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Overview

ID MAG03388
Name SHD3_bin.13
Sample SMP0084
Taxonomy
Kingdom Bacteria
Phylum Myxococcota
Class Polyangia
Order Polyangiales
Family Polyangiaceae
Genus JAFGBI01
Species
Assembly information
Completeness (%) 91.48
Contamination (%) 6.81
GC content (%) 66.0
N50 (bp) 13,328
Genome size (bp) 7,978,799

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes5383

Gene name Description KEGG GOs EC E-value Score Sequence
SHD3_k127_1002758_0 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000251 260.0
SHD3_k127_1002758_1 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000000000002061 130.0
SHD3_k127_1002758_2 Tetratricopeptide repeats - - - 0.0000000000000000000000000002366 127.0
SHD3_k127_1002758_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000004478 117.0
SHD3_k127_1004730_0 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006536 612.0
SHD3_k127_1004730_10 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000001108 195.0
SHD3_k127_1004730_11 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000002589 180.0
SHD3_k127_1004730_12 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000000000000000000000000000000004911 161.0
SHD3_k127_1004730_13 Thiamine biosynthesis K03154 - - 0.0000000000000000004082 88.0
SHD3_k127_1004730_14 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.000000000004264 76.0
SHD3_k127_1004730_2 ErfK ybiS ycfS ynhG family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008322 536.0
SHD3_k127_1004730_3 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003858 512.0
SHD3_k127_1004730_4 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 494.0
SHD3_k127_1004730_5 PFAM VanW family protein K18346 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 385.0
SHD3_k127_1004730_6 carboxylic ester hydrolase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004017 321.0
SHD3_k127_1004730_7 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005513 289.0
SHD3_k127_1004730_8 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000178 269.0
SHD3_k127_1004730_9 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000000000000000000000000000000000000000000000000000000000000005681 228.0
SHD3_k127_1010480_0 Pyridoxal-phosphate dependent enzyme K01738,K01883,K12339 - 2.5.1.47,6.1.1.16 7.856e-236 752.0
SHD3_k127_1010480_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 5.215e-226 714.0
SHD3_k127_1010480_10 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000003345 192.0
SHD3_k127_1010480_11 TIGRFAM phosphoesterase, MJ0936 family K07095 - - 0.0000000000000000000000000000000000000000000239 166.0
SHD3_k127_1010480_12 alpha/beta hydrolase fold K08680 - 4.2.99.20 0.000000000000000000000000000000000000000006938 168.0
SHD3_k127_1010480_13 HNH endonuclease - - - 0.00000000000000000000000000000000000002161 147.0
SHD3_k127_1010480_14 Cyclophilin-like K09143 - - 0.0000000000000000000000000000000000007612 143.0
SHD3_k127_1010480_15 - - - - 0.00000000000001337 79.0
SHD3_k127_1010480_16 YXWGXW repeat (2 copies) - - - 0.000007272 54.0
SHD3_k127_1010480_2 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582 - 3.1.11.5 1.371e-210 699.0
SHD3_k127_1010480_3 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 473.0
SHD3_k127_1010480_4 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 422.0
SHD3_k127_1010480_5 PFAM Glycoside hydrolase family 65, central catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 308.0
SHD3_k127_1010480_6 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006591 291.0
SHD3_k127_1010480_7 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01885,K01894 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000003954 269.0
SHD3_k127_1010480_8 Belongs to the short-chain dehydrogenases reductases (SDR) family K11153,K11161 - 1.1.1.300 0.000000000000000000000000000000000000000000000000000000000000000000006084 246.0
SHD3_k127_1010480_9 beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000001445 223.0
SHD3_k127_1011817_0 Lytic transglycolase K20628 - - 0.000000000000000000000000000000002942 140.0
SHD3_k127_1011817_1 GDP-mannose mannosyl hydrolase activity K01515,K03574,K12944 - 3.6.1.13,3.6.1.55 0.000000000000001269 82.0
SHD3_k127_1012222_0 Cellulase N-terminal ig-like domain K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 319.0
SHD3_k127_1012222_1 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000001764 173.0
SHD3_k127_1012222_2 polysaccharide deacetylase - - - 0.000000000000000000000002749 111.0
SHD3_k127_1012222_3 oxidoreductase activity K07114 - - 0.00000000000000000001468 106.0
SHD3_k127_1012440_0 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 604.0
SHD3_k127_1012440_1 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000111 225.0
SHD3_k127_1012440_2 cheY-homologous receiver domain K07657 - - 0.00000000000000000000000000000000000000006044 161.0
SHD3_k127_1015260_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 2.288e-231 726.0
SHD3_k127_1015260_1 Patatin-like phospholipase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 366.0
SHD3_k127_1015260_2 Electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 357.0
SHD3_k127_1015260_3 Electron transfer flavoprotein K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 349.0
SHD3_k127_1015260_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 332.0
SHD3_k127_1015260_5 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003211 323.0
SHD3_k127_1015260_6 - - - - 0.0000000000000000000000000000000000000005306 163.0
SHD3_k127_1015260_8 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000000000000000000004408 130.0
SHD3_k127_1016090_0 Belongs to the UPF0145 family - - - 0.0000000000000000000000528 102.0
SHD3_k127_1016090_1 Lipoprotein amino terminal region - - - 0.00000000000000002457 92.0
SHD3_k127_1016090_2 Uncharacterised ArCR, COG2043 - - - 0.00000005301 63.0
SHD3_k127_10184_0 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 6.178e-216 686.0
SHD3_k127_10184_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 374.0
SHD3_k127_10184_2 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171 346.0
SHD3_k127_10184_3 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000006249 196.0
SHD3_k127_10184_4 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000003522 144.0
SHD3_k127_10184_5 Glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.000000000000000000000000000000000000633 144.0
SHD3_k127_10184_6 Belongs to the P(II) protein family K04751 - - 0.000000000000000000000000004646 128.0
SHD3_k127_10184_7 Cyclase dehydrase - - - 0.00000000000000000000002754 103.0
SHD3_k127_10184_8 serine-type endopeptidase activity K08372 - - 0.00000000000003091 87.0
SHD3_k127_102529_0 Belongs to the glycosyl hydrolase 43 family K01181 GO:0003674,GO:0003824,GO:0004553,GO:0016787,GO:0016798,GO:0031176,GO:0033905,GO:0097599 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000378 226.0
SHD3_k127_102529_1 PFAM glycoside hydrolase, family 10 K01181 - 3.2.1.8 0.000000000001807 73.0
SHD3_k127_102529_2 Sel1-like repeats. K07126 - - 0.00000000001943 71.0
SHD3_k127_102529_3 Glycosyl hydrolases family 11 K01181 - 3.2.1.8 0.00000000549 62.0
SHD3_k127_1027501_0 PFAM Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 584.0
SHD3_k127_1027501_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 395.0
SHD3_k127_1027501_2 PFAM Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003712 280.0
SHD3_k127_1027501_3 PFAM Conserved Archaeal protein (DUF2204) - - - 0.000000000000000000000000004355 120.0
SHD3_k127_1027501_4 Protein of unknown function (DUF1328) - - - 0.00000000000005562 72.0
SHD3_k127_1027501_5 - - - - 0.000000005855 65.0
SHD3_k127_1051725_0 PEGA domain K02014 - - 4.184e-235 760.0
SHD3_k127_1051725_1 Family membership K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006664 319.0
SHD3_k127_1051725_2 - - - - 0.000000000000000000000000000000000000000000000000000004241 196.0
SHD3_k127_1061318_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 2.541e-238 758.0
SHD3_k127_1061318_1 Type II and III secretion system protein K02453 - - 5.282e-236 769.0
SHD3_k127_1061318_10 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003701 274.0
SHD3_k127_1061318_11 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001933 263.0
SHD3_k127_1061318_12 DNA-templated transcription, termination - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001259 260.0
SHD3_k127_1061318_13 - - - - 0.00000000000000000000000000000000000000000000000000000000000000006835 245.0
SHD3_k127_1061318_14 Type II secretion system (T2SS), protein J K02459 - - 0.00000000000000000000000000000000000000000000000000000000000006042 222.0
SHD3_k127_1061318_15 Family of unknown function (DUF695) - - - 0.0000000000000000000000000000000000000000000000000000000000004737 221.0
SHD3_k127_1061318_16 methyltransferase activity K00563 - 2.1.1.187 0.0000000000000000000000000000000000000000000000000001858 199.0
SHD3_k127_1061318_17 MASE1 - - - 0.000000000000000000000000000000000000000000001115 184.0
SHD3_k127_1061318_18 - - - - 0.000000000000000000000000000000000000000000004725 174.0
SHD3_k127_1061318_19 Prokaryotic N-terminal methylation motif K02457 - - 0.000000000000000000000000000000000000000000008989 171.0
SHD3_k127_1061318_2 tRNA synthetases class II (D, K and N) K09759 - 6.1.1.23 4.972e-226 710.0
SHD3_k127_1061318_21 Prokaryotic N-terminal methylation motif K02458 - - 0.0000000000000000000000000000000000000000002778 176.0
SHD3_k127_1061318_22 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000000002456 162.0
SHD3_k127_1061318_24 - - - - 0.0000000000000000000000000000283 127.0
SHD3_k127_1061318_25 Ferredoxin - - - 0.00000000000000000000000000297 128.0
SHD3_k127_1061318_26 General secretion pathway protein G K02456 - - 0.000000000000000003074 95.0
SHD3_k127_1061318_27 Collagen triple helix repeat (20 copies) - - - 0.00000000000001769 87.0
SHD3_k127_1061318_28 - - - - 0.0000000001227 72.0
SHD3_k127_1061318_3 response regulator K07713 - - 7.587e-221 693.0
SHD3_k127_1061318_4 Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor K00833 - 2.6.1.62 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 541.0
SHD3_k127_1061318_5 General secretion pathway protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004938 512.0
SHD3_k127_1061318_6 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 423.0
SHD3_k127_1061318_7 Type IV pilus assembly protein PilM; K02461 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 369.0
SHD3_k127_1061318_8 Type II secretion system (T2SS), protein K K02460 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002736 351.0
SHD3_k127_1061318_9 General secretion pathway protein C K02452 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001341 282.0
SHD3_k127_1064302_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1050.0
SHD3_k127_1064302_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 340.0
SHD3_k127_1064302_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003408 274.0
SHD3_k127_1064302_3 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000000000002435 237.0
SHD3_k127_1073073_0 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006665 496.0
SHD3_k127_1073073_1 Family membership K08884 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006089 323.0
SHD3_k127_1073073_2 Thrombospondin type 3 repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003282 267.0
SHD3_k127_1073073_3 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000005573 207.0
SHD3_k127_1073073_4 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000002737 160.0
SHD3_k127_1073073_5 ECF sigma factor K03088 - - 0.000000000000008045 84.0
SHD3_k127_1097436_0 Surface antigen - - - 8.973e-284 915.0
SHD3_k127_1097436_1 synthase K01858 - 5.5.1.4 5.409e-226 706.0
SHD3_k127_1097436_10 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000009064 173.0
SHD3_k127_1097436_12 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000000000000004419 106.0
SHD3_k127_1097436_13 PFAM regulatory protein TetR - - - 0.00000000000000000000009725 106.0
SHD3_k127_1097436_14 Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.0009642 46.0
SHD3_k127_1097436_2 Formate--tetrahydrofolate ligase K01938 - 6.3.4.3 8.078e-220 695.0
SHD3_k127_1097436_3 serine threonine protein kinase - - - 3.95e-208 678.0
SHD3_k127_1097436_4 MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004986 437.0
SHD3_k127_1097436_5 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004612 331.0
SHD3_k127_1097436_6 GtrA-like protein K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 312.0
SHD3_k127_1097436_7 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 287.0
SHD3_k127_1097436_8 Acetyltransferase (GNAT) domain K03817 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001045 245.0
SHD3_k127_1097436_9 phosphatidate phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000009788 198.0
SHD3_k127_1101954_0 Anticodon-binding domain of tRNA K01873 - 6.1.1.9 0.0 1247.0
SHD3_k127_1101954_1 unfolded protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000008071 243.0
SHD3_k127_1102511_0 Belongs to the glycosyl hydrolase 31 family K01811 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010410,GO:0010411,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044419,GO:0051704,GO:0071554,GO:0071704,GO:0085030,GO:1901575,GO:2000895,GO:2000899 3.2.1.177 1.935e-244 784.0
SHD3_k127_1102511_1 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 624.0
SHD3_k127_1102511_2 Cellulase N-terminal ig-like domain K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 504.0
SHD3_k127_1102511_3 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000002077 263.0
SHD3_k127_1102511_4 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000002969 159.0
SHD3_k127_1102511_5 - - - - 0.00000000000000000001047 108.0
SHD3_k127_1102511_7 chlorophyll binding - - - 0.00002281 51.0
SHD3_k127_1102511_8 lyase activity - - - 0.00003936 56.0
SHD3_k127_1102511_9 PBS lyase HEAT domain protein repeat-containing protein K22221 - - 0.00004738 55.0
SHD3_k127_1103085_0 Indolepyruvate ferredoxin oxidoreductase K00179,K04090 - 1.2.7.8 1.487e-211 671.0
SHD3_k127_1103085_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 3.064e-211 665.0
SHD3_k127_1103085_2 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008446 490.0
SHD3_k127_1103085_3 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008154 454.0
SHD3_k127_1103085_4 Site-specific DNA-methyltransferase (Adenine-specific) K06223 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004848 354.0
SHD3_k127_1103085_5 Apoptosis-inducing factor, mitochondrion-associated, C-term - - - 0.000000000000000000000000000000000000000000000000000000000000001616 224.0
SHD3_k127_1103085_6 PFAM Amino acid-binding ACT - - - 0.00000000000000000000000000000000000000000000005425 173.0
SHD3_k127_1103085_7 PFAM Pyruvate K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000774 165.0
SHD3_k127_1103085_8 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 - 1.7.99.1 0.00000000000000000000000000000001957 130.0
SHD3_k127_1104139_0 DNA helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 504.0
SHD3_k127_1104139_2 3-oxo-5-alpha-steroid 4-dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003664 306.0
SHD3_k127_1104139_3 NAD(P)H-binding K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000005328 272.0
SHD3_k127_1104139_4 - - - - 0.00000000000000000000000000000000000000000000000000000587 199.0
SHD3_k127_1104139_5 Protein conserved in bacteria - - - 0.000000000000000000000000000001896 138.0
SHD3_k127_1104139_7 Bacterial regulatory proteins, tetR family K16137 - - 0.0000000000000000000001699 105.0
SHD3_k127_1104139_8 NADPH-dependent FMN reductase - - - 0.00000000000000004411 89.0
SHD3_k127_1108490_0 B12 binding domain - - - 5.923e-222 702.0
SHD3_k127_1108490_1 PFAM Archaeal ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 498.0
SHD3_k127_1108490_10 PFAM Mo-dependent nitrogenase - - - 0.0000000000000003027 84.0
SHD3_k127_1108490_11 FHA domain - - - 0.000000000000001239 91.0
SHD3_k127_1108490_2 Beta propeller domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009454 483.0
SHD3_k127_1108490_3 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 430.0
SHD3_k127_1108490_4 ErfK ybiS ycfS ynhG family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 430.0
SHD3_k127_1108490_5 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 - 5.4.99.27 0.000000000000000000000000000000000000000000000000000000000000000104 235.0
SHD3_k127_1108490_6 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000008264 243.0
SHD3_k127_1108490_7 Protein serine threonine phosphatase K01090,K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000001272 224.0
SHD3_k127_1108490_8 Periplasmic protein TonB links inner and outer membranes - - - 0.000000000000000000000000000000000000000000000000000000000001575 220.0
SHD3_k127_1108490_9 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.000000000000000000000000000000001692 138.0
SHD3_k127_1120960_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000001072 229.0
SHD3_k127_1120960_1 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.00000000000004815 72.0
SHD3_k127_1121348_0 GHMP kinase, N-terminal domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 311.0
SHD3_k127_1121348_1 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000001116 213.0
SHD3_k127_1121348_2 peptidase U32 K08303 - - 0.00000000000000000000000000002511 130.0
SHD3_k127_1132665_0 metallopeptidase activity K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008927 552.0
SHD3_k127_1132665_1 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000001197 200.0
SHD3_k127_1132665_2 Beta-L-arabinofuranosidase, GH127 - - - 0.0000000000000000000000000000000000000000000000001509 198.0
SHD3_k127_1132665_3 Esterase PHB depolymerase K03932 - - 0.00000001185 68.0
SHD3_k127_1132665_4 - - - - 0.0000002472 59.0
SHD3_k127_1134486_0 hydrolase family 65, central catalytic K01194,K01838,K04844,K05342 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0016787,GO:0030312,GO:0044464,GO:0071944 2.4.1.64,3.2.1.28,5.4.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 393.0
SHD3_k127_1134486_1 Glycosyl hydrolase catalytic core - - - 0.000000000000000000000000000000000000000000000000000000000003787 220.0
SHD3_k127_1153361_0 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003661 509.0
SHD3_k127_1153361_1 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 434.0
SHD3_k127_1153361_12 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K15396 - 2.1.1.200 0.000000000000000000000000000007015 124.0
SHD3_k127_1153361_13 - - - - 0.0000000000000000000000128 105.0
SHD3_k127_1153361_14 - - - - 0.0000000000000009194 83.0
SHD3_k127_1153361_15 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.00000000000007944 84.0
SHD3_k127_1153361_2 PFAM Hemerythrin HHE cation binding domain K09155 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002971 387.0
SHD3_k127_1153361_3 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000797 363.0
SHD3_k127_1153361_4 FHA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008038 318.0
SHD3_k127_1153361_5 belongs to the thioredoxin family K03671,K05838,K07390,K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000472 283.0
SHD3_k127_1153361_6 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003922 288.0
SHD3_k127_1153361_7 PFAM PHP domain protein K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000527 274.0
SHD3_k127_1153361_8 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000003555 243.0
SHD3_k127_1153361_9 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033,K13890 - - 0.00000000000000000000000000000000000000000000000000000000000000005802 241.0
SHD3_k127_1172204_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004017 554.0
SHD3_k127_1172204_1 Belongs to the HMG-CoA reductase family K00054 - 1.1.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 451.0
SHD3_k127_1172204_2 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 417.0
SHD3_k127_1172204_3 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 408.0
SHD3_k127_1172204_4 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000001436 179.0
SHD3_k127_119274_0 Bacterial extracellular solute-binding protein K02027,K05813 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 496.0
SHD3_k127_119274_1 Belongs to the ABC transporter superfamily K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 406.0
SHD3_k127_119274_2 Binding-protein-dependent transport system inner membrane component K05815 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 364.0
SHD3_k127_119274_3 transmembrane transport K02025,K05814,K15771 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001021 282.0
SHD3_k127_119274_4 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000134 131.0
SHD3_k127_119274_5 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000001716 102.0
SHD3_k127_119274_6 - - - - 0.000008518 54.0
SHD3_k127_119274_7 Tumor necrosis factor receptor superfamily member 18 K05154 GO:0001932,GO:0001934,GO:0002237,GO:0002376,GO:0002682,GO:0002684,GO:0002685,GO:0002687,GO:0002694,GO:0003674,GO:0004888,GO:0005031,GO:0005035,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008219,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009897,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010033,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010941,GO:0012501,GO:0016020,GO:0016021,GO:0019220,GO:0019221,GO:0019222,GO:0023051,GO:0023052,GO:0023056,GO:0030155,GO:0030334,GO:0030335,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032496,GO:0032501,GO:0032502,GO:0032879,GO:0033209,GO:0033993,GO:0034097,GO:0034612,GO:0038023,GO:0040012,GO:0040017,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042509,GO:0042531,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043207,GO:0044425,GO:0044459,GO:0044464,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045785,GO:0045937,GO:0046425,GO:0046427,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0050730,GO:0050731,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051249,GO:0051270,GO:0051272,GO:0051704,GO:0051707,GO:0051716,GO:0060089,GO:0060255,GO:0060548,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071944,GO:0080090,GO:0097190,GO:0098552,GO:1901700,GO:1902105,GO:1902531,GO:1902533,GO:1903706,GO:1904892,GO:1904894,GO:2000026,GO:2000145,GO:2000147 - 0.0006232 49.0
SHD3_k127_1211636_0 4Fe-4S binding domain - - - 2.628e-218 693.0
SHD3_k127_1211636_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 444.0
SHD3_k127_1211636_2 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 404.0
SHD3_k127_1211636_3 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006751 364.0
SHD3_k127_1211636_4 - - - - 0.000000000000000000000000000000000000000000000115 191.0
SHD3_k127_1211636_6 Binds the 23S rRNA K02909 - - 0.0000000000000000000000005058 106.0
SHD3_k127_1211636_7 Uncharacterised protein family (UPF0158) - - - 0.0000000000005472 82.0
SHD3_k127_1211636_9 PIN domain - - - 0.000002778 56.0
SHD3_k127_1212966_0 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 343.0
SHD3_k127_1212966_1 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000001334 220.0
SHD3_k127_1212966_2 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000006949 204.0
SHD3_k127_1212966_3 protein trimerization - - - 0.000000000000000000000000000000000000000000000000009461 192.0
SHD3_k127_1212966_4 - - - - 0.0000000000000000000000000000000007121 137.0
SHD3_k127_1212966_5 2-epimerase K16213 - 5.1.3.11 0.00000000000000000000007838 110.0
SHD3_k127_1212966_6 Catalyzes the reversible epimerization of cellobiose to 4-O-beta-D-glucopyranosyl-D-mannose (Glc-Man) K16213 - 5.1.3.11 0.000000000000000001456 93.0
SHD3_k127_1222337_0 transport system, permease and ATPase K02471 - - 1.228e-218 696.0
SHD3_k127_1222337_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 321.0
SHD3_k127_1222337_2 Right handed beta helix region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001491 287.0
SHD3_k127_122911_0 CBD_II K19668 - 3.2.1.91 1.289e-205 657.0
SHD3_k127_122911_1 Pfam SNARE associated Golgi protein - - - 1.515e-199 644.0
SHD3_k127_122911_2 COGs COG3533 conserved K09955 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008119 561.0
SHD3_k127_122911_3 Sel1-like repeats. K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002927 508.0
SHD3_k127_122911_4 Alpha amylase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 457.0
SHD3_k127_122911_5 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 321.0
SHD3_k127_122911_6 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004804 267.0
SHD3_k127_122911_7 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000000000000000000008121 230.0
SHD3_k127_122911_8 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000000000000000001015 175.0
SHD3_k127_122911_9 homoserine transmembrane transporter activity K03329,K16327 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015318,GO:0015711,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1903825,GO:1905039 - 0.000001723 55.0
SHD3_k127_1233538_0 Cellulose synthase K00694 - 2.4.1.12 4.545e-197 633.0
SHD3_k127_1233538_1 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 595.0
SHD3_k127_1233538_2 Glucose-6-phosphate dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 332.0
SHD3_k127_1233538_3 STAS domain K04749 - - 0.00000000000131 75.0
SHD3_k127_1247444_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 1.267e-230 724.0
SHD3_k127_1247444_1 Isocitrate/isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005992 515.0
SHD3_k127_1247444_10 Macrophage mannose receptor 1-like K06560 GO:0002237,GO:0002376,GO:0003674,GO:0004888,GO:0005488,GO:0005537,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005886,GO:0005887,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009986,GO:0009987,GO:0010008,GO:0010033,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0023052,GO:0030246,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0032496,GO:0033993,GO:0034097,GO:0034341,GO:0036094,GO:0038023,GO:0038024,GO:0042221,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045087,GO:0048029,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0051716,GO:0060089,GO:0065007,GO:0070670,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071346,GO:0071353,GO:0071396,GO:0071944,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:1901700,GO:1901701 - 0.0001319 53.0
SHD3_k127_1247444_3 Alcohol dehydrogenase GroES-like domain K00001 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 302.0
SHD3_k127_1247444_4 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000349 275.0
SHD3_k127_1247444_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000002726 235.0
SHD3_k127_1247444_6 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000000000000181 201.0
SHD3_k127_1247444_7 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000000003157 180.0
SHD3_k127_1247444_8 aminopeptidase activity - - - 0.00000000000000000000000000000000000000000001003 181.0
SHD3_k127_1247444_9 C-type lectin domain family 10, member K06721,K10063 GO:0002218,GO:0002220,GO:0002223,GO:0002246,GO:0002248,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006952,GO:0006954,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009611,GO:0009987,GO:0016020,GO:0023052,GO:0030246,GO:0031347,GO:0031349,GO:0032501,GO:0042060,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0048771,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944,GO:0080134,GO:0090594,GO:0097709 - 0.0000001815 60.0
SHD3_k127_1263633_0 phosphatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004389 380.0
SHD3_k127_1263633_2 Zn peptidase - - - 0.0000000000000000000000000000006672 140.0
SHD3_k127_1263633_3 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000002268 128.0
SHD3_k127_1272895_0 - - - - 0.000000000000000000000005788 121.0
SHD3_k127_1272895_1 Protein conserved in bacteria K07654 - 2.7.13.3 0.0000000000003189 85.0
SHD3_k127_1272895_2 C-type lectin (CTL) or carbohydrate-recognition domain (CRD) - - - 0.00000000005896 78.0
SHD3_k127_1272895_3 Lipoprotein amino terminal region - - - 0.000001606 60.0
SHD3_k127_1273552_0 PEP-utilising enzyme, mobile domain K01006 - 2.7.9.1 0.0 1056.0
SHD3_k127_1273552_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 2e-323 1018.0
SHD3_k127_1273552_10 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002083 263.0
SHD3_k127_1273552_12 Putative exonuclease, RdgC K03554 - - 0.0000000000000000000000000000000000000000000000000000001047 202.0
SHD3_k127_1273552_13 May be involved in recombination - - - 0.000000000000000000000000000000000000000000000001349 182.0
SHD3_k127_1273552_14 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000001898 173.0
SHD3_k127_1273552_15 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000000001312 120.0
SHD3_k127_1273552_3 High confidence in function and specificity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 579.0
SHD3_k127_1273552_4 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 477.0
SHD3_k127_1273552_5 Belongs to the enoyl-CoA hydratase isomerase family K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003568 454.0
SHD3_k127_1273552_7 Phospholipase D. Active site motifs. K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004838 305.0
SHD3_k127_1273552_8 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004343 295.0
SHD3_k127_1273552_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003417 289.0
SHD3_k127_1277483_0 Belongs to the N(4) N(6)-methyltransferase family K00590 - 2.1.1.113 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002884 509.0
SHD3_k127_1277483_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000262 467.0
SHD3_k127_1277483_10 transferase activity, transferring hexosyl groups - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008194,GO:0008610,GO:0009058,GO:0009247,GO:0009405,GO:0009605,GO:0009607,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0020012,GO:0030682,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044464,GO:0046467,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0071704,GO:0071944,GO:0075136,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.0000000000000000000000000000000211 141.0
SHD3_k127_1277483_11 Fibronectin type 3 domain - - - 0.0000000000000000000000000001561 134.0
SHD3_k127_1277483_12 PFAM Hemerythrin HHE cation binding domain protein - - - 0.00000000000000000000006032 106.0
SHD3_k127_1277483_13 oxidoreductase activity K07114 - - 0.0000000000000000002206 101.0
SHD3_k127_1277483_14 - - - - 0.00000000000003436 84.0
SHD3_k127_1277483_15 - - - - 0.000000000002088 70.0
SHD3_k127_1277483_16 PDZ DHR GLGF domain protein K11749 - - 0.00002981 54.0
SHD3_k127_1277483_2 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 305.0
SHD3_k127_1277483_4 Xylose isomerase domain protein TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000006119 235.0
SHD3_k127_1277483_5 IgA Peptidase M64 - - - 0.00000000000000000000000000000000000000000000000000000000001926 232.0
SHD3_k127_1277483_6 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.0000000000000000000000000000000000000000000000000000001302 201.0
SHD3_k127_1277483_7 addiction module antidote protein HigA K07110,K21686 - - 0.000000000000000000000000000000000000001158 159.0
SHD3_k127_1277483_8 - - - - 0.000000000000000000000000000000000239 147.0
SHD3_k127_1277483_9 Periplasmic binding protein LacI transcriptional regulator K02529 - - 0.00000000000000000000000000000001356 138.0
SHD3_k127_1278637_0 helicase K03657 - 3.6.4.12 1.952e-249 801.0
SHD3_k127_1278637_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 1.792e-214 670.0
SHD3_k127_1278637_10 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000005085 165.0
SHD3_k127_1278637_11 metal cluster binding K06940 - - 0.000000000000000000000000009149 128.0
SHD3_k127_1278637_12 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00000000000000000003474 92.0
SHD3_k127_1278637_13 PFAM plasmid stabilization system - - - 0.000000000000008445 81.0
SHD3_k127_1278637_14 - - - - 0.00004849 48.0
SHD3_k127_1278637_2 Family membership K08884 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 390.0
SHD3_k127_1278637_3 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009265 318.0
SHD3_k127_1278637_4 UTRA domain K03710 - - 0.0000000000000000000000000000000000000000000000000000000000000001055 231.0
SHD3_k127_1278637_5 Tryptophan synthase alpha chain K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000653 221.0
SHD3_k127_1278637_6 amine dehydrogenase activity K19668 - 3.2.1.91 0.0000000000000000000000000000000000000000000000000000006206 218.0
SHD3_k127_1278637_7 Sulfatase-modifying factor enzyme 1 K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000004549 197.0
SHD3_k127_1278637_8 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000001768 186.0
SHD3_k127_1278637_9 involved in molybdopterin and THIamine biosynthesis family 1 K03148,K21029,K22132 GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016829,GO:0016835,GO:0016836,GO:0030955,GO:0031402,GO:0031420,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0046872,GO:0061503,GO:0061504,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.7.7.73,2.7.7.80 0.000000000000000000000000000000000000000000000002078 183.0
SHD3_k127_1280565_0 peptidyl-tyrosine sulfation - - - 5.06e-208 668.0
SHD3_k127_1280565_1 NUBPL iron-transfer P-loop NTPase K04562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 522.0
SHD3_k127_1280565_10 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342,K10857 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000478 284.0
SHD3_k127_1280565_11 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001509 271.0
SHD3_k127_1280565_12 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000007005 267.0
SHD3_k127_1280565_13 Extensin-like protein C-terminus - - - 0.000000000000000000000000000000000000132 153.0
SHD3_k127_1280565_14 Uncharacterised protein family (UPF0259) - - - 0.0000000000000000000000000000000000544 146.0
SHD3_k127_1280565_15 SurA N-terminal domain K03771 - 5.2.1.8 0.000000000000000000000000000003145 137.0
SHD3_k127_1280565_16 Zinc-dependent metalloprotease - - - 0.00000000000000000004743 102.0
SHD3_k127_1280565_17 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000000000007328 105.0
SHD3_k127_1280565_18 Belongs to the glycosyl hydrolase family 6 - - - 0.000000000000002795 90.0
SHD3_k127_1280565_2 cell adhesion involved in biofilm formation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004241 490.0
SHD3_k127_1280565_20 Glycosyl hydrolase family 26 K01218 - 3.2.1.78 0.000000008753 69.0
SHD3_k127_1280565_3 Aerotolerance regulator N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000702 480.0
SHD3_k127_1280565_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005991 490.0
SHD3_k127_1280565_5 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 347.0
SHD3_k127_1280565_6 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 340.0
SHD3_k127_1280565_7 LysM domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007043 326.0
SHD3_k127_1280565_8 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000532 311.0
SHD3_k127_1280565_9 Serine Threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003913 312.0
SHD3_k127_1284519_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008842 572.0
SHD3_k127_1284519_1 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005268 569.0
SHD3_k127_1284519_10 Bacterial antitoxin of type II TA system, VapB - - - 0.0000000000000002369 81.0
SHD3_k127_1284519_11 Putative transposase - - - 0.00000000000002372 74.0
SHD3_k127_1284519_12 Fungal-type cellulose-binding domain K18578 - 3.2.1.155 0.000000000001289 73.0
SHD3_k127_1284519_13 Regulator of chromosome condensation - - - 0.0000000002588 62.0
SHD3_k127_1284519_14 Repeat of unknown function (DUF346) - - - 0.00000002797 67.0
SHD3_k127_1284519_15 YcxB-like protein - - - 0.0000000286 63.0
SHD3_k127_1284519_16 cellulose binding - - - 0.00000005673 67.0
SHD3_k127_1284519_17 - - - - 0.000706 49.0
SHD3_k127_1284519_2 Endonuclease Exonuclease Phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004696 287.0
SHD3_k127_1284519_3 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000001011 214.0
SHD3_k127_1284519_4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000000000000000000000000000000000000000000000000000005469 204.0
SHD3_k127_1284519_5 PIN domain - - - 0.0000000000000000000000000000000000003256 147.0
SHD3_k127_1284519_6 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000001883 134.0
SHD3_k127_1284519_7 Homologues of snake disintegrins - - - 0.000000000000000000000000000002159 126.0
SHD3_k127_1284519_8 cellulose binding - - - 0.000000000000000000000000006719 129.0
SHD3_k127_1284519_9 - - - - 0.0000000000000000000000003035 112.0
SHD3_k127_1288308_0 copper-translocating P-type ATPase K01534 - 3.6.3.3,3.6.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 600.0
SHD3_k127_1288308_1 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 470.0
SHD3_k127_1288308_11 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.000000000000000000000000000000000225 140.0
SHD3_k127_1288308_12 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000000000006384 124.0
SHD3_k127_1288308_13 Belongs to the bacterial histone-like protein family - - - 0.0000000000000000000000000002769 118.0
SHD3_k127_1288308_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 442.0
SHD3_k127_1288308_3 Belongs to the ATCase OTCase family K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002709 297.0
SHD3_k127_1288308_4 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000001816 238.0
SHD3_k127_1288308_6 Peptidase dimerisation domain K12941 - - 0.00000000000000000000000000000000000000000000000000000000000000002434 228.0
SHD3_k127_1288308_7 Protease prsW family - - - 0.00000000000000000000000000000000000000000000000000000000000000003308 237.0
SHD3_k127_1288308_8 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000008029 207.0
SHD3_k127_1296598_0 Mur ligase family, catalytic domain K02558 - 6.3.2.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 563.0
SHD3_k127_1296598_1 PFAM Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 351.0
SHD3_k127_1296598_10 Protein of unknown function (DUF3108) - - - 0.000000000000000005467 95.0
SHD3_k127_1296598_11 Heavy-metal resistance - - - 0.0000000000005548 78.0
SHD3_k127_1296598_12 Reverse transcriptase (RNA-dependent DNA polymerase) - - - 0.000000000004459 72.0
SHD3_k127_1296598_13 Protein of unknown function (DUF3018) - - - 0.00000000004218 69.0
SHD3_k127_1296598_2 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202 308.0
SHD3_k127_1296598_3 ErfK ybiS ycfS ynhG family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001162 275.0
SHD3_k127_1296598_4 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000004155 260.0
SHD3_k127_1296598_5 3D domain - - - 0.000000000000000000000000000000000000000000000000000000000000000147 234.0
SHD3_k127_1296598_6 - - - - 0.0000000000000000000000000000000000000000000000005325 180.0
SHD3_k127_1296598_7 SEC-C motif - - - 0.0000000000000000000000000000000000000000000003077 171.0
SHD3_k127_1296598_8 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.00000000000000000000000000000000001372 138.0
SHD3_k127_1296598_9 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000004621 123.0
SHD3_k127_1300409_0 TIGRFAM alpha-glucan - - - 0.0 1313.0
SHD3_k127_1300409_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.0 1164.0
SHD3_k127_1300409_2 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 2.832e-282 876.0
SHD3_k127_1300409_3 cAMP biosynthetic process K18672 - 2.7.7.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 312.0
SHD3_k127_1309652_0 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005297 559.0
SHD3_k127_1309652_1 transposition K07497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003381 297.0
SHD3_k127_1309652_10 Rhs family - - - 0.000000006648 65.0
SHD3_k127_1309652_11 DNA segregation ATPase FtsK SpoIIIE K03466 - - 0.00002073 48.0
SHD3_k127_1309652_12 Belongs to the peptidase S1B family - - - 0.0001165 54.0
SHD3_k127_1309652_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000856 271.0
SHD3_k127_1309652_3 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000003253 233.0
SHD3_k127_1309652_4 Integrase - - - 0.0000000000000000000000000000000000000000000001384 178.0
SHD3_k127_1309652_6 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000002606 112.0
SHD3_k127_1309652_7 IstB-like ATP binding protein - - - 0.0000000000000000009074 94.0
SHD3_k127_1309652_8 transposition K07497 - - 0.00000000000000002041 94.0
SHD3_k127_1311395_0 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006823 358.0
SHD3_k127_1311395_1 NAD dependent epimerase/dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 352.0
SHD3_k127_1311395_2 Transporter associated domain K06189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 296.0
SHD3_k127_1311395_3 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000007284 265.0
SHD3_k127_1311395_4 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000001977 259.0
SHD3_k127_1311395_5 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000001725 236.0
SHD3_k127_1311395_7 COG0512 Anthranilate para-aminobenzoate synthases component II K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000005061 55.0
SHD3_k127_1317356_0 Belongs to the glycosyl hydrolase 57 family K16149 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004108 411.0
SHD3_k127_1317356_1 PFAM D12 class N6 adenine-specific DNA methyltransferase K06223 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000005496 266.0
SHD3_k127_1317356_2 Starch synthase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000003143 221.0
SHD3_k127_1322573_0 amine oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 318.0
SHD3_k127_1322573_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000006124 236.0
SHD3_k127_1322573_2 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000002871 194.0
SHD3_k127_1322573_3 Domain of unknown function (DUF362) - - - 0.00000000000000000000000002688 121.0
SHD3_k127_1322573_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000005806 118.0
SHD3_k127_133783_0 alpha-N-arabinofuranosidase K01209 - 3.2.1.55 1.078e-213 674.0
SHD3_k127_133783_1 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508 493.0
SHD3_k127_133783_2 zinc-ribbon domain - - - 0.000000000000000000000000000000000000000000000000005504 203.0
SHD3_k127_133783_3 Bifunctional nuclease K08999 - - 0.0000000000000000000223 98.0
SHD3_k127_1359548_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003108 379.0
SHD3_k127_1359548_1 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003687 361.0
SHD3_k127_1359548_2 Domain of unknown function (DUF4423) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 350.0
SHD3_k127_1359548_3 Glycosyl hydrolase family 26 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007904 269.0
SHD3_k127_1359548_5 - - - - 0.00000000002489 76.0
SHD3_k127_1359548_7 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000001684 57.0
SHD3_k127_1359548_8 Sigma-70, region 4 - - - 0.0003823 50.0
SHD3_k127_1370422_0 ErfK ybiS ycfS ynhG family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009916 466.0
SHD3_k127_1370422_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 311.0
SHD3_k127_1370422_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004343 251.0
SHD3_k127_1370422_3 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000003787 220.0
SHD3_k127_1384875_0 Stabilin 1 K19013,K19020 GO:0003674,GO:0003824,GO:0005041,GO:0005044,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006952,GO:0007154,GO:0007155,GO:0007267,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0012506,GO:0015035,GO:0015036,GO:0016020,GO:0016021,GO:0016192,GO:0016491,GO:0016525,GO:0016667,GO:0022603,GO:0022610,GO:0023052,GO:0030139,GO:0030169,GO:0030228,GO:0030659,GO:0030666,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0038024,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044877,GO:0045765,GO:0048519,GO:0050789,GO:0050793,GO:0050896,GO:0051093,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051704,GO:0051707,GO:0055114,GO:0065007,GO:0071813,GO:0071814,GO:0071944,GO:0097708,GO:0098542,GO:0098588,GO:0098657,GO:0098805,GO:1901342,GO:1901343,GO:2000026,GO:2000181 - 0.0005343 53.0
SHD3_k127_1397855_0 Belongs to the RtcB family K14415 - 6.5.1.3 1.57e-197 626.0
SHD3_k127_1397855_1 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008936 451.0
SHD3_k127_1397855_10 general secretion pathway protein K02456,K02650,K10926,K12285 - - 0.000001308 57.0
SHD3_k127_1397855_2 phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 411.0
SHD3_k127_1397855_3 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000004147 229.0
SHD3_k127_1397855_4 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000002478 227.0
SHD3_k127_1397855_5 PFAM Archease protein family (DUF101 UPF0211) K00974 - 2.7.7.72 0.000000000000000000000000000004907 129.0
SHD3_k127_1397855_9 - - - - 0.0000002297 63.0
SHD3_k127_140150_0 CBD_II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 587.0
SHD3_k127_140150_1 Patatin-like phospholipase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003704 450.0
SHD3_k127_140150_10 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000002371 145.0
SHD3_k127_140150_11 Uncharacterized conserved protein (DUF2277) - - - 0.0000000000000000000000000001503 122.0
SHD3_k127_140150_12 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.000000000000000000000001082 115.0
SHD3_k127_140150_13 Lytic transglycolase K20628 - - 0.000006003 59.0
SHD3_k127_140150_2 Alpha-L-fucosidase K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007308 432.0
SHD3_k127_140150_3 Cleaves the N-terminal amino acid of tripeptides K01258 - 3.4.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 422.0
SHD3_k127_140150_4 Bacterial periplasmic substrate-binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 382.0
SHD3_k127_140150_5 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004871 347.0
SHD3_k127_140150_6 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007504 300.0
SHD3_k127_140150_7 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004101 299.0
SHD3_k127_140150_8 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000004233 228.0
SHD3_k127_140150_9 membrane - - - 0.000000000000000000000000000000000000000001295 165.0
SHD3_k127_1402412_0 radical SAM domain protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 392.0
SHD3_k127_1402412_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000008465 271.0
SHD3_k127_1402412_10 hydrolase (HAD superfamily) K07025 - - 0.0000000000004753 78.0
SHD3_k127_1402412_2 TIGRFAM hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 - 2.4.1.80 0.000000000000000000000000000000000000000000000000000000000000000003455 241.0
SHD3_k127_1402412_3 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000000000000000000001683 226.0
SHD3_k127_1402412_4 Sigma-70, region 4 - - - 0.00000000000000000000000000000000000000000000000000000000125 208.0
SHD3_k127_1402412_5 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.000000000000000000000000000000000000000000000000008684 190.0
SHD3_k127_1402412_6 AMMECR1 K06990 - - 0.000000000000000000000000000000000000000000002703 174.0
SHD3_k127_1402412_7 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000009837 141.0
SHD3_k127_1402412_9 AI-2E family transporter - - - 0.000000000000000002002 89.0
SHD3_k127_1406797_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000182 257.0
SHD3_k127_1406797_1 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000007929 149.0
SHD3_k127_1406797_10 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000003287 68.0
SHD3_k127_1406797_13 calcium ion binding - GO:0002009,GO:0002165,GO:0003674,GO:0005198,GO:0005201,GO:0005575,GO:0005576,GO:0007275,GO:0007424,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007552,GO:0007560,GO:0007591,GO:0008150,GO:0008362,GO:0008587,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0022404,GO:0031012,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040003,GO:0040005,GO:0042303,GO:0042335,GO:0044421,GO:0044719,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0060429,GO:0060541,GO:0060562,GO:0065007,GO:0065008,GO:0090066 - 0.0000334 56.0
SHD3_k127_1406797_2 domain, Protein - - - 0.00000000000000000000000000006892 136.0
SHD3_k127_1406797_3 cell septum assembly K03528 - - 0.000000000000000000000007222 113.0
SHD3_k127_1406797_4 Site-specific DNA-methyltransferase (Adenine-specific) K06223 - 2.1.1.72 0.0000000000000000000001419 102.0
SHD3_k127_1406797_5 Putative transposase - - - 0.00000000000000000008588 92.0
SHD3_k127_1406797_6 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000002661 83.0
SHD3_k127_1406797_7 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system - - - 0.00000000000001087 75.0
SHD3_k127_1406797_8 IS66 C-terminal element K07484 - - 0.00000000000003303 75.0
SHD3_k127_1406797_9 COG3325 Chitinase K01183 - 3.2.1.14 0.00000000009003 76.0
SHD3_k127_1412494_0 repeat protein - - - 0.0 1210.0
SHD3_k127_1412494_1 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000002237 211.0
SHD3_k127_1412494_2 Belongs to the glycosyl hydrolase 26 family - - - 0.000000696 55.0
SHD3_k127_1438966_0 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005538 437.0
SHD3_k127_1438966_1 Signal peptide peptidase K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005751 404.0
SHD3_k127_1438966_2 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004331 389.0
SHD3_k127_1438966_3 alginic acid biosynthetic process K01729 - 4.2.2.3 0.000000000000000000000000000000002293 149.0
SHD3_k127_1438966_4 amine dehydrogenase activity K20276 - - 0.00000000000000000006829 94.0
SHD3_k127_1438966_5 - - - - 0.0000008065 61.0
SHD3_k127_1438966_6 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.000002103 59.0
SHD3_k127_144006_0 SMART Tetratricopeptide domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 530.0
SHD3_k127_144006_1 Putative restriction endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001958 248.0
SHD3_k127_144006_2 Peptidase M60, enhancin and enhancin-like - - - 0.0000000000000000001167 98.0
SHD3_k127_144006_3 Beta-L-arabinofuranosidase, GH127 - - - 0.00000000002988 76.0
SHD3_k127_1443600_0 AcrB/AcrD/AcrF family K07787,K15726 - - 0.0 1024.0
SHD3_k127_1443600_1 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004142 406.0
SHD3_k127_1443600_2 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001732 396.0
SHD3_k127_1443600_3 HAMP domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003307 282.0
SHD3_k127_1443600_4 Histidine kinase K02668,K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000002083 194.0
SHD3_k127_1443600_5 transporter K08369 - - 0.000000004686 68.0
SHD3_k127_1443600_6 Major facilitator Superfamily K08369 - - 0.00001387 57.0
SHD3_k127_144592_0 Nucleotidyl transferase AbiEii toxin, Type IV TA system K09144 - - 0.000000000000000000000000000000000000000000000003078 184.0
SHD3_k127_144592_1 Pfam:Gp37_Gp68 - - - 0.000000000000000000000000000001837 126.0
SHD3_k127_144592_2 metallopeptidase activity K16922 - - 0.0000000000000000000000000009526 121.0
SHD3_k127_144592_3 Transcriptional regulator - - - 0.0000000000000000000000001111 117.0
SHD3_k127_1447150_0 Male sterility protein K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 477.0
SHD3_k127_1447150_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 407.0
SHD3_k127_1447150_2 cephalosporin hydroxylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008074 321.0
SHD3_k127_1447150_3 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000000000000000006903 259.0
SHD3_k127_1447150_4 Polysaccharide biosynthesis protein K03328 - - 0.000000000000000000000000000000000000000000000000000000000000004257 237.0
SHD3_k127_1447150_5 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000005319 226.0
SHD3_k127_1447150_6 Glycosyl transferase family group 2 K07011 - - 0.00000000000000000000000000000000000000000001035 177.0
SHD3_k127_1447150_7 - - - - 0.0000000000000002487 92.0
SHD3_k127_1447150_8 domain, Protein - - - 0.00000000002081 75.0
SHD3_k127_1447150_9 Evidence 5 No homology to any previously reported sequences - - - 0.00006317 55.0
SHD3_k127_1454529_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 1.953e-204 657.0
SHD3_k127_1454529_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 608.0
SHD3_k127_1454529_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000001711 208.0
SHD3_k127_1454529_3 Di-haem oxidoreductase, putative peroxidase - - - 0.00000000000000000000000000000000000000000000005342 186.0
SHD3_k127_1454529_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000331 177.0
SHD3_k127_1454529_5 - - - - 0.0001802 53.0
SHD3_k127_1464457_0 Biotin and Thiamin Synthesis associated domain K03150 - 4.1.99.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009316 614.0
SHD3_k127_1464457_1 Fumarase C C-terminus K01744 - 4.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 590.0
SHD3_k127_1464457_10 Belongs to the serpin family K13963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007143 289.0
SHD3_k127_1464457_11 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001657 265.0
SHD3_k127_1464457_12 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002722 246.0
SHD3_k127_1464457_13 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000000000000000000045 217.0
SHD3_k127_1464457_14 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000002987 207.0
SHD3_k127_1464457_15 RES - - - 0.000000000000000000000000000000000000000000000000000000000323 211.0
SHD3_k127_1464457_16 Chaperone of endosialidase - - - 0.000000000000000000000000000000000000001755 160.0
SHD3_k127_1464457_17 Chaperone of endosialidase - - - 0.000000000000000000000000000000000000004059 159.0
SHD3_k127_1464457_18 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000109 124.0
SHD3_k127_1464457_2 Ferrous iron transport protein B - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 582.0
SHD3_k127_1464457_20 Heavy metal transport detoxification protein K07213 - - 0.000000000001869 69.0
SHD3_k127_1464457_23 Carbohydrate-binding module family 63 protein K20628 - - 0.00009318 54.0
SHD3_k127_1464457_24 PFAM Major Facilitator Superfamily K08153,K19576 - - 0.0005916 52.0
SHD3_k127_1464457_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003869 393.0
SHD3_k127_1464457_4 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 379.0
SHD3_k127_1464457_5 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 376.0
SHD3_k127_1464457_6 Elongator protein 3, MiaB family, Radical SAM K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003848 368.0
SHD3_k127_1464457_8 proteins of the AP superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009622 353.0
SHD3_k127_1464457_9 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006472 339.0
SHD3_k127_1489682_0 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 4.6e-228 727.0
SHD3_k127_1489682_1 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 1.028e-220 711.0
SHD3_k127_1489682_2 Alpha-l-fucosidase K01206 GO:0003674,GO:0003824,GO:0004553,GO:0004560,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006516,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0015928,GO:0016787,GO:0016798,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007201 332.0
SHD3_k127_1489682_3 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002631 276.0
SHD3_k127_1490544_0 DNA polymerase X family K02347 - - 4.794e-239 752.0
SHD3_k127_1490544_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 419.0
SHD3_k127_1490544_2 Family membership K08884 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001389 280.0
SHD3_k127_1490544_3 phosphorelay signal transduction system K02437 - - 0.00000000000000000000000000000002602 139.0
SHD3_k127_1490544_4 cytochrome c - - - 0.00000000000004371 86.0
SHD3_k127_1490544_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0003683 45.0
SHD3_k127_1490544_6 cytochrome C family protein - - - 0.0004151 53.0
SHD3_k127_1500838_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 496.0
SHD3_k127_1500838_1 nUDIX hydrolase K01515,K03574 - 3.6.1.13,3.6.1.55 0.000000000000000000000000000000000000000000000000000008276 198.0
SHD3_k127_1500838_2 HIT domain K02503 - - 0.00000000000000000000000000000000000000000001322 166.0
SHD3_k127_1500838_3 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000001177 103.0
SHD3_k127_1503430_1 (GGDEF) domain - - - 0.00000000000000000000000002369 121.0
SHD3_k127_1512765_0 TIGRFAM YD repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 450.0
SHD3_k127_1512765_1 Belongs to the peptidase S1B family K01318 - 3.4.21.19 0.0000000000000000000000000000000000000000071 168.0
SHD3_k127_1514942_0 Dehydrogenase K00248,K00249,K20035 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016627,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050662,GO:0052890,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.3.8.1,1.3.8.7 1.096e-232 737.0
SHD3_k127_1514942_1 Molecular chaperone. Has ATPase activity K04079 - - 6.514e-207 661.0
SHD3_k127_1514942_10 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000003799 207.0
SHD3_k127_1514942_11 - K07112 - - 0.000000000000000000000000000000000000000000000115 177.0
SHD3_k127_1514942_12 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000001758 161.0
SHD3_k127_1514942_14 OsmC-like protein K07397 - - 0.0000000000000000000001035 103.0
SHD3_k127_1514942_15 Sulphur transport K07112 - - 0.000000000000000000006612 108.0
SHD3_k127_1514942_16 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000007673 84.0
SHD3_k127_1514942_17 - - - - 0.000000000001348 78.0
SHD3_k127_1514942_18 domain, Protein - - - 0.0000000001517 74.0
SHD3_k127_1514942_2 Electron transfer flavoprotein K03522,K22432 - 1.3.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005055 493.0
SHD3_k127_1514942_3 Electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 418.0
SHD3_k127_1514942_4 Glycoside hydrolase family 44 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 409.0
SHD3_k127_1514942_5 Calcineurin-like phosphoesterase K03651 - 3.1.4.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002495 282.0
SHD3_k127_1514942_6 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000536 278.0
SHD3_k127_1514942_7 Cytochrome b/b6/petB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000766 263.0
SHD3_k127_1514942_8 Prokaryotic cytochrome b561 K08354 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000006116 215.0
SHD3_k127_1514942_9 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000001303 222.0
SHD3_k127_1519550_0 Belongs to the UbiD family K16874 - - 0.0000000000000006298 84.0
SHD3_k127_1519550_1 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.000000000002236 72.0
SHD3_k127_1519550_2 Polysaccharide lyase - - - 0.000008862 57.0
SHD3_k127_1554649_0 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 464.0
SHD3_k127_1554649_1 PFAM aldo keto reductase K05882 - 1.1.1.91 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 414.0
SHD3_k127_1554649_2 Family membership K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000001014 226.0
SHD3_k127_1554649_3 guanyl-nucleotide exchange factor activity - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000002515 133.0
SHD3_k127_1567033_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 8.531e-247 792.0
SHD3_k127_1567033_1 Cytochrome bd-type quinol oxidase subunit 1 K00425 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 550.0
SHD3_k127_1567033_2 Cytochrome d ubiquinol oxidase, subunit II K00426 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016679,GO:0016682,GO:0019646,GO:0020037,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0070069,GO:0071944,GO:0097159,GO:1901363 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003464 404.0
SHD3_k127_1567033_3 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000944 380.0
SHD3_k127_1567033_4 Domain present in PSD-95, Dlg, and ZO-1/2. K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 352.0
SHD3_k127_1567033_5 Involved in the TonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005533 329.0
SHD3_k127_1567033_6 cheY-homologous receiver domain - - - 0.00004649 48.0
SHD3_k127_1570741_0 ABC transporter, ATP-binding protein - - - 4.909e-200 645.0
SHD3_k127_1570741_1 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004049 301.0
SHD3_k127_1570741_10 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0000000000000151 87.0
SHD3_k127_1570741_2 Cytochrome c K00406,K03889,K17222,K19713 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005507,GO:0005515,GO:0005575,GO:0005623,GO:0006091,GO:0006464,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0016667,GO:0016669,GO:0016740,GO:0016782,GO:0016783,GO:0018192,GO:0018193,GO:0018198,GO:0018307,GO:0019417,GO:0019538,GO:0020037,GO:0022900,GO:0036211,GO:0042597,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046872,GO:0046906,GO:0046914,GO:0046982,GO:0046983,GO:0048037,GO:0055114,GO:0071704,GO:0097159,GO:0098822,GO:1901363,GO:1901564 1.8.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000001268 273.0
SHD3_k127_1570741_3 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000007262 225.0
SHD3_k127_1570741_4 Belongs to the glycosyl hydrolase 43 family K06113 - 3.2.1.99 0.000000000000000000000000000000000000000000000000000000000000004883 225.0
SHD3_k127_1570741_5 Uncharacterized protein conserved in bacteria (DUF2239) K09965 - - 0.0000000000000000000000000000000000000000000000000000000001528 214.0
SHD3_k127_1570741_6 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.0000000000000000000000000000000000000000000000002632 181.0
SHD3_k127_1570741_7 Low affinity iron permease - - - 0.0000000000000000000000000000000000000000000004442 175.0
SHD3_k127_1570741_8 Stigma-specific protein, Stig1 - - - 0.0000000000000000000000612 113.0
SHD3_k127_1576033_0 Domain of unknown function (DUF4175) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006546 514.0
SHD3_k127_1576033_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006501 372.0
SHD3_k127_1576033_2 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007653 272.0
SHD3_k127_1576033_3 - - - - 0.000000000000000000000000000000000000000000005377 172.0
SHD3_k127_158634_0 Protein of unknown function (DUF3237) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004053 490.0
SHD3_k127_158634_1 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009746 473.0
SHD3_k127_158634_10 - - - - 0.0000007138 53.0
SHD3_k127_158634_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004793 452.0
SHD3_k127_158634_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005843 410.0
SHD3_k127_158634_4 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000107 301.0
SHD3_k127_158634_5 cog0421, spermidine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000001413 236.0
SHD3_k127_158634_6 FR47-like protein - - - 0.0000000000000000000000000000000000002129 162.0
SHD3_k127_158634_7 Glycine-rich RNA-binding protein - GO:0000166,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006355,GO:0006950,GO:0006970,GO:0007275,GO:0008144,GO:0008150,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009631,GO:0009651,GO:0009791,GO:0009845,GO:0009889,GO:0009890,GO:0009892,GO:0010035,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0034336,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043242,GO:0043244,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0060567,GO:0065007,GO:0080090,GO:0090351,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000004019 117.0
SHD3_k127_158634_8 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000004672 113.0
SHD3_k127_158634_9 Integral membrane sensor signal transduction histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.00000000003237 64.0
SHD3_k127_1597988_0 Esterase PHB depolymerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009416 429.0
SHD3_k127_1597988_1 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 417.0
SHD3_k127_1597988_3 associated with various cellular activities K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 346.0
SHD3_k127_1597988_4 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 342.0
SHD3_k127_1597988_5 protein homotetramerization - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005078 273.0
SHD3_k127_1597988_6 PFAM metal-dependent phosphohydrolase, HD sub domain K02030,K02103,K02529 - - 0.0000000000000000000000000000000000000004617 168.0
SHD3_k127_1597988_7 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000644 128.0
SHD3_k127_1597988_8 Rhodanese Homology Domain - - - 0.0005063 50.0
SHD3_k127_162338_0 repeat protein - - - 0.0 4269.0
SHD3_k127_162338_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.278e-264 835.0
SHD3_k127_162338_2 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 410.0
SHD3_k127_162338_3 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003917 290.0
SHD3_k127_162338_4 Forkhead associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002158 260.0
SHD3_k127_162338_5 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.0000000000000000000000000000000000000000000000000000002583 196.0
SHD3_k127_162338_6 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000002356 141.0
SHD3_k127_1629536_0 DEAD DEAH box K03724 - - 0.0 1660.0
SHD3_k127_1629536_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 330.0
SHD3_k127_1629536_2 cAMP biosynthetic process K18672 - 2.7.7.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 318.0
SHD3_k127_1629536_3 drug transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001698 287.0
SHD3_k127_1629536_4 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000001063 224.0
SHD3_k127_1629536_5 DNA-binding regulatory protein K03088 - - 0.00000000000000000000000000000000000002122 155.0
SHD3_k127_1629536_6 Belongs to the SUA5 family K07566 - 2.7.7.87 0.0000000000000000000000000002946 116.0
SHD3_k127_1641432_0 Tetratricopeptide repeats - - - 2.521e-264 885.0
SHD3_k127_1641432_1 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 368.0
SHD3_k127_1641432_2 phosphoserine phosphatase activity K01768,K07315,K16922 - 3.1.3.3,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 322.0
SHD3_k127_1641432_3 Pfam:RRM_6 - - - 0.000000000000000000000000000000003124 134.0
SHD3_k127_1641432_4 Protein of unknown function (DUF1573) - - - 0.00000000000000004508 94.0
SHD3_k127_1656069_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 477.0
SHD3_k127_1656069_10 Outer membrane protein (OmpH-like) K06142 - - 0.000000000000000000000000000000000000000000000000004558 188.0
SHD3_k127_1656069_11 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.0000000000000000000000000000000000000009909 160.0
SHD3_k127_1656069_2 Cyclic nucleotide-monophosphate binding domain K04739 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 367.0
SHD3_k127_1656069_3 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007797 341.0
SHD3_k127_1656069_4 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 303.0
SHD3_k127_1656069_5 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003243 309.0
SHD3_k127_1656069_6 Family membership K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001598 294.0
SHD3_k127_1656069_7 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 GO:0003674,GO:0003824,GO:0004595,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000000000001703 234.0
SHD3_k127_1656069_8 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000002758 235.0
SHD3_k127_1656069_9 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000000000000000000006064 206.0
SHD3_k127_1659245_0 Beta-xylanase K01181 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004481 288.0
SHD3_k127_1660690_0 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006225 508.0
SHD3_k127_1660690_1 - - - - 0.000000000000000000000000000000000000000000000000000002074 207.0
SHD3_k127_1660690_2 Belongs to the SUA5 family K07566 - 2.7.7.87 0.00000000000000000000000000000000000001258 147.0
SHD3_k127_1660919_0 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003795 502.0
SHD3_k127_1660919_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 372.0
SHD3_k127_1675914_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 1.687e-306 951.0
SHD3_k127_1675914_1 Creatinase/Prolidase N-terminal domain K01262,K01271 - 3.4.11.9,3.4.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003209 505.0
SHD3_k127_1675914_10 Fe-S-cluster oxidoreductase K06940 - - 0.00000000000000000005212 98.0
SHD3_k127_1675914_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 507.0
SHD3_k127_1675914_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 457.0
SHD3_k127_1675914_4 major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 453.0
SHD3_k127_1675914_5 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 394.0
SHD3_k127_1675914_6 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007827 326.0
SHD3_k127_1675914_7 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002444 270.0
SHD3_k127_1675914_8 Cellulose-binding family ii - - - 0.000000000000000000000000000001348 132.0
SHD3_k127_1675914_9 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000002827 113.0
SHD3_k127_1687225_0 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003528 427.0
SHD3_k127_1687225_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007916 279.0
SHD3_k127_1687225_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.0000000000000000000000000000000000000000003418 160.0
SHD3_k127_1687225_3 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000005187 121.0
SHD3_k127_1687225_4 Beta-L-arabinofuranosidase, GH127 - - - 0.000000000000000000000004232 119.0
SHD3_k127_1687225_5 FecR protein - - - 0.000000000000001374 89.0
SHD3_k127_169731_1 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002125 431.0
SHD3_k127_169731_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003573 396.0
SHD3_k127_169731_3 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 374.0
SHD3_k127_169731_4 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 324.0
SHD3_k127_169731_5 PilZ domain K02676 - - 0.0000000000000000000000000000000000000000000004823 177.0
SHD3_k127_169731_6 - - - - 0.00000000000000000000000000000000000009313 153.0
SHD3_k127_169731_7 phosphoserine phosphatase activity - - - 0.0000000000000000000000002228 124.0
SHD3_k127_1713917_0 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 374.0
SHD3_k127_1713917_1 LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000007273 229.0
SHD3_k127_1713917_2 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000006524 157.0
SHD3_k127_1713917_3 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000001572 123.0
SHD3_k127_1726249_0 Predicted permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 296.0
SHD3_k127_1726249_1 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.00000000000000000000000000000186 129.0
SHD3_k127_1726249_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000003437 111.0
SHD3_k127_1726249_3 PilZ domain - - - 0.00000000000000143 85.0
SHD3_k127_1730112_0 Alpha-L-arabinofuranosidase B, catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 387.0
SHD3_k127_1730112_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000004856 221.0
SHD3_k127_1730112_2 Glycosyl hydrolases family 11 K18454 GO:0003674,GO:0003824,GO:0004099,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0017144,GO:0019213,GO:0042737,GO:0043170,GO:0044237,GO:0044248,GO:0046348,GO:0071704,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.105 0.0000000000000000000000002787 116.0
SHD3_k127_1730112_3 peptidase activity, acting on L-amino acid peptides - - - 0.00000000000000000000005872 107.0
SHD3_k127_1730112_4 Belongs to the glycosyl hydrolase 43 family K15921 - 3.2.1.55 0.0000004037 55.0
SHD3_k127_1734271_0 4Fe-4S dicluster domain K00184 - - 3.346e-297 939.0
SHD3_k127_1734271_1 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009872 608.0
SHD3_k127_1734271_10 Protein of unknown function (DUF3341) - - - 0.0000000000000000000000000000000000000000000000000000001844 203.0
SHD3_k127_1734271_11 4Fe-4S single cluster domain K06139 - - 0.000000000000000000000000000000000000000000000000000007632 210.0
SHD3_k127_1734271_12 protein containing double-stranded beta helix domain - - - 0.0000000000000000000000000000000000000000000002616 173.0
SHD3_k127_1734271_13 Cytochrome c K19713 - 1.8.2.2 0.00000000000000000000000000000000000000004437 164.0
SHD3_k127_1734271_14 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000001519 122.0
SHD3_k127_1734271_17 - - - - 0.00000000000000000002966 94.0
SHD3_k127_1734271_18 Acyltransferase family - - - 0.00000000003097 67.0
SHD3_k127_1734271_19 Acyltransferase family - - - 0.0000000002838 66.0
SHD3_k127_1734271_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 506.0
SHD3_k127_1734271_21 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.00000001941 61.0
SHD3_k127_1734271_3 ErfK ybiS ycfS ynhG family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 449.0
SHD3_k127_1734271_4 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 408.0
SHD3_k127_1734271_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005779 306.0
SHD3_k127_1734271_6 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006581 294.0
SHD3_k127_1734271_7 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000002505 242.0
SHD3_k127_1734271_8 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000008018 231.0
SHD3_k127_1734271_9 Pyrroloquinoline quinone biosynthesis protein E - - - 0.00000000000000000000000000000000000000000000000000000000000000132 233.0
SHD3_k127_1734482_0 Cellulose biosynthesis protein BcsQ K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000686 444.0
SHD3_k127_1734482_1 - - - - 0.0000000000000000000000000001097 128.0
SHD3_k127_1734482_2 Major Facilitator Superfamily - - - 0.00000000000000000001344 101.0
SHD3_k127_1734482_3 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000009644 66.0
SHD3_k127_1738775_0 AcrB/AcrD/AcrF family - - - 2.882e-194 651.0
SHD3_k127_1738775_1 AcrB/AcrD/AcrF family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008435 642.0
SHD3_k127_1738775_2 Response regulator receiver K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 437.0
SHD3_k127_1738775_3 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004096 259.0
SHD3_k127_1738775_4 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000003783 158.0
SHD3_k127_1738775_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000002284 88.0
SHD3_k127_1738775_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000006227 85.0
SHD3_k127_1738775_8 Flagellar Motor Protein K02557 - - 0.00002748 55.0
SHD3_k127_1741477_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01874 - 6.1.1.10 2.57e-322 995.0
SHD3_k127_1741477_1 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 383.0
SHD3_k127_1741477_2 MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000001239 201.0
SHD3_k127_1741477_3 UMP catabolic process - - - 0.0000000000000000000000000000000000002343 146.0
SHD3_k127_1741477_4 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000002588 144.0
SHD3_k127_1741477_5 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus K04760 - - 0.0000000000000000000000000003722 116.0
SHD3_k127_1741477_6 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.000002733 55.0
SHD3_k127_1746831_0 Belongs to the ompA family K03640 - - 0.00000000000000000000000331 109.0
SHD3_k127_1746831_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.000000000000007659 81.0
SHD3_k127_1746831_2 Outer membrane efflux protein - - - 0.0000005359 62.0
SHD3_k127_1746831_3 - - - - 0.00006105 54.0
SHD3_k127_1757619_0 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005447 527.0
SHD3_k127_1757619_1 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 456.0
SHD3_k127_1757619_10 cheY-homologous receiver domain - - - 0.0000000000000000000000000000005453 129.0
SHD3_k127_1757619_11 Domain of unknown function (DUF697) K03595 - - 0.0000000000000000000000000006351 126.0
SHD3_k127_1757619_12 Membrane-associated phospholipid phosphatase K19302 - 3.6.1.27 0.0000000000002265 78.0
SHD3_k127_1757619_13 - - - - 0.00006128 51.0
SHD3_k127_1757619_14 EF hand - - - 0.0002215 51.0
SHD3_k127_1757619_3 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003214 291.0
SHD3_k127_1757619_4 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009376 280.0
SHD3_k127_1757619_5 PFAM Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000599 232.0
SHD3_k127_1757619_6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000001058 246.0
SHD3_k127_1757619_7 protein conserved in cyanobacteria - - - 0.00000000000000000000000000000000000000000000000000000000006419 212.0
SHD3_k127_1757619_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000003209 166.0
SHD3_k127_1757619_9 Transmembrane secretion effector - - - 0.00000000000000000000000000000001639 137.0
SHD3_k127_176714_0 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004132 301.0
SHD3_k127_176714_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059,K00216,K07124 - 1.1.1.100,1.3.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000001733 267.0
SHD3_k127_176714_2 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001364 239.0
SHD3_k127_176714_3 Oxidoreductase family, NAD-binding Rossmann fold K19181 - 1.1.1.292 0.00000001484 57.0
SHD3_k127_1783623_0 Belongs to the glycosyl hydrolase 1 family K05350 - 3.2.1.21 1.554e-220 692.0
SHD3_k127_1783623_1 Natural resistance-associated macrophage protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003351 496.0
SHD3_k127_1783623_2 Belongs to the LarC family K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008102 463.0
SHD3_k127_1783623_3 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 GO:0001505,GO:0003674,GO:0003824,GO:0004375,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016491,GO:0016638,GO:0016642,GO:0017144,GO:0019464,GO:0019752,GO:0032991,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902494,GO:1990204 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 387.0
SHD3_k127_1783623_4 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007626 273.0
SHD3_k127_1783623_5 Glyoxalase bleomycin resistance protein dioxygenase K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000000004141 213.0
SHD3_k127_1783623_6 MgtE intracellular N domain K02000,K05847 - 3.6.3.32 0.0000000000000000000000000000000000000000000000000000000000008566 226.0
SHD3_k127_1783623_8 glutamate dehydrogenase [NAD(P)+] activity K00262 GO:0005575,GO:0005623,GO:0009986,GO:0044464 1.4.1.4 0.0000000007051 59.0
SHD3_k127_1796864_0 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.0000000000003696 79.0
SHD3_k127_1796864_1 Major facilitator Superfamily K03292 - - 0.00000003385 57.0
SHD3_k127_1812859_0 peptidase S1 and S6 chymotrypsin Hap - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001068 277.0
SHD3_k127_1812859_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000708 263.0
SHD3_k127_1812859_2 PDZ DHR GLGF domain protein - - - 0.00000000000000000000000000000000000000000000003606 182.0
SHD3_k127_1812859_3 protein trimerization - - - 0.000000000000000000000000000000000007167 151.0
SHD3_k127_1812859_4 Cellulase (glycosyl hydrolase family 5) K01218 - 3.2.1.78 0.00000000000000000000000000000000006187 151.0
SHD3_k127_1812859_5 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000015 141.0
SHD3_k127_1812859_6 regulation of canonical Wnt signaling pathway involved in osteoblast differentiation - - - 0.0000008472 51.0
SHD3_k127_1812859_7 Astacin (Peptidase family M12A) - - - 0.00001123 58.0
SHD3_k127_1818474_0 Endonuclease Exonuclease Phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 419.0
SHD3_k127_1818474_1 - - - - 0.0000000000000000000007157 107.0
SHD3_k127_1822754_0 protein involved in exopolysaccharide biosynthesis K16554 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 598.0
SHD3_k127_1822754_1 mannose metabolic process K01191 - 3.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009934 554.0
SHD3_k127_1822754_2 AhpC/TSA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001297 262.0
SHD3_k127_1822754_3 transferase activity, transferring glycosyl groups K00720 - 2.4.1.80 0.00000000000000000000000000000000000000000000000000000000000000000004026 247.0
SHD3_k127_1822754_4 Cytochrome C biogenesis protein K06196,K12267 - 1.8.4.11,1.8.4.12 0.0000000000000000000000000000000000000000000000000000009589 200.0
SHD3_k127_1822754_5 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.000000000000000000000000000000000000000000000000000004576 203.0
SHD3_k127_1822754_6 negative regulation of translational initiation - - - 0.000000000006202 75.0
SHD3_k127_1824310_0 Alpha amylase, catalytic domain - - - 7.167e-244 766.0
SHD3_k127_1824310_1 Belongs to the glycosyl hydrolase 31 family K01811 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010410,GO:0010411,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044419,GO:0051704,GO:0071554,GO:0071704,GO:0085030,GO:1901575,GO:2000895,GO:2000899 3.2.1.177 3.391e-242 778.0
SHD3_k127_1824310_10 repeat protein - - - 0.000000000000000000000000000000000000000001888 169.0
SHD3_k127_1824310_11 small periplasmic lipoprotein - - - 0.000000000000000000000003853 111.0
SHD3_k127_1824310_12 Ribbon-helix-helix domain - - - 0.0000000000000000000006219 98.0
SHD3_k127_1824310_13 - - - - 0.000000000002692 75.0
SHD3_k127_1824310_2 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 514.0
SHD3_k127_1824310_3 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K01835,K01840 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 475.0
SHD3_k127_1824310_4 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004513 466.0
SHD3_k127_1824310_5 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008759 401.0
SHD3_k127_1824310_6 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 409.0
SHD3_k127_1824310_7 MazG nucleotide pyrophosphohydrolase domain K02499,K04765 - 3.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 365.0
SHD3_k127_1824310_8 C2 domain K06399 - 3.4.21.116 0.0000000000000000000000000000000000000000000000000000000002866 213.0
SHD3_k127_1824310_9 Belongs to the GcvT family K06980 - - 0.0000000000000000000000000000000000000000000000000009799 199.0
SHD3_k127_183124_0 COG0210 Superfamily I DNA and RNA K03657 - 3.6.4.12 1.124e-216 693.0
SHD3_k127_183124_1 Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) K01661,K07536 - 4.1.3.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009399 473.0
SHD3_k127_183124_10 Belongs to the GbsR family - - - 0.00000000000000000000000000000000000000006259 161.0
SHD3_k127_183124_11 Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) K02551 - 2.2.1.9 0.0000000000000000005079 93.0
SHD3_k127_183124_12 PFAM Pentapeptide repeats (8 copies) - - - 0.00003864 50.0
SHD3_k127_183124_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 355.0
SHD3_k127_183124_3 Belongs to the MenA family. Type 1 subfamily K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 324.0
SHD3_k127_183124_4 COG0493 NADPH-dependent glutamate synthase beta chain and related K00528 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 326.0
SHD3_k127_183124_5 Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) K02551 - 2.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 325.0
SHD3_k127_183124_6 AMP-binding enzyme C-terminal domain K01911 - 6.2.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006255 312.0
SHD3_k127_183124_7 chorismate binding enzyme K01851,K02361,K02552 - 5.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000002303 285.0
SHD3_k127_183124_8 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000001591 254.0
SHD3_k127_183124_9 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.00000000000000000000000000000000000000000000000000236 196.0
SHD3_k127_1852402_0 serine-type endopeptidase activity - - - 0.00000000000000000000000000000000000000000000000519 189.0
SHD3_k127_1852402_1 Integrase core domain - - - 0.0000000000000000000002352 100.0
SHD3_k127_1852402_2 TIGRFAM Por secretion system C-terminal sorting domain - - - 0.00000000000000964 88.0
SHD3_k127_1853342_0 Transporter major facilitator family protein K08177 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 510.0
SHD3_k127_1853342_1 Poly3-Hydroxybutyrate Depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 387.0
SHD3_k127_1853342_10 Alpha-L-arabinofuranosidase B (ABFB) domain K20844 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005975,GO:0005976,GO:0005996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010393,GO:0016052,GO:0016787,GO:0016798,GO:0017144,GO:0019321,GO:0019566,GO:0031221,GO:0042737,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044464,GO:0045488,GO:0045490,GO:0046556,GO:0071704,GO:1901575 3.2.1.55 0.000000000001289 68.0
SHD3_k127_1853342_2 peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005636 343.0
SHD3_k127_1853342_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007894 325.0
SHD3_k127_1853342_4 iron ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001456 273.0
SHD3_k127_1853342_5 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002754 265.0
SHD3_k127_1853342_6 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.000000000000000000000000000000000000000000000000000000000000000001658 231.0
SHD3_k127_1853342_8 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000004668 140.0
SHD3_k127_1853342_9 PFAM regulator of chromosome condensation, RCC1 - - - 0.000000000000000004119 98.0
SHD3_k127_1855187_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 4.222e-202 638.0
SHD3_k127_1855187_1 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008754 406.0
SHD3_k127_1855187_11 Transcriptional regulator - - - 0.000000007313 64.0
SHD3_k127_1855187_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 355.0
SHD3_k127_1855187_3 DnaJ molecular chaperone homology domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003237 300.0
SHD3_k127_1855187_4 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000000006927 200.0
SHD3_k127_1855187_5 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000000001406 205.0
SHD3_k127_1855187_8 peptidyl-prolyl cis-trans isomerase activity K02597,K03769,K03771 - 5.2.1.8 0.00000000000000000000000000000000004781 143.0
SHD3_k127_1855187_9 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.00000000000000000000000000005628 122.0
SHD3_k127_1862925_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1234.0
SHD3_k127_1862925_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 2.425e-239 743.0
SHD3_k127_1862925_2 Glycosyl hydrolase family 65, N-terminal domain K15923 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000448 591.0
SHD3_k127_1862925_3 elongation factor Tu domain 2 protein K02355 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000435 575.0
SHD3_k127_1862925_4 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004205 483.0
SHD3_k127_1862925_5 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009834 409.0
SHD3_k127_1862925_6 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 320.0
SHD3_k127_1862925_7 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 318.0
SHD3_k127_1862925_8 Chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004911 270.0
SHD3_k127_1862925_9 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000002132 225.0
SHD3_k127_1865085_0 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000000001253 118.0
SHD3_k127_1865085_1 - K08223 - - 0.000000000000000003275 97.0
SHD3_k127_1865085_2 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000002878 83.0
SHD3_k127_1865085_3 Domain of unknown function (DUF4410) - - - 0.0007889 49.0
SHD3_k127_188050_0 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001016 259.0
SHD3_k127_1880891_0 Glycosyl hydrolase family 10 K01181 - 3.2.1.8 2.825e-231 756.0
SHD3_k127_1880891_1 Family membership K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000052 370.0
SHD3_k127_1880891_2 OmpA family K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006817 260.0
SHD3_k127_1880891_3 - - - - 0.000000000000000000000000000000004173 132.0
SHD3_k127_1880891_4 Major Facilitator - - - 0.000000002478 64.0
SHD3_k127_1889174_0 Bacterial regulatory protein, Fis family K02584 - - 0.0 1060.0
SHD3_k127_1889174_1 Belongs to the methyltransferase superfamily K07444,K12297 - 2.1.1.173,2.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004655 408.0
SHD3_k127_1889174_2 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002494 258.0
SHD3_k127_1889174_3 Glycosyl hydrolases family 8 - - - 0.0000000000000000000000000000000000000000000000000000000002167 225.0
SHD3_k127_1889174_4 Peptidase family M54 - - - 0.00000000000000000000000000000000000000000000005327 182.0
SHD3_k127_1889174_5 - - - - 0.00000000000000000000000001818 120.0
SHD3_k127_1899469_0 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000000004887 184.0
SHD3_k127_1906358_0 Serine aminopeptidase, S33 K00433 - 1.11.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 497.0
SHD3_k127_1906358_1 NAD(P)H-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006359 412.0
SHD3_k127_1906358_10 Integrase core domain - - - 0.0000000000000004998 82.0
SHD3_k127_1906358_11 ADP-ribosylglycohydrolase - - - 0.000000000000003075 89.0
SHD3_k127_1906358_12 Peptidase family M23 - - - 0.000000000009497 77.0
SHD3_k127_1906358_13 - - - - 0.0000001628 63.0
SHD3_k127_1906358_14 Belongs to the 'phage' integrase family - - - 0.000008218 53.0
SHD3_k127_1906358_15 - - - - 0.0001078 53.0
SHD3_k127_1906358_2 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006377 311.0
SHD3_k127_1906358_3 DJ-1/PfpI family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 285.0
SHD3_k127_1906358_4 Transposase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001681 301.0
SHD3_k127_1906358_5 Histidine kinase K08082 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000005113 263.0
SHD3_k127_1906358_6 LytTr DNA-binding domain K02477,K07705 - - 0.00000000000000000000000000000000000000000000000000000003294 217.0
SHD3_k127_1906358_7 Protein of unknown function (DUF3237) - - - 0.00000000000000000000000000000000000000000002536 166.0
SHD3_k127_1906358_8 Protein of unknown function (DUF3237) - - - 0.0000000000000000000000000000008954 128.0
SHD3_k127_1906358_9 RNA polymerase sigma factor K03088 - - 0.000000000000000000001378 102.0
SHD3_k127_1914577_0 PFAM regulator of chromosome condensation, RCC1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 340.0
SHD3_k127_1914577_1 Regulator of chromosome condensation (RCC1) repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 315.0
SHD3_k127_1914577_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.000000000000000000000000000007404 136.0
SHD3_k127_1914577_3 Glycosyl hydrolases family 25 - - - 0.000000000000000000000000000008904 136.0
SHD3_k127_1914577_4 response to antibiotic - - - 0.0000000000000007758 83.0
SHD3_k127_1914577_5 - - - - 0.00000000000001169 80.0
SHD3_k127_1914577_6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000001002 76.0
SHD3_k127_1914577_7 Pkd domain containing protein - - - 0.0000000000001604 83.0
SHD3_k127_1920458_0 Acetyl-CoA carboxylase, central region - - - 0.0 1210.0
SHD3_k127_1920458_1 Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 345.0
SHD3_k127_1920458_2 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000009965 205.0
SHD3_k127_1920458_3 pfam ammecr1 K06990,K09141 - - 0.000000000000000000000000000000001712 137.0
SHD3_k127_1926081_0 Belongs to the glycosyl hydrolase family 6 K19355 - 3.2.1.78 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 383.0
SHD3_k127_192712_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 1.453e-262 839.0
SHD3_k127_192712_1 phosphoprotein phosphatase activity - - - 0.000000000000000000000000000000000000000000000000000005816 193.0
SHD3_k127_192712_2 Domain of unknown function (DUF4215) - - - 0.0000001813 63.0
SHD3_k127_1941507_0 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 1.257e-309 974.0
SHD3_k127_1941507_1 Phosphate transporter family K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 416.0
SHD3_k127_1941507_2 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000000000003194 233.0
SHD3_k127_1946028_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000003028 91.0
SHD3_k127_1946028_1 cellulase activity K01400 - 3.4.24.28 0.000000008542 70.0
SHD3_k127_1957484_0 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002898 442.0
SHD3_k127_1957484_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005744 262.0
SHD3_k127_1958041_0 ABC transporter K06147 - - 6.082e-221 706.0
SHD3_k127_1958041_1 DUF3160 - - - 3.032e-209 674.0
SHD3_k127_1958041_2 - - - - 0.00000000291 61.0
SHD3_k127_1958041_3 NAD(P)H-binding - - - 0.000005802 53.0
SHD3_k127_19687_0 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 472.0
SHD3_k127_19687_1 - - - - 0.000000000000000000000000000000000000000000000000002655 188.0
SHD3_k127_19687_3 Domain of unknown function (DUF4349) - - - 0.00000000000000000001275 102.0
SHD3_k127_19687_5 - - - - 0.0000000001428 74.0
SHD3_k127_1972866_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 590.0
SHD3_k127_1972866_1 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 471.0
SHD3_k127_1972866_2 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 305.0
SHD3_k127_1972866_3 - - - - 0.00000000000000000000002046 115.0
SHD3_k127_1972866_4 - - - - 0.00000000000000000000002622 102.0
SHD3_k127_1972866_5 FHA domain - - - 0.000000000000000000002244 103.0
SHD3_k127_1972866_6 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins - - - 0.000000000000000001775 92.0
SHD3_k127_1972866_7 - - - - 0.0000000000002009 77.0
SHD3_k127_1979573_0 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 429.0
SHD3_k127_1983399_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003071 577.0
SHD3_k127_1983399_1 NLP P60 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 443.0
SHD3_k127_1983399_2 PFAM ATP adenylyltransferase K00988 - 2.7.7.53 0.0000000000000000000000000000000000000000000000000000000000000000000000004116 256.0
SHD3_k127_1983399_3 Bacterial capsule synthesis protein PGA_cap K01929,K07282 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000002722 233.0
SHD3_k127_1983399_4 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000000001863 229.0
SHD3_k127_1983399_5 COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) K00917 - 2.7.1.144 0.000000000000000000000000000000000000000000000000000006548 203.0
SHD3_k127_1983399_6 Smr domain - - - 0.0000000000003568 70.0
SHD3_k127_1996071_0 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004805 356.0
SHD3_k127_1996071_1 glycosyl transferase family 2 K00721,K20534 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000003777 228.0
SHD3_k127_1996071_2 domain protein - - - 0.00000000000000000000000000000001018 147.0
SHD3_k127_1996071_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000004368 135.0
SHD3_k127_1996071_4 - - - - 0.000000000000000000000009622 117.0
SHD3_k127_1996071_5 Lysylphosphatidylglycerol synthase TM region - - - 0.00000000000000001617 96.0
SHD3_k127_2003567_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004831 615.0
SHD3_k127_2003567_2 PFAM FeoA family protein K04758 - - 0.0000000000000004892 80.0
SHD3_k127_2003567_3 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins K21218 - - 0.0000001649 64.0
SHD3_k127_2003567_4 Domain of unknown function (DUF4388) - - - 0.00002067 55.0
SHD3_k127_2014240_0 DNA helicase K03657 - 3.6.4.12 7.539e-212 683.0
SHD3_k127_2014240_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 492.0
SHD3_k127_2014240_2 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008019 327.0
SHD3_k127_2014240_3 Hydrolase, TatD family K03424 - - 0.0000000000000000000000000000000000000000221 162.0
SHD3_k127_2014240_4 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000008403 151.0
SHD3_k127_2014240_5 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000194 154.0
SHD3_k127_2014240_6 - - - - 0.00000000000000000003504 101.0
SHD3_k127_2014240_7 Acetyltransferase (GNAT) domain - - - 0.000000000001512 79.0
SHD3_k127_2017027_0 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 449.0
SHD3_k127_2017027_1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 304.0
SHD3_k127_2017027_2 Glycosyl hydrolase family 26 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003337 262.0
SHD3_k127_2017027_3 Glycosyl hydrolase family 26 - - - 0.00000000000000000000000000001697 118.0
SHD3_k127_2017027_4 Domain of unknown function (DU1801) - - - 0.0000000001204 69.0
SHD3_k127_2020667_0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003595 535.0
SHD3_k127_2020667_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 406.0
SHD3_k127_2020667_2 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 326.0
SHD3_k127_2020667_3 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 294.0
SHD3_k127_2020667_4 DTW - - - 0.00000000000000000000000000000000000000000002144 173.0
SHD3_k127_2020667_5 subunit D of antiporter complex involved in resistance to high concentrations of Na , K , Li and or alkali K05568 GO:0003674,GO:0005215,GO:0005451,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015081,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015385,GO:0015491,GO:0015672,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0035725,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0098655,GO:0098660,GO:0098662,GO:0099516,GO:1902600 - 0.00000000000000000000000000000000000000000003066 169.0
SHD3_k127_2020667_6 protein conserved in bacteria K09922 - - 0.000000000000000000000000000000000002799 145.0
SHD3_k127_2020667_7 regulation of canonical Wnt signaling pathway involved in osteoblast differentiation K01691,K13539 - - 0.000000008105 67.0
SHD3_k127_2027241_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 455.0
SHD3_k127_2027241_1 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 0.00000000000000000000000000000000000000000000000006747 202.0
SHD3_k127_2027241_2 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000005289 146.0
SHD3_k127_2035234_0 Transcriptional regulator - - - 1.295e-200 643.0
SHD3_k127_2035234_1 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 518.0
SHD3_k127_2035234_11 - - - - 0.000000000000000000000000000000000000000000002233 184.0
SHD3_k127_2035234_12 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 3.4.21.88 0.00000000000000000000000000000000000000000003919 161.0
SHD3_k127_2035234_14 Predicted membrane protein (DUF2085) - - - 0.0000000000000000002832 94.0
SHD3_k127_2035234_15 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.0000000000000001363 93.0
SHD3_k127_2035234_2 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 468.0
SHD3_k127_2035234_3 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004724 465.0
SHD3_k127_2035234_4 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004086 426.0
SHD3_k127_2035234_7 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000898 266.0
SHD3_k127_2035234_9 COG0524 Sugar kinases, ribokinase K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000299 226.0
SHD3_k127_2043644_0 Forkhead associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 363.0
SHD3_k127_2043644_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000001103 181.0
SHD3_k127_2043644_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000562 171.0
SHD3_k127_2043644_3 DDE superfamily endonuclease - - - 0.000000000000005283 81.0
SHD3_k127_2043644_4 peptidyl-tyrosine sulfation - - - 0.000958 45.0
SHD3_k127_2051111_0 Bacterial regulatory protein, Fis family K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 458.0
SHD3_k127_2051111_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001863 259.0
SHD3_k127_2051111_2 long-chain-acyl-CoA dehydrogenase activity K09479 GO:0000038,GO:0000062,GO:0000166,GO:0001659,GO:0003674,GO:0003824,GO:0003995,GO:0004466,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009266,GO:0009295,GO:0009409,GO:0009628,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010565,GO:0015980,GO:0016020,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0017076,GO:0017099,GO:0019216,GO:0019217,GO:0019218,GO:0019222,GO:0019395,GO:0019752,GO:0019866,GO:0023052,GO:0030154,GO:0030258,GO:0030554,GO:0030855,GO:0030968,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033218,GO:0033539,GO:0033554,GO:0034440,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036094,GO:0036498,GO:0042221,GO:0042304,GO:0042592,GO:0042645,GO:0042760,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046320,GO:0046322,GO:0046395,GO:0046890,GO:0048037,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048871,GO:0050660,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051716,GO:0055114,GO:0060429,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071310,GO:0071704,GO:0072329,GO:0080090,GO:0090181,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901567,GO:1901575,GO:1901681 1.3.8.9 0.0000000000000000000000000000000000000000000000000000000000000000000198 254.0
SHD3_k127_2051111_3 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000004426 197.0
SHD3_k127_2051111_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000001973 53.0
SHD3_k127_2075025_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 489.0
SHD3_k127_2075025_1 Glycosyl hydrolases family 8 K15531 - 3.2.1.156 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003578 450.0
SHD3_k127_2075025_2 SMART alpha amylase, catalytic sub domain K01176,K01182 - 3.2.1.1,3.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005198 346.0
SHD3_k127_2075025_3 PFAM Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000001626 248.0
SHD3_k127_2075025_4 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000002116 227.0
SHD3_k127_2075025_5 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000004319 228.0
SHD3_k127_2075025_6 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000002296 221.0
SHD3_k127_2075025_8 SNARE associated Golgi protein - - - 0.000000000000000000000009405 108.0
SHD3_k127_2083278_0 succinyl-diaminopimelate desuccinylase activity K01295 - 3.4.17.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 401.0
SHD3_k127_2083278_1 arginine N-succinyltransferase K00673 - 2.3.1.109 0.000000000000000000000000000000000000000000000000000000000000000000000000004368 265.0
SHD3_k127_2083278_2 - - - - 0.0000000000001202 81.0
SHD3_k127_2083278_4 Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate - - - 0.000008012 50.0
SHD3_k127_2084541_0 Sulfatase - - - 6.537e-273 869.0
SHD3_k127_2084541_1 PQQ enzyme repeat K17713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 512.0
SHD3_k127_2084541_2 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 359.0
SHD3_k127_2084541_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000003622 151.0
SHD3_k127_2085621_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004084 474.0
SHD3_k127_2085621_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 423.0
SHD3_k127_2085621_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K05580 - 1.6.5.3 0.00000000000000000000000000000000000000001147 161.0
SHD3_k127_2085621_3 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000002875 59.0
SHD3_k127_2093116_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004881 305.0
SHD3_k127_2093116_1 Spore coat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001572 280.0
SHD3_k127_2093116_11 FecR protein - - - 0.000000000001409 81.0
SHD3_k127_2093116_2 OmpA family - - - 0.0000000000000000000000000000000000000000000000458 180.0
SHD3_k127_2093116_4 oxidoreductase activity K07114 - - 0.00000000000000000000000000000000000000000001566 178.0
SHD3_k127_2093116_6 secreted hydrolase - - - 0.0000000000000000000000000000000000000000002925 171.0
SHD3_k127_2093116_7 - - - - 0.0000000000000000000000000000000000001084 157.0
SHD3_k127_2093116_8 xyloglucan:xyloglucosyl transferase activity - - - 0.00000000000000000001768 93.0
SHD3_k127_2093116_9 belongs to the sigma-70 factor family, ECF subfamily K03088 - - 0.0000000000000008461 85.0
SHD3_k127_209341_0 - - - - 0.00000000000000000000000000000000001205 142.0
SHD3_k127_209341_1 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000554 137.0
SHD3_k127_209341_2 penicillin binding K01286 - 3.4.16.4 0.000000000000000000000000006886 123.0
SHD3_k127_209341_3 - - - - 0.000000000000000000000001799 108.0
SHD3_k127_209341_4 PFAM IstB domain protein ATP-binding protein - - - 0.000000000000000001711 85.0
SHD3_k127_209341_5 - - - - 0.000000000001033 71.0
SHD3_k127_209341_6 sequence-specific DNA binding - - - 0.0002964 44.0
SHD3_k127_2105751_0 Belongs to the ClpA ClpB family K03694 - - 1.055e-265 839.0
SHD3_k127_2105751_1 response regulator K07713 - - 5.801e-214 674.0
SHD3_k127_2105751_2 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001266 271.0
SHD3_k127_2105751_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000002657 248.0
SHD3_k127_2105751_5 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000000000000000002922 181.0
SHD3_k127_2105751_6 - - - - 0.000000000000000000000000000000000002023 145.0
SHD3_k127_2105751_7 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.000000000000000000000000000000000005314 139.0
SHD3_k127_2105751_8 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000000000000003357 123.0
SHD3_k127_2111918_0 PFAM Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004312 357.0
SHD3_k127_2111918_1 Aminotransferase K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 339.0
SHD3_k127_2111918_2 Sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001847 276.0
SHD3_k127_2111918_3 Serine carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000001348 220.0
SHD3_k127_2111918_4 Transcriptional regulator K02624,K13641 - - 0.000000000000000000000000000000000000000000001448 175.0
SHD3_k127_2111918_5 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000001975 136.0
SHD3_k127_2111918_6 guanine deglycation, methylglyoxal removal K03152 - 3.5.1.124 0.0000000000000000006303 89.0
SHD3_k127_2112543_0 Domain of unknown function (DUF4215) - - - 1.002e-249 822.0
SHD3_k127_2112543_1 PIN domain - - - 0.00000000000000000000000000000007551 128.0
SHD3_k127_2112543_2 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.0000000000000000000003033 100.0
SHD3_k127_2112543_3 Protein of unknown function (DUF1566) - - - 0.000000000000000000001276 97.0
SHD3_k127_2112543_4 Uvrd rep helicase K03657 - 3.6.4.12 0.000001831 56.0
SHD3_k127_215248_0 Carboxypeptidase regulatory-like domain - - - 5.218e-204 674.0
SHD3_k127_215248_1 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 317.0
SHD3_k127_215248_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.000000000000000000000000000000000000000000000000000003165 217.0
SHD3_k127_215248_3 histidine kinase dimerisation and phosphoacceptor region - - - 0.00000000000000000000000000000000000000004734 167.0
SHD3_k127_215248_5 COG0457 FOG TPR repeat - - - 0.0000002228 64.0
SHD3_k127_2157111_0 von Willebrand factor type A domain - - - 0.0 1115.0
SHD3_k127_2157111_1 Aerotolerance regulator N-terminal - - - 1.878e-231 734.0
SHD3_k127_2157111_2 Von Willebrand factor type A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 458.0
SHD3_k127_2157111_3 glutamate--cysteine ligase K01919 - 6.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 420.0
SHD3_k127_2157111_4 Phosphomannose isomerase type I K01809,K01840 - 5.3.1.8,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 407.0
SHD3_k127_2157111_5 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 387.0
SHD3_k127_2157111_6 HNH endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000001126 236.0
SHD3_k127_2157111_7 homocysteine K00547 - 2.1.1.10 0.0000000000000000000000000000000000000000000000004913 186.0
SHD3_k127_2157111_8 von Willebrand factor type A domain - - - 0.0000000002934 70.0
SHD3_k127_2157111_9 Protein of unknown function (DUF3024) - - - 0.0000000103 60.0
SHD3_k127_2170421_0 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005411 320.0
SHD3_k127_2170421_1 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001894 233.0
SHD3_k127_2170421_3 Hydrolase K20866 - 3.1.3.10 0.00000000000000001263 91.0
SHD3_k127_2170421_4 PIN domain - - - 0.00000000000000919 79.0
SHD3_k127_2170421_5 serine threonine protein kinase - - - 0.0000000000178 77.0
SHD3_k127_2170421_6 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.00000000002089 68.0
SHD3_k127_2178112_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004226 495.0
SHD3_k127_2178112_1 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 498.0
SHD3_k127_2178112_10 histone H2A K63-linked ubiquitination - - - 0.00000000000000000000000001212 120.0
SHD3_k127_2178112_2 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004803 471.0
SHD3_k127_2178112_3 peptidase inhibitor activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 326.0
SHD3_k127_2178112_4 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 302.0
SHD3_k127_2178112_5 deaminase K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000000000000000000001623 226.0
SHD3_k127_2178112_6 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000003236 230.0
SHD3_k127_2178112_9 DREV methyltransferase K18328 - - 0.0000000000000000000000000000000004876 145.0
SHD3_k127_2178685_0 FeS assembly protein SufB K09014 - - 1.18e-232 727.0
SHD3_k127_2178685_1 DeoC/LacD family aldolase K11645 GO:0003674,GO:0003824,GO:0004332,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016829,GO:0016830,GO:0016832,GO:0042802,GO:0044424,GO:0044444,GO:0044464 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003503 527.0
SHD3_k127_2178685_2 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007754 509.0
SHD3_k127_2178685_3 FeS assembly ATPase SufC K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 342.0
SHD3_k127_2178685_4 FeS assembly protein SufD K09015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003878 282.0
SHD3_k127_2178685_5 TIGRFAM SUF system FeS assembly protein, NifU family K04488 - - 0.0000000000000000000000000000000000000009908 152.0
SHD3_k127_2178685_6 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000000000001507 147.0
SHD3_k127_2178685_7 Pfam:DUF59 - - - 0.00000000000000000000000000000000008258 139.0
SHD3_k127_2178685_8 transcriptional regulator, Rrf2 family - - - 0.00000000000000000000000000004725 126.0
SHD3_k127_2178685_9 - - - - 0.00000000000000000000000006179 119.0
SHD3_k127_2181008_1 protein trimerization - - - 0.0000000000000000000000000005449 130.0
SHD3_k127_2181008_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000005406 108.0
SHD3_k127_2181008_3 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000003664 100.0
SHD3_k127_2181597_0 phospholipid glycerol acyltransferase - - - 5.418e-281 892.0
SHD3_k127_2181597_1 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 540.0
SHD3_k127_2181597_10 Adenylate guanylate cyclase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000002231 179.0
SHD3_k127_2181597_11 - - - - 0.000000000000000000000000000000000732 138.0
SHD3_k127_2181597_12 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000001687 94.0
SHD3_k127_2181597_13 General secretion pathway protein C K02452 - - 0.0000000000000000004445 98.0
SHD3_k127_2181597_15 Pentapeptide repeats (8 copies) - - - 0.000001325 59.0
SHD3_k127_2181597_16 PFAM Mo-dependent nitrogenase - - - 0.0001326 51.0
SHD3_k127_2181597_2 Belongs to the N(4) N(6)-methyltransferase family K00590 - 2.1.1.113 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 375.0
SHD3_k127_2181597_3 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 335.0
SHD3_k127_2181597_4 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 321.0
SHD3_k127_2181597_5 Anion-transporting ATPase K01551 - 3.6.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009208 307.0
SHD3_k127_2181597_6 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000845 278.0
SHD3_k127_2181597_7 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004792 254.0
SHD3_k127_2181597_8 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000000000000000000000000002811 198.0
SHD3_k127_2181597_9 Cytosol aminopeptidase family, N-terminal domain - - - 0.000000000000000000000000000000000000000000000001239 184.0
SHD3_k127_2189955_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 2.546e-279 866.0
SHD3_k127_2189955_1 MBOAT, membrane-bound O-acyltransferase family K19294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 512.0
SHD3_k127_2189955_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000000000000000000000000000000004935 164.0
SHD3_k127_2189955_5 Protein of unknown function (DUF3024) - - - 0.000001358 56.0
SHD3_k127_2195719_0 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003552 434.0
SHD3_k127_2195719_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975,K20427 - 2.7.7.27,2.7.7.91 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 355.0
SHD3_k127_2195719_2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000517 245.0
SHD3_k127_2195719_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000002497 229.0
SHD3_k127_2195719_4 Protein of unknown function (DUF1348) K09958 - - 0.000000000000000000000000000000000000000000000001265 174.0
SHD3_k127_2195719_5 - - - - 0.000000000000000000000000000002128 129.0
SHD3_k127_2195719_6 Belongs to the UPF0337 (CsbD) family - - - 0.000000000000000002184 91.0
SHD3_k127_2195719_7 - - - - 0.0000009973 61.0
SHD3_k127_2196865_0 Alpha galactosidase A K07407 - 3.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005752 457.0
SHD3_k127_2196865_1 Alpha-L-arabinofuranosidase B, catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000194 293.0
SHD3_k127_2196865_2 Beta-L-arabinofuranosidase, GH127 - - - 0.000000000000000000000000000000002875 138.0
SHD3_k127_2196865_3 Alpha galactosidase A K07407 - 3.2.1.22 0.000000000000007913 76.0
SHD3_k127_2197058_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000003169 241.0
SHD3_k127_2197058_1 phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000000000000001339 226.0
SHD3_k127_2197058_2 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000001571 217.0
SHD3_k127_2197058_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000000000000000000001704 137.0
SHD3_k127_2197058_4 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000005272 123.0
SHD3_k127_2197058_5 Carboxypeptidase regulatory-like domain - - - 0.000000000007223 70.0
SHD3_k127_2200636_0 Belongs to the glycosyl hydrolase 43 family K15921 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 518.0
SHD3_k127_2200636_1 Poly(3-hydroxybutyrate) depolymerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 452.0
SHD3_k127_2200636_2 sequence-specific DNA binding K02099,K13529,K15051 - 3.2.2.21 0.00000000000000000000000000000002998 137.0
SHD3_k127_2201938_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695,K03696 - - 3.197e-200 654.0
SHD3_k127_2201938_1 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 366.0
SHD3_k127_2201938_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 327.0
SHD3_k127_2201938_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002384 265.0
SHD3_k127_2201938_4 alpha-L-arabinofuranosidase K00694,K15531,K20542 - 2.4.1.12,3.2.1.156,3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000354 255.0
SHD3_k127_2203281_0 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007301 366.0
SHD3_k127_2203281_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000009592 271.0
SHD3_k127_2203281_10 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000002082 103.0
SHD3_k127_2203281_12 cell envelope organization K05807,K08309 - - 0.0000000000003178 79.0
SHD3_k127_2203281_13 Calcineurin-like phosphoesterase - - - 0.000000000009507 78.0
SHD3_k127_2203281_14 - - - - 0.0000001893 64.0
SHD3_k127_2203281_16 PEGA domain - - - 0.0001414 53.0
SHD3_k127_2203281_2 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000001364 251.0
SHD3_k127_2203281_3 xyloglucan:xyloglucosyl transferase activity - - - 0.000000000000000000000000000000000000000000000000000000606 205.0
SHD3_k127_2203281_4 Glycosyl hydrolases family 16 - - - 0.00000000000000000000000000000000000000000000001817 189.0
SHD3_k127_2203281_5 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000000003218 175.0
SHD3_k127_2203281_6 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000000000001744 175.0
SHD3_k127_2203281_7 phosphatase - - - 0.00000000000000000000000000000000000000001766 172.0
SHD3_k127_2203281_8 - - - - 0.0000000000000000000000000000000000000003116 158.0
SHD3_k127_2203281_9 DNA-binding regulatory protein K03088 - - 0.00000000000000000000000000000003265 138.0
SHD3_k127_2211286_0 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004275 551.0
SHD3_k127_2211286_1 COG2755 Lysophospholipase L1 and related esterases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005717 434.0
SHD3_k127_2211286_2 His Kinase A (phosphoacceptor) domain K02668 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 388.0
SHD3_k127_2211286_3 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007731 323.0
SHD3_k127_2211286_4 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007969 296.0
SHD3_k127_2211286_5 GDSL-like Lipase/Acylhydrolase - - - 0.0000000000000000000000000000000000000000002532 168.0
SHD3_k127_2216125_0 Belongs to the GST superfamily K00799 - 2.5.1.18 0.000000000000000000000000000000000000000001036 165.0
SHD3_k127_2216125_1 polysaccharide deacetylase K22278 - 3.5.1.104 0.000000000000000000000000006206 115.0
SHD3_k127_2216125_2 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000002508 82.0
SHD3_k127_2216125_3 translation initiation factor activity K03113 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00001043 51.0
SHD3_k127_2217727_0 Ribonuclease E/G family K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 521.0
SHD3_k127_2217727_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004594 292.0
SHD3_k127_2217727_2 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.000000000000000000000000000000000000000000000000000000000002384 216.0
SHD3_k127_2217727_3 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000005848 191.0
SHD3_k127_2217727_4 unfolded protein binding K04043 - - 0.0000000000000000000000000000000000000001309 154.0
SHD3_k127_2217727_5 - - - - 0.000000000000005799 78.0
SHD3_k127_2217727_6 - - - - 0.000000000006612 71.0
SHD3_k127_2219029_0 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955 - 2.7.1.25,2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003976 547.0
SHD3_k127_2219029_1 Belongs to the nitrite and sulfite reductase 4Fe-4S domain family K00366,K00392 - 1.7.7.1,1.8.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002529 513.0
SHD3_k127_2219029_2 PFAM Phosphoadenosine phosphosulfate reductase K00390,K00957 - 1.8.4.10,1.8.4.8,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 488.0
SHD3_k127_2219029_3 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005317 398.0
SHD3_k127_2219029_4 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002887 276.0
SHD3_k127_2219029_5 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302 - 1.3.1.76,2.1.1.107,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000001007 247.0
SHD3_k127_2219029_6 Predicted membrane protein (DUF2061) - - - 0.00000000000000000000008663 104.0
SHD3_k127_2219029_7 SMART Mov34 MPN PAD-1 family protein K21140 - 3.13.1.6 0.000000000009624 79.0
SHD3_k127_2221078_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004374 404.0
SHD3_k127_2221078_1 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000005113 199.0
SHD3_k127_2221078_2 Sh3 type 3 domain protein K01185,K07184,K07260 - 3.2.1.17,3.4.17.14 0.000000000000000000000000000000000000000000000116 179.0
SHD3_k127_2221078_3 - - - - 0.000000000000000000000000000003683 132.0
SHD3_k127_2221078_5 Domain of unknown function (DUF333) K14475 - - 0.000000000007987 75.0
SHD3_k127_2221078_6 Belongs to the ompA family - - - 0.000000409 62.0
SHD3_k127_2221078_7 phosphorelay signal transduction system - - - 0.00008801 57.0
SHD3_k127_2223820_0 glycyl-tRNA aminoacylation K01880 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008386 610.0
SHD3_k127_2223820_1 oxidoreductase activity K07114 - - 0.0000000000000001348 94.0
SHD3_k127_2226056_0 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 1.799e-238 743.0
SHD3_k127_2226056_1 succinyl-diaminopimelate desuccinylase K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008938 409.0
SHD3_k127_2226056_2 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002615 287.0
SHD3_k127_2226056_3 PilZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001504 260.0
SHD3_k127_2226056_4 enterobactin catabolic process K07214 - - 0.000000000000000000000000000000000000000000000000000000000000000000009452 245.0
SHD3_k127_2226056_5 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000001422 228.0
SHD3_k127_2226056_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000001017 226.0
SHD3_k127_2226056_8 Cytidylate kinase-like family K00945 - 2.7.4.25 0.0000000006494 66.0
SHD3_k127_2226056_9 - - - - 0.00003299 53.0
SHD3_k127_2228193_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 GO:0000166,GO:0000272,GO:0000323,GO:0001666,GO:0001775,GO:0002054,GO:0002060,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004645,GO:0005488,GO:0005515,GO:0005524,GO:0005536,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005783,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0005981,GO:0006015,GO:0006073,GO:0006091,GO:0006109,GO:0006112,GO:0006793,GO:0006796,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006950,GO:0006955,GO:0007275,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008184,GO:0008219,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009251,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010604,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0012501,GO:0012505,GO:0014070,GO:0014074,GO:0015980,GO:0016052,GO:0016192,GO:0016208,GO:0016528,GO:0016529,GO:0016740,GO:0016757,GO:0016758,GO:0017076,GO:0019222,GO:0019637,GO:0019693,GO:0019725,GO:0019842,GO:0030003,GO:0030016,GO:0030017,GO:0030018,GO:0030141,GO:0030170,GO:0030246,GO:0030424,GO:0030554,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031406,GO:0031410,GO:0031674,GO:0031974,GO:0031982,GO:0031983,GO:0032052,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032881,GO:0032940,GO:0032991,GO:0033293,GO:0033500,GO:0034774,GO:0035578,GO:0035639,GO:0036094,GO:0036230,GO:0036293,GO:0042119,GO:0042221,GO:0042582,GO:0042592,GO:0042593,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043299,GO:0043312,GO:0043467,GO:0043470,GO:0043471,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045055,GO:0045321,GO:0045819,GO:0045913,GO:0046390,GO:0046391,GO:0046683,GO:0046903,GO:0046983,GO:0048029,GO:0048037,GO:0048518,GO:0048522,GO:0048856,GO:0048878,GO:0050662,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051591,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055114,GO:0060205,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0070013,GO:0070265,GO:0070266,GO:0070279,GO:0070482,GO:0070873,GO:0070875,GO:0071704,GO:0072503,GO:0072507,GO:0080090,GO:0090407,GO:0097159,GO:0097300,GO:0097367,GO:0097458,GO:0097708,GO:0098723,GO:0098771,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0101002,GO:0120025,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1904813 2.4.1.1 1.81e-265 845.0
SHD3_k127_2228193_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 1.276e-201 651.0
SHD3_k127_2228193_10 Peptidase family M50 - - - 0.000000000000000000000000000000000002037 147.0
SHD3_k127_2228193_11 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000007237 141.0
SHD3_k127_2228193_3 Domain of unknown function (DUF4143) K07133 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 430.0
SHD3_k127_2228193_4 serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 417.0
SHD3_k127_2228193_5 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000256 284.0
SHD3_k127_2228193_6 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002161 256.0
SHD3_k127_2228193_7 PFAM ABC transporter related K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000002053 239.0
SHD3_k127_2228193_8 Periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000000000000003466 205.0
SHD3_k127_2228193_9 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000004595 178.0
SHD3_k127_2239764_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 454.0
SHD3_k127_2239764_1 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000458 238.0
SHD3_k127_2239764_2 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000006085 199.0
SHD3_k127_2239764_3 - - - - 0.00000000000000000000000000000000000000001799 163.0
SHD3_k127_2239764_4 PFAM PilT protein domain protein - - - 0.000000000000000000000000000000000002701 143.0
SHD3_k127_2239764_5 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000000000000003432 89.0
SHD3_k127_2239764_6 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000002465 93.0
SHD3_k127_2239764_8 - - - - 0.000001673 58.0
SHD3_k127_2242693_0 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000069 441.0
SHD3_k127_2242693_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005631 426.0
SHD3_k127_2242693_2 ATPase domain of DNA mismatch repair MUTS family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009079 418.0
SHD3_k127_2242693_3 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 295.0
SHD3_k127_2242693_4 Acyl-protein synthetase, LuxE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003281 288.0
SHD3_k127_2242693_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007374 259.0
SHD3_k127_2242693_6 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000006682 235.0
SHD3_k127_2242693_9 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.00000000000000000000001136 104.0
SHD3_k127_2257010_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009452 479.0
SHD3_k127_2257010_1 N-terminal domain of (some) glycogen debranching enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 444.0
SHD3_k127_2257010_10 cellulose binding - - - 0.0001816 54.0
SHD3_k127_2257010_2 PFAM major facilitator superfamily MFS_1 K13021 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 401.0
SHD3_k127_2257010_3 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003824 312.0
SHD3_k127_2257010_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003793 266.0
SHD3_k127_2257010_5 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001652 258.0
SHD3_k127_2257010_6 lactoylglutathione lyase activity K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000000000000003195 234.0
SHD3_k127_2257010_7 - - - - 0.00000000000000000000000000001567 134.0
SHD3_k127_2257010_8 DNA-templated transcription, initiation - - - 0.000002145 61.0
SHD3_k127_2257010_9 Sortilin, neurotensin receptor 3, - - - 0.0000552 55.0
SHD3_k127_2263424_0 PFAM Rh family protein ammonium transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 589.0
SHD3_k127_2263424_1 Extradiol ring-cleavage dioxygenase K15777 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 387.0
SHD3_k127_2263424_2 Nucleoside-diphosphate-sugar epimerases - - - 0.0000000000000000000000000000000000000000003192 171.0
SHD3_k127_2263424_3 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000002108 113.0
SHD3_k127_2263424_4 oxidoreductase activity K07114 - - 0.0000000000006657 78.0
SHD3_k127_2270512_0 UDP binding domain K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000671 475.0
SHD3_k127_2270512_1 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000001555 219.0
SHD3_k127_2270512_2 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000002301 170.0
SHD3_k127_2270512_3 Organic Anion Transporter Polypeptide (OATP) family - - - 0.00000000000000000000000000000000003152 143.0
SHD3_k127_2270512_4 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000001741 129.0
SHD3_k127_2272669_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 7.827e-208 651.0
SHD3_k127_2272669_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 498.0
SHD3_k127_2272669_3 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000000000000000000000000000000000000000000000004061 213.0
SHD3_k127_2272669_4 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000003905 137.0
SHD3_k127_2289026_0 Sulfate transporter subunit K02048 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 482.0
SHD3_k127_2289026_1 Binding-protein-dependent transport system inner membrane component K02046 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004487 353.0
SHD3_k127_2289026_2 ABC-type sulfate transport system, permease component K02047 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004081 327.0
SHD3_k127_2289026_3 - - - - 0.0000000000000000000000003963 121.0
SHD3_k127_2289026_4 Multicopper oxidase - - - 0.000000004147 63.0
SHD3_k127_2289026_5 Small protein - - - 0.000001224 55.0
SHD3_k127_2296538_0 ATPases associated with a variety of cellular activities K10441 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005865 317.0
SHD3_k127_2296538_1 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000005468 242.0
SHD3_k127_2296538_2 peptidyl-tyrosine sulfation - - - 0.000006274 59.0
SHD3_k127_2299792_0 NADH:flavin oxidoreductase / NADH oxidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009927 376.0
SHD3_k127_2299792_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061 346.0
SHD3_k127_2299792_2 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process - - - 0.00000000000000000000000000000000000000000005164 170.0
SHD3_k127_2299792_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - GO:0000166,GO:0003674,GO:0003824,GO:0004303,GO:0005488,GO:0005496,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006694,GO:0006703,GO:0008150,GO:0008152,GO:0008202,GO:0008210,GO:0008289,GO:0008610,GO:0009058,GO:0009987,GO:0010817,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0033764,GO:0034754,GO:0036094,GO:0042445,GO:0042446,GO:0042562,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0065007,GO:0065008,GO:0070401,GO:0071704,GO:0097159,GO:0099130,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903924 - 0.0000000000000000000000000000000000000000001033 169.0
SHD3_k127_2299792_4 Transcription factor zinc-finger K09981 - - 0.000000000000000000000000002058 115.0
SHD3_k127_2299792_5 cheY-homologous receiver domain - - - 0.00000000000000000006485 103.0
SHD3_k127_230100_0 ErfK ybiS ycfS ynhG family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006993 412.0
SHD3_k127_230100_1 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000481 293.0
SHD3_k127_230100_2 NUDIX hydrolase K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000002195 180.0
SHD3_k127_230100_3 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000002049 154.0
SHD3_k127_230100_4 protein containing a von Willebrand factor type A (vWA) domain - - - 0.00000000000000000000000000000000000006196 160.0
SHD3_k127_230100_6 Belongs to the type-B carboxylesterase lipase family - - - 0.0000000000000006084 91.0
SHD3_k127_230100_7 LGFP repeat - - - 0.00000000002714 76.0
SHD3_k127_2320097_0 Esterase, phb depolymerase family K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002229 363.0
SHD3_k127_2320097_1 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000007359 202.0
SHD3_k127_2320097_2 Belongs to the glycosyl hydrolase 30 family K01201,K15924 - 3.2.1.136,3.2.1.45 0.00000000000000000000000000000000000000000000000007279 197.0
SHD3_k127_2320097_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000176 125.0
SHD3_k127_2320097_4 - - - - 0.0000000000000000000001052 101.0
SHD3_k127_2320097_5 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000001425 55.0
SHD3_k127_2320097_6 Alternative locus ID - - - 0.000003755 60.0
SHD3_k127_2320097_7 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0003054 51.0
SHD3_k127_2320403_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 557.0
SHD3_k127_2320403_1 winged helix-turn-helix - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 539.0
SHD3_k127_2320403_2 PFAM NAD dependent epimerase dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 426.0
SHD3_k127_2320403_3 Nucleotidyl transferase K00978 - 2.7.7.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 350.0
SHD3_k127_2320403_4 ATP-grasp domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 324.0
SHD3_k127_2320403_5 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005852 292.0
SHD3_k127_2320403_6 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004062 246.0
SHD3_k127_2320403_7 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000004406 224.0
SHD3_k127_2320403_8 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000008851 56.0
SHD3_k127_2320403_9 PKD domain - - - 0.000001979 56.0
SHD3_k127_2335381_0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 2.918e-320 1003.0
SHD3_k127_2335381_1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335 - 1.6.5.3 2.327e-198 624.0
SHD3_k127_2335381_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone - - - 0.0000000000000000000000000000000000000000000001597 174.0
SHD3_k127_2345742_0 Belongs to the glycosyl hydrolase 26 family K01218 - 3.2.1.78 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006751 392.0
SHD3_k127_2345742_1 stress-induced mitochondrial fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 295.0
SHD3_k127_2345742_3 Domain of unknown function (DUF1848) - - - 0.00000000000000000000000000000000000000000000192 180.0
SHD3_k127_2345742_4 Reverse transcriptase-like K03469 - 3.1.26.4 0.0000000000000000000000000000000000015 150.0
SHD3_k127_2345742_5 endo-1,4-beta-xylanase activity K01181 - 3.2.1.8 0.00000000000000000000000003027 126.0
SHD3_k127_2345742_6 Glycosyl transferases group 1 - - - 0.00001061 54.0
SHD3_k127_2346810_0 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004771 464.0
SHD3_k127_2346810_1 PFAM Methyltransferase type 11 K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000001203 263.0
SHD3_k127_2346810_2 Flavin reductase like domain - - - 0.000000000000000000000000000000000000000000000000000000000005288 225.0
SHD3_k127_2346810_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000001038 149.0
SHD3_k127_2346810_4 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000003036 135.0
SHD3_k127_2346810_5 cytochrome c - - - 0.00000000000000000000001855 108.0
SHD3_k127_2346810_6 zinc ion transport - - - 0.000000000000000005013 98.0
SHD3_k127_2346810_7 DNA-binding transcription factor activity K21886,K21903 - - 0.000000000000000008894 88.0
SHD3_k127_2346810_8 Phosphoglycerate mutase family K08296 - - 0.000000000000002318 83.0
SHD3_k127_2346810_9 Protein of unknown function (DUF3341) - - - 0.000000548 58.0
SHD3_k127_2350142_0 ATPase activity K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006192 338.0
SHD3_k127_2350142_1 Transport permease protein K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007809 312.0
SHD3_k127_2350142_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000003173 102.0
SHD3_k127_2350142_3 response regulator K03413 - - 0.0000002152 63.0
SHD3_k127_2350142_4 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.000006938 57.0
SHD3_k127_2369487_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1190.0
SHD3_k127_2369487_1 Dehydrogenase E1 component K00164 - 1.2.4.2 2.357e-308 970.0
SHD3_k127_2369487_10 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003292 263.0
SHD3_k127_2369487_11 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000007803 240.0
SHD3_k127_2369487_12 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000002933 211.0
SHD3_k127_2369487_14 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000002091 185.0
SHD3_k127_2369487_15 ribonuclease activity - - - 0.00000000000000000000000000005773 124.0
SHD3_k127_2369487_16 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000000000000000009058 98.0
SHD3_k127_2369487_17 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000001 99.0
SHD3_k127_2369487_2 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.125e-277 868.0
SHD3_k127_2369487_3 tRNA nucleotidyltransferase domain 2 putative K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 526.0
SHD3_k127_2369487_4 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 442.0
SHD3_k127_2369487_5 negative regulation of DNA recombination K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002591 419.0
SHD3_k127_2369487_6 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 401.0
SHD3_k127_2369487_7 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009447 332.0
SHD3_k127_2369487_8 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003796 287.0
SHD3_k127_2369487_9 Pectate lyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005681 268.0
SHD3_k127_2381995_0 Uncharacterised ArCR, COG2043 - - - 0.000000000000000000000000000000000000000000000000000000000000729 221.0
SHD3_k127_2381995_1 - - - - 0.00000000000000000000000000000000000000000000000004292 188.0
SHD3_k127_2381995_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000001396 168.0
SHD3_k127_2381995_3 PFAM ROK family protein K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000007125 177.0
SHD3_k127_2381995_5 photoreceptor activity - - - 0.00000000000000000000000000006183 132.0
SHD3_k127_2381995_6 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000003534 123.0
SHD3_k127_2381995_7 - - - - 0.00000000000000000007225 100.0
SHD3_k127_2381995_8 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000001554 75.0
SHD3_k127_2381995_9 EF-hand, calcium binding motif - - - 0.0008789 47.0
SHD3_k127_2384738_0 Alpha-galactosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 337.0
SHD3_k127_2384738_1 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000001922 204.0
SHD3_k127_2384738_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.000000000000000000000000000000000000000000000000000005006 204.0
SHD3_k127_2394439_0 Tetratricopeptide repeat - - - 0.0 3448.0
SHD3_k127_2394439_1 Aminotransferase K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001219 287.0
SHD3_k127_2394439_2 Domain of unknown function (DUF374) K09778 - - 0.000000000000000000000001046 115.0
SHD3_k127_2394439_3 - - - - 0.000000000001482 79.0
SHD3_k127_2394926_0 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 1.343e-254 812.0
SHD3_k127_2394926_1 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 1.99e-207 660.0
SHD3_k127_2394926_2 two component, sigma54 specific, transcriptional regulator, Fis family K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 417.0
SHD3_k127_2394926_3 - - - - 0.00000000000000000000000000000000000000000000000000000008763 223.0
SHD3_k127_2394926_5 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000006563 151.0
SHD3_k127_2394926_6 PFAM Thioesterase superfamily K02614 - - 0.0000000000000000000000000000000000007016 150.0
SHD3_k127_2394926_7 - - - - 0.000000000000000000000000002339 120.0
SHD3_k127_2394926_8 Tetratricopeptide repeat - - - 0.00000000000000000000000003005 121.0
SHD3_k127_2403488_1 Pfam Sulfatase - - - 0.0000000000000000001657 104.0
SHD3_k127_241037_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 8.862e-200 653.0
SHD3_k127_241037_1 Glycosyl transferase family 21 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 609.0
SHD3_k127_241037_2 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.0000000000007244 73.0
SHD3_k127_2417551_0 repeat protein - - - 0.000000000003145 81.0
SHD3_k127_2441964_0 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 301.0
SHD3_k127_2441964_1 Chemotaxis protein CheY K03413 - - 0.00000000000000000000000000000000000000000000000000000000000000000001493 235.0
SHD3_k127_2441964_10 oxidoreductase activity K07114 - - 0.0000002704 56.0
SHD3_k127_2441964_2 mevalonate kinase K00869 - 2.7.1.36 0.00000000000000000000000000000000000000000000000000000000000003712 225.0
SHD3_k127_2441964_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000002197 227.0
SHD3_k127_2441964_5 oxidoreductase activity K07114 - - 0.0000000000000000000000000000000000000001241 166.0
SHD3_k127_2441964_6 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000001321 157.0
SHD3_k127_2441964_7 oxidoreductase activity K07114 - - 0.0000000000000000000000000000000000000001999 166.0
SHD3_k127_2441964_8 oxidoreductase activity K07114 - - 0.0000000000000000000000000000000000001896 155.0
SHD3_k127_2444010_0 PFAM Methyltransferase type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000852 471.0
SHD3_k127_2444010_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005404 458.0
SHD3_k127_2444010_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003497 272.0
SHD3_k127_2444010_3 Surface antigen - - - 0.000000000000000000000000000000000000000000000000000007492 209.0
SHD3_k127_2444010_4 PFAM Methyltransferase type - - - 0.0000000000000000000000000009488 124.0
SHD3_k127_2444010_5 PhoQ Sensor - - - 0.00000000000000001001 90.0
SHD3_k127_244723_0 Cation efflux family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 395.0
SHD3_k127_244723_1 Spore coat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 370.0
SHD3_k127_244723_13 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000008847 63.0
SHD3_k127_244723_2 PFAM Chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006447 301.0
SHD3_k127_244723_3 methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000009819 272.0
SHD3_k127_244723_4 - - - - 0.0000000000000000000000000000000000000000003084 176.0
SHD3_k127_244723_5 - - - - 0.00000000000000000000000000000000000000001928 172.0
SHD3_k127_244723_6 Methyltransferase domain - - - 0.000000000000000000000000000000000000000706 164.0
SHD3_k127_244723_7 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000204 139.0
SHD3_k127_244723_8 NAD(P)H-binding - - - 0.0000000000000000000000000003722 116.0
SHD3_k127_244723_9 PFAM Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000004439 121.0
SHD3_k127_2458235_0 heat shock protein 70 K04043 - - 7.707e-301 931.0
SHD3_k127_2458235_1 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003909 532.0
SHD3_k127_2458235_10 DnaJ molecular chaperone homology domain - - - 0.000000000000000000000000000000000000000000000000000000000000002943 237.0
SHD3_k127_2458235_12 - - - - 0.0000000000000000000000007562 121.0
SHD3_k127_2458235_13 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000001267 116.0
SHD3_k127_2458235_15 - - - - 0.0000000000000000009036 98.0
SHD3_k127_2458235_17 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000004347 66.0
SHD3_k127_2458235_18 Prokaryotic N-terminal methylation motif K02456 - - 0.00001622 51.0
SHD3_k127_2458235_2 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K02667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 461.0
SHD3_k127_2458235_3 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006357 381.0
SHD3_k127_2458235_4 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 348.0
SHD3_k127_2458235_5 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 349.0
SHD3_k127_2458235_6 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 331.0
SHD3_k127_2458235_7 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000001532 259.0
SHD3_k127_2458235_8 PLD-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002332 238.0
SHD3_k127_2458235_9 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000002079 231.0
SHD3_k127_2460280_0 phosphoglucan water dikinase K15535 - 2.7.9.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004552 408.0
SHD3_k127_2460280_1 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005351 340.0
SHD3_k127_2460280_2 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000001129 244.0
SHD3_k127_2460280_3 Homologues of snake disintegrins - - - 0.000000006391 69.0
SHD3_k127_2460280_4 Methyltransferase domain - - - 0.00004693 57.0
SHD3_k127_2464794_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 539.0
SHD3_k127_2464794_2 nucleotide metabolic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 293.0
SHD3_k127_2464794_3 - - - - 0.00000000000000000000000000000000000000000000000000000001426 207.0
SHD3_k127_2464794_4 CBS domain containing protein - - - 0.000000000000000000000000000000000000000000000000000001019 208.0
SHD3_k127_2464794_6 - - - - 0.00000418 49.0
SHD3_k127_2467885_0 Domain of unknown function (DUF4349) - - - 0.0000000000000000000000000000000000000000000000008256 185.0
SHD3_k127_2467885_2 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000000000000006823 141.0
SHD3_k127_2467885_3 Protein conserved in bacteria - - - 0.0000000000000000101 97.0
SHD3_k127_2467885_4 bacterial-type flagellum-dependent cell motility - - - 0.00000000000000002368 96.0
SHD3_k127_2472954_0 PFAM Nickel-dependent hydrogenase, large subunit K00436,K14126 - 1.12.1.2,1.8.98.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002654 398.0
SHD3_k127_2472954_1 PFAM NADH ubiquinone oxidoreductase 20 kDa subunit K14128 - 1.8.98.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 322.0
SHD3_k127_2472954_2 Periplasmic binding protein K01999 - - 0.000000000000000000000000000000000000004021 165.0
SHD3_k127_2472954_3 PFAM Roadblock LC7 family protein K07131 - - 0.0000000000000000000000000000904 119.0
SHD3_k127_2472954_4 PFAM Major Facilitator Superfamily K03535 - - 0.000000000000000000000411 110.0
SHD3_k127_2472954_5 4Fe-4S binding domain - - - 0.000000000003524 75.0
SHD3_k127_2472954_6 uveal autoantigen with coiled-coil domains and ankyrin repeats - GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0007154,GO:0007165,GO:0008150,GO:0008219,GO:0008630,GO:0008631,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010604,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0012505,GO:0016020,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030162,GO:0031323,GO:0031325,GO:0031347,GO:0031348,GO:0031967,GO:0031975,GO:0032101,GO:0032102,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0032991,GO:0033157,GO:0033554,GO:0034599,GO:0035556,GO:0036473,GO:0042221,GO:0042306,GO:0042307,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0043293,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045862,GO:0046822,GO:0046824,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070201,GO:0070887,GO:0080090,GO:0080134,GO:0090087,GO:0090316,GO:0097190,GO:0097193,GO:1900180,GO:1900182,GO:1901222,GO:1901223,GO:1902531,GO:1902532,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951,GO:2000116,GO:2001056 - 0.0001464 55.0
SHD3_k127_2475313_0 Esterase PHB depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 530.0
SHD3_k127_2475313_10 Xylose operon regulatory protein K02529 - - 0.0000000000000000000000000000000000000000000000000005556 199.0
SHD3_k127_2475313_11 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000004972 179.0
SHD3_k127_2475313_12 COG2801 Transposase and inactivated derivatives - - - 0.00000000000000000000004471 105.0
SHD3_k127_2475313_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01218 - 3.2.1.78 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 391.0
SHD3_k127_2475313_3 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 389.0
SHD3_k127_2475313_4 Glycosyl hydrolase family 65, N-terminal domain K15923 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 371.0
SHD3_k127_2475313_5 Poly3-Hydroxybutyrate Depolymerase K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009015 343.0
SHD3_k127_2475313_6 Beta-xylanase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004834 294.0
SHD3_k127_2475313_7 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009787 292.0
SHD3_k127_2475313_8 xylan catabolic process K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000226 263.0
SHD3_k127_2475313_9 xylan catabolic process K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001453 259.0
SHD3_k127_247717_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 2.165e-311 973.0
SHD3_k127_247717_1 Domain of unknown function (DUF4070) - - - 3.277e-216 688.0
SHD3_k127_247717_10 PFAM glycoside hydrolase, family 10 - - - 0.00000000000000000000000000000008285 130.0
SHD3_k127_247717_11 helix_turn_helix, arabinose operon control protein K07506 - - 0.0000002968 53.0
SHD3_k127_247717_2 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005735 462.0
SHD3_k127_247717_3 Pectate lyase K01728 - 4.2.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000568 404.0
SHD3_k127_247717_4 Pectate lyase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005102 395.0
SHD3_k127_247717_5 PFAM glycoside hydrolase, family 10 K01181 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001417 282.0
SHD3_k127_247717_6 Pectinesterase K01051 - 3.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000001099 251.0
SHD3_k127_247717_7 - - - - 0.0000000000000000000000000000000000000002029 167.0
SHD3_k127_247717_9 Xylose operon regulatory protein K02529 - - 0.00000000000000000000000000000000005207 148.0
SHD3_k127_2477545_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K08244 - 2.7.9.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000704 626.0
SHD3_k127_2477545_1 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004235 407.0
SHD3_k127_2477545_2 phosphoserine phosphatase activity K01768,K07315,K16922 - 3.1.3.3,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007696 393.0
SHD3_k127_2477545_4 transferase activity, transferring glycosyl groups K00720 - 2.4.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000008153 259.0
SHD3_k127_2477545_5 - - - - 0.000000000000000000000001477 113.0
SHD3_k127_2477545_6 negative regulation of translational initiation - - - 0.000000000002394 76.0
SHD3_k127_2477545_7 mannose-ethanolamine phosphotransferase activity - - - 0.000002525 49.0
SHD3_k127_2489760_0 ADP-ribosylation factor family K06883 - - 0.000000000000000000000000000000000000000000000000002487 207.0
SHD3_k127_2489760_1 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000000000000000009251 188.0
SHD3_k127_2489760_2 Putative member of DMT superfamily (DUF486) K09922 - - 0.00000000000000000000000000000000000000000000000238 175.0
SHD3_k127_2489760_4 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.000000005881 69.0
SHD3_k127_2489760_5 GGDEF domain K03413 - - 0.00000007097 66.0
SHD3_k127_2489760_6 deoxyhypusine monooxygenase activity - - - 0.0000002012 62.0
SHD3_k127_2489760_7 - K07726 - - 0.0004237 48.0
SHD3_k127_2490873_0 Galactose-1-phosphate uridyl transferase, C-terminal domain K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 448.0
SHD3_k127_2490873_1 Belongs to the GHMP kinase family. GalK subfamily K00849 - 2.7.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003939 401.0
SHD3_k127_2490873_2 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008844 372.0
SHD3_k127_251337_0 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007552 419.0
SHD3_k127_251337_1 - - - - 0.0000000000000000000000000000000000000000000000000000000004491 218.0
SHD3_k127_251337_2 - - - - 0.0000000000000000000000000000000000000001219 159.0
SHD3_k127_251337_3 - - - - 0.000000000000000006221 96.0
SHD3_k127_251337_4 ATPase. Has a role at an early stage in the morphogenesis of the spore coat - - - 0.00000703 58.0
SHD3_k127_251337_5 Glycosyltransferase family 87 K13669 GO:0000026,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0004377,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0043750,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0070085,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.0002322 53.0
SHD3_k127_2521058_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006506 383.0
SHD3_k127_2521058_1 PFAM Methyltransferase type - - - 0.0000000000000000000000000000000000000000000000000000000000000000001906 244.0
SHD3_k127_2521058_10 FHA domain - - - 0.00000000000000002303 86.0
SHD3_k127_2521058_11 radical SAM domain protein K20444 - - 0.00000000000000009722 95.0
SHD3_k127_2521058_12 Belongs to the peptidase S1 family K20673 GO:0002225,GO:0002376,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002759,GO:0002760,GO:0002784,GO:0002788,GO:0002804,GO:0002831,GO:0002833,GO:0002920,GO:0002922,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005509,GO:0005575,GO:0005576,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008592,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0016787,GO:0017171,GO:0019538,GO:0023051,GO:0023056,GO:0031347,GO:0031349,GO:0032101,GO:0032103,GO:0042742,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043900,GO:0043902,GO:0044238,GO:0045087,GO:0045752,GO:0046872,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050830,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0065007,GO:0070011,GO:0071704,GO:0080134,GO:0098542,GO:0140096,GO:1900150,GO:1901564 - 0.000002956 60.0
SHD3_k127_2521058_14 OsmC-like protein K07397 - - 0.0002768 48.0
SHD3_k127_2521058_2 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000001642 244.0
SHD3_k127_2521058_3 Caspase domain - - - 0.000000000000000000000000000000000000000000000000004443 206.0
SHD3_k127_2521058_4 Conserved protein of dim6 ntab family - - - 0.00000000000000000000000000000000000000007624 158.0
SHD3_k127_2521058_6 Periplasmic binding protein-like domain K01775 - 5.1.1.1 0.000000000000000000000000004306 126.0
SHD3_k127_2521058_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000009362 105.0
SHD3_k127_2521058_9 Radical SAM domain protein K06139 - - 0.000000000000000004499 96.0
SHD3_k127_2523011_0 Periplasmic protein TonB links inner and outer membranes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 437.0
SHD3_k127_2523011_1 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008216 300.0
SHD3_k127_2523011_10 Forkhead associated domain - - - 0.0000000000000001961 89.0
SHD3_k127_2523011_11 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000001159 79.0
SHD3_k127_2523011_13 endonuclease I - - - 0.0003227 52.0
SHD3_k127_2523011_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009218 275.0
SHD3_k127_2523011_3 Copper amine oxidase N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001164 269.0
SHD3_k127_2523011_4 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000000000000002561 216.0
SHD3_k127_2523011_5 alpha-L-arabinofuranosidase - - - 0.000000000000000000000000000000000000000000006967 186.0
SHD3_k127_2523011_6 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000623 144.0
SHD3_k127_2523011_7 Biopolymer transport protein ExbD TolR K03559 - - 0.0000000000000000000000000000000004786 135.0
SHD3_k127_2523011_9 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000004089 115.0
SHD3_k127_2557457_0 phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009881 317.0
SHD3_k127_2557457_1 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004303 297.0
SHD3_k127_2557457_2 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000006945 198.0
SHD3_k127_2557457_3 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 0.000000000000000000000000000692 123.0
SHD3_k127_2557457_4 CoA-binding protein K06929 - - 0.0000000000000000000000002512 111.0
SHD3_k127_2557457_6 Protein of unknown function (DUF3147) - - - 0.00000000000000000001045 98.0
SHD3_k127_2557457_7 Protein of unknown function (DUF3147) - - - 0.0000000000000000003933 94.0
SHD3_k127_2557457_8 SlyX K03745 - - 0.0001873 51.0
SHD3_k127_256013_0 Glycosyl hydrolase family 59 - - - 0.0 1422.0
SHD3_k127_256013_1 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004065 294.0
SHD3_k127_256013_2 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.000000000000000000000000000000000000000000000000000000005234 213.0
SHD3_k127_256013_3 PFAM regulator of chromosome condensation, RCC1 - - - 0.00000000000000000000000000000000000000001469 168.0
SHD3_k127_256013_4 Flagellar hook protein flgE - - - 0.0004344 53.0
SHD3_k127_2564734_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000507 583.0
SHD3_k127_2564734_1 Glycosyl transferase 4-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 394.0
SHD3_k127_2564734_2 Protein required for attachment to host cells - - - 0.000000000000000000000000000000000155 141.0
SHD3_k127_2564734_3 Protein of unknown function (DUF1348) K09958 - - 0.0000000000000000000000000001687 121.0
SHD3_k127_2564734_4 - - - - 0.000000000000148 73.0
SHD3_k127_2578800_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 294.0
SHD3_k127_2578800_1 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002017 239.0
SHD3_k127_2578800_2 Gram-negative bacterial TonB protein C-terminal - - - 0.00000000000000000000000000000000000000000000000006374 189.0
SHD3_k127_2578800_3 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 3.4.21.88 0.0000000000000000000000000000000000000000000001021 171.0
SHD3_k127_2578800_4 Biopolymer transport protein ExbD/TolR K03559 - - 0.0000000000000000000000000000000000000000004069 163.0
SHD3_k127_2578800_5 Protein of unknown function (DUF2752) - - - 0.00000000000000001312 88.0
SHD3_k127_2583737_0 PFAM MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 575.0
SHD3_k127_2583737_2 organic phosphonate transport K02044 - - 0.00000000000000000005475 92.0
SHD3_k127_2587904_0 Beta propeller domain - - - 2.108e-224 734.0
SHD3_k127_2587904_1 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000378 272.0
SHD3_k127_2587904_2 Glycosyl transferase - - - 0.0000000000000000002902 88.0
SHD3_k127_2587904_3 Rare lipoprotein A (RlpA)-like double-psi beta-barrel K20628 - - 0.00000000002255 68.0
SHD3_k127_2598769_0 Domain of unknown function (DUF3488) - - - 1.303e-229 735.0
SHD3_k127_2598769_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003898 576.0
SHD3_k127_2598769_10 Protein kinase domain K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000002383 270.0
SHD3_k127_2598769_11 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000268 217.0
SHD3_k127_2598769_12 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000002267 209.0
SHD3_k127_2598769_13 ABC transporter K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000002316 189.0
SHD3_k127_2598769_14 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000001512 163.0
SHD3_k127_2598769_16 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.00000000000000000000000000000000006296 150.0
SHD3_k127_2598769_18 PFAM macrophage migration inhibitory factor - - - 0.00000000000000000000000000002463 128.0
SHD3_k127_2598769_19 AsmA family K07289 - - 0.0000000000000000000000000002765 131.0
SHD3_k127_2598769_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 462.0
SHD3_k127_2598769_20 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000008457 118.0
SHD3_k127_2598769_22 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000001339 119.0
SHD3_k127_2598769_24 DUF167 K09131 - - 0.0000000000000719 78.0
SHD3_k127_2598769_25 Bacterial regulatory proteins, tetR family - - - 0.000006607 56.0
SHD3_k127_2598769_26 3-deoxy-7-phosphoheptulonate synthase K03856 - 2.5.1.54 0.000008462 57.0
SHD3_k127_2598769_3 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007475 419.0
SHD3_k127_2598769_4 Iron-containing alcohol dehydrogenase K00001,K01714,K13954 - 1.1.1.1,4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008619 370.0
SHD3_k127_2598769_6 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639,K00652 - 2.3.1.29,2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003814 347.0
SHD3_k127_2598769_7 Diguanylate cyclase, GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 344.0
SHD3_k127_2598769_8 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001621 282.0
SHD3_k127_2598769_9 Zn peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009673 275.0
SHD3_k127_2614131_0 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005616 594.0
SHD3_k127_2614131_1 Chemotaxis phosphatase CheX - - - 0.00000000000000000000694 106.0
SHD3_k127_2614131_2 helix_turn_helix, Lux Regulon - - - 0.000000000000000003878 89.0
SHD3_k127_2614131_3 helix_turn_helix, Lux Regulon - - - 0.00000000005993 64.0
SHD3_k127_2618460_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000002861 246.0
SHD3_k127_2618460_1 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000005305 206.0
SHD3_k127_2641593_0 radical SAM K06871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008573 527.0
SHD3_k127_2641593_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 412.0
SHD3_k127_2641593_10 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.0000000001346 69.0
SHD3_k127_2641593_2 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 339.0
SHD3_k127_2641593_3 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000004956 234.0
SHD3_k127_2641593_4 Thioredoxin K03671 - - 0.0000000000000000000000000000000000000009081 152.0
SHD3_k127_2641593_5 belongs to the thioredoxin family K00384,K03671 - 1.8.1.9 0.00000000000000000000000000000000000009137 144.0
SHD3_k127_2641593_6 Protein of unknown function (DUF1634) - - - 0.0000000000000000000000000003321 121.0
SHD3_k127_2641593_7 - - - - 0.0000000000000000000000003689 116.0
SHD3_k127_2641593_8 PFAM AIG2 family protein - - - 0.000000000000000000003126 99.0
SHD3_k127_2641593_9 cell redox homeostasis K03671,K03672 - 1.8.1.8 0.000000000000003307 83.0
SHD3_k127_2643348_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0 1052.0
SHD3_k127_2643348_1 SMART helicase c2 K03722 - 3.6.4.12 1.063e-204 656.0
SHD3_k127_2643348_10 Protein-disulfide isomerase - - - 0.00000000000000000000000000000000000000000000000000007818 200.0
SHD3_k127_2643348_11 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000006322 113.0
SHD3_k127_2643348_2 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003959 409.0
SHD3_k127_2643348_3 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002266 383.0
SHD3_k127_2643348_4 ABC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008722 349.0
SHD3_k127_2643348_5 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000041 289.0
SHD3_k127_2643348_6 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005203 285.0
SHD3_k127_2643348_7 Thioredoxin-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000005077 242.0
SHD3_k127_2643348_8 peptidylprolyl isomerase K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000007232 248.0
SHD3_k127_2643348_9 protein conserved in cyanobacteria - - - 0.0000000000000000000000000000000000000000000000000000000003459 212.0
SHD3_k127_2652351_0 AcrB/AcrD/AcrF family - - - 3.203e-299 950.0
SHD3_k127_2652351_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 3.018e-219 700.0
SHD3_k127_2652351_2 Methyltransferase type 12 K03439 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008757,GO:0016278,GO:0016740,GO:0016741,GO:0032259 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 332.0
SHD3_k127_2652351_3 Sulfatase-modifying factor enzyme 1 - - - 0.0000000000000000000000000000000000000000001012 172.0
SHD3_k127_2652351_4 Outer membrane efflux protein - - - 0.0000000000000000000000000000000009942 147.0
SHD3_k127_2652351_5 Type VI secretion system effector, Hcp K11903 - - 0.00000000000000000002683 102.0
SHD3_k127_2652351_6 Forkhead associated domain - - - 0.00000000001699 73.0
SHD3_k127_2652351_7 Collagen triple helix repeat (20 copies) - - - 0.0000000002393 72.0
SHD3_k127_2652351_8 phosphatidylinositol metabolic process K13671 GO:0000026,GO:0000030,GO:0003674,GO:0003824,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0070085,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.0000002101 63.0
SHD3_k127_2652351_9 - - - - 0.00001766 55.0
SHD3_k127_2653881_0 Dynamin family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 568.0
SHD3_k127_2653881_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004282 508.0
SHD3_k127_2653881_2 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 458.0
SHD3_k127_2653881_3 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 450.0
SHD3_k127_2653881_4 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006471 389.0
SHD3_k127_2653881_5 Small GTP-binding protein K06883 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 303.0
SHD3_k127_2653881_6 phosphoserine phosphatase K02203 - 2.7.1.39,3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000009176 248.0
SHD3_k127_2653881_7 pfkB family carbohydrate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001646 251.0
SHD3_k127_2653881_8 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000001401 107.0
SHD3_k127_2653881_9 Histidine kinase - - - 0.000007243 55.0
SHD3_k127_2654749_0 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 336.0
SHD3_k127_2654749_1 COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) K00917 - 2.7.1.144 0.000000000000000000000000000000000000000000000000000000000000000000008013 256.0
SHD3_k127_2654749_2 ABC-type sugar transport system, periplasmic component K10439 - - 0.0000000002314 74.0
SHD3_k127_2654749_3 PFAM regulator of chromosome condensation, RCC1 - - - 0.000001289 53.0
SHD3_k127_265720_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1032.0
SHD3_k127_265720_1 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005869 524.0
SHD3_k127_265720_10 EVE domain - - - 0.000000000000000000000000000000000000001178 152.0
SHD3_k127_265720_12 Redoxin K02199 - - 0.000000000000000000000000000000000008852 147.0
SHD3_k127_265720_13 - - - - 0.00000000000000000000000002855 115.0
SHD3_k127_265720_14 Protein of unknown function (DUF433) - - - 0.000000000000000001022 90.0
SHD3_k127_265720_15 HD domain - - - 0.0000000000113 68.0
SHD3_k127_265720_16 WD-40 repeat K20332 - - 0.00000005744 64.0
SHD3_k127_265720_17 integral membrane protein - - - 0.00008356 55.0
SHD3_k127_265720_18 endonuclease activity K07451 - - 0.0003356 53.0
SHD3_k127_265720_2 PFAM NAD dependent epimerase dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 484.0
SHD3_k127_265720_3 Signal transduction histidine kinase K13598 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006345 459.0
SHD3_k127_265720_4 TGS domain K06944 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 305.0
SHD3_k127_265720_5 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000002176 267.0
SHD3_k127_265720_6 Belongs to the glycosyl hydrolase 18 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008161 250.0
SHD3_k127_265720_7 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000005517 201.0
SHD3_k127_265720_8 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000000000001617 188.0
SHD3_k127_265720_9 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000123 163.0
SHD3_k127_2662358_0 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 482.0
SHD3_k127_2662358_1 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000000000000000000000000000000000000001591 194.0
SHD3_k127_2662358_2 - - - - 0.0000002259 63.0
SHD3_k127_2662358_3 deoxyhypusine monooxygenase activity - - - 0.0007315 52.0
SHD3_k127_2664380_0 Two component regulator propeller - - - 2.131e-221 706.0
SHD3_k127_2664380_1 translation initiation factor activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004864 600.0
SHD3_k127_2664380_10 lipopolysaccharide transmembrane transporter activity K06178,K07058 - 5.4.99.22 0.00000000000000000000000000000002731 139.0
SHD3_k127_2664380_11 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000001482 139.0
SHD3_k127_2664380_12 membrane K08988 - - 0.0000000000000000000000000004107 123.0
SHD3_k127_2664380_14 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.00000000000000004506 96.0
SHD3_k127_2664380_15 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000001639 74.0
SHD3_k127_2664380_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000968 428.0
SHD3_k127_2664380_3 Periplasmic binding protein domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003909 393.0
SHD3_k127_2664380_4 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 337.0
SHD3_k127_2664380_5 - - - - 0.0000000000000000000000000000000000000000000000000000000004136 209.0
SHD3_k127_2664380_6 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000002691 205.0
SHD3_k127_2664380_7 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000000004313 199.0
SHD3_k127_2664380_8 TPM domain K06872 - - 0.000000000000000000000000000000000000000000008775 172.0
SHD3_k127_2664380_9 Nacht domain - - - 0.000000000000000000000000000000000000313 161.0
SHD3_k127_2686309_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1209.0
SHD3_k127_2686309_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 475.0
SHD3_k127_2686309_2 Beta-galactosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005833 277.0
SHD3_k127_2686309_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000006833 220.0
SHD3_k127_2691480_0 repeat protein - - - 2.469e-299 936.0
SHD3_k127_2691480_1 Cupin domain - - - 0.0000000000000000000000000000000000009777 145.0
SHD3_k127_2691480_2 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.00008862 53.0
SHD3_k127_2692137_0 HTH-like domain K07497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 323.0
SHD3_k127_2692137_1 DNA integration K14059 - - 0.00000000000000000000000000000000000000000000000000009439 196.0
SHD3_k127_2692137_2 40-residue YVTN family beta-propeller repeat protein - - - 0.000000000000000000000000000000000000000000002132 189.0
SHD3_k127_2692137_3 NHL repeat containing protein - - - 0.000000000000000000000000000000006445 149.0
SHD3_k127_2692137_4 PFAM transposase IS3 IS911 family protein K07483 - - 0.00000000000000000000000000001575 120.0
SHD3_k127_2692137_5 transposition K07497 - - 0.00000000000000000000000000004257 119.0
SHD3_k127_2692137_6 cellulose binding - - - 0.0000000001097 76.0
SHD3_k127_2692137_7 amine dehydrogenase activity - - - 0.00009613 48.0
SHD3_k127_2700362_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006987 562.0
SHD3_k127_2700362_1 Flagellar Motor Protein K11892 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009187 492.0
SHD3_k127_2700362_11 PIN domain - - - 0.000000000000000000000000000343 119.0
SHD3_k127_2700362_12 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.0000000000000000000000005475 111.0
SHD3_k127_2700362_13 amine dehydrogenase activity - - - 0.00000000000000000000005505 115.0
SHD3_k127_2700362_14 PFAM Ethyl tert-butyl ether degradation EthD - - - 0.000000000000000000717 95.0
SHD3_k127_2700362_15 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000001103 63.0
SHD3_k127_2700362_16 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00001442 58.0
SHD3_k127_2700362_17 FecR protein - - - 0.0005807 52.0
SHD3_k127_2700362_18 Ribbon-helix-helix protein, copG family - - - 0.0008324 47.0
SHD3_k127_2700362_2 Belongs to the glycosyl hydrolase 8 (cellulase D) family K15531 - 3.2.1.156 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 412.0
SHD3_k127_2700362_3 PFAM Alanine dehydrogenase PNT, C-terminal domain K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 366.0
SHD3_k127_2700362_4 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009538 304.0
SHD3_k127_2700362_5 Fe-S oxidoreductases K22226 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003731 287.0
SHD3_k127_2700362_6 - - - - 0.000000000000000000000000000000000000000000000000000000002732 213.0
SHD3_k127_2700362_7 - - - - 0.0000000000000000000000000000000000000000000000004534 181.0
SHD3_k127_2700362_9 oxidoreductase activity K07114 - - 0.000000000000000000000000000000000000008959 164.0
SHD3_k127_2705328_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.0000000000000000000000000000000000000000006064 162.0
SHD3_k127_2705328_2 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000001308 61.0
SHD3_k127_2713746_0 Aldo Keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 296.0
SHD3_k127_2713746_1 AAA ATPase domain - - - 0.000000000000000000000000000000000000003203 170.0
SHD3_k127_2713746_2 cellulose binding - - - 0.0000000000000000000388 101.0
SHD3_k127_2724702_0 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 439.0
SHD3_k127_2724702_1 UbiA prenyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000809 357.0
SHD3_k127_2724702_2 Belongs to the CinA family K03742,K03743 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071 334.0
SHD3_k127_2724702_3 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000003416 269.0
SHD3_k127_2724702_4 CAAX protease self-immunity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006239 258.0
SHD3_k127_2724702_5 PFAM Formylglycine-generating sulfatase enzyme K08884,K12132,K18912 - 1.14.99.50,2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000904 243.0
SHD3_k127_2724702_6 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000006403 206.0
SHD3_k127_2724702_7 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008104,GO:0008150,GO:0009966,GO:0010646,GO:0010738,GO:0023051,GO:0033036,GO:0034237,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051018,GO:0051179,GO:0065007,GO:1902531 3.1.4.58 0.00000000000000001537 93.0
SHD3_k127_2724731_0 Beta-ketoacyl synthase, C-terminal domain K00647,K09458 - 2.3.1.179,2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004012 486.0
SHD3_k127_2724731_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 403.0
SHD3_k127_2724731_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 345.0
SHD3_k127_2724731_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 314.0
SHD3_k127_2724731_4 - - - - 0.000000000000000000000000000000000000000000000000000003464 195.0
SHD3_k127_2724731_5 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000007553 196.0
SHD3_k127_2724731_6 - - - - 0.000000000000000000000000000000000000009785 146.0
SHD3_k127_2724731_7 - - - - 0.00000000000000000003913 91.0
SHD3_k127_2724731_8 Phosphopantetheine attachment site K02078 - - 0.00000000000000000009802 92.0
SHD3_k127_2724731_9 Putative transposase - - - 0.0000000001121 70.0
SHD3_k127_2733815_0 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008321 499.0
SHD3_k127_2733815_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000003355 162.0
SHD3_k127_2733815_2 cell envelope-related transcriptional attenuator - - - 0.000000000000000000000000000000000000009211 156.0
SHD3_k127_2733815_3 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000002358 84.0
SHD3_k127_2733815_4 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000008499 57.0
SHD3_k127_2763315_0 - - - - 0.000000000000000000004689 100.0
SHD3_k127_2763315_1 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000001799 93.0
SHD3_k127_2763315_2 Carbohydrate binding module (family 6) - - - 0.00003322 57.0
SHD3_k127_2765356_0 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 299.0
SHD3_k127_2765356_1 Peptidase family U32 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000172 291.0
SHD3_k127_2795051_0 Alpha-amylase domain K05343 - 3.2.1.1,5.4.99.16 0.0 1264.0
SHD3_k127_2795051_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147,K12573 - 3.1.13.1 2.499e-217 706.0
SHD3_k127_2795051_2 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 3.678e-201 651.0
SHD3_k127_2795051_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002332 379.0
SHD3_k127_2795051_4 Endoglucanase K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 383.0
SHD3_k127_2795051_5 short-chain dehydrogenase reductase SDR K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001115 277.0
SHD3_k127_2795051_7 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000004862 179.0
SHD3_k127_2795051_8 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.00000000000002274 72.0
SHD3_k127_2809786_0 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 557.0
SHD3_k127_2809786_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 493.0
SHD3_k127_2809786_2 zinc-ribbon domain - - - 0.0000000000000000000000000000000000000000000001093 188.0
SHD3_k127_2809786_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000002151 152.0
SHD3_k127_2814188_0 Glycoside-hydrolase family GH114 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 400.0
SHD3_k127_2814188_1 Cellulase N-terminal ig-like domain K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000002625 224.0
SHD3_k127_2814188_3 FecR protein - - - 0.0000000000000000000000000000002762 136.0
SHD3_k127_2814188_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000003357 90.0
SHD3_k127_2825966_0 Glycosyl hydrolases family 31 K01811 - 3.2.1.177 1.135e-295 919.0
SHD3_k127_2825966_1 ABC transporter - - - 1.059e-233 734.0
SHD3_k127_2825966_2 Belongs to the IlvD Edd family K01687 - 4.2.1.9 5.678e-211 670.0
SHD3_k127_2825966_3 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004442 417.0
SHD3_k127_2825966_4 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 383.0
SHD3_k127_2825966_5 PFAM Type II IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000001393 254.0
SHD3_k127_2825966_6 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000003006 169.0
SHD3_k127_2825966_7 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000001136 79.0
SHD3_k127_2835244_0 Cys/Met metabolism PLP-dependent enzyme K01739,K01758,K01760,K17217 - 2.5.1.48,4.4.1.1,4.4.1.2,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003772 497.0
SHD3_k127_2835244_1 OmpA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 430.0
SHD3_k127_2835244_2 Transcriptional regulator K10918 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002469 273.0
SHD3_k127_2835244_3 TIGRFAM GTP cyclohydrolase I K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000005637 235.0
SHD3_k127_2835244_4 Enoyl-(Acyl carrier protein) reductase K03793 - 1.5.1.33 0.000000000000000000000000000000000000000000000000000000000009755 214.0
SHD3_k127_2835244_5 Dihydroneopterin aldolase - - - 0.0000000000000000000000000000000000004904 145.0
SHD3_k127_2835244_6 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633,K07589 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008719,GO:0009987,GO:0016853,GO:0019752,GO:0034641,GO:0042558,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0071704,GO:1901360,GO:1901564 1.13.11.81,4.1.2.25,5.1.99.7,5.1.99.8 0.0000000000000000000000000000009076 132.0
SHD3_k127_2835244_7 Domain of unknown function (4846) - - - 0.0004335 47.0
SHD3_k127_2835244_8 Bacterial regulatory protein, Fis family K07713 - - 0.0004424 45.0
SHD3_k127_2844258_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 571.0
SHD3_k127_2844258_1 Domain of unknown function (DUF4398) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000688 241.0
SHD3_k127_2844258_2 - - - - 0.000000000000000000000000000002068 130.0
SHD3_k127_2844258_3 Domain of unknown function (DUF4398) - - - 0.0000000000001949 75.0
SHD3_k127_2880608_0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K01214 - 3.2.1.68 2.488e-319 992.0
SHD3_k127_2880608_1 Belongs to the glycosyl hydrolase family 6 - - - 8.093e-231 732.0
SHD3_k127_2880608_10 - - - - 0.00000000000000000000000000000000000523 142.0
SHD3_k127_2880608_11 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000003676 138.0
SHD3_k127_2880608_12 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000002849 130.0
SHD3_k127_2880608_13 kinase activity K01006,K01007,K22424 - 2.7.3.13,2.7.9.1,2.7.9.2 0.00000000000000000000000000001889 134.0
SHD3_k127_2880608_14 Belongs to the glycosyl hydrolase 57 family - - - 0.00000000000000000000000000822 128.0
SHD3_k127_2880608_15 Source PGD - - - 0.00000000000000000001473 100.0
SHD3_k127_2880608_17 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000003434 87.0
SHD3_k127_2880608_18 Protein of unknown function (DUF3175) - - - 0.0000000000792 72.0
SHD3_k127_2880608_19 - - - - 0.000000001512 64.0
SHD3_k127_2880608_2 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002119 469.0
SHD3_k127_2880608_21 GNAT family acetyltransferase - - - 0.00002196 55.0
SHD3_k127_2880608_23 ribonuclease BN K07058 - - 0.0008318 51.0
SHD3_k127_2880608_3 Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 429.0
SHD3_k127_2880608_4 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K05825 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 381.0
SHD3_k127_2880608_5 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009667 299.0
SHD3_k127_2880608_6 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000861 266.0
SHD3_k127_2880608_7 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000008442 244.0
SHD3_k127_2880608_8 Belongs to the glycosyl hydrolase 43 family K06113 - 3.2.1.99 0.000000000000000000000000000000000000000000006775 166.0
SHD3_k127_2880608_9 - - - - 0.0000000000000000000000000000000000000003801 155.0
SHD3_k127_2886614_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 443.0
SHD3_k127_2886614_1 Male sterility protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005843 323.0
SHD3_k127_2886614_2 KR domain K07124 - - 0.0000000000000000000000000000000000000000000000000003379 202.0
SHD3_k127_2886614_3 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000000000000001076 188.0
SHD3_k127_2886614_4 ERG2 and Sigma1 receptor like protein K20719 - - 0.00000000000000000000000000000000000000002496 164.0
SHD3_k127_2886614_5 succinate dehydrogenase - - - 0.00000000000000000000000000005184 132.0
SHD3_k127_2901847_0 PFAM Dockerin type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 470.0
SHD3_k127_2901847_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005713 437.0
SHD3_k127_2901847_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019 316.0
SHD3_k127_2901847_3 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.0000000000000000000000000000000000000000002886 174.0
SHD3_k127_2901847_4 Winged helix-turn-helix DNA-binding - - - 0.000000000000000000000000000001792 124.0
SHD3_k127_2901847_5 Carboxylesterase family K01066 - - 0.000003207 54.0
SHD3_k127_2914795_0 Belongs to the heat shock protein 70 family - - - 0.0 1019.0
SHD3_k127_2914795_1 Diguanylate cyclase - - - 1.211e-213 686.0
SHD3_k127_2914795_2 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 445.0
SHD3_k127_2914795_3 Protein kinase domain K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000457 353.0
SHD3_k127_2914795_4 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 340.0
SHD3_k127_2914795_5 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000002069 213.0
SHD3_k127_2914795_6 Protein tyrosine kinase - - - 0.000000000000000000000000000000000000000000000006251 194.0
SHD3_k127_2914795_8 Methyltransferase K00587 - 2.1.1.100 0.000000000000000000002015 96.0
SHD3_k127_291746_0 phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000004923 265.0
SHD3_k127_291746_1 Histidine kinase - - - 0.00000000000000004911 96.0
SHD3_k127_291746_2 Carbohydrate family 9 binding domain-like - - - 0.0000000000099 72.0
SHD3_k127_291746_3 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.0000004448 58.0
SHD3_k127_2919574_0 Trehalase - - - 7.802e-223 713.0
SHD3_k127_2919574_1 Domain of unknown function (DUF4215) - - - 4.136e-217 719.0
SHD3_k127_2919574_10 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.0000000002039 64.0
SHD3_k127_2919574_11 C4-dicarboxylate transporter malic acid transport protein - - - 0.0000000008987 62.0
SHD3_k127_2919574_12 Voltage-dependent anion channel - - - 0.000001428 55.0
SHD3_k127_2919574_2 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 361.0
SHD3_k127_2919574_3 Phosphoesterase family K01114 - 3.1.4.3 0.00000000000000000000000000000000000000000000000000000000001152 225.0
SHD3_k127_2919574_8 ECF sigma factor K03088 - - 0.000000000000000001959 95.0
SHD3_k127_2919574_9 Tetratricopeptide repeat - - - 0.000000000000000002797 97.0
SHD3_k127_2923045_0 Periplasmic protein TonB links inner and outer membranes - - - 6.528e-202 658.0
SHD3_k127_2923045_1 ABC-type dipeptide transport system periplasmic component K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000253 552.0
SHD3_k127_2923045_2 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000126 230.0
SHD3_k127_2923045_3 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000002408 222.0
SHD3_k127_2923045_5 - - - - 0.000000000000000000000003565 113.0
SHD3_k127_2923045_6 Bacterial PH domain - - - 0.000001185 54.0
SHD3_k127_2923045_7 Glycosyl hydrolase family 45 - - - 0.00003638 56.0
SHD3_k127_2923045_8 Transglycosylase SLT domain - - - 0.00009669 54.0
SHD3_k127_2923045_9 Alpha/beta hydrolase family K00433 - 1.11.1.10 0.0006984 51.0
SHD3_k127_2930132_1 Homologues of snake disintegrins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 332.0
SHD3_k127_2930132_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000005483 153.0
SHD3_k127_2930132_4 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.000000000000000000000000000006067 122.0
SHD3_k127_2930132_5 Helix-turn-helix XRE-family like proteins K21498 - - 0.0000000000000000000008514 98.0
SHD3_k127_293607_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1286.0
SHD3_k127_293607_1 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009601 511.0
SHD3_k127_293607_10 Insulinase (Peptidase family M16) K00960,K07263,K07623 - 2.7.7.6 0.00000000000005529 86.0
SHD3_k127_293607_11 Alpha-tubulin suppressor and related RCC1 domain-containing proteins - - - 0.00000000001718 75.0
SHD3_k127_293607_12 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000000005494 67.0
SHD3_k127_293607_13 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0002837 50.0
SHD3_k127_293607_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004099 488.0
SHD3_k127_293607_3 TIGRFAM Hydrogenase accessory protein HypB K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 292.0
SHD3_k127_293607_4 xyloglucan:xyloglucosyl transferase activity K01186,K12373,K20830 - 3.2.1.178,3.2.1.18,3.2.1.52 0.00000000000000000000000000000000000000000000000000000001358 212.0
SHD3_k127_293607_5 Putative cyclase K07130 - 3.5.1.9 0.00000000000000000000000000000000000000004018 160.0
SHD3_k127_293607_6 GHMP kinase K05305 - 2.7.1.52 0.000000000000000000000093 105.0
SHD3_k127_293607_7 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.0000000000000000228 95.0
SHD3_k127_293607_8 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000000000000266 79.0
SHD3_k127_293607_9 Domain of Unknown Function (DUF350) - - - 0.000000000000003707 84.0
SHD3_k127_2940817_0 SNF2 Helicase protein - - - 0.0 1230.0
SHD3_k127_2940817_1 Parallel beta-helix repeats - - - 8.09e-202 653.0
SHD3_k127_2940817_2 SWIM zinc finger - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 345.0
SHD3_k127_2940817_3 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.0000000000000000000000000000000000002097 147.0
SHD3_k127_2940817_4 Tetratricopeptide repeat - - - 0.0000000000000003568 91.0
SHD3_k127_2943559_0 serine threonine protein kinase K08884,K12132 - 2.7.11.1 2.746e-274 870.0
SHD3_k127_2943559_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008987 577.0
SHD3_k127_2943559_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 447.0
SHD3_k127_2943559_3 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 361.0
SHD3_k127_2943559_4 Protein kinase domain K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 341.0
SHD3_k127_2943559_5 oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005378 271.0
SHD3_k127_2943559_6 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008607 259.0
SHD3_k127_2943559_8 FHA domain - - - 0.00000000000000000000000000000000000000000000000000000000006458 213.0
SHD3_k127_2943559_9 Forkhead associated domain - - - 0.00000000000000000000000000000007913 135.0
SHD3_k127_2945604_0 - - - - 0.0000000000000000000000000000000000000000000000001978 202.0
SHD3_k127_2945604_1 DIM6 NTAB family - - - 0.0000000000000000000000000000000000000000000003036 173.0
SHD3_k127_2945604_2 amino acid K03294,K19540 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006040,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0022804,GO:0022857,GO:0030389,GO:0030392,GO:0030393,GO:0031224,GO:0031226,GO:0034220,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046348,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098656,GO:1901135,GO:1901136,GO:1901281,GO:1901564,GO:1901565,GO:1901575,GO:1902475,GO:1903825,GO:1905039 - 0.000000000000000000000000008504 114.0
SHD3_k127_2945604_3 Serine/threonine phosphatases, family 2C, catalytic domain K01090 - 3.1.3.16 0.000000000000415 70.0
SHD3_k127_2951418_0 CoA-substrate-specific enzyme activase - - - 0.0 1433.0
SHD3_k127_2951418_1 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004152 539.0
SHD3_k127_2951418_2 PFAM Isoprenylcysteine carboxyl methyltransferase - - - 0.00000000000000000000000000000000004831 151.0
SHD3_k127_2951418_3 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000005312 95.0
SHD3_k127_2951418_4 protein import K01179 - 3.2.1.4 0.00000000000000002911 92.0
SHD3_k127_2951418_5 NmrA-like family - - - 0.000000001414 65.0
SHD3_k127_2951418_7 Limonene-1,2-epoxide hydrolase catalytic domain K06893 - - 0.000392 44.0
SHD3_k127_2952984_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009384 609.0
SHD3_k127_2952984_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005995 563.0
SHD3_k127_2952984_10 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000006767 214.0
SHD3_k127_2952984_11 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000001373 208.0
SHD3_k127_2952984_12 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000003325 195.0
SHD3_k127_2952984_13 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000001107 193.0
SHD3_k127_2952984_14 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000001564 191.0
SHD3_k127_2952984_15 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000002675 194.0
SHD3_k127_2952984_16 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000259 183.0
SHD3_k127_2952984_17 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000004168 182.0
SHD3_k127_2952984_18 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000000000000000000000002884 174.0
SHD3_k127_2952984_19 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000008151 171.0
SHD3_k127_2952984_2 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007547 439.0
SHD3_k127_2952984_20 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000002008 168.0
SHD3_k127_2952984_21 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000154 155.0
SHD3_k127_2952984_22 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000001199 127.0
SHD3_k127_2952984_23 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000006875 123.0
SHD3_k127_2952984_24 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000003879 109.0
SHD3_k127_2952984_25 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000001147 100.0
SHD3_k127_2952984_26 Ribosomal protein L30 K02907 - - 0.0000000000000001445 87.0
SHD3_k127_2952984_27 MORN repeat variant - - - 0.0000000000000001968 91.0
SHD3_k127_2952984_28 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000000008832 74.0
SHD3_k127_2952984_29 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000315 72.0
SHD3_k127_2952984_3 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 403.0
SHD3_k127_2952984_30 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000004122 62.0
SHD3_k127_2952984_31 Belongs to the universal ribosomal protein uL29 family K02904 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000003838 68.0
SHD3_k127_2952984_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004342 306.0
SHD3_k127_2952984_5 Forms part of the polypeptide exit tunnel K02926 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002432 269.0
SHD3_k127_2952984_6 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001025 255.0
SHD3_k127_2952984_7 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000002246 252.0
SHD3_k127_2952984_8 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000001295 245.0
SHD3_k127_2952984_9 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000002259 216.0
SHD3_k127_2970323_0 polysaccharide catabolic process K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 329.0
SHD3_k127_2970323_1 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002749 310.0
SHD3_k127_2970323_2 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001293 280.0
SHD3_k127_2970323_3 Preprotein translocase SecG subunit K03075 - - 0.000000000000000326 86.0
SHD3_k127_2972078_0 Family membership K08884 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 438.0
SHD3_k127_2972078_1 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000008078 228.0
SHD3_k127_2972078_3 Calcineurin-like phosphoesterase - - - 0.000000000000000000000005323 115.0
SHD3_k127_2972078_4 - - - - 0.000002135 52.0
SHD3_k127_2978938_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1037.0
SHD3_k127_2978938_1 COG0188 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) A subunit K02469 - 5.99.1.3 2.536e-300 940.0
SHD3_k127_2978938_2 COG0187 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) B subunit K02470,K02622 - 5.99.1.3 0.0000000000000000000000000000000000000000000000459 171.0
SHD3_k127_2985268_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 5.345e-309 955.0
SHD3_k127_2985268_1 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 2.394e-215 697.0
SHD3_k127_2985268_10 YoaP-like - - - 0.0000001868 61.0
SHD3_k127_2985268_12 Low-density lipoprotein receptor domain class A - - - 0.00062 52.0
SHD3_k127_2985268_2 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 407.0
SHD3_k127_2985268_3 Belongs to the N(4) N(6)-methyltransferase family K00571 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 340.0
SHD3_k127_2985268_4 Sua5 YciO YrdC YwlC family protein K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 303.0
SHD3_k127_2985268_5 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001186 291.0
SHD3_k127_2985268_6 Penicillin-insensitive murein endopeptidase K07261 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005824 272.0
SHD3_k127_2985268_9 TIGRFAM intracellular protease, PfpI family K03152,K05520 - 3.5.1.124 0.0000000000000000000000004086 107.0
SHD3_k127_2987468_0 Belongs to the aldehyde dehydrogenase family K07248,K13821 - 1.2.1.21,1.2.1.22,1.2.1.88,1.5.5.2 5.461e-217 688.0
SHD3_k127_2987468_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000007424 231.0
SHD3_k127_2987468_2 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001784 233.0
SHD3_k127_2987468_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000008565 154.0
SHD3_k127_2987468_4 - - - - 0.00000000001673 73.0
SHD3_k127_2987468_5 domain, Protein - - - 0.0000000008143 70.0
SHD3_k127_2987676_0 HD domain - - - 3.894e-218 689.0
SHD3_k127_2987676_1 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008186 305.0
SHD3_k127_2987676_2 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000006501 261.0
SHD3_k127_2987676_3 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000003607 189.0
SHD3_k127_2987676_4 Belongs to the sigma-70 factor family K02405 - - 0.0000000000000000000000000000000000003441 153.0
SHD3_k127_2987676_5 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000005382 100.0
SHD3_k127_3000630_0 AcrB/AcrD/AcrF family K15726 - - 2.593e-294 935.0
SHD3_k127_3000630_1 DNA-binding response regulator - - - 7.704e-194 619.0
SHD3_k127_3000630_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 332.0
SHD3_k127_3000630_3 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003364 260.0
SHD3_k127_3000630_4 protein histidine kinase activity - - - 0.0000000000000000000000000000000000000000000000000000202 203.0
SHD3_k127_3000630_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.00000000000000000000000000000000000000001623 168.0
SHD3_k127_3000630_6 cheY-homologous receiver domain - - - 0.0000000000000000000000004924 121.0
SHD3_k127_3000630_7 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K15725 - - 0.00000000000000000000007776 112.0
SHD3_k127_3000630_8 - - - - 0.0002214 49.0
SHD3_k127_3000947_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 410.0
SHD3_k127_3000947_1 Nadph-dependent fmn reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006967 314.0
SHD3_k127_3000947_2 Serine carboxypeptidase - - - 0.0000000000000000000000000000008819 141.0
SHD3_k127_3000947_3 NAD(P)H-binding - - - 0.00000000000000000000000008983 113.0
SHD3_k127_3000947_4 Conserved repeat domain - - - 0.00000000000000000000005941 116.0
SHD3_k127_3004652_0 transaminase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 513.0
SHD3_k127_3004652_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009504 459.0
SHD3_k127_3004652_2 Exodeoxyribonuclease V, gamma subunit K03583 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006638 399.0
SHD3_k127_3004652_3 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003209 317.0
SHD3_k127_3004652_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000003498 172.0
SHD3_k127_3004652_5 Tetratricopeptide repeat - - - 0.0000000000000000000002064 109.0
SHD3_k127_3004652_6 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000005783 57.0
SHD3_k127_3004652_7 protein kinase activity - - - 0.00001252 58.0
SHD3_k127_3004652_8 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.00006289 46.0
SHD3_k127_300592_0 Starch synthase catalytic domain K00703 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009011,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 543.0
SHD3_k127_300592_1 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.0000000000000000000000000000000000000000000000003413 180.0
SHD3_k127_300592_2 PHP domain protein K07053 - 3.1.3.97 0.00000000000000000000000000000000000000001338 165.0
SHD3_k127_300592_3 Protein of unknown function (DUF861) K06995 - - 0.00000000000000000000000000000000000006955 146.0
SHD3_k127_3006385_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000776 563.0
SHD3_k127_3006385_1 Putative citrate transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 374.0
SHD3_k127_3006385_2 dipeptide transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 349.0
SHD3_k127_3010355_0 Family membership K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009604 353.0
SHD3_k127_3010355_1 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003994,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0008198,GO:0009060,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0015980,GO:0016020,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0030312,GO:0030350,GO:0032787,GO:0040007,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046459,GO:0046872,GO:0046914,GO:0047456,GO:0048037,GO:0050896,GO:0051536,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:1901363 4.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 284.0
SHD3_k127_3010355_2 PFAM Rhomboid family K19225 - 3.4.21.105 0.00000000000000000000000000000000000000000000000000001134 213.0
SHD3_k127_3010355_3 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000003283 189.0
SHD3_k127_3010355_4 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000003789 60.0
SHD3_k127_3010355_5 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.00001749 48.0
SHD3_k127_3016359_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 9.024e-225 707.0
SHD3_k127_3016359_1 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 513.0
SHD3_k127_3016359_2 Fibronectin type III-like domain K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009654 365.0
SHD3_k127_3016359_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002818 277.0
SHD3_k127_3016359_4 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000001 248.0
SHD3_k127_3016359_5 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000205 91.0
SHD3_k127_3016359_6 Right handed beta helix region K01406 - 3.4.24.40 0.000000000001159 81.0
SHD3_k127_3019565_0 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 410.0
SHD3_k127_3019565_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001382 269.0
SHD3_k127_3019565_2 Amino acid permease - - - 0.0000000000000000000000000000000000000000000000000000000006147 209.0
SHD3_k127_3019565_3 C4-type zinc ribbon domain K07164 - - 0.000000000000000000000000000000000000000000000000000006439 200.0
SHD3_k127_3023130_0 SEC-C motif K06871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004444 254.0
SHD3_k127_3023130_1 leucine binding - - - 0.0000000000000000000000000000000000000000000000000000000000002499 226.0
SHD3_k127_3023130_2 thought to play an important role in the mineralization of sulfates catalytic activity a phenol sulfate H2O a phenol sulfate K01130 GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004065,GO:0004098,GO:0005488,GO:0005509,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005783,GO:0005788,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006687,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0008484,GO:0009987,GO:0012505,GO:0016192,GO:0016787,GO:0016788,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042582,GO:0043167,GO:0043169,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046872,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0097708,GO:0099503,GO:1901135,GO:1901564,GO:1903509 3.1.6.1 0.0000000000000000000000006275 104.0
SHD3_k127_3023130_3 Domain of unknown function (DUF202) K00389 - - 0.0000000000001138 78.0
SHD3_k127_3051539_0 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 453.0
SHD3_k127_3051539_1 myo-inosose-2 dehydratase activity K03335 - 4.2.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000527 302.0
SHD3_k127_3051539_2 SERine Proteinase INhibitors K13963 - - 0.0000000000000000000000000000000000000000000000000000000000000006636 233.0
SHD3_k127_3051539_3 Histidine kinase K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000001249 188.0
SHD3_k127_3054920_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 5.42e-218 680.0
SHD3_k127_3054920_1 Sigma-54 interaction domain K02584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 604.0
SHD3_k127_3054920_11 oxidoreductase activity K07114 - - 0.00001401 57.0
SHD3_k127_3054920_2 oligosaccharyl transferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005117 469.0
SHD3_k127_3054920_3 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 348.0
SHD3_k127_3054920_4 Aldo Keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007739 326.0
SHD3_k127_3054920_5 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004763 263.0
SHD3_k127_3054920_6 organic phosphonate transport K02044 - - 0.00000000000000000000000000000000000000000000000000000000003212 216.0
SHD3_k127_3054920_7 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000009677 215.0
SHD3_k127_3066609_0 B12 binding domain K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.0 1268.0
SHD3_k127_3066609_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 GO:0000271,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0016051,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901576 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 527.0
SHD3_k127_3066609_2 Protein of unknown function (DUF2786) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009638 398.0
SHD3_k127_3066609_3 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006115 351.0
SHD3_k127_3066609_4 Lysylphosphatidylglycerol synthase TM region - - - 0.000000000000000000000000000000000000000000000000000000007288 214.0
SHD3_k127_3071095_0 Fe-S oxidoreductases K22226 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 411.0
SHD3_k127_3071095_1 Pectate lyase superfamily protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008746 353.0
SHD3_k127_3071095_10 acetyltransferase K03802 - 6.3.2.29,6.3.2.30 0.0000007625 51.0
SHD3_k127_3071095_11 zinc-ribbon domain - - - 0.00006755 56.0
SHD3_k127_3071095_2 Bacterial protein of unknown function (DUF899) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 316.0
SHD3_k127_3071095_3 Family membership K08884 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 323.0
SHD3_k127_3071095_4 Belongs to the glycosyl hydrolase family 6 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 309.0
SHD3_k127_3071095_5 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000003276 204.0
SHD3_k127_3071095_6 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000002333 154.0
SHD3_k127_3071095_7 cysteine-type peptidase activity K21471,K21473,K21687 - - 0.0000000000000000000000000000000009962 142.0
SHD3_k127_3071095_9 Hydrophobic seed protein - - - 0.0000001066 62.0
SHD3_k127_3075420_0 Gametolysin peptidase M11 - - - 0.000000000000000000000000000000009325 146.0
SHD3_k127_3075420_1 Phospholipase/Carboxylesterase - - - 0.000000000000000000003634 106.0
SHD3_k127_3075420_2 Bacterial antitoxin of type II TA system, VapB - - - 0.0000000001017 64.0
SHD3_k127_3075420_3 nuclease activity - - - 0.000000001045 67.0
SHD3_k127_3078128_0 Domain present in PSD-95, Dlg, and ZO-1/2. K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 364.0
SHD3_k127_3078128_1 Two component transcriptional regulator, winged helix family K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005695 307.0
SHD3_k127_3078128_2 cheY-homologous receiver domain - - - 0.000000000000000000000000000002337 127.0
SHD3_k127_3078128_3 - - - - 0.0000000000009628 78.0
SHD3_k127_3081738_0 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007546 338.0
SHD3_k127_3081738_1 Alpha-L-arabinofuranosidase B (ABFB) domain K01193 - 3.2.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 291.0
SHD3_k127_3081738_2 Parallel beta-helix repeats - - - 0.000000000000000000007252 97.0
SHD3_k127_3081738_3 PFAM IstB domain protein ATP-binding protein - - - 0.0000000000000000006596 87.0
SHD3_k127_3081836_1 PFAM natural resistance-associated macrophage protein K03322 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005678 523.0
SHD3_k127_3081836_2 membrane organization - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 304.0
SHD3_k127_3081836_3 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003321 272.0
SHD3_k127_3081836_4 Belongs to the pseudouridine synthase RluA family K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000000000000000000000000000000000126 259.0
SHD3_k127_3081836_5 DNA helicase K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000004693 202.0
SHD3_k127_3081836_6 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000000000000000000000000001083 201.0
SHD3_k127_3081836_7 Iron-regulated protein - - - 0.000002148 60.0
SHD3_k127_3082259_0 stress-induced mitochondrial fusion - - - 0.0 1110.0
SHD3_k127_3082259_1 the aldose L-fucose into the corresponding ketose L-fuculose K01818 - 5.3.1.25,5.3.1.3 1.392e-273 853.0
SHD3_k127_3082259_2 von Willebrand factor, type A K07114 - - 7.011e-218 695.0
SHD3_k127_3082259_3 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000005194 202.0
SHD3_k127_3082259_4 - - - - 0.0000000000000000000000000032 122.0
SHD3_k127_3082259_5 amine dehydrogenase activity - - - 0.000001817 60.0
SHD3_k127_3083907_0 WD40-like Beta Propeller Repeat - - - 1e-273 876.0
SHD3_k127_3083907_1 Lipopolysaccharide kinase (Kdo/WaaP) family K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 435.0
SHD3_k127_3083907_11 PhoH-like protein K06217 - - 0.000000000000000000000000000003507 126.0
SHD3_k127_3083907_2 Cell division protein FtsI penicillin-binding protein 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002128 376.0
SHD3_k127_3083907_3 ABC transporter K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008943 334.0
SHD3_k127_3083907_4 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004895 278.0
SHD3_k127_3083907_5 Formyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007211 260.0
SHD3_k127_3083907_6 Peptidase family M23 K21471 - - 0.00000000000000000000000000000000000000000000000000000000000000000003482 252.0
SHD3_k127_3083907_7 PilZ domain - - - 0.00000000000000000000000000000000000000000000000000005209 200.0
SHD3_k127_3083907_8 pseudouridine synthase activity K06180 - 5.4.99.23 0.000000000000000000000000000000000000004026 160.0
SHD3_k127_3084094_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 363.0
SHD3_k127_3084094_1 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 362.0
SHD3_k127_3084094_10 polysaccharide catabolic process K01179 - 3.2.1.4 0.000000000001563 70.0
SHD3_k127_3084094_2 Predicted membrane protein (DUF2238) K08984 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 295.0
SHD3_k127_3084094_3 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000003583 224.0
SHD3_k127_3084094_4 Regulator of chromosome condensation (RCC1) repeat - - - 0.0000000000000000000000000000000000000000002968 175.0
SHD3_k127_3084094_5 CheR methyltransferase, SAM binding domain K00575 - 2.1.1.80 0.00000000000000000000000000000000000004592 154.0
SHD3_k127_3084094_6 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000005493 148.0
SHD3_k127_3084094_7 Two component signalling adaptor domain K03408 - - 0.000000000000000000000000000000005403 140.0
SHD3_k127_3084094_9 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0000000000000000004221 94.0
SHD3_k127_3086149_0 type IV pilus secretin PilQ K02666 - - 6.088e-287 902.0
SHD3_k127_3086149_1 pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 487.0
SHD3_k127_3086149_10 Collagen-binding surface adhesin SpaP (antigen I II family) K07337 - - 0.00000000000000000000000000000000000000000000000000000007425 203.0
SHD3_k127_3086149_11 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000000000000000000000000000000113 186.0
SHD3_k127_3086149_12 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000001183 181.0
SHD3_k127_3086149_13 Protein of unknown function (DUF3829) - - - 0.0000000000000000000000000000000000000000000002259 181.0
SHD3_k127_3086149_14 Pilus assembly protein, PilO K02664 - - 0.0000000000000000000000000000000000000000000004442 175.0
SHD3_k127_3086149_15 NAT, N-acetyltransferase, of N-acetylglutamate synthase K22478 - 2.3.1.1,2.7.2.8 0.00000000000000000000000000000000000000005855 162.0
SHD3_k127_3086149_16 SURF4 family K15977 - - 0.0000000000000000000000000000000000000005159 158.0
SHD3_k127_3086149_17 Pilus assembly protein, PilP K02665 - - 0.000000000000000000000000000000000000003069 160.0
SHD3_k127_3086149_18 PFAM oxidoreductase domain protein - - - 0.000000000000000000000000001342 125.0
SHD3_k127_3086149_19 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000000000000000000000003211 112.0
SHD3_k127_3086149_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 463.0
SHD3_k127_3086149_20 Could be involved in insertion of integral membrane proteins into the membrane K08998 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0031224,GO:0031226,GO:0032977,GO:0033036,GO:0034613,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0090150 - 0.0000000000000000000000154 111.0
SHD3_k127_3086149_21 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000001933 83.0
SHD3_k127_3086149_22 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000006664 68.0
SHD3_k127_3086149_23 HNH endonuclease - - - 0.00000306 59.0
SHD3_k127_3086149_24 Sec23/Sec24 trunk domain K14007 GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0012506,GO:0012507,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032991,GO:0033218,GO:0034622,GO:0035459,GO:0042175,GO:0042277,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0061024,GO:0065003,GO:0071840,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827 - 0.0002586 47.0
SHD3_k127_3086149_3 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007013 457.0
SHD3_k127_3086149_4 Protein conserved in bacteria K09859 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002958 432.0
SHD3_k127_3086149_5 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 388.0
SHD3_k127_3086149_6 Glyco_18 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006749 333.0
SHD3_k127_3086149_7 Cysteine-rich secretory protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008726 316.0
SHD3_k127_3086149_8 R3H domain K06346 - - 0.00000000000000000000000000000000000000000000000000000000000000001972 229.0
SHD3_k127_3086149_9 Fimbrial assembly protein (PilN) K02663 - - 0.0000000000000000000000000000000000000000000000000000000000000002397 228.0
SHD3_k127_3088774_0 Dehydratase family K01687 - 4.2.1.9 2.486e-256 800.0
SHD3_k127_3088774_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 481.0
SHD3_k127_3088774_2 Secondary thiamine-phosphate synthase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000185 245.0
SHD3_k127_3088774_3 PFAM Phosphatidylethanolamine-binding protein K06910 - - 0.000000000000000000000000000000000000000000000000000000000000000001853 233.0
SHD3_k127_3088774_5 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0033218,GO:0042277,GO:0043167,GO:0043168,GO:0043295,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0055114,GO:0072341,GO:1900750,GO:1901681 - 0.000000003643 66.0
SHD3_k127_3088774_6 - - - - 0.00000002671 64.0
SHD3_k127_3088774_7 zinc-ribbon domain - - - 0.000009197 59.0
SHD3_k127_3088774_8 SPFH domain-Band 7 family - - - 0.0003375 53.0
SHD3_k127_3091711_0 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006532 348.0
SHD3_k127_3091711_1 N-formylglutamate amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 296.0
SHD3_k127_3091711_10 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000522 121.0
SHD3_k127_3091711_11 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000000000001212 107.0
SHD3_k127_3091711_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000576 287.0
SHD3_k127_3091711_3 Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000000000003129 235.0
SHD3_k127_3091711_4 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000002752 222.0
SHD3_k127_3091711_5 SAM-dependent RNA methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000004732 220.0
SHD3_k127_3091711_7 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.000000000000000000000000000000000000000000008364 172.0
SHD3_k127_3091711_8 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000009886 141.0
SHD3_k127_3091711_9 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000002227 136.0
SHD3_k127_309314_0 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006547 569.0
SHD3_k127_309314_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009352 440.0
SHD3_k127_309314_2 polysaccharide catabolic process K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000993 265.0
SHD3_k127_309314_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001848 255.0
SHD3_k127_309314_4 serine-type endopeptidase activity - - - 0.00000000000001399 79.0
SHD3_k127_309314_5 Worm-specific repeat type 1 - GO:0002009,GO:0002165,GO:0003674,GO:0005198,GO:0005201,GO:0005575,GO:0005576,GO:0007275,GO:0007424,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007552,GO:0007560,GO:0007591,GO:0008150,GO:0008362,GO:0008587,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0022404,GO:0031012,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040003,GO:0040005,GO:0042303,GO:0042335,GO:0044421,GO:0044719,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0060429,GO:0060541,GO:0060562,GO:0065007,GO:0065008,GO:0090066 - 0.000000000003007 78.0
SHD3_k127_309314_6 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000448 68.0
SHD3_k127_3094232_0 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003057 542.0
SHD3_k127_3094232_1 FAD linked oxidases, C-terminal domain K00102,K00104 - 1.1.2.4,1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 517.0
SHD3_k127_3094232_11 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0000009244 56.0
SHD3_k127_3094232_2 Integrase core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000645 386.0
SHD3_k127_3094232_3 Glycosyl transferase family 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 344.0
SHD3_k127_3094232_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.00000000000000000000000000000000000000000000000000004447 193.0
SHD3_k127_3094232_5 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000003388 147.0
SHD3_k127_3094232_6 RF-1 domain K15034 - - 0.000000000000000000000000001143 123.0
SHD3_k127_3094232_7 Putative transposase - - - 0.00000000000000000000000002179 119.0
SHD3_k127_3107212_0 Cobalamin-independent synthase, N-terminal domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008841 446.0
SHD3_k127_3107212_1 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 321.0
SHD3_k127_3107212_2 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000002535 228.0
SHD3_k127_3107212_3 oxidoreductase activity K07114 - - 0.000003324 60.0
SHD3_k127_3109786_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 GO:0000287,GO:0003674,GO:0003824,GO:0003852,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016746,GO:0019752,GO:0030145,GO:0030955,GO:0031420,GO:0040007,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046872,GO:0046912,GO:0046914,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.3.13 6.447e-230 726.0
SHD3_k127_3109786_1 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 2.199e-212 677.0
SHD3_k127_3109786_2 Proton-conducting membrane transporter K00342 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0030964,GO:0031224,GO:0031226,GO:0032991,GO:0034220,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1902600,GO:1990204 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003721 582.0
SHD3_k127_3109786_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006192 387.0
SHD3_k127_3109786_4 Putative RNA methylase family UPF0020 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 335.0
SHD3_k127_3109786_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 326.0
SHD3_k127_3109786_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003462 296.0
SHD3_k127_3109786_7 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000000000000000001326 181.0
SHD3_k127_3109786_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000000000716 138.0
SHD3_k127_3109786_9 PFAM regulator of chromosome condensation, RCC1 - - - 0.00000003718 59.0
SHD3_k127_3110017_0 PFAM Saccharopine dehydrogenase K00290 - 1.5.1.7 1.84e-204 644.0
SHD3_k127_3110017_1 Nucleotidyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007961 335.0
SHD3_k127_3110017_2 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000000000000006424 168.0
SHD3_k127_3110017_3 Belongs to the Orn Lys Arg decarboxylase class-II family. NspC subfamily K13747 - 4.1.1.96 0.00000000000000000000000000000000001495 148.0
SHD3_k127_3111082_0 AcrB/AcrD/AcrF family K03296,K18138 - - 0.0 1290.0
SHD3_k127_3111082_1 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 320.0
SHD3_k127_3111082_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002966 311.0
SHD3_k127_3114905_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 9.263e-269 847.0
SHD3_k127_3114905_1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) - - - 3.863e-236 747.0
SHD3_k127_3114905_2 AAA ATPase domain - - - 0.0000000000000000000000000000009763 139.0
SHD3_k127_3114905_3 IgGFc binding protein - - - 0.00000000000000000000000000005865 126.0
SHD3_k127_3114905_4 mRNA catabolic process K06950 - - 0.0000000000006127 77.0
SHD3_k127_3114905_5 Lytic transglycolase K20628 - - 0.0000000001724 72.0
SHD3_k127_311576_0 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000000000000000003395 184.0
SHD3_k127_311576_1 RHS Repeat - - - 0.00000000004976 74.0
SHD3_k127_311576_2 cell adhesion - - - 0.0006045 51.0
SHD3_k127_3128457_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.0 1427.0
SHD3_k127_3128457_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1262.0
SHD3_k127_3128457_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.000000000000000000000000000000000000000000000009288 182.0
SHD3_k127_314172_0 GTP-binding protein K06207 - - 3.425e-268 838.0
SHD3_k127_314172_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 1.271e-237 749.0
SHD3_k127_314172_10 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008858 450.0
SHD3_k127_314172_11 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 429.0
SHD3_k127_314172_12 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 421.0
SHD3_k127_314172_13 oxidoreductase activity K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005446 386.0
SHD3_k127_314172_14 Oxygen tolerance - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 351.0
SHD3_k127_314172_15 RNA-DNA hybrid ribonuclease activity K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 321.0
SHD3_k127_314172_16 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009547 326.0
SHD3_k127_314172_17 Uncharacterised protein family (UPF0158) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 308.0
SHD3_k127_314172_18 isochorismatase hydrolase K08281 - 3.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005109 277.0
SHD3_k127_314172_19 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005155 280.0
SHD3_k127_314172_2 amino acid K03294 - - 3.914e-201 638.0
SHD3_k127_314172_20 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000003493 264.0
SHD3_k127_314172_21 cation diffusion facilitator family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000007305 233.0
SHD3_k127_314172_23 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000001835 246.0
SHD3_k127_314172_24 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000001739 241.0
SHD3_k127_314172_26 NUDIX domain - - - 0.000000000000000000000000000000000000000000000000000001254 197.0
SHD3_k127_314172_27 VanW like protein - - - 0.0000000000000000000000000000000000000000000000000000159 211.0
SHD3_k127_314172_28 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000003681 198.0
SHD3_k127_314172_29 - - - - 0.000000000000000000000000000000000000000001986 176.0
SHD3_k127_314172_3 AcrB/AcrD/AcrF family K07787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 632.0
SHD3_k127_314172_30 - - - - 0.0000000000000000000009844 110.0
SHD3_k127_314172_31 cation transport ATPase K01533,K17686 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.4,3.6.3.54 0.00000001255 66.0
SHD3_k127_314172_33 Phosphate regulon two-component response regulator transcription regulator protein K07657 - - 0.00000006898 63.0
SHD3_k127_314172_34 Stigma-specific protein, Stig1 - - - 0.000002822 61.0
SHD3_k127_314172_35 Stigma-specific protein, Stig1 - - - 0.000003718 61.0
SHD3_k127_314172_36 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00008133 54.0
SHD3_k127_314172_37 Protein of unknown function (DUF533) - - - 0.0001542 50.0
SHD3_k127_314172_38 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0004044 54.0
SHD3_k127_314172_4 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143 542.0
SHD3_k127_314172_5 adenosine deaminase K01488 - 3.5.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003905 521.0
SHD3_k127_314172_6 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 487.0
SHD3_k127_314172_7 Aldo Keto reductase K13315 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 468.0
SHD3_k127_314172_8 Von Willebrand factor type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 479.0
SHD3_k127_314172_9 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008657 445.0
SHD3_k127_3145791_0 hydrolase, family 3 K05349 - 3.2.1.21 1.32e-318 989.0
SHD3_k127_3158696_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1616.0
SHD3_k127_3158696_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K08244 - 2.7.9.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 554.0
SHD3_k127_3158696_2 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000006869 127.0
SHD3_k127_3158696_3 EXOIII K13288 GO:0000002,GO:0000175,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0022613,GO:0031123,GO:0031125,GO:0034470,GO:0034472,GO:0034475,GO:0034476,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360 - 0.000000000000000004726 84.0
SHD3_k127_3158696_4 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0003573 48.0
SHD3_k127_316582_0 GHKL domain K07641 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007318 331.0
SHD3_k127_316582_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 315.0
SHD3_k127_316582_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000004882 263.0
SHD3_k127_316582_3 Stringent starvation protein B K03600 - - 0.0000000000000000000000000000000000000000003965 165.0
SHD3_k127_316582_4 GHKL domain K07641 - 2.7.13.3 0.000000000000000000000000000000000001644 141.0
SHD3_k127_316582_5 zinc-ribbon domain - - - 0.00000000000000000000000000000001105 131.0
SHD3_k127_3166429_0 collagen metabolic process K08677 - - 0.00000000000000000000000000000000000000000000000000000000000000001016 256.0
SHD3_k127_3166429_1 Regulator of chromosome condensation (RCC1) repeat - - - 0.0000000000000000000000000000000000145 158.0
SHD3_k127_3166913_0 DNA polymerase K02337,K14162 - 2.7.7.7 9.411e-248 781.0
SHD3_k127_3166913_1 Domain of unknown function (DUF4388) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005918 352.0
SHD3_k127_3166913_10 Domain of unknown function (DUF4974) K07165 - - 0.00002038 57.0
SHD3_k127_3166913_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000002805 218.0
SHD3_k127_3166913_3 chlorophyll binding - - - 0.0000000000000000000000000000000000000000000000000000002583 207.0
SHD3_k127_3166913_4 histone H2A K63-linked ubiquitination K03220 - - 0.00000000000000000000000000000000255 144.0
SHD3_k127_3166913_5 FxsA cytoplasmic membrane protein K07113 - - 0.00000000000000000000000000003493 122.0
SHD3_k127_3166913_6 DNA-templated transcription, initiation K03088 - - 0.00000000000000000645 92.0
SHD3_k127_3166913_7 Histidine kinase - - - 0.0000000006467 71.0
SHD3_k127_3166913_8 Zinc metalloprotease (Elastase) - - - 0.000000008005 69.0
SHD3_k127_3170900_0 COG3119 Arylsulfatase A and related enzymes K01130 - 3.1.6.1 0.0 1310.0
SHD3_k127_3170900_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008257 432.0
SHD3_k127_3170900_2 - - - - 0.00000000000000000000000000000000000001178 156.0
SHD3_k127_3170900_3 - - - - 0.00000000000000112 85.0
SHD3_k127_3179006_0 Belongs to the glycosyl hydrolase family 6 - - - 0.000000000000000000000166 115.0
SHD3_k127_3179006_1 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.0000000000004545 73.0
SHD3_k127_3179006_2 NAD(P)H-binding - - - 0.0007058 43.0
SHD3_k127_3187470_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 313.0
SHD3_k127_3187470_1 PFAM Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000002581 260.0
SHD3_k127_3187470_2 Transcriptional regulatory protein, C terminal - - - 0.00000000000002923 87.0
SHD3_k127_3187470_3 diguanylate cyclase - - - 0.0000007894 60.0
SHD3_k127_3190405_1 Protein of unknown function (DUF4013) - - - 0.000000000000000005285 94.0
SHD3_k127_3192419_0 AMP-binding enzyme K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 366.0
SHD3_k127_3192419_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 345.0
SHD3_k127_3192419_2 Von Willebrand factor type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 334.0
SHD3_k127_3192419_3 PFAM NAD-dependent epimerase dehydratase K00091 - 1.1.1.219 0.0000000000000000000000000000002138 141.0
SHD3_k127_319347_0 Peptidase family M13 K01415,K07386 - 3.4.24.71 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 480.0
SHD3_k127_319347_1 PFAM TraB determinant protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 392.0
SHD3_k127_319347_2 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003747 350.0
SHD3_k127_319347_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000009463 247.0
SHD3_k127_319347_4 Las17-binding protein actin regulator - - - 0.000000000000000000000002817 110.0
SHD3_k127_319347_7 - - - - 0.000000000000000003324 87.0
SHD3_k127_319347_8 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 GO:0003674,GO:0003824,GO:0004150,GO:0005488,GO:0005515,GO:0016829,GO:0016830,GO:0016832,GO:0042802 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000002536 78.0
SHD3_k127_3214069_0 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004955 581.0
SHD3_k127_3214069_1 Sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 509.0
SHD3_k127_3214069_10 - - - - 0.000000000000000000000003 115.0
SHD3_k127_3214069_11 histidine kinase HAMP region domain protein - - - 0.00001609 57.0
SHD3_k127_3214069_12 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07669,K07672 - - 0.00002815 56.0
SHD3_k127_3214069_13 Domain of unknown function (DUF4388) K12132 - 2.7.11.1 0.00005128 57.0
SHD3_k127_3214069_14 Protein kinase domain K12132 - 2.7.11.1 0.0004987 51.0
SHD3_k127_3214069_2 dna methylase K00571,K07316 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 447.0
SHD3_k127_3214069_3 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005447 286.0
SHD3_k127_3214069_5 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000007482 240.0
SHD3_k127_3214069_6 Pfam Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000851 223.0
SHD3_k127_3214069_7 PFAM Transglycosylase-associated protein - - - 0.00000000000000000000000000000003296 127.0
SHD3_k127_3214069_8 PFAM Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000375 117.0
SHD3_k127_3237840_0 N-terminal domain of (some) glycogen debranching enzymes - - - 4.137e-274 859.0
SHD3_k127_3237840_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000233 265.0
SHD3_k127_3237840_2 MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003208 254.0
SHD3_k127_3237840_3 Methyltransferase, chemotaxis proteins K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000005468 187.0
SHD3_k127_3237840_4 response regulator K02481,K07713 - - 0.000000000000001985 82.0
SHD3_k127_3243752_0 Receptor K02014 - - 8.875e-316 987.0
SHD3_k127_3243752_1 Belongs to the glycosyl hydrolase 28 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004196 486.0
SHD3_k127_3243752_10 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000006997 148.0
SHD3_k127_3243752_13 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000009571 128.0
SHD3_k127_3243752_14 Transcriptional regulatory protein, C terminal K02483,K07663 - - 0.000000000000000000000005707 102.0
SHD3_k127_3243752_15 Beta-L-arabinofuranosidase, GH127 - - - 0.00000000000000004453 95.0
SHD3_k127_3243752_16 - - - - 0.00000000000000009226 91.0
SHD3_k127_3243752_17 oxidoreductase activity K07114 - - 0.00000000003222 75.0
SHD3_k127_3243752_19 Neurotransmitter-gated ion-channel ligand binding domain - - - 0.00004128 57.0
SHD3_k127_3243752_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000647 440.0
SHD3_k127_3243752_20 Chemotaxis phosphatase CheX K03409 - - 0.00006654 53.0
SHD3_k127_3243752_3 Protein kinase domain K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000606 305.0
SHD3_k127_3243752_4 Trehalose utilisation K09992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005432 287.0
SHD3_k127_3243752_5 Nitrate and nitrite sensing K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002741 291.0
SHD3_k127_3243752_6 Glycoside-hydrolase family GH114 K21006 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005886 256.0
SHD3_k127_3243752_7 PA14 domain - - - 0.000000000000000000000000000000000000000000000000000000000007628 220.0
SHD3_k127_3243752_8 Periplasmic binding protein domain K10439 - - 0.0000000000000000000000000000000000000000000000000000000003391 225.0
SHD3_k127_3243752_9 Domain of unknown function (DUF4154) - - - 0.000000000000000000000000000000000000000000000000000000004268 205.0
SHD3_k127_3263712_0 FtsX-like permease family K02004 - - 6.359e-256 816.0
SHD3_k127_3263712_1 transposase mutator type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 416.0
SHD3_k127_3263712_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005981 360.0
SHD3_k127_3263712_3 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003937 286.0
SHD3_k127_3263712_4 Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003,K05685 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002386 262.0
SHD3_k127_3263712_5 transmembrane transport K01992 - - 0.000000005637 66.0
SHD3_k127_3266964_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 578.0
SHD3_k127_3266964_1 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 359.0
SHD3_k127_3266964_3 Belongs to the serpin family K13963 - - 0.0000000000000000000004437 100.0
SHD3_k127_3266964_5 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000002056 53.0
SHD3_k127_3271635_0 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003591 281.0
SHD3_k127_3271635_1 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000000001669 169.0
SHD3_k127_3271635_2 COG3464 Transposase and inactivated derivatives - - - 0.000000000000000000000001469 108.0
SHD3_k127_3271635_4 - - - - 0.00002191 47.0
SHD3_k127_3287771_0 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 364.0
SHD3_k127_3287771_1 Nudix hydrolase K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000000003867 215.0
SHD3_k127_3287771_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000004639 169.0
SHD3_k127_3287771_3 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000003044 160.0
SHD3_k127_3287771_4 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000001832 147.0
SHD3_k127_3287771_6 TPR repeat - - - 0.0000000000002541 80.0
SHD3_k127_3289551_0 dockerin type K15924 - 3.2.1.136 0.000000000000000000000000000000000000000003357 173.0
SHD3_k127_3289551_1 WD40-like Beta Propeller Repeat - - - 0.000000000000000000008327 107.0
SHD3_k127_3289551_2 Stigma-specific protein, Stig1 - - - 0.0000000000007673 76.0
SHD3_k127_3290599_0 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 466.0
SHD3_k127_3290599_1 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007415 304.0
SHD3_k127_3290599_2 Arabinogalactan endo-beta-1,4-galactanase K01224 - 3.2.1.89 0.00000000000000000000000000000000000000000000000000000000000000000000000002002 267.0
SHD3_k127_3290599_3 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000005357 167.0
SHD3_k127_329087_0 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 369.0
SHD3_k127_329087_1 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002732 267.0
SHD3_k127_329087_3 Sigma-70, region 4 K03088 - - 0.00000001144 62.0
SHD3_k127_329087_4 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000008647 57.0
SHD3_k127_329087_5 - - - - 0.0001959 47.0
SHD3_k127_3307989_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 471.0
SHD3_k127_3307989_1 WYL domain - - - 0.00000000000000000000000000000000000000000000000001393 192.0
SHD3_k127_3307989_2 bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding - - - 0.00000000000000000000000000000000000000000000000006826 185.0
SHD3_k127_3307989_3 extracellular matrix structural constituent - - - 0.0000000000000000000000000000000000000000000000002598 202.0
SHD3_k127_3307989_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000005612 161.0
SHD3_k127_3307989_5 oxidoreductase activity K07114 - - 0.0000000000000000000000000000000001153 154.0
SHD3_k127_3307989_6 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000001205 117.0
SHD3_k127_3307989_7 HicA toxin of bacterial toxin-antitoxin, - - - 0.000000002298 64.0
SHD3_k127_3307989_8 - - - - 0.00000001476 65.0
SHD3_k127_3327562_0 Signal transduction histidine kinase - - - 1.337e-209 673.0
SHD3_k127_3327562_1 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003067 616.0
SHD3_k127_3327562_10 - - - - 0.00000000000000000000000000003538 121.0
SHD3_k127_3327562_2 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001006 282.0
SHD3_k127_3327562_3 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002022 261.0
SHD3_k127_3327562_4 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000003055 218.0
SHD3_k127_3327562_5 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.000000000000000000000000000000000000000000000000000000136 200.0
SHD3_k127_3327562_6 protein methyltransferase activity K02687 - - 0.0000000000000000000000000000000000000000000002037 175.0
SHD3_k127_3327562_8 FHA domain - - - 0.00000000000000000000000000000000001041 138.0
SHD3_k127_3327562_9 Protein of unknown function (DUF2505) - - - 0.000000000000000000000000000000005962 134.0
SHD3_k127_3335179_0 uridine kinase K00876 - 2.7.1.48 5.307e-197 637.0
SHD3_k127_3335179_1 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 388.0
SHD3_k127_3335179_10 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000001181 120.0
SHD3_k127_3335179_11 protein trimerization - - - 0.0000000000000000000004772 107.0
SHD3_k127_3335179_12 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000013 95.0
SHD3_k127_3335179_13 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000007389 84.0
SHD3_k127_3335179_14 Regulatory protein, FmdB family - - - 0.00002905 52.0
SHD3_k127_3335179_15 calcium ion binding - - - 0.0001985 52.0
SHD3_k127_3335179_2 secondary active sulfate transmembrane transporter activity K03321 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004139 310.0
SHD3_k127_3335179_3 LysM domain protein K07261 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 310.0
SHD3_k127_3335179_4 OmpA family K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009237 281.0
SHD3_k127_3335179_5 TIGRFAM molybdenum cofactor synthesis domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002233 271.0
SHD3_k127_3335179_6 MoeA N-terminal region (domain I and II) - - - 0.0000000000000000000000000000000000000000000000000000000000000005926 235.0
SHD3_k127_3335179_7 Bestrophin, RFP-TM, chloride channel K08994 - - 0.000000000000000000000000000000000000000000000000000000001831 210.0
SHD3_k127_3335179_8 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000007289 215.0
SHD3_k127_3335179_9 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) - - - 0.000000000000000000000000000000000000002141 154.0
SHD3_k127_3339687_0 Belongs to the ATP-dependent AMP-binding enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 372.0
SHD3_k127_3339687_1 Glycosyl hydrolase family 57 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005898 360.0
SHD3_k127_3339687_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000001982 88.0
SHD3_k127_3339687_3 acyl carrier protein - - - 0.000000005393 64.0
SHD3_k127_3344624_0 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000007445 226.0
SHD3_k127_3353426_0 Sterol carrier protein domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 373.0
SHD3_k127_3353426_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001826 281.0
SHD3_k127_3353426_2 COG2513 PEP phosphonomutase and related enzymes K01841,K03417 - 4.1.3.30,5.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000009811 245.0
SHD3_k127_3353426_3 Predicted Zn-dependent protease (DUF2268) - - - 0.000000000000000001649 90.0
SHD3_k127_3353426_4 - - - - 0.000000000000004334 87.0
SHD3_k127_3353426_5 - - - - 0.0001627 53.0
SHD3_k127_3356613_0 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000839 370.0
SHD3_k127_3356613_1 alpha-L-arabinofuranosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 301.0
SHD3_k127_3356613_2 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000485 226.0
SHD3_k127_3363336_0 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000004593 235.0
SHD3_k127_3363336_1 PFAM Formiminotransferase-cyclodeaminase - - - 0.0000000000000000000000000000000000000000000000000000000007444 208.0
SHD3_k127_3363336_2 Apoptosis-inducing factor, mitochondrion-associated, C-term - - - 0.000000000000000000000000000000000000000009987 164.0
SHD3_k127_3363336_3 COG1668 ABC-type Na efflux pump, permease component K01992,K09696 - - 0.0000000000008408 81.0
SHD3_k127_336379_0 Spore coat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 587.0
SHD3_k127_336379_10 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000007056 73.0
SHD3_k127_336379_11 alpha-galactosidase K01179,K01183 - 3.2.1.14,3.2.1.4 0.00000005028 64.0
SHD3_k127_336379_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 414.0
SHD3_k127_336379_3 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 345.0
SHD3_k127_336379_4 B-1 B cell differentiation K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008612 295.0
SHD3_k127_336379_5 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001948 273.0
SHD3_k127_336379_6 Lipolytic acyl hydrolase (LAH) - - - 0.000000000000000000000000000000000000000001058 165.0
SHD3_k127_336379_7 heat shock protein binding - - - 0.000000000000000000000000000004866 133.0
SHD3_k127_336379_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000002403 99.0
SHD3_k127_33680_0 RecQ zinc-binding K03654 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 602.0
SHD3_k127_33680_1 Rhs family - - - 0.0000000000000000000000000000000000001347 157.0
SHD3_k127_33680_2 Rhs family - - - 0.00000000000000000000000000004289 131.0
SHD3_k127_33680_3 Integrin alpha (beta-propellor repeats). - - - 0.000002385 61.0
SHD3_k127_337323_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 5.093e-300 934.0
SHD3_k127_337323_1 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00756,K00758 - 2.4.2.2,2.4.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008606 482.0
SHD3_k127_337323_10 Lipoprotein K05811 - - 0.0000000000000000000005809 101.0
SHD3_k127_337323_11 nuclear chromosome segregation K03546 - - 0.00000000000003457 78.0
SHD3_k127_337323_2 WYL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 464.0
SHD3_k127_337323_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006222 326.0
SHD3_k127_337323_4 PFAM Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002165 251.0
SHD3_k127_337323_5 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002739 243.0
SHD3_k127_337323_6 Transglycosylase K08309 - - 0.000000000000000000000000000000000000000000000000000000000000001238 229.0
SHD3_k127_337323_7 PFAM Integrase core domain - - - 0.0000000000000000000000000000000000000000000000000000000001422 220.0
SHD3_k127_337323_8 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179,K04040,K17105 - 2.5.1.133,2.5.1.39,2.5.1.42,2.5.1.62 0.000000000000000000000000000000000000000000009918 178.0
SHD3_k127_337323_9 EcsC protein family - - - 0.000000000000000000000000000000000000000000118 172.0
SHD3_k127_3380146_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 522.0
SHD3_k127_3380146_1 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006979 406.0
SHD3_k127_3380146_10 Belongs to the peptidase S8 family - - - 0.000003498 60.0
SHD3_k127_3380146_2 Belongs to the glycosyl hydrolase 30 family K15924 - 3.2.1.136 0.0000000000000000000000000000000000000000000000000000000000000000001506 244.0
SHD3_k127_3380146_3 Alpha-L-arabinofuranosidase B, catalytic - - - 0.00000000000000000000000000000000000000000000000000000000003021 222.0
SHD3_k127_3380146_4 Spore coat - - - 0.0000000000000000000000000000000000000000000000000000005121 212.0
SHD3_k127_3380146_5 Kelch motif - - - 0.0000000000000000000000000000000000000000000000000452 202.0
SHD3_k127_3380146_6 PFAM regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000001145 123.0
SHD3_k127_3380146_7 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.00000000000000000001652 94.0
SHD3_k127_3380146_8 Belongs to the peptidase S8 family - - - 0.0000000000002244 76.0
SHD3_k127_3391187_0 4Fe-4S dicluster domain - - - 0.0 1386.0
SHD3_k127_3391187_1 D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.0 1237.0
SHD3_k127_3391187_11 - - - - 0.000000000000000007392 88.0
SHD3_k127_3391187_12 response regulator - - - 0.0000000008562 68.0
SHD3_k127_3391187_2 acetolactate synthase K00156 - 1.2.5.1 6.181e-265 827.0
SHD3_k127_3391187_3 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 4.325e-262 833.0
SHD3_k127_3391187_4 Belongs to the mandelate racemase muconate lactonizing enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 469.0
SHD3_k127_3391187_5 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005465 434.0
SHD3_k127_3391187_6 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001944 398.0
SHD3_k127_3391187_7 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000001051 244.0
SHD3_k127_3391187_8 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000001918 239.0
SHD3_k127_3391187_9 Anabaena sensory rhodopsin transducer - - - 0.0000000000000000000000000000000000000000000000000319 182.0
SHD3_k127_3393351_0 - - - - 3.912e-224 729.0
SHD3_k127_3393351_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008545 545.0
SHD3_k127_3393351_10 Domain of unknown function (DUF4112) - - - 0.0000000000000000000005065 103.0
SHD3_k127_3393351_12 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000006524 72.0
SHD3_k127_3393351_13 HNH endonuclease - - - 0.000001306 61.0
SHD3_k127_3393351_2 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 530.0
SHD3_k127_3393351_3 TIGRFAM carbamoyl-phosphate synthase, small subunit K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 436.0
SHD3_k127_3393351_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001747 269.0
SHD3_k127_3393351_5 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002111 291.0
SHD3_k127_3393351_7 Prokaryotic N-terminal methylation motif K02650 - - 0.000000000000000000000000000000000000000005502 161.0
SHD3_k127_3393351_8 Belongs to the N-Me-Phe pilin family K02650 - - 0.000000000000000000000000000000003766 137.0
SHD3_k127_3393351_9 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000004104 118.0
SHD3_k127_3395440_0 Glycosyl hydrolases family 15 - - - 1.016e-237 751.0
SHD3_k127_3395440_1 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 383.0
SHD3_k127_3395440_2 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.00000000000000000000000000000000000000000000000000000007236 200.0
SHD3_k127_3395440_3 NUDIX domain - - - 0.000000000000000000000000000000000000000000000000002924 185.0
SHD3_k127_3395440_4 FAD binding domain K21401 - 1.3.99.38 0.000000000000000000000000000000000000000000000000004937 196.0
SHD3_k127_3395440_5 Domain of unknown function (DUF2383) - - - 0.000000000000000000000000000000000000000000000000945 183.0
SHD3_k127_3395440_6 Domain of unknown function (DUF2383) - - - 0.0000000000000000000000000000000001126 139.0
SHD3_k127_3395440_7 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000001886 121.0
SHD3_k127_3419655_0 Domain of unknown function (DUF5110) K01811 - 3.2.1.177 0.0 1043.0
SHD3_k127_3419655_1 Histidine kinase K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000001431 278.0
SHD3_k127_3425766_0 - - - - 4.645e-305 965.0
SHD3_k127_3425766_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 2.834e-269 845.0
SHD3_k127_3425766_2 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 604.0
SHD3_k127_3425766_3 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 606.0
SHD3_k127_3425766_4 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364 424.0
SHD3_k127_3425766_5 D-alanyl-D-alanine carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000001328 216.0
SHD3_k127_3425766_7 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA - - - 0.0000000001372 68.0
SHD3_k127_3433899_0 Right handed beta helix region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 378.0
SHD3_k127_3433899_1 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 353.0
SHD3_k127_3433899_10 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00000000003419 66.0
SHD3_k127_3433899_11 AAA-like domain - - - 0.0006963 48.0
SHD3_k127_3433899_2 Phosphomannose isomerase type I K01809,K01840 - 5.3.1.8,5.4.2.8 0.0000000000000000000000000000000000000000000000004617 195.0
SHD3_k127_3433899_3 - - - - 0.0000000000000000000000000000000001396 138.0
SHD3_k127_3433899_5 PD-(D/E)XK nuclease family transposase - - - 0.00000000000000000000000000000005884 140.0
SHD3_k127_3433899_6 PD-(D/E)XK nuclease family transposase - - - 0.00000000000000000000000000000006779 136.0
SHD3_k127_3433899_7 InterPro IPR007367 - - - 0.000000000000000000000003424 105.0
SHD3_k127_3433899_8 PD-(D/E)XK nuclease family transposase - - - 0.000000000000001366 88.0
SHD3_k127_3433899_9 PD-(D/E)XK nuclease family transposase - - - 0.000000000000002122 82.0
SHD3_k127_3442293_0 Nitrite and sulphite reductase 4Fe-4S - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000134 282.0
SHD3_k127_3442293_1 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.0000000000000000000000000000000000000000000000006882 186.0
SHD3_k127_3442293_2 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000000000008629 149.0
SHD3_k127_3442293_3 Enoyl-CoA hydratase K13779,K15312 - 4.2.1.57 0.000000000000000000003828 102.0
SHD3_k127_3442293_4 PFAM methyl-viologen-reducing hydrogenase delta subunit - - - 0.0000000000075 73.0
SHD3_k127_3444429_0 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008259 254.0
SHD3_k127_3444429_1 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000002633 197.0
SHD3_k127_3444429_2 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000000000003517 174.0
SHD3_k127_3447650_0 FAD linked oxidase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 568.0
SHD3_k127_3447650_1 Histidine kinase K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000306 443.0
SHD3_k127_3447650_2 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 396.0
SHD3_k127_3447650_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 319.0
SHD3_k127_3447650_4 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006958 315.0
SHD3_k127_3447650_5 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 291.0
SHD3_k127_3447650_6 Phenazine biosynthesis PhzC PhzF protein K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001559 281.0
SHD3_k127_3447650_7 YXWGXW repeat (2 copies) - - - 0.0000000002075 66.0
SHD3_k127_3447650_8 - - - - 0.0000000002901 68.0
SHD3_k127_3447998_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 489.0
SHD3_k127_3447998_1 Belongs to the N(4) N(6)-methyltransferase family K00590 - 2.1.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 472.0
SHD3_k127_3447998_10 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000005224 128.0
SHD3_k127_3447998_11 Regulatory protein, FmdB family - - - 0.00000000001369 66.0
SHD3_k127_3447998_2 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 454.0
SHD3_k127_3447998_3 Calcineurin-like phosphoesterase superfamily domain K07098 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 359.0
SHD3_k127_3447998_5 Oxidoreductase, short chain dehydrogenase reductase family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005018 312.0
SHD3_k127_3447998_6 PFAM Endonuclease Exonuclease phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000002381 244.0
SHD3_k127_3447998_7 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000000000001719 216.0
SHD3_k127_3447998_8 Highly conserved protein containing a thioredoxin domain - - - 0.000000000000000000000000000000000000000001082 179.0
SHD3_k127_3447998_9 addiction module antidote protein HigA K07110,K21686 - - 0.0000000000000000000000000000001449 136.0
SHD3_k127_3449134_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 0.0 1032.0
SHD3_k127_3449134_1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 1.699e-286 914.0
SHD3_k127_3449134_10 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000003388 147.0
SHD3_k127_3449134_11 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000002061 130.0
SHD3_k127_3449134_12 Domain of unknown function (DUF362) - - - 0.00000000000000000000005096 111.0
SHD3_k127_3449134_13 C-terminal four TMM region of protein-O-mannosyltransferase K00728 - 2.4.1.109 0.000000000000000001393 99.0
SHD3_k127_3449134_18 RHS Repeat - - - 0.0007077 51.0
SHD3_k127_3449134_2 Belongs to the glycosyl hydrolase 31 family K01187 - 3.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 473.0
SHD3_k127_3449134_3 PFAM asparagine synthase K06864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 369.0
SHD3_k127_3449134_4 nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007713 338.0
SHD3_k127_3449134_5 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family K13687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 310.0
SHD3_k127_3449134_6 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 302.0
SHD3_k127_3449134_7 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit - - - 0.000000000000000000000000000000000000000000000000000000004436 208.0
SHD3_k127_3449134_8 Clan AA aspartic protease, AF_0612 family - - - 0.00000000000000000000000000000000000000000000007796 172.0
SHD3_k127_3449134_9 recA bacterial DNA recombination protein - - - 0.000000000000000000000000000000000000000000002517 174.0
SHD3_k127_3451376_0 serine threonine protein kinase - - - 0.0 1236.0
SHD3_k127_3451376_1 Periplasmic protein TonB links inner and outer membranes - - - 7.362e-274 870.0
SHD3_k127_3451376_10 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000003325 223.0
SHD3_k127_3451376_11 Ferritin-like domain K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000007664 199.0
SHD3_k127_3451376_12 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000003962 186.0
SHD3_k127_3451376_13 PFAM Hemerythrin HHE cation binding domain protein - - - 0.000000000000000000000000000000000000000004939 164.0
SHD3_k127_3451376_16 Trypsin-like serine protease - - - 0.0000000000000000000938 104.0
SHD3_k127_3451376_18 acid phosphatase activity - - - 0.0000000000006326 81.0
SHD3_k127_3451376_2 Large family of predicted nucleotide-binding domains K07175 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003445 606.0
SHD3_k127_3451376_3 phosphorelay signal transduction system K02282,K20971 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 562.0
SHD3_k127_3451376_4 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000383 514.0
SHD3_k127_3451376_5 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003508 421.0
SHD3_k127_3451376_6 Signal peptide peptidase K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 413.0
SHD3_k127_3451376_7 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 355.0
SHD3_k127_3451376_8 Exodeoxyribonuclease iii K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000002378 274.0
SHD3_k127_3451376_9 Exonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005057 257.0
SHD3_k127_3454426_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 479.0
SHD3_k127_3454426_1 IgA Peptidase M64 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 421.0
SHD3_k127_3454426_10 von Willebrand factor (vWF) type A domain - - - 0.0009931 51.0
SHD3_k127_3454426_2 SMART serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005491 340.0
SHD3_k127_3454426_3 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000006897 173.0
SHD3_k127_3454426_4 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000001057 175.0
SHD3_k127_3454426_6 PFAM transcription factor CarD K07736 - - 0.0000000000000000000000000000000000000001808 157.0
SHD3_k127_3454426_8 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000001644 113.0
SHD3_k127_3454426_9 Major facilitator Superfamily K16210 - - 0.0000000000000000001435 93.0
SHD3_k127_3461254_0 PFAM CO dehydrogenase acetyl-CoA synthase complex beta subunit K14138 - 2.3.1.169 1.235e-275 871.0
SHD3_k127_3461254_1 TIGRFAM Carbon-monoxide dehydrogenase, catalytic subunit K00198 - 1.2.7.4 3.523e-208 667.0
SHD3_k127_3461254_10 AAA domain K07321 - - 0.000000000000000000000000000000000000000000001777 174.0
SHD3_k127_3461254_11 Rhomboid-type serine protease that catalyzes intramembrane proteolysis K02441 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019219,GO:0019222,GO:0019538,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042802,GO:0043170,GO:0043565,GO:0044212,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000000005438 177.0
SHD3_k127_3461254_12 CO dehydrogenase/acetyl-CoA synthase delta subunit K00197 - 2.1.1.245 0.000000000000000000000000000000000000001972 154.0
SHD3_k127_3461254_13 - - - - 0.000000000000000000000000000000000007918 152.0
SHD3_k127_3461254_14 PFAM 4Fe-4S K00196 - - 0.000000000000000000000000000000404 140.0
SHD3_k127_3461254_15 - - - - 0.00000000000000000000000003022 113.0
SHD3_k127_3461254_2 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 334.0
SHD3_k127_3461254_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007222 297.0
SHD3_k127_3461254_4 CO dehydrogenase acetyl-CoA synthase K00194 - 2.1.1.245 0.000000000000000000000000000000000000000000000000000000000000000000000000000001011 286.0
SHD3_k127_3461254_5 PFAM CobQ CobB MinD ParA nucleotide binding domain K07321 - - 0.000000000000000000000000000000000000000000000000000000000000000000005843 243.0
SHD3_k127_3461254_6 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.00000000000000000000000000000000000000000000000000000000000000000001671 252.0
SHD3_k127_3461254_7 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000007624 237.0
SHD3_k127_3461254_8 Sulfatase-modifying factor enzyme 1 K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000002488 236.0
SHD3_k127_3461254_9 Domain of unknown function (DUF4336) - - - 0.00000000000000000000000000000000000000000000000000000001083 205.0
SHD3_k127_3483765_0 self proteolysis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 545.0
SHD3_k127_3492896_0 Protein serine threonine phosphatase K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 376.0
SHD3_k127_3492896_1 Radical SAM domain protein K04070 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005889 347.0
SHD3_k127_3492896_2 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003607 284.0
SHD3_k127_3492896_3 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000002488 220.0
SHD3_k127_3492896_4 Putative zinc-finger K03088 - - 0.0000000000000000000000000000000000000000000000000000000007033 216.0
SHD3_k127_3492896_5 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000005094 115.0
SHD3_k127_3492896_6 Acetyltransferase (GNAT) domain - - - 0.000000000000000681 90.0
SHD3_k127_3493606_0 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007652 399.0
SHD3_k127_3493606_1 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000004267 240.0
SHD3_k127_3493606_2 Histidine-specific methyltransferase, SAM-dependent - - - 0.000000000000000000000000000000000000000000000000000000008326 203.0
SHD3_k127_3493606_3 Smr domain - - - 0.0000001914 53.0
SHD3_k127_3498774_0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K01214 - 3.2.1.68 1e-323 1010.0
SHD3_k127_3498774_1 4Fe-4S dicluster domain K00184 - - 1.146e-260 837.0
SHD3_k127_3498774_10 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005038 335.0
SHD3_k127_3498774_12 PFAM cytochrome c oxidase, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002967 263.0
SHD3_k127_3498774_13 signal sequence binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002438 256.0
SHD3_k127_3498774_14 D-alanyl-D-alanine carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003703 250.0
SHD3_k127_3498774_15 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000003151 238.0
SHD3_k127_3498774_16 N-4 methylation of cytosine - - - 0.0000000000000000000000000000000000000000000000000000000000000000002943 238.0
SHD3_k127_3498774_17 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000002835 231.0
SHD3_k127_3498774_18 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.00000000000000000000000000000000000000000000000000000000009871 214.0
SHD3_k127_3498774_19 HAD-hyrolase-like K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000001805 207.0
SHD3_k127_3498774_2 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B - - - 2.043e-240 756.0
SHD3_k127_3498774_20 Exonuclease - - - 0.0000000000000000000000000000000000000000000000000002329 191.0
SHD3_k127_3498774_21 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008495,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.0000000000000000000000000000000000000000002718 169.0
SHD3_k127_3498774_22 - - - - 0.00000000000000000000000000004326 127.0
SHD3_k127_3498774_23 Belongs to the serpin family K13963 - - 0.000000000000000000000003425 117.0
SHD3_k127_3498774_24 Belongs to the glycosyl hydrolase family 6 K19668,K20844 - 3.2.1.55,3.2.1.91 0.0000000000000008563 91.0
SHD3_k127_3498774_26 WD40-like Beta Propeller Repeat - - - 0.000000000002364 79.0
SHD3_k127_3498774_3 PFAM Polysulphide reductase, NrfD - - - 1.064e-212 668.0
SHD3_k127_3498774_4 lysine 2,3-aminomutase activity K01843,K19810 - 5.4.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000454 494.0
SHD3_k127_3498774_5 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 454.0
SHD3_k127_3498774_6 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004593 418.0
SHD3_k127_3498774_7 Protein of unknown function (DUF3341) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004914 401.0
SHD3_k127_3498774_8 Sel1-like repeats. K07126 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 396.0
SHD3_k127_3498774_9 ATP-grasp domain K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 372.0
SHD3_k127_3499296_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 385.0
SHD3_k127_3499296_1 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009626 335.0
SHD3_k127_3499296_2 Periplasmic protein TonB links inner and outer membranes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005128 287.0
SHD3_k127_3499296_3 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007048 267.0
SHD3_k127_3499296_4 Methionine synthase K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000007542 251.0
SHD3_k127_3499296_5 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000008364 173.0
SHD3_k127_3499296_7 - - - - 0.0000000000000000000000000085 121.0
SHD3_k127_3501399_0 NapC/NirT cytochrome c family, N-terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002457 427.0
SHD3_k127_3501399_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000001912 126.0
SHD3_k127_3501399_2 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.000000000000000000000005085 117.0
SHD3_k127_3508652_0 Helicase K17675 - 3.6.4.13 2.568e-240 766.0
SHD3_k127_3508652_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 495.0
SHD3_k127_3508652_10 protein kinase activity - - - 0.0000000000000000000006986 111.0
SHD3_k127_3508652_11 Radical SAM domain protein - - - 0.00000000008905 68.0
SHD3_k127_3508652_12 subunit of a heme lyase K02200 - - 0.000000002364 64.0
SHD3_k127_3508652_2 Belongs to the glycosyl hydrolase 43 family K01198,K01209 - 3.2.1.37,3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000536 472.0
SHD3_k127_3508652_3 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007612 447.0
SHD3_k127_3508652_4 PFAM Pyruvate carboxyltransferase K01666 - 4.1.3.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056 429.0
SHD3_k127_3508652_5 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001019 282.0
SHD3_k127_3508652_6 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001109 275.0
SHD3_k127_3508652_7 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000446 258.0
SHD3_k127_3508652_8 Glycine cleavage system regulatory protein - - - 0.0000000000000000000000000000000000000000000000615 178.0
SHD3_k127_3508652_9 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000128 120.0
SHD3_k127_3512009_0 chromosome segregation K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009521 369.0
SHD3_k127_3512009_1 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 305.0
SHD3_k127_3512009_2 KDPG and KHG aldolase K01625 - 4.1.2.14,4.1.3.42 0.0000000000000000000000000000000000000000000000000000000002442 211.0
SHD3_k127_3512009_3 (GMC) oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000004743 206.0
SHD3_k127_3512009_4 protein heterodimerization activity - - - 0.000000000000000000000000000000000000000000000007096 177.0
SHD3_k127_3512009_5 Major facilitator Superfamily K03292,K16248 - - 0.0000000000000000000000000000000000000002973 153.0
SHD3_k127_3512009_6 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000001523 112.0
SHD3_k127_3524231_0 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 529.0
SHD3_k127_3524231_1 PFAM secretion protein HlyD family protein K01993 - - 0.0000000000000000000000000000000000000000000000000000000000000000009462 248.0
SHD3_k127_3524231_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000001937 227.0
SHD3_k127_3524231_3 Psort location Cytoplasmic, score - - - 0.0000000000000000002133 94.0
SHD3_k127_3524231_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000382 72.0
SHD3_k127_3529137_0 Belongs to the glycosyl hydrolase 26 family K01218 - 3.2.1.78 0.000000000000000000000000000000003944 150.0
SHD3_k127_3529137_1 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000008115 133.0
SHD3_k127_3529137_2 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000008908 129.0
SHD3_k127_3529137_3 Domain of unknown function (DUF4328) - - - 0.00000000000000000001847 100.0
SHD3_k127_3529137_4 Domain of unknown function DUF123 - - - 0.00000000000000005587 91.0
SHD3_k127_3529137_5 - - - - 0.00000000006317 70.0
SHD3_k127_3529137_6 domain, Protein K01256,K01361,K01387,K03301 - 3.4.11.2,3.4.21.96,3.4.24.3 0.000000002538 72.0
SHD3_k127_3529137_7 bacterial-type flagellum-dependent cell motility - - - 0.000002923 61.0
SHD3_k127_353063_1 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000000000000000000000002064 199.0
SHD3_k127_353063_2 PFAM transposase IS4 family protein - - - 0.0000000000002185 76.0
SHD3_k127_353063_3 Transposase DDE domain - - - 0.000000000225 73.0
SHD3_k127_353063_4 Transcriptional regulator, TraR DksA family K06204 - - 0.0000003712 57.0
SHD3_k127_3535392_0 Tetratricopeptide repeat - - - 6.923e-207 674.0
SHD3_k127_3535392_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004236 282.0
SHD3_k127_3535392_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001726 260.0
SHD3_k127_3539768_0 ABC1 family K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000981 614.0
SHD3_k127_3539768_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007148 455.0
SHD3_k127_3539768_2 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 432.0
SHD3_k127_3539768_3 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 304.0
SHD3_k127_3539768_4 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000524 219.0
SHD3_k127_3539768_5 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000138 169.0
SHD3_k127_3539768_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000000009949 110.0
SHD3_k127_3539768_7 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.000000000003279 70.0
SHD3_k127_3553273_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000612 330.0
SHD3_k127_3553273_1 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 319.0
SHD3_k127_3553273_11 Sulfatase K01133 - 3.1.6.6 0.0000000000000001401 91.0
SHD3_k127_3553273_12 - - - - 0.000000000000002053 80.0
SHD3_k127_3553273_2 ABC-type transport system involved in multi-copper enzyme maturation permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 301.0
SHD3_k127_3553273_5 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000001999 165.0
SHD3_k127_3553273_6 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000000001415 177.0
SHD3_k127_3553273_7 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000006835 153.0
SHD3_k127_3553273_8 Protein of unknown function (DUF533) K11962 - - 0.0000000000000000000000000000002005 128.0
SHD3_k127_3553273_9 - - - - 0.0000000000000000000005282 108.0
SHD3_k127_3560538_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 476.0
SHD3_k127_3560538_1 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008213 305.0
SHD3_k127_3560538_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002303 292.0
SHD3_k127_3560538_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000006884 233.0
SHD3_k127_3560538_4 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000003269 129.0
SHD3_k127_3560538_5 PFAM Glycosyl transferase family 2 K07011 - - 0.00000000000000000000000000002898 129.0
SHD3_k127_3582813_0 PFAM Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 547.0
SHD3_k127_3582813_1 GDSL-like Lipase/Acylhydrolase - - - 0.0000000000000000000000000000000000000000000000000000006127 209.0
SHD3_k127_3582813_2 PFAM transcriptional regulator PadR family protein - - - 0.000000000000000000000000000000000000000001352 158.0
SHD3_k127_3582813_3 peroxiredoxin activity K01607 - 4.1.1.44 0.0000000000000000000000000000000003299 136.0
SHD3_k127_3582813_4 Domain of Unknown Function (DUF1540) - - - 0.00000000000000000000000000006681 118.0
SHD3_k127_3582813_6 oxidoreductase activity K07114 - - 0.00000000004635 69.0
SHD3_k127_3583614_0 Protein kinase domain K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 308.0
SHD3_k127_3583614_1 endo-1,4-beta-xylanase activity K01181 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000064 298.0
SHD3_k127_3583614_2 Protein kinase domain K08884,K12132 - 2.7.11.1 0.0000000003393 66.0
SHD3_k127_3587849_0 POT family K03305 - - 2.5e-235 735.0
SHD3_k127_3587849_1 PFAM Aminotransferase class I and II K00814 - 2.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006659 531.0
SHD3_k127_3587849_2 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000756 155.0
SHD3_k127_3587849_3 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000004811 148.0
SHD3_k127_3587849_4 4-vinyl reductase, 4VR K07013,K17763 - - 0.00000000000000000000000000000852 124.0
SHD3_k127_3587849_5 Belongs to the peptidase S8 family - - - 0.00003992 56.0
SHD3_k127_3587849_7 PFAM NADH ubiquinone oxidoreductase 20 kDa subunit K14128 - 1.8.98.5 0.0002187 46.0
SHD3_k127_3589084_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000892 570.0
SHD3_k127_3589084_1 Forkhead associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 380.0
SHD3_k127_3589084_2 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000001966 260.0
SHD3_k127_3589084_3 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000002686 203.0
SHD3_k127_3589084_4 Belongs to the peptidase S1B family K01318 - 3.4.21.19 0.0000000000000007774 85.0
SHD3_k127_3589084_5 Belongs to the glycosyl hydrolase 30 family - - - 0.00000000158 71.0
SHD3_k127_3589084_6 Belongs to the glycosyl hydrolase 31 family - - - 0.0001174 55.0
SHD3_k127_3592451_0 von Willebrand factor type A domain - - - 1.769e-315 1004.0
SHD3_k127_3592451_1 Aerotolerance regulator N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001768 556.0
SHD3_k127_3592451_2 ABC-type transport system involved in multi-copper enzyme maturation permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 446.0
SHD3_k127_3592451_3 ABC transporter, ATP-binding protein K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 432.0
SHD3_k127_3592451_4 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004854 297.0
SHD3_k127_3592451_5 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000004669 138.0
SHD3_k127_3592451_8 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008773,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0030312,GO:0044464,GO:0070566,GO:0070569,GO:0071944,GO:0140096 2.7.7.59 0.000003606 58.0
SHD3_k127_3595261_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1205.0
SHD3_k127_3595261_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1069.0
SHD3_k127_3595261_10 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001963 291.0
SHD3_k127_3595261_11 Catalyzes the conversion of dihydroorotate to orotate with NAD( ) as electron acceptor K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006855 279.0
SHD3_k127_3595261_12 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006629 280.0
SHD3_k127_3595261_14 Rhomboid family K07059 - - 0.00000000000000000000000000000000000000000000000000000000000000000008325 239.0
SHD3_k127_3595261_15 Amb_all K01728 - 4.2.2.2 0.0000000000000000000000000000000000000000000000000000000000000000008182 241.0
SHD3_k127_3595261_16 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000001003 201.0
SHD3_k127_3595261_18 - - - - 0.000000000000000000000000000000000000004237 154.0
SHD3_k127_3595261_19 - - - - 0.0000000000000000000000000000000000128 144.0
SHD3_k127_3595261_2 Cytochrome c-type biogenesis protein K02198 - - 1.404e-245 777.0
SHD3_k127_3595261_20 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.00000000000000000000000000000005551 134.0
SHD3_k127_3595261_21 Toxic component of a toxin-antitoxin (TA) module. An RNase K07065 - - 0.0000000000000000000000000000001001 133.0
SHD3_k127_3595261_22 - - - - 0.00000000000000000000000000002397 128.0
SHD3_k127_3595261_23 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0040007,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000007185 120.0
SHD3_k127_3595261_24 Domain of unknown function (DUF4405) - - - 0.00000000000000000000006577 105.0
SHD3_k127_3595261_25 - - - - 0.0000000000000000000008906 100.0
SHD3_k127_3595261_26 MerR, DNA binding K19591 - - 0.00000000000000007295 87.0
SHD3_k127_3595261_27 DNA-templated transcription, initiation K03088 - - 0.000000000000002342 79.0
SHD3_k127_3595261_28 Aspartyl protease - - - 0.00000000000001242 79.0
SHD3_k127_3595261_29 Ribbon-helix-helix protein, copG family - - - 0.0000000000004018 73.0
SHD3_k127_3595261_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 485.0
SHD3_k127_3595261_30 Tetratricopeptide repeat - - - 0.0000000002104 71.0
SHD3_k127_3595261_31 cell envelope organization K05807,K08309 - - 0.000003709 58.0
SHD3_k127_3595261_4 lysine 2,3-aminomutase K01843 - 5.4.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 469.0
SHD3_k127_3595261_5 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001523 430.0
SHD3_k127_3595261_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 422.0
SHD3_k127_3595261_7 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006297 343.0
SHD3_k127_3595261_8 ABC transporter permease K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000467 334.0
SHD3_k127_3595261_9 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001138 291.0
SHD3_k127_3597395_0 Beta-eliminating lyase K00639 - 2.3.1.29 9.886e-206 653.0
SHD3_k127_3597395_1 COG1233 Phytoene dehydrogenase and related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009376 571.0
SHD3_k127_3597395_10 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.0000000000000000000000000000000000000000005879 164.0
SHD3_k127_3597395_11 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.000000000000000000000000000000000000000003035 163.0
SHD3_k127_3597395_12 - - - - 0.00000000000000000000000000000000000000006969 170.0
SHD3_k127_3597395_13 Putative transmembrane protein (PGPGW) - - - 0.0000000000000000000001511 107.0
SHD3_k127_3597395_14 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.00000000003531 73.0
SHD3_k127_3597395_15 Bacterial antitoxin of type II TA system, VapB - - - 0.0000000001514 64.0
SHD3_k127_3597395_16 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.000000009988 59.0
SHD3_k127_3597395_17 Vault protein inter-alpha-trypsin domain - - - 0.0000000851 61.0
SHD3_k127_3597395_2 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004672 471.0
SHD3_k127_3597395_3 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 439.0
SHD3_k127_3597395_4 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 352.0
SHD3_k127_3597395_5 NmrA-like family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 344.0
SHD3_k127_3597395_6 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000003629 266.0
SHD3_k127_3597395_7 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000002694 269.0
SHD3_k127_3604561_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 1.014e-311 988.0
SHD3_k127_3604561_1 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 303.0
SHD3_k127_3604561_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000001053 210.0
SHD3_k127_3604561_3 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000161 160.0
SHD3_k127_3604561_4 Cell wall formation K00075 - 1.3.1.98 0.0007936 44.0
SHD3_k127_3607368_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 4.771e-233 734.0
SHD3_k127_3607368_1 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003493 564.0
SHD3_k127_3607368_2 Glycosyl hydrolase family 45 - GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.000000000000000000000000000000000000000000000000000002061 198.0
SHD3_k127_3607368_3 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000000002223 199.0
SHD3_k127_3607368_4 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000009758 172.0
SHD3_k127_3607368_5 NUDIX domain - - - 0.000000000000000000000000000000000000808 160.0
SHD3_k127_3607368_6 snoRNA binding - - - 0.000000000000000000000000000001999 128.0
SHD3_k127_3607368_7 Putative beta-barrel porin-2, OmpL-like. bbp2 - - - 0.00000000000000000000000003491 120.0
SHD3_k127_3614919_0 Transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004619 486.0
SHD3_k127_3614919_1 acetate kinase activity K00925 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 296.0
SHD3_k127_3614919_2 soluble inorganic K01507 GO:0003674,GO:0003824,GO:0004427,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0008150,GO:0010035,GO:0010038,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0050896 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000002831 227.0
SHD3_k127_3614919_3 PFAM Peptidase family M20 M25 M40 - - - 0.0000000000000000000000000000000000004449 156.0
SHD3_k127_3614919_5 PFAM Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000009598 109.0
SHD3_k127_3620586_0 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 577.0
SHD3_k127_3620586_1 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000007201 162.0
SHD3_k127_3620586_2 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000001936 158.0
SHD3_k127_3620586_3 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000000005524 104.0
SHD3_k127_3622939_0 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 418.0
SHD3_k127_3622939_1 aspartate ornithine carbamoyltransferase, carbamoyl-P binding domain K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000001922 207.0
SHD3_k127_3622939_11 Trypsin-like serine protease K09640 - - 0.00002948 57.0
SHD3_k127_3622939_2 OmpA family K02557 - - 0.000000000000000000000000000000000000000004059 165.0
SHD3_k127_3622939_3 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000001928 160.0
SHD3_k127_3622939_4 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.000000000000000000000000000000001607 140.0
SHD3_k127_3622939_5 Kazal type serine protease inhibitors - - - 0.000000000000002961 89.0
SHD3_k127_3622939_6 cell envelope organization K05807,K08309 - - 0.000000000000003936 86.0
SHD3_k127_3622939_9 - - - - 0.000001414 60.0
SHD3_k127_362390_0 Pollen allergen - GO:0005575,GO:0005623,GO:0009986,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 477.0
SHD3_k127_362390_1 pectinesterase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007795 280.0
SHD3_k127_362390_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0009594 44.0
SHD3_k127_3634687_0 Alpha amylase, catalytic domain - - - 0.0000000000000000000000000000001785 125.0
SHD3_k127_3634687_2 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.00000003059 62.0
SHD3_k127_3634687_3 cellulose binding - - - 0.00001278 57.0
SHD3_k127_3634687_4 Two component regulator propeller - - - 0.00001996 58.0
SHD3_k127_3638331_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 8.469e-247 776.0
SHD3_k127_3638331_1 heat shock protein binding K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 403.0
SHD3_k127_3638331_11 COG COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain - - - 0.00000000000882 72.0
SHD3_k127_3638331_12 His Kinase A (phosphoacceptor) domain - - - 0.00000008388 60.0
SHD3_k127_3638331_13 - - - - 0.000000274 55.0
SHD3_k127_3638331_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003891 340.0
SHD3_k127_3638331_3 3-beta hydroxysteroid dehydrogenase/isomerase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000002771 281.0
SHD3_k127_3638331_4 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000001279 164.0
SHD3_k127_3638331_5 protein kinase activity - - - 0.0000000000000000000000000000000000000000001579 178.0
SHD3_k127_3638331_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000001517 159.0
SHD3_k127_3638331_7 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000000000000006443 134.0
SHD3_k127_3638331_8 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000001397 133.0
SHD3_k127_3638331_9 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000004862 117.0
SHD3_k127_3653874_0 ABC-type multidrug transport system ATPase component K21397 - - 0.0 1196.0
SHD3_k127_3653874_1 Domain of unknown function (DUF4215) - - - 1.597e-291 940.0
SHD3_k127_3653874_10 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000000000001643 250.0
SHD3_k127_3653874_11 TIGRFAM ABC-2 type transporter, NodJ K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000002672 233.0
SHD3_k127_3653874_12 CarboxypepD_reg-like domain - - - 0.000000000000000000000000000000000000000000000000000004513 202.0
SHD3_k127_3653874_13 PFAM conserved K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000005243 171.0
SHD3_k127_3653874_14 - - - - 0.00000000000000000000000000000000000000000004009 177.0
SHD3_k127_3653874_15 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000007724 156.0
SHD3_k127_3653874_16 Transcription factor zinc-finger - - - 0.0000000000000000000000000000000000196 145.0
SHD3_k127_3653874_17 oxidoreductase activity K07114 - - 0.0000000000000000000000000000000002119 148.0
SHD3_k127_3653874_18 histone H2A K63-linked ubiquitination - - - 0.000000000000000000000000000000003375 143.0
SHD3_k127_3653874_2 histone H2A K63-linked ubiquitination K03404,K07114 - 6.6.1.1 2.39e-211 686.0
SHD3_k127_3653874_20 transcription factor binding - - - 0.00000000000000000000000005832 110.0
SHD3_k127_3653874_21 COG COG0589 Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms - - - 0.00000000000000000000003502 111.0
SHD3_k127_3653874_22 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000003914 109.0
SHD3_k127_3653874_23 CarboxypepD_reg-like domain - - - 0.00000000000000006033 92.0
SHD3_k127_3653874_24 Belongs to the glycosyl hydrolase family 6 K19668,K20844 - 3.2.1.55,3.2.1.91 0.000000009419 67.0
SHD3_k127_3653874_3 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K00972 - 2.7.7.23,2.7.7.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000387 435.0
SHD3_k127_3653874_4 Belongs to the methyltransferase superfamily K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009819 411.0
SHD3_k127_3653874_5 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 354.0
SHD3_k127_3653874_6 AAA domain, putative AbiEii toxin, Type IV TA system K09695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 334.0
SHD3_k127_3653874_7 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 301.0
SHD3_k127_3653874_8 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000001819 262.0
SHD3_k127_3653874_9 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.0000000000000000000000000000000000000000000000000000000000000000005266 233.0
SHD3_k127_3655800_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K13924 - 2.1.1.80,3.1.1.61 0.0 1144.0
SHD3_k127_3655800_1 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003217 504.0
SHD3_k127_3655800_2 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 407.0
SHD3_k127_3655800_3 FIST N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008626 330.0
SHD3_k127_3655800_4 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005069 322.0
SHD3_k127_3655800_5 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000001518 174.0
SHD3_k127_3655800_6 PFAM RNP-1 like RNA-binding protein - - - 0.00000000000000000000000000007225 120.0
SHD3_k127_3655800_7 Parallel beta-helix repeats - - - 0.0000000000000001672 94.0
SHD3_k127_3655800_8 Domain of unknown function (DUF4833) - - - 0.0000000000000004524 85.0
SHD3_k127_3655874_0 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000936 266.0
SHD3_k127_3655874_1 - - - - 0.0000000000000000000000000000000000000000000002829 180.0
SHD3_k127_3655874_2 von Willebrand factor (vWF) type A domain - - - 0.000000000000149 76.0
SHD3_k127_3655874_3 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.000000000005464 76.0
SHD3_k127_3656580_0 PFAM NADH-ubiquinone oxidoreductase, chain 49kDa K00333,K14090 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009097 522.0
SHD3_k127_3656580_1 PFAM NADH ubiquinone oxidoreductase 20 kDa subunit K14088 - - 0.000000000000000000000000000000000000000000000000000000000000000000003165 238.0
SHD3_k127_3656580_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000002543 215.0
SHD3_k127_3656580_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000007227 190.0
SHD3_k127_3656580_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000001118 145.0
SHD3_k127_3656580_6 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K14091 - - 0.00000000003676 75.0
SHD3_k127_3657200_0 Fe-S oxidoreductases K22226 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005513 433.0
SHD3_k127_3657200_1 succinate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000005862 244.0
SHD3_k127_3657200_2 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000003651 59.0
SHD3_k127_3657200_3 - - - - 0.00007403 48.0
SHD3_k127_365876_0 Beta-L-arabinofuranosidase, GH127 K09955 - - 3.949e-274 867.0
SHD3_k127_365876_1 Glycosyl hydrolases family 39 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 406.0
SHD3_k127_365876_10 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00001583 58.0
SHD3_k127_365876_2 Pectate lyase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005218 302.0
SHD3_k127_365876_3 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001031 273.0
SHD3_k127_365876_4 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000006321 214.0
SHD3_k127_365876_5 - - - - 0.000000000000000000000000000000000000000007294 156.0
SHD3_k127_365876_6 RsbT co-antagonist protein rsbRD N-terminal domain - - - 0.00000000000000000000000000000000000001897 164.0
SHD3_k127_365876_7 PAS domain - - - 0.000000000000000000000001139 120.0
SHD3_k127_365876_9 - - - - 0.000008977 56.0
SHD3_k127_3660349_0 Cation transporter/ATPase, N-terminus K01531 - 3.6.3.2 1.635e-321 1008.0
SHD3_k127_3660349_1 Cytochrome C and Quinol oxidase polypeptide I K04561 - 1.7.2.5 4.258e-319 996.0
SHD3_k127_3660349_11 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000001203 126.0
SHD3_k127_3660349_12 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.0000000000004052 74.0
SHD3_k127_3660349_13 Transglycosylase associated protein - - - 0.000000003527 61.0
SHD3_k127_3660349_14 PFAM Tetratricopeptide repeat - - - 0.00007893 54.0
SHD3_k127_3660349_2 Domain of unknown function (DUF4070) - - - 7.288e-224 704.0
SHD3_k127_3660349_3 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009307 551.0
SHD3_k127_3660349_4 Diacylglycerol kinase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 471.0
SHD3_k127_3660349_5 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008932 407.0
SHD3_k127_3660349_6 SPFH Band 7 PHB domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 396.0
SHD3_k127_3660349_8 Heat shock protein DnaJ domain protein - - - 0.0000000000000000000000000000000000000000001647 168.0
SHD3_k127_366109_0 HI0933-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 544.0
SHD3_k127_366109_1 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007868 353.0
SHD3_k127_366109_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170,K00187 - 1.2.7.1,1.2.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 321.0
SHD3_k127_366109_3 CBD_II K01728 - 4.2.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000004791 256.0
SHD3_k127_366109_4 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000002091 216.0
SHD3_k127_366109_5 Carboxylesterase family - - - 0.0000000000000000000000000001033 126.0
SHD3_k127_3662834_0 Bacterial regulatory protein, Fis family K13599 - - 6.003e-204 650.0
SHD3_k127_3662834_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.000000000000000000000000000000000000000000000000000000000000003595 226.0
SHD3_k127_3662834_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000000000000000372 197.0
SHD3_k127_3662931_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1147.0
SHD3_k127_3662931_1 Nitronate monooxygenase K02371 - 1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 379.0
SHD3_k127_3662931_2 MaoC like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 319.0
SHD3_k127_3662931_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000091 294.0
SHD3_k127_3662931_4 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001899 295.0
SHD3_k127_3662931_5 PFAM short chain dehydrogenase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002006 273.0
SHD3_k127_3662931_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000009951 246.0
SHD3_k127_3662931_7 - - - - 0.000000000000000000000000000000000000000002844 173.0
SHD3_k127_3662931_8 protein kinase activity K12132 - 2.7.11.1 0.00000003288 61.0
SHD3_k127_3667472_0 Alcohol dehydrogenase GroES-like domain K00008 - 1.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 462.0
SHD3_k127_3667472_1 Pectate lyase superfamily protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006525 415.0
SHD3_k127_3667472_2 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000007542 251.0
SHD3_k127_3667472_3 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000002638 252.0
SHD3_k127_3667472_5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000000000000000000001869 114.0
SHD3_k127_3667472_6 lactoylglutathione lyase activity - - - 0.00000000000000006158 86.0
SHD3_k127_3667472_7 Phage late control gene D protein (GPD) - - - 0.000007789 49.0
SHD3_k127_3682668_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 451.0
SHD3_k127_3682668_1 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007136 395.0
SHD3_k127_3682668_3 PFAM glycosyl hydrolase family 88 K15532 - 3.2.1.172 0.000000000000000000000000000000000000000000000000000000000000001124 226.0
SHD3_k127_3682668_4 Glycosyl hydrolase family 30 beta sandwich domain K15924 - 3.2.1.136 0.0000000000000000000000000000000000000000000000003228 196.0
SHD3_k127_3682668_5 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000002708 153.0
SHD3_k127_3682668_7 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000001455 78.0
SHD3_k127_3682668_8 alpha-L-fucosidase K01206 - 3.2.1.51 0.0000003215 55.0
SHD3_k127_3684558_0 Glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2325.0
SHD3_k127_3684558_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 1.217e-265 831.0
SHD3_k127_3684558_10 peptidyl-prolyl cis-trans isomerase activity K03769,K03770,K07533 - 5.2.1.8 0.00000000000000000000000000000000002335 151.0
SHD3_k127_3684558_11 pilus assembly protein PilW K02672 - - 0.0000000000000000000000000000000001294 145.0
SHD3_k127_3684558_13 type IV pilus modification protein PilV K02671,K02681 - - 0.000000000000000000008082 103.0
SHD3_k127_3684558_14 protein transport across the cell outer membrane K02246,K08084 - - 0.0000000000000000001421 100.0
SHD3_k127_3684558_2 Glutamate synthase K00266 - 1.4.1.13,1.4.1.14 9.379e-208 660.0
SHD3_k127_3684558_3 Family membership K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004548 517.0
SHD3_k127_3684558_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003337 274.0
SHD3_k127_3684558_6 protein kinase activity K08884 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000003039 273.0
SHD3_k127_3684558_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001755 243.0
SHD3_k127_3684558_8 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000001988 241.0
SHD3_k127_3684558_9 FHA domain - - - 0.000000000000000000000000000000000000000000000000000000000008504 221.0
SHD3_k127_3700459_0 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 1.13e-224 716.0
SHD3_k127_3700459_1 LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 329.0
SHD3_k127_3700459_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 306.0
SHD3_k127_3700459_3 SMART serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000001632 192.0
SHD3_k127_3700459_4 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins - - - 0.0000000000000000000000000000000000000000000001384 190.0
SHD3_k127_3700459_5 - - - - 0.00000000000000000000000000000000000000003567 155.0
SHD3_k127_3700459_7 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0005976,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008654,GO:0009029,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044464,GO:0046401,GO:0046467,GO:0046493,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.7.1.130 0.0000000000001751 81.0
SHD3_k127_3700459_8 Si dkey-21a6.5 - - - 0.000000005298 68.0
SHD3_k127_3702964_0 Pirin C-terminal cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 365.0
SHD3_k127_3702964_1 cellulase activity - - - 0.000000000000000000001239 111.0
SHD3_k127_3702964_2 RHS Repeat - GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0004549,GO:0006139,GO:0006399,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016078,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901575 - 0.000004127 58.0
SHD3_k127_3706259_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002409 485.0
SHD3_k127_3706259_1 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000002559 215.0
SHD3_k127_3706259_10 - - - - 0.00001538 55.0
SHD3_k127_3706259_11 - - - - 0.00004708 49.0
SHD3_k127_3706259_12 DJ-1/PfpI family K05520 - 3.5.1.124 0.00007884 45.0
SHD3_k127_3706259_13 - - - - 0.0001746 44.0
SHD3_k127_3706259_2 2TM domain - - - 0.0000000000000000000000000000000000004755 149.0
SHD3_k127_3706259_3 - - - - 0.0000000000000000000000000000000000005803 150.0
SHD3_k127_3706259_4 PFAM metallophosphoesterase K07098 - - 0.000000000000000000000000000000001063 144.0
SHD3_k127_3706259_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000005904 68.0
SHD3_k127_3706259_6 histone H2A K63-linked ubiquitination K03220 - - 0.00000000006096 69.0
SHD3_k127_3706259_7 - - - - 0.000000007705 61.0
SHD3_k127_3707074_0 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009175 375.0
SHD3_k127_3707074_1 LysR substrate binding domain K03717 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 355.0
SHD3_k127_3707074_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000001549 99.0
SHD3_k127_3707074_3 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.000000000000000003227 89.0
SHD3_k127_3715539_0 Involved in molybdopterin and thiamine biosynthesis, family 2 K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008274 514.0
SHD3_k127_3715539_1 DNA RNA non-specific endonuclease K01173 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003924 479.0
SHD3_k127_3715539_10 Forkhead associated domain - - - 0.0000000000000000000000000000000000001728 147.0
SHD3_k127_3715539_11 - K13652 - - 0.00000000000439 73.0
SHD3_k127_3715539_12 Bacterial regulatory protein, Fis family K07712 - - 0.000000000262 65.0
SHD3_k127_3715539_13 - - - - 0.0000000003175 70.0
SHD3_k127_3715539_15 peptidyl-tyrosine sulfation - - - 0.000006541 53.0
SHD3_k127_3715539_2 histone H2A K63-linked ubiquitination - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 412.0
SHD3_k127_3715539_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008906 406.0
SHD3_k127_3715539_4 proteolysis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006606 314.0
SHD3_k127_3715539_5 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 310.0
SHD3_k127_3715539_6 PFAM Ubiquitin-conjugating - - - 0.00000000000000000000000000000000000000000000000000000000000001201 234.0
SHD3_k127_3715539_7 Trypsin-like peptidase domain - - - 0.000000000000000000000000000000000000000000000000000000000007759 228.0
SHD3_k127_3715539_9 WXG100 protein secretion system (Wss), protein YukD - - - 0.0000000000000000000000000000000000000000841 154.0
SHD3_k127_3732034_0 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 405.0
SHD3_k127_3732034_1 PFAM Metallophosphoesterase K03547 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006154 309.0
SHD3_k127_3732034_2 FIST N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 295.0
SHD3_k127_3732034_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003564 283.0
SHD3_k127_3732034_4 - - - - 0.00000000000000000000000000000000000000000000000000002293 196.0
SHD3_k127_3732034_5 FIST C domain - - - 0.0000004986 53.0
SHD3_k127_3732034_6 - - - - 0.000006207 58.0
SHD3_k127_3742306_0 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000972 605.0
SHD3_k127_3742306_1 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 541.0
SHD3_k127_3742306_10 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000246 171.0
SHD3_k127_3742306_11 Belongs to the GST superfamily K00799 - 2.5.1.18 0.0000000000000000000000001231 119.0
SHD3_k127_3742306_12 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000002988 103.0
SHD3_k127_3742306_13 oxidoreductase activity K07114 - - 0.000000000000002739 89.0
SHD3_k127_3742306_15 Endonuclease/Exonuclease/phosphatase family - - - 0.00000002378 67.0
SHD3_k127_3742306_16 - - - - 0.0000001645 62.0
SHD3_k127_3742306_2 beta-galactosidase activity K05970 - 3.1.1.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 490.0
SHD3_k127_3742306_3 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 445.0
SHD3_k127_3742306_4 COGs COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase) K05275 - 1.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 401.0
SHD3_k127_3742306_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005005 306.0
SHD3_k127_3742306_6 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 317.0
SHD3_k127_3742306_7 Uncharacterized conserved protein (DUF2183) - - - 0.00000000000000000000000000000000000000000000000000000000000003082 228.0
SHD3_k127_3742306_8 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000000000000000000000000001184 222.0
SHD3_k127_3742306_9 cell septum assembly - - - 0.0000000000000000000000000000000000000000000000000006826 200.0
SHD3_k127_3753327_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 4.767e-240 769.0
SHD3_k127_3753327_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00334,K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003343 608.0
SHD3_k127_3753327_2 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000001924 209.0
SHD3_k127_3753327_3 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000007945 167.0
SHD3_k127_3753327_4 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000001161 149.0
SHD3_k127_3753327_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:0098797,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204 1.6.5.3 0.0000000000000000000000003998 109.0
SHD3_k127_3753327_6 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000001169 98.0
SHD3_k127_3761098_0 Protein conserved in bacteria K09955 - - 1.169e-255 810.0
SHD3_k127_3761098_1 radical SAM K06871 - - 0.0000000000000000000000000000000000000000008173 174.0
SHD3_k127_3773951_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1212.0
SHD3_k127_3773951_1 Belongs to the glycosyl hydrolase 43 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000563 492.0
SHD3_k127_3773951_10 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000007642 145.0
SHD3_k127_3773951_11 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000009685 141.0
SHD3_k127_3773951_12 DnaJ molecular chaperone homology domain K03686 - - 0.00000000000000000000000000000006239 133.0
SHD3_k127_3773951_15 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.0000000000000000000000002253 123.0
SHD3_k127_3773951_16 Pfam:RRM_6 - - - 0.0000000000000000000000004961 114.0
SHD3_k127_3773951_17 Glycosyl hydrolase family 10 K01181 - 3.2.1.8 0.000000000000000001078 97.0
SHD3_k127_3773951_18 General secretion pathway protein C K02452 - - 0.000000006767 65.0
SHD3_k127_3773951_19 Expansin-like protein K20628 - - 0.00000003297 67.0
SHD3_k127_3773951_2 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009524 490.0
SHD3_k127_3773951_20 - - - - 0.0003961 46.0
SHD3_k127_3773951_3 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006232 496.0
SHD3_k127_3773951_4 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 475.0
SHD3_k127_3773951_5 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 363.0
SHD3_k127_3773951_6 Biotin-lipoyl like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004902 341.0
SHD3_k127_3773951_7 Domain of Unknown Function (DUF1259) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 329.0
SHD3_k127_3773951_8 Chromate resistance exported protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007579 312.0
SHD3_k127_3773951_9 outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000002489 239.0
SHD3_k127_3779891_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 6.338e-195 620.0
SHD3_k127_3779891_1 Protein of unknown function (DUF3683) - - - 0.00000000000000000000000000000000000000000000002892 176.0
SHD3_k127_3779891_2 Glucose-6-phosphate dehydrogenase subunit - - - 0.00000008349 64.0
SHD3_k127_3779891_3 permease - - - 0.000004097 57.0
SHD3_k127_3783063_0 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000881 111.0
SHD3_k127_3793380_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0009892,GO:0010605,GO:0016020,GO:0016853,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031324,GO:0032069,GO:0032074,GO:0040007,GO:0043086,GO:0043167,GO:0043169,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0060255,GO:0060700,GO:0060701,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0140097 5.99.1.2 0.0 1047.0
SHD3_k127_3793380_1 Belongs to the peptidase S8 family K08651 - 3.4.21.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 478.0
SHD3_k127_3793380_2 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 368.0
SHD3_k127_3793380_3 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002455 275.0
SHD3_k127_3793380_4 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000001356 220.0
SHD3_k127_3793380_5 PFAM DHH family - - - 0.00000000000000000000000000000000000000000000000000000000001238 221.0
SHD3_k127_3793380_6 serine-type endopeptidase activity - - - 0.000000000000000000000004822 114.0
SHD3_k127_3793380_7 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000002044 103.0
SHD3_k127_3793380_8 Thiamine pyrophosphate protein TPP binding domain protein K01652 - 2.2.1.6 0.0001754 45.0
SHD3_k127_3802793_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000047 252.0
SHD3_k127_3802793_2 zinc-ribbon domain - - - 0.00000000000000000000000000000000000000000000000000000000000000003845 243.0
SHD3_k127_3802793_3 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000001467 209.0
SHD3_k127_3804111_0 dna ligase - - - 2.34e-209 658.0
SHD3_k127_3804111_1 ATP dependent DNA ligase C terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 500.0
SHD3_k127_3804111_10 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.000000000000000003354 86.0
SHD3_k127_3804111_11 peroxiredoxin activity - - - 0.00000000000003256 77.0
SHD3_k127_3804111_12 Protein of unknown function (DUF3829) - - - 0.000001477 56.0
SHD3_k127_3804111_2 lactate racemase activity K22373 - 5.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 419.0
SHD3_k127_3804111_3 galactinol--sucrose galactosyltransferase K06617 - 2.4.1.82 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 427.0
SHD3_k127_3804111_4 BNR repeat-containing family member - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 326.0
SHD3_k127_3804111_5 Glycosyl transferases group 1 K13668 - 2.4.1.346 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 334.0
SHD3_k127_3804111_6 dienelactone hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000001883 239.0
SHD3_k127_3804111_7 Methyltransferase small domain K00598 - 2.1.1.144 0.00000000000000000000000000000000001685 150.0
SHD3_k127_3804111_8 alpha-L-arabinofuranosidase K01209 - 3.2.1.55 0.000000000000000000000000000002394 140.0
SHD3_k127_3804111_9 oxidoreductase activity K07114 - - 0.000000000000000002572 98.0
SHD3_k127_3810780_0 protein containing a von Willebrand factor type A (vWA) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 419.0
SHD3_k127_3810780_1 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 303.0
SHD3_k127_3810780_3 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000925 237.0
SHD3_k127_3810780_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000005074 209.0
SHD3_k127_381130_0 AcrB/AcrD/AcrF family K07787 - - 9.711e-218 711.0
SHD3_k127_381130_1 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 1.2e-200 647.0
SHD3_k127_381130_10 FeoA K04758 - - 0.00000000000000000001663 98.0
SHD3_k127_381130_11 SpoVT AbrB like domain - - - 0.00000000000000009124 82.0
SHD3_k127_381130_12 HlyD membrane-fusion protein of T1SS - - - 0.000000000003789 78.0
SHD3_k127_381130_13 - - - - 0.0000000000272 68.0
SHD3_k127_381130_14 - - - - 0.0000000004468 68.0
SHD3_k127_381130_16 efflux transmembrane transporter activity K15725 - - 0.000178 53.0
SHD3_k127_381130_2 GGGtGRT protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 574.0
SHD3_k127_381130_3 Psort location Cytoplasmic, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 385.0
SHD3_k127_381130_4 Carbohydrate-selective porin, OprB family K16080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 362.0
SHD3_k127_381130_5 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000004073 234.0
SHD3_k127_381130_6 ribonuclease activity - - - 0.000000000000000000000000000000000000000000000000000000008017 201.0
SHD3_k127_381130_7 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000004415 177.0
SHD3_k127_381130_8 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000000000000000449 168.0
SHD3_k127_381130_9 TIGRFAM C_GCAxxG_C_C family - - - 0.00000000000000000000000000000003722 130.0
SHD3_k127_3819847_0 CBD_II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006616 586.0
SHD3_k127_3819847_1 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008248 370.0
SHD3_k127_3819847_2 BNR repeat-containing family member - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003062 337.0
SHD3_k127_3819847_3 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000242 290.0
SHD3_k127_3819847_4 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007004 250.0
SHD3_k127_3819847_5 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000001508 166.0
SHD3_k127_3819847_6 Periplasmic binding protein K01999 - - 0.000000000000000000000000000000005315 146.0
SHD3_k127_3831297_0 Heat shock 70 kDa protein K04043 - - 2.579e-316 980.0
SHD3_k127_3831297_1 homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 389.0
SHD3_k127_3831297_11 Probably functions as a manganese efflux pump - - - 0.0000000000000000000000000000000000000005159 158.0
SHD3_k127_3831297_12 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000001676 153.0
SHD3_k127_3831297_13 HD domain - - - 0.000000000000000000000005805 103.0
SHD3_k127_3831297_15 PFAM Fibronectin, type III domain - - - 0.00000000000000003333 96.0
SHD3_k127_3831297_17 glyoxalase III activity - - - 0.0001138 53.0
SHD3_k127_3831297_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000304 297.0
SHD3_k127_3831297_4 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007108 275.0
SHD3_k127_3831297_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000224 254.0
SHD3_k127_3831297_6 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000008168 233.0
SHD3_k127_3831297_7 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000000002787 203.0
SHD3_k127_3831297_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000004265 184.0
SHD3_k127_3831297_9 - - - - 0.0000000000000000000000000000000000000001295 164.0
SHD3_k127_3836270_0 AcrB/AcrD/AcrF family - - - 2.993e-305 968.0
SHD3_k127_3836270_1 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003505 295.0
SHD3_k127_3836270_3 Glycosyl hydrolase family 12 - - - 0.00000000000157 79.0
SHD3_k127_3836270_4 oligosaccharyl transferase activity - - - 0.00000005761 66.0
SHD3_k127_3839210_0 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 301.0
SHD3_k127_3839210_1 serine-type endopeptidase activity K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000004981 265.0
SHD3_k127_3839210_2 - - - - 0.00000000000000000000000000009114 135.0
SHD3_k127_3839210_3 - - - - 0.0000000249 68.0
SHD3_k127_3839210_4 - - - - 0.0000001057 63.0
SHD3_k127_3840859_0 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 298.0
SHD3_k127_3840859_1 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000157 186.0
SHD3_k127_3840859_2 Peptidase family M48 - - - 0.0007833 48.0
SHD3_k127_3844484_0 Domain of unknown function (DUF4139) - - - 3.172e-247 785.0
SHD3_k127_3844484_1 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III domain protein K01641 - 2.3.3.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 472.0
SHD3_k127_3844484_10 O-methyltransferase, family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000002585 246.0
SHD3_k127_3844484_11 ABC 3 transport family K09816 - - 0.000000000000000000000000000000000000000000000000000000000000000005622 238.0
SHD3_k127_3844484_12 ABC transporter K09817 - - 0.000000000000000000000000000000000000000000000000000000001799 208.0
SHD3_k127_3844484_13 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.00000000000000000000000000000000000000002455 156.0
SHD3_k127_3844484_14 repeat protein - - - 0.0000000000000000000000000000261 136.0
SHD3_k127_3844484_15 DNA-templated transcription, initiation K03088 - - 0.00000000000000000007608 99.0
SHD3_k127_3844484_16 Ferredoxin - - - 0.0000000000000000001007 104.0
SHD3_k127_3844484_17 Alanine-glyoxylate amino-transferase K05825 - - 0.0000000000000000006865 100.0
SHD3_k127_3844484_18 protein trimerization - - - 0.0000000000002716 83.0
SHD3_k127_3844484_2 Tfp pilus assembly protein FimV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 457.0
SHD3_k127_3844484_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 435.0
SHD3_k127_3844484_4 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004749 403.0
SHD3_k127_3844484_5 Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) K01823 - 5.3.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 402.0
SHD3_k127_3844484_6 PFAM DNA methylase N-4 N-6 domain protein K00571 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 395.0
SHD3_k127_3844484_7 Belongs to the bacterial solute-binding protein 9 family K02077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 293.0
SHD3_k127_3844484_8 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001696 296.0
SHD3_k127_3844484_9 Polyprenyl synthetase K13787 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000001968 272.0
SHD3_k127_3848854_0 C-terminal, D2-small domain, of ClpB protein K03696 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 602.0
SHD3_k127_3848854_1 Two component, sigma54 specific, transcriptional regulator, Fis family K07712 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 549.0
SHD3_k127_3848854_10 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.000000000000000000000000000000000000000000000000000000000000007799 223.0
SHD3_k127_3848854_11 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000001064 235.0
SHD3_k127_3848854_12 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000001101 208.0
SHD3_k127_3848854_13 CMP dCMP deaminase, zinc-binding - - - 0.00000000000000000000000000000000000000000000000005447 184.0
SHD3_k127_3848854_14 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000002242 188.0
SHD3_k127_3848854_16 - - - - 0.000000000000000000000000000000001521 138.0
SHD3_k127_3848854_17 PEGA domain - - - 0.0000003092 61.0
SHD3_k127_3848854_18 HNH endonuclease - - - 0.000007965 59.0
SHD3_k127_3848854_19 Calcium-binding EGF-like domain - GO:0002009,GO:0002165,GO:0003674,GO:0005198,GO:0005201,GO:0005575,GO:0005576,GO:0007275,GO:0007424,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007552,GO:0007560,GO:0007591,GO:0008150,GO:0008362,GO:0008587,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0022404,GO:0031012,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040003,GO:0040005,GO:0042303,GO:0042335,GO:0044421,GO:0044719,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0060429,GO:0060541,GO:0060562,GO:0065007,GO:0065008,GO:0090066 - 0.00002731 51.0
SHD3_k127_3848854_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 370.0
SHD3_k127_3848854_20 belongs to the sigma-70 factor family - - - 0.00002827 55.0
SHD3_k127_3848854_21 Nodulation protein S (NodS) - - - 0.00003023 57.0
SHD3_k127_3848854_22 von Willebrand factor (vWF) type A domain - - - 0.0005321 52.0
SHD3_k127_3848854_3 Methyltransferase type 12 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000686 377.0
SHD3_k127_3848854_4 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008707 357.0
SHD3_k127_3848854_5 Family membership K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 347.0
SHD3_k127_3848854_6 SagB-type dehydrogenase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 301.0
SHD3_k127_3848854_7 Domain of unknown function (DUF4178) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 307.0
SHD3_k127_3848854_8 Family membership K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005769 299.0
SHD3_k127_3860265_0 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 629.0
SHD3_k127_3860265_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 343.0
SHD3_k127_3860265_2 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000000000000259 206.0
SHD3_k127_3860265_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000003176 159.0
SHD3_k127_3860265_6 pilus assembly protein PilW K02672 - - 0.0000003972 54.0
SHD3_k127_3885057_0 Pfam Sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 496.0
SHD3_k127_3885057_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000001296 69.0
SHD3_k127_3885730_0 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 472.0
SHD3_k127_3885730_1 Pfam:KaiC K08482 - - 0.0000000000000000000000001156 109.0
SHD3_k127_3891298_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1291.0
SHD3_k127_3891298_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 6.453e-244 765.0
SHD3_k127_3891298_10 - - - - 0.0000000000000000000000000000000000000000000000000000000000006022 225.0
SHD3_k127_3891298_11 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000005124 221.0
SHD3_k127_3891298_12 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000006279 203.0
SHD3_k127_3891298_13 Protein of unknown function (DUF1232) - - - 0.0000000000000000000000000000000000009205 144.0
SHD3_k127_3891298_15 Outer membrane lipoprotein carrier protein LolA - - - 0.000000000000000000001676 102.0
SHD3_k127_3891298_16 - - - - 0.000000000000001701 86.0
SHD3_k127_3891298_17 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000005667 62.0
SHD3_k127_3891298_18 peptidyl-tyrosine sulfation - - - 0.0000001641 63.0
SHD3_k127_3891298_19 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.000002282 55.0
SHD3_k127_3891298_2 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 559.0
SHD3_k127_3891298_20 Domain of unknown function (DUF4423) - - - 0.000002346 54.0
SHD3_k127_3891298_21 extracellular matrix K17885 GO:0001655,GO:0001656,GO:0001822,GO:0002009,GO:0003338,GO:0005575,GO:0005576,GO:0005604,GO:0006810,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0015031,GO:0015833,GO:0030326,GO:0031012,GO:0032501,GO:0032502,GO:0033036,GO:0035107,GO:0035108,GO:0035113,GO:0042886,GO:0043588,GO:0044420,GO:0044421,GO:0045184,GO:0048513,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051234,GO:0060021,GO:0060173,GO:0060429,GO:0060993,GO:0061618,GO:0062023,GO:0071702,GO:0071705,GO:0072001 - 0.000003356 62.0
SHD3_k127_3891298_22 von Willebrand factor (vWF) type A domain - - - 0.0004148 51.0
SHD3_k127_3891298_3 MMPL family K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 537.0
SHD3_k127_3891298_4 Transglycosylase SLT domain K08306,K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 475.0
SHD3_k127_3891298_5 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007037 369.0
SHD3_k127_3891298_6 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008347 298.0
SHD3_k127_3891298_7 serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001641 273.0
SHD3_k127_3891298_8 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000006683 258.0
SHD3_k127_3891298_9 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005593 246.0
SHD3_k127_3901137_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003794 317.0
SHD3_k127_3901137_1 Belongs to the glycosyl hydrolase 30 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003614 301.0
SHD3_k127_3901137_11 domain, Protein - - - 0.00002747 55.0
SHD3_k127_3901137_12 domain, Protein K00573,K02335 - 2.1.1.77,2.7.7.7 0.0003535 52.0
SHD3_k127_3901137_2 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001806 283.0
SHD3_k127_3901137_3 PFAM Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000002456 271.0
SHD3_k127_3901137_4 Alpha-L-arabinofuranosidase domain protein K01209 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000001063 258.0
SHD3_k127_3901137_5 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000009324 168.0
SHD3_k127_3901137_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000002563 136.0
SHD3_k127_3901137_7 Polysaccharide lyase - - - 0.0000000000000000000006748 106.0
SHD3_k127_3901137_8 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000007352 78.0
SHD3_k127_3901137_9 - - - - 0.0000000003602 70.0
SHD3_k127_3910942_0 cell wall organization K18197 - 4.2.2.23 7.402e-243 794.0
SHD3_k127_3910942_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000004822 124.0
SHD3_k127_3910942_2 SPTR Fibronectin type III domain protein - - - 0.00000000000007278 85.0
SHD3_k127_3919077_0 PFAM Cytochrome c oxidase, subunit I K04561 - 1.7.2.5 0.0 1045.0
SHD3_k127_3919077_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. K12266 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006799 574.0
SHD3_k127_3919077_10 aminopeptidase N - - - 0.000000000000000000000000000000000000000000000000000781 201.0
SHD3_k127_3919077_11 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000001964 177.0
SHD3_k127_3919077_12 ABC-type sugar transport system periplasmic component K02058,K10439 - - 0.0000000000000000000000000000000000000000000002199 180.0
SHD3_k127_3919077_13 PFAM Hemerythrin HHE cation binding domain protein - - - 0.000000000000000000000000003264 117.0
SHD3_k127_3919077_14 protein kinase activity - - - 0.00000000000000000442 94.0
SHD3_k127_3919077_15 Chorismate mutase type II K04093 - 5.4.99.5 0.000000000000000834 81.0
SHD3_k127_3919077_16 hemerythrin HHE cation binding domain - - - 0.00000000003266 66.0
SHD3_k127_3919077_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 435.0
SHD3_k127_3919077_3 imidazoleglycerol-phosphate synthase activity K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 386.0
SHD3_k127_3919077_4 HEAT repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 363.0
SHD3_k127_3919077_5 O-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000343 267.0
SHD3_k127_3919077_6 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000000000000000000006663 241.0
SHD3_k127_3919077_7 glutamine metabolic process K02501 - - 0.000000000000000000000000000000000000000000000000000000000000005866 224.0
SHD3_k127_3919077_8 COG0451 Nucleoside-diphosphate-sugar epimerases K00091 - 1.1.1.219 0.0000000000000000000000000000000000000000000000000000000000002493 224.0
SHD3_k127_3919077_9 - - - - 0.000000000000000000000000000000000000000000000000000000002781 209.0
SHD3_k127_3919550_0 Tetratricopeptide repeat - - - 0.0 1206.0
SHD3_k127_3919550_1 Tetratricopeptide repeat - - - 9.778e-296 978.0
SHD3_k127_3919550_10 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000002716 247.0
SHD3_k127_3919550_11 Pyrroloquinoline quinone biosynthesis protein E - - - 0.000000000000000000000000000000000000000000000000000000000000002482 231.0
SHD3_k127_3919550_12 Pyrroloquinoline quinone biosynthesis protein E - - - 0.0000000000000000000000000000000000000000000000000000000000006783 224.0
SHD3_k127_3919550_13 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000000000000000005466 117.0
SHD3_k127_3919550_15 Histidine kinase-like ATPases - - - 0.000000000000000000000009254 103.0
SHD3_k127_3919550_16 peptidyl-tyrosine sulfation - - - 0.000000000000000000006931 102.0
SHD3_k127_3919550_2 Domain of unknown function (DUF1846) - - - 3.934e-238 745.0
SHD3_k127_3919550_3 SNF2 family N-terminal domain - - - 1.146e-210 693.0
SHD3_k127_3919550_4 zinc-ribbon domain - - - 7.414e-201 675.0
SHD3_k127_3919550_5 electron transfer activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 535.0
SHD3_k127_3919550_6 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000803 297.0
SHD3_k127_3919550_7 CAAX protease self-immunity K07052,K09696 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003389 295.0
SHD3_k127_3919550_8 PFAM Methyltransferase type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003724 286.0
SHD3_k127_3919550_9 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000485 287.0
SHD3_k127_3928463_0 signal peptide peptidase SppA, 36K type K04773 - - 1.475e-216 706.0
SHD3_k127_3928463_1 Male sterility protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008015 408.0
SHD3_k127_3928463_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 350.0
SHD3_k127_3928463_3 polygalacturonase activity K01184 - 3.2.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004035 353.0
SHD3_k127_3928463_4 Metallopeptidase family M24 - - - 0.00000000000000000000000000000000000000000000001006 186.0
SHD3_k127_3928463_5 FAD linked oxidase domain protein - - - 0.00000000000000000000000000000000001097 139.0
SHD3_k127_3928463_6 Oxidoreductase - - - 0.00000000000000000001135 104.0
SHD3_k127_3928463_7 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000002301 89.0
SHD3_k127_3928463_8 ABC transporter K01990 - - 0.00001023 57.0
SHD3_k127_3935245_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001503 230.0
SHD3_k127_3935245_1 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000009772 233.0
SHD3_k127_3935245_2 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.0000000000000000000000000000000004833 134.0
SHD3_k127_3935245_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000001787 119.0
SHD3_k127_3935245_4 domain, Protein - - - 0.00000000000009704 82.0
SHD3_k127_3935245_5 - - - - 0.000000000005401 76.0
SHD3_k127_3935245_6 PFAM Methylene-tetrahydrofolate reductase C terminal - - - 0.0000000174 56.0
SHD3_k127_3941787_0 transcription factor binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 453.0
SHD3_k127_3941787_1 Glycosyl Hydrolase Family 88 K15532 - 3.2.1.172 0.00000000000000000000000000000000000000000000000000000000000000000001634 257.0
SHD3_k127_3941787_2 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.000000000000000000000000000000000000000000000000007249 193.0
SHD3_k127_3941787_3 - - - - 0.000000001749 66.0
SHD3_k127_3941787_4 PFAM PspA IM30 K03969 - - 0.00001975 55.0
SHD3_k127_3948933_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 2.419e-212 672.0
SHD3_k127_3948933_1 protein kinase activity - - - 0.00000000000000004597 91.0
SHD3_k127_3948933_2 SMART Elongator protein 3 MiaB NifB - - - 0.000000000003661 80.0
SHD3_k127_39531_0 GDP-mannose 4,6 dehydratase K20534 - - 2.608e-244 772.0
SHD3_k127_39531_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 2.72e-217 683.0
SHD3_k127_39531_10 YceI-like domain - - - 0.00000005019 63.0
SHD3_k127_39531_11 pyrroloquinoline quinone binding - - - 0.00000006581 65.0
SHD3_k127_39531_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008616 260.0
SHD3_k127_39531_3 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000000000001263 195.0
SHD3_k127_39531_4 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000002893 145.0
SHD3_k127_39531_5 Lysylphosphatidylglycerol synthase TM region - - - 0.00000000000000000000000000000002215 139.0
SHD3_k127_39531_6 Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.000000000000000000000000000001517 130.0
SHD3_k127_39531_7 PFAM transferase hexapeptide repeat containing protein - - - 0.00000000000000000000005913 104.0
SHD3_k127_39531_8 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000007859 100.0
SHD3_k127_395556_0 - - - - 0.00000000000000000000000000003567 126.0
SHD3_k127_395556_1 phosphorelay signal transduction system - - - 0.0000001139 62.0
SHD3_k127_395556_2 Peptidyl-prolyl cis-trans isomerase - - - 0.00001558 57.0
SHD3_k127_3963723_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 589.0
SHD3_k127_3963723_1 SMP-30/Gluconolaconase/LRE-like region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 323.0
SHD3_k127_3963723_3 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000005993 87.0
SHD3_k127_3963723_4 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000006912 59.0
SHD3_k127_3963723_5 Psort location Cytoplasmic, score - - - 0.0002372 48.0
SHD3_k127_3963723_6 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000248 52.0
SHD3_k127_3975939_0 Tetratricopeptide repeats - - - 0.0 1269.0
SHD3_k127_3975939_1 Cellobiose phosphorylase K00702 - 2.4.1.20 0.0 1238.0
SHD3_k127_3975939_2 CBD_II K01179 - 3.2.1.4 1.109e-239 751.0
SHD3_k127_3975939_3 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 340.0
SHD3_k127_3975939_4 transcription factor binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 341.0
SHD3_k127_3975939_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002633 290.0
SHD3_k127_3975939_6 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000003604 201.0
SHD3_k127_3975939_7 phosphorelay sensor kinase activity - - - 0.00000000000000000000000000000000000000000000000003409 204.0
SHD3_k127_3975939_8 CBD_II K01179 - 3.2.1.4 0.000000000000000000000000000000000000001462 153.0
SHD3_k127_3977950_0 virulence plasmid 65kDa B protein - - - 0.00000000000000000000000000001924 136.0
SHD3_k127_3977950_1 HTH-like domain K07497 - - 0.00000000000006241 84.0
SHD3_k127_3989373_0 Involved in the tonB-independent uptake of proteins K03641 - - 2.91e-293 922.0
SHD3_k127_3989373_1 Domain of unknown function (DUF4215) - - - 4.688e-212 693.0
SHD3_k127_3989373_2 Esterase PHB depolymerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 593.0
SHD3_k127_3989373_3 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000000492 212.0
SHD3_k127_3989373_4 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767 - 5.2.1.8 0.0000000000000000000002897 108.0
SHD3_k127_3989373_5 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000005157 63.0
SHD3_k127_398945_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000002513 216.0
SHD3_k127_398945_1 phosphorelay signal transduction system K02477,K07705,K21696 GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000001135 212.0
SHD3_k127_398945_2 DJ-1/PfpI family - - - 0.0000000000000000000001606 97.0
SHD3_k127_398945_3 lyase activity - - - 0.0000000000000000004202 96.0
SHD3_k127_398945_4 cellulose binding K01179,K01218 GO:0003674,GO:0005488,GO:0005515,GO:0042802 3.2.1.4,3.2.1.78 0.000000000000005263 89.0
SHD3_k127_3999601_0 KaiC K08482 - - 1.516e-239 760.0
SHD3_k127_3999601_1 PhoQ Sensor - - - 0.00001009 55.0
SHD3_k127_4008314_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 344.0
SHD3_k127_4008314_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000005875 218.0
SHD3_k127_4008314_2 - - - - 0.000000000000000000000000000000000000998 156.0
SHD3_k127_4008314_3 lactoylglutathione lyase activity K01759,K08234 - 4.4.1.5 0.0000000000000000000000000006295 117.0
SHD3_k127_4019283_0 protein kinase activity - - - 2.2e-266 837.0
SHD3_k127_4019283_1 Surface antigen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 519.0
SHD3_k127_4019283_3 - - - - 0.000000000000000000000000000000000004377 149.0
SHD3_k127_402245_0 Belongs to the GPI family K01810 GO:0003674,GO:0003824,GO:0004347,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033554,GO:0034404,GO:0034599,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042802,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0055086,GO:0070887,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.3.1.9 7.556e-260 815.0
SHD3_k127_402245_1 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 1.004e-216 693.0
SHD3_k127_402245_2 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003169 303.0
SHD3_k127_402245_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 293.0
SHD3_k127_402245_4 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001148 256.0
SHD3_k127_402245_5 Metal dependent phosphohydrolases with conserved 'HD' motif. K06950 - - 0.00000000000000000000000000000000000000000000008251 179.0
SHD3_k127_402245_7 Belongs to the glycosyl hydrolase 43 family K01198,K01209 - 3.2.1.37,3.2.1.55 0.00000000000000000004977 94.0
SHD3_k127_402245_8 - - - - 0.00000000000003073 81.0
SHD3_k127_4022469_0 Glycosyl hydrolases family 2 K01190 - 3.2.1.23 1.054e-248 802.0
SHD3_k127_4022469_1 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005706 360.0
SHD3_k127_4022469_2 COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001146 284.0
SHD3_k127_4022469_3 SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity K03547 - - 0.000000000000000000000000000000000000000004513 162.0
SHD3_k127_4022469_4 TipAS antibiotic-recognition domain - - - 0.0000000000000000000000000000000000000007565 157.0
SHD3_k127_4022469_5 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000001874 136.0
SHD3_k127_4022469_6 Calcium/calmodulin dependent protein kinase II association domain - - - 0.000000000000000000000000000000008756 134.0
SHD3_k127_4022469_7 YCII-related domain - - - 0.000000000000000000000000000004377 125.0
SHD3_k127_4022469_8 - - - - 0.000000000000004712 79.0
SHD3_k127_4026932_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1040.0
SHD3_k127_4026932_1 synthase K00705,K06044 GO:0000272,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005984,GO:0005991,GO:0005992,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009251,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0030978,GO:0030980,GO:0034637,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0047470,GO:0071704,GO:1901575,GO:1901576 2.4.1.25,5.4.99.15 9.829e-270 856.0
SHD3_k127_4026932_10 peroxidase activity K00435 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009286 258.0
SHD3_k127_4026932_11 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000002024 216.0
SHD3_k127_4026932_12 - - - - 0.00000000000000000000000000000000000000000000000000000001322 207.0
SHD3_k127_4026932_13 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000001001 114.0
SHD3_k127_4026932_14 Sugar (and other) transporter - - - 0.00000000000000000000000002361 111.0
SHD3_k127_4026932_15 Flagellar biosynthetic protein FliQ K02420,K03227 - - 0.000000000006114 69.0
SHD3_k127_4026932_16 Heavy-metal resistance - - - 0.00000000002368 72.0
SHD3_k127_4026932_2 TIGRFAM malto-oligosyltrehalose trehalohydrolase K01236 - 3.2.1.141 3.607e-226 719.0
SHD3_k127_4026932_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 546.0
SHD3_k127_4026932_4 tRNA synthetases class II (D, K and N) K04568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 298.0
SHD3_k127_4026932_5 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006257 291.0
SHD3_k127_4026932_6 Imidazoleglycerol-phosphate dehydratase K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008769 279.0
SHD3_k127_4026932_7 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002953 274.0
SHD3_k127_4026932_8 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007812 270.0
SHD3_k127_4039316_0 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 503.0
SHD3_k127_4039316_1 aspartate--ammonia ligase K01914 - 6.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 459.0
SHD3_k127_4039316_2 Vault protein inter-alpha-trypsin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 417.0
SHD3_k127_4039316_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006655 347.0
SHD3_k127_4039316_4 Integral membrane protein TerC family K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001351 279.0
SHD3_k127_4039998_0 protein conserved in cyanobacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006595 259.0
SHD3_k127_4039998_1 Domain of unknown function (DUF4143) K07133 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001608 260.0
SHD3_k127_4039998_2 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002393 244.0
SHD3_k127_4045588_0 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000656 437.0
SHD3_k127_4045588_1 STAS domain K17763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 311.0
SHD3_k127_4045588_2 anti-sigma regulatory factor K17752 - 2.7.11.1 0.0000000000000000000000000000000000000000009675 160.0
SHD3_k127_4045588_3 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000001896 158.0
SHD3_k127_4045588_4 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000000000007616 149.0
SHD3_k127_4045588_5 STAS domain K17762 - - 0.0000000000000000000000000000000000148 143.0
SHD3_k127_4074947_0 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 546.0
SHD3_k127_4074947_1 MCM2/3/5 family K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 455.0
SHD3_k127_4074947_11 Protein of unknown function (DUF1015) - - - 0.000000008232 58.0
SHD3_k127_4074947_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003835 353.0
SHD3_k127_4074947_3 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003786 327.0
SHD3_k127_4074947_6 - - - - 0.000000000000000000000000000000000000000211 154.0
SHD3_k127_4074947_7 COGs COG2442 conserved - - - 0.000000000000000000000000002203 119.0
SHD3_k127_4074947_8 mRNA binding - - - 0.00000000000000000000001888 100.0
SHD3_k127_4074947_9 PFAM Uncharacterised protein family UPF0150 - - - 0.0000000000005245 71.0
SHD3_k127_4084249_0 3-beta hydroxysteroid dehydrogenase/isomerase family K03274 - 5.1.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 346.0
SHD3_k127_4084249_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007788 323.0
SHD3_k127_4084249_2 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000000000000000001656 216.0
SHD3_k127_4084249_3 Polynucleotide kinase 3 phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000001301 141.0
SHD3_k127_4087236_0 FAD linked oxidase domain protein - - - 0.0 1202.0
SHD3_k127_4087236_1 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007234 494.0
SHD3_k127_4087236_2 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 329.0
SHD3_k127_4087236_3 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000001927 242.0
SHD3_k127_4104115_0 NAD(P)H-binding K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 476.0
SHD3_k127_4104115_1 GHMP kinases N terminal domain K07031 - 2.7.1.168 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 465.0
SHD3_k127_4104115_2 Glycosyltransferase like family 2 K20534 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 443.0
SHD3_k127_4104115_3 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 427.0
SHD3_k127_4104115_5 Transaldolase K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 324.0
SHD3_k127_4104115_6 D-glycero-D-manno-heptose 7-phosphate metabolic process K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 316.0
SHD3_k127_4104115_7 methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006036 257.0
SHD3_k127_4104115_8 HAD-hyrolase-like - - - 0.000000000000000000000000000000000000000000000000000000000000004547 226.0
SHD3_k127_4104115_9 Family membership K08884 - 2.7.11.1 0.000000000000000000002399 99.0
SHD3_k127_4111641_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 7.118e-199 627.0
SHD3_k127_4111641_1 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 314.0
SHD3_k127_4111641_10 - - - - 0.000006097 56.0
SHD3_k127_4111641_4 Transcriptional - - - 0.0000000000000000000000001835 111.0
SHD3_k127_4111641_5 signal sequence binding - - - 0.000000000000000000000001894 111.0
SHD3_k127_4111641_6 PPIC-type PPIASE domain - - - 0.000000000000000000003807 99.0
SHD3_k127_4111641_7 - - - - 0.000000000000001557 87.0
SHD3_k127_4111641_8 - - - - 0.0000000004093 63.0
SHD3_k127_4117987_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0 1217.0
SHD3_k127_4117987_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 2.354e-249 801.0
SHD3_k127_4117987_10 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003103 269.0
SHD3_k127_4117987_11 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000001147 232.0
SHD3_k127_4117987_12 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000002641 228.0
SHD3_k127_4117987_13 PFAM Dimethylmenaquinone methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000002399 233.0
SHD3_k127_4117987_14 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000000003884 190.0
SHD3_k127_4117987_15 Belongs to the precorrin methyltransferase family K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.00000000000000000000000000000000000000002067 162.0
SHD3_k127_4117987_16 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000001656 149.0
SHD3_k127_4117987_17 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.0000000000000000000000000000000000004231 143.0
SHD3_k127_4117987_2 ABC transporter transmembrane region K06147,K18890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005642 568.0
SHD3_k127_4117987_21 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 GO:0005575,GO:0005623,GO:0005886,GO:0009288,GO:0009425,GO:0016020,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464,GO:0071944 - 0.0000000005409 71.0
SHD3_k127_4117987_22 bacterial-type flagellum organization K02411,K03223 - - 0.00001066 55.0
SHD3_k127_4117987_3 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 546.0
SHD3_k127_4117987_4 AAA C-terminal domain K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 540.0
SHD3_k127_4117987_5 Belongs to the SAICAR synthetase family K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 443.0
SHD3_k127_4117987_6 Phosphodiester glycosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 411.0
SHD3_k127_4117987_7 ABC transporter transmembrane region K06147,K18889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 353.0
SHD3_k127_4117987_8 ATPases associated with a variety of cellular activities K05847 GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0031460,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0072337 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 288.0
SHD3_k127_4117987_9 Inositol monophosphatase family K01092,K05602 - 3.1.3.15,3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001008 285.0
SHD3_k127_4120616_0 Nodulation protein S (NodS) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006818 270.0
SHD3_k127_4120616_1 Serine aminopeptidase, S33 K06889 - - 0.00000000000000000000000000000000000000000000000000000000000002102 233.0
SHD3_k127_4120616_2 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000000001536 85.0
SHD3_k127_4120616_3 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000008325 70.0
SHD3_k127_413476_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.0 1074.0
SHD3_k127_413476_1 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 9.188e-288 905.0
SHD3_k127_413476_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 - 3.6.3.12 1.265e-264 826.0
SHD3_k127_413476_3 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 - 3.6.3.12 0.000000000000000000000000000000000000000000000000000000000000000004984 237.0
SHD3_k127_4140279_0 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 1.672e-211 663.0
SHD3_k127_4140279_1 Vitamin K epoxide reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 404.0
SHD3_k127_4140279_11 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000008715 92.0
SHD3_k127_4140279_12 duf218 domain protein - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000003756 71.0
SHD3_k127_4140279_2 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 398.0
SHD3_k127_4140279_3 Phosphoglycerate mutase family K01834 - 5.4.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 359.0
SHD3_k127_4140279_4 transferase activity, transferring glycosyl groups K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 365.0
SHD3_k127_4140279_5 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine K00651 - 2.3.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 302.0
SHD3_k127_4140279_6 chlorophyll binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002103 286.0
SHD3_k127_4140279_7 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000000000000000000000000000000000000000000000000000000000000000000262 242.0
SHD3_k127_4140279_8 VKc - - - 0.0000000000000000000000000000000000000000000000000000000000000006318 235.0
SHD3_k127_4140279_9 negative regulation of translational initiation - - - 0.000000000000000000000000000000000003136 145.0
SHD3_k127_4155925_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1068.0
SHD3_k127_4155925_1 PFAM methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002607 254.0
SHD3_k127_4155925_2 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000007026 175.0
SHD3_k127_4160706_0 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 486.0
SHD3_k127_4160706_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 328.0
SHD3_k127_4160706_2 HEAT repeat - - - 0.000000000000000000000000000000000000000000000000000000000288 227.0
SHD3_k127_4160706_3 Two component signalling adaptor domain K03408 - - 0.000000000000000000000000000000000000000002274 160.0
SHD3_k127_4160706_4 Two component signalling adaptor domain K03408 - - 0.0000000000000000000000000000000000000174 149.0
SHD3_k127_4160706_5 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000001853 124.0
SHD3_k127_4165388_0 PFAM regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000000000000000000000000000000000000004153 240.0
SHD3_k127_4165388_1 Lytic transglycolase K20628 - - 0.00000000000000000000000000000000000000000000000000000000000000004776 229.0
SHD3_k127_4165388_2 dockerin type K15924 - 3.2.1.136 0.00000000000000000000000000000000002051 151.0
SHD3_k127_4165388_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.0000000000000000000000002084 115.0
SHD3_k127_4165388_4 YHS domain K01533,K17686 - 3.6.3.4,3.6.3.54 0.000000000002538 68.0
SHD3_k127_4178996_0 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008307 600.0
SHD3_k127_4178996_1 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005617 422.0
SHD3_k127_4178996_11 PFAM peptidase S1 and S6, chymotrypsin Hap - - - 0.000001047 62.0
SHD3_k127_4178996_12 TonB dependent receptor K02014 - - 0.000001439 61.0
SHD3_k127_4178996_13 protein import - - - 0.000002414 60.0
SHD3_k127_4178996_2 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002674 306.0
SHD3_k127_4178996_3 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006228 303.0
SHD3_k127_4178996_4 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000000005406 220.0
SHD3_k127_4178996_5 Family membership K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000001354 225.0
SHD3_k127_4178996_6 HEAT repeats - - - 0.00000000000000000000000000000000000000000000000000000006977 211.0
SHD3_k127_4178996_7 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000011 164.0
SHD3_k127_4178996_9 - - - - 0.000000000000000000000000002029 120.0
SHD3_k127_4183635_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 474.0
SHD3_k127_4183635_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007953 280.0
SHD3_k127_4183635_3 PFAM Pentapeptide repeats (8 copies) - - - 0.000000000000008112 78.0
SHD3_k127_4195716_0 PFAM tRNA rRNA methyltransferase (SpoU) K03437 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007626 280.0
SHD3_k127_4195716_1 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000001608 171.0
SHD3_k127_4195716_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000005566 96.0
SHD3_k127_4195716_3 phosphomannomutase K15778 - 5.4.2.2,5.4.2.8 0.00000000000003354 88.0
SHD3_k127_4195716_4 alpha beta alpha domain I K15778 - 5.4.2.2,5.4.2.8 0.00000003107 68.0
SHD3_k127_4195716_5 - - - - 0.0003508 50.0
SHD3_k127_420659_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000002768 202.0
SHD3_k127_420659_1 phosphatase - - - 0.000000000000000000000000000000000236 153.0
SHD3_k127_4211833_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005154 479.0
SHD3_k127_4211833_1 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 322.0
SHD3_k127_4211833_2 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008163 303.0
SHD3_k127_4211833_3 PKD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000002246 250.0
SHD3_k127_4211833_4 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000007054 237.0
SHD3_k127_4211833_5 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000000000000000000000000003769 116.0
SHD3_k127_4211833_6 PKD domain - - - 0.00000000000000000000006097 106.0
SHD3_k127_4218808_0 Domain present in PSD-95, Dlg, and ZO-1/2. K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 394.0
SHD3_k127_4218808_1 EAL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004324 288.0
SHD3_k127_4218808_2 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.0000000000000000000000000000000000000000000000000000000004266 204.0
SHD3_k127_4218808_3 - - - - 0.00003094 54.0
SHD3_k127_4219186_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002975 379.0
SHD3_k127_4219186_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 330.0
SHD3_k127_4219186_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005441 332.0
SHD3_k127_4219186_3 Cytochrome C assembly protein - - - 0.00000000000000000000000000000000000000000008983 169.0
SHD3_k127_4219186_4 Histidine kinase K02482 - 2.7.13.3 0.00000000000000000000000000000005226 142.0
SHD3_k127_4219186_5 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000001346 131.0
SHD3_k127_4219186_6 PQQ-like domain - - - 0.000000000000000000000000000003562 139.0
SHD3_k127_4219186_7 Bacterial regulatory protein, Fis family - - - 0.0000000000000000001114 101.0
SHD3_k127_4226735_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006554 485.0
SHD3_k127_4226735_1 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 466.0
SHD3_k127_4226735_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006726 379.0
SHD3_k127_4226735_3 ATP-grasp - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 342.0
SHD3_k127_4226735_4 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 298.0
SHD3_k127_4226735_5 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000002081 209.0
SHD3_k127_4226735_6 GDSL-like Lipase/Acylhydrolase - - - 0.0000000000000000000000000000000000000001206 154.0
SHD3_k127_422774_0 Superfamily II DNA RNA helicases, SNF2 family - - - 0.0 1134.0
SHD3_k127_422774_1 Belongs to the glycosyl hydrolase 67 family K01235 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010383,GO:0010410,GO:0010413,GO:0016052,GO:0016787,GO:0016798,GO:0033939,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044260,GO:0045491,GO:0045493,GO:0071554,GO:0071704,GO:1901575,GO:2000886 3.2.1.139 0.0 1119.0
SHD3_k127_422774_10 PFAM chemotaxis K03406,K07216 - - 0.0000000000000000000000000000000515 130.0
SHD3_k127_422774_11 serine-type endopeptidase activity - - - 0.0000000000000000000000005839 123.0
SHD3_k127_422774_12 Lipoprotein amino terminal region - - - 0.00000000000000005098 96.0
SHD3_k127_422774_13 Glycoside-hydrolase family GH114 - - - 0.000000000000008807 78.0
SHD3_k127_422774_14 histone H2A K63-linked ubiquitination - - - 0.0000000002894 71.0
SHD3_k127_422774_15 HEAT repeat - - - 0.0000002056 64.0
SHD3_k127_422774_16 Trypsin-like serine protease - - - 0.00001368 57.0
SHD3_k127_422774_17 C-type lectin (CTL) or carbohydrate-recognition domain (CRD) K22244 GO:0003674,GO:0005488,GO:0030246 - 0.0002088 56.0
SHD3_k127_422774_2 Belongs to the peptidase S8 family K08651 - 3.4.21.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003777 467.0
SHD3_k127_422774_3 Regulator of chromosome condensation (RCC1) repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 330.0
SHD3_k127_422774_4 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003409 291.0
SHD3_k127_422774_5 Pkd domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000951 280.0
SHD3_k127_422774_6 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000001194 239.0
SHD3_k127_422774_7 regulation of DNA-templated transcription, elongation - - - 0.000000000000000000000000000000000000000000000001428 190.0
SHD3_k127_422774_8 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000000000000000001109 173.0
SHD3_k127_422774_9 serine-type endopeptidase activity K01346 - 3.4.21.71 0.000000000000000000000000000000000000000003682 173.0
SHD3_k127_423139_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 316.0
SHD3_k127_423139_1 - - - - 0.00000000000000000006497 101.0
SHD3_k127_423139_2 Ribosome-binding factor A - - - 0.000005522 55.0
SHD3_k127_4233183_0 Trehalase K01194 - 3.2.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 587.0
SHD3_k127_4233183_1 pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002899 310.0
SHD3_k127_4233183_2 lactate/malate dehydrogenase, NAD binding domain K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 298.0
SHD3_k127_4233183_3 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001826 259.0
SHD3_k127_4233183_4 Aldose 1-epimerase K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000002231 235.0
SHD3_k127_4233183_6 Belongs to the glycosyl hydrolase 12 (cellulase H) family K01179 - 3.2.1.4 0.000000000000000000001696 106.0
SHD3_k127_4233183_7 peptidase inhibitor activity - - - 0.000000000000009091 87.0
SHD3_k127_4233183_8 belongs to the sigma-70 factor family, ECF subfamily K03088 - - 0.00000000000006766 78.0
SHD3_k127_4233183_9 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 GO:0000287,GO:0003674,GO:0003824,GO:0003977,GO:0005488,GO:0008080,GO:0008150,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0019134,GO:0022610,GO:0030260,GO:0035635,GO:0040007,GO:0043167,GO:0043169,GO:0044403,GO:0044406,GO:0044409,GO:0044419,GO:0044650,GO:0046872,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0070569 2.3.1.157,2.7.7.23 0.000001183 52.0
SHD3_k127_4254553_0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002147 273.0
SHD3_k127_4254553_1 PKD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000009899 249.0
SHD3_k127_4254553_2 candidate b-glycosidase, glycoside hydrolase family 8 protein - - - 0.000000000000000000000000000000000000001794 169.0
SHD3_k127_4254553_3 cellulose binding - - - 0.000000000000000000000000000000002738 145.0
SHD3_k127_4254553_4 Suppressor of fused protein (SUFU) - - - 0.0000000000000000000000000000004577 137.0
SHD3_k127_4254553_5 - - - - 0.0000002629 64.0
SHD3_k127_4254553_6 Tetratricopeptide repeat - - - 0.0001045 55.0
SHD3_k127_4256120_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000005824 231.0
SHD3_k127_4256120_1 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000007911 141.0
SHD3_k127_4256120_2 Fe-S-cluster oxidoreductase - - - 0.0000006466 55.0
SHD3_k127_4257645_0 Uncharacterised ACR (DUF711) K09157 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000427 407.0
SHD3_k127_4257645_1 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000001648 188.0
SHD3_k127_4257645_2 ACT domain K03567 - - 0.000000000000000000000000000001264 133.0
SHD3_k127_4257645_3 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.0000000000000000000000007341 114.0
SHD3_k127_4257645_4 Platelet-activating factor acetylhydrolase, isoform II - - - 0.00000000000000000008029 105.0
SHD3_k127_4257645_6 Alpha/beta hydrolase family - - - 0.000000007597 69.0
SHD3_k127_4270738_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 2.08e-209 663.0
SHD3_k127_4270738_1 Lysin motif K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 326.0
SHD3_k127_4270738_2 - - - - 0.000000000000000000000000000000000000000000000000000000004087 218.0
SHD3_k127_4270738_3 Tellurite resistance protein TehB - - - 0.00000000000000000000000000000000000002591 153.0
SHD3_k127_4270738_4 Radical SAM K06871 - - 0.00000000000000000000000000005686 128.0
SHD3_k127_4270738_5 Transcriptional regulator - - - 0.000000004404 60.0
SHD3_k127_4285580_0 Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose K16212 - 2.4.1.281 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 571.0
SHD3_k127_4285580_1 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000008167 207.0
SHD3_k127_4285580_10 Protein tyrosine kinase K12132 - 2.7.11.1 0.00001502 56.0
SHD3_k127_4285580_2 phosphatase - - - 0.0000000000000000000000000000000000000000000001308 187.0
SHD3_k127_4285580_3 Belongs to the NiFe NiFeSe hydrogenase large subunit family K00436 - 1.12.1.2 0.000000000000000000000000000000002061 130.0
SHD3_k127_4285580_4 hydrogenase maturation protease - - - 0.0000000000000000000000000001316 123.0
SHD3_k127_4285580_5 cheY-homologous receiver domain - - - 0.00000000000000000000000001671 119.0
SHD3_k127_4285580_6 - - - - 0.0000000000000000000000007668 117.0
SHD3_k127_4285580_7 cheY-homologous receiver domain - - - 0.000000000000000000313 97.0
SHD3_k127_4285580_9 GGDEF domain K02282,K03407 - 2.7.13.3 0.0000000000004723 74.0
SHD3_k127_429773_0 - - - - 0.000000000000000000000000000000000000000000000000000005447 207.0
SHD3_k127_429773_1 nuclease activity K18828 - - 0.000000000000000000000000000000000000000006036 158.0
SHD3_k127_429773_2 EAL domain - - - 0.00000000000000000000000000002991 123.0
SHD3_k127_429773_3 Ribbon-helix-helix protein, copG family - - - 0.00000000003316 67.0
SHD3_k127_429773_4 PFAM Cupin 2, conserved barrel domain protein - - - 0.0008767 48.0
SHD3_k127_430055_0 Beta propeller domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 504.0
SHD3_k127_430055_1 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007588 495.0
SHD3_k127_430055_2 3-demethylubiquinone-9 3-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 301.0
SHD3_k127_430055_3 formate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001988 258.0
SHD3_k127_430055_4 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.000000000000000000000000000000000000000000000000000000000005004 226.0
SHD3_k127_430055_5 PIN domain - - - 0.00000000000000000000000000000000000000000000000005363 185.0
SHD3_k127_430055_6 Protein of unknown function DUF86 - - - 0.0000000000000001197 87.0
SHD3_k127_430055_7 DNA polymerase beta domain protein region - - - 0.00000000000004233 79.0
SHD3_k127_430055_8 - - GO:0008150,GO:0040008,GO:0045927,GO:0048518,GO:0050789,GO:0065007 - 0.00000000002599 66.0
SHD3_k127_430055_9 - - - - 0.00000003094 61.0
SHD3_k127_4304889_0 penicillin-binding protein K03587 - 3.4.16.4 3.178e-246 786.0
SHD3_k127_4304889_1 Belongs to the MurCDEF family K01924 - 6.3.2.8 7.673e-216 683.0
SHD3_k127_4304889_10 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003664 368.0
SHD3_k127_4304889_11 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 342.0
SHD3_k127_4304889_12 PFAM phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003189 340.0
SHD3_k127_4304889_13 protein kinase activity K08884 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 307.0
SHD3_k127_4304889_14 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006211 279.0
SHD3_k127_4304889_15 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007137 279.0
SHD3_k127_4304889_17 Belongs to the MraZ family K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000876 196.0
SHD3_k127_4304889_18 Predicted membrane protein (DUF2254) - - - 0.0000000000000000000000000000000000000000000000000001536 205.0
SHD3_k127_4304889_19 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000004971 199.0
SHD3_k127_4304889_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 9.449e-201 633.0
SHD3_k127_4304889_20 - - - - 0.000000000000000000000000000000000000000000000002704 191.0
SHD3_k127_4304889_21 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000001503 168.0
SHD3_k127_4304889_22 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458,K21789 - 2.3.1.179 0.000000000000000000000000003406 127.0
SHD3_k127_4304889_25 PFAM diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.00000000000000000000013 102.0
SHD3_k127_4304889_26 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K01921,K03589,K06438 GO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019954,GO:0022402,GO:0022414,GO:0022607,GO:0031224,GO:0031226,GO:0032153,GO:0032505,GO:0032506,GO:0040007,GO:0042802,GO:0043093,GO:0044085,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0090529,GO:1902410,GO:1903047 6.3.2.4 0.0000000000000001922 93.0
SHD3_k127_4304889_27 radical SAM domain protein - - - 0.0000000000001239 83.0
SHD3_k127_4304889_29 Phosphopantetheine attachment site K02078 - - 0.00000005116 59.0
SHD3_k127_4304889_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 539.0
SHD3_k127_4304889_30 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.000003657 55.0
SHD3_k127_4304889_31 peptidase activity, acting on L-amino acid peptides - - - 0.00005664 49.0
SHD3_k127_4304889_4 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 522.0
SHD3_k127_4304889_5 Belongs to the SEDS family K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 478.0
SHD3_k127_4304889_6 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008765,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 489.0
SHD3_k127_4304889_7 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 460.0
SHD3_k127_4304889_8 Surface antigen K07277,K07278 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004551 398.0
SHD3_k127_4304889_9 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104 386.0
SHD3_k127_4306912_0 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002792 522.0
SHD3_k127_4306912_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 409.0
SHD3_k127_4306912_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000055 240.0
SHD3_k127_4306912_3 Acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000007388 139.0
SHD3_k127_4306912_4 - - - - 0.0000004954 61.0
SHD3_k127_432171_0 Papain family cysteine protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000004045 265.0
SHD3_k127_432171_1 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin - - - 0.00000000000000000000000000000003527 142.0
SHD3_k127_432171_2 - - - - 0.000000000000004011 85.0
SHD3_k127_432171_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000002131 60.0
SHD3_k127_432171_4 WD-40 repeat - - - 0.0003531 54.0
SHD3_k127_432679_0 Protein containing a von Willebrand factor type A domain - - - 0.0 1274.0
SHD3_k127_432679_1 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 470.0
SHD3_k127_432679_2 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805 360.0
SHD3_k127_432679_3 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 312.0
SHD3_k127_432679_4 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000008651 123.0
SHD3_k127_432679_6 Nucleic-acid-binding protein K07742 - - 0.00000000005178 70.0
SHD3_k127_4326995_0 Prokaryotic cytochrome b561 - - - 1.486e-204 658.0
SHD3_k127_4326995_1 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000000000000005931 204.0
SHD3_k127_4326995_2 TIGRFAM cytochrome C family protein - - - 0.00000000000000000000000000000000000000000000000000006751 201.0
SHD3_k127_4326995_3 histidine kinase dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000008727 164.0
SHD3_k127_4326995_4 - - - - 0.000000000000000000000000000000000000009211 156.0
SHD3_k127_4326995_5 cytochrome c - - - 0.0000000000000001631 94.0
SHD3_k127_4327431_0 ABC-type multidrug transport system ATPase component K21397 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002444 286.0
SHD3_k127_4327431_1 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000166 164.0
SHD3_k127_4327861_1 Amidohydrolase - - - 0.00000000000000001958 88.0
SHD3_k127_4327861_2 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.000001808 58.0
SHD3_k127_4327861_3 Parallel beta-helix repeats - - - 0.00001302 55.0
SHD3_k127_4335134_0 cellulose binding - - - 2.864e-195 634.0
SHD3_k127_4335134_1 Acetyl-CoA carboxylase, central region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 598.0
SHD3_k127_4335134_2 Sulfatase K01133 - 3.1.6.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 453.0
SHD3_k127_4335134_3 - - - - 0.000000000000000000000000000000000000000000000000000000002278 211.0
SHD3_k127_4335134_4 ABC transporter K06147,K18104 - 3.6.3.44 0.0000000000000000007234 94.0
SHD3_k127_4335134_5 tail collar domain protein - - - 0.000003299 58.0
SHD3_k127_4356552_0 pyrroloquinoline quinone binding K01206,K01218 - 3.2.1.51,3.2.1.78 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003287 540.0
SHD3_k127_4356552_1 FHA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 511.0
SHD3_k127_4356552_2 NADP Oxidoreductase K06988 - 1.5.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 362.0
SHD3_k127_4356552_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000458 312.0
SHD3_k127_4356552_4 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000000000000001999 191.0
SHD3_k127_4356552_5 Cell wall-active antibiotics response 4TMS YvqF - - - 0.0000000000000000000000000000000000000001336 158.0
SHD3_k127_4356552_7 Tellurite resistance protein TerB K05801 - - 0.0000005689 59.0
SHD3_k127_4363946_0 Tetratricopeptide repeat - - - 0.0 1455.0
SHD3_k127_4363946_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1132.0
SHD3_k127_4363946_10 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 335.0
SHD3_k127_4363946_11 LD-carboxypeptidase K01297 - 3.4.17.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000824 293.0
SHD3_k127_4363946_12 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000992 249.0
SHD3_k127_4363946_13 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000002146 216.0
SHD3_k127_4363946_14 - - - - 0.00000000000000000000000000000000000000000005994 169.0
SHD3_k127_4363946_15 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000000003056 155.0
SHD3_k127_4363946_16 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000000000001206 149.0
SHD3_k127_4363946_18 Secretory protein of YscJ/FliF family K03222 - - 0.00000000000000000000000009141 124.0
SHD3_k127_4363946_19 rRNA binding K00334 - 1.6.5.3 0.000007704 57.0
SHD3_k127_4363946_2 ABC-type multidrug transport system ATPase and permease K06147 - - 9.383e-209 666.0
SHD3_k127_4363946_3 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009865 539.0
SHD3_k127_4363946_4 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 547.0
SHD3_k127_4363946_5 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 537.0
SHD3_k127_4363946_6 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 473.0
SHD3_k127_4363946_7 Acyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007744 342.0
SHD3_k127_4363946_8 GDP-mannose 4,6 dehydratase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 356.0
SHD3_k127_4363946_9 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 327.0
SHD3_k127_436974_0 Belongs to the glycosyl hydrolase 43 family - - - 3.585e-200 635.0
SHD3_k127_436974_1 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000002949 256.0
SHD3_k127_436974_2 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000000000000000000000003096 197.0
SHD3_k127_436974_4 - - - - 0.000006254 59.0
SHD3_k127_437008_0 Arginosuccinate synthase K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000419 439.0
SHD3_k127_437008_1 argininosuccinate lyase K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004189 443.0
SHD3_k127_437008_2 SERine Proteinase INhibitors K13963 - - 0.0000000000000000000000000000000000000000000000000000001421 207.0
SHD3_k127_4383790_0 Transposase IS66 family K07484 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 461.0
SHD3_k127_4383790_1 IS66 Orf2 family protein K07484 - - 0.00000000000000000002734 94.0
SHD3_k127_4383790_2 IMG reference gene - - - 0.00004129 50.0
SHD3_k127_4384581_0 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 366.0
SHD3_k127_4384581_1 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000003242 193.0
SHD3_k127_4384581_2 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 GO:0008150,GO:0040007 3.5.4.19,3.6.1.31 0.0000000000000000000000000000000000000000000001286 177.0
SHD3_k127_4384581_3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog)) K04762,K06179,K06180 GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009451,GO:0009628,GO:0009987,GO:0016070,GO:0033554,GO:0034605,GO:0034641,GO:0043021,GO:0043023,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 5.4.99.23,5.4.99.24 0.00000000000000000000002617 104.0
SHD3_k127_4384581_4 Transcriptional regulatory protein, C terminal K07666 - - 0.00001363 56.0
SHD3_k127_4389805_0 oligosaccharyl transferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 596.0
SHD3_k127_4389805_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 472.0
SHD3_k127_4389805_3 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008029 407.0
SHD3_k127_4389805_4 Belongs to the bacterial histone-like protein family K05788 - - 0.00000000000000000000000000000000000000000000000000003692 190.0
SHD3_k127_4389805_5 Gaf domain - - - 0.0000000000000000000000000000006166 132.0
SHD3_k127_439509_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1403.0
SHD3_k127_439509_1 GXGXG motif - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 458.0
SHD3_k127_439509_2 heterodisulfide reductase K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001094 287.0
SHD3_k127_439509_3 Methylene-tetrahydrofolate reductase C terminal - - - 0.0000000000000000000000000000000000000000000000000004315 189.0
SHD3_k127_439509_4 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000000000000000000000000000000005174 175.0
SHD3_k127_439509_5 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000003328 148.0
SHD3_k127_4395744_0 RNase_H superfamily K07502 - - 0.000000000000000000000000000000000000000000000000000000000000001684 230.0
SHD3_k127_4395744_1 Glyoxalase-like domain - - - 0.00000000000000000000000000000000000000003222 156.0
SHD3_k127_4395744_2 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) K03594 - 1.16.3.1 0.000000007812 67.0
SHD3_k127_4395744_3 PKD domain - - - 0.00000008123 64.0
SHD3_k127_4395744_4 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000006093 48.0
SHD3_k127_4395744_5 Histidine kinase - - - 0.00008344 54.0
SHD3_k127_4395744_6 Calcium ion binding - GO:0002009,GO:0002165,GO:0003674,GO:0005198,GO:0005201,GO:0005575,GO:0005576,GO:0007275,GO:0007424,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007552,GO:0007560,GO:0007591,GO:0008150,GO:0008362,GO:0008587,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0022404,GO:0031012,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040003,GO:0040005,GO:0042303,GO:0042335,GO:0044421,GO:0044719,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0060429,GO:0060541,GO:0060562,GO:0065007,GO:0065008,GO:0090066 - 0.0001312 54.0
SHD3_k127_4401574_0 DUF3160 - - - 9.789e-245 779.0
SHD3_k127_4401574_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel K20628 - - 0.000000000000000000000000000000000000000000000000002204 197.0
SHD3_k127_4406095_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 2.52e-250 783.0
SHD3_k127_4406095_1 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000006171 117.0
SHD3_k127_4406095_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0001208 53.0
SHD3_k127_4406095_3 Belongs to the ompA family K03286 - - 0.0003097 51.0
SHD3_k127_4407647_0 PFAM Aldehyde dehydrogenase - - - 4.78e-196 625.0
SHD3_k127_4407647_1 Glycosyl hydrolases family 16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001187 268.0
SHD3_k127_4407647_2 Cellulose Binding Domain Type IV - - - 0.00000000000000000000000000000000000000000000000000000000000000006875 241.0
SHD3_k127_4407647_3 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.000000000000000000000000000000000000000000000003621 179.0
SHD3_k127_4412803_0 Belongs to the glycosyl hydrolase 30 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009275 393.0
SHD3_k127_4412803_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004726 399.0
SHD3_k127_4412803_2 Alpha-tubulin suppressor and related RCC1 domain-containing proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000658 229.0
SHD3_k127_4412803_3 Sigma-70 region 2 K03088 - - 0.00000000001417 72.0
SHD3_k127_4412803_4 Fe2 -dicitrate sensor, membrane component K07165 - - 0.0000006961 61.0
SHD3_k127_4416118_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 2.538e-198 625.0
SHD3_k127_4416118_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007209 320.0
SHD3_k127_4416118_2 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004582 276.0
SHD3_k127_4416118_3 Parallel beta-helix repeats - - - 0.00002955 56.0
SHD3_k127_4416118_4 - - - - 0.0001579 50.0
SHD3_k127_4416118_5 Poly(3-hydroxybutyrate) depolymerase - - - 0.000181 55.0
SHD3_k127_4416118_7 Endonuclease Exonuclease Phosphatase - - - 0.0004139 54.0
SHD3_k127_4429431_0 Fibronectin type III-like domain K05349 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005168 426.0
SHD3_k127_4429431_1 Glycoside hydrolase family 44 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003254 278.0
SHD3_k127_4437506_0 Aldo/keto reductase family K07079 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 330.0
SHD3_k127_4437506_1 helix_turn_helix, arabinose operon control protein K21826 - - 0.00000000000000000000000000000000000000000387 168.0
SHD3_k127_4437506_2 Thioredoxin - - - 0.000000000000000000000000000000000001183 150.0
SHD3_k127_4437506_4 Lysylphosphatidylglycerol synthase TM region - - - 0.00000000000000000000000001591 121.0
SHD3_k127_4475780_0 hydrolase family 65, central catalytic K01194,K01838,K04844,K05342 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0016787,GO:0030312,GO:0044464,GO:0071944 2.4.1.64,3.2.1.28,5.4.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004125 381.0
SHD3_k127_4475780_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003208 394.0
SHD3_k127_4475780_2 Glycosyl hydrolases family 16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004828 314.0
SHD3_k127_4475780_3 AMP binding - - - 0.0000000000000000000000000000000000000004666 160.0
SHD3_k127_4475780_4 Aldo/keto reductase family - - - 0.00000000000000000000000000004942 117.0
SHD3_k127_4475780_5 Aldo/keto reductase family - - - 0.00000000522 61.0
SHD3_k127_4476524_0 Belongs to the FtsK SpoIIIE SftA family K03466 - - 6.713e-253 806.0
SHD3_k127_4476524_1 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005055 484.0
SHD3_k127_4476524_2 deoxyhypusine monooxygenase activity K01256,K02563,K08776,K12132 - 2.4.1.227,2.7.11.1,3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000427 435.0
SHD3_k127_4476524_3 Peptidase family M50 K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005406 351.0
SHD3_k127_4476524_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000111 277.0
SHD3_k127_4476524_6 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000001247 130.0
SHD3_k127_4476524_7 histone H2A K63-linked ubiquitination - - - 0.000000000000000000006486 95.0
SHD3_k127_4480791_0 FAD binding domain K07137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003153 442.0
SHD3_k127_4480791_1 Di-haem cytochrome c peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004913 432.0
SHD3_k127_4480791_2 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003296 404.0
SHD3_k127_4480791_3 Belongs to the beta-ketoacyl-ACP synthases family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005756 295.0
SHD3_k127_4480791_4 Leucine-rich repeat (LRR) protein - - - 0.00000000000000000000000000000000000000000000000000002604 198.0
SHD3_k127_4480791_5 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000001509 140.0
SHD3_k127_4480791_6 Dehydrogenase E1 component K11381 - 1.2.4.4 0.00000000000000000000000000000000002068 139.0
SHD3_k127_4480791_7 PhoU domain - - - 0.00000001188 64.0
SHD3_k127_4489870_0 TIGRFAM YD repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005363 360.0
SHD3_k127_4489870_1 PFAM glycoside hydrolase family 5 K01179 - 3.2.1.4 0.00000000000000000000000000002168 136.0
SHD3_k127_4490153_0 Tetratricopeptide repeat - - - 0.0 1106.0
SHD3_k127_4490153_1 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007362 332.0
SHD3_k127_4490153_2 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 312.0
SHD3_k127_4490153_3 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 314.0
SHD3_k127_4490153_5 FecR protein - - - 0.00000004017 65.0
SHD3_k127_4490153_6 Lysylphosphatidylglycerol synthase TM region K07027,K20468 - - 0.00004652 55.0
SHD3_k127_4491065_0 Required for chromosome condensation and partitioning K03529 - - 0.0 1142.0
SHD3_k127_4491065_1 endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000000000000000000000002611 240.0
SHD3_k127_4491065_2 protein conserved in bacteria - - - 0.000000000000000001403 89.0
SHD3_k127_4491983_0 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000004077 227.0
SHD3_k127_4491983_1 TonB-dependent Receptor Plug Domain K02014 - - 0.0000000000000000000000000000000237 138.0
SHD3_k127_4491983_2 phosphatidate phosphatase activity K19302 - 3.6.1.27 0.000000000000000000000000000001035 135.0
SHD3_k127_4491983_3 Esterase PHB depolymerase - - - 0.000000000000000000000000000001104 126.0
SHD3_k127_4491983_4 PFAM PEGA domain - - - 0.0000000000000001011 94.0
SHD3_k127_4508812_0 helicase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 633.0
SHD3_k127_4508812_1 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 327.0
SHD3_k127_4508812_2 MotA/TolQ/ExbB proton channel family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006385 322.0
SHD3_k127_4508812_3 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000000000000000000000000000000000000000000000006618 239.0
SHD3_k127_4508812_4 Biopolymer transport protein ExbD/TolR - - - 0.00000000000000000000000000000000000000000000000000000002664 201.0
SHD3_k127_4508812_5 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000000000000000000000000000000000153 199.0
SHD3_k127_4508812_6 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000002497 210.0
SHD3_k127_4508812_7 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000009198 112.0
SHD3_k127_4514122_0 response regulator K07714 - - 2.994e-230 726.0
SHD3_k127_4514122_1 Protein of unknown function (DUF1343) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 404.0
SHD3_k127_4514122_2 PFAM Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 391.0
SHD3_k127_4514122_3 Lipopolysaccharide kinase (Kdo/WaaP) family K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000541 330.0
SHD3_k127_4514122_4 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000242 169.0
SHD3_k127_4514122_5 ATP-grasp domain K01921 - 6.3.2.4 0.00000000000001888 76.0
SHD3_k127_4517650_0 O-Glycosyl hydrolase family 30 K18579 - 3.2.1.164 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 582.0
SHD3_k127_4517650_1 Pectate lyase K01728,K21606 - 3.2.1.202,4.2.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009052 520.0
SHD3_k127_4517650_2 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003738 441.0
SHD3_k127_4517650_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001884 434.0
SHD3_k127_4517650_4 Low affinity immunoglobulin epsilon Fc K06468 GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0002920,GO:0002922,GO:0002923,GO:0002925,GO:0003674,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009897,GO:0009986,GO:0009987,GO:0010033,GO:0010556,GO:0010557,GO:0010604,GO:0016020,GO:0016021,GO:0019221,GO:0019222,GO:0023052,GO:0031224,GO:0031226,GO:0031341,GO:0031343,GO:0032768,GO:0032770,GO:0034097,GO:0042221,GO:0043085,GO:0043900,GO:0043902,GO:0044093,GO:0044425,GO:0044459,GO:0044464,GO:0044877,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050839,GO:0050896,GO:0050999,GO:0051000,GO:0051341,GO:0051353,GO:0051709,GO:0051712,GO:0051716,GO:0051769,GO:0051770,GO:0060255,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071944,GO:0098552 - 0.0000000000000007998 85.0
SHD3_k127_4517650_5 xylan catabolic process K03932 - - 0.0002626 45.0
SHD3_k127_451930_0 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 9.052e-253 815.0
SHD3_k127_451930_1 Leucine carboxyl methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008081 331.0
SHD3_k127_451930_2 xylan catabolic process K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 306.0
SHD3_k127_4519378_0 PFAM H transporting two-sector ATPase alpha beta subunit central region K02412,K03224 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004227 480.0
SHD3_k127_4519378_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 407.0
SHD3_k127_4519378_3 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 351.0
SHD3_k127_4519378_4 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000279 199.0
SHD3_k127_4519378_6 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.0000000000007957 69.0
SHD3_k127_4519378_7 Lysin motif - - - 0.000008028 59.0
SHD3_k127_4526036_0 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 524.0
SHD3_k127_4526036_1 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 364.0
SHD3_k127_4526036_2 Belongs to the BI1 family K06890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493 308.0
SHD3_k127_4526036_3 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000003362 89.0
SHD3_k127_4526547_0 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007053 505.0
SHD3_k127_4526547_1 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001948 273.0
SHD3_k127_4526547_2 Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004853 254.0
SHD3_k127_4528163_0 Transglycosylase SLT domain K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 451.0
SHD3_k127_4528163_1 Choline/ethanolamine kinase K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 361.0
SHD3_k127_4528163_2 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000001165 220.0
SHD3_k127_4528163_3 rRNA methyltransferase activity K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.000000000000000000000000000000000000000000001106 175.0
SHD3_k127_4528163_5 - - - - 0.0000000000000000001837 100.0
SHD3_k127_4528163_6 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K04040,K20616 - 2.5.1.133,2.5.1.62 0.00000001096 68.0
SHD3_k127_4529051_0 DbpA RNA binding domain K03732,K05592 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008157 601.0
SHD3_k127_4529051_1 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007661 450.0
SHD3_k127_4529051_10 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.000000000000000000000000000000000000000000000004758 178.0
SHD3_k127_4529051_13 Protease prsW family - - - 0.0000000000000000000000000001965 128.0
SHD3_k127_4529051_15 protein secretion K03116,K03117 GO:0003674,GO:0005215 - 0.00000000000000001636 88.0
SHD3_k127_4529051_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 397.0
SHD3_k127_4529051_3 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 380.0
SHD3_k127_4529051_4 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003562 336.0
SHD3_k127_4529051_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 294.0
SHD3_k127_4529051_6 Cytochrome C assembly protein K02195 - - 0.00000000000000000000000000000000000000000000000000000000000000000000113 245.0
SHD3_k127_4529051_8 Belongs to the FPP GGPP synthase family K00805,K02523 - 2.5.1.30,2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000001715 230.0
SHD3_k127_4529051_9 Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - 0.0000000000000000000000000000000000000000000000000000000000002977 221.0
SHD3_k127_4538305_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 4.74e-238 772.0
SHD3_k127_4538305_1 TonB-dependent Receptor Plug Domain - - - 4.921e-196 636.0
SHD3_k127_4538305_2 PFAM peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.00000000000000000000000000000000000000000000000000000000001172 235.0
SHD3_k127_4538305_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000000000000000000000000000000000000000000000000001641 219.0
SHD3_k127_4538305_4 efflux transmembrane transporter activity K15725 - - 0.00000000000000000000000000000000000000000035 177.0
SHD3_k127_4538305_5 AcrB/AcrD/AcrF family K07787,K15726 - - 0.000000000000000000000000007592 111.0
SHD3_k127_4538305_6 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000000003357 113.0
SHD3_k127_4538305_7 amine dehydrogenase activity - - - 0.000000000002277 80.0
SHD3_k127_4549112_0 diguanylate cyclase activity K02103,K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002406 302.0
SHD3_k127_4549112_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.00000000000000000000000000000000000000005293 159.0
SHD3_k127_4549112_2 Histidine kinase - - - 0.0000000000000000000000000000000000000002198 167.0
SHD3_k127_4549112_3 Ferredoxin-NADP reductase K00528 - 1.18.1.2,1.19.1.1 0.000000007668 58.0
SHD3_k127_4557905_0 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 500.0
SHD3_k127_4557905_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 385.0
SHD3_k127_4557905_2 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 353.0
SHD3_k127_4557905_3 RNA polymerase sigma factor K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001811 278.0
SHD3_k127_4557905_4 - - - - 0.0000000000000000000000000000000000000000000000000000000006428 218.0
SHD3_k127_4557905_5 protein trimerization - - - 0.000000000000000000001513 109.0
SHD3_k127_4557905_6 rRNA binding K02968 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030234,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0042979,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0065003,GO:0065007,GO:0065009,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000002683 67.0
SHD3_k127_4557905_9 Evidence 5 No homology to any previously reported sequences - - - 0.00000193 60.0
SHD3_k127_4557965_0 Periplasmic protein TonB links inner and outer membranes - - - 1.447e-235 756.0
SHD3_k127_4557965_1 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007095 546.0
SHD3_k127_4557965_11 - - - - 0.0000000000000000000000000000000000000000000001421 193.0
SHD3_k127_4557965_12 Biopolymer transport protein ExbD/TolR K03559 - - 0.00000000000000000000000000000000000000000001053 166.0
SHD3_k127_4557965_13 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000002579 157.0
SHD3_k127_4557965_14 Response regulator receiver - - - 0.00000000000000000000000000000000001654 153.0
SHD3_k127_4557965_16 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000841 116.0
SHD3_k127_4557965_17 Gram-negative bacterial TonB protein C-terminal - - - 0.0000000000000000000099 102.0
SHD3_k127_4557965_18 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000000000000000002045 97.0
SHD3_k127_4557965_2 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004764 511.0
SHD3_k127_4557965_21 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000001934 63.0
SHD3_k127_4557965_22 - - - - 0.00000002224 65.0
SHD3_k127_4557965_23 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.0000004006 56.0
SHD3_k127_4557965_24 - - - - 0.00005279 54.0
SHD3_k127_4557965_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000915 430.0
SHD3_k127_4557965_4 Protein kinase domain K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 353.0
SHD3_k127_4557965_5 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 326.0
SHD3_k127_4557965_6 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000001085 269.0
SHD3_k127_4557965_7 palmitoyl-(protein) hydrolase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001037 254.0
SHD3_k127_4557965_8 PEGA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002272 251.0
SHD3_k127_4557965_9 Protein of unknown function DUF116 - - - 0.000000000000000000000000000000000000000000000000000005296 210.0
SHD3_k127_4561535_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002935 462.0
SHD3_k127_4561535_1 Evidence 2b Function of strongly homologous gene - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003427 422.0
SHD3_k127_4561535_2 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 328.0
SHD3_k127_4561535_3 PFAM IstB-like ATP binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008775 263.0
SHD3_k127_4561535_4 - - - - 0.0000000000000000000000000000000000001286 155.0
SHD3_k127_4561535_5 Immunity protein 63 - - - 0.00000000000000004445 83.0
SHD3_k127_4561535_6 4Fe-4S single cluster domain K05337 - - 0.00006979 53.0
SHD3_k127_4570057_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 2.38e-271 861.0
SHD3_k127_4570057_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 4.625e-224 734.0
SHD3_k127_4570057_2 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005765 592.0
SHD3_k127_4570057_3 Domain of unknown function (DUF4388) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 396.0
SHD3_k127_4570057_4 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 325.0
SHD3_k127_4570057_5 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( K02823 - - 0.00000000000000000000000000000000000000000000001528 186.0
SHD3_k127_4570057_6 ATP-binding region ATPase domain protein K03407 - 2.7.13.3 0.00000000000000000000000000000000000000000003915 184.0
SHD3_k127_4570057_7 FR47-like protein K03789 - 2.3.1.128 0.000000000000000003736 97.0
SHD3_k127_4570057_8 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.0000000002296 68.0
SHD3_k127_4570057_9 Cache domain K03406 - - 0.0004474 52.0
SHD3_k127_4572960_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1567.0
SHD3_k127_4572960_1 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 444.0
SHD3_k127_4572960_2 PFAM Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005233 284.0
SHD3_k127_4572960_3 binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000007414 248.0
SHD3_k127_4572960_4 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000003564 180.0
SHD3_k127_4582633_0 Glycosyl hydrolase family 14 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003102 271.0
SHD3_k127_4588332_0 Aminotransferase class-V K04487 - 2.8.1.7 0.0 1493.0
SHD3_k127_4588332_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 5.361e-253 827.0
SHD3_k127_4588332_10 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. - - - 0.00000000000000000000000000000000000000007193 161.0
SHD3_k127_4588332_12 PilZ domain - - - 0.000000000000000000000832 98.0
SHD3_k127_4588332_14 Phosphate-induced protein 1 conserved region - GO:0005575,GO:0005618,GO:0005623,GO:0005911,GO:0008150,GO:0009505,GO:0009506,GO:0009628,GO:0030054,GO:0030312,GO:0044464,GO:0050896,GO:0055044,GO:0071944,GO:0080167 - 0.00001874 57.0
SHD3_k127_4588332_2 PFAM glycoside hydrolase family 3 K05349 - 3.2.1.21 1.082e-234 749.0
SHD3_k127_4588332_3 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002632 527.0
SHD3_k127_4588332_4 Protein kinase domain K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 330.0
SHD3_k127_4588332_6 Pectinacetylesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 299.0
SHD3_k127_4588332_7 HAMP domain - - - 0.000000000000000000000000000000000000000000000000000000002033 209.0
SHD3_k127_4588332_9 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000008609 176.0
SHD3_k127_459688_1 PA14 domain - - - 0.0000000000000000000000000000000000000000000000000000000429 211.0
SHD3_k127_459688_2 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000007051 158.0
SHD3_k127_459688_5 cell envelope organization K05807,K08309 - - 0.000000000005895 76.0
SHD3_k127_459688_6 Thioredoxin - - - 0.00000002359 59.0
SHD3_k127_4599558_0 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008458 457.0
SHD3_k127_4599558_1 Thermolysin metallopeptidase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 363.0
SHD3_k127_4599558_2 An automated process has identified a potential problem with this gene model - - - 0.0000000000000000000000000000000000000000000000002286 183.0
SHD3_k127_4599558_3 - - - - 0.00000000000000000000000000000000000000000000005592 177.0
SHD3_k127_4599558_4 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000000000000000001881 153.0
SHD3_k127_4599558_5 CotH kinase protein - - - 0.0000000000000000000005968 109.0
SHD3_k127_4599558_6 molecular chaperone - - - 0.000003151 58.0
SHD3_k127_4602727_0 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 398.0
SHD3_k127_4602727_1 Belongs to the peptidase S1B family - - - 0.00000000000000000000000000000000000000000000000000000001058 227.0
SHD3_k127_4602727_2 Stigma-specific protein, Stig1 - - - 0.00000001312 58.0
SHD3_k127_4611818_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009614 593.0
SHD3_k127_4611818_1 Endonuclease Exonuclease Phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 458.0
SHD3_k127_4611818_10 Polymer-forming cytoskeletal - - - 0.000000000000000000000000001557 119.0
SHD3_k127_4611818_11 Polymer-forming cytoskeletal - - - 0.000000002643 63.0
SHD3_k127_4611818_13 DNA-templated transcription, initiation K03088 - - 0.0000001918 55.0
SHD3_k127_4611818_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000436 250.0
SHD3_k127_4611818_4 SpoU rRNA Methylase family K00556 - 2.1.1.34 0.000000000000000000000000000000000000000000000000000000000000000105 231.0
SHD3_k127_4611818_5 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000007652 203.0
SHD3_k127_4611818_6 Calcineurin-like phosphoesterase K07098 - - 0.000000000000000000000000000000000000000000000004735 188.0
SHD3_k127_4611818_7 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000003977 135.0
SHD3_k127_4611818_8 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000001566 126.0
SHD3_k127_4611818_9 cellulose-binding family II K19668 - 3.2.1.91 0.00000000000000000000000000001268 139.0
SHD3_k127_4630346_0 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002846 345.0
SHD3_k127_4630346_1 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 298.0
SHD3_k127_4630346_2 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000001486 263.0
SHD3_k127_4630346_4 Rare lipoprotein A (RlpA)-like double-psi beta-barrel K20628 - - 0.000000000000000000000001462 114.0
SHD3_k127_4630346_5 Nacht domain - - - 0.000000000000000000000003576 121.0
SHD3_k127_4630346_6 Calcineurin-like phosphoesterase - - - 0.00000000000000001307 100.0
SHD3_k127_4630346_9 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0001398 49.0
SHD3_k127_463136_0 DNA-3-methyladenine glycosylase K01246 - 3.2.2.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001657 278.0
SHD3_k127_463136_1 iron ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000004608 237.0
SHD3_k127_463136_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000005759 179.0
SHD3_k127_463136_4 domain, Protein - - - 0.00000000000007929 75.0
SHD3_k127_463136_5 Belongs to the UPF0307 family K09889 - - 0.0003224 51.0
SHD3_k127_4633515_0 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 374.0
SHD3_k127_4633515_1 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000003983 203.0
SHD3_k127_4633515_2 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000001486 193.0
SHD3_k127_4633515_3 converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000003423 189.0
SHD3_k127_4633515_4 Formyl transferase - - - 0.0000000000000000000000000000001082 128.0
SHD3_k127_4633515_5 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000003631 134.0
SHD3_k127_4639515_0 Tex-like protein N-terminal domain K06959 - - 1.251e-250 794.0
SHD3_k127_4639515_1 Protein of unknown function (DUF3443) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003096 334.0
SHD3_k127_4639515_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 309.0
SHD3_k127_4639515_3 Zn-finger in ubiquitin-hydrolases and other protein - - - 0.000000000000000000000000000000000000002697 149.0
SHD3_k127_4639515_4 radical SAM domain protein K06139,K06871 - - 0.000000000000000000000000000000007135 143.0
SHD3_k127_4639515_5 Protein of unknown function (DUF2844) - - - 0.00000000000000000000000004447 113.0
SHD3_k127_4639515_6 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 0.00000000000000000000000004675 110.0
SHD3_k127_4639515_7 Kelch motif - - - 0.00002895 55.0
SHD3_k127_4639515_9 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.0001871 52.0
SHD3_k127_4650379_0 Radical SAM K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 478.0
SHD3_k127_4650379_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 313.0
SHD3_k127_4650379_2 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005156 285.0
SHD3_k127_4650379_3 arylsulfatase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000434 284.0
SHD3_k127_4650379_4 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.00000000000000000000000000000000000000000000007651 177.0
SHD3_k127_4652628_0 Transcriptional regulator, CarD family K07736 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 302.0
SHD3_k127_4652628_1 Ppx GppA K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002282 288.0
SHD3_k127_4652628_3 Flagellar Motor Protein K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007685 279.0
SHD3_k127_4652628_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001265 230.0
SHD3_k127_4652628_5 3-dehydroquinate dehydratase activity K03785,K13832 GO:0000166,GO:0003674,GO:0003824,GO:0003855,GO:0004764,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006725,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009712,GO:0009713,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018958,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0042537,GO:0042802,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046189,GO:0046278,GO:0046279,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617 1.1.1.25,4.2.1.10 0.00000000000000000000000000000000000000000000000003393 188.0
SHD3_k127_4652628_7 peptidyl-prolyl cis-trans isomerase activity K02597,K03769,K03771 - 5.2.1.8 0.00000000003788 67.0
SHD3_k127_4653153_0 FAD dependent oxidoreductase K09879 - - 0.00000000000000000000000000000000000000000000000004168 182.0
SHD3_k127_4653153_1 B12 binding domain K22491 - - 0.0000000000000000000000000000000000000008723 160.0
SHD3_k127_4653153_2 PFAM Pyridoxamine 5'-phosphate - - - 0.00000000000000000000000000000000004222 138.0
SHD3_k127_4653153_3 PFAM Rieske 2Fe-2S domain - - - 0.00000000000000000000000000000003444 139.0
SHD3_k127_4653153_4 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.00000000000000000000003386 108.0
SHD3_k127_46539_0 PFAM metal-dependent phosphohydrolase, HD sub domain K01120 - 3.1.4.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 341.0
SHD3_k127_46539_1 Protein phosphatase 2C - - - 0.00000000000000000000000000000000000005745 155.0
SHD3_k127_46539_2 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000005808 80.0
SHD3_k127_46539_3 histone H2A K63-linked ubiquitination - - - 0.000005121 49.0
SHD3_k127_4655699_0 Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 383.0
SHD3_k127_4655699_1 CAAX protease self-immunity - - - 0.0000000000000000000000000000000009758 140.0
SHD3_k127_4655699_2 Peptidase family S51 - - - 0.00000000000000000000000000000002118 142.0
SHD3_k127_4655699_3 Sodium/hydrogen exchanger family - - - 0.0000000000000002142 87.0
SHD3_k127_4655699_4 Creatinine amidohydrolase K01470 - 3.5.2.10 0.00000005359 57.0
SHD3_k127_4655699_5 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00006142 47.0
SHD3_k127_4671139_0 phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 327.0
SHD3_k127_4671139_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000004557 100.0
SHD3_k127_4678721_0 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 357.0
SHD3_k127_4678721_1 Domain of unknown function (DUF4423) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 338.0
SHD3_k127_4678721_2 Domain of unknown function (DUF3520) K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004946 346.0
SHD3_k127_4678721_3 PFAM Formylglycine-generating sulfatase enzyme K18912 - 1.14.99.50 0.0000000000000000000000000000000000000000003023 173.0
SHD3_k127_4678721_4 Beta propeller domain - - - 0.00000000000000000000000000000000003284 153.0
SHD3_k127_4685863_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.000000000000000000000000000000000001613 159.0
SHD3_k127_4685863_1 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000276 133.0
SHD3_k127_4685863_3 Pacifastin inhibitor (LCMII) - - - 0.000000000000000001981 96.0
SHD3_k127_4691745_0 COG0145 N-methylhydantoinase A acetone carboxylase, beta subunit K10855 - 6.4.1.6 1.23e-231 739.0
SHD3_k127_4691745_1 COG0146 N-methylhydantoinase B acetone carboxylase, alpha subunit - - - 1.432e-203 654.0
SHD3_k127_4691745_10 Beta-ketoacyl synthase, N-terminal domain - - - 0.00000000003931 76.0
SHD3_k127_4691745_2 COG0145 N-methylhydantoinase A acetone carboxylase, beta subunit K10855 - 6.4.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 368.0
SHD3_k127_4691745_3 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007366 270.0
SHD3_k127_4691745_4 Beta-ketoacyl synthase, C-terminal domain K00647 - 2.3.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000004028 263.0
SHD3_k127_4691745_5 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.00000000000000000000000000000000000000000000000000000000000019 222.0
SHD3_k127_4691745_6 Acetone carboxylase gamma subunit - - - 0.0000000000000000000000000000000000003605 149.0
SHD3_k127_4691745_7 amp-dependent synthetase and ligase - - - 0.0000000000000000000000000000000006571 151.0
SHD3_k127_4691745_8 Domain of unknown function (DUF4445) - - - 0.0000000000000000000000002679 115.0
SHD3_k127_4691745_9 Phosphopantetheine attachment site - - - 0.000000000001813 72.0
SHD3_k127_4694856_0 Serine Threonine protein kinase K12132 - 2.7.11.1 0.0 1512.0
SHD3_k127_4694856_1 MreB/Mbl protein - - - 2.626e-265 828.0
SHD3_k127_4694856_11 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 301.0
SHD3_k127_4694856_12 serine-type endopeptidase activity K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 296.0
SHD3_k127_4694856_13 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001195 270.0
SHD3_k127_4694856_14 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008513 261.0
SHD3_k127_4694856_15 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.0000000000000000000000000000000000000000000000000000007586 205.0
SHD3_k127_4694856_16 Fibronectin fibrinogen-binding protein - - - 0.00000000000000000000000000000000000000000000000001171 182.0
SHD3_k127_4694856_17 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000001193 180.0
SHD3_k127_4694856_19 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000008475 131.0
SHD3_k127_4694856_2 DNA helicase K03657 - 3.6.4.12 1.043e-242 775.0
SHD3_k127_4694856_22 chaperone-mediated protein folding - - - 0.00000000000001597 79.0
SHD3_k127_4694856_3 Domain of unknown function (DUF362) - - - 1.192e-242 756.0
SHD3_k127_4694856_4 Heat shock 70 kDa protein K04043 - - 2.757e-231 731.0
SHD3_k127_4694856_5 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005652 585.0
SHD3_k127_4694856_6 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 459.0
SHD3_k127_4694856_7 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623 411.0
SHD3_k127_4694856_8 Protein serine threonine phosphatase K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 406.0
SHD3_k127_4694856_9 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006915 378.0
SHD3_k127_4706953_0 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004403 326.0
SHD3_k127_4706953_1 Protein of unknown function (DUF1016) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001735 237.0
SHD3_k127_4706953_3 Integrase core domain - - - 0.000003599 53.0
SHD3_k127_4709351_0 Glutamate synthase - - - 9.967e-202 642.0
SHD3_k127_4709351_1 GXGXG motif - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 569.0
SHD3_k127_4709351_2 glutamate synthase activity - - - 0.00000000000000003302 82.0
SHD3_k127_4741645_0 pfam abc K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009639 276.0
SHD3_k127_4741645_1 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000191 270.0
SHD3_k127_4741645_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000008936 222.0
SHD3_k127_4741645_3 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000001488 186.0
SHD3_k127_4741645_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000001241 136.0
SHD3_k127_4741645_5 DNA-binding transcription factor activity K03892 - - 0.000000000000000000000008034 104.0
SHD3_k127_4741645_6 ABC-type transport system, involved in lipoprotein release, permease component K02004 - - 0.0000000000000000000003736 111.0
SHD3_k127_4741645_7 MacB-like periplasmic core domain - - - 0.00000000000000002618 89.0
SHD3_k127_4741645_8 WD domain, G-beta repeat - - - 0.000003421 61.0
SHD3_k127_4741645_9 FHA domain - - - 0.000009971 59.0
SHD3_k127_4749441_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 377.0
SHD3_k127_4749441_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 314.0
SHD3_k127_4749441_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 302.0
SHD3_k127_4749441_3 PFAM Phosphate-selective porin O K07221 - - 0.00000000000000000000000000000000000000000000000000000000000004204 233.0
SHD3_k127_4749441_4 Domain of unknown function (DUF4136) - - - 0.0000000000000000006022 93.0
SHD3_k127_4749441_5 Biotin-lipoyl like - - - 0.000000002982 68.0
SHD3_k127_4749441_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000003667 59.0
SHD3_k127_4749441_7 outer membrane efflux protein - - - 0.00000006728 58.0
SHD3_k127_4749441_8 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00003714 49.0
SHD3_k127_47526_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2261.0
SHD3_k127_47526_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 3.789e-239 742.0
SHD3_k127_47526_2 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 324.0
SHD3_k127_47526_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001794 257.0
SHD3_k127_47526_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000008948 215.0
SHD3_k127_47526_5 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000001 202.0
SHD3_k127_47526_6 Ribosomal protein L7/L12 dimerisation domain K02935 - - 0.0000000000000000000000000000000000000000006744 160.0
SHD3_k127_47526_7 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000000000000000000000000000009126 133.0
SHD3_k127_47526_8 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000315 72.0
SHD3_k127_47526_9 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000008285 55.0
SHD3_k127_4755264_0 NADH-quinone oxidoreductase subunit F K18005 - 1.12.1.2 1.209e-211 675.0
SHD3_k127_4755264_1 Nickel-dependent hydrogenase K00436 - 1.12.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 549.0
SHD3_k127_4755264_2 NADH ubiquinone oxidoreductase K18006,K18007 - 1.12.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008586 278.0
SHD3_k127_4755264_3 Coenzyme F420-reducing hydrogenase, gamma subunit K18007 - 1.12.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000001343 250.0
SHD3_k127_4756997_0 Reverse transcriptase (RNA-dependent DNA polymerase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004049 503.0
SHD3_k127_4756997_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002302 343.0
SHD3_k127_4756997_2 Belongs to the serpin family K13963 - - 0.000000000000000000000000000000000000000000000000000000000007189 225.0
SHD3_k127_4756997_3 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000004135 201.0
SHD3_k127_4756997_4 sequence-specific DNA binding - - - 0.0000000000000000000000000000000000000000000001018 174.0
SHD3_k127_4756997_5 addiction module antidote protein HigA K07110,K21686 - - 0.0000000000000000000000000000000003435 142.0
SHD3_k127_4756997_7 Peptidase M50 - - - 0.0000000000000003548 86.0
SHD3_k127_4756997_9 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.00004505 55.0
SHD3_k127_475986_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 7.133e-218 699.0
SHD3_k127_475986_1 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 361.0
SHD3_k127_475986_2 Roadblock/LC7 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005587 292.0
SHD3_k127_475986_3 - - - - 0.000000000000000000000000000000000002375 142.0
SHD3_k127_4765617_0 PAS domain K13924 - 2.1.1.80,3.1.1.61 0.0 1395.0
SHD3_k127_4765617_1 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 417.0
SHD3_k127_4765617_2 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000006543 243.0
SHD3_k127_4765617_3 Protein of unknown function (DUF418) K07148 - - 0.000000000000000000000000000000000001069 144.0
SHD3_k127_4765617_4 Forkhead associated domain - - - 0.0000000001173 70.0
SHD3_k127_477331_0 KaiC K08482 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000755 424.0
SHD3_k127_477331_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008787 418.0
SHD3_k127_477331_2 KaiC K08482 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009464 346.0
SHD3_k127_477331_3 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.0000000000000000000000000000000000000000000000000000000000002968 224.0
SHD3_k127_477331_4 Pfam:KaiC - - - 0.000000000000000000000000000000000000000000000000000000003924 209.0
SHD3_k127_477331_5 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.000000000000000000000000000000000000000005266 161.0
SHD3_k127_477331_6 ATPase. Has a role at an early stage in the morphogenesis of the spore coat - - - 0.000000000000000000000000000002464 135.0
SHD3_k127_477331_7 - - - - 0.00000289 59.0
SHD3_k127_477331_8 4-vinyl reductase, 4VR - - - 0.000026 53.0
SHD3_k127_4774744_0 - - - - 0.0000000000000000000000000000000000000000000000135 185.0
SHD3_k127_4774744_2 von Willebrand factor (vWF) type A domain - - - 0.00000000004976 74.0
SHD3_k127_478116_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000001027 189.0
SHD3_k127_478116_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000001005 162.0
SHD3_k127_478116_2 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000005495 115.0
SHD3_k127_478116_3 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000002063 58.0
SHD3_k127_478116_4 Trypsin - - - 0.000008721 57.0
SHD3_k127_4797385_0 Histidine kinase K03407,K13490 - 2.7.13.3 1.502e-235 749.0
SHD3_k127_4797385_1 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 589.0
SHD3_k127_4797385_2 Outer membrane receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000952 497.0
SHD3_k127_4797385_3 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005989 277.0
SHD3_k127_4797385_4 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000005126 271.0
SHD3_k127_4797385_6 chemotaxis K03408 - - 0.000000000000000000000002674 108.0
SHD3_k127_4797385_7 GGDEF domain K02488,K21025 - 2.7.7.65 0.00000000000000000000001832 109.0
SHD3_k127_4797385_8 protein-glutamate O-methyltransferase activity K00575,K13486 - 2.1.1.80 0.000000000000000007874 86.0
SHD3_k127_480932_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 1.067e-195 649.0
SHD3_k127_480932_2 - - - - 0.000000000000000000001327 103.0
SHD3_k127_4826842_0 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 468.0
SHD3_k127_4826842_1 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001057 282.0
SHD3_k127_4826842_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009441 275.0
SHD3_k127_4826842_3 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.0000000000000000000000000000000000000000000005788 181.0
SHD3_k127_4826842_4 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0033890,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360 3.1.13.5 0.000000000000000000000000000406 132.0
SHD3_k127_4826842_5 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000008126 105.0
SHD3_k127_4835713_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 474.0
SHD3_k127_4835713_1 nickel cation binding K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004762 383.0
SHD3_k127_4835713_10 - - - - 0.000000000000007266 88.0
SHD3_k127_4835713_11 - - - - 0.0000000000006892 71.0
SHD3_k127_4835713_12 - - - - 0.000000001074 70.0
SHD3_k127_4835713_13 LemA family K03744 - - 0.0000001248 61.0
SHD3_k127_4835713_14 Transmembrane and TPR repeat-containing protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048878,GO:0050801,GO:0055065,GO:0055074,GO:0055080,GO:0065007,GO:0065008,GO:0072507,GO:0098771,GO:0098827 - 0.0000002137 58.0
SHD3_k127_4835713_15 - - - - 0.000001204 60.0
SHD3_k127_4835713_16 - - - - 0.0007536 51.0
SHD3_k127_4835713_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 359.0
SHD3_k127_4835713_3 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 343.0
SHD3_k127_4835713_4 Putative Fe-S cluster - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029 307.0
SHD3_k127_4835713_5 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000003689 215.0
SHD3_k127_4835713_6 EcsC protein family - - - 0.000000000000000000000000000000000000000000000003483 183.0
SHD3_k127_4835713_7 Transcriptional regulator - - - 0.00000000000000000000000000000000000000001105 156.0
SHD3_k127_4835713_8 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000000000000000000000001094 143.0
SHD3_k127_4835713_9 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000006038 109.0
SHD3_k127_483798_0 DNA RNA helicase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 597.0
SHD3_k127_483798_1 Elongator protein 3, MiaB family, Radical SAM K22318 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 482.0
SHD3_k127_483798_10 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000125 153.0
SHD3_k127_483798_11 PAP2 superfamily C-terminal - - - 0.000000000000000000000000000000000002888 147.0
SHD3_k127_483798_12 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000001438 138.0
SHD3_k127_483798_14 TIGRFAM universal bacterial protein YeaZ K14742 - - 0.0000000000000000000001001 111.0
SHD3_k127_483798_15 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.000000000000000000004749 103.0
SHD3_k127_483798_16 PHAX RNA-binding domain K14291 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006351,GO:0006366,GO:0006403,GO:0006405,GO:0006408,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009987,GO:0010467,GO:0015630,GO:0015643,GO:0015931,GO:0016070,GO:0016073,GO:0018130,GO:0019438,GO:0031974,GO:0031981,GO:0032774,GO:0033036,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036477,GO:0042795,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051030,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0097064,GO:0097159,GO:0097458,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 0.000000004819 68.0
SHD3_k127_483798_18 amine dehydrogenase activity K00869,K00938,K20276 - 2.7.1.36,2.7.4.2 0.0005371 47.0
SHD3_k127_483798_2 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 343.0
SHD3_k127_483798_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004195 345.0
SHD3_k127_483798_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003743 262.0
SHD3_k127_483798_5 cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001234 258.0
SHD3_k127_483798_6 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000001141 218.0
SHD3_k127_483798_7 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000006068 192.0
SHD3_k127_483798_8 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000003344 189.0
SHD3_k127_483798_9 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000000000000000000000000000000000009647 188.0
SHD3_k127_4840101_0 Belongs to the carbamoyltransferase HypF family K04656 - - 1.279e-263 832.0
SHD3_k127_4840101_1 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 518.0
SHD3_k127_4840101_2 TIGRFAM hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 422.0
SHD3_k127_4840101_3 COG4992 Ornithine acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 367.0
SHD3_k127_4840101_4 Aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003661 336.0
SHD3_k127_4840101_5 Domain of unknown function (DUF4010) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 316.0
SHD3_k127_4840101_6 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.0000000000000000000002215 112.0
SHD3_k127_4840101_7 TIGRFAM hydrogenase assembly chaperone hypC hupF K04653 - - 0.000000000000000000002359 95.0
SHD3_k127_4840101_8 Protein of unknown function DUF45 K07043 - - 0.00005417 53.0
SHD3_k127_4851072_0 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 422.0
SHD3_k127_4851072_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000996 386.0
SHD3_k127_4851072_12 oxidoreductase activity K07114 - - 0.00000002282 67.0
SHD3_k127_4851072_13 Stigma-specific protein, Stig1 - - - 0.00000165 57.0
SHD3_k127_4851072_2 Cytidylyltransferase family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000004204 263.0
SHD3_k127_4851072_3 Alpha/beta hydrolase family K06889 - - 0.0000000000000000000000000000000000000000000000000000000000003128 222.0
SHD3_k127_4851072_4 Major Facilitator Superfamily K08223 - - 0.000000000000000000000000000000000000000000000000000000002308 222.0
SHD3_k127_4851072_6 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000004702 141.0
SHD3_k127_4851072_7 - - - - 0.00000000000000000000000000000001035 129.0
SHD3_k127_4851072_8 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000002124 127.0
SHD3_k127_4851072_9 Rubrerythrin - - - 0.0000000000000000000000000001509 131.0
SHD3_k127_4868130_0 Protein kinase domain K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003913 401.0
SHD3_k127_4868130_1 transcription factor binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 314.0
SHD3_k127_4868130_2 histone H2A K63-linked ubiquitination - - - 0.0000000000000000003808 96.0
SHD3_k127_48792_0 E1-E2 ATPase K12955 - - 0.0 1046.0
SHD3_k127_48792_1 TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 458.0
SHD3_k127_48792_2 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 351.0
SHD3_k127_48792_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000002614 65.0
SHD3_k127_48792_6 Glycosyl Hydrolase Family 88 - - - 0.000001109 61.0
SHD3_k127_4881132_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1465.0
SHD3_k127_4881132_1 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002917 296.0
SHD3_k127_4881132_2 - - - - 0.0000000000000000002839 91.0
SHD3_k127_4884527_0 Glycosyl hydrolase 36 superfamily, catalytic domain K00702 - 2.4.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006696 524.0
SHD3_k127_4884527_1 inositol monophosphate 1-phosphatase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 400.0
SHD3_k127_4884527_2 transporter K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 387.0
SHD3_k127_4884527_3 YCII-related domain K09780 - - 0.00000000000000000000569 94.0
SHD3_k127_4884527_4 Helix-turn-helix domain - - - 0.00000000000000003668 84.0
SHD3_k127_4896508_0 Type III secretion protein K03230 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 489.0
SHD3_k127_4896508_1 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005163 329.0
SHD3_k127_4896508_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000664 316.0
SHD3_k127_4896508_3 FIST C domain - GO:0008150,GO:0040007 - 0.0000000000000000000000000000000000000000000000000000000000000003247 234.0
SHD3_k127_4896508_4 Arginosuccinate synthase K01940 - 6.3.4.5 0.000000000000000000000000000000000000005375 150.0
SHD3_k127_4907660_0 protein kinase activity - - - 2.868e-259 832.0
SHD3_k127_4907660_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 5.345e-195 620.0
SHD3_k127_4907660_2 Si dkey-21a6.5 - - - 0.000000003994 68.0
SHD3_k127_4915950_0 Integrase core domain - - - 0.000000000000000000000000000000000003986 141.0
SHD3_k127_4915950_1 Peptidase family M28 - - - 0.0000000000000000000000000000000443 139.0
SHD3_k127_4915950_2 protein kinase activity - - - 0.000000000000000000000002759 121.0
SHD3_k127_4915950_3 DNA integration - - - 0.00000000000000000000001886 106.0
SHD3_k127_4915950_4 serine-type endopeptidase activity - - - 0.00000000000000000009952 106.0
SHD3_k127_4915950_5 Glycosyl hydrolases family 11 - - - 0.000000000000000007556 94.0
SHD3_k127_4915950_7 PFAM Resolvase K06400 - - 0.00000004396 65.0
SHD3_k127_4915950_8 - - - - 0.00007014 57.0
SHD3_k127_4915950_9 PQQ-like domain - - - 0.0001998 54.0
SHD3_k127_4917131_0 Tetratricopeptide repeat - - - 0.0 1055.0
SHD3_k127_4917131_1 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 400.0
SHD3_k127_4917131_10 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000000000006855 145.0
SHD3_k127_4917131_11 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000003676 126.0
SHD3_k127_4917131_12 Tetratricopeptide repeat - - - 0.00000000000000000002775 101.0
SHD3_k127_4917131_13 Surface antigen - - - 0.000000000000000001129 89.0
SHD3_k127_4917131_14 Iron-sulfur cluster-binding domain K06139 - - 0.00000000000001603 84.0
SHD3_k127_4917131_15 Transmembrane secretion effector - - - 0.00000000001634 76.0
SHD3_k127_4917131_18 cAMP-dependent protein kinase regulatory subunit K04739 GO:0000003,GO:0000166,GO:0000228,GO:0000785,GO:0000790,GO:0001932,GO:0001933,GO:0002831,GO:0002832,GO:0003674,GO:0004857,GO:0004860,GO:0004862,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005886,GO:0005952,GO:0006469,GO:0006950,GO:0006979,GO:0007154,GO:0008104,GO:0008150,GO:0008277,GO:0008603,GO:0009266,GO:0009267,GO:0009405,GO:0009408,GO:0009605,GO:0009607,GO:0009628,GO:0009653,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010563,GO:0010570,GO:0010605,GO:0010639,GO:0010646,GO:0010648,GO:0016020,GO:0017076,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0019954,GO:0022603,GO:0023051,GO:0023057,GO:0030154,GO:0030234,GO:0030291,GO:0030435,GO:0030436,GO:0030447,GO:0030448,GO:0030551,GO:0030552,GO:0030554,GO:0031279,GO:0031281,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032268,GO:0032269,GO:0032386,GO:0032388,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033554,GO:0033673,GO:0034305,GO:0034599,GO:0034605,GO:0034613,GO:0036094,GO:0036170,GO:0036180,GO:0040007,GO:0040008,GO:0042173,GO:0042221,GO:0042325,GO:0042326,GO:0042594,GO:0043085,GO:0043086,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043934,GO:0043936,GO:0043937,GO:0043938,GO:0043943,GO:0043945,GO:0043949,GO:0043951,GO:0044092,GO:0044093,GO:0044182,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045744,GO:0045761,GO:0045762,GO:0045786,GO:0045859,GO:0045881,GO:0045926,GO:0045936,GO:0046578,GO:0046580,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051056,GO:0051058,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051246,GO:0051248,GO:0051338,GO:0051339,GO:0051348,GO:0051349,GO:0051445,GO:0051447,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0060258,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071496,GO:0071900,GO:0071901,GO:0071944,GO:0080090,GO:0080134,GO:0090087,GO:0090316,GO:0097159,GO:0097271,GO:0097367,GO:0098772,GO:0106070,GO:0106072,GO:0110033,GO:0110034,GO:1900428,GO:1900429,GO:1900434,GO:1900435,GO:1900443,GO:1900444,GO:1901265,GO:1901363,GO:1902531,GO:1902532,GO:1902659,GO:1902660,GO:1903664,GO:1903666,GO:1903827,GO:1903829,GO:1904951,GO:2000241,GO:2000242,GO:2000479,GO:2000480 - 0.000003731 59.0
SHD3_k127_4917131_19 - - - - 0.00002642 56.0
SHD3_k127_4917131_2 amino acid activation for nonribosomal peptide biosynthetic process K14379 - 3.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 300.0
SHD3_k127_4917131_3 dehydrogenase complex catalyzes the overall conversion of - - - 0.000000000000000000000000000000000000000000000000000007973 202.0
SHD3_k127_4917131_4 FR47-like protein - - - 0.00000000000000000000000000000000000000000000000000114 194.0
SHD3_k127_4917131_5 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000005864 194.0
SHD3_k127_4917131_6 - - - - 0.00000000000000000000000000000000000000000000006042 180.0
SHD3_k127_4917131_7 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897,K02182,K05939 - 2.3.1.40,6.2.1.20,6.2.1.3,6.2.1.48 0.0000000000000000000000000000000000000000000001679 175.0
SHD3_k127_4917131_8 PFAM methyltransferase - - - 0.0000000000000000000000000000000000000000008817 177.0
SHD3_k127_4917131_9 - - - - 0.0000000000000000000000000000000000003526 148.0
SHD3_k127_4925769_0 ABC-type uncharacterized transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003306 539.0
SHD3_k127_4925769_1 ErfK ybiS ycfS ynhG family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000281 515.0
SHD3_k127_4925769_10 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.000000000000000001214 89.0
SHD3_k127_4925769_11 Molecular chaperone. Has ATPase activity K04079 - - 0.000000000000000007262 85.0
SHD3_k127_4925769_12 Trypsin-like serine protease - - - 0.0000000149 66.0
SHD3_k127_4925769_14 - - - - 0.0006012 50.0
SHD3_k127_4925769_2 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 491.0
SHD3_k127_4925769_3 ABC transporter, ATP-binding protein K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 377.0
SHD3_k127_4925769_4 Sulfatase K01133 - 3.1.6.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 342.0
SHD3_k127_4925769_5 Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006711 323.0
SHD3_k127_4925769_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006967 286.0
SHD3_k127_4925769_7 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000002037 250.0
SHD3_k127_4925769_8 TIGRFAM iron-sulfur cluster binding protein K18979 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000005358 218.0
SHD3_k127_4925769_9 - - - - 0.000000000000000000000000000000000000000005449 166.0
SHD3_k127_4934957_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 2158.0
SHD3_k127_4934957_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000006072 223.0
SHD3_k127_4934957_2 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000000000001852 169.0
SHD3_k127_4934957_3 FHA domain - - - 0.0000000000000000000000000000000000000001717 166.0
SHD3_k127_4934957_4 - - - - 0.000000000000000000001524 108.0
SHD3_k127_4934957_5 iron ion homeostasis - - - 0.000000000005206 79.0
SHD3_k127_4937865_0 dockerin type K15924 - 3.2.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004179 383.0
SHD3_k127_4937865_2 Glycine-rich RNA-binding protein K12741 - - 0.000000000000000000000000001021 116.0
SHD3_k127_4937865_3 COG1278 Cold shock - - - 0.000000000000000000000000008467 110.0
SHD3_k127_4937865_4 Belongs to the glycosyl hydrolase 30 family K01181,K15921,K15924 - 3.2.1.136,3.2.1.55,3.2.1.8 0.0000000000000000000202 106.0
SHD3_k127_4937865_5 Protein of unknown function (DUF3892) - - - 0.00000000003232 72.0
SHD3_k127_4937865_6 - - - - 0.0000009868 53.0
SHD3_k127_4937865_7 Leucine-rich repeat (LRR) protein K13730 - - 0.00004207 51.0
SHD3_k127_4937865_8 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0002496 43.0
SHD3_k127_4939900_0 Belongs to the PstS family K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005281 419.0
SHD3_k127_4939900_1 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 286.0
SHD3_k127_4939900_2 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.000000000000000000000000000000000001358 142.0
SHD3_k127_4939900_3 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000004143 63.0
SHD3_k127_4944701_0 Pfam Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006797 334.0
SHD3_k127_4944701_1 DNA modification repair radical SAM protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009027 280.0
SHD3_k127_4944701_2 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006043 270.0
SHD3_k127_4944701_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000004498 144.0
SHD3_k127_4944701_4 response regulator K02657,K03413 - - 0.000000000000000000000277 101.0
SHD3_k127_4944701_5 cellulose binding - - - 0.00000008171 64.0
SHD3_k127_495300_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 3.422e-233 740.0
SHD3_k127_495300_1 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 437.0
SHD3_k127_495300_2 Domain present in PSD-95, Dlg, and ZO-1/2. K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 387.0
SHD3_k127_495300_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008337 301.0
SHD3_k127_495300_4 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005678 261.0
SHD3_k127_495300_5 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000001218 232.0
SHD3_k127_4956894_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K06001 - 4.2.1.20 1.264e-200 634.0
SHD3_k127_4956894_1 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 471.0
SHD3_k127_4956894_10 Belongs to the ompA family - - - 0.00000000000000000000006738 104.0
SHD3_k127_4956894_11 - - - - 0.0000000000000000000001533 113.0
SHD3_k127_4956894_12 - - - - 0.0000000000009902 70.0
SHD3_k127_4956894_13 DNA/RNA non-specific endonuclease K01173 - - 0.00000000001395 77.0
SHD3_k127_4956894_14 histidine kinase A domain protein - - - 0.000000006237 67.0
SHD3_k127_4956894_2 cytochrome C peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003822 452.0
SHD3_k127_4956894_3 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 315.0
SHD3_k127_4956894_4 aminopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001032 290.0
SHD3_k127_4956894_5 isomerase activity K06998 - 5.3.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009566 280.0
SHD3_k127_4956894_6 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000002583 236.0
SHD3_k127_4956894_7 GRAS domain family - - - 0.000000000000000000000000000000000000000000000000000000000009375 221.0
SHD3_k127_4956894_8 RNA pseudouridylate synthase K06175 - 5.4.99.26 0.0000000000000000000000000000000000000000000000000008736 193.0
SHD3_k127_4956894_9 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000291 172.0
SHD3_k127_4963718_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 1.63e-258 811.0
SHD3_k127_4963718_1 polysaccharide catabolic process K01179 GO:0005575,GO:0005576 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005539 401.0
SHD3_k127_4963718_2 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001881 244.0
SHD3_k127_4963718_3 Family membership K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000003244 245.0
SHD3_k127_4963718_4 peptidyl-tyrosine sulfation - - - 0.0000000008648 70.0
SHD3_k127_4976353_0 PFAM peptidase M3A and M3B thimet oligopeptidase F K08602 - - 1.818e-210 670.0
SHD3_k127_4976353_1 Belongs to the xylose isomerase family K01805 - 5.3.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 593.0
SHD3_k127_4976353_10 RibD C-terminal domain - - - 0.00000000000000001285 88.0
SHD3_k127_4976353_12 - - - - 0.0008456 51.0
SHD3_k127_4976353_2 FGGY family of carbohydrate kinases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004005 502.0
SHD3_k127_4976353_3 MFS/sugar transport protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 347.0
SHD3_k127_4976353_4 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001879 267.0
SHD3_k127_4976353_6 Periplasmic binding protein LacI transcriptional regulator K02529 - - 0.0000000000000000000000000000000000000000000000004739 192.0
SHD3_k127_4976353_7 D-alanyl-D-alanine carboxypeptidase K17733 - - 0.000000000000000000000001299 112.0
SHD3_k127_4976353_8 Low molecular weight phosphatase family K01104 - 3.1.3.48 0.0000000000000000000007606 107.0
SHD3_k127_4977772_0 Domain of unknown function (DUF5110) K01811 - 3.2.1.177 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004678 279.0
SHD3_k127_4977772_1 Belongs to the glycosyl hydrolase 11 (cellulase G) family K01181 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005797 282.0
SHD3_k127_4977772_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.000000000000000000000000000001904 124.0
SHD3_k127_4977772_3 Integrase - - - 0.000000000000000000000000003764 115.0
SHD3_k127_4977772_4 Glycosyl hydrolases family 8 - - - 0.0000000001697 65.0
SHD3_k127_4984678_0 Carbamoyl-phosphate synthetase large chain, oligomerisation K01955 - 6.3.5.5 0.0 1643.0
SHD3_k127_4984678_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 9.508e-216 678.0
SHD3_k127_4984678_10 coproporphyrinogen III oxidase K21936 - 2.1.1.342 0.000000000000001727 83.0
SHD3_k127_4984678_11 Hydrogenase maturation protease - - - 0.0000000000001462 78.0
SHD3_k127_4984678_12 palmitoyl-(protein) hydrolase activity K06999 - - 0.000004009 57.0
SHD3_k127_4984678_2 Aldo Keto reductase K00064 - 1.1.1.122 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 416.0
SHD3_k127_4984678_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 394.0
SHD3_k127_4984678_4 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 397.0
SHD3_k127_4984678_5 Glycosyl transferase 4-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002403 363.0
SHD3_k127_4984678_6 SMART Elongator protein 3 MiaB NifB K04034 - 1.21.98.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 349.0
SHD3_k127_4984678_7 amino acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007399 306.0
SHD3_k127_4984678_8 Esterase PHB depolymerase K03932 - - 0.00000000000000000000000000000000000000000000000000000000001192 217.0
SHD3_k127_4984678_9 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000005985 200.0
SHD3_k127_4989875_0 Catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 487.0
SHD3_k127_4989875_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006971 488.0
SHD3_k127_4989875_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 427.0
SHD3_k127_4989875_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005537 374.0
SHD3_k127_4989875_4 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008476 296.0
SHD3_k127_4989875_5 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005881 290.0
SHD3_k127_4989875_6 Involved in the tonB-independent uptake of proteins - - - 0.000000000007684 78.0
SHD3_k127_4989875_7 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.0000000003672 62.0
SHD3_k127_4995899_0 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 404.0
SHD3_k127_4995899_1 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007813 323.0
SHD3_k127_4995899_2 Belongs to the ABC transporter superfamily K02031,K02032,K10823,K10824 - 3.6.3.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000813 303.0
SHD3_k127_4995899_3 Diphthamide synthase - - - 0.0000000000000000000000000000000000000000000001745 175.0
SHD3_k127_4995899_4 - - - - 0.0000000000000000000000000000000002168 141.0
SHD3_k127_4995899_5 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000000077 87.0
SHD3_k127_499784_0 ABC-type uncharacterized transport system - - - 7.303e-196 628.0
SHD3_k127_499784_1 Belongs to the glycosyl hydrolase 57 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009344 563.0
SHD3_k127_499784_2 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 475.0
SHD3_k127_499784_3 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 464.0
SHD3_k127_499784_4 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007467 281.0
SHD3_k127_499784_5 Domain of unknown function (DUF4340) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001116 273.0
SHD3_k127_499784_6 Hydrolases of the alpha beta superfamily K06889 - - 0.000000000000000000000000000000000000000000000000000000000000002721 229.0
SHD3_k127_499784_7 FliP family K03226 - - 0.000000000000000000000000000000000000000000000000001148 194.0
SHD3_k127_499784_8 - - - - 0.00002873 56.0
SHD3_k127_5003239_0 belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 3.46e-223 707.0
SHD3_k127_5003239_1 Cro/C1-type HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 326.0
SHD3_k127_5008871_0 Sodium/hydrogen exchanger family - - - 6.393e-216 692.0
SHD3_k127_5008871_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001469 265.0
SHD3_k127_5022005_0 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 380.0
SHD3_k127_5022005_1 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000002866 237.0
SHD3_k127_5022005_2 candidate b-glycosidase, glycoside hydrolase family 8 protein - - - 0.0000000000000000000000000000000000000000000000000000000003982 219.0
SHD3_k127_5022005_4 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 0.000006036 55.0
SHD3_k127_5022005_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00003519 53.0
SHD3_k127_5023937_0 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 616.0
SHD3_k127_5023937_1 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002401 270.0
SHD3_k127_5023937_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007791 278.0
SHD3_k127_5023937_3 GtrA-like protein - - - 0.00000000000000000000000000000000000006599 146.0
SHD3_k127_5023937_4 - - - - 0.0000000000000000000000000000003159 140.0
SHD3_k127_5023937_5 Stigma-specific protein, Stig1 - - - 0.00000000000000000001073 103.0
SHD3_k127_5023937_6 Stigma-specific protein, Stig1 - - - 0.00000000000000000001937 104.0
SHD3_k127_5023937_7 - - - - 0.00000000000005308 83.0
SHD3_k127_5023937_8 transferase activity, transferring glycosyl groups - - - 0.000001132 60.0
SHD3_k127_5023937_9 Domain of unknown function (DUF362) - - - 0.00002085 49.0
SHD3_k127_5027579_0 PFAM glycoside hydrolase, family 10 K01181 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 359.0
SHD3_k127_5027579_1 beta-galactosidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 323.0
SHD3_k127_5027579_2 PFAM regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000008394 253.0
SHD3_k127_5027579_4 Extracellular repeat protein, HAF family - - - 0.00000001889 67.0
SHD3_k127_5027579_5 Gametolysin peptidase M11 - - - 0.0000002641 61.0
SHD3_k127_5027579_6 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.0007856 46.0
SHD3_k127_5030614_0 Glycosyl transferase 4-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 447.0
SHD3_k127_5030614_1 Protein of unknown function (DUF1566) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004587 439.0
SHD3_k127_5030614_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005058 333.0
SHD3_k127_5030614_3 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000366 274.0
SHD3_k127_5030614_4 FR47-like protein - - - 0.00000000000000000000000000000000000000001355 160.0
SHD3_k127_5030614_5 serine-type endopeptidase activity - - - 0.00000005879 59.0
SHD3_k127_5033346_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 430.0
SHD3_k127_5033346_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000004969 195.0
SHD3_k127_5033346_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.00000000000000000000000000000000003658 154.0
SHD3_k127_5033346_3 Outer membrane efflux protein K15725 - - 0.0002279 53.0
SHD3_k127_5050863_0 PFAM NADH Ubiquinone plastoquinone (complex I) K00341,K05568,K12139,K14086 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002025 553.0
SHD3_k127_5050863_1 Metal binding domain of Ada K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003542 507.0
SHD3_k127_5050863_2 Glycosyltransferase Family 4 K14335 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001886 272.0
SHD3_k127_5050863_3 pathogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001359 262.0
SHD3_k127_5050863_4 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 0.000000000000000000000000000000000000001069 156.0
SHD3_k127_5050863_5 diguanylate cyclase - - - 0.0000000000000000000000000000000000007749 152.0
SHD3_k127_5050863_6 Uncharacterized protein conserved in bacteria (DUF2334) K06986 - - 0.00000000000000000000000201 114.0
SHD3_k127_505259_0 Asparagine synthase K01953 - 6.3.5.4 9.608e-278 874.0
SHD3_k127_505259_1 AMP-binding enzyme C-terminal domain - - - 5.493e-205 650.0
SHD3_k127_505259_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 430.0
SHD3_k127_505259_3 phosphoserine phosphatase activity K01768,K07315,K16922 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 389.0
SHD3_k127_505259_4 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008863 274.0
SHD3_k127_505259_5 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009588 259.0
SHD3_k127_505259_6 Phosphopantetheine attachment site - - - 0.00000000000000000000001812 102.0
SHD3_k127_5059317_0 PFAM ABC transporter K01990,K13926 - - 0.0 1472.0
SHD3_k127_5059317_1 PAS domain K13924 - 2.1.1.80,3.1.1.61 2.85e-276 886.0
SHD3_k127_5059317_10 Pas domain - - - 0.00000000000000000000000000000006754 147.0
SHD3_k127_5059317_11 Domain of unknown function (DUF1844) - - - 0.000000000000000000000000006118 112.0
SHD3_k127_5059317_12 - - - - 0.000000000000000000000000114 108.0
SHD3_k127_5059317_13 Histidine kinase - - - 0.000000000000377 80.0
SHD3_k127_5059317_2 Outer membrane efflux protein - - - 3.704e-212 672.0
SHD3_k127_5059317_3 PFAM ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002891 595.0
SHD3_k127_5059317_4 Biotin-lipoyl like K01993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006737 439.0
SHD3_k127_5059317_5 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 440.0
SHD3_k127_5059317_6 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 442.0
SHD3_k127_5059317_7 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 344.0
SHD3_k127_5059317_8 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002409 268.0
SHD3_k127_5059317_9 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000001658 221.0
SHD3_k127_5063368_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007251 460.0
SHD3_k127_5063368_1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004144 402.0
SHD3_k127_5063368_10 membrane protein (DUF2079) - - - 0.0000000007959 72.0
SHD3_k127_5063368_11 - - - - 0.000000001215 65.0
SHD3_k127_5063368_2 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 337.0
SHD3_k127_5063368_3 Glycosyltransferase like family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 344.0
SHD3_k127_5063368_4 Glycosyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000008768 241.0
SHD3_k127_5063368_5 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000000000000000000000000000000009602 169.0
SHD3_k127_5063368_6 membrane K06377 - - 0.0000000000000000000000000001372 123.0
SHD3_k127_5063368_7 DUF218 domain - - - 0.000000000000000000000000002514 117.0
SHD3_k127_5063368_8 membrane protein (DUF2079) - - - 0.0000000000000000002067 104.0
SHD3_k127_5063368_9 GtrA-like protein - - - 0.00000000000005432 78.0
SHD3_k127_5073590_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 389.0
SHD3_k127_5077493_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K13924 - 2.1.1.80,3.1.1.61 2.695e-286 932.0
SHD3_k127_5077493_1 Pfam:KaiC K08482 - - 5.092e-204 654.0
SHD3_k127_5077493_2 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004868 394.0
SHD3_k127_5077493_3 KaiB K08481 - - 0.00000000000000000000000000000000000007321 145.0
SHD3_k127_5077493_4 KaiB K08481 - - 0.00000000000000000000000000000008961 130.0
SHD3_k127_5077493_5 PFAM ATP-binding region, ATPase domain protein - - - 0.00000000000000000000003605 116.0
SHD3_k127_5087077_0 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 370.0
SHD3_k127_5087077_1 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.0000000000000000000000005583 111.0
SHD3_k127_5087077_2 - - - - 0.0000000000000000003257 96.0
SHD3_k127_5088794_0 Belongs to the glycosyl hydrolase 43 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 545.0
SHD3_k127_5088794_1 glycosyl hydrolase of K09955 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 385.0
SHD3_k127_5088794_2 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 369.0
SHD3_k127_5088794_3 Xylose operon regulatory protein K02529 - - 0.00000000000000000000000000000004296 132.0
SHD3_k127_5089797_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0 1015.0
SHD3_k127_5089797_1 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 497.0
SHD3_k127_5089797_10 Integrase core domain - - - 0.00000000000000000000000004898 111.0
SHD3_k127_5089797_11 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000004768 101.0
SHD3_k127_5089797_12 Integrase - - - 0.000000000005794 68.0
SHD3_k127_5089797_13 - - - - 0.0000000001378 74.0
SHD3_k127_5089797_14 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0000000003922 72.0
SHD3_k127_5089797_15 - - - - 0.0000000006316 66.0
SHD3_k127_5089797_17 - - - - 0.0001057 49.0
SHD3_k127_5089797_2 HB1, ASXL, restriction endonuclease HTH domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 439.0
SHD3_k127_5089797_3 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 312.0
SHD3_k127_5089797_4 xylan catabolic process K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001745 266.0
SHD3_k127_5089797_5 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001805 258.0
SHD3_k127_5089797_7 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000002624 186.0
SHD3_k127_5089797_8 DNA recombination-mediator protein A K04096 - - 0.000000000000000000000000000000000000000000000006268 184.0
SHD3_k127_5089797_9 EB module - - - 0.0000000000000000000000000000000000002261 156.0
SHD3_k127_5093206_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007148 444.0
SHD3_k127_5093206_1 RelA SpoT domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006441 438.0
SHD3_k127_5093206_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000002056 143.0
SHD3_k127_5093206_12 Radical SAM - - - 0.00000000000000000000000002712 117.0
SHD3_k127_5093206_13 - - - - 0.0000000000000000000000007207 108.0
SHD3_k127_5093206_16 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000308 84.0
SHD3_k127_5093206_18 Domain of unknown function (DUF4339) - - - 0.00000135 61.0
SHD3_k127_5093206_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009617 308.0
SHD3_k127_5093206_3 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 291.0
SHD3_k127_5093206_4 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000064 273.0
SHD3_k127_5093206_5 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000008764 268.0
SHD3_k127_5093206_6 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005725 261.0
SHD3_k127_5093206_7 Response regulator receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002 267.0
SHD3_k127_5093206_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000005142 222.0
SHD3_k127_5093206_9 FecR protein - - - 0.000000000000000000000000000000000000000000002406 179.0
SHD3_k127_5094149_0 Alpha galactosidase A K07407 - 3.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000619 370.0
SHD3_k127_5094149_1 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000005674 159.0
SHD3_k127_5094149_2 Extensin-like protein C-terminus - - - 0.00000000000000000000000000000000002973 149.0
SHD3_k127_5094149_3 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.0000000000000000000005034 102.0
SHD3_k127_5103520_0 Cysteine-rich secretory protein family - - - 0.00000000000000000000000000005696 131.0
SHD3_k127_5103520_1 - - - - 0.00000000000000000000000004121 113.0
SHD3_k127_5103520_2 Glutathione S-transferase K00799 - 2.5.1.18 0.000000004474 59.0
SHD3_k127_5103789_0 Putative metal-binding motif - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 618.0
SHD3_k127_5103789_1 guanyl-nucleotide exchange factor activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 597.0
SHD3_k127_5103789_2 extracellular matrix structural constituent - - - 0.0000000000000000000000000009318 119.0
SHD3_k127_5103789_3 Protein of unknown function (DUF1439) - - - 0.0000001069 61.0
SHD3_k127_5103789_4 Evidence 5 No homology to any previously reported sequences - - - 0.0004053 53.0
SHD3_k127_5111602_0 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 1.783e-208 673.0
SHD3_k127_5111602_1 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000000000000000000001124 105.0
SHD3_k127_5111602_2 Family membership - - - 0.00000000000000001878 96.0
SHD3_k127_5111602_3 Aminotransferase class-III K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.000000000000003067 83.0
SHD3_k127_5111602_4 - - - - 0.00001025 51.0
SHD3_k127_5115562_0 - - - - 2.048e-197 639.0
SHD3_k127_5115562_1 Belongs to the ompA family K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005546 426.0
SHD3_k127_5115562_2 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000007655 181.0
SHD3_k127_5125345_0 4Fe-4S dicluster domain - - - 1.317e-226 724.0
SHD3_k127_5125345_1 deoxyhypusine monooxygenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009346 246.0
SHD3_k127_5125345_2 SpoU rRNA Methylase family K00556 - 2.1.1.34 0.000000000000000000000000000000000000000000000000000000002049 206.0
SHD3_k127_5125345_3 PFAM Acyl-ACP thioesterase - - - 0.000000000000000000000000000000000000000000001363 175.0
SHD3_k127_5125345_4 PFAM transposase, mutator - - - 0.0000000000000000000000000000002472 126.0
SHD3_k127_5125345_6 Transposase, Mutator family K07493 - - 0.0000001014 55.0
SHD3_k127_5125345_7 Domain of unknown function (DUF4215) - - - 0.0001812 47.0
SHD3_k127_5139747_0 formate C-acetyltransferase glycine radical - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002837 552.0
SHD3_k127_5139747_1 TIGRFAM glycyl-radical enzyme activating protein family K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000004196 171.0
SHD3_k127_5144725_0 Beta-eliminating lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008969 613.0
SHD3_k127_5144725_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 508.0
SHD3_k127_5144725_2 Thaumatin family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001289 263.0
SHD3_k127_5144725_3 FHA domain - - - 0.000000000000000000000000000000000000000000000000000000000002212 234.0
SHD3_k127_5144725_4 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000003288 144.0
SHD3_k127_5144725_5 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000006227 111.0
SHD3_k127_5154675_0 CoA-substrate-specific enzyme activase - - - 0.0 1230.0
SHD3_k127_5154675_1 secondary active sulfate transmembrane transporter activity K06901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 603.0
SHD3_k127_5154675_10 PFAM Pentapeptide repeats (8 copies) - - - 0.000000000000000000000000001831 129.0
SHD3_k127_5154675_11 FecR protein - - - 0.0000000000000000001751 101.0
SHD3_k127_5154675_12 protein kinase activity - - - 0.00000000002242 77.0
SHD3_k127_5154675_13 Pfam:PA14_2 K01179,K10352 - 3.2.1.4 0.00000003586 64.0
SHD3_k127_5154675_14 Fimbrillin-like - - - 0.00001125 58.0
SHD3_k127_5154675_15 Polymer-forming cytoskeletal - - - 0.00009892 51.0
SHD3_k127_5154675_3 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 330.0
SHD3_k127_5154675_4 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003561 260.0
SHD3_k127_5154675_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000006836 197.0
SHD3_k127_5154675_6 diguanylate cyclase K02488 - 2.7.7.65 0.000000000000000000000000000000000000000000000002131 190.0
SHD3_k127_5154675_7 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000004007 181.0
SHD3_k127_5154675_8 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000277 161.0
SHD3_k127_5154675_9 Sulfatase-modifying factor enzyme 1 K12132 - 2.7.11.1 0.000000000000000000000000000003327 134.0
SHD3_k127_5156701_0 Cys Met metabolism pyridoxal-phosphate-dependent protein K01739,K01760 - 2.5.1.48,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009042 600.0
SHD3_k127_5156701_1 Belongs to the peptidase S51 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 383.0
SHD3_k127_5156701_10 B12 binding domain - - - 0.00000000000005671 79.0
SHD3_k127_5156701_11 Cytochrome c K00412 - - 0.00000001601 61.0
SHD3_k127_5156701_12 CAAX protease self-immunity K07052 - - 0.00001987 55.0
SHD3_k127_5156701_13 Uncharacterized conserved protein (DUF2304) K09153 - - 0.00006702 52.0
SHD3_k127_5156701_2 Male sterility protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 319.0
SHD3_k127_5156701_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001285 261.0
SHD3_k127_5156701_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006378 267.0
SHD3_k127_5156701_5 Glucose-6-phosphate dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000002852 209.0
SHD3_k127_5156701_6 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000001488 160.0
SHD3_k127_5156701_7 periplasmic protein K09797 - - 0.00000000000000000000000000000000000002259 155.0
SHD3_k127_5156701_9 Radical SAM - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000006069 119.0
SHD3_k127_5163988_0 amine dehydrogenase activity - - - 3.463e-261 870.0
SHD3_k127_5163988_1 amine dehydrogenase activity - - - 1.94e-211 698.0
SHD3_k127_5163988_10 - - - - 0.000000000000000000000000000000000000000003278 164.0
SHD3_k127_5163988_11 CAAX protease self-immunity K06177,K07052,K09696 - 5.4.99.28,5.4.99.29 0.000000000000000000000000000000000291 141.0
SHD3_k127_5163988_13 Forkhead associated domain - - - 0.0000000000000000000000000007354 124.0
SHD3_k127_5163988_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007754 459.0
SHD3_k127_5163988_3 Elongator protein 3, MiaB family, Radical SAM K22227 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 377.0
SHD3_k127_5163988_4 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 349.0
SHD3_k127_5163988_5 phosphoprotein phosphatase activity K07313 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 338.0
SHD3_k127_5163988_6 Protein kinase domain K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000003157 268.0
SHD3_k127_5163988_7 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000007757 258.0
SHD3_k127_5163988_8 Cys-tRNA(Pro) hydrolase activity K03976,K19055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005329 243.0
SHD3_k127_5163988_9 - - - - 0.000000000000000000000000000000000000000002135 162.0
SHD3_k127_5173330_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1079.0
SHD3_k127_5173330_1 Voltage gated chloride channel K03281 - - 6.452e-200 644.0
SHD3_k127_5173330_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000004776 229.0
SHD3_k127_5173330_11 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000004096 199.0
SHD3_k127_5173330_13 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000000189 147.0
SHD3_k127_5173330_14 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.0000000000000000000000000001902 119.0
SHD3_k127_5173330_15 protein histidine kinase activity - - - 0.000000000000000000379 98.0
SHD3_k127_5173330_16 Transcriptional regulator - - - 0.00000000003915 67.0
SHD3_k127_5173330_17 Histidine kinase - - - 0.00000000241 59.0
SHD3_k127_5173330_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944 1.6.5.3 5.001e-198 623.0
SHD3_k127_5173330_3 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 557.0
SHD3_k127_5173330_5 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity K12583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 421.0
SHD3_k127_5173330_6 Calcineurin-like phosphoesterase K07098 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 417.0
SHD3_k127_5173330_7 NUDIX domain K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 308.0
SHD3_k127_5173330_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000748 273.0
SHD3_k127_5173330_9 NAD(P)H dehydrogenase (quinone) activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001424 265.0
SHD3_k127_5173764_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006708 431.0
SHD3_k127_5173764_1 Belongs to the P-Pant transferase superfamily K06133 - - 0.00000000000000000000000000000000000001435 154.0
SHD3_k127_5173764_3 PFAM amidohydrolase 2 K03392 - 4.1.1.45 0.00000000001033 75.0
SHD3_k127_5179506_0 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009713 536.0
SHD3_k127_5179506_1 oxidoreductase, alpha subunit K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 439.0
SHD3_k127_5179506_10 4Fe-4S ferredoxin, iron-sulfur binding K00176 - 1.2.7.3 0.00000000000001895 80.0
SHD3_k127_5179506_2 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 424.0
SHD3_k127_5179506_3 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143 334.0
SHD3_k127_5179506_4 DRTGG domain K06873 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 316.0
SHD3_k127_5179506_5 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004672 309.0
SHD3_k127_5179506_6 Cytochrome C assembly protein - - - 0.000000000000000000000000000000000000000000000000000000000002584 216.0
SHD3_k127_5179506_7 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.00000000000000000000000000000000000000002849 161.0
SHD3_k127_5179506_8 TIGRFAM succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 - - 0.00000000000000000000000000000000007713 141.0
SHD3_k127_5179506_9 - - - - 0.00000000000000000000000002413 121.0
SHD3_k127_5191324_0 copper-translocating P-type ATPase K17686 - 3.6.3.54 1.102e-283 890.0
SHD3_k127_5191324_1 DNA methylase - - - 1.963e-240 769.0
SHD3_k127_5191324_10 Belongs to the CRISP family K13449 - - 0.00000000000000000000000000006527 122.0
SHD3_k127_5191324_11 protein conserved in bacteria - - - 0.00000000000000000000001346 109.0
SHD3_k127_5191324_12 RibD C-terminal domain - - - 0.000000000000000001469 90.0
SHD3_k127_5191324_13 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 GO:0005575,GO:0005576 - 0.0000000000005343 76.0
SHD3_k127_5191324_16 Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity - - - 0.00001574 49.0
SHD3_k127_5191324_2 Major Facilitator Superfamily K03446 - - 8.797e-207 658.0
SHD3_k127_5191324_4 Biotin-lipoyl like K03543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005369 353.0
SHD3_k127_5191324_5 Cation efflux family K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003573 254.0
SHD3_k127_5191324_6 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000008651 252.0
SHD3_k127_5191324_7 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000004472 245.0
SHD3_k127_5191324_8 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000000000000001196 205.0
SHD3_k127_5191324_9 PFAM Hemerythrin HHE cation binding domain protein - - - 0.0000000000000000000000000000000000000006158 156.0
SHD3_k127_5193269_0 Prolyl oligopeptidase K01322 - 3.4.21.26 1.5e-265 833.0
SHD3_k127_5193269_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002138 428.0
SHD3_k127_5193269_2 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007854 401.0
SHD3_k127_5193269_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003289 389.0
SHD3_k127_5193269_4 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 342.0
SHD3_k127_5193269_5 Zinc-dependent metalloprotease - - - 0.000000000000000000000000000000000000000000000000000000000000009012 227.0
SHD3_k127_5193269_6 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.000000000000000000000000000000000002948 149.0
SHD3_k127_5193269_7 enoyl-CoA hydratase K15312 - - 0.0000000000000000000001336 106.0
SHD3_k127_5198535_0 Major facilitator Superfamily K03292,K16248 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 523.0
SHD3_k127_5198535_1 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 297.0
SHD3_k127_5198535_2 Acid phosphatase homologues - - - 0.0000000000000000000000000000000000000000000000000000008325 211.0
SHD3_k127_5198535_3 General secretory system II, protein E domain protein K02454 - - 0.0000000000000000000000000000000000000000305 160.0
SHD3_k127_5210620_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.998e-284 884.0
SHD3_k127_5210620_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07305,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009248 357.0
SHD3_k127_5210620_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007158 319.0
SHD3_k127_5210620_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000001668 57.0
SHD3_k127_5217108_0 alpha-galactosidase activity K01189,K01204,K07407 - 3.2.1.22,3.2.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004979 513.0
SHD3_k127_5217108_1 Pyridoxal-dependent decarboxylase conserved domain K13745 - 4.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003903 495.0
SHD3_k127_5217108_2 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007899 319.0
SHD3_k127_5217108_3 Phospholipid methyltransferase - - - 0.000000000000000000000000000000000000000000000008171 179.0
SHD3_k127_5217108_4 negative regulation of transforming growth factor beta1 production K03068,K06261,K06593,K08867,K09187,K12488,K13738,K14972,K20050,K20371 GO:0000003,GO:0001654,GO:0001667,GO:0001745,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007423,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010631,GO:0016020,GO:0016043,GO:0016477,GO:0017124,GO:0019904,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030100,GO:0030154,GO:0030496,GO:0030707,GO:0030855,GO:0032153,GO:0032154,GO:0032155,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032794,GO:0032879,GO:0034329,GO:0034330,GO:0034332,GO:0034333,GO:0040011,GO:0043062,GO:0043063,GO:0044085,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0044703,GO:0045171,GO:0045177,GO:0045179,GO:0045216,GO:0045807,GO:0048259,GO:0048260,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048592,GO:0048609,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050839,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051302,GO:0051674,GO:0051704,GO:0051726,GO:0060429,GO:0060627,GO:0065007,GO:0071840,GO:0071944,GO:0090130,GO:0090132,GO:0090596,GO:0097435,GO:0098590,GO:0099568,GO:0099738 2.1.1.43,2.7.11.1 0.00000000000000000000000000000000000000000000002453 190.0
SHD3_k127_5217108_5 - - - - 0.00000000000000000000000000000008009 141.0
SHD3_k127_5217108_6 - - - - 0.00000000000000000000000000003843 134.0
SHD3_k127_5217108_7 radical SAM domain protein - - - 0.000000000001364 77.0
SHD3_k127_523018_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 2.567e-215 695.0
SHD3_k127_523018_1 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002136 630.0
SHD3_k127_523018_10 - K07283 - - 0.000000000000000000000000000000000000000000000000000002583 204.0
SHD3_k127_523018_11 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000000000000000000000009655 185.0
SHD3_k127_523018_12 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.00000000000000000000000000000000000000000000000008114 189.0
SHD3_k127_523018_14 NPCBM K07019 - - 0.0000000000000000000000000000000000000000001228 178.0
SHD3_k127_523018_15 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000001388 153.0
SHD3_k127_523018_16 PFAM Protein kinase domain K08309 - - 0.0000000000000000000000000000000000195 148.0
SHD3_k127_523018_17 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000007405 143.0
SHD3_k127_523018_18 protein kinase activity - - - 0.000000000000000000000000000001886 139.0
SHD3_k127_523018_19 Bacterial PH domain - - - 0.00000000000000000000000004279 112.0
SHD3_k127_523018_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 413.0
SHD3_k127_523018_20 Histidine kinase - - - 0.000000000000000000000008507 115.0
SHD3_k127_523018_22 PFAM Isoprenylcysteine carboxyl methyltransferase - - - 0.00000003371 58.0
SHD3_k127_523018_23 Stigma-specific protein, Stig1 - - - 0.0000007433 61.0
SHD3_k127_523018_24 FecR protein - - - 0.00001067 58.0
SHD3_k127_523018_3 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 395.0
SHD3_k127_523018_4 Glycosyl hydrolases family 16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006 351.0
SHD3_k127_523018_5 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 300.0
SHD3_k127_523018_6 transcription factor binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005724 293.0
SHD3_k127_523018_7 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000000000000000000000000000000002067 230.0
SHD3_k127_523018_8 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000175 242.0
SHD3_k127_523018_9 epimerase - - - 0.00000000000000000000000000000000000000000000000000000001238 209.0
SHD3_k127_5235457_0 Family membership K08884 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 304.0
SHD3_k127_5235457_1 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000163 211.0
SHD3_k127_5239627_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.354e-242 757.0
SHD3_k127_5239627_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 3.976e-209 674.0
SHD3_k127_5239627_2 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003475 565.0
SHD3_k127_5239627_3 TonB dependent receptor K02014,K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 477.0
SHD3_k127_5239627_4 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006138 326.0
SHD3_k127_5239627_5 Domain of unknown function (DUF4465) - - - 0.00000000000000000000000000000000000000000000000000000000007136 220.0
SHD3_k127_5239627_6 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000001892 155.0
SHD3_k127_5239627_7 - - - - 0.0000000000000000000000000000401 129.0
SHD3_k127_5239627_8 amine dehydrogenase activity - - - 0.00000000000000000000039 104.0
SHD3_k127_5240849_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1208.0
SHD3_k127_5240849_1 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 0.0000000000000000000000000000000000000000000000000000000000000000000002438 249.0
SHD3_k127_5240849_2 hydrogenase maturation protease K08315 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.23.51 0.0000000000000000000000007363 110.0
SHD3_k127_5240849_3 Alpha/beta hydrolase family - - - 0.00000000000477 75.0
SHD3_k127_5240849_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000009727 62.0
SHD3_k127_5240849_5 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0006089 44.0
SHD3_k127_5245395_0 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 439.0
SHD3_k127_5245395_1 DnaJ C terminal domain K03686,K05516 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 313.0
SHD3_k127_5245395_2 Fe-S oxidoreductases K22226 - - 0.000000000000000000000000000000000000000000000000000000000004497 218.0
SHD3_k127_5247141_0 PFAM bifunctional deaminase-reductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009898 295.0
SHD3_k127_5247141_1 glyoxalase III activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004873 257.0
SHD3_k127_5247141_2 PFAM Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000007951 215.0
SHD3_k127_5247141_3 TAP-like protein - - - 0.00000000000000000000000000000000000005158 161.0
SHD3_k127_5247141_4 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000000000000000000000002338 154.0
SHD3_k127_5247141_5 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000002567 139.0
SHD3_k127_5248082_0 helicase - - - 2.65e-227 733.0
SHD3_k127_5248082_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00003,K01139 - 1.1.1.3,2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008274 346.0
SHD3_k127_5248082_10 (FHA) domain - - - 0.0000000001518 70.0
SHD3_k127_5248082_11 Glycosyl hydrolases family 16 - - - 0.00000002443 67.0
SHD3_k127_5248082_2 Phage shock protein A K03969 GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006950,GO:0008150,GO:0008289,GO:0009266,GO:0009271,GO:0009408,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009889,GO:0009898,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0019897,GO:0019898,GO:0031234,GO:0031323,GO:0031326,GO:0042802,GO:0043167,GO:0043168,GO:0043207,GO:0043433,GO:0044092,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051171,GO:0051252,GO:0051704,GO:0051707,GO:0060187,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098552,GO:0098562,GO:0098586,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006279 265.0
SHD3_k127_5248082_3 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.0000000000000000000000000000000000000000000000000000000000000005213 226.0
SHD3_k127_5248082_5 von Willebrand factor type A domain K07114 - - 0.00000000000000000000000000000000000000000000006899 188.0
SHD3_k127_5248082_6 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401,K03229 - - 0.00000000000000000000000000000000000009285 155.0
SHD3_k127_5248082_7 Starch binding domain K01178 - 3.2.1.3 0.000000000000000000000002029 108.0
SHD3_k127_5248082_8 - - - - 0.000000000000000004166 98.0
SHD3_k127_5248082_9 ATP-binding protein involved in virulence - - - 0.00000000000000003668 84.0
SHD3_k127_5253578_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002766 569.0
SHD3_k127_5253578_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 496.0
SHD3_k127_5253578_10 Yqey-like protein K09117 - - 0.00002435 51.0
SHD3_k127_5253578_2 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 491.0
SHD3_k127_5253578_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 430.0
SHD3_k127_5253578_4 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 348.0
SHD3_k127_5253578_5 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000001915 206.0
SHD3_k127_5253578_6 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000009978 153.0
SHD3_k127_5253578_7 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000000000000001806 139.0
SHD3_k127_5253578_8 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000004332 89.0
SHD3_k127_5253578_9 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.00000000000000287 78.0
SHD3_k127_5256160_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004691 420.0
SHD3_k127_5256160_1 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008301 379.0
SHD3_k127_5256160_2 PFAM Serine threonine protein kinase-related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000494 345.0
SHD3_k127_5256160_3 acid phosphatase activity K03651 - 3.1.4.53 0.00000000000000000000000000000000000000000000009932 178.0
SHD3_k127_5256160_5 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000003053 138.0
SHD3_k127_5256160_7 PilZ domain - - - 0.00000000008016 66.0
SHD3_k127_5256160_8 - - - - 0.00000003922 61.0
SHD3_k127_5258482_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 3.213e-253 796.0
SHD3_k127_5258482_1 Molybdopterin oxidoreductase, iron-sulfur binding subunit K00184 - - 2.249e-232 762.0
SHD3_k127_5258482_10 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000000000000000000000000000000000000000000000000000000000000000000002814 251.0
SHD3_k127_5258482_11 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000004457 246.0
SHD3_k127_5258482_12 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.000000000000000000000000000000000000000001798 164.0
SHD3_k127_5258482_13 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000000000000007633 147.0
SHD3_k127_5258482_14 ABC transporter CydDC cysteine exporter (CydDC-E) family permease ATP-binding protein CydD K16013,K16014 - - 0.000000000000000000000000000000003371 147.0
SHD3_k127_5258482_16 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000001621 84.0
SHD3_k127_5258482_17 FCD - GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0032993,GO:0043207,GO:0043565,GO:0044403,GO:0044419,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0075136,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000002014 86.0
SHD3_k127_5258482_18 Evidence 5 No homology to any previously reported sequences - - - 0.0000000007885 71.0
SHD3_k127_5258482_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002982 592.0
SHD3_k127_5258482_3 Polysulphide reductase K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 497.0
SHD3_k127_5258482_4 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009252 444.0
SHD3_k127_5258482_5 CAAX protease self-immunity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 340.0
SHD3_k127_5258482_6 Protein of unknown function (DUF3341) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003127 324.0
SHD3_k127_5258482_7 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000001892 269.0
SHD3_k127_5258482_8 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002272 278.0
SHD3_k127_5258482_9 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001014 246.0
SHD3_k127_5260598_0 phosphorelay signal transduction system K02481,K07713,K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004951 507.0
SHD3_k127_5260598_1 Peptidase family M54 K06974 - - 0.0000000000000000000000000000006589 130.0
SHD3_k127_5260598_2 Protein-disulfide isomerase - - - 0.00000000000000000000003951 105.0
SHD3_k127_5260598_3 Histidine kinase - - - 0.00000000000000000000004356 104.0
SHD3_k127_5260598_4 Glycine cleavage H-protein - - - 0.00000000000000000003726 101.0
SHD3_k127_5260598_5 His Kinase A (phosphoacceptor) domain K02482 - 2.7.13.3 0.00000000000667 66.0
SHD3_k127_5266374_0 Tetratricopeptide repeat - - - 0.0 1367.0
SHD3_k127_5266374_1 Tetratricopeptide repeat - - - 1.523e-246 772.0
SHD3_k127_5266374_10 Histidine kinase - - - 0.00000000000000000000000000000000000000004845 160.0
SHD3_k127_5266374_11 HEAT repeats - - - 0.00000000000000000000000000004104 127.0
SHD3_k127_5266374_12 nuclease activity K07460 - - 0.0000000000000000000000000005474 118.0
SHD3_k127_5266374_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006272 400.0
SHD3_k127_5266374_4 adventurous gliding protein T - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 366.0
SHD3_k127_5266374_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 332.0
SHD3_k127_5266374_8 lyase activity - - - 0.0000000000000000000000000000000000000000000000000000000002627 212.0
SHD3_k127_5267949_0 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 327.0
SHD3_k127_5267949_1 RibD C-terminal domain - - - 0.0000000005179 67.0
SHD3_k127_5268269_0 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000008882 232.0
SHD3_k127_5268269_1 dockerin type K15924 - 3.2.1.136 0.0000000000000000000000000000000000000000000001528 186.0
SHD3_k127_5268269_2 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000000000000000000000000000001248 166.0
SHD3_k127_5268269_3 polysaccharide catabolic process K01179 - 3.2.1.4 0.0000000000000000000000000000000000002866 156.0
SHD3_k127_5268269_4 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000001241 73.0
SHD3_k127_5268269_5 domain, Protein - - - 0.00000008877 64.0
SHD3_k127_5268269_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00008068 48.0
SHD3_k127_5275079_0 Berberine and berberine like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 373.0
SHD3_k127_5275079_1 Calcium ion binding - GO:0002009,GO:0002165,GO:0003674,GO:0005198,GO:0005201,GO:0005575,GO:0005576,GO:0007275,GO:0007424,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007552,GO:0007560,GO:0007591,GO:0008150,GO:0008362,GO:0008587,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0022404,GO:0031012,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040003,GO:0040005,GO:0042303,GO:0042335,GO:0044421,GO:0044719,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0060429,GO:0060541,GO:0060562,GO:0065007,GO:0065008,GO:0090066 - 0.00007903 56.0
SHD3_k127_5284562_0 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004147 455.0
SHD3_k127_5284562_1 Belongs to the glycosyl hydrolase 8 (cellulase D) family K00694,K15531,K20542 - 2.4.1.12,3.2.1.156,3.2.1.4 0.000000000000000000000000000000000000000000000000000000001193 222.0
SHD3_k127_5284562_2 OsmC-like protein K07397 - - 0.00000000000000000000000000000000000000002652 158.0
SHD3_k127_5284562_3 protein trimerization - - - 0.000000000000000000004734 107.0
SHD3_k127_5284562_4 DNA-templated transcription, initiation K03088 - - 0.00000000000000000008318 94.0
SHD3_k127_5293030_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 376.0
SHD3_k127_5293030_1 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000006567 236.0
SHD3_k127_5293030_2 ferric iron binding K02217,K22336 GO:0001666,GO:0003674,GO:0003824,GO:0004322,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0016020,GO:0016491,GO:0016722,GO:0016724,GO:0019725,GO:0030003,GO:0030312,GO:0033212,GO:0033214,GO:0036293,GO:0042592,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051235,GO:0051238,GO:0051409,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070482,GO:0071944,GO:0097577,GO:0098771 1.16.3.1,1.16.3.2 0.000000000000000000000000000000000000000000000000003347 188.0
SHD3_k127_5293030_3 cheY-homologous receiver domain - - - 0.0000000000000000000006401 101.0
SHD3_k127_5294686_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1328.0
SHD3_k127_5294686_1 - - - - 1.711e-203 657.0
SHD3_k127_5294686_10 Sigma-70, region 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 294.0
SHD3_k127_5294686_11 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003217 288.0
SHD3_k127_5294686_12 PFAM chorismate K01665 - 2.6.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001771 291.0
SHD3_k127_5294686_13 SPFH domain-Band 7 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001793 282.0
SHD3_k127_5294686_14 Nucleotidyl transferase K00966 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000001069 252.0
SHD3_k127_5294686_16 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000002812 224.0
SHD3_k127_5294686_17 MerR HTH family regulatory protein - - - 0.0000000000000000000000000000000000000000000000000005422 188.0
SHD3_k127_5294686_18 PIN domain K07062 - - 0.000000000000000000000000000000000000000000001906 168.0
SHD3_k127_5294686_19 PBS lyase HEAT-like repeat - - - 0.00000000000000000000000000000000000000000001325 168.0
SHD3_k127_5294686_2 Arginyl tRNA synthetase N terminal dom K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 2.541e-201 651.0
SHD3_k127_5294686_20 - - - - 0.0000000000000000000000000000000000000000003451 169.0
SHD3_k127_5294686_21 proteolysis - - - 0.0000000000000000000000000000000000000000007765 175.0
SHD3_k127_5294686_22 Sporulation related domain - - - 0.00000000000000000000000000000000000000001674 163.0
SHD3_k127_5294686_24 transcriptional regulator K07722 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000001192 151.0
SHD3_k127_5294686_27 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.000000000000000000000000000000000002713 144.0
SHD3_k127_5294686_29 plasmid stabilization protein K21495 - - 0.000000000000000007667 87.0
SHD3_k127_5294686_3 Collagenase K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 535.0
SHD3_k127_5294686_30 Evidence 5 No homology to any previously reported sequences - - - 0.000002803 60.0
SHD3_k127_5294686_4 Domain of unknown function (DUF4388) K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006278 488.0
SHD3_k127_5294686_5 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 412.0
SHD3_k127_5294686_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 361.0
SHD3_k127_5294686_7 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004161 338.0
SHD3_k127_5294686_8 Domain of unknown function (DUF4388) K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 330.0
SHD3_k127_5294686_9 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008241 316.0
SHD3_k127_5308510_0 Domain of unknown function (DUF5110) K01811 - 3.2.1.177 0.0 1155.0
SHD3_k127_5308510_1 Glycosyl hydrolases family 28 - - - 1.532e-225 714.0
SHD3_k127_5308510_2 Esterase, phb depolymerase family K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002953 472.0
SHD3_k127_5308510_3 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003604 472.0
SHD3_k127_5308510_4 Domain present in PSD-95, Dlg, and ZO-1/2. K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 430.0
SHD3_k127_5308510_5 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 407.0
SHD3_k127_5308510_6 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000004297 163.0
SHD3_k127_5308510_7 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.00000000000007372 71.0
SHD3_k127_5308510_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000173 66.0
SHD3_k127_5327662_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 542.0
SHD3_k127_5327662_1 prohibitin homologues K07192 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004437 461.0
SHD3_k127_5327662_10 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000000000000000000000194 215.0
SHD3_k127_5327662_11 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000003534 216.0
SHD3_k127_5327662_12 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000000000000000004802 203.0
SHD3_k127_5327662_13 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000008353 194.0
SHD3_k127_5327662_14 Phosphotransferase enzyme family K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000002956 177.0
SHD3_k127_5327662_16 - - - - 0.0000000000000000000000000000000007388 139.0
SHD3_k127_5327662_18 Fe-S-cluster oxidoreductase K06940 - - 0.000000005198 66.0
SHD3_k127_5327662_19 Evidence 5 No homology to any previously reported sequences - - - 0.0000003067 63.0
SHD3_k127_5327662_2 prohibitin homologues K07192 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005574 419.0
SHD3_k127_5327662_20 transcriptional regulator - - - 0.000006405 56.0
SHD3_k127_5327662_3 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 398.0
SHD3_k127_5327662_4 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 336.0
SHD3_k127_5327662_5 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000635 286.0
SHD3_k127_5327662_6 DNA polymerase III K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000002872 283.0
SHD3_k127_5327662_7 PFAM NAD dependent epimerase dehydratase family K07071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004759 262.0
SHD3_k127_5327662_8 Ion channel K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000002772 237.0
SHD3_k127_5327662_9 Peptidase M15 K02395 - - 0.0000000000000000000000000000000000000000000000000000000000009224 224.0
SHD3_k127_5337037_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 2.028e-225 712.0
SHD3_k127_5337037_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000003683 181.0
SHD3_k127_5337037_2 alpha-ribazole phosphatase activity K01834,K15634,K22306 - 3.1.3.85,5.4.2.11,5.4.2.12 0.0000000000000000000000000000001632 132.0
SHD3_k127_5337037_4 - - - - 0.000000000000000004278 96.0
SHD3_k127_5346127_0 Radical SAM superfamily K06871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 369.0
SHD3_k127_5346127_1 Belongs to the GST superfamily K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 358.0
SHD3_k127_5346127_2 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002847 278.0
SHD3_k127_5346127_3 Helix-turn-helix XRE-family like proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006242 246.0
SHD3_k127_5346127_4 Radical SAM superfamily K06871 - - 0.00000000000000000000000000000000000000000000000000000000003631 226.0
SHD3_k127_5346127_5 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000000000001375 208.0
SHD3_k127_5346127_6 Helix-turn-helix XRE-family like proteins - - - 0.000000000000000000000000000000000000000000000000001472 205.0
SHD3_k127_5346127_8 sulfhydrylase K01740 - 2.5.1.49 0.0000000000000000000000000000001909 124.0
SHD3_k127_5346127_9 PFAM Glycosyltransferase family 9 (heptosyltransferase) K02843,K02849 - - 0.00004721 55.0
SHD3_k127_5347523_0 Belongs to the glycosyl hydrolase 43 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 555.0
SHD3_k127_5347523_1 beta-galactosidase activity K12308 - 3.2.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 402.0
SHD3_k127_5347523_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 322.0
SHD3_k127_5347523_3 Ricin-type beta-trefoil - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001433 289.0
SHD3_k127_5347523_4 Alpha-l-fucosidase K01206 GO:0003674,GO:0003824,GO:0004553,GO:0004560,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006516,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0015928,GO:0016787,GO:0016798,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000009373 275.0
SHD3_k127_5347523_5 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000007439 215.0
SHD3_k127_5350445_0 Cytochrome c bacterial - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009559 533.0
SHD3_k127_5350445_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008001 489.0
SHD3_k127_5350445_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003229 345.0
SHD3_k127_5350445_4 peptidase inhibitor activity - - - 0.000000000000000000000000000004619 132.0
SHD3_k127_5350445_5 Sulfatase - - - 0.0000000000000000000000004059 123.0
SHD3_k127_5354581_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 437.0
SHD3_k127_5354581_1 Type II IV secretion system protein K02283,K03609 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003813 411.0
SHD3_k127_5354581_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003996 296.0
SHD3_k127_5354581_3 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K11206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 297.0
SHD3_k127_5354581_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000003747 206.0
SHD3_k127_5354581_7 Sigma-54 dependent transcriptional regulator - - - 0.00001362 51.0
SHD3_k127_5359101_0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K03778 - 1.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 416.0
SHD3_k127_5359101_1 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 401.0
SHD3_k127_5359101_2 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000003968 244.0
SHD3_k127_5359101_3 ABC1 family - - - 0.000000000000000000000000000000000000000000000000000000002649 216.0
SHD3_k127_5359101_4 esterase - - - 0.00000000000000000000000000000000000000000000000000004689 197.0
SHD3_k127_5359101_5 cheY-homologous receiver domain - - - 0.000000000000000000000000001247 117.0
SHD3_k127_5359101_6 MORN repeat variant - - - 0.000000000000000000005542 104.0
SHD3_k127_5359101_7 - - - - 0.000000000000001637 85.0
SHD3_k127_5359101_8 - - - - 0.000000000002569 69.0
SHD3_k127_5361011_0 Tetratricopeptide repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 381.0
SHD3_k127_5361011_1 COG1061 DNA or RNA helicases of superfamily II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 328.0
SHD3_k127_5361011_2 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004951 313.0
SHD3_k127_5361011_3 Belongs to the PdxA family K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 315.0
SHD3_k127_5361011_4 Encoded by - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000125 280.0
SHD3_k127_5361011_5 SNARE associated Golgi protein - - - 0.000000000000000000000005894 109.0
SHD3_k127_5361011_6 COGs COG3372 conserved K09744 - - 0.00000000000002978 85.0
SHD3_k127_5361011_7 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.000000000008598 71.0
SHD3_k127_5367009_0 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 517.0
SHD3_k127_5367009_1 Pyridoxamine 5'-phosphate oxidase like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001232 243.0
SHD3_k127_5367009_2 Glycosyl hydrolase family 26 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002335 253.0
SHD3_k127_5367009_3 PA14 domain - - - 0.000000000000000000000000000000000000000000000000000000000000003423 230.0
SHD3_k127_5367009_4 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 GO:0000272,GO:0001871,GO:0003674,GO:0003824,GO:0004553,GO:0005488,GO:0005975,GO:0005976,GO:0006073,GO:0006080,GO:0008150,GO:0008152,GO:0008810,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010391,GO:0010410,GO:0016052,GO:0016787,GO:0016788,GO:0016798,GO:0017144,GO:0030243,GO:0030245,GO:0030246,GO:0030247,GO:0030248,GO:0042737,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0045491,GO:0045493,GO:0046555,GO:0051273,GO:0051275,GO:0052689,GO:0071554,GO:0071704,GO:1901575,GO:2000884 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000422 231.0
SHD3_k127_5367009_5 Glycosyl hydrolases family 16 - - - 0.00000000000000000000000000000000000000000000000005143 191.0
SHD3_k127_5367009_6 Glycosyl hydrolases family 16 - - - 0.00000000000000000000000000000000000000000001479 175.0
SHD3_k127_5367009_7 Beta-lactamase - - - 0.000000000000000000000000000000000000000007544 169.0
SHD3_k127_5367009_8 sequence-specific DNA binding K02099,K13529,K15051 - 3.2.2.21 0.0005623 44.0
SHD3_k127_5376182_0 Beta-L-arabinofuranosidase, GH127 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007832 538.0
SHD3_k127_5376182_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 528.0
SHD3_k127_5376182_10 PKD domain - - - 0.00000000000000002221 97.0
SHD3_k127_5376182_11 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.000000000000001074 80.0
SHD3_k127_5376182_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 494.0
SHD3_k127_5376182_3 SMART protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008857 475.0
SHD3_k127_5376182_4 deoxyhypusine monooxygenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009138 301.0
SHD3_k127_5376182_5 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004255 255.0
SHD3_k127_5376182_6 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000000194 212.0
SHD3_k127_5376182_7 Belongs to the ompA family K20276 - - 0.000000000000000000000000000000000000000003846 161.0
SHD3_k127_5376182_8 peptidyl-prolyl cis-trans isomerase activity K01802,K03769 - 5.2.1.8 0.0000000000000000000000000000000000002876 160.0
SHD3_k127_5376182_9 Belongs to the ompA family K20276 - - 0.00000000000000000002476 100.0
SHD3_k127_5383178_0 Tetratricopeptide repeat - - - 0.0 1342.0
SHD3_k127_5383178_1 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 491.0
SHD3_k127_5383178_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 410.0
SHD3_k127_5383178_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000284 399.0
SHD3_k127_5383178_4 polysaccharide export K01991 - - 0.000000000000000000000000000000000000000000000000000000000000004841 224.0
SHD3_k127_5383178_5 OmpA family - - - 0.000000000000000000000000000000000000000006938 168.0
SHD3_k127_5383178_6 - - - - 0.00000000000000000000000000000000000003105 151.0
SHD3_k127_5405202_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 6.578e-312 989.0
SHD3_k127_5405202_1 4Fe-4S single cluster domain K06937 - - 1.766e-223 709.0
SHD3_k127_5405202_10 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00005286 53.0
SHD3_k127_5405202_2 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008184 367.0
SHD3_k127_5405202_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 310.0
SHD3_k127_5405202_4 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.000000000000000000000000000000000000000000000009569 189.0
SHD3_k127_5405202_5 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000008297 181.0
SHD3_k127_5405202_6 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000009666 179.0
SHD3_k127_5405202_7 transcriptional regulator - - - 0.000000000000000004231 92.0
SHD3_k127_5418033_0 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000000000000001196 205.0
SHD3_k127_5418033_1 ABC-type transport system involved in lipoprotein release permease component - - - 0.00000000000000000000000000000000000000000000000001746 198.0
SHD3_k127_5418033_2 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000007308 179.0
SHD3_k127_5418033_3 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000003491 108.0
SHD3_k127_5418033_4 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000003348 102.0
SHD3_k127_5418033_5 ABC-type antimicrobial peptide transport system, ATPase component K02003,K02004 - - 0.00000007341 54.0
SHD3_k127_5418033_6 - - - - 0.0006931 51.0
SHD3_k127_5436198_0 3-deoxy-7-phosphoheptulonate synthase activity K00661,K03856,K04092,K04093,K04516,K04518,K14170,K14187 GO:0003674,GO:0003824,GO:0004106,GO:0004664,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0017144,GO:0019438,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223 1.3.1.12,2.3.1.79,2.5.1.54,4.2.1.51,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004961 456.0
SHD3_k127_5436198_1 Peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.000000000000000000000000000000000000001138 153.0
SHD3_k127_5436198_2 protein kinase activity - - - 0.00000000000000000000001523 103.0
SHD3_k127_5436198_3 Protein of unknown function (DUF533) K11962 - - 0.00000000000000000009145 96.0
SHD3_k127_5436198_4 Forkhead associated domain - - - 0.000000000000000002269 89.0
SHD3_k127_5458890_0 PFAM Cys Met metabolism pyridoxal-phosphate-dependent protein K01740 - 2.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 546.0
SHD3_k127_5458890_1 cysteine synthase A K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 481.0
SHD3_k127_5458890_2 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000046 251.0
SHD3_k127_5458890_3 Peptidoglycan-binding domain 1 protein K01448,K02395,K17733 - 3.5.1.28 0.000000008005 67.0
SHD3_k127_546566_0 AAA ATPase domain - - - 0.0 1889.0
SHD3_k127_546566_1 Histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 422.0
SHD3_k127_546566_2 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002683 321.0
SHD3_k127_546566_3 Belongs to the peptidase S1B family - - - 0.0000000000000000000000001463 113.0
SHD3_k127_546566_4 Las17-binding protein actin regulator - - - 0.00000000000000000000005045 110.0
SHD3_k127_5466015_0 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 1.126e-307 970.0
SHD3_k127_5466015_1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K03802 - 6.3.2.29,6.3.2.30 2.393e-255 815.0
SHD3_k127_5466015_2 ABC transporter transmembrane region K06147 - - 1.073e-244 788.0
SHD3_k127_5466015_3 Methyltransferase domain - - - 8.018e-202 636.0
SHD3_k127_5466015_4 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001384 261.0
SHD3_k127_5473283_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 337.0
SHD3_k127_5473283_1 guanyl-nucleotide exchange factor activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000002966 250.0
SHD3_k127_5473283_2 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000000000000000000000001864 125.0
SHD3_k127_5473283_3 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000000009759 100.0
SHD3_k127_5473283_4 Galactose oxidase, central domain - - - 0.00000000003123 74.0
SHD3_k127_5484599_0 protein conserved in bacteria - - - 0.00000000000000000000001976 112.0
SHD3_k127_5484599_1 Glycosyl hydrolase family 12 - - - 0.0006809 48.0
SHD3_k127_5484706_0 Beta-xylanase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003265 267.0
SHD3_k127_5484706_2 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.00000000000001733 78.0
SHD3_k127_5493223_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 8.818e-227 722.0
SHD3_k127_5493223_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000000004018 223.0
SHD3_k127_5493223_2 Preprotein translocase subunit K03210 - - 0.000000000000009766 79.0
SHD3_k127_5501319_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 2.365e-275 880.0
SHD3_k127_5501319_1 Peptidase family M50 K11749 - - 1.416e-211 670.0
SHD3_k127_5501319_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 333.0
SHD3_k127_5501319_3 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005786 319.0
SHD3_k127_5501319_4 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007657 288.0
SHD3_k127_5501319_5 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000003729 222.0
SHD3_k127_5501319_6 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - 0.000000000000000000000000000000000000000000421 174.0
SHD3_k127_5501319_7 AAA ATPase domain - - - 0.000000000000000000000000000000000000004057 148.0
SHD3_k127_5501319_8 Aldehyde dehydrogenase family K00129 - 1.2.1.5 0.00001304 49.0
SHD3_k127_5513817_0 Right handed beta helix region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 439.0
SHD3_k127_5513817_1 chondroitin AC lyase activity K21000 - - 0.000000000000000000000000000000000000000000000000000000000000002406 230.0
SHD3_k127_5528911_0 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000007469 242.0
SHD3_k127_5528911_1 - - - - 0.0000000000007618 75.0
SHD3_k127_5548255_0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000002889 225.0
SHD3_k127_5548255_1 - - - - 0.00000000000000000000000000000000000000000000000000000004481 215.0
SHD3_k127_5548384_0 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 1.819e-232 736.0
SHD3_k127_5548384_1 Rod shape-determining protein K03569 - - 3.404e-205 640.0
SHD3_k127_5548384_10 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - - - 0.00000000000000000000000000000000000000000000000000000000001064 218.0
SHD3_k127_5548384_12 - - - - 0.000000000000000000000000000001079 126.0
SHD3_k127_5548384_13 - - - - 0.000000000000000000000000002898 118.0
SHD3_k127_5548384_2 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 468.0
SHD3_k127_5548384_3 Belongs to the SEDS family K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 417.0
SHD3_k127_5548384_4 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 332.0
SHD3_k127_5548384_5 Belongs to the pseudouridine synthase RsuA family K06178,K06182 - 5.4.99.21,5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 293.0
SHD3_k127_5548384_6 serine-type peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007629 287.0
SHD3_k127_5548384_7 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001392 253.0
SHD3_k127_5548384_8 PFAM RNP-1 like RNA-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000002162 239.0
SHD3_k127_5548384_9 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000004698 237.0
SHD3_k127_5551160_0 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 527.0
SHD3_k127_5551160_1 PFAM glycoside hydrolase family 62 K22350 - 1.16.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 404.0
SHD3_k127_5551160_10 Glycosyl hydrolase family 12 - - - 0.00000001023 66.0
SHD3_k127_5551160_11 ADP-ribosylglycohydrolase - - - 0.000009171 58.0
SHD3_k127_5551160_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000635 378.0
SHD3_k127_5551160_3 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000001722 238.0
SHD3_k127_5551160_4 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000002184 127.0
SHD3_k127_5551160_5 succinate dehydrogenase - - - 0.0000000000000000000000000001771 123.0
SHD3_k127_5551160_6 - - - - 0.00000000000000000000264 106.0
SHD3_k127_5551160_7 4Fe-4S ferredoxin, iron-sulfur binding family protein - - - 0.00000000001935 68.0
SHD3_k127_5551160_8 - - - - 0.00000000003637 69.0
SHD3_k127_5551160_9 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0000000003832 69.0
SHD3_k127_5556798_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005602 509.0
SHD3_k127_5556798_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005384 487.0
SHD3_k127_5556798_2 Protein of unknown function (DUF2961) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002065 345.0
SHD3_k127_5556798_3 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000001391 246.0
SHD3_k127_5556798_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000002349 176.0
SHD3_k127_5556798_5 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000001391 138.0
SHD3_k127_5559315_0 O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006458 599.0
SHD3_k127_5559315_1 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000473 421.0
SHD3_k127_5559315_10 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K04794 - 3.1.1.29 0.0000000000000000000008906 100.0
SHD3_k127_5559315_11 Peptidase M16C associated K06972 - - 0.00000000000000009911 87.0
SHD3_k127_5559315_13 - K22017 GO:0001894,GO:0002218,GO:0002220,GO:0002223,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003008,GO:0003674,GO:0005102,GO:0005176,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005796,GO:0005886,GO:0005887,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007586,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010669,GO:0012505,GO:0016020,GO:0016021,GO:0016266,GO:0019538,GO:0022600,GO:0023052,GO:0030197,GO:0030277,GO:0031012,GO:0031224,GO:0031226,GO:0031347,GO:0031349,GO:0031974,GO:0032501,GO:0034645,GO:0036211,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0048871,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0071704,GO:0071944,GO:0080134,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000001379 89.0
SHD3_k127_5559315_14 - - - - 0.0000000000001961 84.0
SHD3_k127_5559315_15 COG0607 Rhodanese-related sulfurtransferase K03151 - 2.8.1.4 0.00000000001545 71.0
SHD3_k127_5559315_16 Lamin Tail Domain - - - 0.0000025 62.0
SHD3_k127_5559315_18 Lamin Tail Domain - - - 0.00001904 58.0
SHD3_k127_5559315_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006029 321.0
SHD3_k127_5559315_20 Thrombospondin type 3 repeat - - - 0.0002618 55.0
SHD3_k127_5559315_3 Right handed beta helix region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 321.0
SHD3_k127_5559315_4 Right handed beta helix region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 320.0
SHD3_k127_5559315_5 AAA domain K06873 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000261 274.0
SHD3_k127_5559315_6 Domain of unknown function (DUF4423) - - - 0.0000000000000000000000000000000000000000000000000001047 198.0
SHD3_k127_5559315_7 Kelch motif - - - 0.0000000000000000000000000000000000001887 162.0
SHD3_k127_5559315_8 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000375 142.0
SHD3_k127_5559315_9 Belongs to the glycosyl hydrolase family 6 - - - 0.00000000000000000000006314 115.0
SHD3_k127_5560942_0 DEAD DEAH box helicase - - - 0.0 1116.0
SHD3_k127_5560942_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 291.0
SHD3_k127_5560942_2 UPF0056 inner membrane protein K05595 - - 0.0000000000000000000000000000000000000000000000001087 186.0
SHD3_k127_5560942_3 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000004435 125.0
SHD3_k127_5560942_4 oxidoreductase activity K07114 - - 0.00000000000000271 89.0
SHD3_k127_5570493_0 Endoglucanase K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 341.0
SHD3_k127_5570493_1 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000000000000000000000000000000000000000000000029 203.0
SHD3_k127_5570493_2 Glycosyl hydrolases family 8 - - - 0.000000000000000000000000000000000000000004347 177.0
SHD3_k127_5570493_3 - - - - 0.000000000000000000000000000000001047 146.0
SHD3_k127_5570493_4 Histidine kinase - - - 0.00000000000000000000000000000001254 129.0
SHD3_k127_5570493_5 Belongs to the 5'-nucleotidase family K01119 - 3.1.3.6,3.1.4.16 0.00000000000000000000000000000008247 131.0
SHD3_k127_5570493_6 Phosphotransferase enzyme family - - - 0.0000003365 59.0
SHD3_k127_5570493_7 - - - - 0.000004534 59.0
SHD3_k127_557106_0 5' nucleotidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 554.0
SHD3_k127_557106_1 COG2189 Adenine specific DNA methylase Mod - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006724 314.0
SHD3_k127_557106_2 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 318.0
SHD3_k127_557106_3 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004607 297.0
SHD3_k127_557106_4 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000744 173.0
SHD3_k127_557106_5 cell envelope organization K05807,K08309 - - 0.0000000000000000000000000000000000000000007545 173.0
SHD3_k127_557106_6 protein kinase activity - - - 0.00000000000000000000000000000001468 147.0
SHD3_k127_557106_7 peptidyl-tyrosine sulfation - - - 0.00000000001014 76.0
SHD3_k127_557106_8 Heat shock 70 kDa protein K04043 - - 0.00003237 53.0
SHD3_k127_5600549_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007586 434.0
SHD3_k127_5600549_2 - - - - 0.00000000000000000000000000000000000000000165 166.0
SHD3_k127_5600549_3 Forkhead associated domain - - - 0.0000000000000000000000000000000000003209 149.0
SHD3_k127_5600549_4 - - - - 0.00000006147 61.0
SHD3_k127_5600549_5 Integral membrane protein CcmA involved in cell shape determination - - - 0.0001663 49.0
SHD3_k127_5602371_0 PfkB domain protein K00874 - 2.7.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 589.0
SHD3_k127_5602371_1 glucuronate isomerase activity K01812 GO:0005975,GO:0005996,GO:0006063,GO:0006064,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0019585,GO:0019586,GO:0019698,GO:0019752,GO:0032787,GO:0042839,GO:0042840,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046365,GO:0046395,GO:0046396,GO:0046397,GO:0071704,GO:0072329,GO:1901575 5.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 591.0
SHD3_k127_5602371_10 - - - - 0.000000000001469 74.0
SHD3_k127_5602371_11 Parallel beta-helix repeats - - - 0.00000000116 70.0
SHD3_k127_5602371_12 Right handed beta helix region - - - 0.0000002983 61.0
SHD3_k127_5602371_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 355.0
SHD3_k127_5602371_3 tagaturonate epimerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000229 325.0
SHD3_k127_5602371_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 310.0
SHD3_k127_5602371_5 DnaJ molecular chaperone homology domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009835 287.0
SHD3_k127_5602371_6 oxidoreductase activity K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002828 273.0
SHD3_k127_5602371_7 CBD_II K01728 - 4.2.2.2 0.00000000000000000000000000000000000000000000000000000000000000002302 238.0
SHD3_k127_5602371_8 regulation of DNA-templated transcription, elongation - - - 0.00000000000000000000000000000000000000000000000000000000000002146 231.0
SHD3_k127_5602371_9 ABC-type sugar transport system periplasmic component K02058,K10439 - - 0.000000000000000000000000000000000000000000000000005267 192.0
SHD3_k127_5611687_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003542 552.0
SHD3_k127_5611687_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003717 482.0
SHD3_k127_5611687_10 - - - - 0.000000000000000005397 96.0
SHD3_k127_5611687_2 two-component system, chemotaxis family, sensor kinase CheA with response regulator domain K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007647 402.0
SHD3_k127_5611687_3 Belongs to the radical SAM superfamily. RlmN family K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004195 341.0
SHD3_k127_5611687_4 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000003699 237.0
SHD3_k127_5611687_5 Endonuclease V K05982 - 3.1.21.7 0.00000000000000000000000000000000000000000000000000000000009902 220.0
SHD3_k127_5611687_6 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group K01951 - 6.3.5.2 0.0000000000000000000000000000000000000000000000005155 185.0
SHD3_k127_5611687_7 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000006868 173.0
SHD3_k127_5611687_8 SERine Proteinase INhibitors K13963 - - 0.0000000000000000000003296 99.0
SHD3_k127_5611687_9 Belongs to the peptidase S41A family K03797 GO:0003674,GO:0003824,GO:0004175,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0009653,GO:0009987,GO:0016787,GO:0019538,GO:0023052,GO:0030154,GO:0030288,GO:0030313,GO:0030435,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043603,GO:0043900,GO:0043902,GO:0043934,GO:0044237,GO:0044238,GO:0044464,GO:0046983,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0140096,GO:1900190,GO:1900192,GO:1901564 3.4.21.102 0.0000000000000000001281 93.0
SHD3_k127_5621165_0 UPF0313 protein - - - 3.677e-225 714.0
SHD3_k127_5621165_1 Cellulase N-terminal ig-like domain K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004713 602.0
SHD3_k127_5621165_2 xyloglucan:xyloglucosyl transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000001252 237.0
SHD3_k127_5621165_3 Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - 0.000000000000000000000000000000000000000000000001316 192.0
SHD3_k127_562138_0 Berberine and berberine like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 287.0
SHD3_k127_562138_1 RmlD substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000001054 218.0
SHD3_k127_562138_2 dockerin type K15924 - 3.2.1.136 0.00000000000000000000000000000000000000000000000605 191.0
SHD3_k127_562138_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000003667 103.0
SHD3_k127_562138_4 Belongs to the glycosyl hydrolase 3 family K01207,K05349 - 3.2.1.21,3.2.1.52 0.00000000000000000000005491 105.0
SHD3_k127_562138_5 Fungal family of unknown function (DUF1776) - - - 0.00000000000000000006084 100.0
SHD3_k127_5625410_0 Pectinesterase K01051 - 3.1.1.11 0.000000000000000000000000000000000879 151.0
SHD3_k127_5625410_2 Tetratricopeptide repeat - - - 0.00000000000000000000000006358 112.0
SHD3_k127_5625410_4 - - - - 0.000001165 58.0
SHD3_k127_5625410_5 Belongs to the 'phage' integrase family - - - 0.00006222 50.0
SHD3_k127_5630254_0 Tetratricopeptide repeat - - - 6.275e-237 764.0
SHD3_k127_5630254_1 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 391.0
SHD3_k127_5630254_10 Extensin-like protein C-terminus - - - 0.0000000000000000000000001096 119.0
SHD3_k127_5630254_11 Bifunctional nuclease K08999 - - 0.00000000000000000000007101 107.0
SHD3_k127_5630254_12 Domain of unknown function (DUF362) - - - 0.0000000000000000002194 102.0
SHD3_k127_5630254_13 - - - - 0.000000000000000002712 92.0
SHD3_k127_5630254_14 Subtilase family - - - 0.00000000007436 72.0
SHD3_k127_5630254_15 protein import - - - 0.000000006744 64.0
SHD3_k127_5630254_16 WD-40 repeat - - - 0.0000008859 63.0
SHD3_k127_5630254_2 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 328.0
SHD3_k127_5630254_3 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001262 284.0
SHD3_k127_5630254_4 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000000003829 243.0
SHD3_k127_5630254_5 FKBP-type peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000001098 199.0
SHD3_k127_5630254_6 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000005376 203.0
SHD3_k127_5630254_7 NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000003346 175.0
SHD3_k127_5630254_8 Serine hydrolase involved in the detoxification of formaldehyde - - - 0.00000000000000000000000000000000000000009946 163.0
SHD3_k127_5630254_9 PA14 domain - - - 0.0000000000000000000000000000000006728 143.0
SHD3_k127_5632033_1 Lipoprotein amino terminal region - - - 0.0000000000000000000000000000000000000003652 169.0
SHD3_k127_5632033_2 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000006639 144.0
SHD3_k127_5632033_4 RDD family - - - 0.000000000000000000000005166 109.0
SHD3_k127_5637269_0 Type II restriction enzyme, methylase subunits - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 625.0
SHD3_k127_5637269_1 FAD dependent oxidoreductase K15736 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 514.0
SHD3_k127_5637269_10 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000003155 157.0
SHD3_k127_5637269_11 EAL domain - - - 0.000000000000000000000000000001012 136.0
SHD3_k127_5637269_12 - - - - 0.00000009483 63.0
SHD3_k127_5637269_13 PA14 domain - - - 0.00000536 54.0
SHD3_k127_5637269_2 Belongs to the N(4) N(6)-methyltransferase family K00571 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007255 503.0
SHD3_k127_5637269_3 ROK family K00847 - 2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003166 376.0
SHD3_k127_5637269_4 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004359 308.0
SHD3_k127_5637269_5 PDGLE domain K02007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002532 278.0
SHD3_k127_5637269_6 part of an ABC transporter complex. Responsible for energy coupling to the transport system K02006,K16787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006427 278.0
SHD3_k127_5637269_7 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000759 220.0
SHD3_k127_5637269_8 TIGRFAM cobalt ABC transporter, inner membrane subunit CbiQ K02008 - - 0.00000000000000000000000000000000000000000000000000000002193 211.0
SHD3_k127_5637269_9 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000000000000000003993 188.0
SHD3_k127_5639570_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 7.113e-274 879.0
SHD3_k127_5639570_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000006814 265.0
SHD3_k127_5639570_2 serine-type endopeptidase activity - - - 0.000000000000000000002507 98.0
SHD3_k127_5639570_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000003482 61.0
SHD3_k127_5645559_0 COG0419 ATPase involved in DNA repair K03546 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 331.0
SHD3_k127_5645559_1 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005285 254.0
SHD3_k127_5645559_2 SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity - - - 0.0000000000002342 79.0
SHD3_k127_5645559_3 Tetratricopeptide repeat - - - 0.000833 52.0
SHD3_k127_5650470_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001688 494.0
SHD3_k127_5650470_1 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004701 317.0
SHD3_k127_5650470_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000009481 171.0
SHD3_k127_5650470_3 beta-lactamase activity K07126,K19292 - - 0.000000000000000000000000001201 125.0
SHD3_k127_565145_0 SMART Elongator protein 3 MiaB NifB - - - 5.845e-281 891.0
SHD3_k127_565145_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 458.0
SHD3_k127_565145_2 - - - - 0.00000000000000000000000000001903 128.0
SHD3_k127_5651572_0 ErfK ybiS ycfS ynhG family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000744 556.0
SHD3_k127_5651572_1 Aldo/keto reductase family K05275 - 1.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 484.0
SHD3_k127_5651572_10 Belongs to the UPF0109 family K06960 - - 0.0000000000000000000001715 100.0
SHD3_k127_5651572_11 iron-sulfur cluster assembly K07126,K13819 - - 0.0000000000000000000002743 99.0
SHD3_k127_5651572_12 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000402 101.0
SHD3_k127_5651572_13 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000001219 96.0
SHD3_k127_5651572_14 PFAM blue (type 1) copper domain protein K00368 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.7.2.1 0.00000000000000001036 91.0
SHD3_k127_5651572_15 Sterol carrier protein - - - 0.0000000000000009257 81.0
SHD3_k127_5651572_18 zinc-ribbon domain - - - 0.00000000001099 78.0
SHD3_k127_5651572_19 Cytochrome C oxidase, cbb3-type, subunit III K12263 - - 0.00000000003726 68.0
SHD3_k127_5651572_2 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 456.0
SHD3_k127_5651572_20 Prephenate dehydratase K14170 GO:0003674,GO:0003824,GO:0004664,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0019438,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223 4.2.1.51,5.4.99.5 0.0000000004807 68.0
SHD3_k127_5651572_3 two component, sigma54 specific, transcriptional regulator, Fis family K07713,K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859 459.0
SHD3_k127_5651572_4 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009308 425.0
SHD3_k127_5651572_5 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 368.0
SHD3_k127_5651572_6 Fic/DOC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006581 366.0
SHD3_k127_5651572_7 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000000000000003084 163.0
SHD3_k127_5651572_8 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000000000000000006534 167.0
SHD3_k127_5651942_0 PFAM Glycosyl transferase family 2 - - - 3.371e-227 713.0
SHD3_k127_5651942_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005228 334.0
SHD3_k127_5651942_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004601 260.0
SHD3_k127_5651942_3 domain, Protein - - - 0.00000000000000000000000000000000000000007985 164.0
SHD3_k127_5651942_4 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000000000000000004486 111.0
SHD3_k127_5651942_6 carbohydrate binding - - - 0.0001406 54.0
SHD3_k127_565284_0 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003396 555.0
SHD3_k127_565284_1 Aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003859 520.0
SHD3_k127_565284_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 411.0
SHD3_k127_565284_3 Anion-transporting ATPase K01551 - 3.6.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000007375 274.0
SHD3_k127_5669787_0 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004795 508.0
SHD3_k127_5669787_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 376.0
SHD3_k127_5669787_2 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 316.0
SHD3_k127_5669787_3 Zn-finger in ubiquitin-hydrolases and other protein - - - 0.000000000000000000000000000000000000009026 147.0
SHD3_k127_5682518_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K13924 - 2.1.1.80,3.1.1.61 2.575e-231 777.0
SHD3_k127_5704830_0 Glycosyl hydrolases family 8 - - - 0.00000000000000000000000000000000000000000000000001218 204.0
SHD3_k127_5704830_1 Belongs to the glycosyl hydrolase 8 (cellulase D) family K00694,K15531,K20542 - 2.4.1.12,3.2.1.156,3.2.1.4 0.0006611 48.0
SHD3_k127_5709510_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 9.435e-265 835.0
SHD3_k127_5709510_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 544.0
SHD3_k127_5709510_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000007174 140.0
SHD3_k127_5709510_3 transcriptional regulator - - - 0.000002427 55.0
SHD3_k127_5709901_0 7TM receptor with intracellular HD hydrolase K07037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 608.0
SHD3_k127_5709901_1 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004553 416.0
SHD3_k127_5709901_10 Domain of unknown function (DUF4160) - - - 0.00000000000000000000000001695 118.0
SHD3_k127_5709901_11 Protein of unknown function (DUF2442) - - - 0.0000000000000000006543 89.0
SHD3_k127_5709901_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 300.0
SHD3_k127_5709901_3 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001504 286.0
SHD3_k127_5709901_4 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.000000000000000000000000000000000000000000000000000000000000000000000000001353 265.0
SHD3_k127_5709901_5 YbbR-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000005379 239.0
SHD3_k127_5709901_6 Esterase PHB depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000009963 221.0
SHD3_k127_5709901_7 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000002157 227.0
SHD3_k127_5709901_8 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000003295 183.0
SHD3_k127_5709901_9 Histidine kinase - - - 0.000000000000000000000000000000000002613 154.0
SHD3_k127_5710865_0 Polysulphide reductase, NrfD - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 475.0
SHD3_k127_5710865_1 Beta-galactosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003213 309.0
SHD3_k127_5710865_2 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 302.0
SHD3_k127_5710865_3 - - - - 0.0000000002054 70.0
SHD3_k127_580861_0 MMPL family K07003 - - 0.0 1045.0
SHD3_k127_580861_1 Amylo-alpha-1,6-glucosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 592.0
SHD3_k127_580861_10 trans-aconitate 2-methyltransferase activity K02169 - 2.1.1.197 0.00000000000000000000000000000000000000000006811 170.0
SHD3_k127_580861_11 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000000000000000000002147 160.0
SHD3_k127_580861_12 - - - - 0.00000000000000000000000006177 118.0
SHD3_k127_580861_2 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004022 406.0
SHD3_k127_580861_3 Fumarate reductase flavoprotein C-term K00239,K00244 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 392.0
SHD3_k127_580861_4 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005694 308.0
SHD3_k127_580861_5 2Fe-2S iron-sulfur cluster binding domain K00240,K00245 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000002766 247.0
SHD3_k127_580861_6 F COG0518 GMP synthase - Glutamine amidotransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000004156 239.0
SHD3_k127_580861_7 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 - - 0.000000000000000000000000000000000000000000000000000006808 199.0
SHD3_k127_580861_9 PIN domain - - - 0.00000000000000000000000000000000000000000000009751 171.0
SHD3_k127_583662_0 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002081 286.0
SHD3_k127_583662_1 Belongs to the glycosyl hydrolase 30 family - - - 0.000000000000000000000000000000000000000000000000000000000000009841 231.0
SHD3_k127_585655_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K18331 - 1.12.1.3 0.0 1031.0
SHD3_k127_585655_1 Cellulase (glycosyl hydrolase family 5) K01218 - 3.2.1.78 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 311.0
SHD3_k127_585655_2 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.00000000000000000000000000000000000000000000000000309 189.0
SHD3_k127_585655_3 Thioredoxin-like [2Fe-2S] ferredoxin K00334,K17999 - 1.12.1.4,1.6.5.3 0.00000000000000000000000000000000000000000000000001338 184.0
SHD3_k127_588957_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 1.492e-238 766.0
SHD3_k127_588957_1 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002921 430.0
SHD3_k127_588957_10 - - - - 0.0002462 50.0
SHD3_k127_588957_2 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008977 389.0
SHD3_k127_588957_3 Glycosyl hydrolases family 43 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007025 269.0
SHD3_k127_588957_4 Zinc-dependent metalloprotease - - - 0.00000000000000000000000000000000000000000000000000000000000000007711 233.0
SHD3_k127_588957_5 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000002691 196.0
SHD3_k127_588957_6 Beta-L-arabinofuranosidase, GH127 - - - 0.0000000000000000000000000002394 133.0
SHD3_k127_588957_7 - - - - 0.00000000000000000000000004059 115.0
SHD3_k127_588957_9 Related glycosyltransferases of PMT family - - - 0.0000000000000005723 92.0
SHD3_k127_601894_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004515 287.0
SHD3_k127_601894_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000001639 246.0
SHD3_k127_601894_2 Putative zinc-finger - - - 0.000000000000000000000000000000000002372 151.0
SHD3_k127_606558_0 ATP-dependent peptidase activity K01338 - 3.4.21.53 0.0 1012.0
SHD3_k127_606558_1 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007429 285.0
SHD3_k127_606558_10 Putative peptidase family - - - 0.0000000000000000000000000001638 132.0
SHD3_k127_606558_11 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.0000000000000000000003584 100.0
SHD3_k127_606558_13 peptidyl-tyrosine sulfation - - - 0.00003967 55.0
SHD3_k127_606558_14 SnoaL-like domain - - - 0.0003359 49.0
SHD3_k127_606558_2 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000003425 254.0
SHD3_k127_606558_3 Neutral/alkaline non-lysosomal ceramidase, N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000002977 237.0
SHD3_k127_606558_4 - - - - 0.0000000000000000000000000000000000000000000000000000006482 208.0
SHD3_k127_606558_5 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.00000000000000000000000000000000000000000000000000001117 203.0
SHD3_k127_606558_6 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000008388 205.0
SHD3_k127_606558_7 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000008061 182.0
SHD3_k127_606558_8 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000001322 166.0
SHD3_k127_606558_9 DNA-binding regulatory protein K03088 - - 0.00000000000000000000000000000006931 136.0
SHD3_k127_616378_0 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000003648 193.0
SHD3_k127_616378_1 CAAX amino terminal protease family - - - 0.0000000000000000000000000000000000000000006527 173.0
SHD3_k127_616378_2 Integrase - - - 0.000000000000000000000000000000000002761 146.0
SHD3_k127_616378_3 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000006223 124.0
SHD3_k127_616378_4 Membrane - - - 0.00000006569 55.0
SHD3_k127_616378_5 polysaccharide deacetylase K22278 - 3.5.1.104 0.000001355 54.0
SHD3_k127_616726_0 Involved in the TonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008213 325.0
SHD3_k127_616726_1 MotA/TolQ/ExbB proton channel family K03562 - - 0.0000000000000000000000000000000000000000000000000000004213 201.0
SHD3_k127_616726_2 Biopolymer transport protein ExbD/TolR K03560 - - 0.00000000000000000000000000000000000000000000006142 175.0
SHD3_k127_616726_3 - - - - 0.000000000000000000000000000000000000006356 149.0
SHD3_k127_616726_5 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000001345 149.0
SHD3_k127_616726_6 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000001066 122.0
SHD3_k127_617524_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 448.0
SHD3_k127_617524_1 Ammonium Transporter Family K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001054 267.0
SHD3_k127_617524_10 - - - - 0.000006948 58.0
SHD3_k127_617524_11 - - - - 0.0008371 48.0
SHD3_k127_617524_2 AAA ATPase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004539 267.0
SHD3_k127_617524_3 DJ-1/PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000000000000003839 251.0
SHD3_k127_617524_4 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000006513 228.0
SHD3_k127_617524_5 Domain of unknown function (DUF4276) - - - 0.00000000000000000000000000000000000000000000000000007362 196.0
SHD3_k127_617524_6 COG3509 Poly(3-hydroxybutyrate) depolymerase K03932 - - 0.000000000000000000000000000000000003897 149.0
SHD3_k127_617524_7 oxidoreductase activity K07114 - - 0.000000000000000000000000000001975 135.0
SHD3_k127_619098_0 Histidine Phosphotransfer domain K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 598.0
SHD3_k127_619098_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 515.0
SHD3_k127_619098_10 Two component signalling adaptor domain K03408 - - 0.00000000003041 70.0
SHD3_k127_619098_11 LGFP repeat - - - 0.00000002262 68.0
SHD3_k127_619098_2 Methyltransferase, chemotaxis proteins K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009002 466.0
SHD3_k127_619098_3 PFAM chemotaxis sensory transducer - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027 455.0
SHD3_k127_619098_4 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 394.0
SHD3_k127_619098_5 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008725 268.0
SHD3_k127_619098_6 Predicted membrane protein (DUF2142) - - - 0.000000000000000000000000000001986 137.0
SHD3_k127_619098_7 Two component signalling adaptor domain - - - 0.00000000000000000000000001085 114.0
SHD3_k127_619098_8 protein trimerization - - - 0.00000000000000000000000001151 123.0
SHD3_k127_619098_9 amine dehydrogenase activity - - - 0.000000000003256 80.0
SHD3_k127_61926_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 2.168e-260 812.0
SHD3_k127_61926_1 Thioredoxin - - - 5.855e-230 730.0
SHD3_k127_61926_10 Periplasmic binding protein LacI transcriptional regulator K10439 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009444 371.0
SHD3_k127_61926_11 Belongs to the binding-protein-dependent transport system permease family K02057,K10440 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008354 363.0
SHD3_k127_61926_12 EAL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009962 316.0
SHD3_k127_61926_13 - - - - 0.00000000000000000000000000000000000000000000000000000000000002832 237.0
SHD3_k127_61926_14 protein trimerization - - - 0.00000000000000000000000000000000000000000000000000004929 199.0
SHD3_k127_61926_16 Conserved protein of DIM6 NTAB family - - - 0.000000000000000000000000000000008005 135.0
SHD3_k127_61926_17 phosphatidate phosphatase activity K19302 - 3.6.1.27 0.000000000000000000000000001458 124.0
SHD3_k127_61926_18 Transcription factor zinc-finger - - - 0.000000000000000000000002836 111.0
SHD3_k127_61926_19 Domain of unknown function (DUF4272) - - - 0.0000000000000000000005874 104.0
SHD3_k127_61926_2 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 7.557e-203 665.0
SHD3_k127_61926_21 import. Responsible for energy coupling to the transport system K02056,K10441,K10562 - 3.6.3.17 0.000000000000008187 79.0
SHD3_k127_61926_22 - - - - 0.0000000000009652 72.0
SHD3_k127_61926_3 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004546 545.0
SHD3_k127_61926_4 Alpha amylase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003241 521.0
SHD3_k127_61926_5 ATPases associated with a variety of cellular activities K10441 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 467.0
SHD3_k127_61926_6 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 453.0
SHD3_k127_61926_7 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007355 445.0
SHD3_k127_61926_8 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 386.0
SHD3_k127_61926_9 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 368.0
SHD3_k127_622122_0 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003405 394.0
SHD3_k127_622122_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 351.0
SHD3_k127_622122_2 4Fe-4S ferredoxin iron-sulfur binding domain protein K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 339.0
SHD3_k127_622122_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 336.0
SHD3_k127_622888_1 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 2.165e-211 664.0
SHD3_k127_622888_2 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005727 268.0
SHD3_k127_622888_3 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000001258 263.0
SHD3_k127_622888_4 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000001001 211.0
SHD3_k127_622888_5 Anion-transporting ATPase - - - 0.00000000000000000000000000000000000001216 164.0
SHD3_k127_622888_6 Anion-transporting ATPase K01551 - 3.6.3.16 0.0000000000000008279 88.0
SHD3_k127_633146_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 439.0
SHD3_k127_633146_1 Family membership K08884 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 311.0
SHD3_k127_633146_2 ATPases associated with a variety of cellular activities K09817 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003728 246.0
SHD3_k127_633146_3 ABC 3 transport family K09816 - - 0.000000000000000000000000000000000000000000000000000000000000003219 237.0
SHD3_k127_633146_4 PFAM periplasmic solute binding protein K09815 - - 0.00000000000000000000000000000000000000000000000000000004335 206.0
SHD3_k127_633146_5 peptidyl-tyrosine sulfation - - - 0.00000000000000000004007 102.0
SHD3_k127_633146_6 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852,K00856,K10710,K22026 - 2.7.1.15,2.7.1.20,2.7.1.213,2.7.1.218,2.7.1.73 0.0000000000000000685 86.0
SHD3_k127_635325_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 2.912e-229 721.0
SHD3_k127_635325_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006746 424.0
SHD3_k127_635325_2 Leucine carboxyl methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 402.0
SHD3_k127_635325_3 enterobactin catabolic process K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000108 278.0
SHD3_k127_635325_4 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000152 252.0
SHD3_k127_635325_5 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000007879 229.0
SHD3_k127_635325_7 sodium ABC transporter, permease K09696 - - 0.0000000000001997 81.0
SHD3_k127_635325_8 Parallel beta-helix repeats - - - 0.000000001874 68.0
SHD3_k127_640475_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 588.0
SHD3_k127_640475_1 Transcriptional regulator K03717 - - 0.00000000000000000000000000000000000000000000000000000000000008043 218.0
SHD3_k127_640475_2 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000005034 140.0
SHD3_k127_640475_3 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000001277 100.0
SHD3_k127_641927_0 Pyridine nucleotide-disulphide oxidoreductase K00362 - 1.7.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007809 354.0
SHD3_k127_641927_1 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 343.0
SHD3_k127_641927_2 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001565 268.0
SHD3_k127_641927_3 Sulfatase - - - 0.000000000000000000000000000000000000000000000005057 193.0
SHD3_k127_641927_4 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000005737 79.0
SHD3_k127_641927_5 DNA-binding domain in plant proteins such as APETALA2 and EREBPs K09286 - - 0.0007856 50.0
SHD3_k127_646085_1 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002402 453.0
SHD3_k127_646085_2 Kelch motif - - - 0.0000000000000000000000000000000000000000000000000000000001148 230.0
SHD3_k127_646085_4 Sigma-70 region 2 K03088 - - 0.00005027 53.0
SHD3_k127_646085_5 Kelch motif - - - 0.0003084 50.0
SHD3_k127_648531_0 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 5.868e-202 644.0
SHD3_k127_648531_1 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 456.0
SHD3_k127_648531_2 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004818 340.0
SHD3_k127_648531_3 photoreceptor activity - - - 0.00000000000000000000000000002046 134.0
SHD3_k127_648531_5 peptidyl-tyrosine sulfation - - - 0.00000002487 66.0
SHD3_k127_648531_7 S-layer homology domain - - - 0.00002987 57.0
SHD3_k127_67592_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003647 534.0
SHD3_k127_67592_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 526.0
SHD3_k127_67592_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 301.0
SHD3_k127_67592_3 alpha beta - - - 0.0000000000000000000000000000000000000000000000000000000000002395 239.0
SHD3_k127_67592_4 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000004173 218.0
SHD3_k127_67592_5 serine threonine protein kinase K15923 - 3.2.1.51 0.000000000000000000000000000000009415 145.0
SHD3_k127_67592_6 cheY-homologous receiver domain - - - 0.0000000000000000000000000009157 118.0
SHD3_k127_67592_7 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000806 95.0
SHD3_k127_67592_8 PFAM CBS domain containing protein K07168 - - 0.0000000000003864 80.0
SHD3_k127_67592_9 - - - - 0.0006452 52.0
SHD3_k127_683944_0 Belongs to the glycosyl hydrolase 2 family K01195 - 3.2.1.31 1.025e-220 702.0
SHD3_k127_683944_1 Transcriptional regulator K03655,K10439,K11708 - 3.6.4.12 8.555e-205 653.0
SHD3_k127_683944_2 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 582.0
SHD3_k127_683944_3 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 430.0
SHD3_k127_683944_4 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 336.0
SHD3_k127_683944_5 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002724 266.0
SHD3_k127_683944_6 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000787 233.0
SHD3_k127_683944_7 HAMP domain - - - 0.00000000000000000000925 104.0
SHD3_k127_683944_8 - - - - 0.0000001309 64.0
SHD3_k127_706229_0 PFAM Integrase catalytic region - - - 6.454e-206 651.0
SHD3_k127_706229_1 PFAM IstB domain protein ATP-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 327.0
SHD3_k127_718433_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 1.47e-217 685.0
SHD3_k127_718433_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007419 567.0
SHD3_k127_718433_10 Sigma 54 modulation protein / S30EA ribosomal protein K05808 - - 0.000000000000000000001366 104.0
SHD3_k127_718433_11 PTS HPr component phosphorylation site K11189 - - 0.000000000000000000676 98.0
SHD3_k127_718433_12 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 - - 0.0000000000000006303 87.0
SHD3_k127_718433_13 Protein conserved in bacteria K09774 - - 0.000000002233 64.0
SHD3_k127_718433_2 Belongs to the glycosyl hydrolase 1 family K05350 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 535.0
SHD3_k127_718433_3 Dynamin family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 390.0
SHD3_k127_718433_4 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004372 370.0
SHD3_k127_718433_5 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171 346.0
SHD3_k127_718433_6 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 316.0
SHD3_k127_718433_7 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003671 296.0
SHD3_k127_718433_8 PFAM ABC transporter related K06861 - - 0.0000000000000000000000000000000000000000000007625 174.0
SHD3_k127_718433_9 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000001819 106.0
SHD3_k127_718545_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 537.0
SHD3_k127_718545_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 397.0
SHD3_k127_718545_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 290.0
SHD3_k127_718545_3 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005538 289.0
SHD3_k127_718545_4 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.0000000000000000000000002958 108.0
SHD3_k127_718545_5 Protein of unknown function (DUF533) K06596 - - 0.00000000000004125 76.0
SHD3_k127_718545_6 Protein of unknown function (DUF533) K06596 - - 0.0000000000001234 73.0
SHD3_k127_726612_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007586 571.0
SHD3_k127_726612_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009745 494.0
SHD3_k127_726612_2 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 387.0
SHD3_k127_726612_3 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005712 273.0
SHD3_k127_726612_4 PilZ domain - - - 0.0000000000000000000000000000000000000000000001458 170.0
SHD3_k127_73150_0 Transglutaminase-like superfamily - - - 1.618e-272 866.0
SHD3_k127_73150_1 Melibiase K07407 - 3.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 451.0
SHD3_k127_73150_2 PFAM Nitroreductase - - - 0.00000000000000000000000000000000000000000008598 167.0
SHD3_k127_734510_0 Hypothetical glycosyl hydrolase family 15 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 344.0
SHD3_k127_734510_1 Domain of unknown function (DUF296) - - - 0.0000000000000000000000000000000000000000000000000000004252 196.0
SHD3_k127_734510_2 Pyrroloquinoline quinone biosynthesis protein E - - - 0.0000000000000000000000000002541 118.0
SHD3_k127_734510_3 Parallel beta-helix repeats - - - 0.00000000000000000000000004965 123.0
SHD3_k127_734510_4 Protein of unknown function (DUF805) - - - 0.0009538 45.0
SHD3_k127_748331_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002402 580.0
SHD3_k127_748331_1 xylan catabolic process K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003847 411.0
SHD3_k127_748331_11 tail collar domain protein - - - 0.0000000000000002887 88.0
SHD3_k127_748331_2 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000982 428.0
SHD3_k127_748331_4 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000002993 236.0
SHD3_k127_748331_5 iron ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000001589 218.0
SHD3_k127_748331_6 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000001632 204.0
SHD3_k127_748331_7 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000001641 181.0
SHD3_k127_748331_8 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000508 152.0
SHD3_k127_759468_0 Vault protein inter-alpha-trypsin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 603.0
SHD3_k127_759468_1 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 570.0
SHD3_k127_759468_3 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000000000002918 206.0
SHD3_k127_759468_4 PFAM Peptidase M11 gametolysin - - - 0.000000000000000000000000000004001 137.0
SHD3_k127_759468_5 serine threonine protein kinase - - - 0.0000000000001248 84.0
SHD3_k127_759468_6 Polynucleotide kinase 3 phosphatase K08073 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009117,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010638,GO:0010835,GO:0010836,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0019205,GO:0019219,GO:0019222,GO:0019637,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032268,GO:0032269,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0042578,GO:0042769,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046403,GO:0046404,GO:0046483,GO:0046939,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0051731,GO:0051733,GO:0051734,GO:0051972,GO:0051973,GO:0055086,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0098501,GO:0098502,GO:0098503,GO:0098504,GO:0098506,GO:0098518,GO:1901360,GO:1901363,GO:1904353,GO:1904355,GO:1904356,GO:1904358,GO:2000112,GO:2000278,GO:2000573,GO:2001252 2.7.1.78,3.1.3.32 0.0000004516 59.0
SHD3_k127_76450_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000004132 112.0
SHD3_k127_76450_1 Belongs to the peptidase S8 family K03932 - - 0.0000000000000000000008058 111.0
SHD3_k127_76450_2 peptide ABC transporter substrate-binding protein K07165 - - 0.0000001095 64.0
SHD3_k127_77128_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 555.0
SHD3_k127_77128_1 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003153 505.0
SHD3_k127_77128_10 Aspartyl protease - - - 0.000001232 58.0
SHD3_k127_77128_11 Tetratricopeptide repeat - - - 0.000002772 60.0
SHD3_k127_77128_12 Predicted membrane protein (DUF2142) K17414 - - 0.00006452 55.0
SHD3_k127_77128_2 GDP-mannose 4,6 dehydratase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 446.0
SHD3_k127_77128_3 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007478 401.0
SHD3_k127_77128_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003176 281.0
SHD3_k127_77128_5 Nucleotidyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001035 276.0
SHD3_k127_77128_6 Glycosyl hydrolase family 65, C-terminal domain - - - 0.000000000000000000000000000000000000000000001491 190.0
SHD3_k127_77128_7 PAS fold - - - 0.0000000000000000008032 94.0
SHD3_k127_77128_8 - - - - 0.00000000000006766 78.0
SHD3_k127_77128_9 Methyltransferase type 12 - - - 0.00000000003168 72.0
SHD3_k127_771803_0 drug resistance transporter, EmrB QacA subfamily K03446 - - 6.432e-210 663.0
SHD3_k127_771803_1 Belongs to the aspartokinase family K12524,K12525 GO:0003674,GO:0003824,GO:0004072,GO:0004412,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.3,2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000069 557.0
SHD3_k127_771803_10 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000000000000005711 202.0
SHD3_k127_771803_11 FOG TPR repeat SEL1 subfamily K07126 GO:0003674,GO:0003824,GO:0008800,GO:0016787,GO:0016810,GO:0016812 - 0.0000000000000000000000000000000000000000000000005822 199.0
SHD3_k127_771803_12 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000005287 139.0
SHD3_k127_771803_13 - - - - 0.00000000000000000000000001202 121.0
SHD3_k127_771803_14 Putative restriction endonuclease - - - 0.0000000000000000000008156 97.0
SHD3_k127_771803_15 HEAT repeats - - - 0.0000000000000001909 93.0
SHD3_k127_771803_16 protein kinase activity - - - 0.00001866 57.0
SHD3_k127_771803_17 phosphorelay signal transduction system - - - 0.00003251 57.0
SHD3_k127_771803_18 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0001883 52.0
SHD3_k127_771803_19 - - - - 0.0002856 53.0
SHD3_k127_771803_2 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005744 528.0
SHD3_k127_771803_20 Transcriptional regulatory protein, C terminal K07665 - - 0.0006163 49.0
SHD3_k127_771803_3 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002867 469.0
SHD3_k127_771803_4 PFAM aldo keto reductase K07079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 432.0
SHD3_k127_771803_5 Serine dehydrogenase proteinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009324 407.0
SHD3_k127_771803_6 Biotin-lipoyl like K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 406.0
SHD3_k127_771803_7 Phosphate acetyl/butaryl transferase K00625 - 2.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008395 339.0
SHD3_k127_771803_8 Metal dependent phosphohydrolases with conserved 'HD' motif. K00970 - 2.7.7.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005141 310.0
SHD3_k127_771803_9 Esterase PHB depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001059 250.0
SHD3_k127_786228_0 Amino acid permease - - - 3.157e-216 689.0
SHD3_k127_786228_1 ammonium transporter K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 566.0
SHD3_k127_786228_10 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000315 303.0
SHD3_k127_786228_11 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001143 287.0
SHD3_k127_786228_12 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000001377 213.0
SHD3_k127_786228_13 Zinc-dependent metalloprotease - - - 0.000000000000000000000000000000000000000000000000000006658 211.0
SHD3_k127_786228_14 Nitroreductase family - - - 0.0000000000000000000000000000000000000000003636 167.0
SHD3_k127_786228_15 Putative beta-barrel porin-2, OmpL-like. bbp2 - - - 0.00000000000000000000000000007646 130.0
SHD3_k127_786228_16 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000003832 113.0
SHD3_k127_786228_17 Domain of unknown function (DUF4833) - - - 0.0000000000000000002735 94.0
SHD3_k127_786228_18 Calcium ion binding - GO:0002009,GO:0002165,GO:0003674,GO:0005198,GO:0005201,GO:0005575,GO:0005576,GO:0007275,GO:0007424,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007552,GO:0007560,GO:0007591,GO:0008150,GO:0008362,GO:0008587,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0022404,GO:0031012,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040003,GO:0040005,GO:0042303,GO:0042335,GO:0044421,GO:0044719,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0060429,GO:0060541,GO:0060562,GO:0065007,GO:0065008,GO:0090066 - 0.000002195 61.0
SHD3_k127_786228_2 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 526.0
SHD3_k127_786228_3 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 404.0
SHD3_k127_786228_4 aldo keto reductase K05275 - 1.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005603 390.0
SHD3_k127_786228_5 PFAM ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 374.0
SHD3_k127_786228_6 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002911 372.0
SHD3_k127_786228_7 PFAM ABC transporter K01990,K01992,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003292 365.0
SHD3_k127_786228_8 Carbohydrate-selective porin, OprB family K16080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003051 366.0
SHD3_k127_786228_9 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 295.0
SHD3_k127_796995_0 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061 523.0
SHD3_k127_796995_1 Belongs to the glycosyl hydrolase 11 (cellulase G) family K01181 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000841 321.0
SHD3_k127_796995_2 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 310.0
SHD3_k127_796995_3 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004671 254.0
SHD3_k127_796995_4 NAD(P)H-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000007014 241.0
SHD3_k127_796995_5 Radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000003036 245.0
SHD3_k127_796995_6 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000208 238.0
SHD3_k127_796995_7 Uncharacterized conserved protein (DUF2196) - - - 0.000000000000002344 84.0
SHD3_k127_796995_8 translation initiation factor activity K03113 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000006203 68.0
SHD3_k127_796995_9 Outer membrane efflux protein K18903 - - 0.0007114 47.0
SHD3_k127_801333_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000001264 188.0
SHD3_k127_801333_1 peptidyl-tyrosine sulfation - - - 0.00000002536 60.0
SHD3_k127_801333_2 Transcriptional regulator PadR-like family - - - 0.0000000366 63.0
SHD3_k127_801333_3 cellulose binding - - - 0.0000006779 62.0
SHD3_k127_801333_4 serine threonine protein kinase - - - 0.0003572 53.0
SHD3_k127_840802_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 8.402e-209 660.0
SHD3_k127_840802_1 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000738 389.0
SHD3_k127_840802_10 Transglutaminase-like superfamily - - - 0.00000000001523 70.0
SHD3_k127_840802_2 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007925 381.0
SHD3_k127_840802_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004565 286.0
SHD3_k127_840802_4 protein conserved in cyanobacteria - - - 0.00000000000000000000000000000000000000000000000000000000000008171 220.0
SHD3_k127_840802_5 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000004296 222.0
SHD3_k127_840802_6 3'(2'),5'-bisphosphate nucleotidase K01082 - 3.1.3.7 0.000000000000000000000000000000000000000000000000000001965 203.0
SHD3_k127_840802_7 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000001313 108.0
SHD3_k127_840802_8 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.000000000000000001307 100.0
SHD3_k127_840802_9 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.00000000000000003205 93.0
SHD3_k127_859017_0 Alpha galactosidase A K07407 - 3.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 385.0
SHD3_k127_859017_1 Esterase, phb depolymerase family K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008317 356.0
SHD3_k127_859017_2 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.00000000000000000000000000000000000000000000008636 170.0
SHD3_k127_861997_0 Belongs to the glycosyl hydrolase 31 family K01811 - 3.2.1.177 6.632e-278 878.0
SHD3_k127_861997_1 beta-galactosidase K12308 - 3.2.1.23 3.915e-231 733.0
SHD3_k127_861997_10 - - - - 0.0000000000000000000000371 108.0
SHD3_k127_861997_11 - - - - 0.0000000000000166 78.0
SHD3_k127_861997_12 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000001843 61.0
SHD3_k127_861997_13 Integrase core domain - - - 0.000001265 51.0
SHD3_k127_861997_2 cellulose binding - - - 9.481e-213 690.0
SHD3_k127_861997_3 ABC transporter K15738 - - 6.528e-197 636.0
SHD3_k127_861997_4 Anaphase-promoting complex subunit 5 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006776 494.0
SHD3_k127_861997_5 Beta propeller domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003412 430.0
SHD3_k127_861997_6 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969 386.0
SHD3_k127_861997_7 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006424 264.0
SHD3_k127_861997_8 Pyrroloquinoline quinone biosynthesis protein E - - - 0.000000000000000000000000000000000000000000000000000000000000000003885 244.0
SHD3_k127_861997_9 radical SAM K06871 - - 0.000000000000000000000000000000000000000000002153 181.0
SHD3_k127_869112_0 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 5.011e-265 847.0
SHD3_k127_869112_1 alpha-L-fucosidase K01206 GO:0003674,GO:0003824,GO:0004553,GO:0004560,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006516,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0015928,GO:0016787,GO:0016798,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008031 290.0
SHD3_k127_876051_0 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 - 1.7.99.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004661 577.0
SHD3_k127_876051_1 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 324.0
SHD3_k127_876051_2 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002673 284.0
SHD3_k127_876051_3 cyclic nucleotide binding K01420 - - 0.000000000000000000000000000000000000000000000005626 181.0
SHD3_k127_876051_4 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000296 128.0
SHD3_k127_876051_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000095 55.0
SHD3_k127_876338_0 NHL repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 576.0
SHD3_k127_876338_1 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005455 504.0
SHD3_k127_876338_10 DJ-1/PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000000001534 246.0
SHD3_k127_876338_11 Alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000005548 228.0
SHD3_k127_876338_12 Bacterial regulatory protein, Fis family K15012 - - 0.00000000000000000000000000000000000000000000000000000003414 207.0
SHD3_k127_876338_13 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000001932 183.0
SHD3_k127_876338_14 metal cluster binding - - - 0.00000000000000000000000000000000002025 145.0
SHD3_k127_876338_15 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000001121 135.0
SHD3_k127_876338_16 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000001131 135.0
SHD3_k127_876338_17 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000001524 119.0
SHD3_k127_876338_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 527.0
SHD3_k127_876338_20 Belongs to the glycosyl hydrolase 5 (cellulase A) family K19355 - 3.2.1.78 0.0000002566 64.0
SHD3_k127_876338_21 domain, Protein - - - 0.0000005427 61.0
SHD3_k127_876338_3 Belongs to the peptidase M50B family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 382.0
SHD3_k127_876338_4 Nitrogen fixation protein NifB K02585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 313.0
SHD3_k127_876338_5 Histidine kinase K15011 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 307.0
SHD3_k127_876338_6 O-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003453 293.0
SHD3_k127_876338_7 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007084 293.0
SHD3_k127_876338_8 PFAM Radical SAM domain protein K15045,K22227 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003967 283.0
SHD3_k127_876338_9 Belongs to the short-chain dehydrogenases reductases (SDR) family - GO:0003674,GO:0003824,GO:0004033,GO:0008106,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0055114 - 0.000000000000000000000000000000000000000000000000000000000000000000000002048 255.0
SHD3_k127_880321_0 Tetratricopeptide repeat - - - 7.303e-204 664.0
SHD3_k127_880321_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 6.378e-194 617.0
SHD3_k127_880321_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002637 378.0
SHD3_k127_880321_3 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005371 304.0
SHD3_k127_880321_4 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.000000000000000000000000000000000000000000000000000003701 193.0
SHD3_k127_880321_5 PIN domain - - - 0.0001228 47.0
SHD3_k127_893316_0 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000003044 216.0
SHD3_k127_893316_1 serine threonine protein kinase - - - 0.000000002762 70.0
SHD3_k127_904655_0 Peptidase S46 - - - 8.356e-240 762.0
SHD3_k127_904655_1 DNA polymerase K02337,K14162 - 2.7.7.7 2.429e-238 751.0
SHD3_k127_904655_10 Cytochrome c K00406,K03889 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000000000000000000001997 108.0
SHD3_k127_904655_11 Putative zinc- or iron-chelating domain - - - 0.00000000000000000000003299 109.0
SHD3_k127_904655_13 Histidine kinase - - - 0.0000005488 59.0
SHD3_k127_904655_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003518 450.0
SHD3_k127_904655_3 Polysaccharide biosynthesis protein K01784,K02473 - 5.1.3.2,5.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004866 419.0
SHD3_k127_904655_4 pfkB family carbohydrate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 352.0
SHD3_k127_904655_5 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004731,GO:0006082,GO:0006139,GO:0006144,GO:0006168,GO:0006520,GO:0006555,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009112,GO:0009113,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0017061,GO:0017144,GO:0018130,GO:0019438,GO:0019509,GO:0019752,GO:0034641,GO:0034654,GO:0042440,GO:0043094,GO:0043096,GO:0043101,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0055086,GO:0071265,GO:0071267,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007421 339.0
SHD3_k127_904655_6 phosphorelay signal transduction system K10941 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001778 261.0
SHD3_k127_904655_7 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000385 253.0
SHD3_k127_904655_8 Protein of unknown function (DUF507) K09804 - - 0.00000000000000000000000000000000000000000001706 172.0
SHD3_k127_904655_9 chlorophyll binding - - - 0.00000000000000000000000000000001096 136.0
SHD3_k127_92116_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.52e-235 736.0
SHD3_k127_92116_1 PspA/IM30 family K03969 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 378.0
SHD3_k127_92116_3 - - - - 0.000000000000000000000000000000004603 132.0
SHD3_k127_92116_4 PFAM transposase IS116 IS110 IS902 family - - - 0.0000000000000000000000002001 119.0
SHD3_k127_92116_5 Alpha-L-arabinofuranosidase B, catalytic - - - 0.00000000000000000000000098 120.0
SHD3_k127_929551_0 formate dehydrogenase (NAD+) activity K00123 GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0048037,GO:0051536,GO:0051540,GO:0055114 1.17.1.9 0.0 1245.0
SHD3_k127_929551_1 Phosphate-selective porin O and P - - - 0.00000000000000000000000000000000000492 153.0
SHD3_k127_96387_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 8.16e-207 662.0
SHD3_k127_96387_1 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 366.0
SHD3_k127_96387_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 342.0
SHD3_k127_96387_3 InterPro IPR007367 - - - 0.000000000000000000000000000000005402 132.0
SHD3_k127_96387_4 Worm-specific repeat type 1 - - - 0.0000001701 64.0
SHD3_k127_964697_0 PFAM extracellular solute-binding protein family 1 K17318 - - 7.985e-224 706.0
SHD3_k127_964697_1 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 605.0
SHD3_k127_964697_12 Cytochrome C oxidase, cbb3-type, subunit III K08738 - - 0.0000006786 58.0
SHD3_k127_964697_14 PFAM Oligopeptide transporter OPT superfamily - - - 0.0000007924 55.0
SHD3_k127_964697_2 Binding-protein-dependent transport system inner membrane component K17319 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 517.0
SHD3_k127_964697_3 binding-protein-dependent transport systems inner membrane component K02026,K17320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 437.0
SHD3_k127_964697_4 ABC transporter K10112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 415.0
SHD3_k127_964697_5 SMP-30/Gluconolaconase/LRE-like region K14274 GO:0003674,GO:0003824,GO:0004341,GO:0005488,GO:0005509,GO:0005575,GO:0005576,GO:0005975,GO:0005996,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016051,GO:0016053,GO:0016787,GO:0016788,GO:0019752,GO:0019852,GO:0019853,GO:0042364,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046364,GO:0046394,GO:0046872,GO:0051186,GO:0051188,GO:0052689,GO:0071704,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002226 278.0
SHD3_k127_964697_7 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000001751 114.0
SHD3_k127_964697_8 3-beta hydroxysteroid dehydrogenase/isomerase family - - - 0.0000000000000000000000113 109.0
SHD3_k127_964697_9 Tetratricopeptide repeat - - - 0.000000000000008571 86.0
SHD3_k127_988361_0 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 604.0
SHD3_k127_988361_1 ABC-type uncharacterized transport system K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000871 403.0
SHD3_k127_988361_10 Polymer-forming cytoskeletal - - - 0.00000000006584 70.0
SHD3_k127_988361_2 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 363.0
SHD3_k127_988361_3 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 298.0
SHD3_k127_988361_5 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000000000000000000000000000000000000000000000001259 239.0
SHD3_k127_988361_6 Carboxypeptidase regulatory-like domain K01365,K02030,K14475 - 3.4.22.15 0.00000000000000000000000000000000000000000000000000000000000000002851 248.0
SHD3_k127_988361_7 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000001579 172.0
SHD3_k127_988361_8 Protein kinase domain - - - 0.0000000000000000000000000000000000000000003488 170.0
SHD3_k127_988361_9 - - - - 0.000000000000000000000000000000000000001849 162.0
SHD3_k127_99314_0 Belongs to the glycosyl hydrolase family 6 K01083,K01190 - 3.1.3.8,3.2.1.23 0.0000000000000000000000000000000000002627 158.0
SHD3_k127_99314_1 DinB family - - - 0.0000000000000000000000000000000000007295 145.0