	Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps	K04084	-	1.8.1.8	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158	623.0
DYD3_k127_307807_3	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines	K05540	GO:0002943,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009314,GO:0009451,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050896,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369	415.0
DYD3_k127_307807_4	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	K04077	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009996	360.0
DYD3_k127_307807_5	Ribosomal protein L11 methyltransferase	K02687	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006480,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018011,GO:0018012,GO:0018022,GO:0018023,GO:0018193,GO:0018194,GO:0018205,GO:0019538,GO:0031365,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008277	293.0
DYD3_k127_307807_6	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	K04078	-	-	0.000000000000000000000000000000000000000000000001869	174.0
DYD3_k127_307807_7	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA	K02160	-	-	0.00000000000000000000000000000000000000000000006011	174.0
DYD3_k127_307807_8	Thioredoxin-like	-	-	-	0.0000000000000000000000000002295	123.0
DYD3_k127_307807_9	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters	K03557	-	-	0.000000000000000000001432	98.0
DYD3_k127_3078323_0	TonB-dependent receptor plug	K02014	-	-	4.868e-243	784.0
DYD3_k127_3078323_1	Sulfotransferase domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135	332.0
DYD3_k127_3078323_2	Polysaccharide biosynthesis protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039	293.0
DYD3_k127_3078323_3	Aspartyl/Asparaginyl beta-hydroxylase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004954	290.0
DYD3_k127_3078323_4	Sulfotransferase domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000001032	282.0
DYD3_k127_3078323_5	Methyltransferase domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000006752	260.0
DYD3_k127_3078323_6	capsule polysaccharide	K07265	-	-	0.00000000000000000000000000000006175	141.0
DYD3_k127_3078323_7	COG0457 FOG TPR repeat	-	-	-	0.00000000000000004206	94.0
DYD3_k127_3078323_8	Domain of unknown function (DUF4826)	-	-	-	0.000000001178	65.0
DYD3_k127_3078932_0	COG0811 Biopolymer transport proteins	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206	323.0
DYD3_k127_3078932_1	PEGA domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000299	295.0
DYD3_k127_3078932_2	-	-	-	-	0.0000000000000000000000000000000000000000009096	169.0
DYD3_k127_308436_0	Membrane	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005007	359.0
DYD3_k127_308436_1	COG1680 Beta-lactamase class C and other penicillin binding proteins	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000227	275.0
DYD3_k127_308436_2	mandelate racemase muconate lactonizing	K01776,K02549,K19802	-	4.2.1.113,5.1.1.20,5.1.1.3	0.0000000000000000000000000000000004233	132.0
DYD3_k127_3088115_0	Bacterial protein of unknown function (DUF885)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574	599.0
DYD3_k127_3088115_1	PFAM cytochrome c	-	-	-	0.00000000000000000000000000000000000000000000000000000005644	205.0
DYD3_k127_3088115_2	L,D-transpeptidase catalytic domain	-	-	-	0.0000000000000000000000000000000000000000000000006744	189.0
DYD3_k127_3088115_3	Thiol disulfide interchange protein	K03673	-	-	0.0000000000000000000000000000000000000004165	161.0
DYD3_k127_3088115_4	Necessary for normal cell division and for the maintenance of normal septation	K03978	-	-	0.0004742	44.0
DYD3_k127_3088783_0	probably responsible for the translocation of the substrate across the membrane	K02037	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854	569.0
DYD3_k127_3088783_1	Domain of unknown function (DUF3333)	K02038	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101	515.0
DYD3_k127_3088783_2	COG0226 ABC-type phosphate transport system, periplasmic component	K02040	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145	486.0
DYD3_k127_3088783_3	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls	K01439	-	3.5.1.18	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801	469.0
DYD3_k127_3088783_4	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system	K02036	-	3.6.3.27	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079	412.0
DYD3_k127_3094620_0	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)	K01868	-	6.1.1.3	1.618e-301	939.0
DYD3_k127_3094620_1	cheY-homologous receiver domain	-	-	-	0.00000000000000000000007958	114.0
DYD3_k127_3102343_0	Metallopeptidase family M24	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002681	289.0
DYD3_k127_3102343_1	Metallo-beta-lactamase superfamily	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000006896	254.0
DYD3_k127_3102343_2	Belongs to the arginase family	K01476	-	3.5.3.1	0.000000000219	68.0
DYD3_k127_3107342_0	Protein of unknown function (DUF1298)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139	473.0
DYD3_k127_3107342_1	Esterase of the alpha-beta hydrolase superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004467	314.0
DYD3_k127_3107342_2	Calx-beta domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007978	298.0
DYD3_k127_3107342_3	Alpha beta hydrolase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000121	225.0
DYD3_k127_3113005_0	FAD linked oxidases, C-terminal domain	K00104	-	1.1.3.15	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007021	496.0
DYD3_k127_3113005_1	Belongs to the IlvD Edd family	K01687	-	4.2.1.9	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226	391.0
DYD3_k127_3113005_2	PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit	K01754	-	4.3.1.19	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122	369.0
DYD3_k127_3113005_3	Serine threonine protein kinase	-	-	-	0.000000000000000000000000000000000000000000000000000000815	218.0
DYD3_k127_3113005_4	Belongs to the IlvD Edd family	K01687	-	4.2.1.9	0.0000000000000000000000000000000000000001848	151.0
DYD3_k127_311703_0	TonB dependent receptor	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000867	568.0
DYD3_k127_311703_1	PFAM glycoside hydrolase, family 77	K00705	-	2.4.1.25	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364	488.0
DYD3_k127_311703_2	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans	K00975	-	2.7.7.27	0.0000000000002151	71.0
DYD3_k127_3119140_0	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	K03596	-	-	7.489e-302	933.0
DYD3_k127_3119140_1	Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA	K03215	-	2.1.1.190	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886	427.0
DYD3_k127_3119140_10	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein	K00997	-	2.7.8.7	0.0000000000000000000000002799	109.0
DYD3_k127_3119140_11	Domain of unknown function (DUF4845)	-	-	-	0.000000000000005234	81.0
DYD3_k127_3119140_12	Diguanylate cyclase	-	-	-	0.00000000000002341	83.0
DYD3_k127_3119140_13	Peptidoglycan-binding protein, CsiV	-	-	-	0.000000000001782	78.0
DYD3_k127_3119140_14	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site	K03723	-	-	0.0000002563	53.0
DYD3_k127_3119140_15	Thiol-disulfide isomerase and thioredoxins	-	-	-	0.000877	44.0
DYD3_k127_3119140_2	3'-5' exonuclease related to the exonuclease domain of PolB	K07501	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007222	369.0
DYD3_k127_3119140_3	Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides	K01207	-	3.2.1.52	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772	372.0
DYD3_k127_3119140_4	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate	K03474	-	2.6.99.2	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007964	324.0
DYD3_k127_3119140_5	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism	K03595	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428	319.0
DYD3_k127_3119140_6	Belongs to the peptidase S26 family	K03100	-	3.4.21.89	0.00000000000000000000000000000000000000000000000000000000000000000000000002983	257.0
DYD3_k127_3119140_7	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism	K03685	-	3.1.26.3	0.000000000000000000000000000000000000000000000000000000000000000003062	232.0
DYD3_k127_3119140_8	Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage	K00772	-	2.4.2.28	0.000000000000000000000000000000000000000000000000000000000000002428	226.0
DYD3_k127_3119140_9	Involved in DNA repair and RecF pathway recombination	K03584	-	-	0.0000000000000000000000000000000000000000000000000005472	197.0
DYD3_k127_312349_0	Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	K00163	-	1.2.4.1	1.856e-218	685.0
DYD3_k127_312349_1	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000237	365.0
DYD3_k127_3131293_0	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH	K02379	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000009383	271.0
DYD3_k127_3131293_1	COG1905 NADH ubiquinone oxidoreductase 24 kD subunit	K00127,K00334	-	1.6.5.3	0.00000000000000000000000005673	111.0
DYD3_k127_3131293_2	-	-	-	-	0.000000000000000002451	89.0
DYD3_k127_3136577_0	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	2.381e-318	1011.0
DYD3_k127_3136577_1	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	-	-	-	1.281e-303	946.0
DYD3_k127_3136577_2	Adenosine/AMP deaminase	K01488,K21053	-	3.5.4.2,3.5.4.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004144	463.0
DYD3_k127_3136577_3	Periplasmic component of the Tol biopolymer transport system	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087	384.0
DYD3_k127_3136577_4	COG0457 FOG TPR repeat	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044	375.0
DYD3_k127_3136577_5	COG0346 Lactoylglutathione lyase and related lyases	-	-	-	0.000000000000000000000000000000000000000000000000000000000001176	213.0
DYD3_k127_3136577_6	-acetyltransferase	K06975	-	-	0.00000000000000000000000000000001412	130.0
DYD3_k127_3136577_7	(ABC) transporter	K06147	-	-	0.00000000000000000001659	93.0
DYD3_k127_3138771_0	-	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997	330.0
DYD3_k127_3138771_1	Membrane	-	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	0.000000000000000000000000000000000000000000000000000000000001001	226.0
DYD3_k127_3138771_2	PFAM peptidase M48 Ste24p	-	-	-	0.00000000000000000000000000000000000000000000000000000000001884	219.0
DYD3_k127_3138771_3	Protein of unknown function (DUF3365)	-	-	-	0.00000000000000000000000000000000000000003216	159.0
DYD3_k127_3138771_4	-	-	-	-	0.0000000000001219	72.0
DYD3_k127_3145384_0	FAD binding domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004813	349.0
DYD3_k127_3145384_1	COG0457 FOG TPR repeat	-	-	-	0.0000000000000000000000000000000000000000002389	161.0
DYD3_k127_3145384_2	Mur ligase family, glutamate ligase domain	-	-	-	0.000000000000000000000000000000000000000005288	162.0
DYD3_k127_3151458_0	Belongs to the TPP enzyme family	K03336	-	3.7.1.22	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285	541.0
DYD3_k127_3151458_1	Uncharacterized protein conserved in bacteria (DUF2090)	K03338	-	2.7.1.92	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528	337.0
DYD3_k127_3161671_0	Fibronectin type 3 domain	-	-	-	1.631e-214	679.0
DYD3_k127_3161671_1	HipA-like C-terminal domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000006051	270.0
DYD3_k127_3161671_2	Dehydrogenase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000009405	243.0
DYD3_k127_3161671_3	Peptidase_C39 like family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000002541	223.0
DYD3_k127_316764_0	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	K02335	-	2.7.7.7	1.028e-261	820.0
DYD3_k127_3173441_0	Isocitrate dehydrogenase	-	-	-	1.235e-222	695.0
DYD3_k127_3173441_1	FAD dependent oxidoreductase	K00111	-	1.1.5.3	0.0000000000000000000000000002256	121.0
DYD3_k127_3182191_0	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)	K00762	GO:0000287,GO:0003674,GO:0003824,GO:0004588,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.4.2.10	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000573	275.0
DYD3_k127_3182191_1	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	K01520	-	3.6.1.23	0.0000000000000000000000000000000000000000000000000000000000000000001998	233.0
DYD3_k127_3182191_2	Domain of unknown function (DUF4124)	-	-	-	0.0000000000000002808	87.0
DYD3_k127_3182191_3	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine	K13038	-	4.1.1.36,6.3.2.5	0.0001562	45.0
DYD3_k127_3184767_0	COG0471 Di- and tricarboxylate transporters	-	-	-	3.078e-194	624.0
DYD3_k127_3184767_1	Belongs to the UPF0234 family	K09767	-	-	0.00000000000000000000000000000000000000000000000000000001007	203.0
DYD3_k127_3184767_2	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle	K01595	GO:0003674,GO:0003824,GO:0004611,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008964,GO:0016829,GO:0016830,GO:0016831,GO:0044424,GO:0044444,GO:0044464	4.1.1.31	0.0000000000000000000000000000000000000000000000002794	186.0
DYD3_k127_3188905_0	Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation	K11085	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051	537.0
DYD3_k127_3188905_1	Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA)	K00912	-	2.7.1.130	0.00000000000000000000000000000000000000000000000000000000000000000000000000002176	277.0
DYD3_k127_3188905_2	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria	K00979	-	2.7.7.38	0.0000000000000000000000000000000000000000000000000000000000000000001482	243.0
DYD3_k127_3193751_0	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA	K02835	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214	516.0
DYD3_k127_3193751_1	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)	K02492	-	1.2.1.70	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005488	405.0
DYD3_k127_3196505_0	PQQ-like domain	K00117	-	1.1.5.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999	544.0
DYD3_k127_3196505_1	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell	K03282	GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066	-	0.0000000000000000000000000000000000000000002966	162.0
DYD3_k127_321170_0	Sodium:solute symporter family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004019	582.0
DYD3_k127_321170_1	Esterase PHB depolymerase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000009371	271.0
DYD3_k127_321170_2	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000008152	251.0
DYD3_k127_321170_3	Alpha/beta hydrolase family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000435	252.0
DYD3_k127_3213800_1	signal transduction protein containing a membrane domain, an EAL and a GGDEF domain	-	-	-	0.000000000000000001159	96.0
DYD3_k127_3213800_2	Belongs to the glutaredoxin family. Monothiol subfamily	K07390	-	-	0.0000001097	53.0
DYD3_k127_3228550_0	Sterol-sensing domain of SREBP cleavage-activation	K07003	-	-	7.926e-286	899.0
DYD3_k127_3228550_1	Sodium:dicarboxylate symporter family	K06956	GO:0000099,GO:0000101,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006791,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015179,GO:0015184,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015811,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072337,GO:0072348,GO:0072349,GO:0098656,GO:1901682,GO:1902475,GO:1903825,GO:1905039	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006259	534.0
DYD3_k127_3228550_2	Receptor	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069	486.0
DYD3_k127_3228550_3	Bacterial extracellular solute-binding proteins, family 5 Middle	K15580	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003366	384.0
DYD3_k127_3228550_4	Outer membrane lipoprotein-sorting protein	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147	346.0
DYD3_k127_3228550_5	Protein of unknown function (DUF2892)	-	-	-	0.00000000000000000000008492	100.0
DYD3_k127_3232366_0	PFAM AMP-dependent synthetase and ligase	K00666	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556	608.0
DYD3_k127_3232366_1	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids	K00648	GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0033818,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.180	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414	455.0
DYD3_k127_3232366_2	phosphate-selective porin O and P	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227	358.0
DYD3_k127_3232366_3	Periplasmic solute binding protein	K02077	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004044	340.0
DYD3_k127_3232366_4	ABC 3 transport family	K02075	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000001289	277.0
DYD3_k127_3232366_5	TonB dependent receptor	K16092	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000003812	264.0
DYD3_k127_3232366_6	Domain of unknown function (DUF374)	-	-	-	0.0000000000000000000000000000000000000006553	158.0
DYD3_k127_3232366_7	membrane	-	-	-	0.00000000000000000000000000000000000006687	145.0
DYD3_k127_3232366_9	Protein of unknown function (DUF3108)	-	-	-	0.00004021	52.0
DYD3_k127_3237396_0	phenylacetic acid degradation protein	K02618	-	1.2.1.91,3.3.2.12	2.021e-269	845.0
DYD3_k127_3237396_1	phenylacetic acid degradation operon negative regulatory protein	K02616	GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0006082,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010124,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010817,GO:0016054,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019748,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032774,GO:0032787,GO:0034641,GO:0034645,GO:0034654,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043170,GO:0043254,GO:0043436,GO:0043565,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044282,GO:0045892,GO:0045934,GO:0046395,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098754,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141	-	0.00000000000000000003724	91.0
DYD3_k127_3240924_0	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	K03296	-	-	2.073e-207	662.0
DYD3_k127_3240924_1	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009185	297.0
DYD3_k127_3240924_2	D-arabinono-1,4-lactone oxidase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000142	261.0
DYD3_k127_3240924_3	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	K03585	-	-	0.0000000000000000000000000000000000000000000000000000000000000001193	235.0
DYD3_k127_3240924_4	Methyltransferase domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000001336	216.0
DYD3_k127_324774_0	ABC transporter	K01990	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003583	439.0
DYD3_k127_324774_1	efflux transmembrane transporter activity	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000001213	269.0
DYD3_k127_3249637_0	Involved in the TonB-independent uptake of proteins	K03641	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403	304.0
DYD3_k127_3249637_1	homoserine dehydrogenase	K12524	-	1.1.1.3,2.7.2.4	0.000000000000000000000000000000000000000000000000000000000000000000000000000002893	273.0
DYD3_k127_3249637_2	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division	-	-	-	0.000000000000000000000000000000000000000000001011	177.0
DYD3_k127_3249637_3	OmpA family	K03640	GO:0005575,GO:0005623,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032153,GO:0044425,GO:0044462,GO:0044464,GO:0051301,GO:0071944,GO:0098552	-	0.0000000000000000000000000000000000006585	145.0
DYD3_k127_325887_0	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	0.0	1504.0
DYD3_k127_325887_1	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner	K01338	-	3.4.21.53	2.985e-244	760.0
DYD3_k127_325887_2	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family	K11102	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003671	515.0
DYD3_k127_325887_3	peptidylprolyl isomerase	K03770	-	5.2.1.8	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003157	302.0
DYD3_k127_325887_4	Barrel-sandwich domain of CusB or HlyD membrane-fusion	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000647	224.0
DYD3_k127_325887_5	Bacteriocin-protection, YdeI or OmpD-Associated	-	-	-	0.000000000000000000000000000000000000000000000000000000003161	205.0
DYD3_k127_325887_6	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	K03530	-	-	0.000000000000000000000000000000000592	132.0
DYD3_k127_325887_7	-	-	-	-	0.00000000000004272	76.0
DYD3_k127_326030_0	Catalyzes cross-linking of the peptidoglycan cell wall	K05515	-	3.4.16.4	6.115e-194	624.0
DYD3_k127_326030_1	Peptidoglycan polymerase that is essential for cell wall elongation	K05837	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252	450.0
DYD3_k127_326030_2	lytic murein transglycosylase B	K08305	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009513	319.0
DYD3_k127_326030_3	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	K03642	-	-	0.000000000000000000000000000000000000000000000000000000000000000000135	239.0
DYD3_k127_326030_4	Belongs to the peptidase S11 family	K07258	-	3.4.16.4	0.0000000000000000000000000000000000000000000000000000000001183	210.0
DYD3_k127_326030_5	Involved in formation and maintenance of cell shape	K03570	-	-	0.0000000000000000000000000000000000000001959	154.0
DYD3_k127_326030_6	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins	K03571	-	-	0.0000000000000000000000000000000000002034	147.0
DYD3_k127_3262855_0	Mur ligase family, glutamate ligase domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001549	412.0
DYD3_k127_3262855_1	RimK-like ATP-grasp domain	K03802	-	6.3.2.29,6.3.2.30	0.000000000000003576	77.0
DYD3_k127_3263823_0	DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA	K03732	-	3.6.4.13	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005879	542.0
DYD3_k127_3263823_1	Belongs to the thioredoxin family	K03671	-	-	0.0000000000000000000000000000000000000000000007755	168.0
DYD3_k127_3263823_2	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template	K03628	-	-	0.0000000000000000000000000000000006751	135.0
DYD3_k127_3264281_0	LVIVD repeat	-	-	-	0.0	1070.0
DYD3_k127_3264281_1	-	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008499	566.0
DYD3_k127_3291106_0	sulfate ABC transporter	K02047	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003621	363.0
DYD3_k127_3291106_1	Sulfate ABC transporter, permease protein CysT	K02046	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008916	341.0
DYD3_k127_3291106_2	histidine kinase HAMP region domain protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007184	310.0
DYD3_k127_3291106_3	Bacterial extracellular solute-binding protein	K02048	-	-	0.00000000000000000000000000000000000000000000005045	171.0
DYD3_k127_3296831_0	LytTr DNA-binding domain	K02477	-	-	0.00000000000000000000000000000000000000000009304	169.0
DYD3_k127_3296831_1	Histidine kinase	K08082	-	2.7.13.3	0.000000000000000000000000000000000005198	151.0
DYD3_k127_3296831_2	Methyltransferase	-	-	-	0.0000000000002092	78.0
DYD3_k127_3296831_3	-	-	-	-	0.00000009953	61.0
DYD3_k127_3296831_4	cAMP biosynthetic process	-	-	-	0.0005809	42.0
DYD3_k127_3329187_0	MarC family integral membrane protein	K05595	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001186	290.0
DYD3_k127_3329187_1	Beta-lactamase class C and other penicillin binding proteins	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000003311	266.0
DYD3_k127_3329187_2	Glutathione-dependent formaldehyde-activating	-	-	-	0.000000000000000000000000000000000000000001318	161.0
DYD3_k127_3329187_3	-	-	-	-	0.00000000000000000000000006625	113.0
DYD3_k127_3329187_4	Zinc carboxypeptidase	-	-	-	0.0003504	43.0
DYD3_k127_3333200_0	zinc metalloprotease	K11749	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249	402.0
DYD3_k127_3333200_1	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	K07277	-	-	0.0000000000000000000000000000000000000000000000000000000000168	220.0
DYD3_k127_3333200_2	Belongs to the CDS family	K00981	GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.7.41	0.000000000000000000000000000000000000001921	152.0
DYD3_k127_3343562_0	Bacterial transcription activator, effector binding domain	K13652	-	-	0.000000000000000000000000000000000000000000000000000000000000000000057	241.0
DYD3_k127_3343562_1	Putative inner membrane exporter, YdcZ	K09936	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	0.00000000000000000000000000000000000000000000000000009511	190.0
DYD3_k127_3343562_2	ATP ADP translocase	K03301	-	-	0.0000000000000000000000000000000000005125	144.0
DYD3_k127_3343562_3	MAPEG family	K00799	-	2.5.1.18	0.000000000000000000000000000001337	127.0
DYD3_k127_3350599_0	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP	K03544	-	-	3.535e-219	686.0
DYD3_k127_3350599_1	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase	K03545	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138	362.0
DYD3_k127_3350599_2	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins	K01358	-	3.4.21.92	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803	317.0
DYD3_k127_3350599_3	-	-	-	-	0.0000000001311	62.0
DYD3_k127_3350599_4	-	-	-	-	0.00000174	51.0
DYD3_k127_3359943_0	Peptidase family M49	-	-	-	1.848e-222	702.0
DYD3_k127_3359943_1	isoleucyl-tRNA aminoacylation	K01870	GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.5	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005191	491.0
DYD3_k127_3359943_2	Provides the (R)-glutamate required for cell wall biosynthesis	K01776	-	5.1.1.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001389	297.0
DYD3_k127_3359943_3	Polyketide cyclase / dehydrase and lipid transport	-	-	-	0.00000000000000000000000000000000000000000000000000000000000001109	228.0
DYD3_k127_3360208_0	Arginosuccinate synthase	K01940	-	6.3.4.5	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158	389.0
DYD3_k127_3360208_1	NADH pyrophosphatase zinc ribbon domain	K03426	-	3.6.1.22	0.00000000000000000000000000000000000000000000000000000000000000000000000000000002718	279.0
DYD3_k127_3360208_2	Carboxylesterase	K06999	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000001692	265.0
DYD3_k127_3360208_3	Transport and Golgi organisation 2	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000003928	230.0
DYD3_k127_3360208_4	Regulates arginine biosynthesis genes	K03402	-	-	0.0000000000000000000281	96.0
DYD3_k127_3362001_0	FtsX-like permease family	K02004	-	-	6.508e-293	922.0
DYD3_k127_3362001_1	-	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001996	375.0
DYD3_k127_3362001_2	COG1136 ABC-type antimicrobial peptide transport system, ATPase component	K02003,K05685	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454	335.0
DYD3_k127_3362001_3	Planctomycete cytochrome C	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007054	312.0
DYD3_k127_3362001_4	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	K02005	-	-	0.0000000000000000000000000000000000000000000000000000277	197.0
DYD3_k127_3362001_5	PFAM Tetratricopeptide repeat	-	-	-	0.0000002167	64.0
DYD3_k127_3366486_0	Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system	K14058	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932	387.0
DYD3_k127_3366486_1	Belongs to the peptidase M48B family	K03799	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048	382.0
DYD3_k127_3366486_2	Belongs to the glycosyl hydrolase 13 family	K01214	-	3.2.1.68	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157	324.0
DYD3_k127_3366486_3	Belongs to the glycerate kinase type-1 family	K00865	-	2.7.1.165	0.000000000000000000000000000000000000000000000000000000000000000000000000000000004215	284.0
DYD3_k127_3366486_4	transcriptional	-	-	-	0.0000000000000000000000000000002156	126.0
DYD3_k127_3366486_5	Protein required for attachment to host cells	-	-	-	0.00000000000003838	78.0
DYD3_k127_3400219_0	C4-dicarboxylate anaerobic carrier	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587	510.0
DYD3_k127_3400219_1	translation initiation inhibitor, yjgF family	-	-	-	0.00000000000000000000000000000000000000001509	168.0
DYD3_k127_3400219_2	Dehydrogenase	-	-	-	0.0000000000000000000000000000000006283	134.0
DYD3_k127_3400219_3	Gamma-glutamyltranspeptidase	K00681	-	2.3.2.2,3.4.19.13	0.000000000000000003824	91.0
DYD3_k127_3403338_0	Protein tyrosine kinase	K12132	-	2.7.11.1	0.0000000000000000000000000000000000000000000000000000000000000000000000000005252	271.0
DYD3_k127_3403338_1	protein serine/threonine phosphatase activity	K20074	-	3.1.3.16	0.000000000000000000000000000000000000000000000000000000000006314	217.0
DYD3_k127_3403338_2	Histidine kinase	K02484,K07640,K07642	-	2.7.13.3	0.000000000000000000000000000000000000001275	155.0
DYD3_k127_3434297_0	Belongs to the citrate synthase family	K01647	-	2.3.3.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007039	606.0
DYD3_k127_3434297_1	Involved in the biosynthesis of porphyrin-containing compound	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065	340.0
DYD3_k127_3434297_2	50S ribosomal protein L31	K02909	-	-	0.0000000000000000000000000000002149	125.0
DYD3_k127_3435595_0	Xylose isomerase domain protein TIM barrel	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003347	391.0
DYD3_k127_3435595_1	fatty acid desaturase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003468	368.0
DYD3_k127_3435595_2	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)	K07862	GO:0003333,GO:0003674,GO:0005215,GO:0005283,GO:0005295,GO:0005310,GO:0005342,GO:0005343,GO:0005416,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006820,GO:0006835,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015077,GO:0015081,GO:0015171,GO:0015175,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015370,GO:0015672,GO:0015711,GO:0015804,GO:0015849,GO:0016020,GO:0016021,GO:0017153,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0032329,GO:0034220,GO:0035725,GO:0044425,GO:0044464,GO:0046873,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1903825,GO:1905039	-	0.00000000000000000000000000000000000000000000000000009156	202.0
DYD3_k127_3435595_3	Belongs to the P(II) protein family	K04751,K04752	-	-	0.000000000000000000000000000000000000000000003001	168.0
DYD3_k127_3435595_4	helix_turn_helix, Lux Regulon	-	-	-	0.000000000000000000000000000000000000009425	155.0
DYD3_k127_3439721_0	PFAM Dienelactone hydrolase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002842	289.0
DYD3_k127_3439721_1	Pyridoxal-dependent decarboxylase conserved domain	-	-	-	0.00000000000000000000000000000000000000000000000000000001285	203.0
DYD3_k127_3439721_2	Adenylate cyclase	-	-	-	0.00006735	46.0
DYD3_k127_345517_0	fatty-acyl-CoA reductase (alcohol-forming) activity	K01007,K18845	-	2.1.1.179,2.7.9.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288	565.0
DYD3_k127_345517_1	Methyltransferase domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804	378.0
DYD3_k127_345517_2	COG0574 Phosphoenolpyruvate synthase pyruvate phosphate dikinase	K01007,K21787	GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016999,GO:0017000,GO:0017144,GO:0044237,GO:0044249	2.7.9.2	0.00000000000000000000000000000000000000000000000004915	184.0
DYD3_k127_345517_3	Acyl-transferase	K00655	-	2.3.1.51	0.00000000000000000000007987	111.0
DYD3_k127_3466762_0	PFAM Phosphotransferase enzyme family	K07102	-	2.7.1.221	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941	341.0
DYD3_k127_3466762_1	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon)	K00966,K00992	GO:0000166,GO:0000270,GO:0000287,GO:0001882,GO:0001884,GO:0002134,GO:0003674,GO:0003824,GO:0005488,GO:0006022,GO:0006040,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009254,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0019103,GO:0019752,GO:0030203,GO:0032549,GO:0032551,GO:0032553,GO:0032557,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044281,GO:0046872,GO:0070569,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901564	2.7.7.13,2.7.7.99	0.0000000000000000000000000000000000002209	149.0
DYD3_k127_3466762_2	Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane	K04744	-	-	0.0000000000000000000000000006758	122.0
DYD3_k127_3468896_0	PFAM major facilitator superfamily MFS_1	K16211	-	-	4.462e-208	657.0
DYD3_k127_3468896_1	LacI family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005551	392.0
DYD3_k127_3468896_2	Glycosyl-hydrolase 97 N-terminal	K01187	-	3.2.1.20	0.00000000000000000000000000000000000000000000000000000000000000000000000005541	252.0
DYD3_k127_3468896_3	Belongs to the bacterial glucokinase family	K00845	GO:0003674,GO:0003824,GO:0004340,GO:0004396,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019200,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0051156,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576	2.7.1.2	0.0000000000000000000000000000000000000000000000000000000000007022	222.0
DYD3_k127_3468896_4	amine oxidase	K00274	-	1.4.3.4	0.0000000002074	66.0
DYD3_k127_3493482_0	AAA domain (dynein-related subfamily)	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006675	363.0
DYD3_k127_3493482_1	CO dehydrogenase flavoprotein C-terminal domain	K03519	-	1.2.5.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054	317.0
DYD3_k127_3493482_2	[2Fe-2S] binding domain	K03518	-	1.2.5.3	0.00000000000000000000000000000000000000000000000000000000000000000000000006393	252.0
DYD3_k127_3493482_3	Carbon monoxide dehydrogenase subunit G	K09386	-	-	0.00000000000000000000000000000000000000000000000004319	184.0
DYD3_k127_3493482_4	Belongs to the thioredoxin family	K03671	-	-	0.00000000000000000000000000000000000002012	148.0
DYD3_k127_3493482_5	VWA domain containing CoxE-like protein	K07161	-	-	0.00000000003635	64.0
DYD3_k127_3493482_6	PFAM Methylenetetrahydrofolate reductase	K00297,K00547	-	1.5.1.20,2.1.1.10	0.000000000301	62.0
DYD3_k127_3506116_0	Belongs to the ClpA ClpB family	K03694	GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043335,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564	-	4.079e-232	727.0
DYD3_k127_3506116_1	secretion system protein	K02453	-	-	0.00000000000000000000000000000000000000000000214	170.0
DYD3_k127_3506116_2	Type II secretion system protein C	-	-	-	0.000000000000000000000000000000000000000000009618	175.0
DYD3_k127_3506116_3	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation	K06891	-	-	0.0000000000000000000000000000000000000002785	151.0
DYD3_k127_3519210_0	Peptidase m28	-	-	-	2.678e-201	643.0
DYD3_k127_3519210_1	amino acid	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003649	472.0
DYD3_k127_3519210_2	COG0277 FAD FMN-containing dehydrogenases	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003308	386.0
DYD3_k127_3519210_3	membrane	-	-	-	0.000000000926	63.0
DYD3_k127_3524292_0	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	K18138	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143	491.0
DYD3_k127_3524292_1	Flavin containing amine oxidoreductase	K00274	-	1.4.3.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007264	473.0
DYD3_k127_3524292_2	-	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156	385.0
DYD3_k127_3524292_3	von Willebrand factor (vWF) type A domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000007376	254.0
DYD3_k127_3524292_4	sterol desaturase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000001094	233.0
DYD3_k127_3524292_5	Domain of unknown function (DUF5062)	-	-	-	0.0000000000000000000002182	98.0
DYD3_k127_352892_0	type IV pilus secretin PilQ	K02666	-	-	3.422e-209	672.0
DYD3_k127_352892_1	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate	K00891	GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615	2.7.1.71	0.00000000000000000000000000000000000000000000000000000000000209	213.0
DYD3_k127_352892_2	pilus assembly protein PilP	K02665	-	-	0.000000000000000000000000000000000000000000006113	168.0
DYD3_k127_3540560_0	Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source	K01505	-	3.5.99.7	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696	595.0
DYD3_k127_3540560_1	Aminotransferase class-V	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000002122	242.0
DYD3_k127_3546341_0	4-hydroxyphenylacetate 3-hydroxylase C terminal	-	-	-	1.73e-246	774.0
DYD3_k127_3546341_1	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737	377.0
DYD3_k127_3546341_2	MaoC like domain	-	-	-	0.0000000000000000000000000000000000000000000000001027	181.0
DYD3_k127_3546341_3	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation	K00626	-	2.3.1.9	0.00000000000000001238	84.0
DYD3_k127_3546341_4	abc transporter	K06158	-	-	0.000006097	50.0
DYD3_k127_3549496_0	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family	K14393	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206	465.0
DYD3_k127_3549496_1	TIGRFAM cation diffusion facilitator family transporter	K16264	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151	319.0
DYD3_k127_3571314_0	Putative neutral zinc metallopeptidase	K07054	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723	339.0
DYD3_k127_3571314_1	Bacterial regulatory proteins, tetR family	-	-	-	0.000000000000000000000000000000000000003051	153.0
DYD3_k127_3571314_2	-	-	-	-	0.000006057	57.0
DYD3_k127_3572083_0	Amidohydrolase	K07045,K14333,K20941	-	4.1.1.103,4.1.1.46	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003989	435.0
DYD3_k127_3572083_1	Transcriptional regulator	K18301	-	-	0.00000000000000002753	89.0
DYD3_k127_3572083_2	Transcriptional regulator, AraC family	-	-	-	0.00000000001457	71.0
DYD3_k127_360856_0	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs	K12573	-	-	2.273e-235	749.0
DYD3_k127_360856_1	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	K02314	-	3.6.4.12	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269	594.0
DYD3_k127_360856_10	Binds together with S18 to 16S ribosomal RNA	K02990	-	-	0.00000000000000000000000000000000000000000000001583	175.0
DYD3_k127_360856_11	binds to the 23S rRNA	K02939	-	-	0.00000000000000000000000000000000000000000000005587	173.0
DYD3_k127_360856_12	cytochrome C assembly protein	-	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	0.00000000000000000000000000000000000008042	152.0
DYD3_k127_360856_13	Ribonucleotide reductase, barrel domain	K00525	-	1.17.4.1	0.0000000000000000000000000000000005939	135.0
DYD3_k127_360856_14	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	K02963	-	-	0.0000000000000000000000000000000037	129.0
DYD3_k127_360856_15	membrane	-	-	-	0.0000006916	61.0
DYD3_k127_360856_2	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function	K04485	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005653	495.0
DYD3_k127_360856_3	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	K03106	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006605,GO:0006612,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0048500,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904	3.6.5.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064	469.0
DYD3_k127_360856_4	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids	K01775	-	5.1.1.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772	344.0
DYD3_k127_360856_5	Protein tyrosine kinase	K12132	-	2.7.11.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002065	341.0
DYD3_k127_360856_6	phosphatase	K20074	-	3.1.3.16	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003688	285.0
DYD3_k127_360856_7	cAMP phosphodiesterases class-II	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000003743	258.0
DYD3_k127_360856_8	(FHA) domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000001911	228.0
DYD3_k127_360856_9	Specifically methylates the ribose of guanosine 2251 in 23S rRNA	K03218	-	2.1.1.185	0.000000000000000000000000000000000000000000000000000000000003215	218.0
DYD3_k127_3618792_0	Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	K02667	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811	510.0
DYD3_k127_3618792_1	Histidine kinase	K02668	-	2.7.13.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611	387.0
DYD3_k127_3618792_2	Belongs to the N-Me-Phe pilin family	K02650	-	-	0.0000000000000000005871	87.0
DYD3_k127_3623179_0	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner	K01873	-	6.1.1.9	0.0	1276.0
DYD3_k127_3623179_1	associated with various cellular activities	K03924	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006101	358.0
DYD3_k127_3623179_2	conserved protein (some members contain a von Willebrand factor type A (vWA) domain)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000008325	238.0
DYD3_k127_3623179_3	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides	K01255	GO:0001073,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004177,GO:0005488,GO:0006139,GO:0006259,GO:0006276,GO:0006310,GO:0006351,GO:0006355,GO:0006508,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009056,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016787,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042150,GO:0043170,GO:0043171,GO:0043244,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1903506,GO:2000112,GO:2001141	3.4.11.1	0.0000000000000000000000000000000003143	133.0
DYD3_k127_3623179_4	DNA polymerase III, chi subunit	K02339	-	2.7.7.7	0.00000000000000000000000000000003567	132.0
DYD3_k127_3623179_5	Transglutaminase/protease-like homologues	K22452	-	2.3.2.13	0.00000000000000000000000000000009362	136.0
DYD3_k127_3626066_0	COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains	K07715	GO:0000156,GO:0000160,GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001130,GO:0001150,GO:0001151,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0035556,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060089,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004766	512.0
DYD3_k127_3626066_1	Belongs to the NAD(P)-dependent epimerase dehydratase family	K01784,K12448	-	5.1.3.2,5.1.3.5	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007441	362.0
DYD3_k127_3626066_2	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain	K07711	-	2.7.13.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375	364.0
DYD3_k127_3630278_0	COG0793 Periplasmic protease	-	-	-	1.193e-194	622.0
DYD3_k127_3630278_1	Peptidase dimerisation domain	K01439,K13049	-	3.5.1.18	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007991	535.0
DYD3_k127_3630278_2	carboxylic ester hydrolase activity	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005922	291.0
DYD3_k127_3630278_3	Rhomboid family	-	-	-	0.0000000000000000000000000000000000000000000000000001177	193.0
DYD3_k127_3630278_4	Type III secretion system lipoprotein chaperone (YscW)	K09914	-	-	0.00000000000000002458	87.0
DYD3_k127_3630791_0	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	K02434	-	6.3.5.6,6.3.5.7	4.698e-214	674.0
DYD3_k127_3630791_1	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)	K02433	-	6.3.5.6,6.3.5.7	1.327e-206	652.0
DYD3_k127_3630791_2	TIGRFAM Cell shape determining protein MreB Mrl	K03569	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008906	559.0
DYD3_k127_3630791_3	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress	K04083	-	-	0.000000000000000000000000000000000000000000000000000000000003579	222.0
DYD3_k127_3630791_4	Involved in formation and maintenance of cell shape	K03570	-	-	0.000000000000000000000000000000000000000000000007177	178.0
DYD3_k127_3630791_5	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)	K02435	-	6.3.5.6,6.3.5.7	0.00000000000000000000001723	103.0
DYD3_k127_3632590_0	COG0457 FOG TPR repeat	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024	445.0
DYD3_k127_3632590_1	PQQ-like domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107	308.0
DYD3_k127_3632590_2	Aspartyl/Asparaginyl beta-hydroxylase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000002038	245.0
DYD3_k127_3645076_0	homoserine dehydrogenase	K12524	-	1.1.1.3,2.7.2.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921	372.0
DYD3_k127_3645076_1	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate	K00872	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004413,GO:0006082,GO:0006520,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009088,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.1.39	0.0000000000000000000000000000000000000000000000000000000003567	215.0
DYD3_k127_3646494_0	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids	K00648	-	2.3.1.180	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754	445.0
DYD3_k127_3646494_1	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA	K03621	-	2.3.1.15	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263	360.0
DYD3_k127_3646494_2	PFAM ErfK YbiS YcfS YnhG family protein	K16291	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027	309.0
DYD3_k127_3646494_3	Glutathione S-transferase	K00799	-	2.5.1.18	0.00000000000000000000000000000000000000000000000000000000000000000000007302	245.0
DYD3_k127_3646494_4	Maf-like protein	-	-	-	0.00000000000000000000000000000000000000000000007762	174.0
DYD3_k127_3646494_5	Protein of unknown function (DUF1232)	-	-	-	0.00000000000000000000000000000001774	138.0
DYD3_k127_3646494_6	Belongs to the bacterial ribosomal protein bL32 family	K02911	-	-	0.00000000000000000000009411	98.0
DYD3_k127_3646494_7	Uncharacterized ACR, COG1399	K07040	-	-	0.0000000023	65.0
DYD3_k127_3646494_8	(Lipo)protein	-	-	-	0.0001307	48.0
DYD3_k127_3655113_0	Hydroxymethylglutaryl-coenzyme A reductase	K00054	-	1.1.1.88	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261	438.0
DYD3_k127_3655113_1	NUDIX domain	K01823	-	5.3.3.2	0.000000000000000000000000000000000000000000000000000000000000000000001278	241.0
DYD3_k127_3655113_2	synthase	K01641,K15311	-	2.3.3.10	0.000000000000000000000000000000000000000000002221	169.0
DYD3_k127_3657931_0	FMN binding	K00104,K16422	-	1.1.3.15,1.1.3.46	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003703	318.0
DYD3_k127_3657931_1	DinB superfamily	-	-	-	0.000000000000000000000000000000000000000000008736	168.0
DYD3_k127_3658722_0	Haem-degrading	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577	603.0
DYD3_k127_3658722_1	Cytochrome c3	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003191	286.0
DYD3_k127_366244_0	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome	K02355	-	-	0.0	1153.0
DYD3_k127_366244_1	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA	K02992	-	-	0.000000000000000000000000000000000000000000000000000000000000000002487	229.0
DYD3_k127_366244_2	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit	K02950	GO:0000372,GO:0000375,GO:0000376,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015935,GO:0016070,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0032991,GO:0033120,GO:0034336,GO:0034337,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904	-	0.000000000000000000000000000000000000000000000000000000000000000006124	228.0
DYD3_k127_366244_3	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis	K02358	-	-	0.000000007852	57.0
DYD3_k127_3669908_0	COG1629 Outer membrane receptor proteins, mostly Fe transport	K02014	-	-	2.536e-301	943.0
DYD3_k127_3669908_1	Sulfotransferase domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392	378.0
DYD3_k127_3669908_2	Mn2 and Fe2 transporters of the NRAMP family	-	-	-	0.00000000000000000000000000000000000000000000006939	179.0
DYD3_k127_3672120_0	Aminotransferase class-V	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000336	460.0
DYD3_k127_3693187_0	TonB-dependent Receptor Plug Domain	-	-	-	4.425e-305	957.0
DYD3_k127_3693187_1	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL	K07303	-	1.3.99.16	2.212e-238	758.0
DYD3_k127_3693187_2	beta-hydroxylase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334	427.0
DYD3_k127_3693187_3	Aerobic-type carbon monoxide dehydrogenase small subunit CoxS	K07302	-	1.3.99.16	0.000000000000000000000000000000000000000000000000000000000000001238	223.0
DYD3_k127_3716193_0	Peptidase S9, prolyl oligopeptidase, catalytic domain	K01354	-	3.4.21.83	4.805e-201	644.0
DYD3_k127_3716193_1	Belongs to the UPF0502 family	K09915	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464	-	0.00000000000000000000000000000000000000000000000000000000000000002715	230.0
DYD3_k127_3716193_2	FAD dependent oxidoreductase	-	-	-	0.000000000000000000000000000000000000000000000000000000007969	203.0
DYD3_k127_3716193_3	-	-	-	-	0.000000000000000000000000000008475	126.0
DYD3_k127_3719592_0	Phospholipase D. Active site motifs.	K06131	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000003097	284.0
DYD3_k127_3719592_1	Protein of unknown function (DUF2799)	-	-	-	0.00000000000000000000000000000000000003467	151.0
DYD3_k127_3719592_2	COG0575 CDP-diglyceride synthetase	-	-	-	0.0000000000000000000000003578	113.0
DYD3_k127_3719592_3	-	-	-	-	0.000000000004748	73.0
DYD3_k127_3719592_4	Nuclease-related domain	-	-	-	0.0000000008874	69.0
DYD3_k127_3727556_0	Lysin motif	K08307	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558	554.0
DYD3_k127_3727556_1	Succinylglutamate desuccinylase / Aspartoacylase family	K06987	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184	434.0
DYD3_k127_3727556_2	Lipid A biosynthesis	K02517	-	2.3.1.241	0.000000000000000000000000000000000000000000000000000000000000000000000000000001674	273.0
DYD3_k127_3727556_3	Catalyzes the ATP-dependent phosphorylation of the 3- deoxy-D-manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position	K11211	-	2.7.1.166	0.000000000000000000000000000000000000000000001124	174.0
DYD3_k127_3732193_0	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring	K03590	-	-	3.338e-213	667.0
DYD3_k127_3732193_1	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity	K03531	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003194	516.0
DYD3_k127_3732193_2	Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis	K02535	-	3.5.1.108	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153	448.0
DYD3_k127_3732193_3	Cell wall formation	K00075	-	1.3.1.98	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006472	339.0
DYD3_k127_3732193_4	Belongs to the D-alanine--D-alanine ligase family	K01921	-	6.3.2.4	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315	319.0
DYD3_k127_3732193_5	Belongs to the MurCDEF family	K01924	GO:0000166,GO:0000270,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0035639,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0046872,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576	6.3.2.8	0.000000000000000000000000000000000000000004087	157.0
DYD3_k127_3732193_6	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly	K03589	-	-	0.00000000000000000000000000000000000001144	156.0
DYD3_k127_3732193_7	Protein of unknown function (DUF721)	-	-	-	0.0001155	49.0
DYD3_k127_3735062_0	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane	K03070	-	-	0.0	1077.0
DYD3_k127_3735062_1	TIGRFAM type IV-A pilus assembly ATPase PilB	K02652	-	-	2.041e-228	721.0
DYD3_k127_3735062_2	PFAM Type II secretion system F domain	K02653	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893	523.0
DYD3_k127_3735062_3	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue	K02654	-	3.4.23.43	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004516	360.0
DYD3_k127_3735062_4	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity	K18778	GO:0000003,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007049,GO:0008150,GO:0009987,GO:0019954,GO:0022402,GO:0022414,GO:0032153,GO:0032505,GO:0042802,GO:0043093,GO:0044424,GO:0044444,GO:0044464,GO:0051301	-	0.00000000000000000000000000000000000000000000000000000000004531	214.0
DYD3_k127_3735062_5	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A	K00859	GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.1.24	0.00000000000000000000000000000000000000000000000009745	185.0
DYD3_k127_3735062_6	Pilin (bacterial filament)	K02650,K02655	-	-	0.000000000000000000000000000000000001439	145.0
DYD3_k127_3735062_7	Belongs to the N-Me-Phe pilin family	K02650	-	-	0.0000000000000000000000000000000001629	136.0
DYD3_k127_3735062_8	Belongs to the Nudix hydrolase family	K03574	-	3.6.1.55	0.00000000000000000000000000001289	126.0
DYD3_k127_3735392_0	Fe2 -dicitrate sensor, membrane component	K07165	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008065	288.0
DYD3_k127_3735392_1	receptor	-	-	-	0.0000000000000000003965	94.0
DYD3_k127_3752411_0	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides	K01255	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564	3.4.11.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422	489.0
DYD3_k127_3752411_1	aldo keto reductase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001007	302.0
DYD3_k127_3752411_2	ATP ADP translocase	K03301	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000008924	272.0
DYD3_k127_3752411_3	permease	K07091	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000005153	265.0
DYD3_k127_3752411_4	Permease YjgP YjgQ	K11720	-	-	0.000000000000000000000000000000000000000000000000000001124	209.0
DYD3_k127_3752411_5	pfam rdd	-	-	-	0.0000000000000000000000000000000002512	136.0
DYD3_k127_3752411_6	DNA polymerase III chi subunit, HolC	K02339	-	2.7.7.7	0.0000002415	58.0
DYD3_k127_3779075_0	NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468	317.0
DYD3_k127_3779075_1	Polyketide cyclase / dehydrase and lipid transport	-	-	-	0.000000000000000000000000000000000000000188	156.0
DYD3_k127_3779075_2	proteolysis	-	-	-	0.000000000000000000000000000305	122.0
DYD3_k127_3779075_3	PFAM NUDIX hydrolase	-	-	-	0.0005907	48.0
DYD3_k127_3786998_0	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia	K01657,K13503	-	4.1.3.27	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204	403.0
DYD3_k127_3786998_1	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)	K00766	-	2.4.2.18	0.0000000000000000000000000000000000000000000000000000000000000000000007483	258.0
DYD3_k127_3786998_2	TIGRFAM glutamine amidotransferase of anthranilate synthase	K01658,K01664	-	2.6.1.85,4.1.3.27	0.000000000000000000000000000000000000000000000000000000000000000001235	240.0
DYD3_k127_3786998_3	Indole-3-glycerol phosphate synthase	K01609	GO:0000162,GO:0000287,GO:0003674,GO:0003824,GO:0004425,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016020,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043167,GO:0043169,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046219,GO:0046391,GO:0046394,GO:0046483,GO:0046872,GO:0071704,GO:0071944,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.1.1.48	0.00000000000000000008238	103.0
DYD3_k127_3786998_4	COG0471 Di- and tricarboxylate transporters	-	-	-	0.0000000000000003467	78.0
DYD3_k127_3815650_0	Belongs to the thiolase family	K00626	-	2.3.1.9	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713	498.0
DYD3_k127_3815650_1	Belongs to the short-chain dehydrogenases reductases (SDR) family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007368	314.0
DYD3_k127_3815650_2	Phosphate acyltransferases	-	-	-	0.00000000000000000000000000000000000000002592	160.0
DYD3_k127_3818527_0	COG1629 Outer membrane receptor proteins, mostly Fe transport	K02014	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005357	536.0
DYD3_k127_3818527_1	phosphatase	K01113	-	3.1.3.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233	359.0
DYD3_k127_3818527_2	EcsC protein family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006262	292.0
DYD3_k127_3837541_0	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP	K02837	-	-	4.206e-250	781.0
DYD3_k127_3837541_1	Major facilitator superfamily	K06902	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009679	380.0
DYD3_k127_3849759_0	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide	K04656	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137	595.0
DYD3_k127_3849759_1	AIR synthase related protein, N-terminal domain	K04655	GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0018193,GO:0018198,GO:0018249,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046892,GO:0051604,GO:0071704,GO:1901564	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143	461.0
DYD3_k127_3849759_2	AAA domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008096	316.0
DYD3_k127_38511_0	PTS system, N-acetylglucosamine-specific	K02803,K02804	-	2.7.1.193	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003435	616.0
DYD3_k127_38511_1	PTS system, glucose subfamily, IIA	K11189	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118	574.0
DYD3_k127_38511_2	-	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003233	506.0
DYD3_k127_38511_3	Transcriptional regulator	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527	496.0
DYD3_k127_38511_4	MAPEG family	-	-	-	0.0000000000000000000000000000000000000000000000000000000007547	206.0
DYD3_k127_385751_0	Phosphoenolpyruvate phosphomutase	-	-	-	3.674e-200	631.0
DYD3_k127_385751_1	Protein of unknown function (DUF3612)	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000002637	256.0
DYD3_k127_385751_2	Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation	K00906	GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004721,GO:0005488,GO:0005524,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008772,GO:0009987,GO:0016208,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0042578,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050790,GO:0065007,GO:0065009,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564	2.7.11.5	0.000000000000000001307	90.0
DYD3_k127_3918615_0	Insulinase (Peptidase family M16)	K07263	-	-	0.000000000000000000000000000000000000000000000000000000000000000001186	249.0
DYD3_k127_3918615_1	Flavin containing amine oxidoreductase	-	-	-	0.000000000000000000000000000000000000000000000000000000004675	201.0
DYD3_k127_3923225_0	UvrD/REP helicase N-terminal domain	K03657	-	3.6.4.12	1.28e-242	770.0
DYD3_k127_3923225_1	COG0471 Di- and tricarboxylate transporters	-	-	-	7.411e-228	734.0
DYD3_k127_3923225_2	PFAM Alcohol dehydrogenase zinc-binding domain protein	K00344	-	1.6.5.5	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009137	388.0
DYD3_k127_3923225_3	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004072	308.0
DYD3_k127_3923225_4	Serine aminopeptidase, S33	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000002632	251.0
DYD3_k127_3923225_5	Pyridine nucleotide-disulphide oxidoreductase	K00529,K16968	-	1.14.13.111,1.18.1.3	0.00000000000000000000000000000000000000000000000000000000000000000000005078	248.0
DYD3_k127_3948017_0	Histidine kinase	K07646	-	2.7.13.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007205	352.0
DYD3_k127_3948017_1	response regulator	K07667	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009878	277.0
DYD3_k127_3948017_2	Trk system potassium uptake protein	K03498	-	-	0.00000005669	59.0
DYD3_k127_3948521_0	PFAM Aminotransferase class I and II	K00812	-	2.6.1.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000457	488.0
DYD3_k127_3948521_1	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage	K03702	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009380,GO:0009628,GO:0032991,GO:0042802,GO:0044424,GO:0044464,GO:0050896,GO:1902494,GO:1905347,GO:1905348,GO:1990391	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007336	392.0
DYD3_k127_395088_0	Peptidase M16	-	-	-	0.0	1105.0
DYD3_k127_395088_1	COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases	K15022	-	1.17.1.10	7.122e-289	896.0
DYD3_k127_395088_2	pyruvate flavodoxin ferredoxin oxidoreductase	K00174	-	1.2.7.11,1.2.7.3	5.202e-258	807.0
DYD3_k127_395088_3	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA	K01754	-	4.3.1.19	6.456e-211	666.0
DYD3_k127_395088_4	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides	K01465	-	3.5.2.3	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605	560.0
DYD3_k127_395088_5	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	K00175	-	1.2.7.11,1.2.7.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055	467.0
DYD3_k127_395088_6	Belongs to the peptidase S33 family	K01259	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464	3.4.11.5	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043	439.0
DYD3_k127_395088_7	NAD dependent epimerase/dehydratase family	K05281	-	1.3.1.45	0.0000000000000000001024	92.0
DYD3_k127_3951520_0	Protein of unknown function (DUF2891)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001549	467.0
DYD3_k127_3951520_1	Mycolic acid cyclopropane synthetase	K00574	-	2.1.1.79	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307	441.0
DYD3_k127_3951520_2	geranylgeranyl reductase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002889	414.0
DYD3_k127_3951520_3	Metallo-beta-lactamase superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000001016	274.0
DYD3_k127_3951520_4	Belongs to the universal stress protein A family	-	-	-	0.0000000000000000000000000000000001127	143.0
DYD3_k127_3951520_5	deoxyribonuclease I	-	-	-	0.0000002613	61.0
DYD3_k127_3964052_0	N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity	-	-	-	0.0000000000000000000000000000000000000000000000000000000001301	214.0
DYD3_k127_3964052_1	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	0.000000000000000000000000000000000000000000000000007994	193.0
DYD3_k127_3964052_2	NADP oxidoreductase coenzyme F420-dependent	K06988	-	1.5.1.40	0.0000000000000000000000000000005282	135.0
DYD3_k127_3964052_3	Bacterial regulatory helix-turn-helix protein, lysR family	K03576	-	-	0.0000000000000000000000000001415	119.0
DYD3_k127_3965686_0	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate	K01681	-	4.2.1.3	0.0	1208.0
DYD3_k127_3965686_1	Threonine synthase	K01733	-	4.2.3.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004958	440.0
DYD3_k127_3965686_2	protein conserved in bacteria	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003397	375.0
DYD3_k127_3965686_3	ABC-2 family transporter protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008038	361.0
DYD3_k127_3965686_4	AAA domain, putative AbiEii toxin, Type IV TA system	K01990	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203	346.0
DYD3_k127_3965686_5	Preprotein translocase subunit TatD	K03424	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000416	306.0
DYD3_k127_3965686_6	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate	K00872	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004413,GO:0006082,GO:0006520,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009088,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.1.39	0.00000000000000000000000000000000000000000000000000000000000000001163	236.0
DYD3_k127_3965686_7	WLM domain	K07043	-	-	0.000000000000000000000000000000000000000004784	165.0
DYD3_k127_3965686_8	-	-	-	-	0.000000000000000000000000000006413	129.0
DYD3_k127_3965686_9	NERD domain protein	-	-	-	0.00000000000000002022	91.0
DYD3_k127_3968083_0	TonB dependent receptor	-	-	-	1.1e-224	720.0
DYD3_k127_3968083_1	AMP-binding enzyme C-terminal domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000173	298.0
DYD3_k127_3968083_2	COG1309 Transcriptional regulator	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000002113	235.0
DYD3_k127_3968083_3	AMP-binding enzyme	K00666	-	-	0.0000000000000000000000001352	123.0
DYD3_k127_3968083_4	Dicarboxylate transport	-	-	-	0.000000000000004013	90.0
DYD3_k127_4001754_0	Carbohydrate family 9 binding domain-like	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355	417.0
DYD3_k127_4001754_1	COG1194 A G-specific DNA glycosylase	K03575	GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002485	398.0
DYD3_k127_4001754_2	PFAM AsmA family protein	K07289	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045	338.0
DYD3_k127_4001754_3	Protein of unknown function (DUF1428)	-	-	-	0.00000000000000000000000000000000000000000000000000000003427	198.0
DYD3_k127_4001754_4	Polyketide cyclase / dehydrase and lipid transport	-	-	-	0.0000000000000000006931	94.0
DYD3_k127_4001754_5	-	-	-	-	0.0000000004529	70.0
DYD3_k127_4001754_6	-	-	-	-	0.000002407	57.0
DYD3_k127_4001819_0	Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group	K02257	-	2.5.1.141	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002636	367.0
DYD3_k127_4001819_1	COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	K03088	-	-	0.00000000000000000000000000000123	129.0
DYD3_k127_4001819_2	Putative zinc-finger	-	-	-	0.00000000000000000000000006623	115.0
DYD3_k127_4001819_3	signal sequence binding	-	-	-	0.000000000000000000000002997	109.0
DYD3_k127_4001819_4	SURF1 family	-	-	-	0.000000000000003214	79.0
DYD3_k127_402197_0	Nucleotidyltransferase DNA polymerase involved in DNA repair	K14161	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000141	295.0
DYD3_k127_402197_1	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	K01356	-	3.4.21.88	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008339	277.0
DYD3_k127_402197_2	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	K14162	-	2.7.7.7	0.00000000000000000000000000000000000000000000000000000000000003629	223.0
DYD3_k127_402197_3	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division	K13053,K14160	-	-	0.000000000000000000000000000000000000000000000000004937	188.0
DYD3_k127_402197_4	Adenylyl- / guanylyl cyclase, catalytic domain	K01768	-	4.6.1.1	0.000000000000000000002371	99.0
DYD3_k127_4031730_0	ATPase activity	K02045	-	3.6.3.25	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093	399.0
DYD3_k127_4031730_1	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	K02005	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000855	361.0
DYD3_k127_4031730_2	Bacterial extracellular solute-binding protein	K02048	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003634	349.0
DYD3_k127_4031730_3	Phosphate-selective porin O and P	K07221	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004272	297.0
DYD3_k127_4031730_4	monooxygenase activity	-	-	-	0.000000000000000000000000000000000000000000001085	170.0
DYD3_k127_4031730_5	-	-	-	-	0.00000000000000000000000000001124	124.0
DYD3_k127_4031730_6	-	-	-	-	0.000000000000004764	81.0
DYD3_k127_4031730_7	-	-	-	-	0.000000000000005022	87.0
DYD3_k127_4031730_8	-	-	-	-	0.000000000533	66.0
DYD3_k127_4031730_9	-	-	-	-	0.0006794	49.0
DYD3_k127_403663_0	Belongs to the GPAT DAPAT family	K00631	-	2.3.1.15	6.006e-226	726.0
DYD3_k127_403663_1	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000009965	222.0
DYD3_k127_403663_2	Belongs to the UPF0176 family	K07146	-	-	0.00000000000000000000000000000000000001151	151.0
DYD3_k127_403663_3	-	-	-	-	0.0000000000000000000002137	103.0
DYD3_k127_403663_4	-	-	-	-	0.0000000000000000002219	91.0
DYD3_k127_4042298_0	Belongs to the pirin family	K06911	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005105	343.0
DYD3_k127_4042298_1	Methyltransferase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782	302.0
DYD3_k127_4042298_2	K -dependent Na Ca	K07301	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000879	280.0
DYD3_k127_4049187_0	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine	K00013	GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.1.1.23	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433	459.0
DYD3_k127_4049187_1	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity	K00765	GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.4.2.17	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005517	322.0
DYD3_k127_4049187_2	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily	K00817	-	2.6.1.9	0.0000000000000000000000000000000000000000000000000000000001501	215.0
DYD3_k127_4049187_3	protein, YerC YecD	-	-	-	0.0000000004652	61.0
DYD3_k127_4058093_0	Part of a membrane complex involved in electron transport	K03615	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437	459.0
DYD3_k127_4058093_1	Part of a membrane complex involved in electron transport	K03614	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006818	381.0
DYD3_k127_4058093_2	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate	K10773	-	4.2.99.18	0.000000000000000000000000000000000000000000000000000000000000000000000000000008459	263.0
DYD3_k127_4058093_3	Part of a membrane complex involved in electron transport	K03613	-	-	0.0000000000000000000000000000000000000000000000000000000000000000004851	237.0
DYD3_k127_4058093_4	Part of a membrane complex involved in electron transport	K03612	-	-	0.000000000000000000000000000000000000000000000000000471	199.0
DYD3_k127_4058093_5	Part of a membrane complex involved in electron transport	K03616	-	-	0.00000000000000000000000000000000000000000000000002302	183.0
DYD3_k127_407435_0	Prolyl oligopeptidase family	-	-	-	3.4e-258	812.0
DYD3_k127_407435_1	Peptidase family M3	K01392	-	3.4.24.15	2.008e-199	643.0
DYD3_k127_4087951_0	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit	K01903	GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350	6.2.1.5	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006293	529.0
DYD3_k127_4087951_1	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit	K01902	-	6.2.1.5	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003842	438.0
DYD3_k127_4087951_2	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source	K01916,K01950	-	6.3.1.5,6.3.5.1	0.000000000000000000000002994	105.0
DYD3_k127_4111740_0	Outer membrane protein protective antigen OMA87	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339	315.0
DYD3_k127_4111740_1	COG0457 FOG TPR repeat	-	-	-	0.0000000000000000000000000000000000000000000000006911	181.0
DYD3_k127_4111740_2	COG1226 Kef-type K transport systems	-	-	-	0.00000000000000000000000000000000000001553	148.0
DYD3_k127_4111740_3	Surface antigen	-	-	-	0.00000000000000000000000000000000247	132.0
DYD3_k127_4128603_0	Dehydrogenase	K00101,K15054	-	1.1.2.3,1.1.99.31	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962	512.0
DYD3_k127_4128603_1	Cytochrome C and Quinol oxidase polypeptide I	K04561	-	1.7.2.5	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001	329.0
DYD3_k127_4128603_2	Conserved hypothetical protein 698	-	-	-	0.00000000000000000000000000000000000000000000000000009206	205.0
DYD3_k127_4132674_0	transcriptional regulator	K13634	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0097159,GO:1901363	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004217	351.0
DYD3_k127_4132674_1	PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C	K07259	-	3.4.16.4	0.0000000000000000000000000000000000000000000000000000000000000000000584	239.0
DYD3_k127_4132674_2	Pyridoxal-phosphate dependent enzyme	K01738	-	2.5.1.47	0.0000000000000000000000000002477	115.0
DYD3_k127_4132674_3	SH3 domain protein	K07184	-	-	0.0005241	49.0
DYD3_k127_413847_0	oxidoreductase	K07222	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007875	539.0
DYD3_k127_413847_1	Serine aminopeptidase, S33	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594	507.0
DYD3_k127_413847_2	Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase	-	-	-	0.00000000000000000000000000000000000000000002597	165.0
DYD3_k127_413847_3	OsmC-like protein	-	-	-	0.0000003934	51.0
DYD3_k127_4154209_0	Amidohydrolase family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144	333.0
DYD3_k127_4154209_1	Putative MetA-pathway of phenol degradation	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008895	312.0
DYD3_k127_4154209_2	Opacity family porin protein	K03286	-	-	0.000000000000000000000000000000000000000000000000000000000000000003195	241.0
DYD3_k127_4170062_0	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006622	304.0
DYD3_k127_4170062_1	Cytochrome c-type protein	K02569	-	-	0.0000000000000000000000000000000000000000000000000000000000000001944	227.0
DYD3_k127_4170062_2	PFAM Cytochrome C	K17230	-	-	0.0000000000000000000000000000000000000000000000000000004365	201.0
DYD3_k127_4170062_3	SnoaL-like domain	-	-	-	0.0000000000000000000009853	101.0
DYD3_k127_4170062_4	CBS domain	-	-	-	0.0000000000005705	70.0
DYD3_k127_4178741_0	Rieske [2Fe-2S] domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000927	447.0
DYD3_k127_4178741_1	Las17-binding protein actin regulator	-	-	-	0.0000000000000000000000000000000000000000000000000002714	199.0
DYD3_k127_4178741_2	Transcription elongation factor, GreA/GreB, C-term	K04760	-	-	0.0000000000000000000000000000000000000000000000000002912	189.0
DYD3_k127_4178741_3	-	-	-	-	0.00000000000000000000000000000000001333	136.0
DYD3_k127_4201728_0	FAD dependent oxidoreductase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006017	350.0
DYD3_k127_4201728_1	Bacterial protein of unknown function (DUF899)	-	-	-	0.0000000001514	63.0
DYD3_k127_4226556_0	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123	561.0
DYD3_k127_4226556_1	PFAM Major Facilitator Superfamily	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708	451.0
DYD3_k127_4230518_0	Penicillin acylase	K01434	-	3.5.1.11	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096	568.0
DYD3_k127_4230518_1	Belongs to the pyruvate kinase family	K00873	-	2.7.1.40	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644	501.0
DYD3_k127_4231599_0	cAMP biosynthetic process	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009198	340.0
DYD3_k127_4231599_1	PFAM Peptidase M23	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006185	300.0
DYD3_k127_4231599_10	Protein of unknown function (DUF502)	-	-	-	0.000000000955	61.0
DYD3_k127_4231599_2	ABC-type multidrug transport system ATPase and permease	K06147	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000001068	265.0
DYD3_k127_4231599_3	Succinylglutamate desuccinylase / Aspartoacylase family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000004762	265.0
DYD3_k127_4231599_4	-	-	-	-	0.00000000000000000000000000000000000000000000000000001389	203.0
DYD3_k127_4231599_5	Gamma-glutamyltranspeptidase	K00681	-	2.3.2.2,3.4.19.13	0.00000000000000000000000000000000000000000000000005972	182.0
DYD3_k127_4231599_6	Zincin-like metallopeptidase	-	-	-	0.00000000000000000000000001285	117.0
DYD3_k127_4231599_7	Protein of unknown function (DUF502)	-	-	-	0.0000000000000000004125	98.0
DYD3_k127_4231599_8	Protein of unknown function (DUF3185)	-	-	-	0.0000000000000007402	81.0
DYD3_k127_4231599_9	rRNA binding	-	-	-	0.000000000000108	83.0
DYD3_k127_4232673_0	glutamate dehydrogenase	K15371	-	1.4.1.2	0.0	1366.0
DYD3_k127_4232673_1	Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily	K01834	-	5.4.2.11	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406	328.0
DYD3_k127_4232673_2	Bacterial transferase hexapeptide (six repeats)	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000001683	229.0
DYD3_k127_4232718_0	Cystathionine beta-synthase	K01697	-	4.2.1.22	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000172	599.0
DYD3_k127_4232718_1	cystathionine	K01758	-	4.4.1.1	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274	573.0
DYD3_k127_4232718_2	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif	K02493	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564	2.1.1.297	0.00000000000000000000000000000000000000000000000000000000000000000000000004832	261.0
DYD3_k127_4232718_3	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	K01802,K03767,K03768	GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005623,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0036211,GO:0042597,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0071704,GO:0140096,GO:1901564	5.2.1.8	0.000000000000000000000000000000000000000000000000000000002344	207.0
DYD3_k127_4232718_4	Cytochrome c	-	-	-	0.00000001642	58.0
DYD3_k127_4247541_0	soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein	K18691	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812	426.0
DYD3_k127_4247541_1	Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	K14155	-	4.4.1.8	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006492	304.0
DYD3_k127_4251760_0	Belongs to the peptidase S41A family	K03797	-	3.4.21.102	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678	362.0
DYD3_k127_4251760_1	Divergent polysaccharide deacetylase	K09798	-	-	0.00000000000000000000000000000000000000000000000000000000002381	216.0
DYD3_k127_4275783_0	Activates fatty acids by binding to coenzyme A	K01897	-	6.2.1.3	5.377e-230	725.0
DYD3_k127_4275783_1	ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component	K02003	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005613	291.0
DYD3_k127_4275783_2	ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component	K02004	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000003334	250.0
DYD3_k127_4275783_3	COG2755 Lysophospholipase L1 and related esterases	K10804	GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016289,GO:0016290,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0047617,GO:0052689,GO:0071704,GO:0140096,GO:1901564	3.1.1.5	0.000000000000000000000000000000000000000000000000000000000000001226	229.0
DYD3_k127_4287553_0	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction	K01409	-	2.3.1.234	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009605	380.0
DYD3_k127_4287553_1	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin	K01633	-	1.13.11.81,4.1.2.25,5.1.99.8	0.000000000000000000000000000000000000000000194	163.0
DYD3_k127_4287553_2	PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	K00950	-	2.7.6.3	0.00000000000000000000000000000000000000003174	158.0
DYD3_k127_4287553_3	Peptidase family S41	-	-	-	0.00000001595	62.0
DYD3_k127_429700_0	COG NOG10142 non supervised orthologous group	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007308	456.0
DYD3_k127_429700_1	Amidohydrolase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261	437.0
DYD3_k127_429700_2	Tfp pilus assembly protein FimV	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446	308.0
DYD3_k127_429700_3	Belongs to the glutaminase family	K01425	-	3.5.1.2	0.000000000000000000000008097	103.0
DYD3_k127_4310481_0	Belongs to the prokaryotic GSH synthase family	K01920	-	6.3.2.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004324	415.0
DYD3_k127_4310481_1	PFAM Luciferase-like	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000001214	233.0
DYD3_k127_4310481_2	Belongs to the UPF0301 (AlgH) family	K07735	-	-	0.0000000000000000000000000000000000000000000000000000000000002423	217.0
DYD3_k127_4310481_3	response regulator	K02657	-	-	0.00000000000000000000000000000000000000000000000000000000001535	209.0
DYD3_k127_4310481_4	response regulator receiver	K02658	-	-	0.00000000000000000000000000000000000000000002973	163.0
DYD3_k127_4310481_5	Belongs to the ATCase OTCase family	K00609	-	2.1.3.2	0.0000000000000000000000000000000000000000598	156.0
DYD3_k127_4310481_6	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA	K07447	GO:0000966,GO:0000967,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0140097,GO:1901360	-	0.000000000000000000000000000000004037	137.0
DYD3_k127_4310481_7	Two component signalling adaptor domain	K02659	-	-	0.00000000000000000000000000000002093	132.0
DYD3_k127_4310481_8	Periplasmic protein TonB, links inner and outer membranes	K03832	-	-	0.0000000000000000000000000000002472	135.0
DYD3_k127_4320172_0	Short-chain dehydrogenase reductase sdr	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003028	300.0
DYD3_k127_4320172_1	Acetyltransferase (GNAT) domain	-	-	-	0.0000000000000000000000000000000000000003898	154.0
DYD3_k127_4320172_2	Reversible hydration of carbon dioxide	K01673	-	4.2.1.1	0.0000000000000001336	79.0
DYD3_k127_4320548_0	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine	K13038	-	4.1.1.36,6.3.2.5	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001944	440.0
DYD3_k127_4320548_1	Belongs to the UPF0758 family	K03630	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000003225	256.0
DYD3_k127_4320548_2	PFAM Fatty acid desaturase	K00507	-	1.14.19.1	0.000000000000000000000000000000000000000000000000000000000000000000003193	241.0
DYD3_k127_4320548_3	Belongs to the bacterial ribosomal protein bL28 family	K02902	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	0.0000000000000000000000000000000003678	136.0
DYD3_k127_4320548_4	there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc	K02913	-	-	0.00000000000000000008997	94.0
DYD3_k127_4321158_0	TonB-dependent receptor	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000007221	260.0
DYD3_k127_4322214_0	Belongs to the formate--tetrahydrofolate ligase family	K01938	-	6.3.4.3	1.924e-263	824.0
DYD3_k127_4322214_1	Bacterial protein of unknown function (DUF885)	-	-	-	9.612e-233	733.0
DYD3_k127_4322214_2	TonB dependent receptor	K02014	-	-	9.415e-219	712.0
DYD3_k127_4322214_3	Belongs to the anaerobic coproporphyrinogen-III oxidase family	-	-	-	0.000000000000000000000000000000000000000000000000002032	186.0
DYD3_k127_4325170_0	COG5265 ABC-type transport system involved in Fe-S cluster assembly permease and ATPase components	K06147	-	-	1.91e-299	931.0
DYD3_k127_4325170_1	Putative MetA-pathway of phenol degradation	-	-	-	0.0000000000000001748	80.0
DYD3_k127_4337992_0	Flavin containing amine oxidoreductase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389	509.0
DYD3_k127_4337992_1	PFAM NAD dependent epimerase dehydratase family	K01784	-	5.1.3.2	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116	456.0
DYD3_k127_4337992_10	Pfam Glycosyl transferase family 2	-	-	-	0.00000001368	58.0
DYD3_k127_4337992_2	Belongs to the DegT DnrJ EryC1 family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179	443.0
DYD3_k127_4337992_3	Polysaccharide deacetylase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292	396.0
DYD3_k127_4337992_4	Oxidoreductase family, NAD-binding Rossmann fold	K13018	-	2.3.1.201	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945	373.0
DYD3_k127_4337992_5	Belongs to the UDP-N-acetylglucosamine 2-epimerase family	K13019	-	5.1.3.23	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096	339.0
DYD3_k127_4337992_6	Hexapeptide repeat of succinyl-transferase	K13018	-	2.3.1.201	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000652	272.0
DYD3_k127_4337992_7	Sulfotransferase family	-	-	-	0.00000000000000000000000000000000000000000000002535	183.0
DYD3_k127_4337992_8	Lysylphosphatidylglycerol synthase TM region	K07027	-	-	0.0000000000000000000000000000000000000001105	164.0
DYD3_k127_4337992_9	Protein involved in outer membrane biogenesis	-	-	-	0.000000000000000001013	94.0
DYD3_k127_4343136_0	CoA-transferase family III	K01796	-	5.1.99.4	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759	460.0
DYD3_k127_4343136_1	Mediates influx of magnesium ions	K03284	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065	359.0
DYD3_k127_4343136_2	Aminotransferase class-III	-	-	-	0.00000000000000000000000000000000006653	137.0
DYD3_k127_4343136_3	exo-alpha-(2->6)-sialidase activity	-	-	-	0.0000000000000745	76.0
DYD3_k127_4348727_0	Peptidase_C39 like family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000663	261.0
DYD3_k127_4348727_1	AI-2E family transporter	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000001696	262.0
DYD3_k127_4348727_2	GGDEF domain containing protein	-	-	-	0.000000000000000000000000000000000000001723	155.0
DYD3_k127_4348727_3	Transglycosylase associated protein	-	-	-	0.0000000000000000000000000004871	116.0
DYD3_k127_4348727_4	-	-	-	-	0.000000000000000000000008698	107.0
DYD3_k127_4395593_0	phenylacetic acid degradation operon negative regulatory protein	K02616	GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0006082,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010124,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010817,GO:0016054,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019748,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032774,GO:0032787,GO:0034641,GO:0034645,GO:0034654,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043170,GO:0043254,GO:0043436,GO:0043565,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044282,GO:0045892,GO:0045934,GO:0046395,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098754,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187	310.0
DYD3_k127_4395593_1	protein, possibly involved in aromatic compounds catabolism	K02614	GO:0003674,GO:0003824,GO:0016289,GO:0016787,GO:0016788,GO:0016790	-	0.0000000000000000000000000000000000000000711	156.0
DYD3_k127_4395593_2	phenylacetic acid degradation protein paaN	K02618	-	1.2.1.91,3.3.2.12	0.000000000000007407	76.0
DYD3_k127_4406481_0	Amino acid permease	K03756,K03759	-	-	5.38e-216	677.0
DYD3_k127_4406481_1	Orn/Lys/Arg decarboxylase, N-terminal domain	K01581	-	4.1.1.17	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001	627.0
DYD3_k127_4417667_0	Dak2	K07030	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132	439.0
DYD3_k127_4417667_1	Peptidoglycan-binding domain 1 protein	K02450	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016	411.0
DYD3_k127_4417667_2	Belongs to the FPP GGPP synthase family	K00795,K13789	-	2.5.1.1,2.5.1.10,2.5.1.29	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004241	298.0
DYD3_k127_4417667_3	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII	K02346	GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031668,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576	2.7.7.7	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002676	301.0
DYD3_k127_4417667_4	GHMP kinases N terminal domain	K01597	-	4.1.1.33	0.00000000000000000000000000000000000005596	151.0
DYD3_k127_4417667_5	Type II secretion system protein B	-	-	-	0.0000000007885	68.0
DYD3_k127_4433103_0	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	K02469	-	5.99.1.3	0.0	1240.0
DYD3_k127_4433103_1	thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	K02945	-	-	4.42e-266	830.0
DYD3_k127_4433103_10	Belongs to the cytidylate kinase family. Type 1 subfamily	K00945	-	2.7.4.25	0.00000000000000000000000000000000000000000000000000000000000000000000001823	250.0
DYD3_k127_4433103_11	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	K05788	-	-	0.0000000000000000000000000000000000000000007066	158.0
DYD3_k127_4433103_12	competence protein ComEA	K02237	-	-	0.0000000000000000557	89.0
DYD3_k127_4433103_13	Lipopolysaccharide assembly protein A domain	K08992	-	-	0.0001065	50.0
DYD3_k127_4433103_2	Pyridine nucleotide-disulphide oxidoreductase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984	523.0
DYD3_k127_4433103_3	D-isomer specific 2-hydroxyacid dehydrogenase	K00058	-	1.1.1.399,1.1.1.95	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069	509.0
DYD3_k127_4433103_4	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine	K00831	-	2.6.1.52	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009354	488.0
DYD3_k127_4433103_5	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	K00800	-	2.5.1.19	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008814	471.0
DYD3_k127_4433103_6	Prephenate dehydratase	K14170	-	4.2.1.51,5.4.99.5	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004983	439.0
DYD3_k127_4433103_7	UTP-glucose-1-phosphate uridylyltransferase	K00963	-	2.7.7.9	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015	366.0
DYD3_k127_4433103_8	Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine	K12960	-	3.5.4.28,3.5.4.31	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007182	310.0
DYD3_k127_4433103_9	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane	K19804	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000001628	263.0
DYD3_k127_4478491_0	Two component regulator propeller	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003997	631.0
DYD3_k127_4478491_1	Predicted membrane protein (DUF2207)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003471	401.0
DYD3_k127_4478491_2	lysine exporter protein (LysE YggA)	-	-	-	0.00000000000000000000000000000000000000000000000000001403	194.0
DYD3_k127_4478491_3	LemA family	-	-	-	0.0000000000000000000000000000000000000000000000202	178.0
DYD3_k127_4478491_4	Eukaryotic integral membrane protein (DUF1751)	-	-	-	0.000000000000000000000000000000000000000002909	160.0
DYD3_k127_4478491_5	MOSC domain	-	-	-	0.00000000000000000000000000000000000000001352	160.0
DYD3_k127_4478491_6	membrane	-	-	-	0.0000000000002927	70.0
DYD3_k127_4480306_0	Domain of unknown function (DUF4142)	-	-	-	6.273e-223	698.0
DYD3_k127_4480306_1	-	-	-	-	0.00000000000377	70.0
DYD3_k127_4480306_2	Protein of unknown function (DUF3108)	-	-	-	0.000000008327	66.0
DYD3_k127_4509020_0	COG4631 Xanthine dehydrogenase, molybdopterin-binding subunit B	K13482	-	1.17.1.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007361	583.0
DYD3_k127_4509020_1	Xanthine dehydrogenase accessory protein XdhC	K07402	-	-	0.000000000000000000000000000000000000000000000000000000000000006095	237.0
DYD3_k127_4509020_2	Urate oxidase N-terminal	-	-	-	0.00000000000001856	73.0
DYD3_k127_4514534_0	transporter	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103	588.0
DYD3_k127_4531397_0	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	K18298,K19586	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001586	284.0
DYD3_k127_4531397_1	Bacterial regulatory proteins, tetR family	-	-	-	0.000000000000000000000000000000000000000000000000000001661	200.0
DYD3_k127_4531397_2	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source	K00820	GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.6.1.16	0.00000000000000000000000000000000000000000000000000002824	189.0
DYD3_k127_4539137_0	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine	K01251	GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657	3.3.1.1	3.286e-240	749.0
DYD3_k127_4539137_1	PFAM aminotransferase class-III	K01845	-	5.4.3.8	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245	584.0
DYD3_k127_4539137_2	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme	K00789	-	2.5.1.6	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003298	514.0
DYD3_k127_4539137_3	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes	K03651	-	3.1.4.53	0.0000000000000000000000000000000000000000000000000000000003776	211.0
DYD3_k127_4539137_4	TraB family	K09973	-	-	0.000000000000000000000000000000000000000000000000007714	192.0
DYD3_k127_4539137_5	PFAM Rubredoxin-type Fe(Cys)4 protein	-	-	-	0.00000000000000000000005896	98.0
DYD3_k127_455274_0	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	K03296	-	-	2.885e-269	866.0
DYD3_k127_455274_1	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	K03296	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005445	593.0
DYD3_k127_4556264_0	TonB dependent receptor	K02014	-	-	2.454e-289	908.0
DYD3_k127_4556264_1	Belongs to the cysteine synthase cystathionine beta- synthase family	K01738	-	2.5.1.47	2.525e-219	691.0
DYD3_k127_4556264_2	Molybdopterin-converting factor chain 2	K03635	-	2.8.1.12	0.000000000000000000000000000000000000000000000000005661	186.0
DYD3_k127_4556264_3	N-terminal half of MaoC dehydratase	-	-	-	0.0000000000000000000000000000000000000000001169	167.0
DYD3_k127_4556264_4	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-	-	-	0.000000000000000000000000000002283	128.0
DYD3_k127_4556264_5	Phospholipase_D-nuclease N-terminal	-	-	-	0.0000000000000267	77.0
DYD3_k127_4563646_0	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism	K00600	-	2.1.2.1	3.255e-206	653.0
DYD3_k127_4563646_1	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate	K14652	-	3.5.4.25,4.1.99.12	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783	474.0
DYD3_k127_4563646_2	ABC transporter	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277	467.0
DYD3_k127_4563646_3	Histone deacetylase domain	K04768	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007586	396.0
DYD3_k127_4563646_4	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate	K11752	-	1.1.1.193,3.5.4.26	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025	391.0
DYD3_k127_4563646_5	riboflavin synthase, alpha subunit	K00793	-	2.5.1.9	0.0000000000000000000000000000000000000000000000000000000000000000000000005167	252.0
DYD3_k127_4563646_6	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	K07738	GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005524,GO:0006355,GO:0008144,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141	-	0.000000000000000000000000000000000000000000000000000000000000013	219.0
DYD3_k127_4563646_7	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin	K00794	-	2.5.1.78	0.000000000000000000000000000000000000000000000000000000005626	202.0
DYD3_k127_4563646_8	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1	K00946	-	2.7.4.16	0.0000000000000000000000000000000000000000000000000001096	195.0
DYD3_k127_4563646_9	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons	K03625	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576	-	0.000000000000000000000000000003651	124.0
DYD3_k127_4565087_0	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives	K03644	-	2.8.1.8	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188	499.0
DYD3_k127_4565087_1	PFAM peptidase	K04774	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016	340.0
DYD3_k127_4565087_2	L,D-transpeptidase catalytic domain	K16291	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009167	318.0
DYD3_k127_4565087_3	Methyltransferase domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000009893	252.0
DYD3_k127_4565087_4	peptidase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000002479	244.0
DYD3_k127_4572084_0	Catalyzes the synthesis of GMP from XMP	K01951	GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659	6.3.5.2	3.246e-246	769.0
DYD3_k127_4572084_1	Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth	K00088	-	1.1.1.205	1.387e-226	710.0
DYD3_k127_4572084_2	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	K03601	-	3.1.11.6	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758	393.0
DYD3_k127_4572084_3	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	-	-	-	0.000000000000000000000000000002803	123.0
DYD3_k127_4572084_4	peptidase	-	-	-	0.000008012	50.0
DYD3_k127_4574640_0	(ABC) transporter	K01990	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825	377.0
DYD3_k127_4574640_1	COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component	K01992	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007868	330.0
DYD3_k127_4574640_2	Gamma-glutamyltranspeptidase	K00681	-	2.3.2.2,3.4.19.13	0.0000000000000000000000000000000000000000000000000000004606	195.0
DYD3_k127_4578714_0	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	K20034	-	6.2.1.44	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767	596.0
DYD3_k127_4578714_1	COG1629 Outer membrane receptor proteins, mostly Fe transport	K02014	-	-	0.000000000000001142	80.0
DYD3_k127_4582931_0	Mate efflux family protein	K03327	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008732	392.0
DYD3_k127_4582931_1	Belongs to the Nudix hydrolase family	K01515	-	3.6.1.13	0.0000000000000000000000000000000000001686	143.0
DYD3_k127_4582931_3	Acyl-CoA dehydrogenase	K00252	-	1.3.8.6	0.0000000000003063	69.0
DYD3_k127_4586065_0	COG1622 Heme copper-type cytochrome quinol oxidases, subunit 2	K02275	-	1.9.3.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049	339.0
DYD3_k127_4612555_0	Adenylyl- / guanylyl cyclase, catalytic domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008681	567.0
DYD3_k127_4612555_1	peptidyl-tyrosine sulfation	-	-	-	0.00000000000000000000000000000000000000002413	169.0
DYD3_k127_4628319_0	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	K01890	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494	6.1.1.20	2.045e-225	722.0
DYD3_k127_4628319_1	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage	K03702	-	-	1.749e-221	694.0
DYD3_k127_4628319_2	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily	K01889	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576	6.1.1.20	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557	434.0
DYD3_k127_4628319_3	-	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000599	326.0
DYD3_k127_4628319_4	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins	K02520	-	-	0.0000000000000000000000000000000000000000000000000000000000000001086	226.0
DYD3_k127_4628319_5	MerR family regulatory protein	-	-	-	0.000000000000000000000000000000000000000000000000000000004255	200.0
DYD3_k127_4628319_6	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit	K02887	-	-	0.00000000000000000000000000000000000000000000004653	171.0
DYD3_k127_4628319_7	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control	K04764	GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141	-	0.000000000000000000000000000000000000000001094	160.0
DYD3_k127_4628319_8	Belongs to the bacterial ribosomal protein bL35 family	K02916	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	0.000000000000000002332	87.0
DYD3_k127_4628319_9	PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit	K01754	-	4.3.1.19	0.00000000006374	66.0
DYD3_k127_46436_0	COG0729 Outer membrane protein	K07278	-	-	0.0000000000000000000000000000000000000000000000000000000000001454	227.0
DYD3_k127_46436_1	Metal dependent phosphohydrolases with conserved 'HD' motif.	-	-	-	0.00000000000001358	78.0
DYD3_k127_4653025_0	Polyphosphate kinase 2 (PPK2)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009776	420.0
DYD3_k127_4653025_1	Dolichyl-phosphate-mannose-protein mannosyltransferase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003389	384.0
DYD3_k127_4653025_2	Alanine-glyoxylate amino-transferase	-	-	-	0.0000000000000000000000000000000054	133.0
DYD3_k127_4653025_3	DUF167	K09131	-	-	0.0000000000000000001113	90.0
DYD3_k127_4653025_4	-	-	-	-	0.000000000000672	73.0
DYD3_k127_4661373_0	TonB-dependent receptor plug	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226	430.0
DYD3_k127_4661373_1	transcriptional regulator	-	-	-	0.000000000000000005032	87.0
DYD3_k127_4666922_0	Cytochrome c	K02198	-	-	4.327e-245	774.0
DYD3_k127_4666922_1	oxidoreductase DsbE	K02199	-	-	0.0000000000000000000000000000000000000000000000000003716	192.0
DYD3_k127_4666922_2	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH	K02197	-	-	0.0000000000000000000000000000000000000003846	153.0
DYD3_k127_4666922_3	Tetratricopeptide repeat	-	-	-	0.000000000000000000000000000000002562	141.0
DYD3_k127_4666922_4	subunit of a heme lyase	K02200,K04017	GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009897,GO:0009986,GO:0009987,GO:0015035,GO:0015036,GO:0016020,GO:0016043,GO:0016491,GO:0016667,GO:0017004,GO:0022607,GO:0031224,GO:0031226,GO:0031233,GO:0031237,GO:0034622,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0055114,GO:0065003,GO:0071840,GO:0071944,GO:0098552,GO:0098567	-	0.00000000000000000000000000002026	123.0
DYD3_k127_4666922_5	PFAM thioesterase superfamily	-	-	-	0.000000000001478	69.0
DYD3_k127_468640_0	COG1228 Imidazolonepropionase and related amidohydrolases	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003513	603.0
DYD3_k127_468640_1	Domain of unknown function (DUF4442)	-	-	-	0.0000000000000000000000000000001503	126.0
DYD3_k127_468640_2	Amidohydrolase family	-	-	-	0.0000000000000000000000000000007314	133.0
DYD3_k127_4693742_0	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	K03572	-	-	4.053e-206	656.0
DYD3_k127_4693742_1	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)	K18979	-	1.17.99.6	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093	490.0
DYD3_k127_4693742_10	HflC and HflK could encode or regulate a protease	K04088	-	-	0.000000000000000000000000000000003776	132.0
DYD3_k127_4693742_2	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration	K17758,K17759	-	4.2.1.136,5.1.99.6	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471	488.0
DYD3_k127_4693742_3	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis	K03665	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018105,GO:0018193,GO:0018209,GO:0019001,GO:0019222,GO:0019538,GO:0019843,GO:0022411,GO:0030554,GO:0031323,GO:0031326,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032790,GO:0032984,GO:0032988,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036211,GO:0036289,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:2000112	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053	468.0
DYD3_k127_4693742_4	N-acetylmuramoyl-L-alanine amidase	K01448	GO:0000003,GO:0000910,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0007049,GO:0008150,GO:0008745,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0019954,GO:0022402,GO:0022414,GO:0030288,GO:0030313,GO:0031975,GO:0032505,GO:0042597,GO:0043093,GO:0044464,GO:0051301,GO:0061783	3.5.1.28	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003	418.0
DYD3_k127_4693742_5	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)	K00791	GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360	2.5.1.75	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007675	323.0
DYD3_k127_4693742_6	cyclic nucleotide-binding protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000005161	241.0
DYD3_k127_4693742_7	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate	K01918	GO:0003674,GO:0003824,GO:0004592,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605	6.3.2.1	0.00000000000000000000000000000000000000000000000000000000005101	209.0
DYD3_k127_4693742_8	RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs	K03666	-	-	0.00000000000000000000000000000000002716	139.0
DYD3_k127_4693742_9	Threonylcarbamoyl adenosine biosynthesis protein TsaE	K06925	-	-	0.000000000000000000000000000000001908	142.0
DYD3_k127_4769276_0	TIGRFAM penicillin-binding protein, 1A	K05366	-	2.4.1.129,3.4.16.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027	407.0
DYD3_k127_4769276_1	Pilus assembly protein	K02662	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145	374.0
DYD3_k127_4769276_2	Pilus assembly protein PilO	K02664	-	-	0.000000000000000000000000000000000000000000000000000000157	202.0
DYD3_k127_4769276_3	PFAM Fimbrial assembly	K02663	-	-	0.00000000000000000000000000000000000000000008161	166.0
DYD3_k127_4809549_0	Tetratricopeptide repeat	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000004981	286.0
DYD3_k127_4809549_1	Aminotransferase class-V	-	-	-	0.000001129	53.0
DYD3_k127_4828912_0	OmpA family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892	306.0
DYD3_k127_4828912_1	Adenylate cyclase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003478	309.0
DYD3_k127_4828912_2	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	K01759	GO:0003674,GO:0003824,GO:0004462,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016846,GO:0034641,GO:0043603,GO:0044237,GO:0051186,GO:0071704,GO:1901564	4.4.1.5	0.0000000000000000000000000000000000000000000000000000000000000000001104	241.0
DYD3_k127_4828912_3	acetyltransferases and hydrolases with the alpha beta hydrolase fold	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000008811	238.0
DYD3_k127_4828912_4	Hydrolase	K20862	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0018130,GO:0022611,GO:0032502,GO:0034641,GO:0042364,GO:0042578,GO:0042726,GO:0042727,GO:0043167,GO:0043169,GO:0043726,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	3.1.3.102,3.1.3.104	0.00000000000000000000000000000000000000000000000000000007218	203.0
DYD3_k127_4828912_5	Acid phosphatase homologues	K19302	-	3.6.1.27	0.00000000000000000000000001479	110.0
DYD3_k127_4831961_0	involved in chromosome partitioning	K03496	-	-	0.00000000000000000000000000000000000000000000000000000000000000001972	229.0
DYD3_k127_4831961_1	NAD dependent epimerase/dehydratase family	-	-	-	0.00000000000000000000000000000000000000000000000000004409	196.0
DYD3_k127_4831961_2	Belongs to the 'phage' integrase family. XerC subfamily	K03733	-	-	0.00000000000000000000000000000000000000000000000149	186.0
DYD3_k127_4831961_3	Protein of unknown function, DUF484	K09921	-	-	0.0000000000000000000000000000000000000000005346	166.0
DYD3_k127_4839605_0	DNA-3-methyladenine glycosylase I	K01246	-	3.2.2.20	0.00000000000000000000000000000000000000000000000000000000000000000000000000004717	263.0
DYD3_k127_4839605_1	Belongs to the ALAD family	K01698	-	4.2.1.24	0.000000000000000000000000000000000000000000000000000000000000001725	224.0
DYD3_k127_4839605_2	Belongs to the sigma-70 factor family. ECF subfamily	K03088	-	-	0.0000000000000000000000000000000000000000005774	163.0
DYD3_k127_4839605_3	-	-	-	-	0.000000000000000000000000000002837	125.0
DYD3_k127_4839605_4	-	-	-	-	0.000000000000001735	82.0
DYD3_k127_4839605_5	Protein of unknown function (DUF3379)	-	-	-	0.0000000000009794	78.0
DYD3_k127_4849973_0	methyltransferase activity	K21310	-	2.1.1.334	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538	316.0
DYD3_k127_4849973_1	Alpha beta hydrolase	-	-	-	0.00000000000000000000009596	114.0
DYD3_k127_4849973_2	Tetratricopeptide repeat	-	-	-	0.0000000000001142	85.0
DYD3_k127_4850020_0	lysine biosynthetic process via aminoadipic acid	-	-	-	1.23e-292	914.0
DYD3_k127_4854275_0	COGs COG5616 integral membrane protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009153	306.0
DYD3_k127_4854275_1	Bacterial transcriptional repressor C-terminal	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000002462	275.0
DYD3_k127_4854275_2	Ferric uptake regulator family	K22297	-	-	0.0000000000000000000000000000000000000000000000000000000701	198.0
DYD3_k127_4854275_3	Protein of unknown function (DUF1761)	-	-	-	0.0000000000000000000000000000000000000000000000003643	179.0
DYD3_k127_4854275_4	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity	K03782	-	1.11.1.21	0.0000000000000000000000000000002255	126.0
DYD3_k127_4854275_5	-	-	-	-	0.000000000000000000000000006243	120.0
DYD3_k127_4865465_0	COG0402 Cytosine deaminase and related metal-dependent hydrolases	K01487	-	3.5.4.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007211	524.0
DYD3_k127_4865465_1	Belongs to the allantoicase family	K01477	-	3.5.3.4	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594	421.0
DYD3_k127_4865465_2	phosphoribosyltransferase	K07101	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000001239	250.0
DYD3_k127_4865465_3	Phosphoribosyl transferase domain	K07101	-	-	0.000000000000000000000000000000000000000000000000000000000000009009	222.0
DYD3_k127_4865465_4	Possible lysine decarboxylase	K06966	-	3.2.2.10	0.00000000000000000000000000000000000000001265	156.0
DYD3_k127_4865465_5	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source	K01483	-	4.3.2.3	0.0000000000000000000000000000000000000003057	157.0
DYD3_k127_4865465_6	protein conserved in bacteria	-	-	-	0.000000000000000000000000000000000000001152	151.0
DYD3_k127_4865596_0	TonB-dependent receptor	K02014	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407	573.0
DYD3_k127_4865596_1	HupE / UreJ protein	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346	325.0
DYD3_k127_4865596_2	YMGG-like Gly-zipper	-	-	-	0.0000000000000000000000000000000000000006017	156.0
DYD3_k127_4865596_3	Protein of unknown function (DUF3604)	-	-	-	0.0000000000000000000000000000000000000007076	148.0
DYD3_k127_4865596_4	PPIC-type PPIASE domain	-	-	-	0.00000000000000000000000000000000000000888	153.0
DYD3_k127_4870218_0	Lipoprotein releasing system transmembrane protein	K09808	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524	437.0
DYD3_k127_4870218_1	DNA internalization-related competence protein ComEC Rec2	K02238	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999	372.0
DYD3_k127_4870218_2	Part of the ABC transporter complex LolCDE involved in the translocation of	K09810	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001909	285.0
DYD3_k127_4870218_3	lipoprotein releasing system, transmembrane protein, LolC E family	K09808	-	-	0.00000000000000000000000000000000000000000000000000000000000000000001597	241.0
DYD3_k127_4870218_4	protein conserved in bacteria	K09928	-	-	0.000000000000000000000000000000000000002859	152.0
DYD3_k127_487816_0	OPT oligopeptide transporter protein	-	-	-	8.796e-287	895.0
DYD3_k127_487816_1	ChrR Cupin-like domain	-	-	-	0.0000000002452	69.0
DYD3_k127_489015_0	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	K04487	GO:0001522,GO:0003674,GO:0003824,GO:0004123,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009000,GO:0009058,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016226,GO:0016740,GO:0016769,GO:0016782,GO:0016783,GO:0016829,GO:0016846,GO:0018130,GO:0018131,GO:0019842,GO:0022607,GO:0030170,GO:0031071,GO:0031119,GO:0031163,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046484,GO:0048037,GO:0050662,GO:0051186,GO:0070279,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097163,GO:0140104,GO:1901360,GO:1901363	2.8.1.7	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000684	386.0
DYD3_k127_489015_1	Inositol monophosphatase	K01092	-	3.1.3.25	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006484	320.0
DYD3_k127_489015_2	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA	K15396	-	2.1.1.200	0.00000000000000000000000000000000000000000000000000000000000000000000000000000003758	274.0
DYD3_k127_4891593_0	Pro-apoptotic serine protease	-	-	-	4.684e-228	732.0
DYD3_k127_4898921_0	Cation efflux family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196	360.0
DYD3_k127_4898921_1	endonuclease activity	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109	347.0
DYD3_k127_4898921_2	mechanosensitive ion channel	K03442	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137	302.0
DYD3_k127_4898921_3	Glycosyl transferase family 2	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002137	279.0
DYD3_k127_4898921_4	Putative diguanylate phosphodiesterase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000008545	257.0
DYD3_k127_4898921_5	PAS fold	-	-	-	0.00000000000000000000000000000000000000000000000225	191.0
DYD3_k127_4902675_0	Cys/Met metabolism PLP-dependent enzyme	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223	430.0
DYD3_k127_4902675_1	Ceramidase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000002422	239.0
DYD3_k127_4902675_2	-	-	-	-	0.00000000000000000000000000000004893	133.0
DYD3_k127_4902675_3	Cupin domain	-	-	-	0.00000000000000000000000000000005569	128.0
DYD3_k127_4902675_4	Glutathione-dependent formaldehyde-activating	-	-	-	0.00000000000000000000001569	105.0
DYD3_k127_4902675_5	-	-	-	-	0.000001657	51.0
DYD3_k127_4912228_0	Mycolic acid cyclopropane synthetase	K00574	-	2.1.1.79	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196	431.0
DYD3_k127_4912228_1	Domain of unknown function (DUF4397)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005376	414.0
DYD3_k127_4912228_2	3-oxo-5-alpha-steroid 4-dehydrogenase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000537	314.0
DYD3_k127_4912228_3	Outer Membrane Lipoprotein	K03098	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000002089	259.0
DYD3_k127_4912228_4	Protein conserved in bacteria	-	-	-	0.0000000000000000000000000000000000000000006973	176.0
DYD3_k127_4912228_5	Protein of unknown function (DUF2878)	-	-	-	0.000000000000000000000000000000001908	142.0
DYD3_k127_4912228_6	PFAM Flavin containing amine oxidoreductase	-	-	-	0.00000000000000000000000007515	121.0
DYD3_k127_4924724_0	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	-	-	-	9.986e-297	938.0
DYD3_k127_4924724_1	Glucose inhibited division protein A	K00303	-	1.5.3.1	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842	439.0
DYD3_k127_4933051_0	Belongs to the heme-copper respiratory oxidase family	K00404	-	1.9.3.1	2.412e-255	792.0
DYD3_k127_4933051_1	AbgT putative transporter family	K12942	-	-	6.524e-231	724.0
DYD3_k127_4933051_10	Bacterial protein of unknown function (DUF899)	-	-	-	0.000000000000000000000000000000000000000000000000002432	189.0
DYD3_k127_4933051_11	Cytochrome C biogenesis protein transmembrane region	K09792	-	-	0.000000000000000000000000000000000000000009911	163.0
DYD3_k127_4933051_12	Cytochrome oxidase maturation protein	-	-	-	0.0000000000007043	73.0
DYD3_k127_4933051_13	Cbb3-type cytochrome oxidase	K00407	-	-	0.00000000009948	65.0
DYD3_k127_4933051_14	FixH	K09926	-	-	0.0000001901	54.0
DYD3_k127_4933051_15	-	-	-	-	0.000006552	54.0
DYD3_k127_4933051_2	cation transport ATPase	K01533	-	3.6.3.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006626	612.0
DYD3_k127_4933051_3	TIGRFAM cytochrome c oxidase accessory protein	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000327	571.0
DYD3_k127_4933051_4	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity	K00316	-	1.5.99.6	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438	564.0
DYD3_k127_4933051_5	cytochrome C family protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212	348.0
DYD3_k127_4933051_6	TIGRFAM cytochrome c oxidase, cbb3-type, subunit II	K00405	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932	307.0
DYD3_k127_4933051_7	C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex	K00406	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003877	306.0
DYD3_k127_4933051_8	Putative outer membrane beta-barrel porin, MtrB/PioB	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000001629	291.0
DYD3_k127_4933051_9	integral membrane protein	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000363	235.0
DYD3_k127_4933425_0	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	K00333	-	1.6.5.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004261	400.0
DYD3_k127_4933425_1	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate	K03431	-	5.4.2.10	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007524	367.0
DYD3_k127_4933425_2	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	K00331	-	1.6.5.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985	314.0
DYD3_k127_4933425_3	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)	K01803	-	5.3.1.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006035	294.0
DYD3_k127_4933425_4	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	K00332	-	1.6.5.3	0.000000000000000000000000000000000000000000000000000000000000000000000000000000003025	276.0
DYD3_k127_4933425_5	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	K00330	-	1.6.5.3	0.00000000000000000000000000000000000000000000000006179	180.0
DYD3_k127_4933425_6	PFAM Preprotein translocase SecG subunit	K03075	-	-	0.000000000000000000001113	100.0
DYD3_k127_49343_0	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates	K10563	GO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0008534,GO:0009987,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363	3.2.2.23,4.2.99.18	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031	351.0
DYD3_k127_49343_1	Fatty acid desaturase	K00507	-	1.14.19.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003866	316.0
DYD3_k127_49343_2	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	K03110	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000969	312.0
DYD3_k127_49343_3	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate	K00954	-	2.7.7.3	0.0000000000000000000000000000000000000000000000000000000004922	208.0
DYD3_k127_49343_4	Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle	K08316	-	2.1.1.171	0.000000000000000000000000000000000000000000000000000522	191.0
DYD3_k127_4946374_0	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components	K03106	-	3.6.5.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002494	323.0
DYD3_k127_4946374_1	Belongs to the RNA methyltransferase TrmD family	K00554	-	2.1.1.228	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000438	320.0
DYD3_k127_4946374_2	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes	K02860	GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360	-	0.000000000000000000000000000000000000000000004011	173.0
DYD3_k127_4946374_3	Belongs to the bacterial ribosomal protein bS16 family	K02959	GO:0000028,GO:0000217,GO:0000400,GO:0003674,GO:0003676,GO:0003677,GO:0003735,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016787,GO:0016788,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	0.0000000000000000000000000007951	124.0
DYD3_k127_4946374_4	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	K02884	-	-	0.000000002436	59.0
DYD3_k127_4962571_0	Protein of unknown function (DUF819)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000009995	250.0
DYD3_k127_4962571_1	Zn-dependent hydrolases of the beta-lactamase fold	-	-	-	0.00000000000000000000000000000000000000000000000000000005172	209.0
DYD3_k127_4962571_2	endonuclease containing a URI domain	K07461	-	-	0.00000000000000000002733	94.0
DYD3_k127_4962571_3	Acyltransferase	-	-	-	0.000000000000000002741	86.0
DYD3_k127_4981191_0	Formate dehydrogenase, alpha subunit	K00123	-	1.17.1.9	0.0	1408.0
DYD3_k127_4981191_1	NADH-quinone oxidoreductase subunit F	K00124	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000006963	244.0
DYD3_k127_4998533_0	Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily	K01919	-	6.3.2.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712	541.0
DYD3_k127_4998533_1	branched-chain-amino-acid aminotransferase-like protein	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755	359.0
DYD3_k127_4998533_2	Reductase C-terminal	K00529	-	1.18.1.3	0.00000000000000000000000000000000000000000000000000000000000000005995	227.0
DYD3_k127_4998533_3	cheY-homologous receiver domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000002924	226.0
DYD3_k127_4998533_4	Branched-chain amino acid aminotransferase	-	-	-	0.00000000000000000000000000000000000000000000000000000000007226	214.0
DYD3_k127_4998533_5	Integral membrane protein CcmA involved in cell shape determination	-	-	-	0.00000000001374	70.0
DYD3_k127_4998533_6	Protein of unknown function (DUF2845)	-	-	-	0.00000000001699	72.0
DYD3_k127_4998533_8	histidine kinase A domain protein	-	-	-	0.00004497	54.0
DYD3_k127_5002760_0	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system	K11076	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003319	451.0
DYD3_k127_5002760_1	COG1177 ABC-type spermidine putrescine transport system, permease component II	K11074	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003692	390.0
DYD3_k127_5002760_2	ABC-type spermidine putrescine transport system, permease component I	K11075	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005532	368.0
DYD3_k127_5002760_3	Required for the activity of the bacterial periplasmic transport system of putrescine	K11073	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000003726	246.0
DYD3_k127_5030168_0	Amidohydrolase	K07045	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495	429.0
DYD3_k127_5030168_1	COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases	-	-	-	0.00000000000000000000000000000003373	128.0
DYD3_k127_5050496_0	Belongs to the thiolase family	K00626	-	2.3.1.9	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021	390.0
DYD3_k127_5050496_1	Short-chain dehydrogenase reductase SDR	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000006536	268.0
DYD3_k127_5050496_2	COG1309 Transcriptional regulator	-	-	-	0.000000000000000000000000000000000000000000001627	171.0
DYD3_k127_5050496_3	Thioesterase superfamily	-	-	-	0.00000000002995	70.0
DYD3_k127_5050496_4	Redoxin	-	-	-	0.000001771	49.0
DYD3_k127_5051532_0	3-hydroxyacyl-coa dehydrogenase	K01782	-	1.1.1.35,4.2.1.17,5.1.2.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006151	558.0
DYD3_k127_5051532_1	COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275	358.0
DYD3_k127_5051532_2	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis	K00943	GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.4.9	0.00000000000000000000000000000000000000000000000000000008697	199.0
DYD3_k127_5051532_3	Pilus assembly protein PilZ	K02676	-	-	0.0000000000000000000000000000000000000000000000009383	178.0
DYD3_k127_5051532_4	DNA polymerase III, delta'	K02341	-	2.7.7.7	0.0000000000000000000000000000000000000000006442	170.0
DYD3_k127_5086571_0	Sulfatase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003374	351.0
DYD3_k127_5086571_1	S-adenosylmethionine-dependent methyltransferase	K06969	-	2.1.1.191	0.000000000000000000000000000000000000000000000000000000002372	206.0
DYD3_k127_5140301_0	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA	K01638	GO:0003674,GO:0003824,GO:0004474,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044424,GO:0044464,GO:0046487,GO:0046912,GO:0071704	2.3.3.9	1.44e-220	696.0
DYD3_k127_5140301_1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision	K03703	-	-	3.504e-214	681.0
DYD3_k127_5140301_10	uracil-DNA glycosylase	K21929	-	3.2.2.27	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001533	291.0
DYD3_k127_5140301_11	Histidine kinase	K07637	-	2.7.13.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001983	303.0
DYD3_k127_5140301_12	MazG nucleotide pyrophosphohydrolase domain	K04765	-	3.6.1.9	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007903	285.0
DYD3_k127_5140301_13	Belongs to the pseudouridine synthase RsuA family	K06178,K06181	-	5.4.99.20,5.4.99.22	0.00000000000000000000000000000000000000000000000000000000000000000002972	238.0
DYD3_k127_5140301_14	Methylamine dehydrogenase light chain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000363	215.0
DYD3_k127_5140301_15	COG0252 L-asparaginase archaeal Glu-tRNAGln amidotransferase subunit D	K01424	-	3.5.1.1	0.000000000000000000000000000000000000000000000000000000004877	203.0
DYD3_k127_5140301_16	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	K00995	-	2.7.8.5	0.00000000000000000000000000000000000000000000000000000004287	205.0
DYD3_k127_5140301_17	NUDIX domain	-	-	-	0.0000000000000000000000000000000000002336	153.0
DYD3_k127_5140301_18	Cytochrome c	-	-	-	0.0000000000000000000000000000002589	129.0
DYD3_k127_5140301_19	Outer membrane lipoprotein	-	-	-	0.00000000000000000000000000002812	124.0
DYD3_k127_5140301_2	belongs to the aldehyde dehydrogenase family	K00128	-	1.2.1.3	1.512e-210	668.0
DYD3_k127_5140301_20	-	-	-	-	0.00001613	51.0
DYD3_k127_5140301_3	phospho-2-dehydro-3-deoxyheptonate aldolase	K01626	-	2.5.1.54	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003479	612.0
DYD3_k127_5140301_4	Isocitrate	K00031	GO:0003674,GO:0003824,GO:0004448,GO:0004450,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0055114	1.1.1.42	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049	609.0
DYD3_k127_5140301_5	Saccharopine dehydrogenase C-terminal domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017	454.0
DYD3_k127_5140301_6	NfeD-like C-terminal, partner-binding	K07403	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458	417.0
DYD3_k127_5140301_7	PFAM Band 7 protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003397	341.0
DYD3_k127_5140301_8	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K07660	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007778	317.0
DYD3_k127_5140301_9	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate	K01679	GO:0003674,GO:0003824,GO:0004333,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0050896,GO:0055114,GO:0071704,GO:0072350	4.2.1.2	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415	299.0
DYD3_k127_5142740_0	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	K03553	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052	568.0
DYD3_k127_5142740_1	Glycosyl transferases group 1	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003298	323.0
DYD3_k127_5142740_2	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	K01872	GO:0001130,GO:0001131,GO:0001141,GO:0001217,GO:0002161,GO:0002196,GO:0003674,GO:0003700,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016597,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0052689,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:0140110,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141	6.1.1.7	0.000000000000000000000000000000000000000000000000000000000000000000008717	235.0
DYD3_k127_5142740_3	Belongs to the CinA family	K03743	GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016811,GO:0019159	3.5.1.42	0.0000000000000000000000000000000000000000004783	162.0
DYD3_k127_5142740_4	Modulates RecA activity	K03565	-	-	0.00000000000000000000000000003375	123.0
DYD3_k127_5142740_5	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester	K01975	-	3.1.4.58	0.000000000000000000000952	102.0
DYD3_k127_5142740_6	that it carries out the mismatch recognition step. This protein has a weak ATPase activity	K03555	GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391	-	0.00000000002151	64.0
DYD3_k127_5167899_0	Helicase	K03722	-	3.6.4.12	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828	336.0
DYD3_k127_5167899_1	phosphate regulon transcriptional regulatory protein PhoB	K07657	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007337	290.0
DYD3_k127_5167899_2	PFAM Peptidase M22, glycoprotease	K14742	-	-	0.000000000000000000000000000000000000000000000009092	181.0
DYD3_k127_5167899_3	Histidine kinase	K07636	GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0004721,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016021,GO:0016036,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0016787,GO:0016788,GO:0016791,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0031224,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0035556,GO:0036211,GO:0042578,GO:0042594,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071496,GO:0071704,GO:0071944,GO:0140096,GO:1901564	2.7.13.3	0.000000000000000000000000000155	126.0
DYD3_k127_5173165_0	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues	K01299	-	3.4.17.19	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005845	409.0
DYD3_k127_5173165_1	transporter	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004671	376.0
DYD3_k127_5173165_2	OsmC-like protein	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184	292.0
DYD3_k127_5173165_3	Carboxymuconolactone decarboxylase family	-	-	-	0.00000000000000000000000000000000000000000000000000000000005222	211.0
DYD3_k127_5173165_4	Hemolysin-type calcium-binding repeat (2 copies)	-	-	-	0.0000000000000000000000000000000000000000000000000000000006198	218.0
DYD3_k127_5173730_0	PFAM Orn Lys Arg decarboxylase major region	K01582,K01584	-	4.1.1.18,4.1.1.19	7.04e-240	752.0
DYD3_k127_5173730_1	Bacterial periplasmic substrate-binding proteins	K02030	-	-	0.000000000000000000000000000000000000000000000000000000000000000000039	244.0
DYD3_k127_5181318_0	COG0154 Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit and related amidases	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527	614.0
DYD3_k127_5181318_1	Amidohydrolase family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006496	555.0
DYD3_k127_5181318_2	Prokaryotic cytochrome b561	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000001862	266.0
DYD3_k127_5234800_0	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain	K04042	-	2.3.1.157,2.7.7.23	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006398	519.0
DYD3_k127_5234800_1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source	K00820	GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576	2.6.1.16	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126	506.0
DYD3_k127_5234800_2	Domain of unknown function (DUF4136)	-	-	-	0.000000000000000000000000000000000000000000000000000001039	198.0
DYD3_k127_5234800_3	Protein of unknown function, DUF481	-	-	-	0.0000000000000000000000000000000000000000000000000002045	199.0
DYD3_k127_5242241_0	epimerase dehydratase	K00329,K00356	-	1.6.5.3,1.6.99.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000149	289.0
DYD3_k127_5242241_1	Metallopeptidase family M24	K01262	GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0016787,GO:0019538,GO:0030145,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564	3.4.11.9	0.0000000000000000000000000000000000000000002225	173.0
DYD3_k127_524229_0	Na H antiporter	K03315	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000333	564.0
DYD3_k127_524229_1	2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase	K16165	-	3.7.1.20	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003967	307.0
DYD3_k127_524229_2	AI-2E family transporter	K11744	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0009372,GO:0009987,GO:0015562,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0044764,GO:0051179,GO:0051234,GO:0051704,GO:0055085,GO:0071944	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000823	304.0
DYD3_k127_524229_3	Thiol-disulfide isomerase and thioredoxins	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000007304	253.0
DYD3_k127_524229_4	Peptidase_C39 like family	-	-	-	0.000000000000001979	81.0
DYD3_k127_524229_5	-	-	-	-	0.00000002568	61.0
DYD3_k127_5243863_0	Belongs to the class-I aminoacyl-tRNA synthetase family	K01869	-	6.1.1.4	0.0	1196.0
DYD3_k127_5243863_1	Belongs to the sulfate adenylyltransferase family	K00958	-	2.7.7.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276	606.0
DYD3_k127_5243863_2	Catalyzes the synthesis of activated sulfate	K00860,K00958	-	2.7.1.25,2.7.7.4	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005144	335.0
DYD3_k127_5243863_3	Histidine biosynthesis bifunctional protein HisIE	K11755	-	3.5.4.19,3.6.1.31	0.0000000000000000000000000000000000000000000000000000000000000000003197	238.0
DYD3_k127_5243863_4	transcriptional regulator	-	-	-	0.0000000000000000000000000000000000000000000000000000000000006808	214.0
DYD3_k127_5243863_5	-	-	-	-	0.0000000000000000000000000000000000000000000000000000000002734	207.0
DYD3_k127_5243863_6	Belongs to the class-I aminoacyl-tRNA synthetase family	-	-	-	0.000000000000000000000000000000003518	130.0
DYD3_k127_5243863_7	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane	K03643	-	-	0.00000000000000000000001979	105.0
DYD3_k127_5243863_8	-	-	-	-	0.00000000000000000116	94.0
DYD3_k127_5252611_0	general secretion pathway protein G	K02456	-	-	0.000000000000000000000000000000000000000000000000000000003276	203.0
DYD3_k127_5252611_1	Rhomboid family	-	-	-	0.00000000000000000000000000000000005463	141.0
DYD3_k127_5252611_2	malonyl CoA-acyl carrier protein transacylase	K00645	GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.39	0.000000000000000000000000000000001644	132.0
DYD3_k127_5252611_3	general secretion pathway protein H	K02457	GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705	-	0.000000000000000000449	94.0
DYD3_k127_5252611_4	General secretion pathway protein	K02458	-	-	0.00000000000000002006	87.0
DYD3_k127_5252611_5	general secretion pathway protein	K02459	GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0098776	-	0.00008354	49.0
DYD3_k127_5258901_0	LysR family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000009959	250.0
DYD3_k127_5258901_1	Beta-lactamase class C and other penicillin binding proteins	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000217	246.0
DYD3_k127_5258901_2	Tetratricopeptide repeat	-	-	-	0.0000000000004245	78.0
DYD3_k127_5270321_0	MacB-like periplasmic core domain	K02004	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005523	450.0
DYD3_k127_5270321_1	ABC transporter	K02003	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000327	340.0
DYD3_k127_5276347_0	COG2366 Protein related to penicillin acylase	K07116	-	3.5.1.97	2.303e-289	908.0
DYD3_k127_5276347_1	hydrolase activity, acting on ester bonds	K07017	-	-	0.00000000000000000000000000000000000000000000367	175.0
DYD3_k127_5282345_0	TonB-dependent receptor	-	-	-	0.000000000000000000000000000005953	134.0
DYD3_k127_5282345_1	DNA-templated transcription, initiation	K03088,K03091	-	-	0.00000000000000000000000002762	114.0
DYD3_k127_5284145_0	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate	K00451	GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003824,GO:0004411,GO:0005488,GO:0005506,GO:0005575,GO:0006082,GO:0006355,GO:0006520,GO:0006558,GO:0006559,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0032993,GO:0042737,GO:0043167,GO:0043169,GO:0043436,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0045892,GO:0045934,GO:0046395,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051213,GO:0051252,GO:0051253,GO:0055114,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0140110,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141	1.13.11.5	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362	606.0
DYD3_k127_5284145_1	COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)	K16171	-	3.7.1.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129	474.0
DYD3_k127_5284145_2	Acetyltransferase (GNAT) domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000004387	229.0
DYD3_k127_5284145_3	imidazolonepropionase activity	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000001278	237.0
DYD3_k127_5284145_4	-	-	-	-	0.0000000000000000000000000000000000000000000000000004587	188.0
DYD3_k127_5284145_5	Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation	K00906	GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004721,GO:0005488,GO:0005524,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008772,GO:0009987,GO:0016208,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0042578,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050790,GO:0065007,GO:0065009,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564	2.7.11.5	0.000000000000000000000000000000000008165	140.0
DYD3_k127_5285126_0	Diguanylate cyclase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027	372.0
DYD3_k127_5285126_1	PQQ enzyme repeat	K00117	-	1.1.5.2	0.000000000000000000000000000000000000000000000000000000000000000000000002164	250.0
DYD3_k127_5285126_2	CHASE4 domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000078	239.0
DYD3_k127_5285126_3	PFAM ATP-binding region ATPase domain protein	-	-	-	0.00000000000000000000000005858	118.0
DYD3_k127_5295544_0	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly	K11942	-	5.4.99.13	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006886	332.0
DYD3_k127_5295544_1	Redoxin	-	-	-	0.000000000000000000000000000000000000000000000000000000000000008097	226.0
DYD3_k127_5298263_0	Domain of unknown function (DUF3362)	-	-	-	0.0	1195.0
DYD3_k127_5298263_1	Cytochrome c	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007085	293.0
DYD3_k127_5298263_2	YhhN family	-	-	-	0.0000000000000000000000000000002942	132.0
DYD3_k127_5298263_3	Polysaccharide deacetylase	-	-	-	0.000000000000000000000000000007004	124.0
DYD3_k127_5298263_4	Psort location Periplasmic, score	-	-	-	0.000003583	49.0
DYD3_k127_5313797_0	Transport permease protein	K01992	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000048	344.0
DYD3_k127_5313797_1	PFAM ABC transporter related	K01990	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000438	320.0
DYD3_k127_5313797_2	Belongs to the SOS response-associated peptidase family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000002014	223.0
DYD3_k127_5320699_0	FAD dependent oxidoreductase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000002897	267.0
DYD3_k127_5320699_1	Dipeptidase	K01273	-	3.4.13.19	0.000000000000000000000000000000000000000002671	161.0
DYD3_k127_5326081_0	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity	K02343	-	2.7.7.7	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087	529.0
DYD3_k127_5326081_1	Aldehyde dehydrogenase	K00294	-	1.2.1.88	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006368	312.0
DYD3_k127_5326081_2	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection	K09747	-	-	0.00000000000000000000000000000000000006242	147.0
DYD3_k127_5326081_3	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO	K06187	GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576	-	0.0000000002353	61.0
DYD3_k127_5330009_0	OST-HTH/LOTUS domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000636	372.0
DYD3_k127_5330009_1	COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs	K07303	-	1.3.99.16	0.0000000000000000000000000000000000000000000000000000000000000000000000002444	259.0
DYD3_k127_5330009_2	Recycling of diacylglycerol produced during the turnover of membrane phospholipid	K00901	-	2.7.1.107	0.0000000000000000000000000000000000000003565	152.0
DYD3_k127_5330009_3	Adenylate cyclase	-	-	-	0.000000007267	59.0
DYD3_k127_533975_0	Initiation factor 2 subunit family	K08963	-	5.3.1.23	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301	441.0
DYD3_k127_533975_1	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	K01491	GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114	1.5.1.5,3.5.4.9	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008383	385.0
DYD3_k127_533975_2	dienelactone hydrolase	K01061	-	3.1.1.45	0.00000000000000000000000000000000000000000000000000000000000000000000003751	243.0
DYD3_k127_533975_3	PFAM Class II aldolase	-	-	-	0.0000000000000000000000000000000000000000000000000001045	197.0
DYD3_k127_533975_4	Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family	K00569	-	2.1.1.67	0.000000000000000000000000000000000000000000000007555	180.0
DYD3_k127_533975_5	PFAM DoxX family protein	K16937	-	1.8.5.2	0.0000000000000001093	88.0
DYD3_k127_533975_6	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	K03832	-	-	0.000001308	57.0
DYD3_k127_5381594_0	gamma-glutamyltranspeptidase	K00681	-	2.3.2.2,3.4.19.13	5.344e-205	649.0
DYD3_k127_5381594_1	Helix-turn-helix domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004208	484.0
DYD3_k127_539371_0	AMP-binding enzyme	K00666	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057	509.0
DYD3_k127_539371_1	Metallopeptidase family M24	K01262	GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0016787,GO:0019538,GO:0030145,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564	3.4.11.9	0.00000000000000000000000000000000000000000000007958	188.0
DYD3_k127_5407924_0	Zn-dependent dipeptidase, microsomal dipeptidase	K01273	-	3.4.13.19	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007711	484.0
DYD3_k127_5407924_1	Amidohydrolase family	K06015	-	3.5.1.81	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577	430.0
DYD3_k127_5407924_2	PFAM amidohydrolase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000002534	247.0
DYD3_k127_5430039_0	COG0471 Di- and tricarboxylate transporters	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008678	546.0
DYD3_k127_5430039_1	Two component transcriptional regulator, winged helix family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000005049	240.0
DYD3_k127_5430039_2	histidine kinase HAMP region domain protein	-	-	-	0.000000000000000000000000000000000000000000000000297	182.0
DYD3_k127_5430039_3	Pyridine nucleotide-disulphide oxidoreductase	K00384	-	1.8.1.9	0.000000004378	57.0
DYD3_k127_5444162_0	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine	K01696	GO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.2.1.20	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943	434.0
DYD3_k127_5444162_1	Diguanylate cyclase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004514	385.0
DYD3_k127_5444162_2	The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate	K01695	-	4.2.1.20	0.000000000000000000000000000000000000000000000000000000001077	211.0
DYD3_k127_5444162_3	Sigma-70 region 2	K03088	-	-	0.0000000000000000000000000000000000000000001046	167.0
DYD3_k127_5444162_4	Indole-3-glycerol phosphate synthase	K01609	GO:0000162,GO:0000287,GO:0003674,GO:0003824,GO:0004425,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016020,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043167,GO:0043169,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046219,GO:0046391,GO:0046394,GO:0046483,GO:0046872,GO:0071704,GO:0071944,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.1.1.48	0.00000000000000000000000000000000003847	141.0
DYD3_k127_5444162_5	Belongs to the TrpF family	K01817	-	5.3.1.24	0.00000000000000000000000000000915	128.0
DYD3_k127_5444162_6	Putative prokaryotic signal transducing protein	-	-	-	0.000000000000000000001158	98.0
DYD3_k127_5444162_7	-	-	-	-	0.00000715	56.0
DYD3_k127_5445394_0	COG1042 Acyl-CoA synthetase (NDP forming)	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281	610.0
DYD3_k127_5445394_1	Aldehyde dehydrogenase	K09472	-	1.2.1.99	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005393	547.0
DYD3_k127_5445394_2	Phytoene dehydrogenase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207	517.0
DYD3_k127_5445394_3	The glycine cleavage system catalyzes the degradation of glycine	K00605	-	2.1.2.10	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133	490.0
DYD3_k127_5445394_4	COG1233 Phytoene dehydrogenase and related	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000001355	258.0
DYD3_k127_5447385_0	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family	K00134	GO:0000166,GO:0000226,GO:0001817,GO:0001819,GO:0001906,GO:0001907,GO:0002376,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004365,GO:0004857,GO:0004866,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005811,GO:0005829,GO:0005856,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006417,GO:0006464,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007017,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009435,GO:0009605,GO:0009607,GO:0009620,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009987,GO:0010033,GO:0010466,GO:0010468,GO:0010506,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0010942,GO:0010951,GO:0012501,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016241,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016769,GO:0016903,GO:0017014,GO:0017144,GO:0017148,GO:0018119,GO:0018130,GO:0018193,GO:0018198,GO:0019222,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019730,GO:0019752,GO:0019828,GO:0019904,GO:0030162,GO:0030234,GO:0030414,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031341,GO:0031343,GO:0031640,GO:0031647,GO:0031965,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032787,GO:0032879,GO:0032880,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035605,GO:0035606,GO:0035821,GO:0036094,GO:0036211,GO:0042221,GO:0042802,GO:0042866,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043436,GO:0043891,GO:0043900,GO:0043902,GO:0043903,GO:0044003,GO:0044004,GO:0044068,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044364,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044531,GO:0044532,GO:0044533,GO:0045087,GO:0045861,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050662,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050832,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051287,GO:0051336,GO:0051346,GO:0051402,GO:0051701,GO:0051702,GO:0051704,GO:0051707,GO:0051709,GO:0051712,GO:0051716,GO:0051817,GO:0051818,GO:0051851,GO:0051852,GO:0051873,GO:0051883,GO:0052040,GO:0052042,GO:0052248,GO:0052330,GO:0052433,GO:0052501,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061134,GO:0061135,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0061844,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0070997,GO:0071310,GO:0071345,GO:0071346,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090087,GO:0090407,GO:0097159,GO:0097452,GO:0097718,GO:0098542,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903530,GO:1903532,GO:1904951,GO:1990904,GO:2000112,GO:2000113	1.2.1.12	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008928	546.0
DYD3_k127_5447385_1	Belongs to the phosphoglycerate kinase family	K00927	-	2.7.2.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807	549.0
DYD3_k127_5447385_2	Bacterial protein of unknown function (DUF839)	K07093	-	-	0.0000000000000000000000000000000000000000000000000000000001016	208.0
DYD3_k127_5454343_0	Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force	K15987	-	3.6.1.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206	477.0
DYD3_k127_5454343_1	Diguanylate cyclase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021	445.0
DYD3_k127_5457946_0	Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL	-	-	-	0.0	1133.0
DYD3_k127_5457946_1	Domain of Unknown Function with PDB structure (DUF3857)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674	457.0
DYD3_k127_5457946_2	NAD(P)-dependent	K07119	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349	385.0
DYD3_k127_5457946_3	Aerobic-type carbon monoxide dehydrogenase small subunit CoxS	K07302	-	1.3.99.16	0.000000000000000000000000000000000000000000000000000000000000000000000000072	251.0
DYD3_k127_5464754_0	alpha/beta hydrolase fold	K00641	-	2.3.1.31	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000259	282.0
DYD3_k127_5464754_1	DoxX	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000002008	255.0
DYD3_k127_5465335_0	PFAM OsmC family protein	K04063	-	-	0.00000000000000000000000000000000000000000000000000002197	193.0
DYD3_k127_5465335_1	-	-	-	-	0.0000000000000000000000003454	106.0
DYD3_k127_5465335_2	Protein of unknown function (DUF2721)	-	-	-	0.000000000000000000000004823	107.0
DYD3_k127_5465335_3	cAMP biosynthetic process	-	-	-	0.0000000000000000000009264	111.0
DYD3_k127_5482180_0	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans	K00975	-	2.7.7.27	5.371e-201	632.0
DYD3_k127_5482180_1	Synthesizes alpha-1,4-glucan chains using ADP-glucose	K00703	GO:0000271,GO:0003674,GO:0003824,GO:0004373,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008194,GO:0009011,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033554,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0050896,GO:0051716,GO:0055114,GO:0071704,GO:1901576	2.4.1.21	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274	316.0
DYD3_k127_5507913_0	PFAM Glutamyl glutaminyl-tRNA synthetase, class Ic, catalytic	K01886	-	6.1.1.18	1.466e-236	746.0
DYD3_k127_5507913_1	belongs to the Fur family	K09823	-	-	0.000000000000000000000000000000000000000000000000000001766	196.0
DYD3_k127_5507913_2	S-adenosyl-l-methionine hydroxide adenosyltransferase	K22205	-	-	0.000000000000000000000000000000000000000000000000414	185.0
DYD3_k127_5507913_3	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	K09125	-	-	0.00000000000000000000000000002035	119.0
DYD3_k127_5509384_0	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	K00822	-	2.6.1.18	5.554e-199	629.0
DYD3_k127_5509384_1	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	K12256	-	2.6.1.113	1.781e-197	624.0
DYD3_k127_5509384_2	glutamine synthetase	K01915	-	6.3.1.2	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507	523.0
DYD3_k127_5509384_3	Oxidoreductase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533	498.0
DYD3_k127_5509384_4	Belongs to the arginase family	K01480	-	3.5.3.11	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854	440.0
DYD3_k127_5509384_5	Aldehyde dehydrogenase family	K00140	-	1.2.1.18,1.2.1.27	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058	429.0
DYD3_k127_5509384_6	Glutamine	K07010	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598	308.0
DYD3_k127_5509384_7	Transcriptional regulator	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000008219	230.0
DYD3_k127_55225_0	self proteolysis	K03466,K06196,K12132	-	2.7.11.1	3.684e-207	676.0
DYD3_k127_55225_1	Tetratricopeptide repeat	-	-	-	0.00000000000000000000000000000000000003041	166.0
DYD3_k127_5526848_0	Prolyl oligopeptidase	K01322	-	3.4.21.26	9.036e-274	860.0
DYD3_k127_5526848_1	Extradiol ring-cleavage dioxygenase	K15777	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467	327.0
DYD3_k127_5526848_2	Cold shock protein domain	K03704	-	-	0.0000000000000000000000000000003333	123.0
DYD3_k127_5526848_3	Nuclease-related domain	-	-	-	0.00000000000000000000000000001002	125.0
DYD3_k127_5533433_0	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO	K06187	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000002411	263.0
DYD3_k127_5533433_1	3'-to-5' exoribonuclease specific for small oligoribonucleotides	K13288	GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004532,GO:0004536,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008946,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0016896,GO:0019439,GO:0034611,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901575	-	0.00000000000000000000000000000000000000000000000000000000000000000000000402	248.0
DYD3_k127_5533433_2	Protein of unknown function (DUF938)	-	-	-	0.000000000000000000000000000000000000000000000000000000002081	212.0
DYD3_k127_5533433_3	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit	K06949	-	3.1.3.100	0.00000000000000000000000000000000000000000000000000000001537	213.0
DYD3_k127_5533433_4	PFAM Histidine triad (HIT) protein	K02503	-	-	0.00000000000000000000000000000000000000000001033	168.0
DYD3_k127_5533433_5	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection	K09747	-	-	0.000000000000000000000000000003082	121.0
DYD3_k127_5533722_0	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592	448.0
DYD3_k127_5533722_1	Putative 2OG-Fe(II) oxygenase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007222	422.0
DYD3_k127_5533722_2	membrane	-	-	-	0.000000000000000000000000000006013	121.0
DYD3_k127_5541648_0	COG1541 Coenzyme F390 synthetase	-	-	-	2.786e-208	652.0
DYD3_k127_5541648_1	E COG0620 Methionine synthase II (cobalamin-independent)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004595	530.0
DYD3_k127_5541648_2	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation	K00549	-	2.1.1.14	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005814	507.0
DYD3_k127_5541648_3	ribosomal rna small subunit methyltransferase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006681	445.0
DYD3_k127_5541648_4	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)	K06169	-	-	0.00000000000000000000000000000000000000000000000001362	185.0
DYD3_k127_5559708_0	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III	K01599	GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006725,GO:0006778,GO:0006779,GO:0006780,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009064,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019353,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0033526,GO:0034641,GO:0042168,GO:0042440,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046394,GO:0046483,GO:0046501,GO:0046502,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605	4.1.1.37	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626	497.0
DYD3_k127_5559708_1	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)	K01591	GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	4.1.1.23	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000733	322.0
DYD3_k127_5559708_2	Activates fatty acids by binding to coenzyme A	K01897	-	6.2.1.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003232	276.0
DYD3_k127_5559708_3	Belongs to the dGTPase family. Type 2 subfamily	K01129	-	3.1.5.1	0.000000000000000000000000000000000000000001161	161.0
DYD3_k127_5576270_0	receptor	K02014	-	-	4.736e-210	685.0
DYD3_k127_5576270_1	Alpha beta	-	-	-	0.000000001147	59.0
DYD3_k127_5587938_0	Pyridine nucleotide-disulphide oxidoreductase	K00266	-	1.4.1.13,1.4.1.14	1.177e-223	701.0
DYD3_k127_5587938_1	Glutamate synthase	K00265	GO:0003674,GO:0003824,GO:0004355,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019676,GO:0019740,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045181,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.4.1.13,1.4.1.14	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008111	399.0
DYD3_k127_5607707_0	lysine biosynthetic process via aminoadipic acid	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007386	308.0
DYD3_k127_5607707_1	Threonyl and Alanyl tRNA synthetase second additional domain	K07050	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000005532	265.0
DYD3_k127_5607707_2	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan	K01778	-	5.1.1.7	0.000000000000000000000000000000000000000000000000000000001417	222.0
DYD3_k127_5607707_3	COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit	K00479	-	-	0.0000000000000000000000007173	104.0
DYD3_k127_5607707_4	Kdo2-lipid A biosynthetic process	K02517,K20543,K22311	-	2.3.1.241,2.3.1.265	0.000000005005	68.0
DYD3_k127_5608602_0	glutamine synthetase	K01915	GO:0003674,GO:0003824,GO:0006576,GO:0006595,GO:0006598,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009308,GO:0009310,GO:0009445,GO:0009447,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0034024,GO:0034641,GO:0042402,GO:0044106,GO:0044237,GO:0071704,GO:0097164,GO:1901564,GO:1901565,GO:1901575	6.3.1.2	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008697	428.0
DYD3_k127_5608602_1	Major Facilitator Superfamily	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107	428.0
DYD3_k127_5608602_2	helix_turn_helix isocitrate lyase regulation	-	-	-	0.0000000000000000000000000000000000000000000000000001238	194.0
DYD3_k127_5608602_3	efflux protein, MATE family	K03327	-	-	0.000000000000000000000192	105.0
DYD3_k127_561646_0	Belongs to the FPP GGPP synthase family	K02523	GO:0003674,GO:0003824,GO:0004659,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009108,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0042180,GO:0042181,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663	2.5.1.90	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006203	373.0
DYD3_k127_561646_1	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	K03585	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000002355	264.0
DYD3_k127_561646_2	Belongs to the bacterial ribosomal protein bL27 family	K02899	-	-	0.000000000000000000000000000000000008196	137.0
DYD3_k127_561646_3	This protein binds to 23S rRNA in the presence of protein L20	K02888	-	-	0.000000000000000000000000000007062	126.0
DYD3_k127_561646_4	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control	K03979	-	-	0.000000000000000000000006379	103.0
DYD3_k127_561646_5	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	K18138	-	-	0.00000000000003519	74.0
DYD3_k127_5623476_0	Signal transduction histidine kinase	-	-	-	0.00000000006598	75.0
DYD3_k127_5623476_1	cyclic-guanylate-specific phosphodiesterase activity	-	-	-	0.0001347	54.0
DYD3_k127_5632592_0	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	K07250	-	2.6.1.19,2.6.1.22	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108	464.0
DYD3_k127_5632592_1	aldehyde dehydrogenase (NAD) activity	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003878	371.0
DYD3_k127_5632930_0	COG1943 Transposase and inactivated derivatives	K07491	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000959	240.0
DYD3_k127_5632930_1	Major Facilitator Superfamily	-	-	-	0.000000000000000000000000000000000000000007979	160.0
DYD3_k127_5632930_3	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	K03520	-	1.2.5.3	0.000000000008711	66.0
DYD3_k127_5637048_0	) H( ) antiporter that extrudes sodium in exchange for external protons	K03313	-	-	3.141e-268	838.0
DYD3_k127_5637048_1	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family	K03307	-	-	7.646e-215	678.0
DYD3_k127_5637048_2	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	K00384	-	1.8.1.9	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301	524.0
DYD3_k127_5637048_3	Belongs to the pirin family	K06911	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006866	341.0
DYD3_k127_5642384_0	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid	-	-	-	0.000000000000000000000000000000000000000000000000000006589	201.0
DYD3_k127_5642384_1	Cysteine rich repeat	-	-	-	0.000000000000000000000000000000000000000001518	159.0
DYD3_k127_5642384_2	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family	K14392	-	-	0.00001436	49.0
DYD3_k127_565256_0	Polymer-forming cytoskeletal	-	-	-	0.00000000000000000000000000000000001702	142.0
DYD3_k127_565256_2	Trypsin	-	-	-	0.000000002091	60.0
DYD3_k127_566059_0	Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485	599.0
DYD3_k127_566059_1	family UPF0016	-	-	-	0.00000000000000000001935	93.0
DYD3_k127_5662555_0	Hydantoinase/oxoprolinase N-terminal region	K01469	-	3.5.2.9	1.5e-321	1006.0
DYD3_k127_5662555_1	Putative member of DMT superfamily (DUF486)	-	-	-	0.0000000000000000000000000000000000000000000000000000000073	203.0
DYD3_k127_5662555_2	Phage tail sheath C-terminal domain	K06907	-	-	0.00000000000000000000000000000000000000000000000001411	199.0
DYD3_k127_5662555_3	Pyridoxal-phosphate dependent enzyme	K05396	-	4.4.1.15	0.0000000000000000000000000000000000000000000000001026	191.0
DYD3_k127_5662555_4	Methyltransferase domain	-	-	-	0.000000004276	61.0
DYD3_k127_5683101_0	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	K03520	-	1.2.5.3	9.419e-245	777.0
DYD3_k127_5683101_1	Protein involved in receptor activity and transport	K02014	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044	483.0
DYD3_k127_5683101_2	Major Facilitator Superfamily	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004919	396.0
DYD3_k127_5683101_3	FAD binding domain	K05712	-	1.14.13.127	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394	349.0
DYD3_k127_5743118_0	Acetylornithine deacetylase Succinyl-diaminopimelate	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508	494.0
DYD3_k127_5743118_1	Amidohydrolase family	K06015	-	3.5.1.81	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002138	371.0
DYD3_k127_5743118_2	Domain of unknown function (DUF4442)	-	-	-	0.0000000000000000000000000000000000000007964	153.0
DYD3_k127_5743118_3	Domain of unknown function (DUF4389)	-	-	-	0.000000000000000009795	89.0
DYD3_k127_5743118_4	Ribosomal protein L7/L12 C-terminal domain	-	-	-	0.0000926	49.0
DYD3_k127_5755104_0	Aminomethyltransferase folate-binding domain	K15064	-	-	3.528e-219	690.0
DYD3_k127_5755104_1	KR domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236	414.0
DYD3_k127_5755104_2	SnoaL-like domain	-	-	-	0.0000000000000000000000000000004201	130.0
DYD3_k127_5760784_0	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase	K14162	-	2.7.7.7	0.0	1042.0
DYD3_k127_5760784_1	PFAM Type II secretion system protein E	K02454	-	-	2.247e-211	668.0
DYD3_k127_5760784_2	General secretion pathway protein F	K02455	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117	428.0
DYD3_k127_5760784_3	secretion system protein	K02453	-	-	0.00000000000000000000000000000000000000000000000009803	183.0
DYD3_k127_5764299_0	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs	K05539	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969	417.0
DYD3_k127_5764299_1	protein methyltransferase activity	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007513	287.0
DYD3_k127_5764679_0	protease with the C-terminal PDZ domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018	575.0
DYD3_k127_5764679_1	EamA-like transporter family	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000004366	234.0
DYD3_k127_5764679_2	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP	K08591	-	2.3.1.15	0.00000000000000000000000000000000000000000000001592	183.0
DYD3_k127_5764679_3	PFAM Diacylglycerol kinase, catalytic	-	-	-	0.0000000000000000000000000000000000000000001654	170.0
DYD3_k127_5764679_4	integral membrane protein	-	-	-	0.00000000000000000000000000000000000000005621	162.0
DYD3_k127_5781078_0	Plays a role in the regulation of phosphate uptake	K02039	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000006964	273.0
DYD3_k127_5781078_1	Putative porin	-	GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944	-	0.00000000000000000000000000000000000000000000000000000002445	211.0
DYD3_k127_5781078_2	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein	K03611	-	-	0.00000000000000000000000000000000001768	141.0
DYD3_k127_5789645_0	COG1960 Acyl-CoA dehydrogenases	K00249	-	1.3.8.7	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264	591.0
DYD3_k127_5789645_1	FAD linked oxidase	-	-	-	0.000000000000000000000000000000000000000003923	160.0
DYD3_k127_5792894_0	-	-	-	-	0.0000000000000000000000000000001401	128.0
DYD3_k127_5792894_1	Late embryogenesis abundant protein	-	-	-	0.0000000000005757	76.0
DYD3_k127_5792894_3	Bacterial protein of unknown function (DUF924)	-	-	-	0.00000000185	63.0
DYD3_k127_5792894_4	Cupin 2, conserved barrel domain protein	-	-	-	0.00005527	51.0
DYD3_k127_5792990_0	Acyltransferase	-	-	-	4.247e-220	699.0
DYD3_k127_5792990_1	Surface antigen variable number	K07001	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484	438.0
DYD3_k127_5792990_2	AAA-like domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000001378	280.0
DYD3_k127_5792990_3	-	-	-	-	0.00000000000751	70.0
DYD3_k127_5800073_0	Protein tyrosine kinase	K12132	-	2.7.11.1	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003537	539.0
DYD3_k127_5800073_1	ECF sigma factor	-	-	-	0.00000000000000000000000000000000000000003473	162.0
DYD3_k127_5800073_2	Involved in the tonB-independent uptake of proteins	K03641,K10117	-	-	0.0000000000002743	79.0
DYD3_k127_5805535_0	synthase	K01641,K15311	-	2.3.3.10	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006625	424.0
DYD3_k127_5805535_1	Domain of unknown function (DUF4399)	-	-	-	0.00000000000000000000000000000000001123	147.0
DYD3_k127_5805535_2	Protein of unknown function (DUF3667)	-	-	-	0.0000000000000000000000000000000002465	148.0
DYD3_k127_5805973_0	Aminotransferase class-V	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000002545	286.0
DYD3_k127_5805973_1	Adenylate cyclase	-	-	-	0.00000000000000000006566	92.0
DYD3_k127_5805973_2	-	-	-	-	0.0000000000628	68.0
DYD3_k127_5807913_0	Polysaccharide biosynthesis protein	K15894	-	4.2.1.115	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116	471.0
DYD3_k127_5807913_1	DegT DnrJ EryC1 StrS aminotransferase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008074	321.0
DYD3_k127_5813113_0	Ornithine cyclodeaminase/mu-crystallin family	K01750,K19743	-	1.5.1.1,4.3.1.12	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071	320.0
DYD3_k127_5813113_1	NMT1-like family	-	-	-	0.000000000000000000000000000000000000002798	162.0
DYD3_k127_5813113_2	NnrU protein	-	-	-	0.000000000000000000000000000003017	124.0
DYD3_k127_5813113_3	MltA-interacting protein MipA	K07274	-	-	0.00000000000007803	85.0
DYD3_k127_5813113_4	-	-	-	-	0.000005818	56.0
DYD3_k127_583494_0	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system	K01736	-	4.2.3.5	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000253	545.0
DYD3_k127_583494_1	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate	K00133	-	1.2.1.11	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517	499.0
DYD3_k127_583494_2	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA	K01963	-	2.1.3.15,6.4.1.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003293	415.0
DYD3_k127_583494_3	Belongs to the folylpolyglutamate synthase family	K11754	GO:0003674,GO:0003824,GO:0004326,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006761,GO:0006807,GO:0008150,GO:0008152,GO:0008841,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046452,GO:0046483,GO:0046900,GO:0046901,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	6.3.2.12,6.3.2.17	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005456	292.0
DYD3_k127_583494_4	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs	K06173	GO:0000049,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363	5.4.99.12	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007605	286.0
DYD3_k127_583494_5	FimV C-terminal	K08086	-	-	0.0000000000000000000000000000000000000000000000000000000000000000001898	262.0
DYD3_k127_5837501_0	L,D-transpeptidase catalytic domain	K16291	-	-	0.00000000000000000000000000000000000000003077	158.0
DYD3_k127_5837501_1	Phospholipid N-methyltransferase	-	-	-	0.00000000000000000000000000004339	127.0
DYD3_k127_5837501_2	Pyridoxal-phosphate dependent enzyme	K05396	-	4.4.1.15	0.000000001512	64.0
DYD3_k127_5841738_0	acyl-CoA transferases carnitine dehydratase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751	465.0
DYD3_k127_5841738_1	PD-(D/E)XK nuclease superfamily	K01144	-	3.1.11.5	0.0000000000000000000000000000000000000001791	167.0
DYD3_k127_5843994_0	aminotransferase	K00813,K00832	-	2.6.1.1,2.6.1.57	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002638	434.0
DYD3_k127_5843994_1	Zn-dependent hydrolases including glyoxylases	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006486	328.0
DYD3_k127_5843994_2	-	-	-	-	0.000000000000000000000000000000000000000000000000000001782	208.0
DYD3_k127_5843994_3	Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria	-	-	-	0.0000000000000000000001015	102.0
DYD3_k127_5843994_4	PFAM aminotransferase class I and II	K00813,K00832	-	2.6.1.1,2.6.1.57	0.000000000003739	66.0
DYD3_k127_5848519_0	COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II	K01897,K18661	-	6.2.1.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003624	563.0
DYD3_k127_5848519_1	NmrA-like family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459	301.0
DYD3_k127_5848519_2	Malonate transporter MadL subunit	-	-	-	0.00000000000000000000000000000000000000002966	154.0
DYD3_k127_5848519_3	Malonate/sodium symporter MadM subunit	-	-	-	0.00000003778	56.0
DYD3_k127_5869013_0	Dehydrogenase	K00117	-	1.1.5.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412	447.0
DYD3_k127_5869013_1	Protein conserved in bacteria	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048	428.0
DYD3_k127_5869013_2	Membrane protein TerC	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000562	350.0
DYD3_k127_5869013_3	D-amino acid dehydrogenase	K00285	-	1.4.5.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006986	291.0
DYD3_k127_5869013_4	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)	K09880	-	3.1.3.77	0.0000000000000000000000000000000000000000000000000000000000000000000000008219	258.0
DYD3_k127_5869013_5	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway	K08967	-	1.13.11.53,1.13.11.54	0.000000000000000000000000000000000000000000000000000000000000000000000819	241.0
DYD3_k127_5869013_6	Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P)	K08964,K22130	-	4.1.1.104,4.2.1.109	0.000000000000000000000000000000000000000000000000006778	188.0
DYD3_k127_5869013_8	-	-	-	-	0.0000000000000000000000000000000005856	136.0
DYD3_k127_5901915_0	PFAM Band 7 protein	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003289	433.0
DYD3_k127_5901915_1	TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit	K00239,K00244	-	1.3.5.1,1.3.5.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004231	437.0
DYD3_k127_5901915_2	Succinate dehydrogenase/Fumarate reductase transmembrane subunit	K00246	-	-	0.0000000000000000000000000000453	130.0
DYD3_k127_5901915_3	COG1585 Membrane protein implicated in regulation of membrane protease activity	K07340	-	-	0.00000002506	61.0
DYD3_k127_5932965_0	TonB dependent receptor	-	-	-	1.077e-318	1004.0
DYD3_k127_5932965_1	Catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive	-	-	-	2.054e-280	873.0
DYD3_k127_5932965_10	Xylose isomerase domain protein TIM barrel	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000004675	269.0
DYD3_k127_5932965_11	alpha/beta hydrolase fold	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000008543	253.0
DYD3_k127_5932965_12	Bacterial regulatory proteins, tetR family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000621	224.0
DYD3_k127_5932965_13	Catalyzes a trans-dehydration via an enolate intermediate	K03786	-	4.2.1.10	0.00000000000000000000000000000000000000000000000007759	187.0
DYD3_k127_5932965_14	Dehydroquinase class II	K03786	-	4.2.1.10	0.00000000000000000000002394	105.0
DYD3_k127_5932965_15	-	-	-	-	0.0000000000000000003015	91.0
DYD3_k127_5932965_2	COG1012 NAD-dependent aldehyde dehydrogenases	K13922,K15515	-	1.2.1.81,1.2.1.87	5.931e-209	658.0
DYD3_k127_5932965_3	Major facilitator superfamily MFS_1	K08194	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002152	560.0
DYD3_k127_5932965_4	Carboxylesterase family	K03929	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249	557.0
DYD3_k127_5932965_5	4-hydroxyphenylpyruvate dioxygenase	K00457	-	1.13.11.27	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843	557.0
DYD3_k127_5932965_6	Citrate synthase, C-terminal domain	K01647	-	2.3.3.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005026	391.0
DYD3_k127_5932965_7	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)	K02433	-	6.3.5.6,6.3.5.7	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000605	395.0
DYD3_k127_5932965_8	PFAM SMP-30 Gluconolaconase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006539	358.0
DYD3_k127_5932965_9	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)	K00014	-	1.1.1.25	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008843	320.0
DYD3_k127_5935372_0	-	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000004917	270.0
DYD3_k127_5935372_1	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K07662	-	-	0.0000000000000000000000000000000000000000000000000000000000001609	221.0
DYD3_k127_5935372_2	Evidence 2a Function of homologous gene experimentally demonstrated in an other organism	K02484,K07640,K07642	-	2.7.13.3	0.00000000000000000000000000000005348	137.0
DYD3_k127_5935372_3	Serine threonine protein kinase	-	-	-	0.0000000000000000000000000001979	132.0
DYD3_k127_5935372_4	ATP-independent chaperone mediated protein folding	K06006	-	-	0.00000000005404	69.0
DYD3_k127_5935372_5	-	-	-	-	0.00000001486	66.0
DYD3_k127_5968405_0	Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate	K07516	-	1.1.1.35	3.508e-225	720.0
DYD3_k127_5968405_1	Steryl acetyl hydrolase	K14731	-	3.1.1.83	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000837	291.0
DYD3_k127_5968405_2	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions	K05524	-	-	0.000000000000000000000000000000000000000000000000000002725	192.0
DYD3_k127_5968405_3	N2227	K19787	GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259	2.1.1.22	0.000000002221	70.0
DYD3_k127_6027467_0	Catalyzes cross-linking of the peptidoglycan cell wall at the division septum	K03587	-	3.4.16.4	1.741e-195	625.0
DYD3_k127_6027467_1	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan	K01928	-	6.3.2.13	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264	404.0
DYD3_k127_6027467_10	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein	K01929	GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008766,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0047480,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576	6.3.2.10	0.0000000007546	63.0
DYD3_k127_6027467_2	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA	K03438	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.199	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008724	325.0
DYD3_k127_6027467_3	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA	K07056	-	2.1.1.198	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007204	301.0
DYD3_k127_6027467_4	PFAM LppC	K07121	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002073	310.0
DYD3_k127_6027467_5	Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate	K03271,K12961	-	5.3.1.28	0.00000000000000000000000000000000000000000000000000000000000000000002771	238.0
DYD3_k127_6027467_6	Belongs to the MraZ family	K03925	-	-	0.0000000000000000000000000000000000000000000000000000000000001548	215.0
DYD3_k127_6027467_7	Belongs to the UPF0102 family	K07460	-	-	0.000000000000000000000000000007551	122.0
DYD3_k127_6027467_8	LppC putative lipoprotein	-	-	-	0.00000000000000000002298	94.0
DYD3_k127_6027467_9	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic	K03586	-	-	0.00000000000000041	83.0
DYD3_k127_6046666_0	Sugar phosphate permease	K02445	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187	487.0
DYD3_k127_6046666_1	ABC-type uncharacterized transport system	-	-	-	0.000000000000000000000000000000000000000000000000000004089	198.0
DYD3_k127_6046666_2	Domain of unknown function (DUF4340)	-	-	-	0.00000000000000000000000000000000000001844	160.0
DYD3_k127_6046666_3	TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3	K20866	-	3.1.3.10	0.000000000000000000000000000000000001301	147.0
DYD3_k127_6046666_4	Belongs to the aspartate glutamate racemases family	K01779	-	5.1.1.13	0.00000000000000000000000000004567	118.0
DYD3_k127_6046666_5	-	-	-	-	0.00001778	53.0
DYD3_k127_6050018_0	Amidohydrolase	K03392	-	4.1.1.45	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395	496.0
DYD3_k127_6050018_1	Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively	K01556	-	3.7.1.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002777	484.0
DYD3_k127_6050018_2	Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid	K00486	GO:0003674,GO:0003824,GO:0004497,GO:0008150,GO:0008152,GO:0009058,GO:0016491,GO:0019748,GO:0044550,GO:0055114	1.14.13.9	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014	392.0
DYD3_k127_6050018_3	Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate	K00452	-	1.13.11.6	0.000000000000000000000000000000000000000006982	155.0
DYD3_k127_605296_0	xanthine dehydrogenase a b hammerhead	K11177	-	1.17.1.4	4.774e-201	653.0
DYD3_k127_605296_1	Carbon starvation protein	K06200	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:0071944	-	1.695e-198	625.0
DYD3_k127_605296_10	Cytochrome c	-	-	-	0.0000000000000000000000000000000000000000000000002803	190.0
DYD3_k127_605296_11	-	-	-	-	0.0000000000000000000000000000000000000179	154.0
DYD3_k127_605296_12	-	-	-	-	0.0000000000000000291	85.0
DYD3_k127_605296_13	formate dehydrogenase	K00127	-	-	0.0000001672	61.0
DYD3_k127_605296_2	Monoamine oxidase	K00274	-	1.4.3.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173	563.0
DYD3_k127_605296_3	Protein of unknown function (DUF3604)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003657	520.0
DYD3_k127_605296_4	amine dehydrogenase activity	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647	517.0
DYD3_k127_605296_5	HupE / UreJ protein	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006304	421.0
DYD3_k127_605296_6	PFAM Molybdopterin dehydrogenase, FAD-binding	K11178	-	1.17.1.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009624	379.0
DYD3_k127_605296_7	Translation Initiation Inhibitor YjgF Family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000005969	245.0
DYD3_k127_605296_8	2Fe-2S -binding	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000001828	230.0
DYD3_k127_605296_9	Carbon starvation protein	K06200	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051716,GO:0071496,GO:0071944	-	0.00000000000000000000000000000000000000000000000000003222	190.0
DYD3_k127_6055565_0	Domain of unknown function (DUF697)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923	483.0
DYD3_k127_6055565_1	50S ribosome-binding GTPase	K06883	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002939	383.0
DYD3_k127_6055565_2	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors	K03814	-	2.4.1.129	0.000000000000000000000000000000000000000000000000004132	187.0
DYD3_k127_6055565_3	methylated DNA-protein cysteine methyltransferase	K07443	GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005515,GO:0019899,GO:0097159,GO:1901363	-	0.000000000000000000000000000846	117.0
DYD3_k127_6055565_4	Protein of unknown function (DUF2490)	-	-	-	0.000000000000000000000000003594	119.0
DYD3_k127_6057424_0	E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate	K00164	-	1.2.4.2	0.0	1060.0
DYD3_k127_6057424_1	The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2)	K00658	-	2.3.1.61	0.0000000000000000000000000000000000002781	156.0
DYD3_k127_6066724_0	ABC transporter	K01990	GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279	460.0
DYD3_k127_6066724_1	transport, permease protein	K01992	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006168	396.0
DYD3_k127_6066724_2	efflux transmembrane transporter activity	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000001946	263.0
DYD3_k127_6066724_3	Glyoxalase bleomycin resistance protein dioxygenase	-	-	-	0.000000000000000000000000000000000000000001048	160.0
DYD3_k127_6070990_0	Transcriptional regulatory protein, C terminal	K02483	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006301	326.0
DYD3_k127_6070990_1	oxidoreductase activity	K07114	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000004394	266.0
DYD3_k127_6070990_2	Histidine kinase	-	-	-	0.0000000000000000000000009205	108.0
DYD3_k127_6086993_0	von Willebrand factor (vWF) type A domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004161	312.0
DYD3_k127_6086993_1	Secreted protein, containing von Willebrand factor (VWF) type	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914	309.0
DYD3_k127_6086993_2	Belongs to the ompA family	-	-	-	0.00000000000000000001328	102.0
DYD3_k127_6086993_3	ABC-type multidrug transport system ATPase component	-	-	-	0.00002855	51.0
DYD3_k127_6086993_4	diol metabolic process	K01724	-	4.2.1.96	0.00006045	46.0
DYD3_k127_6087529_0	Major royal jelly protein	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006911	421.0
DYD3_k127_6087529_1	mechanosensitive ion channel	K03442	-	-	0.000000000000000000000000000000000000000000000001138	179.0
DYD3_k127_6093172_0	Gamma-glutamyltranspeptidase	K00681	-	2.3.2.2,3.4.19.13	7.288e-245	769.0
DYD3_k127_6093172_1	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently	K03076	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005115	554.0
DYD3_k127_6093172_10	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity	K02886	GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	0.000000000000000000000000000000000000000000000000000000000000000000000009548	244.0
DYD3_k127_6093172_11	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center	K02933	-	-	0.000000000000000000000000000000000000000000000000000000000000000000001074	240.0
DYD3_k127_6093172_12	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body	K02988	GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904	-	0.00000000000000000000000000000000000000000000000000000000000000000002631	236.0
DYD3_k127_6093172_13	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome	K02874	-	-	0.000000000000000000000000000000000000000000000000000000000000002016	218.0
DYD3_k127_6093172_14	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome	K02948	-	-	0.00000000000000000000000000000000000000000000000000000000000003689	215.0
DYD3_k127_6093172_15	Ribosomal protein L17	K02879	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904	-	0.00000000000000000000000000000000000000000000000000003039	190.0
DYD3_k127_6093172_16	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	K02952	-	-	0.000000000000000000000000000000000000000000000000002905	184.0
DYD3_k127_6093172_17	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit	K02994	-	-	0.000000000000000000000000000000000000000000000002016	177.0
DYD3_k127_6093172_18	Binds to the 23S rRNA	K02876	-	-	0.0000000000000000000000000000000000000000000007768	169.0
DYD3_k127_6093172_19	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA	K02965	-	-	0.000000000000000000000000000000000000000005089	155.0
DYD3_k127_6093172_2	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	K03040	GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576	2.7.7.6	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005326	477.0
DYD3_k127_6093172_20	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance	K02881	-	-	0.0000000000000000000000000000000000000002068	152.0
DYD3_k127_6093172_21	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit	K02895	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	0.00000000000000000000000000000000000001578	147.0
DYD3_k127_6093172_22	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	K02890	-	-	0.00000000000000000000000000000000000009949	144.0
DYD3_k127_6093172_23	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site	K02954	-	-	0.000000000000000000000000000000003206	130.0
DYD3_k127_6093172_24	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA	K02961	-	-	0.00000000000000000000000000119	114.0
DYD3_k127_6093172_25	Ribosomal protein L30	K02907	-	-	0.00000000000000006554	82.0
DYD3_k127_6093172_26	Belongs to the universal ribosomal protein uL29 family	K02904	GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	0.0000000000000005096	81.0
DYD3_k127_6093172_27	Belongs to the bacterial ribosomal protein bL36 family	K02919	-	-	0.0000000000004818	70.0
DYD3_k127_6093172_3	Tryptophanyl-tRNA synthetase	K01867	-	6.1.1.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007974	477.0
DYD3_k127_6093172_4	Splits dipeptides with a prolyl residue in the C- terminal position	K01271	-	3.4.13.9	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001884	431.0
DYD3_k127_6093172_5	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation	K02982	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008173	326.0
DYD3_k127_6093172_6	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit	K02986	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636	309.0
DYD3_k127_6093172_7	Enoyl-(Acyl carrier protein) reductase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001222	294.0
DYD3_k127_6093172_8	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits	K02931	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000002231	273.0
DYD3_k127_6093172_9	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs	K02878	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000007191	244.0
DYD3_k127_611978_0	ribonuclease, Rne Rng family	K08301	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008566	564.0
DYD3_k127_611978_1	modulator of DNA gyrase	K03568	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733	444.0
DYD3_k127_611978_10	Could be involved in insertion of integral membrane proteins into the membrane	K08998	-	-	0.000000000000000000000000001095	114.0
DYD3_k127_611978_11	MerC mercury resistance protein	-	-	-	0.00000000000000003305	87.0
DYD3_k127_611978_12	tetraacyldisaccharide 4'-kinase activity	K09791	-	-	0.0000000000000003253	81.0
DYD3_k127_611978_2	Protein of unknown function	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005582	453.0
DYD3_k127_611978_3	DNA polymerase III, delta subunit	K02340	GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0032991,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902494,GO:1990234	2.7.7.7	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259	303.0
DYD3_k127_611978_4	Carbon-nitrogen hydrolase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008784	289.0
DYD3_k127_611978_5	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)	K00969	-	2.7.7.18	0.000000000000000000000000000000000000000000000000000000000000000002053	233.0
DYD3_k127_611978_6	Maf-like protein	K06287	-	-	0.0000000000000000000000000000000000000000000000000006926	191.0
DYD3_k127_611978_7	DALR_2	K01883	-	6.1.1.16	0.000000000000000000000000000000000000000000000000004555	185.0
DYD3_k127_611978_8	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA	K00783	-	2.1.1.177	0.000000000000000000000000000000000000000007585	158.0
DYD3_k127_611978_9	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation	K09710	-	-	0.000000000000000000000000000000000000009116	147.0
DYD3_k127_6120010_0	Oxidizes proline to glutamate for use as a carbon and nitrogen source	K13821	-	1.2.1.88,1.5.5.2	0.0	1153.0
DYD3_k127_6120010_1	Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide	K00639,K00652	-	2.3.1.29,2.3.1.47	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009861	559.0
DYD3_k127_6120010_10	NifU-like N terminal domain	K04488	-	-	0.0000000000000000000000000000000000000000009837	168.0
DYD3_k127_6120010_11	phosphohistidine phosphatase, SixA	K08296	-	-	0.00000000000000000000000000000000000000006458	157.0
DYD3_k127_6120010_12	assembly protein SufD	K09015	-	-	0.0000000000000000000000000000000000236	138.0
DYD3_k127_6120010_13	PFAM Tripartite ATP-independent periplasmic transporter, DctQ component	-	-	-	0.000000000000000000000000000005512	128.0
DYD3_k127_6120010_2	Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate	K00060	GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008270,GO:0008652,GO:0008743,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0030145,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0046870,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607	1.1.1.103	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002077	544.0
DYD3_k127_6120010_3	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine	K11717	-	2.8.1.7,4.4.1.16	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009632	540.0
DYD3_k127_6120010_4	PFAM TRAP C4-dicarboxylate transport system permease DctM subunit	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067	507.0
DYD3_k127_6120010_5	signal peptide peptidase	K04773	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034	482.0
DYD3_k127_6120010_6	PFAM TRAP dicarboxylate transporter- DctP subunit	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000001157	273.0
DYD3_k127_6120010_7	TRAP transporter T-component	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000001018	267.0
DYD3_k127_6120010_8	FeS assembly SUF system protein SufT	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000009157	252.0
DYD3_k127_6120010_9	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	K02884	-	-	0.00000000000000000000000000000000000000000000000000001147	190.0
DYD3_k127_6141545_0	Alpha-glucosidase	K01187	-	3.2.1.20	5.034e-228	718.0
DYD3_k127_6141545_1	Belongs to the glycosyl hydrolase 13 family	K21575	-	3.2.1.135	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241	556.0
DYD3_k127_6153238_0	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety	K12980	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009623	523.0
DYD3_k127_6153238_1	Phospholipase D. Active site motifs.	K06132	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106	488.0
DYD3_k127_6153238_2	COG1680 Beta-lactamase class C and other penicillin binding proteins	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008934	381.0
DYD3_k127_6153238_3	Oxidoreductase family, NAD-binding Rossmann fold	K10219	-	1.1.1.312	0.000000000000000000000000000000000000000000000000000000000000001124	219.0
DYD3_k127_6158154_0	related to penicillin acylase	K07116	-	3.5.1.97	1.643e-291	907.0
DYD3_k127_6163934_0	Histone deacetylase domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292	357.0
DYD3_k127_6163934_1	PQQ-like domain	-	-	-	0.00000000000000000000000000000000000000000003916	168.0
DYD3_k127_6163934_2	Enoyl-CoA hydratase/isomerase	K01692	-	4.2.1.17	0.000000000000000000000000000000002577	132.0
DYD3_k127_6170790_0	PFAM Aminotransferase class-III	K00819	-	2.6.1.13	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435	579.0
DYD3_k127_6170790_1	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	K00286	-	1.5.1.2	0.00000000000000000000000000000000000000000000000000000000000000000008646	241.0
DYD3_k127_6170790_2	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis	K06997	-	-	0.000000000000000000000000000000000000000000000000000000271	199.0
DYD3_k127_6170790_3	X-Pro dipeptidyl-peptidase (S15 family)	K07018	-	-	0.000000000000000000000000000000000000000000000000002884	191.0
DYD3_k127_6170790_4	Belongs to the bacterial histone-like protein family	-	-	-	0.0000000000000000000000000000002417	127.0
DYD3_k127_6170790_5	integral membrane protein	K02221	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	0.0000000000000000000000002813	112.0
DYD3_k127_6170790_6	Domain of unknown function (DUF4426)	-	-	-	0.0000000000000000000000003571	111.0
DYD3_k127_6170790_7	Thioredoxin-like [2Fe-2S] ferredoxin	K00334,K03943	-	1.6.5.3,1.6.99.3	0.000000000001132	80.0
DYD3_k127_6180683_0	Radical SAM superfamily	K01843	-	5.4.3.2	1.186e-208	655.0
DYD3_k127_6180683_1	Involved in arsenical resistance. Thought to form the channel of an arsenite pump	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035	527.0
DYD3_k127_6180683_2	COG0659 Sulfate permease and related transporters (MFS superfamily)	K03321	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000788	529.0
DYD3_k127_6180683_3	mechanosensitive ion channel	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205	465.0
DYD3_k127_6180683_4	Belongs to the D-alanine--D-alanine ligase family	K01921	-	6.3.2.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004624	441.0
DYD3_k127_6180683_5	polysaccharide deacetylase	-	-	-	0.000000000000000000000000000000000000000000000000000001456	198.0
DYD3_k127_6180683_6	PFAM Acetyltransferase (GNAT) family	-	-	-	0.0000000000000000000000000000000000001475	145.0
DYD3_k127_618824_0	Peptidase family M28	-	-	-	1.588e-212	681.0
DYD3_k127_618824_1	Metallopeptidase family M24	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005201	479.0
DYD3_k127_618824_2	Pyridoxal-phosphate dependent enzyme	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425	428.0
DYD3_k127_618824_3	Belongs to the aspartate glutamate racemases family	K01779	-	5.1.1.13	0.0000000000000000000000000000000000000000000000000000000006387	214.0
DYD3_k127_618824_4	COG1506 Dipeptidyl aminopeptidases acylaminoacyl-peptidases	-	-	-	0.000000000001679	67.0
DYD3_k127_6190663_0	Anti-ECFsigma factor ChrR	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002912	284.0
DYD3_k127_6190663_1	Glutathione-dependent formaldehyde-activating enzyme	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000004252	250.0
DYD3_k127_6190663_2	Tetratricopeptide repeats	K12132	-	2.7.11.1	0.00000000000000000000000000000000000000000009477	169.0
DYD3_k127_622184_0	Belongs to the Glu Leu Phe Val dehydrogenases family	K00261	-	1.4.1.3	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907	479.0
DYD3_k127_622184_1	Acetyltransferase (GNAT) domain	-	-	-	0.000000000000001742	80.0
DYD3_k127_622184_2	exo-alpha-(2->6)-sialidase activity	-	-	-	0.00000000003777	68.0
DYD3_k127_6232885_0	PFAM pfkB family carbohydrate kinase	K00847,K00856	-	2.7.1.20,2.7.1.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008882	304.0
DYD3_k127_6232885_1	Subtilisin-like serine	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000001334	237.0
DYD3_k127_6232885_2	-	-	-	-	0.000000000000000000000000000000000000000000000000000000000001617	222.0
DYD3_k127_6232885_3	COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases	-	-	-	0.0000000000000000000000000000000000000000000000000000001597	204.0
DYD3_k127_6232885_4	PFAM Outer membrane efflux protein	-	-	-	0.000000000000000000000000000000000000000008313	160.0
DYD3_k127_6232885_5	Domain of unknown function (DUF4956)	-	-	-	0.0000000000000000000000001491	115.0
DYD3_k127_6232885_6	SdiA-regulated	-	-	-	0.0000000000003255	82.0
DYD3_k127_6233116_0	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process	K03981	-	5.3.4.1	0.0000000000000000000000000000000000000000000000000000000002974	213.0
DYD3_k127_6233116_1	ADP-ribose pyrophosphatase	-	-	-	0.000000000000000000000000000000000000000000000000000001347	199.0
DYD3_k127_6233116_2	Belongs to the sigma-70 factor family. ECF subfamily	-	-	-	0.0000000000000001594	84.0
DYD3_k127_624231_0	Sodium:neurotransmitter symporter family	K03308	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008932	561.0
DYD3_k127_624231_1	TIGRFAM RNA polymerase sigma factor, sigma-70 family	K03088	-	-	0.0000000000000000000000000009139	119.0
DYD3_k127_624231_2	-	-	-	-	0.000000000000000000000001751	114.0
DYD3_k127_624231_3	HEAT repeats	-	-	-	0.0000000000002743	79.0
DYD3_k127_624231_5	-	-	-	-	0.00000008695	61.0
DYD3_k127_6259270_0	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction	K00962	-	2.7.7.8	0.0	1006.0
DYD3_k127_6259270_1	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	K02519	-	-	2.278e-277	876.0
DYD3_k127_6259270_2	Participates in both transcription termination and antitermination	K02600	-	-	9.681e-220	691.0
DYD3_k127_6259270_3	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs	K03177	-	5.4.99.25	0.000000000000000000000000000000000000000000000000000000000000000000000000000003789	271.0
DYD3_k127_6259270_4	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome	K02956	-	-	0.0000000000000000000000000000000002674	134.0
DYD3_k127_6259270_5	PFAM alpha beta hydrolase fold	K07019	GO:0003674,GO:0003824,GO:0006629,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0044237,GO:0044238,GO:0044255,GO:0050526,GO:0052689,GO:0071704	-	0.00000000000000000000000000000004419	127.0
DYD3_k127_6259270_6	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA	K02834	-	-	0.000000000000000000000002026	106.0
DYD3_k127_6259270_7	Required for maturation of 30S ribosomal subunits	K09748	-	-	0.00000002137	56.0
DYD3_k127_6260642_0	DNA segregation ATPase FtsK SpoIIIE	K03466	-	-	2.194e-282	887.0
DYD3_k127_6260642_1	AAA C-terminal domain	K07478	GO:0005575,GO:0005622,GO:0005623,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0030894,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005739	586.0
DYD3_k127_6260642_10	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine	K00684	-	2.3.2.6	0.000000000000000000000000000000000000000000000000000000000000000000000003043	254.0
DYD3_k127_6260642_11	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)	K03634	-	-	0.00000000000000000000000000000000000000157	159.0
DYD3_k127_6260642_12	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex	K02518	GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576	-	0.00000000000000000000000000000000001265	137.0
DYD3_k127_6260642_13	VanZ like family	-	-	-	0.00000002622	60.0
DYD3_k127_6260642_2	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)	K01875	-	6.1.1.11	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007131	574.0
DYD3_k127_6260642_3	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family	K00384	-	1.8.1.9	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003448	499.0
DYD3_k127_6260642_4	Belongs to the ClpA ClpB family	K03694	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005455	434.0
DYD3_k127_6260642_5	Na+/H+ antiporter family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913	425.0
DYD3_k127_6260642_6	NHL repeat	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228	407.0
DYD3_k127_6260642_7	Peptidogalycan biosysnthesis/recognition	K09919	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218	376.0
DYD3_k127_6260642_8	aminotransferase class I and II	K14155	-	4.4.1.8	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153	357.0
DYD3_k127_6260642_9	Fumarylacetoacetate (FAA) hydrolase family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004177	299.0
DYD3_k127_6272179_0	PFAM protein-L-isoaspartate(D-aspartate) O-methyltransferase	K00573	-	2.1.1.77	0.0000000000000000000000000000000000000000000000000000008178	200.0
DYD3_k127_6272179_1	SMART Rhodanese domain protein	-	-	-	0.000000000000000000000001435	113.0
DYD3_k127_6272179_2	Diguanylate cyclase	-	-	-	0.0000000000000000000001224	109.0
DYD3_k127_6272179_3	type I secretion outer membrane protein, TolC	K12340	-	-	0.0001744	49.0
DYD3_k127_6273608_0	cAMP biosynthetic process	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000009229	257.0
DYD3_k127_6273608_1	metal-dependent hydrolase with the TIM-barrel fold	-	-	-	0.00000000000000000000000000000000000000000000000000000001607	209.0
DYD3_k127_6274483_0	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)	K03655	GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494	3.6.4.12	2.591e-258	813.0
DYD3_k127_6274483_1	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate	K03179	-	2.5.1.39	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436	333.0
DYD3_k127_6274483_2	translation initiation inhibitor, yjgF family	-	-	-	0.00000000000000000000000000000000000000000000002203	173.0
DYD3_k127_6274483_3	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance	K01139	-	2.7.6.5,3.1.7.2	0.0000000000000000000000000000000000000000000006439	170.0
DYD3_k127_6274483_4	Competence protein	-	GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0015976,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575	-	0.000000000000000000000000000000000162	137.0
DYD3_k127_6283005_0	COG0306 Phosphate sulphate permeases	K03306	GO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0015291,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665	544.0
DYD3_k127_6283005_1	COG1392 Phosphate transport regulator (distant homolog of PhoU)	K07220	-	-	0.000000000000000000000000000000000000000000000000000000000005947	211.0
DYD3_k127_6283005_2	MatE	K03327	-	-	0.000000000000000000000000000000000000000000005027	176.0
DYD3_k127_6283005_3	SMART Tetratricopeptide domain protein	-	-	-	0.000000000000000001281	87.0
DYD3_k127_6345980_0	ATPases associated with a variety of cellular activities	K02065	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009128	293.0
DYD3_k127_6345980_1	ABC-type transport system involved in resistance to organic solvents permease component	K02066	-	-	0.0000000000000000000000000000000000000000000000000000000000007814	226.0
DYD3_k127_6345980_2	COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component	K02067	-	-	0.0000000000000000000000008616	117.0
DYD3_k127_6345980_3	PFAM Amidase	K02433	-	6.3.5.6,6.3.5.7	0.000000000000000000000001589	105.0
DYD3_k127_6345980_4	ABC-type transport auxiliary lipoprotein component	K18480	-	-	0.000000001356	67.0
DYD3_k127_6345980_5	-	-	-	-	0.0002263	45.0
DYD3_k127_6368953_0	Cyclic nucleotide-monophosphate binding domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772	461.0
DYD3_k127_6368953_1	Putative MetA-pathway of phenol degradation	-	-	-	0.000002302	55.0
DYD3_k127_6374641_0	Phosphotransfer between the C1 and C5 carbon atoms of pentose	K01839	-	5.4.2.7	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862	599.0
DYD3_k127_6374641_1	Belongs to the 5'-nucleotidase family	K01081	-	3.1.3.5	0.0000000000000000000000000000000000000000000008837	179.0
DYD3_k127_6374641_2	Acetyltransferase (GNAT) domain	-	-	-	0.0000000000000000000000000000000000000001476	158.0
DYD3_k127_6380972_0	Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell	K00982	-	2.7.7.42,2.7.7.89	7.033e-229	741.0
DYD3_k127_6380972_1	Zinc-finger domain	-	-	-	0.0000000000000000000000001704	106.0
DYD3_k127_6380972_2	Putative diguanylate phosphodiesterase	K03320	-	-	0.00000000001651	66.0
DYD3_k127_6381415_0	NADP oxidoreductase, coenzyme f420-dependent	K06988	-	1.5.1.40	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000562	317.0
DYD3_k127_6381415_1	Adenylate cyclase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000811	216.0
DYD3_k127_6381415_2	Cysteine-rich secretory protein family	-	-	-	0.000000000000000000000000000000000000000000000000000001275	202.0
DYD3_k127_6382020_0	Sodium:sulfate symporter transmembrane region	K14445	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599	320.0
DYD3_k127_6382020_1	Pyridoxamine 5'-phosphate oxidase	K07005	-	-	0.000000000000000000000000000000000000000000000000000000000006547	214.0
DYD3_k127_6387544_0	Radical SAM	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677	380.0
DYD3_k127_6390685_0	Hsp90 protein	K04079	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006950,GO:0006974,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0033554,GO:0042623,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716	-	8.904e-242	762.0
DYD3_k127_6390685_1	ABC-type glycine betaine transport system	K05845,K05846	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003248	316.0
DYD3_k127_6395233_0	Ammonium Transporter	K03320	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786	601.0
DYD3_k127_6395233_1	Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps	K01749	GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.5.1.61	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716	307.0
DYD3_k127_6395233_2	Histidine kinase	K08082	-	2.7.13.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000001028	272.0
DYD3_k127_6395233_3	Response regulator of the LytR AlgR family	K08083	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000002048	254.0
DYD3_k127_6395233_4	Belongs to the P(II) protein family	K04752	-	-	0.00000000000000000000000000000000000000000000000000008682	192.0
DYD3_k127_6395233_5	Uroporphyrinogen-III synthase HemD	K01719	-	4.2.1.75	0.000000000000000000000000000004382	128.0
DYD3_k127_6395233_6	Site-specific recombinase	-	-	-	0.0000000000000002271	83.0
DYD3_k127_6395233_7	Domain of unknown function (DUF4124)	-	-	-	0.000000003447	65.0
DYD3_k127_6397372_0	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA	K01895	-	6.2.1.1	4.763e-247	767.0
DYD3_k127_6397372_1	conserved protein, contains FHA domain	K11894,K11913	-	-	0.0000000000000000000000000000137	129.0
DYD3_k127_639830_0	Histidine kinase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859	592.0
DYD3_k127_639830_1	Cys/Met metabolism PLP-dependent enzyme	K01739	-	2.5.1.48	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004902	483.0
DYD3_k127_639830_10	Domain of unknown function (DUF1993)	K09983	-	-	0.0000000000000000000000000000000000000000000000000000003172	198.0
DYD3_k127_639830_11	Protein of unknown function, DUF	-	-	-	0.00000000000000000000000000000000002232	140.0
DYD3_k127_639830_12	-	-	-	-	0.000000000000000000000000000002127	127.0
DYD3_k127_639830_13	Phage shock protein A	K03615,K03969,K09749,K21471	-	-	0.00000000000000000000000000004047	126.0
DYD3_k127_639830_15	Belongs to the GST superfamily	K00799	-	2.5.1.18	0.0000003388	51.0
DYD3_k127_639830_2	Peptidase family M28	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715	473.0
DYD3_k127_639830_3	von Willebrand factor, type A	K11912	-	2.7.11.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519	436.0
DYD3_k127_639830_4	Transcriptional regulatory protein, C terminal	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005585	319.0
DYD3_k127_639830_5	EamA-like transporter family	K05786	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349	306.0
DYD3_k127_639830_6	Acid phosphatase	-	GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518	301.0
DYD3_k127_639830_7	Glutathione-dependent formaldehyde-activating enzyme	K03396	-	4.4.1.22	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000294	285.0
DYD3_k127_639830_8	ABC-type amino acid transport signal transduction systems periplasmic component domain	K02030,K10001	-	-	0.0000000000000000000000000000000000000000000000000000000000000009672	229.0
DYD3_k127_639830_9	involved in chromosome partitioning	K03496	-	-	0.000000000000000000000000000000000000000000000000000000000003033	218.0
DYD3_k127_6402626_0	PFAM deoxyhypusine synthase	K00809	-	2.5.1.46	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006053	532.0
DYD3_k127_6402626_1	Belongs to the agmatine deiminase family	K10536	-	3.5.3.12	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003434	442.0
DYD3_k127_6402626_2	Catalyzes the biosynthesis of agmatine from arginine	K01585	-	4.1.1.19	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009223	384.0
DYD3_k127_6402626_3	metal-dependent hydrolase with the TIM-barrel fold	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000003726	246.0
DYD3_k127_6402626_4	-	-	-	-	0.000000000613	66.0
DYD3_k127_6403087_0	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	-	-	-	0.000000000000000000000000000000000002061	144.0
DYD3_k127_6403087_1	COG0457 FOG TPR repeat	-	-	-	0.000000000000000000000004794	115.0
DYD3_k127_6403087_2	deoxyhypusine monooxygenase activity	-	-	-	0.000000000043	71.0
DYD3_k127_6403087_3	helix_turn_helix, Lux Regulon	-	-	-	0.00002518	55.0
DYD3_k127_6404260_0	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)	K00937	-	2.7.4.1	1.108e-255	811.0
DYD3_k127_6404260_1	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)	K01866	-	6.1.1.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265	517.0
DYD3_k127_6404260_2	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling	K09001	-	2.7.1.170	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004227	393.0
DYD3_k127_6404260_3	PFAM peptidase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755	379.0
DYD3_k127_6427485_0	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan	K01000	-	2.7.8.13	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007497	508.0
DYD3_k127_6427485_1	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein	K01929	-	6.3.2.10	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591	386.0
DYD3_k127_6427485_2	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)	K01925	-	6.3.2.9	0.0000000000000000000000000009157	118.0
DYD3_k127_6441778_0	Glutathione S-transferase, C-terminal domain	K00799,K11209	-	2.5.1.18	0.00000000000000000000000000000000000000000000000000000000000000000000000000982	257.0
DYD3_k127_6441778_1	DSBA-like thioredoxin domain	K14584	-	5.99.1.4	0.0000000000000000000000000000000000000000000000000002101	191.0
DYD3_k127_6441778_2	TamB, inner membrane protein subunit of TAM complex	K09800	-	-	0.00000000000000000000000000005351	121.0
DYD3_k127_6450522_0	Domain of unknown function (DUF4478)	K06966	-	3.2.2.10	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004793	610.0
DYD3_k127_6450522_1	L,D-transpeptidase catalytic domain	-	-	-	0.000000000000000000000000000000000000000011	164.0
DYD3_k127_6450522_2	Molecular chaperone. Has ATPase activity	K04079	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006950,GO:0006974,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0033554,GO:0042623,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716	-	0.00000000001986	69.0
DYD3_k127_6450800_0	COG1473 Metal-dependent amidase aminoacylase carboxypeptidase	K01436	-	-	5.133e-194	614.0
DYD3_k127_6450800_1	Fic/DOC family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309	479.0
DYD3_k127_6450800_2	FtsX-like permease family	K02004	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126	467.0
DYD3_k127_6450800_3	-	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000009672	229.0
DYD3_k127_6450800_4	cAMP biosynthetic process	-	-	-	0.0000000000000000000000000000000000000000000001769	189.0
DYD3_k127_6450800_5	-	-	-	-	0.0000000000000000000004677	104.0
DYD3_k127_6450800_6	MacB-like periplasmic core domain	K02004	-	-	0.0000000000000000000006426	97.0
DYD3_k127_6450800_7	N-formylglutamate amidohydrolase	-	-	-	0.00000000000000000001881	99.0
DYD3_k127_6452017_0	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen	K00990	GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006520,GO:0006541,GO:0006542,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008773,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0019538,GO:0019752,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0046394,GO:0070569,GO:0071704,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.7.59	2.255e-260	829.0
DYD3_k127_6452017_1	TIGRFAM methionine aminopeptidase, type I	K01265	-	3.4.11.18	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009263	413.0
DYD3_k127_6452017_2	Belongs to the transferase hexapeptide repeat family	K00674	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008666,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016749,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.3.1.117	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007064	389.0
DYD3_k127_6452017_3	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome	K02357	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418	367.0
DYD3_k127_6452017_4	Belongs to the universal ribosomal protein uS2 family	K02967	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334	351.0
DYD3_k127_6452017_5	Catalyzes the reversible phosphorylation of UMP to UDP	K09903	-	2.7.4.22	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467	338.0
DYD3_k127_6452017_6	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another	K02838	GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000003787	262.0
DYD3_k127_6452017_7	Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di-trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide	K00806	-	2.5.1.31	0.0000000000000000000000000000000000000000000000000000000001631	208.0
DYD3_k127_6452725_0	cAMP biosynthetic process	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001	365.0
DYD3_k127_6452725_1	receptor	K02014	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007096	299.0
DYD3_k127_6452725_2	Domain of unknown function (DUF5122) beta-propeller	-	-	-	0.0000000000000000000000000005175	132.0
DYD3_k127_6452725_3	-	-	-	-	0.00000000000000000006486	91.0
DYD3_k127_6461943_0	(ABC) transporter	K06147	-	-	3.283e-222	699.0
DYD3_k127_6465968_0	Angiotensin-converting enzyme	K01283	-	3.4.15.1	1.959e-225	713.0
DYD3_k127_6465968_1	Domain of unknown function DUF87	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104	576.0
DYD3_k127_6465968_2	Part of the tripartite ATP-independent periplasmic (TRAP) transport system	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003756	434.0
DYD3_k127_6465968_3	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides	K03118	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855	295.0
DYD3_k127_6465968_4	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality	K07560	GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360	-	0.000000000000000000000000000000000000000000000000000002063	194.0
DYD3_k127_6465968_5	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system	K03116	-	-	0.000000000008587	68.0
DYD3_k127_6465968_6	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation	K03117	-	-	0.00000003189	60.0
DYD3_k127_6474790_0	PFAM Lytic	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000004526	249.0
DYD3_k127_6474790_1	-	-	-	-	0.00000000000000000000000000000000000000000000006058	176.0
DYD3_k127_6474790_2	-	-	-	-	0.000000000000000000000000000000000000001857	149.0
DYD3_k127_6474790_3	-	-	-	-	0.00000000000000000000000000000000000001605	165.0
DYD3_k127_6474790_4	peptidase	-	-	-	0.000000000000104	82.0
DYD3_k127_6484502_0	NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein	K00341	-	1.6.5.3	3.868e-284	885.0
DYD3_k127_6484502_1	TIGRFAM NADH-quinone oxidoreductase, chain G	K00336	-	1.6.5.3	1.162e-236	757.0
DYD3_k127_6484502_2	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	K00333	-	1.6.5.3	3.027e-222	691.0
DYD3_k127_6484502_3	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain	K00335	-	1.6.5.3	4.436e-208	656.0
DYD3_k127_6484502_4	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone	K00337	-	1.6.5.3	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007093	481.0
DYD3_k127_6484502_5	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	K00338	-	1.6.5.3	0.00000000000000000000000000000000000000000000000000000000000000000000000001103	254.0
DYD3_k127_6484502_6	TIGRFAM NADH-quinone oxidoreductase, E subunit	K00334	-	1.6.5.3	0.00000000000000000000000000000000000000000000000000000000000000000000005189	243.0
DYD3_k127_6484502_7	Belongs to the complex I subunit 6 family	K00339	-	1.6.5.3	0.000000000000000000000000000000000000000000000000000000000005088	214.0
DYD3_k127_6484502_8	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient	K00340	-	1.6.5.3	0.000000000000000000000000000000000000000005514	156.0
DYD3_k127_6484502_9	NADH-quinone oxidoreductase, chain M	K00342	-	1.6.5.3	0.000000000000000000000000008014	113.0
DYD3_k127_6496748_0	Belongs to the RimK family	K05844	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009834	478.0
DYD3_k127_6496748_1	COG0471 Di- and tricarboxylate transporters	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006108	471.0
DYD3_k127_6496748_2	succinylglutamate desuccinylase aspartoacylase	K06987	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685	376.0
DYD3_k127_6496748_3	protein conserved in archaea	-	-	-	0.0000000000000000000000000000000000000000000000001228	188.0
DYD3_k127_6496748_4	Acts as a magnesium transporter	K06213	-	-	0.00000000000000000000000000000000000000000000001915	181.0
DYD3_k127_6496748_5	Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella	K18691	GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009279,GO:0016020,GO:0016740,GO:0016757,GO:0019867,GO:0030203,GO:0030312,GO:0030313,GO:0031975,GO:0043170,GO:0044462,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575	-	0.000000000000000000000000000000000000000128	156.0
DYD3_k127_6496748_6	Cupin 2, conserved barrel domain protein	-	-	-	0.000000000000000000000004279	111.0
DYD3_k127_6496748_7	Cupin 2, conserved barrel domain protein	-	-	-	0.000000000000000000000004279	111.0
DYD3_k127_6507492_0	TIGRFAM FeS assembly protein SufB	K09014	-	-	1.129e-275	852.0
DYD3_k127_6507492_1	fructose-bisphosphate aldolase	K01623	-	4.1.2.13	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074	417.0
DYD3_k127_6507492_10	ABC-type transport system involved in resistance to organic solvents auxiliary component	K07323	-	-	0.000000000000000000000000000000000000000001174	164.0
DYD3_k127_6507492_11	transcriptional regulator	-	-	-	0.0000000000000000000000000000000001913	137.0
DYD3_k127_6507492_12	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)	K01714	-	4.3.3.7	0.0000000000005073	72.0
DYD3_k127_6507492_13	STAS domain	K07122	-	-	0.000000001555	66.0
DYD3_k127_6507492_2	PFAM ABC transporter	K02065	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288	341.0
DYD3_k127_6507492_3	FeS assembly ATPase SufC	K09013	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006834	327.0
DYD3_k127_6507492_4	Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002457	313.0
DYD3_k127_6507492_5	ABC transporter permease	K02066	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000001303	267.0
DYD3_k127_6507492_6	Redoxin	K03564	-	1.11.1.15	0.00000000000000000000000000000000000000000000000000000000000000003553	226.0
DYD3_k127_6507492_7	PFAM VacJ family lipoprotein	K04754	-	-	0.0000000000000000000000000000000000000000000000000000000003101	211.0
DYD3_k127_6507492_8	PFAM Amino acid-binding ACT	K03567	-	-	0.000000000000000000000000000000000000000000000000000069	193.0
DYD3_k127_6507492_9	PFAM Mammalian cell entry related domain protein	K02067	-	-	0.00000000000000000000000000000000000000000009073	164.0
DYD3_k127_6516623_0	COG0577 ABC-type antimicrobial peptide transport system, permease component	K02004	-	-	4.863e-244	766.0
DYD3_k127_6516623_1	Barrel-sandwich domain of CusB or HlyD membrane-fusion	K02005	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016	578.0
DYD3_k127_6516623_2	ATPases associated with a variety of cellular activities	K02003,K05685	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528	309.0
DYD3_k127_6516623_3	Sigma-54 interaction domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000001587	236.0
DYD3_k127_6560019_0	Bacterial protein of unknown function (DUF885)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007056	580.0
DYD3_k127_6560019_1	COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009283	332.0
DYD3_k127_6560019_2	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	K06920	-	6.3.4.20	0.00000000000000000000000000000000000000000000000000000000000000001307	229.0
DYD3_k127_6560019_3	-	-	-	-	0.000000000000000001203	90.0
DYD3_k127_6560019_4	redox protein, regulator of disulfide bond formation	-	-	-	0.0000000000005972	70.0
DYD3_k127_6562720_0	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine	K00764	-	2.4.2.14	2.797e-220	694.0
DYD3_k127_6562720_1	serine threonine protein kinase	K11912,K12132	-	2.7.11.1	0.00000000000000000000000000000000000000000000000000000000000000007951	237.0
DYD3_k127_6562720_2	colicin V production	K03558	-	-	0.0000000000000000000000003095	111.0
DYD3_k127_6562720_3	Mur ligase middle domain	K11754	-	6.3.2.12,6.3.2.17	0.000000000000000000000428	104.0
DYD3_k127_6562720_4	protein conserved in bacteria	K03749	-	-	0.00000000001063	74.0
DYD3_k127_6581904_0	Belongs to the Orn Lys Arg decarboxylase class-II family	K01581	-	4.1.1.17	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001905	295.0
DYD3_k127_6581904_1	UPF0056 membrane protein	K05595	-	-	0.0000000000000000000000000000000000000000000000000000000000003464	217.0
DYD3_k127_6581904_2	redox protein regulator of disulfide bond formation	-	-	-	0.0000000000000000000000000000000000000000000000000000009841	199.0
DYD3_k127_6581904_3	tRNA-binding protein	K06878	-	-	0.00000000000000000000000000000000000000000001207	164.0
DYD3_k127_6581904_4	glyoxalase bleomycin resistance protein dioxygenase	K06996	-	-	0.00000000000000000000000000000000000001442	147.0
DYD3_k127_6581904_5	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate	K00761	-	2.4.2.9	0.0000000000000000000001066	100.0
DYD3_k127_6581904_6	-	-	-	-	0.0000003863	57.0
DYD3_k127_6586044_0	metal-dependent hydrolase with the TIM-barrel fold	-	-	-	1.832e-242	766.0
DYD3_k127_6586044_1	Belongs to the agmatine deiminase family	K10536	-	3.5.3.12	0.000000000000001395	78.0
DYD3_k127_6586044_2	HEAT repeats	-	-	-	0.000000004337	66.0
DYD3_k127_6586044_3	HEAT repeats	-	-	-	0.000002867	58.0
DYD3_k127_6586256_0	Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs	K06941	-	2.1.1.192	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081	436.0
DYD3_k127_6586256_1	Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate	K00940	-	2.7.4.6	0.000000000000000000000000000000000000000000000000000000000000000006998	228.0
DYD3_k127_6586256_2	iron-sulfur cluster assembly protein	K05997,K13628	GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0016530,GO:0019538,GO:0022607,GO:0031163,GO:0034986,GO:0043167,GO:0043169,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0071704,GO:0071840,GO:0097428,GO:0140104,GO:1901564	-	0.0000000000000000000000000000000000000009689	154.0
DYD3_k127_6586256_3	type IV pilus biogenesis stability protein PilW	K02656	-	-	0.00000000000000000000000000000000000002363	154.0
DYD3_k127_6586256_4	family transcriptional regulator	K15539	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0008360,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071944	-	0.00000000000000000001184	104.0
DYD3_k127_6586256_5	Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic 2Fe-2S and 4Fe-4S proteins	K22068	GO:0003674,GO:0003824,GO:0005198,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0010467,GO:0016740,GO:0016782,GO:0019538,GO:0019725,GO:0030003,GO:0031974,GO:0032947,GO:0036455,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0097428,GO:0098771,GO:1901564	-	0.00003223	51.0
DYD3_k127_6624260_0	Acetyl-coenzyme A synthetase N-terminus	K01907	-	6.2.1.16	6.522e-256	800.0
DYD3_k127_6624260_1	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate	K00864	GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615	2.7.1.30	8.17e-204	647.0
DYD3_k127_6624260_2	Thioesterase-like superfamily	K07107	-	-	0.000000000000000000000000000000000007164	142.0
DYD3_k127_6624260_3	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines	K05539	-	-	0.00000000005002	63.0
DYD3_k127_6645209_0	Membrane dipeptidase (Peptidase family M19)	K01273	-	3.4.13.19	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874	423.0
DYD3_k127_6645209_1	mandelate racemase muconate lactonizing	K01776,K02549,K19802	-	4.2.1.113,5.1.1.20,5.1.1.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412	327.0
DYD3_k127_6645209_2	Beta-lactamase	-	-	-	0.000000000000002318	80.0
DYD3_k127_6653628_0	Belongs to the Orn Lys Arg decarboxylase class-II family	K00928,K12526	-	2.7.2.4,4.1.1.20	8.64e-290	915.0
DYD3_k127_6653628_1	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit	K01663,K02500	GO:0000105,GO:0000107,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009382,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026	340.0
DYD3_k127_6653628_2	Belongs to the IlvD Edd family	K01687	-	4.2.1.9	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007824	327.0
DYD3_k127_6653628_3	Phosphoribosyl-AMP cyclohydrolase	K11755	GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0004636,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	3.5.4.19,3.6.1.31	0.00000000000000000000001331	103.0
DYD3_k127_6653628_4	1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase	K01814	GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	5.3.1.16	0.0000000000000000006473	88.0
DYD3_k127_6659480_0	COG1629 Outer membrane receptor proteins, mostly Fe transport	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238	402.0
DYD3_k127_6659480_1	LytTr DNA-binding domain	-	-	-	0.000000000000000000000001125	111.0
DYD3_k127_666328_0	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP	K09458	-	2.3.1.179	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204	571.0
DYD3_k127_666328_1	Anthranilate synthase component I	K01657,K01665	-	2.6.1.85,4.1.3.27	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336	466.0
DYD3_k127_666328_2	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis	K00059	-	1.1.1.100	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007402	310.0
DYD3_k127_666328_3	malonyl CoA-acyl carrier protein transacylase	K00645	GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576	2.3.1.39	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009529	311.0
DYD3_k127_666328_4	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation	K07082	GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006807,GO:0008150,GO:0008152,GO:0008932,GO:0008933,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0030203,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0042597,GO:0043170,GO:0044425,GO:0044459,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901564	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003176	307.0
DYD3_k127_666328_5	4-amino-4-deoxychorismate lyase	K02619	GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008696,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0019842,GO:0030170,GO:0034641,GO:0036094,GO:0042558,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0070279,GO:0071704,GO:0097159,GO:1901360,GO:1901363,GO:1901564	4.1.3.38	0.0000000000000000000000000000000000000000000000000000000002257	213.0
DYD3_k127_666328_6	Carrier of the growing fatty acid chain in fatty acid biosynthesis	K02078	GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0050896,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	-	0.00000000000000000000000000000006889	125.0
DYD3_k127_666328_7	Thymidylate kinase	K00943	GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.4.9	0.000000000000000001483	88.0
DYD3_k127_668132_0	COG0330 Membrane protease subunits, stomatin prohibitin homologs	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501	334.0
DYD3_k127_668132_1	-	-	-	-	0.0000000000002875	71.0
DYD3_k127_668132_2	Domain of unknown function (DUF4440)	-	-	-	0.000005463	53.0
DYD3_k127_6684843_0	Serine aminopeptidase, S33	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000001215	251.0
DYD3_k127_6684843_1	EVE domain-containing protein	-	-	-	0.00000000000000000000000000000000000000000000000000001429	192.0
DYD3_k127_6684843_2	Protein of unknown function DUF47	K07220	-	-	0.0000000000000000000000002173	108.0
DYD3_k127_6686771_0	Aldo keto reductases, related to diketogulonate reductase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000004251	272.0
DYD3_k127_6686771_1	-	K07221	-	-	0.0000000000000000000000000000000000000000000000000000000000000000004742	241.0
DYD3_k127_6686771_2	Dolichyl-phosphate-mannose-protein mannosyltransferase	-	-	-	0.000000000000001277	81.0
DYD3_k127_6686973_0	Pyridine nucleotide-disulphide oxidoreductase	K00384	-	1.8.1.9	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003548	423.0
DYD3_k127_6686973_1	Metallo-beta-lactamase superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000003087	231.0
DYD3_k127_6686973_2	(ABC) transporter	-	-	-	0.0000000000000000000000001391	111.0
DYD3_k127_6686973_3	Belongs to the arginase family	K01476	-	3.5.3.1	0.000000000000000000000001002	117.0
DYD3_k127_668845_0	Sigma-54 interaction domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865	561.0
DYD3_k127_668845_1	His Kinase A (phosphoacceptor) domain	-	-	-	0.000000000000000000004788	100.0
DYD3_k127_6695534_0	Efflux pump membrane transporter	K18299	-	-	0.0	1478.0
DYD3_k127_6695534_1	Glycine zipper 2TM domain	-	-	-	0.0000000000000000000000000000000000000000407	159.0
DYD3_k127_6695534_2	Belongs to the ompA family	K03286	-	-	0.00000000000000000000000000005184	117.0
DYD3_k127_6720439_0	MatE	-	GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006857,GO:0006862,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015215,GO:0015230,GO:0015605,GO:0015711,GO:0015748,GO:0015833,GO:0015931,GO:0015932,GO:0016020,GO:0022857,GO:0034220,GO:0035350,GO:0035442,GO:0035672,GO:0035673,GO:0042886,GO:0042887,GO:0042938,GO:0044464,GO:0044610,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071916,GO:0071944,GO:0098656,GO:1901264,GO:1901505,GO:1901679,GO:1904680	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007004	486.0
DYD3_k127_6720439_1	ABC transporter	K02013,K05776	-	3.6.3.34	0.00000000000000000000000000000002353	132.0
DYD3_k127_6720439_2	Dienelactone hydrolase family	K01061	-	3.1.1.45	0.000000000000000000000000001027	117.0
DYD3_k127_6726349_0	Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed	K00626	-	2.3.1.9	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004655	541.0
DYD3_k127_6726349_1	Sodium alanine symporter	K03310	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345	536.0
DYD3_k127_6726349_2	Catalyzes the ferrous insertion into protoporphyrin IX	K01772	-	4.99.1.1,4.99.1.9	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006501	422.0
DYD3_k127_6726349_3	Exodeoxyribonuclease IX	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000003775	274.0
DYD3_k127_6726349_4	MatE	K03327	-	-	0.0000000000000000000000000000000000000000000000000000000000001039	224.0
DYD3_k127_6726349_5	Peptidoglycan-binding domain 1 protein	-	-	-	0.000000000000000000000000000127	122.0
DYD3_k127_6726349_6	COG0258 5'-3' exonuclease (including N-terminal domain of PolI)	-	-	-	0.0000001262	57.0
DYD3_k127_6743841_0	Glutamate synthase	K00265	GO:0003674,GO:0003824,GO:0004355,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019676,GO:0019740,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045181,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	1.4.1.13,1.4.1.14	0.0	1030.0
DYD3_k127_6757269_0	PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein	K12136	-	-	2.229e-260	821.0
DYD3_k127_6757269_1	protein conserved in bacteria	-	-	-	0.0000000000000000000000000000000004921	136.0
DYD3_k127_6770280_0	PFAM PhoH family protein	K06217	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577	413.0
DYD3_k127_6770280_1	Transfers the fatty acyl group on membrane lipoproteins	K03820	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007546	354.0
DYD3_k127_6770280_2	PFAM CBS domain	K06189	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002708	282.0
DYD3_k127_6770280_3	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA	K07042	-	-	0.0000000000000000000000000000000000007483	144.0
DYD3_k127_6811660_0	Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane	K03980	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551	540.0
DYD3_k127_6811660_1	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control	K03979	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0007059,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022607,GO:0022611,GO:0022613,GO:0022618,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0043021,GO:0043023,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044087,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065003,GO:0065007,GO:0070925,GO:0071826,GO:0071840,GO:0090069,GO:0090071,GO:0097159,GO:0097367,GO:1901265,GO:1901363	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641	452.0
DYD3_k127_6811660_2	Binds directly to 16S ribosomal RNA	K02968	GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030234,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0042979,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0065003,GO:0065007,GO:0065009,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904	-	0.000000000000000000000009243	104.0
DYD3_k127_6826700_0	Nickel-dependent hydrogenase	K05922,K06281	-	1.12.5.1,1.12.99.6	3.401e-318	979.0
DYD3_k127_6826700_1	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway	K00351	-	1.6.5.8	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006611	590.0
DYD3_k127_6826700_10	UbiA prenyltransferase family	K02548	-	2.5.1.74	0.000000000000000000000000000000000000000000000000000000000000000002224	239.0
DYD3_k127_6826700_11	nitrate reductase activity	-	-	-	0.000000000000000000000000000000000000000000000000000000000001896	220.0
DYD3_k127_6826700_12	CBS domain	-	-	-	0.000000000000000000000000000000000000001378	151.0
DYD3_k127_6826700_13	SnoaL-like domain	-	-	-	0.0000000000000000000009851	102.0
DYD3_k127_6826700_14	NapC/NirT cytochrome c family, N-terminal region	K02569	-	-	0.00000000000122	69.0
DYD3_k127_6826700_15	protein conserved in bacteria	K05952	-	-	0.0000003456	54.0
DYD3_k127_6826700_2	NiFe/NiFeSe hydrogenase small subunit C-terminal	K06282	-	1.12.99.6	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002557	542.0
DYD3_k127_6826700_3	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol	K00347,K03614	-	1.6.5.8	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207	553.0
DYD3_k127_6826700_4	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol	K00346	GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008137,GO:0008150,GO:0008152,GO:0015672,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030001,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0051179,GO:0051234,GO:0055114,GO:0098796,GO:1902494	1.6.5.8	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005632	527.0
DYD3_k127_6826700_5	4Fe-4S dicluster domain	K21834	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501	458.0
DYD3_k127_6826700_6	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol	K00350	-	1.6.5.8	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000059	325.0
DYD3_k127_6826700_7	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol	K00349	-	1.6.5.8	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676	321.0
DYD3_k127_6826700_8	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193	311.0
DYD3_k127_6826700_9	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol	K00348	-	1.6.5.8	0.000000000000000000000000000000000000000000000000000000000000000000000000000184	266.0
DYD3_k127_68546_0	long-chain fatty acid transport protein	-	-	-	1.975e-276	887.0
DYD3_k127_6893098_0	TIGRFAM penicillin-binding protein, 1A	K05366	-	2.4.1.129,3.4.16.4	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588	385.0
DYD3_k127_6893098_1	mRNA catabolic process	-	-	-	0.0000000000000000000000000000000000000007428	155.0
DYD3_k127_6893650_0	COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase	K01082	GO:0000103,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006790,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008252,GO:0008441,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872	3.1.3.7	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002319	313.0
DYD3_k127_6893650_1	hydrolase	K20881	-	3.1.3.5	0.00000000000000000000000000000000000000000000000000001964	208.0
DYD3_k127_6893650_2	DEAD-box RNA helicase involved in	K03732	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019439,GO:0019904,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0070035,GO:0071704,GO:0090304,GO:0097718,GO:0140098,GO:1901360,GO:1901361,GO:1901575	3.6.4.13	0.0000000003452	63.0
DYD3_k127_6903769_0	Amidase	K01426	-	3.5.1.4	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872	528.0
DYD3_k127_6903769_1	-	-	-	-	0.00000000000000000000000000000000000000000000000000000000000005144	220.0
DYD3_k127_6903769_2	Methyltransferase	-	-	-	0.00000000000000000000000004665	109.0
DYD3_k127_6904943_0	-	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000006849	273.0
DYD3_k127_6904943_1	phosphodiesterase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000176	256.0
DYD3_k127_6904943_2	PFAM blue (type 1) copper domain protein	-	-	-	0.0000000000000000000000000000000000001369	151.0
DYD3_k127_6904943_3	COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL homologs	K07303	-	1.3.99.16	0.0000000004657	60.0
DYD3_k127_6915526_0	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate	K00366,K00381,K00392	GO:0003674,GO:0003824,GO:0004783,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006790,GO:0008150,GO:0008152,GO:0009337,GO:0009987,GO:0016002,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016673,GO:0019419,GO:0020037,GO:0032991,GO:0044237,GO:0044424,GO:0044464,GO:0046906,GO:0048037,GO:0050311,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0097159,GO:1901363	1.7.7.1,1.8.1.2,1.8.7.1	5.37e-216	683.0
DYD3_k127_6915526_1	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component	K00380	GO:0000166,GO:0003674,GO:0003824,GO:0004783,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006790,GO:0008150,GO:0008152,GO:0009337,GO:0009987,GO:0010181,GO:0016491,GO:0016645,GO:0016646,GO:0016651,GO:0016667,GO:0016668,GO:0032553,GO:0032991,GO:0036094,GO:0042602,GO:0043167,GO:0043168,GO:0044237,GO:0044424,GO:0044464,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0055114,GO:0070401,GO:0097159,GO:0097367,GO:1901265,GO:1901363	1.8.1.2	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216	496.0
DYD3_k127_6915526_2	Belongs to the PAPS reductase family. CysH subfamily	K00390	GO:0000103,GO:0003674,GO:0003824,GO:0004604,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016667,GO:0016671,GO:0019379,GO:0019419,GO:0044237,GO:0044424,GO:0044464,GO:0055114	1.8.4.10,1.8.4.8	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002667	306.0
DYD3_k127_6915526_3	in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon	K13634	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003458	310.0
DYD3_k127_6915526_4	Bacterial protein of unknown function (Gcw_chp)	-	-	-	0.0000000000000000000009324	97.0
DYD3_k127_6931812_0	Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs	K08300	-	3.1.26.12	3.386e-211	686.0
DYD3_k127_6931812_1	Responsible for synthesis of pseudouridine from uracil	K06179	GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360	5.4.99.24	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013	320.0
DYD3_k127_6941433_0	Outer membrane receptor	K02014	-	-	5.021e-297	942.0
DYD3_k127_6941433_1	transcriptional regulator	K02624	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527	338.0
DYD3_k127_6941433_2	citrate synthase	K01647	-	2.3.3.1	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006123	300.0
DYD3_k127_6941433_3	Glyoxalase-like domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004716	282.0
DYD3_k127_6941433_4	R COG0655 Multimeric flavodoxin WrbA	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000188	252.0
DYD3_k127_6941433_5	alpha/beta hydrolase fold	-	-	-	0.00000000000000000000000000000000000000000000000005514	188.0
DYD3_k127_6941433_6	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)	-	-	-	0.0000000000000000000000001508	111.0
DYD3_k127_6941433_7	Sulfatase-modifying factor enzyme 1	K11912	-	2.7.11.1	0.0003166	44.0
DYD3_k127_6962297_0	Methyltransferase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000968	287.0
DYD3_k127_6962297_1	Glutathione S-transferase, N-terminal domain	K01800,K01801	-	5.2.1.2,5.2.1.4	0.0000000000000000000000000000000000000000000000000000000000000000004442	235.0
DYD3_k127_6989861_0	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system	K02017	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	3.6.3.29	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004955	313.0
DYD3_k127_6989861_1	belongs to the sigma-70 factor family, ECF subfamily	K03088	GO:0001101,GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009410,GO:0009415,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042221,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1901700,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141	-	0.000000000000005132	82.0
DYD3_k127_6989861_2	ABC-type molybdate transport system, permease component	K02018	-	-	0.0004827	43.0
DYD3_k127_7005514_0	COG0574 Phosphoenolpyruvate synthase pyruvate phosphate dikinase	K01007,K21787	GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016999,GO:0017000,GO:0017144,GO:0044237,GO:0044249	2.7.9.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007246	479.0
DYD3_k127_7005514_1	NAD dependent epimerase/dehydratase family	K05281	-	1.3.1.45	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003444	294.0
DYD3_k127_7005514_2	Belongs to the CDS family	K00981,K19664	GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	2.7.7.41,2.7.7.67	0.0000000000000000000000000000000000000000000000000000000000004102	216.0
DYD3_k127_7005514_3	unsaturated fatty acid biosynthetic process	K10255	-	1.14.19.23,1.14.19.45	0.0000000000000000000000000000000000000000009315	169.0
DYD3_k127_7005753_0	Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties	K00688	-	2.4.1.1	3.502e-297	927.0
DYD3_k127_7005753_1	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position	K00700	-	2.4.1.18	5.118e-293	917.0
DYD3_k127_7005753_2	Synthesizes alpha-1,4-glucan chains using ADP-glucose	K00703	-	2.4.1.21	0.00000000000000000000000000000000000000000000000002785	185.0
DYD3_k127_7006702_0	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate	K00147	GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114	1.2.1.41	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004	508.0
DYD3_k127_7006702_1	C-terminal domain of alpha-glycerophosphate oxidase	K00111	-	1.1.5.3	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261	499.0
DYD3_k127_7006702_2	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate	K00931	-	2.7.2.11	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651	415.0
DYD3_k127_7006702_3	TIGRFAM Acetolactate synthase, small subunit	K01653	-	2.2.1.6	0.000000000000000000000000000000000647	136.0
DYD3_k127_7009134_0	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates	K00989	-	2.7.7.56	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753	354.0
DYD3_k127_7009134_1	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions	K02428	GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035870,GO:0036220,GO:0036222,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0046983,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576	3.6.1.66	0.000000000000000000000000000000000000000000000000000000000004299	214.0
DYD3_k127_7009134_2	Involved in the biosynthesis of porphyrin-containing compound	-	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	-	0.00000000000000000000000000000001558	130.0
DYD3_k127_7015758_0	PFAM pyruvate ferredoxin flavodoxin oxidoreductase	K04090	-	1.2.7.8	2.612e-220	697.0
DYD3_k127_7015758_1	Metallo-beta-lactamase superfamily	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005364	351.0
DYD3_k127_7022406_0	Hydroxymethylglutaryl-coenzyme A reductase	K00021,K00054,K00626,K00869,K01641	-	1.1.1.34,1.1.1.88,2.3.1.9,2.3.3.10,2.7.1.36	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532	305.0
DYD3_k127_7022406_1	GHMP kinases N terminal domain	K01597	-	4.1.1.33	0.00000000000000000000000000000000000000000000000003298	184.0
DYD3_k127_7022406_2	GHMP kinases N terminal domain	K00938	-	2.7.4.2	0.000000000000000000000000000000000000000000349	172.0
DYD3_k127_7028398_0	Biotin-lipoyl like	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902	449.0
DYD3_k127_7028398_1	TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family	K18139	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007218	409.0
DYD3_k127_7028398_2	Sodium/calcium exchanger protein	K07300	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007408	302.0
DYD3_k127_7028398_3	VIT family	-	-	-	0.00000000000000000000000000000000000000000000000000000000001906	213.0
DYD3_k127_7028398_4	Protein of unknown function (DUF3302)	-	-	-	0.00000000000000000000000000000000000000000005643	166.0
DYD3_k127_7028398_5	Belongs to the CDP-alcohol phosphatidyltransferase class-I family	K17103	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	2.7.8.8	0.000000000000000000000000005539	116.0
DYD3_k127_7028925_0	Belongs to the CarB family	K01955	-	6.3.5.5	0.0	1603.0
DYD3_k127_7028925_1	Heat shock 70 kDa protein	K04043	-	-	2.12e-317	982.0
DYD3_k127_7028925_2	Belongs to the CarA family	K01956	-	6.3.5.5	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008918	549.0
DYD3_k127_7028925_3	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	K03686	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006853	500.0
DYD3_k127_7028925_4	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons	K03705	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006903	374.0
DYD3_k127_7028925_5	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides	K03624	-	-	0.00000000000000000000000000000000000000000000000000000000000000000002871	235.0
DYD3_k127_7028925_6	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit	K02427	-	2.1.1.166	0.0000000000000000000000000000000000000000000000000000000000000000002589	237.0
DYD3_k127_7028925_7	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate	K00215	-	1.17.1.8	0.00000000000000000000000000000000000000000000000000000000006199	214.0
DYD3_k127_7028925_8	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ	K03687	-	-	0.0000000000000000000000000000000000000000000000287	177.0
DYD3_k127_7028925_9	RNA-binding protein	K07574	-	-	0.0000000000000000000004056	100.0
DYD3_k127_7037451_0	PFAM ABC transporter transmembrane region	K06021,K13409,K20344	-	3.6.3.27	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513	527.0
DYD3_k127_7037451_1	HlyD family secretion protein	K13408	-	-	0.00000000000000000000000000000000000000000000009421	186.0
DYD3_k127_7046085_0	RimK-like ATP-grasp domain	K03802	-	6.3.2.29,6.3.2.30	0.0	1188.0
DYD3_k127_7046085_1	Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation	K01305	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008270,GO:0008798,GO:0016787,GO:0019538,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008358	486.0
DYD3_k127_7046085_2	Belongs to the peptidase S51 family	K13282	-	3.4.15.6	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796	338.0
DYD3_k127_7046085_3	Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate	K01497	GO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576	3.5.4.25	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046	334.0
DYD3_k127_7046085_4	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)	K06879	-	1.7.1.13	0.0000000000000000000000000000000000000000000000000000000000000000000000000005517	265.0
DYD3_k127_7049555_0	Zinc carboxypeptidase	-	-	-	4.026e-232	754.0
DYD3_k127_7049555_1	Reversible hydration of carbon dioxide	K01673	-	4.2.1.1	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962	293.0
DYD3_k127_7069917_0	Glycerophosphoryl diester phosphodiesterase family	K01126	GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008081,GO:0008889,GO:0009279,GO:0016020,GO:0016787,GO:0016788,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0042578,GO:0042597,GO:0043167,GO:0043169,GO:0044462,GO:0044464,GO:0046872,GO:0071944	3.1.4.46	0.00000000000000000000000000000000000000000000000000005715	191.0
DYD3_k127_7069917_1	-	-	-	-	0.0000000000000000000000000000000000000000000756	170.0
DYD3_k127_7069917_2	Di-haem cytochrome c peroxidase	K00428	-	1.11.1.5	0.000000000000000000000000000000000003207	141.0
DYD3_k127_7071595_0	Belongs to the glutamine synthetase family	K01915	-	6.3.1.2	5.442e-222	695.0
DYD3_k127_7071595_1	Pyridine nucleotide-disulphide oxidoreductase	K03885	-	1.6.99.3	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582	539.0
DYD3_k127_7071595_2	Calcineurin-like phosphoesterase superfamily domain	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000456	246.0
DYD3_k127_7071595_3	PFAM Cytochrome C	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000006419	234.0
DYD3_k127_7071595_4	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	-	-	-	0.000000000000000000000000000000000000000000000219	171.0
DYD3_k127_7071595_5	chromate transporter	K07240	-	-	0.000000000000000000000000000000000000000000001745	168.0
DYD3_k127_7071595_6	Protein of unknown function (DUF4199)	-	-	-	0.0000000000000000000000000000000000000005371	156.0
DYD3_k127_7071595_7	PFAM regulatory protein LuxR	-	-	-	0.00000000000000000000000000001964	122.0
DYD3_k127_7071595_8	L-lactate permease	K03303	-	-	0.0000000000000000000009856	98.0
DYD3_k127_7071595_9	methyltransferase	-	-	-	0.00000003936	61.0
DYD3_k127_7073683_0	Berberine and berberine like	-	-	-	2.12e-260	808.0
DYD3_k127_7073683_1	HxlR-like helix-turn-helix	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008387	404.0
DYD3_k127_7073683_2	ABC transporter	K02003	-	-	0.0000000000000000000000000000000000000000000000000000000000000001326	229.0
DYD3_k127_7078124_0	signal transduction histidine kinase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001925	595.0
DYD3_k127_7078124_1	response regulator receiver	K13599	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002739	462.0
DYD3_k127_7078124_10	Domain of unknown function (DUF4390)	-	-	-	0.0000001775	60.0
DYD3_k127_7078124_2	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA	K03500	-	2.1.1.176	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007947	400.0
DYD3_k127_7078124_3	Glutathione-dependent formaldehyde-activating	-	-	-	0.0000000000000000000000000000000000000000000000000000002551	199.0
DYD3_k127_7078124_4	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	0.0000000000000000000000000000000000000000000005925	169.0
DYD3_k127_7078124_5	-	-	-	-	0.00000000000000000000000000000000000000000001454	166.0
DYD3_k127_7078124_6	Protein of unknown function (DUF1304)	K08987	-	-	0.00000000000000000000000000000000000002714	151.0
DYD3_k127_7078124_7	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus	K00604	-	2.1.2.9	0.0000000000000000000000000000001725	128.0
DYD3_k127_7078124_8	Protein of unknown function (DUF2938)	-	-	-	0.0000000000000001177	80.0
DYD3_k127_7078124_9	Antibiotic biosynthesis monooxygenase	-	-	-	0.000000000000008995	83.0
DYD3_k127_710014_0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA	K03582	-	3.1.11.5	0.00000000000000000000000000000000000000000000000000000000000004729	227.0
DYD3_k127_710014_1	Type II secretion system (T2SS), protein K	K02460	-	-	0.0000000000000000000000000000000000000000000000000000000002379	216.0
DYD3_k127_710014_2	Type II secretion system (T2SS), protein J	-	-	-	0.000000000000000000000000000000000211	139.0
DYD3_k127_710014_3	GspL periplasmic domain	-	-	-	0.00000000000000000000000000000005213	141.0
DYD3_k127_710014_4	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins	K02462	-	-	0.000000000001389	76.0
DYD3_k127_710014_5	Type II secretion system, protein N	K02463	GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705	-	0.000000000001649	76.0
DYD3_k127_7100864_0	ATPase, P-type (transporting), HAD superfamily, subfamily IC	K17686	-	3.6.3.54	1.345e-300	940.0
DYD3_k127_7100864_1	Copper-binding protein	-	-	-	1.068e-215	685.0
DYD3_k127_7100864_2	Belongs to the UPF0176 family	K07146	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000002084	257.0
DYD3_k127_7100864_3	Copper resistance protein B precursor (CopB)	K07233	-	-	0.000000000000000000000000000000000000000000000000000000000000000006091	236.0
DYD3_k127_7100864_4	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family	-	-	-	0.00000000000000000000000000292	117.0
DYD3_k127_7100864_5	Protein of unknown function (DUF465)	-	-	-	0.00000000000155	69.0
DYD3_k127_7134516_0	Belongs to the citrate synthase family	K01659	-	2.3.3.5	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168	512.0
DYD3_k127_7134516_1	COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes	K06132	GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0030572,GO:0032048,GO:0032049,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0090483,GO:1901576	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626	501.0
DYD3_k127_7134516_2	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate	K03417	-	4.1.3.30	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005569	412.0
DYD3_k127_7134516_3	MmgE/PrpD family	K01720	-	4.2.1.79	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268	395.0
DYD3_k127_7134516_4	alcohol dehydrogenase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318	398.0
DYD3_k127_7134516_5	Metallo-beta-lactamase superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275	357.0
DYD3_k127_7134516_6	Cytochrome C oxidase, cbb3-type, subunit III	-	-	-	0.00000000000000000000000000000000000001143	152.0
DYD3_k127_7134516_7	Bacterial protein of unknown function (DUF945)	-	-	-	0.0000000002525	73.0
DYD3_k127_7147674_0	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane	K00325	-	1.6.1.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018	603.0
DYD3_k127_7147674_1	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane	K00324	-	1.6.1.2	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864	447.0
DYD3_k127_7147674_2	PFAM HNH endonuclease	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002725	281.0
DYD3_k127_7147674_3	NADP transhydrogenase	K00324	-	1.6.1.2	0.000000000000000000000000000000000000000000002373	166.0
DYD3_k127_714780_0	Binding-protein-dependent transport system inner membrane component	K02033,K15581	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252	362.0
DYD3_k127_714780_1	Belongs to the ABC transporter superfamily	K10823,K13896,K15583	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593	352.0
DYD3_k127_714780_2	COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components	K15582	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921	316.0
DYD3_k127_714780_3	Bacterial extracellular solute-binding proteins, family 5 Middle	-	-	-	0.000000000000000000000002466	104.0
DYD3_k127_7194480_0	Activator of Hsp90 ATPase homolog 1-like protein	-	-	-	0.0000000000000000000000000000000000000000000000000006862	184.0
DYD3_k127_7194480_1	-	-	-	-	0.000000000000000000000000000000000004376	146.0
DYD3_k127_7194480_2	Peptidase, M16	K07263	-	-	0.0000000000000002071	81.0
DYD3_k127_7201229_0	Phosphotransferase enzyme family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000004179	231.0
DYD3_k127_7201229_1	Protein of unknown function (DUF1232)	-	-	-	0.0000000000000000000000000000000000000000002721	164.0
DYD3_k127_7201229_2	Putative DNA-binding domain	-	-	-	0.000000000000000000000005158	115.0
DYD3_k127_721580_0	Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily	K00239	-	1.3.5.1,1.3.5.4	3.89e-311	964.0
DYD3_k127_721580_1	Belongs to the class-II aminoacyl-tRNA synthetase family	K04567	-	6.1.1.6	1.632e-217	684.0
DYD3_k127_721580_10	Sigma E regulatory protein, MucB RseB	K03598	-	-	0.00000000001282	70.0
DYD3_k127_721580_11	Protein of unknown function (DUF1674)	-	-	-	0.000000008401	60.0
DYD3_k127_721580_12	Anti sigma-E protein RseA, N-terminal domain	-	-	-	0.000126	52.0
DYD3_k127_721580_2	COG0608 Single-stranded DNA-specific exonuclease	K07462	GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008297,GO:0008409,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0035312,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0045145,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938	551.0
DYD3_k127_721580_3	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA	K02836	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007544	518.0
DYD3_k127_721580_4	TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein	K00240	-	1.3.5.1,1.3.5.4	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006352	442.0
DYD3_k127_721580_5	Belongs to the sigma-70 factor family. ECF subfamily	K03088	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000006571	257.0
DYD3_k127_721580_6	COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit	K00241	-	-	0.000000000000000000000000000000118	128.0
DYD3_k127_721580_7	Folate-binding protein involved in regulating the level of ATP-DnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication	K06980	GO:0003674,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0019842,GO:0022607,GO:0031163,GO:0031406,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0071840,GO:0072341,GO:0097159,GO:1901363	-	0.0000000000000000000000000000005878	134.0
DYD3_k127_721580_8	succinate dehydrogenase	K00242	-	-	0.0000000000000000000000000009476	119.0
DYD3_k127_721580_9	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH	K00240,K09159	GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016043,GO:0016999,GO:0017013,GO:0017144,GO:0018065,GO:0018293,GO:0019538,GO:0019752,GO:0022607,GO:0034552,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0045333,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072350,GO:1901564	1.3.5.1,1.3.5.4	0.00000000000002776	77.0
DYD3_k127_7228235_0	Major Facilitator Superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005474	541.0
DYD3_k127_7228235_1	Belongs to the purine pyrimidine phosphoribosyltransferase family	K00760	-	2.4.2.8	0.000000000000000000000000000000000000000000000000000000805	198.0
DYD3_k127_7228235_2	COG1230 Co Zn Cd efflux system component	K16264	-	-	0.000001265	51.0
DYD3_k127_724330_0	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes	K03089	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996	375.0
DYD3_k127_724330_1	TIGRFAM Cell division ATP-binding protein FtsE	K09812	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004457	281.0
DYD3_k127_724330_2	Part of the ABC transporter FtsEX involved in cellular division	K09811	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0009274,GO:0009276,GO:0009987,GO:0016020,GO:0016021,GO:0030312,GO:0030313,GO:0031224,GO:0031975,GO:0032153,GO:0044425,GO:0044464,GO:0051301,GO:0071944	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000002264	276.0
DYD3_k127_724330_3	Belongs to the ompA family	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000003361	247.0
DYD3_k127_724330_4	Protein of unknown function (DUF3465)	-	-	-	0.0000000000000000000000000000000009555	133.0
DYD3_k127_74504_0	gluconolactonase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796	336.0
DYD3_k127_74504_1	GTP cyclohydrolase	K01495	GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617	3.5.4.16	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565	318.0
DYD3_k127_74504_2	Belongs to the FPG family	K10563	-	3.2.2.23,4.2.99.18	0.000000000000000000000000000000000000000000000000000000000000000000000007235	246.0
DYD3_k127_746210_0	PFAM Dienelactone hydrolase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003872	283.0
DYD3_k127_746210_1	-	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000002224	238.0
DYD3_k127_746210_2	COGs COG0790 FOG TPR repeat SEL1 subfamily	-	-	-	0.00000000000000000000000000000000000000000000000000001793	201.0
DYD3_k127_746210_3	Protein-S-isoprenylcysteine methyltransferase	-	-	-	0.0000000000000000000000000000000000000202	149.0
DYD3_k127_746210_4	Redoxin	K03564	-	1.11.1.15	0.0000000000000000000000000000001667	130.0
DYD3_k127_746210_5	Histidine phosphatase superfamily (branch 1)	-	-	-	0.00000000000000000000000003409	115.0
DYD3_k127_746210_6	Tetratricopeptide repeat	-	-	-	0.000000000000000000000003589	104.0
DYD3_k127_75919_0	2-hydroxychromene-2-carboxylate isomerase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008643	295.0
DYD3_k127_75919_1	thiolester hydrolase activity	K06889,K07000	-	-	0.0000000000000000000000000000000000000000000003631	173.0
DYD3_k127_768251_0	Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	K00163	-	1.2.4.1	2.897e-219	689.0
DYD3_k127_768251_1	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)	K00627	-	2.3.1.12	0.00000000000000000000000000000000000000000000000000000000000002627	222.0
DYD3_k127_769035_0	Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force	K15987	-	3.6.1.1	1.565e-219	691.0
DYD3_k127_769035_1	Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions	K21071	-	2.7.1.11,2.7.1.90	3.768e-203	640.0
DYD3_k127_769035_2	Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate	K02558	-	6.3.2.45	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001848	537.0
DYD3_k127_769035_3	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides	K03684	-	3.1.13.5	0.000000000000000000000000000000000000000000000000000000000000000000000005437	256.0
DYD3_k127_769035_4	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism	K00939	-	2.7.4.3	0.00000000000000000000000000000000000000000000000000000000000000000000009311	246.0
DYD3_k127_769035_5	PFAM aminotransferase class-III	K01845	-	5.4.3.8	0.000000000000000000000000000000000000000000000000000004242	194.0
DYD3_k127_769035_6	ATP-dependent protease La (LON) substrate-binding domain	K07157	-	-	0.00000000000000000000000000000000000000000000000000003253	196.0
DYD3_k127_769035_7	Catalyzes the reversible phosphorylation of UMP to UDP	K09903	-	2.7.4.22	0.000003752	49.0
DYD3_k127_769035_8	-	-	-	-	0.0003573	49.0
DYD3_k127_769447_0	DNA polymerase III alpha subunit	K02337	-	2.7.7.7	0.0	1312.0
DYD3_k127_769447_1	Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA	K01962	-	2.1.3.15,6.4.1.2	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143	458.0
DYD3_k127_769447_2	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine	K04075	-	6.3.4.19	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756	316.0
DYD3_k127_769447_3	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	K03470	-	3.1.26.4	0.0000000000000000000000000000000000000000000000000000000000001246	225.0
DYD3_k127_769447_4	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	K00748	GO:0003674,GO:0003824,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008194,GO:0008289,GO:0008610,GO:0008654,GO:0008915,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019637,GO:0019897,GO:0019898,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509	2.4.1.182	0.000000000000000000000000009484	114.0
DYD3_k127_780535_0	2-oxoglutarate dehydrogenase complex	K00382	-	1.8.1.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006971	580.0
DYD3_k127_780535_1	The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2)	K00658	-	2.3.1.61	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002152	377.0
DYD3_k127_780535_2	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance	K00951	GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009259,GO:0009605,GO:0009987,GO:0009991,GO:0015949,GO:0015969,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0019637,GO:0019693,GO:0030312,GO:0031667,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042278,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046128,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:1901068,GO:1901135,GO:1901360,GO:1901564,GO:1901657	2.7.6.5	0.000000000000000000000000000002257	123.0
DYD3_k127_787222_0	homoserine kinase activity	K02204	-	2.7.1.39	0.0	1328.0
DYD3_k127_787222_1	PFAM RNA polymerase sigma factor 54, interaction	-	-	-	2.883e-232	735.0
DYD3_k127_787222_10	COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K00375,K05825	-	-	0.00000000000000000000000000000000000000000000000000000000000002474	226.0
DYD3_k127_787222_11	oxidoreductase	-	-	-	0.000000000000000000000000000000000000000000004416	182.0
DYD3_k127_787222_12	mannose-1-phosphate guanylyltransferase activity	K00971,K16011	-	2.7.7.13,5.3.1.8	0.00000000000000000000000000000000000000001349	166.0
DYD3_k127_787222_13	DoxX	K15977	-	-	0.0000000000000000000000000000000001252	138.0
DYD3_k127_787222_14	Putative DNA-binding domain	-	-	-	0.000000000000000000000000000005926	128.0
DYD3_k127_787222_15	Predicted integral membrane protein (DUF2282)	-	-	-	0.000000000000000000002013	96.0
DYD3_k127_787222_16	Predicted integral membrane protein (DUF2282)	-	-	-	0.00000000000000000002201	93.0
DYD3_k127_787222_17	HNH endonuclease	-	-	-	0.000000000000000002453	87.0
DYD3_k127_787222_18	-	-	-	-	0.000000000000003805	79.0
DYD3_k127_787222_19	-	-	-	-	0.0000000000000313	77.0
DYD3_k127_787222_2	Glycogen debranching enzyme	-	-	-	2.812e-205	663.0
DYD3_k127_787222_20	Major facilitator Superfamily	-	-	-	0.00000004912	64.0
DYD3_k127_787222_21	Phage integrase, N-terminal	-	-	-	0.0000001356	58.0
DYD3_k127_787222_22	Carboxypeptidase regulatory-like domain	-	-	-	0.0000003625	52.0
DYD3_k127_787222_23	HNH endonuclease	-	-	-	0.0001643	45.0
DYD3_k127_787222_24	-	-	-	-	0.0005888	46.0
DYD3_k127_787222_3	gluconolactonase activity	K01053	-	3.1.1.17	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814	578.0
DYD3_k127_787222_4	oxidoreductase activity, acting on CH-OH group of donors	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795	414.0
DYD3_k127_787222_5	Pyridine nucleotide-disulphide oxidoreductase	K03885	-	1.6.99.3	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773	418.0
DYD3_k127_787222_6	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084	386.0
DYD3_k127_787222_7	belongs to the UPF0276 family	K09930	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106	316.0
DYD3_k127_787222_8	Belongs to the MIP aquaporin (TC 1.A.8) family	K06188	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000001902	281.0
DYD3_k127_787222_9	Cupin 2, conserved barrel domain protein	K11477	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000209	263.0
DYD3_k127_791762_0	Class II aldolase	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003584	280.0
DYD3_k127_791762_1	-	-	-	-	0.00000000000000000000000000000000000000001439	162.0
DYD3_k127_791762_2	-	-	-	-	0.000000000000000000000000000000000000001954	154.0
DYD3_k127_791762_3	Protein of unknown function (DUF1761)	-	-	-	0.0000002869	55.0
DYD3_k127_795900_0	Belongs to the acetylglutamate kinase family. ArgB subfamily	K00930	GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.7.2.8	0.000000000000000000000000000000000000000000000000000000000000000000000001228	258.0
DYD3_k127_795900_1	Belongs to the ATCase OTCase family	K09065,K13043	GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	2.1.3.11,2.1.3.9	0.000000000000000000000000000000000000000000000000000000000000000000000002166	256.0
DYD3_k127_795900_2	Lyase	K01755	GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607	4.3.2.1	0.000000000000000000000000000000000000000000000000000000000001255	221.0
DYD3_k127_795900_3	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family	K00821	-	2.6.1.11,2.6.1.17	0.000000000000000000000000000008293	123.0
DYD3_k127_816966_0	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance	K00951	-	2.7.6.5	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000375	599.0
DYD3_k127_816966_1	transcriptional regulatory protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122	345.0
DYD3_k127_816966_2	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	K01159	-	3.1.22.4	0.00000004526	54.0
DYD3_k127_819423_0	TonB-dependent receptor plug	-	-	-	3.056e-204	660.0
DYD3_k127_819423_1	Protein of unknown function (DUF819)	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000002458	272.0
DYD3_k127_848913_0	Formamidopyrimidine-DNA glycosylase H2TH domain	K10563	-	3.2.2.23,4.2.99.18	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233	379.0
DYD3_k127_848913_1	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine	K07304	-	1.8.4.11	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009807	313.0
DYD3_k127_848913_2	Peptidase family M23	-	-	-	0.000000000000000000000000000000000000000000000000005814	193.0
DYD3_k127_862940_0	Bacterial protein of unknown function (DUF885)	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004736	591.0
DYD3_k127_862940_1	Strictosidine synthase	-	-	-	0.0000000000000821	74.0
DYD3_k127_862940_2	PFAM Peptidase family M49	-	-	-	0.000003476	48.0
DYD3_k127_911060_0	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	K06168	-	2.8.4.3	6.263e-207	653.0
DYD3_k127_911060_1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate	K03701	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003152	315.0
DYD3_k127_911060_2	COG0477 Permeases of the major facilitator superfamily	-	GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000208	301.0
DYD3_k127_911060_3	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	K03111	-	-	0.0000000000000000000000000000000000000000000000000000000001218	207.0
DYD3_k127_912047_0	HemY domain protein	K02498	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000002662	284.0
DYD3_k127_912047_1	enzyme of heme biosynthesis	K02496,K13543	-	2.1.1.107,4.2.1.75	0.0000000000000000000000000000000003293	146.0
DYD3_k127_912047_2	Uroporphyrinogen III synthase	K01719	-	4.2.1.75	0.00000000000000000000000000003389	125.0
DYD3_k127_933802_0	COG4631 Xanthine dehydrogenase, molybdopterin-binding subunit B	K13482	-	1.17.1.4	8.839e-223	705.0
DYD3_k127_933802_1	Xanthine dehydrogenase small subunit	K13481	-	1.17.1.4	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008952	501.0
DYD3_k127_934431_0	KR domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112	417.0
DYD3_k127_934431_1	SnoaL-like domain	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004577	402.0
DYD3_k127_934431_2	Double sensory domain of two-component sensor kinase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467	351.0
DYD3_k127_934431_3	-	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004	316.0
DYD3_k127_934431_4	Alpha beta hydrolase	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000009815	240.0
DYD3_k127_939465_0	acyl-CoA dehydrogenase	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005094	430.0
DYD3_k127_939465_1	COG0457 FOG TPR repeat	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000008525	275.0
DYD3_k127_939465_2	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	K03832	-	-	0.00000000000000000000000000000000000000000000001442	177.0
DYD3_k127_939465_3	2Fe-2S iron-sulfur cluster binding domain	K04755	-	-	0.0000000000000000000000000000000000000009521	150.0
DYD3_k127_939465_4	Protein conserved in bacteria	-	-	-	0.000000000000000000001333	99.0
DYD3_k127_948939_0	PFAM sigma-54 factor interaction domain-containing protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708	416.0
DYD3_k127_948939_1	long-chain fatty acid transport protein	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003019	321.0
DYD3_k127_948939_2	TIGRFAM conserved repeat domain	-	-	-	0.00000000000000000000000000000000000000000000000000000000000007589	230.0
DYD3_k127_948939_3	TIGRFAM conserved repeat domain	-	-	-	0.000000000000000000000000000000000000000000000001347	188.0
DYD3_k127_948939_4	TIGRFAM conserved repeat domain	-	-	-	0.00000000000000000002652	96.0
DYD3_k127_948939_5	cheY-homologous receiver domain	-	-	-	0.0000000000002577	76.0
DYD3_k127_95449_0	amino acid	K03294	GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039	-	0.0000000000000000000000000000000000000000000000000000006721	209.0
DYD3_k127_95449_1	NnrU protein	-	-	-	0.000000000000000000000000000004425	121.0
DYD3_k127_956998_0	Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family	K03308	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354	455.0
DYD3_k127_956998_1	Tetratricopeptide repeat	-	-	-	0.0000000000000000000000000000000000000000000000000000000528	210.0
DYD3_k127_956998_2	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	K01802	-	5.2.1.8	0.00000000000000000000007507	102.0
DYD3_k127_967233_0	COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs	K07303	-	1.3.99.16	9.441e-258	809.0
DYD3_k127_967233_1	Peptidylprolyl isomerase	K03769	GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564	5.2.1.8	0.000000000000000000000000000000000000000001368	157.0
DYD3_k127_967233_2	COG0436 Aspartate tyrosine aromatic aminotransferase	-	-	-	0.000000000000000000000003252	105.0
DYD3_k127_967233_3	-	-	-	-	0.00000000001273	70.0
DYD3_k127_979494_0	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family	K03455,K11745,K11747	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627	539.0
DYD3_k127_979494_1	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	K01872	-	6.1.1.7	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002302	385.0
DYD3_k127_979494_2	VIT family	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000001894	265.0
DYD3_k127_979494_3	-	K03561,K12287	-	-	0.0000000000000000000000000000000000000000000000000000000000000000001987	247.0
DYD3_k127_979494_4	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily	-	-	-	0.000000000000000000000000000000000000000000000004503	183.0
DYD3_k127_979494_5	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding	K03563	-	-	0.000000000000000000000002427	103.0
DYD3_k127_979494_6	-	-	-	-	0.000004436	49.0
DYD3_k127_98798_0	Major facilitator Superfamily	-	-	-	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006477	443.0
DYD3_k127_98798_1	Chromate resistance exported protein	-	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112	307.0
DYD3_k127_98798_2	Ornithine cyclodeaminase/mu-crystallin family	K01750,K19244,K19743	-	1.4.1.1,1.5.1.1,4.3.1.12	0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003761	305.0
DYD3_k127_988521_0	Belongs to the Glu Leu Phe Val dehydrogenases family	K00263	-	1.4.1.9	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007125	374.0
DYD3_k127_988521_1	Conserved hypothetical protein (DUF2461)	-	-	-	0.0000000000000000000000000000000000000000000000000000000000000000000000000753	257.0
DYD3_k127_988521_2	Cytochrome c554 and c-prime	-	-	-	0.00000000000000000000000000000000000000000005271	171.0
DYD3_k127_988521_3	-	-	-	-	0.0000000000000000000002249	101.0
DYD3_k127_98998_0	response regulator receiver	K02487,K06596	-	-	3.695e-300	987.0
DYD3_k127_98998_1	chemotaxis protein	K02660	-	-	0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006829	419.0
DYD3_k127_98998_10	Two component signalling adaptor domain	K06598	-	-	0.000000000000000000009099	98.0
DYD3_k127_98998_11	Acetyltransferase (GNAT) domain	K00619	-	2.3.1.1	0.0000000000000000008529	92.0
DYD3_k127_98998_2	Inositol monophosphatase	K05602	-	3.1.3.15	0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457	299.0
DYD3_k127_98998_3	adenosyltransferase	K00798	-	2.5.1.17	0.000000000000000000000000000000000000000000000000000000000000000000000000001061	258.0
DYD3_k127_98998_4	PFAM N-acetylmuramoyl-L-alanine amidase family 2	K03806	-	3.5.1.28	0.0000000000000000000000000000000000000000000000000000000000000000000008959	246.0
DYD3_k127_98998_5	COG1120 ABC-type cobalamin Fe3 -siderophores transport systems, ATPase components	K02013	-	3.6.3.34	0.0000000000000000000000000000000000000000000000000000000000001731	222.0
DYD3_k127_98998_6	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit	K09761	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360	2.1.1.193	0.00000000000000000000000000000000000000000000000000000000004022	213.0
DYD3_k127_98998_7	ABC-type Fe3 -hydroxamate transport system, periplasmic component	K02016	-	-	0.00000000000000000000000000000000000000000000000000000003096	208.0
DYD3_k127_98998_8	Membrane protein required for beta-lactamase induction	K03807	-	-	0.0000000000000000000000000000000007938	142.0
DYD3_k127_98998_9	-	-	-	-	0.00000000000000000000007774	99.0
DYD3_k127_992836_0	-	-	-	-	2.561e-286	895.0
DYD3_k127_992836_1	Aminotransferase	-	-	-	0.000000000000000000000000009198	112.0
DYD3_k127_992836_2	Belongs to the glycosyl hydrolase 2 family	-	-	-	0.0000000000000172	87.0
DYD3_k127_992836_3	cell wall binding repeat	-	-	-	0.0001041	55.0

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