Overview

ID MAG04634
Name YYD2_bin.13
Sample SMP0125
Taxonomy
Kingdom Bacteria
Phylum Eisenbacteria
Class RBG-16-71-46
Order CAIMUX01
Family VGJL01
Genus
Species
Assembly information
Completeness (%) 76.39
Contamination (%) 4.17
GC content (%) 69.0
N50 (bp) 5,198
Genome size (bp) 2,814,269

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2490

Gene name Description KEGG GOs EC E-value Score Sequence
YYD2_k127_1021946_0 Transcriptional regulatory protein, C terminal K07670 GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016310,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0044110,GO:0044116,GO:0044117,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000001545 215.0
YYD2_k127_1021946_1 Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000527 81.0
YYD2_k127_1021946_2 Domain of unknown function (DUF4865) - - - 0.000000000001096 77.0
YYD2_k127_1040775_0 Domain of unknown function (DUF5117) - - - 3.197e-236 759.0
YYD2_k127_104670_0 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 483.0
YYD2_k127_104670_1 Peptidase M16 inactive domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 342.0
YYD2_k127_104670_2 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000005839 142.0
YYD2_k127_1082428_0 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008951 436.0
YYD2_k127_1082428_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000003313 173.0
YYD2_k127_1082428_2 Outer membrane efflux protein - - - 0.000000001394 70.0
YYD2_k127_1088878_0 deoxyhypusine monooxygenase activity - - - 0.00000005656 64.0
YYD2_k127_1102226_0 ADP binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001918 266.0
YYD2_k127_1104457_0 two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 431.0
YYD2_k127_1104457_1 Domains HisKA, HATPase_c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002951 279.0
YYD2_k127_1107709_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 385.0
YYD2_k127_1107709_1 PBS lyase HEAT domain protein repeat-containing protein K01256 - 3.4.11.2 0.00000000000000000000007355 109.0
YYD2_k127_1107709_2 Pfam Zn-finger in ubiquitin-hydrolases and other protein - - - 0.000000000000007536 74.0
YYD2_k127_1113165_0 Type IV pilus assembly protein PilM; K02662 - - 0.0000005212 61.0
YYD2_k127_1113165_1 Prokaryotic N-terminal methylation motif - - - 0.0000009041 59.0
YYD2_k127_11181_0 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008164 273.0
YYD2_k127_11181_1 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000003872 226.0
YYD2_k127_11181_2 Tetratricopeptide repeat - - - 0.0000000000908 72.0
YYD2_k127_11184_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K02504,K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 593.0
YYD2_k127_11184_1 Two component, sigma54 specific, transcriptional regulator, Fis family K02667,K07713,K07714,K19641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005226 476.0
YYD2_k127_11184_10 Tetratricopeptide repeat - - - 0.000000000005678 76.0
YYD2_k127_11184_11 peptidyl-tyrosine sulfation - - - 0.00000000002269 78.0
YYD2_k127_11184_12 Prokaryotic N-terminal methylation motif K02650 - - 0.0000002909 62.0
YYD2_k127_11184_2 twitching motility protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002861 449.0
YYD2_k127_11184_3 PFAM type II secretion system K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 425.0
YYD2_k127_11184_4 Amidohydrolase family K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000001026 263.0
YYD2_k127_11184_5 ABC-type multidrug transport system ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000204 205.0
YYD2_k127_11184_6 Sensor histidine kinase PilS, PAS domain-containing K02668,K07709 - 2.7.13.3 0.00000000000000000000000000000000000005186 162.0
YYD2_k127_11184_7 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000001945 137.0
YYD2_k127_11184_8 ABC-type transport system involved in multi-copper enzyme maturation - - - 0.0000000000000000000002075 110.0
YYD2_k127_11184_9 Helix-hairpin-helix motif K02237 - - 0.000000000000003096 82.0
YYD2_k127_1119983_0 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001089 286.0
YYD2_k127_1119983_1 - - - - 0.00000000000000000000000000000000000000714 155.0
YYD2_k127_1119983_2 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000142 147.0
YYD2_k127_1119983_3 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000008641 139.0
YYD2_k127_1120079_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 462.0
YYD2_k127_1120079_1 maturation factor XdhC CoxF family - - - 0.0000000000000000000000000003684 117.0
YYD2_k127_1125946_0 malic enzyme K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 5.499e-210 687.0
YYD2_k127_1125946_1 Fumarase C C-terminus K01744 - 4.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 522.0
YYD2_k127_1125946_2 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.00000000000000000000000000000000000000005576 176.0
YYD2_k127_1125946_3 ECF sigma factor K03088 - - 0.000000000000000000000000000002142 128.0
YYD2_k127_1125946_4 sigma factor antagonist activity K04757,K07315,K17752 - 2.7.11.1,3.1.3.3 0.000000000008598 71.0
YYD2_k127_1125946_5 STAS domain K04749 - - 0.00001024 57.0
YYD2_k127_1125946_6 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.00001197 59.0
YYD2_k127_1128840_0 Major facilitator Superfamily K08162,K08226,K16211 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000677 475.0
YYD2_k127_1128840_1 SERine Proteinase INhibitors K13963 - - 0.000000000000000000000000000000000000000000000000000000000000000000003227 241.0
YYD2_k127_1128840_2 phosphatidate phosphatase activity K19302 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009605,GO:0009607,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0042578,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0046467,GO:0046493,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0071704,GO:0075136,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.6.1.27 0.0000000000000004028 84.0
YYD2_k127_1128840_3 PFAM Uncharacterised BCR, COG1649 - - - 0.00000007147 65.0
YYD2_k127_1131449_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 543.0
YYD2_k127_1131449_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000001217 103.0
YYD2_k127_1131449_2 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000002126 81.0
YYD2_k127_1146511_0 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 380.0
YYD2_k127_1146511_1 3-beta hydroxysteroid dehydrogenase isomerase - - - 0.00000000000000000000000000000000000000000000000000000009814 209.0
YYD2_k127_1146511_2 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000002417 169.0
YYD2_k127_1146511_3 PAP2 superfamily - - - 0.000000000000000000000000000000029 141.0
YYD2_k127_1146511_4 - - - - 0.0000000000000000000000008071 110.0
YYD2_k127_1146511_5 - - - - 0.000000000000000000000003474 114.0
YYD2_k127_1146511_6 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides - - - 0.00000000000000000002828 107.0
YYD2_k127_1222952_0 protein kinase activity K08884 - 2.7.11.1 0.000000000000000000000000000000000000000000000000006078 196.0
YYD2_k127_1222952_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000766 176.0
YYD2_k127_122754_0 peptide catabolic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000007557 250.0
YYD2_k127_122754_1 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000001843 177.0
YYD2_k127_1227593_0 - K12065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002983 328.0
YYD2_k127_1227593_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000007317 62.0
YYD2_k127_1254141_0 lactate metabolic process K00113 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0044464,GO:0045333,GO:0046872,GO:0048037,GO:0051536,GO:0051540,GO:0055114,GO:0071944 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 390.0
YYD2_k127_1254141_1 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000001252 235.0
YYD2_k127_1254141_2 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000000271 144.0
YYD2_k127_1254141_3 Ferric uptake regulator family K09825 - - 0.00000000000000007621 83.0
YYD2_k127_1254141_4 Ferredoxin - - - 0.000000000000004356 79.0
YYD2_k127_1254141_5 Evidence 5 No homology to any previously reported sequences - - - 0.0000000002758 63.0
YYD2_k127_1259512_0 Bacterial Ig-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 391.0
YYD2_k127_1259512_1 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000002649 166.0
YYD2_k127_127440_0 Thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000007332 81.0
YYD2_k127_127440_1 PFAM Prokaryotic dksA traR C4-type zinc finger - - - 0.00000000003771 75.0
YYD2_k127_127497_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007008 411.0
YYD2_k127_127497_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001633 266.0
YYD2_k127_127497_2 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000002869 207.0
YYD2_k127_127497_3 - - - - 0.000000000000000247 85.0
YYD2_k127_127497_4 Peptidase M56 - - - 0.0000000000001088 84.0
YYD2_k127_127497_5 Preprotein translocase, subunit SecG K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000000006294 72.0
YYD2_k127_127497_6 Phosphoglycerate kinase K00927 GO:0001871,GO:0002020,GO:0003674,GO:0003824,GO:0004618,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009893,GO:0009986,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010755,GO:0010756,GO:0010954,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019222,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030162,GO:0030193,GO:0030195,GO:0030246,GO:0030247,GO:0030312,GO:0031323,GO:0031325,GO:0032101,GO:0032102,GO:0032268,GO:0032270,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043532,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045862,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050818,GO:0050819,GO:0050878,GO:0051171,GO:0051173,GO:0051186,GO:0051188,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051917,GO:0051919,GO:0055086,GO:0060255,GO:0061041,GO:0061045,GO:0065007,GO:0065008,GO:0070613,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0080134,GO:0090407,GO:1900046,GO:1900047,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903034,GO:1903035,GO:1903317,GO:1903319,GO:2001065 2.7.2.3 0.00000000004031 75.0
YYD2_k127_127497_7 regulatory protein - - - 0.00000000498 65.0
YYD2_k127_1286531_0 ABC transporter C-terminal domain K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 330.0
YYD2_k127_1286531_1 Subtilase family K13276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003554 320.0
YYD2_k127_1286531_2 protein secretion - - - 0.000000007971 69.0
YYD2_k127_1286531_3 Subtilase family - - - 0.00008495 50.0
YYD2_k127_1324632_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000001212 147.0
YYD2_k127_1324632_1 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000008004 118.0
YYD2_k127_1324632_2 PFAM Diacylglycerol kinase, catalytic - - - 0.00000000000000000001557 108.0
YYD2_k127_1324632_3 Aminotransferase class I and II - - - 0.00000000000586 79.0
YYD2_k127_1324632_4 - - - - 0.000002344 59.0
YYD2_k127_132747_0 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000001307 126.0
YYD2_k127_132747_1 metallopeptidase activity K01176 - 3.2.1.1 0.000000005853 66.0
YYD2_k127_132747_2 PFAM SMP-30 Gluconolaconase - - - 0.0009263 53.0
YYD2_k127_1348623_0 Peptidylprolyl isomerase K01802,K03769,K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000001511 256.0
YYD2_k127_1348623_1 CBS domain - - - 0.0000000000000000000000000000000000000000000000000000000002822 230.0
YYD2_k127_1348623_2 CBS domain - - - 0.00000000000000000000000000000000000000000000000000000165 217.0
YYD2_k127_1348623_3 Polysaccharide biosynthesis protein - - - 0.000000000000000000000006751 116.0
YYD2_k127_1353984_0 UbiA prenyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000008521 246.0
YYD2_k127_1353984_1 metal-dependent phosphohydrolase HD region - - - 0.000000000000000000000000000000000000000000000000001245 207.0
YYD2_k127_1353984_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000003997 168.0
YYD2_k127_1355571_0 Aminotransferase K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000105 280.0
YYD2_k127_1355571_1 Aminotransferase K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000001297 235.0
YYD2_k127_1355571_2 Amidinotransferase K01478 - 3.5.3.6 0.0000000000000000000000000000000000000000000000000000000000003781 224.0
YYD2_k127_1356823_0 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000001638 262.0
YYD2_k127_1356823_1 PFAM PKD domain containing protein K11751 - 3.1.3.5,3.6.1.45 0.000000000000000000000000000000000005048 152.0
YYD2_k127_1356823_2 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein - - - 0.0000007492 63.0
YYD2_k127_1361213_0 Subtilase family K13276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 340.0
YYD2_k127_1361213_1 ERAP1-like C-terminal domain K01256,K01263 - 3.4.11.14,3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002309 289.0
YYD2_k127_1361213_2 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0000726,GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0008833,GO:0009987,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001345 297.0
YYD2_k127_1361213_3 permease - GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.000000000000000000000000000000000000004576 154.0
YYD2_k127_1361213_4 Exonuclease - - - 0.0000000000000000000000000000000001204 140.0
YYD2_k127_1361213_5 - - - - 0.0000000000000000000000000000006389 128.0
YYD2_k127_1361213_6 extracellular matrix structural constituent - - - 0.00000000001661 78.0
YYD2_k127_1361213_7 subunit of a heme lyase K02200 - - 0.000000003855 66.0
YYD2_k127_1362991_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 578.0
YYD2_k127_1365301_0 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000505 194.0
YYD2_k127_1365301_1 Uncharacterised protein family UPF0066 - - - 0.0000000000000000000000000000000000000000000000004615 180.0
YYD2_k127_1365301_2 Rho termination factor, N-terminal domain - - - 0.0000000000000000000000007329 116.0
YYD2_k127_1365301_3 TIGRFAM Threonine synthase K01733 - 4.2.3.1 0.0000000000000000003058 90.0
YYD2_k127_1368160_0 PKD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009311 283.0
YYD2_k127_1368160_1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000002357 202.0
YYD2_k127_137102_0 ERAP1-like C-terminal domain K01256,K01263 - 3.4.11.14,3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 306.0
YYD2_k127_137102_1 racemase activity, acting on amino acids and derivatives K01779 - 5.1.1.13 0.000000000000000000000000000000001783 141.0
YYD2_k127_137800_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008686 351.0
YYD2_k127_137800_1 helicase involved in DNA repair and perhaps also replication K03722 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009619 344.0
YYD2_k127_137800_2 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000004273 253.0
YYD2_k127_137800_3 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000003874 224.0
YYD2_k127_137800_4 Uncharacterized conserved protein (DUF2304) K09153 - - 0.0000002825 59.0
YYD2_k127_1385236_0 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006459 243.0
YYD2_k127_1385236_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000001407 186.0
YYD2_k127_1385236_2 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000001474 152.0
YYD2_k127_1385236_3 redox protein, regulator of disulfide bond formation K07397 - - 0.000000000000000000000000000000000001052 151.0
YYD2_k127_1385236_4 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.0000000000000000000000000000000001367 136.0
YYD2_k127_1385236_5 PFAM sigma-70 region 2 domain protein K03088 - - 0.000000000000000000000000007359 122.0
YYD2_k127_1385236_6 TQO small subunit DoxD K15977 - - 0.00000000000000000002094 97.0
YYD2_k127_1385236_7 TIGRFAM MJ0042 family finger-like protein - - - 0.0000000001182 73.0
YYD2_k127_1385236_8 chain release factor - - - 0.0000004257 52.0
YYD2_k127_1391147_0 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000001061 241.0
YYD2_k127_1391147_1 AI-2E family transporter - - - 0.0002536 51.0
YYD2_k127_1408303_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002334 447.0
YYD2_k127_1408303_1 PFAM peptidase M1, membrane alanine aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001303 285.0
YYD2_k127_1414985_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000004742 209.0
YYD2_k127_1414985_1 Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum K13626 - - 0.00000000000000008128 86.0
YYD2_k127_1423373_0 PFAM PQQ enzyme repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002382 275.0
YYD2_k127_1423373_1 PFAM Glycosyltransferase family 28 C-terminal domain - - - 0.0003978 48.0
YYD2_k127_1432785_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 2.133e-253 790.0
YYD2_k127_1432785_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000007313 241.0
YYD2_k127_1432785_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000000000000000000000001862 140.0
YYD2_k127_1438329_0 unfolded protein binding K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0018995,GO:0019219,GO:0019222,GO:0020003,GO:0022607,GO:0030430,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0033643,GO:0033646,GO:0033655,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043531,GO:0043656,GO:0043657,GO:0043933,GO:0044085,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0065010,GO:0070887,GO:0071310,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 3.382e-294 916.0
YYD2_k127_144250_0 catalyzes the conversion of acetate and CoA to acetyl-CoA K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 585.0
YYD2_k127_144250_1 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 517.0
YYD2_k127_144250_2 belongs to the iron- containing alcohol dehydrogenase family K04072 - 1.1.1.1,1.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 404.0
YYD2_k127_144250_3 alginic acid biosynthetic process - - - 0.000006187 53.0
YYD2_k127_144250_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis - - - 0.0001872 49.0
YYD2_k127_1453865_0 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000002508 196.0
YYD2_k127_1453865_1 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.0003327 53.0
YYD2_k127_1459548_0 Tetratricopeptide repeat K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000002535 227.0
YYD2_k127_1459548_1 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000007516 100.0
YYD2_k127_1469291_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 474.0
YYD2_k127_1469291_1 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000007345 202.0
YYD2_k127_1469291_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000007591 98.0
YYD2_k127_15019_0 - - - - 0.000000000000000001688 95.0
YYD2_k127_15019_1 - - - - 0.0000000000001618 81.0
YYD2_k127_15019_2 amine dehydrogenase activity - - - 0.00002562 55.0
YYD2_k127_150222_0 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002066 272.0
YYD2_k127_150222_1 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000002032 126.0
YYD2_k127_150222_2 Domain of unknown function (DUF1844) - - - 0.000000000001485 72.0
YYD2_k127_1512796_0 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003208 576.0
YYD2_k127_1512796_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005244 383.0
YYD2_k127_1512796_2 subfamily IA, variant 1 K08723 - 3.1.3.5 0.000000000000000000000000002835 122.0
YYD2_k127_1529980_0 Coenzyme A transferase K01027,K01028,K01034 - 2.8.3.5,2.8.3.8,2.8.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 335.0
YYD2_k127_1529980_1 TIGRFAM methylmalonyl-CoA mutase C-terminal domain K01849 - 5.4.99.2 0.000000000000005486 76.0
YYD2_k127_1534157_0 peptidyl-tyrosine sulfation - - - 0.00000006776 66.0
YYD2_k127_1555989_0 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 312.0
YYD2_k127_159735_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K13378 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003042 585.0
YYD2_k127_159735_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000007422 243.0
YYD2_k127_159735_2 Sodium:sulfate symporter transmembrane region K03319,K14445 - - 0.0000000000000000000000000000000000003902 145.0
YYD2_k127_159735_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000002308 119.0
YYD2_k127_1633228_0 HpcH/HpaI aldolase/citrate lyase family K01644,K18292 - 4.1.3.25,4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007582 409.0
YYD2_k127_1633228_1 Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase K01910 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008771,GO:0009987,GO:0016874,GO:0016877,GO:0016878,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 6.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 335.0
YYD2_k127_1633228_2 PFAM Citrate lyase, alpha subunit (CitF) K01643 - 2.8.3.10 0.000000000000000000000000000000000000000000000000000000000000000001318 235.0
YYD2_k127_1633228_3 Domain of unknown function (DUF296) K06934 - - 0.000000000000000000000000000000000000000000000009919 178.0
YYD2_k127_1633228_4 Covalent carrier of the coenzyme of citrate lyase K01646 - - 0.000000000000000000008984 96.0
YYD2_k127_1637172_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 349.0
YYD2_k127_1637172_1 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.00000000000000000000000000000000000000000000000003301 190.0
YYD2_k127_1637172_2 CoA-binding protein K06929 - - 0.000000000000000000000000000004799 124.0
YYD2_k127_1637172_3 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000002729 131.0
YYD2_k127_1637172_4 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000276 130.0
YYD2_k127_1637256_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1751.0
YYD2_k127_1637256_1 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 398.0
YYD2_k127_1637256_2 Endonuclease Exonuclease Phosphatase - - - 0.00000000000000000000000004232 124.0
YYD2_k127_1639452_0 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 416.0
YYD2_k127_1639452_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004311 314.0
YYD2_k127_1639452_10 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000001015 81.0
YYD2_k127_1639452_11 Carboxymuconolactone decarboxylase family - - - 0.000000000001866 68.0
YYD2_k127_1639452_12 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000003596 63.0
YYD2_k127_1639452_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000001046 273.0
YYD2_k127_1639452_3 Fungalysin metallopeptidase (M36) - - - 0.0000000000000000000000000000000000000000000000000001322 211.0
YYD2_k127_1639452_4 Transcriptional regulator, TraR DksA family K06204 - - 0.000000000000000000000000000006051 123.0
YYD2_k127_1639452_5 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000000009617 115.0
YYD2_k127_1639452_6 antisigma factor binding K04749 - - 0.0000000000000000001083 101.0
YYD2_k127_1639452_7 PFAM DivIVA K04074 - - 0.000000000000000000506 98.0
YYD2_k127_1639452_8 Carboxymuconolactone decarboxylase family - - - 0.000000000000000002685 87.0
YYD2_k127_1639452_9 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000000000000000007335 91.0
YYD2_k127_1640905_0 Transporter DASS family K14445 - - 0.000000000000000000000000000000000005087 145.0
YYD2_k127_1640905_1 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000005096 138.0
YYD2_k127_1649166_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1219.0
YYD2_k127_1649166_1 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 306.0
YYD2_k127_1649166_2 MiaB-like tRNA modifying enzyme K18707 - 2.8.4.5 0.000000000000000000000000000000000000000009048 162.0
YYD2_k127_1649166_3 PFAM Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000013 70.0
YYD2_k127_1668933_0 Thymidylate synthase complementing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 477.0
YYD2_k127_1668933_1 Belongs to the peptidase S11 family K01286,K07258 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000001223 266.0
YYD2_k127_1668933_2 Belongs to the peptidase S11 family K01286,K07258 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000001811 229.0
YYD2_k127_1668933_3 Methyltransferase K00587 - 2.1.1.100 0.00000004477 57.0
YYD2_k127_1672895_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 1.519e-249 786.0
YYD2_k127_1672895_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016625,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0030312,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0047553,GO:0055114,GO:0071704,GO:0071944,GO:0072350 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 449.0
YYD2_k127_1672895_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000006407 240.0
YYD2_k127_1672895_3 Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway K03707 - 3.5.99.2 0.0000000000000000000000000000000000000000000000142 186.0
YYD2_k127_1672895_4 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000003861 65.0
YYD2_k127_1672895_5 Methyltransferase domain - - - 0.00003671 55.0
YYD2_k127_1672941_0 NUDIX domain K03574 - 3.6.1.55 0.00000000000000000000000000000000000000002012 157.0
YYD2_k127_1672941_1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000001421 144.0
YYD2_k127_1672941_2 Lamin Tail Domain - - - 0.0000000779 62.0
YYD2_k127_1672941_3 Peptidase family M23 - - - 0.00003896 54.0
YYD2_k127_1672941_4 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0001623 54.0
YYD2_k127_1674145_0 Iron-sulfur cluster-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000965 229.0
YYD2_k127_1674145_1 FemAB family - - - 0.0000000000000000000000000000000000000000000369 176.0
YYD2_k127_1674145_2 signal peptide processing K03100 - 3.4.21.89 0.000000000000000000000000000000003124 134.0
YYD2_k127_1674145_3 Glycosyl transferases group 1 - - - 0.000000000000000000000002066 116.0
YYD2_k127_1674257_0 Uncharacterized protein conserved in bacteria (DUF2344) - - - 2.929e-199 651.0
YYD2_k127_1674257_1 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000001306 194.0
YYD2_k127_1682311_0 prohibitin homologues K07192 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 305.0
YYD2_k127_1682311_1 PIN domain - - - 0.00000000000002608 79.0
YYD2_k127_1682311_2 SpoVT / AbrB like domain - - - 0.0000000000002033 72.0
YYD2_k127_1689100_0 Domains REC, sigma54 interaction, HTH8 K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 413.0
YYD2_k127_1689100_1 xylanase chitin deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 287.0
YYD2_k127_1689100_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000007048 239.0
YYD2_k127_1689100_3 COG0457 FOG TPR repeat - - - 0.0000003007 64.0
YYD2_k127_1695399_0 cellulose binding - - - 0.000000000000000000000000000601 131.0
YYD2_k127_1698160_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000001266 186.0
YYD2_k127_1698160_1 TIGRFAM molybdenum cofactor synthesis K03750 - 2.10.1.1 0.000000000000000000000000000000111 140.0
YYD2_k127_170679_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008341 462.0
YYD2_k127_1719862_0 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 369.0
YYD2_k127_1719862_1 Bacterial transcriptional activator domain - - - 0.00001865 53.0
YYD2_k127_172336_0 SMART PUA domain containing protein K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009162 344.0
YYD2_k127_172336_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002932 289.0
YYD2_k127_172336_2 Carbon-nitrogen hydrolase K03820 - - 0.00000000000000000000000000000000000000000000000000000000000005294 230.0
YYD2_k127_172336_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000003064 198.0
YYD2_k127_172336_4 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000009413 149.0
YYD2_k127_172336_5 guanyl-nucleotide exchange factor activity - - - 0.0006972 44.0
YYD2_k127_1750582_0 oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 390.0
YYD2_k127_1750582_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 310.0
YYD2_k127_1750582_2 Belongs to the 5'-nucleotidase family K11751 - 3.1.3.5,3.6.1.45 0.0000000000000000000003092 105.0
YYD2_k127_1750582_3 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000003841 106.0
YYD2_k127_1755347_0 LVIVD repeat - - - 0.00000000000000000000000000001118 135.0
YYD2_k127_1772755_0 Belongs to the Orn Lys Arg decarboxylase class-II family K00928,K12526 - 2.7.2.4,4.1.1.20 6.802e-315 989.0
YYD2_k127_1772755_1 Thioredoxin - - - 0.00000000000000000000009083 114.0
YYD2_k127_1772755_2 endonuclease activity K07451 - - 0.00000000000000002935 88.0
YYD2_k127_1772755_3 endonuclease activity K07451 - - 0.000003041 56.0
YYD2_k127_1813259_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000001456 247.0
YYD2_k127_1813259_1 lipopolysaccharide metabolic process K07502,K08309,K19804,K21572 - - 0.0000002551 59.0
YYD2_k127_184308_0 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 412.0
YYD2_k127_184308_1 peptidase activity, acting on L-amino acid peptides K05996 - 3.4.17.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006747 329.0
YYD2_k127_184308_2 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420,K10914 - - 0.000000000000000000000000000000000000000000000000114 184.0
YYD2_k127_184308_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000248 119.0
YYD2_k127_184308_4 molybdate ion transport K02019 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0042802,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000003491 108.0
YYD2_k127_184308_5 endonuclease activity K07451 - - 0.000000000001382 78.0
YYD2_k127_1864164_0 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 306.0
YYD2_k127_1864164_1 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000003798 187.0
YYD2_k127_1884092_0 Malic enzyme, NAD binding domain K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 2.741e-298 936.0
YYD2_k127_1884092_1 Domain of unknown function (DUF4162) K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 337.0
YYD2_k127_1884092_2 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006306 322.0
YYD2_k127_1884092_3 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007056 315.0
YYD2_k127_1884092_4 Prephenate dehydrogenase K00210 - 1.3.1.12 0.000000000000000000000000000000000000000000000001875 197.0
YYD2_k127_1884092_5 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.000000000000000000000000000000002437 141.0
YYD2_k127_1884092_6 Uncharacterized protein conserved in bacteria (DUF2087) - - - 0.0000000000000000001689 97.0
YYD2_k127_1884092_7 DNA binding domain, excisionase family - - - 0.0000258 54.0
YYD2_k127_1885582_0 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 5.243e-198 626.0
YYD2_k127_1885582_1 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008126 497.0
YYD2_k127_1885582_2 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007918 289.0
YYD2_k127_1885582_3 protein secretion K01179 - 3.2.1.4 0.00004611 49.0
YYD2_k127_190076_0 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002136 597.0
YYD2_k127_190076_1 Methyltransferase - - - 0.00000000000000000000000000000002894 130.0
YYD2_k127_1910695_0 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004963 335.0
YYD2_k127_1910695_1 Surface antigen - - - 0.000000000000000007939 96.0
YYD2_k127_1910695_2 SdpI/YhfL protein family - - - 0.0000000000000001275 87.0
YYD2_k127_1910695_3 Zinc metalloprotease (Elastase) - - - 0.0000007764 61.0
YYD2_k127_1910695_4 - - - - 0.000009694 57.0
YYD2_k127_1910695_5 - - - - 0.00006021 50.0
YYD2_k127_1913261_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.14 1.258e-215 677.0
YYD2_k127_1913261_2 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.000000000000000000003478 103.0
YYD2_k127_1931070_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.2,1.4.1.3,1.4.1.4 6.81e-226 709.0
YYD2_k127_1931070_1 PAP2 superfamily - - - 0.000000000000000001835 92.0
YYD2_k127_1931070_2 Peptidase M56 - - - 0.00000000000000001852 89.0
YYD2_k127_1931602_0 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006388 254.0
YYD2_k127_1931602_1 PFAM ABC transporter K09817 - - 0.000000000000000000000000000000000000000000001355 177.0
YYD2_k127_1931602_2 ABC-type Mn2 Zn2 transport systems permease components K09816 - - 0.0000000000000000000000000000000000000000001094 173.0
YYD2_k127_1931602_3 Ferric uptake regulator family K03711 - - 0.0000000000000000001774 90.0
YYD2_k127_1936180_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005616 459.0
YYD2_k127_1936180_1 ABC-type sugar transport system periplasmic component K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 304.0
YYD2_k127_1936180_2 LVIVD repeat - - - 0.0000000000000000000000000000000000001529 159.0
YYD2_k127_1936180_3 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000001759 87.0
YYD2_k127_1936180_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000003481 59.0
YYD2_k127_1938054_0 Immune inhibitor A peptidase M6 - - - 0.0000000000000000000000000001273 132.0
YYD2_k127_1938054_1 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000225 96.0
YYD2_k127_1938054_2 Protein of unknown function (DUF423) - - - 0.0000000000000007402 81.0
YYD2_k127_19404_0 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 318.0
YYD2_k127_19404_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009966 318.0
YYD2_k127_19404_2 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001103 244.0
YYD2_k127_19404_3 Sugar nucleotidyl transferase - - - 0.000000000000000000000000000000000007067 149.0
YYD2_k127_19404_4 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000002789 131.0
YYD2_k127_1945104_0 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 551.0
YYD2_k127_1945104_1 PFAM Methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001248 276.0
YYD2_k127_1945104_2 cellulose binding - - - 0.0000000000000000000000000000000000802 145.0
YYD2_k127_1945104_4 cellulase activity K01179,K01224,K01729 - 3.2.1.4,3.2.1.89,4.2.2.3 0.0003556 52.0
YYD2_k127_1945202_0 Belongs to the carbamoyltransferase HypF family K04656 - - 9.034e-212 692.0
YYD2_k127_1945202_1 Nickel-dependent hydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009697 437.0
YYD2_k127_1945202_2 Belongs to the HypD family K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 373.0
YYD2_k127_1945202_3 Oxidoreductase NAD-binding domain K15765 - 1.18.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 317.0
YYD2_k127_1945202_4 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002954 272.0
YYD2_k127_1945202_5 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003729 271.0
YYD2_k127_1945202_6 hydrogenase maturation protease K03605 - - 0.00000000000006263 83.0
YYD2_k127_1945202_7 hydrogenase expression formation protein K04653 - - 0.000000000001353 79.0
YYD2_k127_1976096_0 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 394.0
YYD2_k127_1997639_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.384e-270 870.0
YYD2_k127_1997639_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 595.0
YYD2_k127_1997639_2 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005664 557.0
YYD2_k127_1997639_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 306.0
YYD2_k127_1997639_4 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000233 234.0
YYD2_k127_1997639_5 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000001441 184.0
YYD2_k127_2001696_0 Transcriptional regulator - - - 0.000000000000000000000192 108.0
YYD2_k127_2001696_1 nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.0000000000000000756 82.0
YYD2_k127_2001696_2 TIGRFAM DMSO reductase family type II enzyme, heme b subunit - - - 0.000000000000002153 88.0
YYD2_k127_2001696_3 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000002723 84.0
YYD2_k127_2001696_4 chaperone-mediated protein complex assembly - - - 0.000000000006146 78.0
YYD2_k127_2012751_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695,K03696 - - 0.0 1053.0
YYD2_k127_2012751_1 Propeptide_C25 - - - 0.0000000000000003488 93.0
YYD2_k127_2030302_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007752 476.0
YYD2_k127_2030302_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002671 282.0
YYD2_k127_2030302_2 Acid phosphatase homologues - - - 0.00000000000000000000000000000000000000000000000008679 188.0
YYD2_k127_2030302_3 - - - - 0.00000000000000000000000000000000002452 138.0
YYD2_k127_2030302_4 RNA recognition motif - - - 0.0000000000000000000000000000003093 126.0
YYD2_k127_2030302_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.000000000000000000000000000001457 129.0
YYD2_k127_2030302_7 PAP2 superfamily - - - 0.0000000000000000001146 100.0
YYD2_k127_2030302_8 Domain of unknown function (DUF4143) - - - 0.0000000000001232 73.0
YYD2_k127_2065551_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003764 471.0
YYD2_k127_2065551_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000003435 270.0
YYD2_k127_2065551_2 PFAM glutamine amidotransferase class-I K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000001147 252.0
YYD2_k127_2065551_3 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000368 169.0
YYD2_k127_2068149_0 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000267 277.0
YYD2_k127_2068149_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000005843 248.0
YYD2_k127_2071697_0 Hydrophobe Amphiphile Efflux-1 (HAE1) Family K03296,K18138 - - 0.0 1301.0
YYD2_k127_2071697_1 Outer membrane efflux protein K18139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 499.0
YYD2_k127_2071697_2 Uncharacterized protein conserved in bacteria (DUF2252) - - - 0.000000000000000000000000000000000000000000000000000000000002884 213.0
YYD2_k127_2071697_3 Biotin-lipoyl like K03585 - - 0.000000000000000000000000000000000000000000001462 168.0
YYD2_k127_2088614_0 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 341.0
YYD2_k127_2088614_1 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000001691 193.0
YYD2_k127_2088614_2 - - - - 0.0000000000000000003 87.0
YYD2_k127_2088614_3 phosphoserine phosphatase K01079 GO:0003674,GO:0003824,GO:0004647,GO:0004721,GO:0004722,GO:0005488,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016597,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0031406,GO:0036094,GO:0036211,GO:0040007,GO:0042578,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564 3.1.3.3 0.000000000000000005547 91.0
YYD2_k127_2091364_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004923 419.0
YYD2_k127_2091364_1 Belongs to the mandelate racemase muconate lactonizing enzyme family K19802 - 5.1.1.20 0.0008996 43.0
YYD2_k127_2149713_0 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II K01840,K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 461.0
YYD2_k127_2149713_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 453.0
YYD2_k127_2149713_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003356 393.0
YYD2_k127_2149713_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.000000000000000000000000003485 123.0
YYD2_k127_2149713_4 Ethylbenzene dehydrogenase - - - 0.0000000000000004164 91.0
YYD2_k127_2151453_0 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000705 222.0
YYD2_k127_2151453_1 - - - - 0.000000000000000000000000000000000000000000000000002542 190.0
YYD2_k127_2151453_2 - - - - 0.000000000000000000000000000000000000000000007231 171.0
YYD2_k127_2151453_3 - - - - 0.00000000000000000000008727 99.0
YYD2_k127_2151453_4 HNH endonuclease - - - 0.00000257 50.0
YYD2_k127_2153692_0 aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 402.0
YYD2_k127_2153692_1 amino acid transport K02029,K02030 - - 0.0000000000000000000000000000000000000000000000000000000005771 211.0
YYD2_k127_2153692_2 PFAM binding-protein-dependent transport systems inner membrane component K02029 - - 0.00000000009285 64.0
YYD2_k127_2154274_0 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003883 336.0
YYD2_k127_2154274_1 pfkB family carbohydrate kinase K00852,K00856 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004001,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005975,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019200,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032552,GO:0032553,GO:0032554,GO:0032555,GO:0032559,GO:0032560,GO:0032561,GO:0032567,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046390,GO:0046483,GO:0046835,GO:0046872,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.15,2.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 312.0
YYD2_k127_2154274_2 PFAM Peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001984 285.0
YYD2_k127_2154274_3 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000957 245.0
YYD2_k127_2154274_4 Belongs to the FPP GGPP synthase family K02523,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29,2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000002222 233.0
YYD2_k127_2154274_5 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.000000000000000000000000000000000000009433 157.0
YYD2_k127_2154274_6 Histidine kinase K14986 - 2.7.13.3 0.0000000000000000000000000000000002833 150.0
YYD2_k127_2154274_7 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000001262 123.0
YYD2_k127_2154274_8 - - - - 0.00000000000000001326 97.0
YYD2_k127_2155381_0 Threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008951 341.0
YYD2_k127_2155381_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000002297 205.0
YYD2_k127_2155381_2 amine dehydrogenase activity - - - 0.000003869 56.0
YYD2_k127_2155852_0 3-hydroxyacyl-CoA dehydrogenase K00074 GO:0003674,GO:0003824,GO:0003857,GO:0006082,GO:0006725,GO:0006805,GO:0008150,GO:0008152,GO:0008691,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019439,GO:0019748,GO:0019752,GO:0032787,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0098754,GO:1901360,GO:1901361,GO:1901575 1.1.1.157 0.000000000000000000000000000000000000000000003845 184.0
YYD2_k127_2159788_0 AcrB/AcrD/AcrF family K07787 - - 1.541e-215 682.0
YYD2_k127_2159788_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 GO:0000041,GO:0003674,GO:0005215,GO:0005375,GO:0005488,GO:0005507,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0006873,GO:0006875,GO:0006878,GO:0006950,GO:0008150,GO:0008324,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0010272,GO:0010273,GO:0015075,GO:0015080,GO:0015318,GO:0015673,GO:0015679,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031224,GO:0034220,GO:0035434,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0044425,GO:0044464,GO:0046688,GO:0046872,GO:0046873,GO:0046914,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060003,GO:0061687,GO:0065007,GO:0065008,GO:0071944,GO:0097501,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:1902601,GO:1990169 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000454 409.0
YYD2_k127_2159788_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009967 352.0
YYD2_k127_2159788_3 metallophosphoesterase K07096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004155 282.0
YYD2_k127_2159788_4 Dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001772 240.0
YYD2_k127_2159788_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.0000000000000000000000000000000000000000000000000000000000431 209.0
YYD2_k127_2159788_6 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.0000000000000000000000000000000000000000000000000005039 187.0
YYD2_k127_2159788_7 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000007251 180.0
YYD2_k127_2159788_8 TM2 domain - - - 0.00000000000000000000000000000000004871 139.0
YYD2_k127_2159788_9 PFAM ATP-binding region, ATPase domain protein - - - 0.00000002676 57.0
YYD2_k127_2161852_0 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000002503 234.0
YYD2_k127_2161852_1 oligosaccharyl transferase activity - - - 0.00000000002106 77.0
YYD2_k127_2167897_0 PrkA AAA domain K07180 - - 0.0 1022.0
YYD2_k127_2167897_1 SpoVR like protein K06415 - - 7.637e-195 619.0
YYD2_k127_2167897_2 ABC transporter K06147,K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009074 562.0
YYD2_k127_2167897_3 Belongs to the UPF0229 family K09786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 492.0
YYD2_k127_2167897_4 ABC transporter, transmembrane K18889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008355 464.0
YYD2_k127_2167897_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000001339 171.0
YYD2_k127_2167897_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009378,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0031668,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:1901360 3.6.4.12 0.000000000000000000000000000000165 134.0
YYD2_k127_2167897_7 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.000000000000001388 79.0
YYD2_k127_2168106_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000502 477.0
YYD2_k127_2168106_1 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009293 365.0
YYD2_k127_2168106_2 Ferrochelatase K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000153 266.0
YYD2_k127_2168106_3 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000003655 220.0
YYD2_k127_2168106_4 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000009414 164.0
YYD2_k127_2169924_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 486.0
YYD2_k127_2169924_1 PFAM Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 433.0
YYD2_k127_2169924_2 PFAM Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 391.0
YYD2_k127_2169924_3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004939 372.0
YYD2_k127_2169924_4 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.00000000000000000000000000000000000000000000000003471 193.0
YYD2_k127_2169924_5 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.00000002371 60.0
YYD2_k127_2170657_0 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000001757 136.0
YYD2_k127_2170657_1 Polymer-forming cytoskeletal - - - 0.00000000008029 74.0
YYD2_k127_2170657_2 Putative zinc-finger - - - 0.0004867 52.0
YYD2_k127_2172887_0 Acyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000003856 226.0
YYD2_k127_2172887_1 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000000000000000000000000004315 117.0
YYD2_k127_2172887_2 positive regulation of growth - - - 0.0000000003247 64.0
YYD2_k127_2172887_3 Dienelactone hydrolase family - - - 0.0000006513 61.0
YYD2_k127_2173217_0 SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 361.0
YYD2_k127_2173217_1 SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000007655 234.0
YYD2_k127_2173217_2 EamA-like transporter family - - - 0.0000000000000000000000000000003031 137.0
YYD2_k127_2182583_0 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003457 361.0
YYD2_k127_2182583_1 protein methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000169 209.0
YYD2_k127_2182583_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 0.000000000000006982 76.0
YYD2_k127_2187331_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261,K00262 - 1.4.1.3,1.4.1.4 5.863e-217 686.0
YYD2_k127_2187331_1 Histidine kinase K20974 - 2.7.13.3 0.00000000000000000005439 93.0
YYD2_k127_2187331_2 mannose-ethanolamine phosphotransferase activity - - - 0.00000004568 64.0
YYD2_k127_2187331_3 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000004375 63.0
YYD2_k127_2188049_0 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 293.0
YYD2_k127_2188049_1 Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) K02551 - 2.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000005642 274.0
YYD2_k127_2188049_2 Catalyzes the conversion of chorismate to isochorismate K02552 GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 5.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000118 235.0
YYD2_k127_2188049_3 Belongs to the GcvT family K06980 - - 0.000001385 61.0
YYD2_k127_2188616_0 Aromatic amino acid lyase K01745 - 4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 587.0
YYD2_k127_2188616_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 298.0
YYD2_k127_2188616_2 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000001756 200.0
YYD2_k127_2188616_3 Parallel beta-helix repeats - - - 0.00000000000000000000000002113 126.0
YYD2_k127_2188616_4 decarboxylase - - - 0.00000000000001471 83.0
YYD2_k127_2192552_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 7.472e-251 833.0
YYD2_k127_2192552_1 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007177 274.0
YYD2_k127_2192552_2 Trypsin-like serine protease K01337 - 3.4.21.50 0.000000000000000000000000393 118.0
YYD2_k127_2201562_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 505.0
YYD2_k127_2201562_1 Domain of unknown function (DUF2088) - - - 0.00000000000000000000000000000001021 143.0
YYD2_k127_2201562_2 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.00000372 50.0
YYD2_k127_2202314_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 1.378e-196 631.0
YYD2_k127_2202314_1 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004344 545.0
YYD2_k127_2202314_2 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005308 479.0
YYD2_k127_2202314_3 Conserved carboxylase domain K01571,K01960 - 4.1.1.3,6.4.1.1 0.000000004986 67.0
YYD2_k127_2204689_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000001625 220.0
YYD2_k127_2204689_1 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000007224 220.0
YYD2_k127_2204689_2 Glycosyltransferase like family 2 K03606,K07011 - - 0.0000000000000000000000000000000000009637 156.0
YYD2_k127_2204689_3 Belongs to the MraZ family K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.0000000000000001275 87.0
YYD2_k127_2204689_4 PFAM Two component regulator propeller - - - 0.000000000000001504 92.0
YYD2_k127_2204689_5 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.00000000000001915 82.0
YYD2_k127_2204689_6 antisigma factor binding - - - 0.000001126 57.0
YYD2_k127_2216205_1 peptidase S9 - - - 0.00000000000000006739 81.0
YYD2_k127_2223487_0 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 397.0
YYD2_k127_2223487_1 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.0000000000000000000000000000000000001428 145.0
YYD2_k127_2226520_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000009425 226.0
YYD2_k127_2226520_1 Soluble NSF attachment protein, SNAP - - - 0.000000000000000000000000000000000002525 160.0
YYD2_k127_2226520_2 calcium- and calmodulin-responsive adenylate cyclase activity K01179,K01406,K07004 - 3.2.1.4,3.4.24.40 0.0000000000009226 80.0
YYD2_k127_2226520_3 RNA polymerase sigma factor K03088 - - 0.0000000019 67.0
YYD2_k127_2226520_4 cellulase activity K01179,K01361,K13277,K21449 - 3.2.1.4,3.4.21.96 0.00000002841 66.0
YYD2_k127_2231623_0 Sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001409 241.0
YYD2_k127_2231623_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000003761 100.0
YYD2_k127_2237259_0 Amidohydrolase family - - - 0.00000000000006151 72.0
YYD2_k127_2253133_0 Sterol carrier protein domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005028 352.0
YYD2_k127_2253133_1 Parallel beta-helix repeats - - - 0.000000000001502 74.0
YYD2_k127_2253133_2 domain protein K13735,K15125,K20276 - - 0.000000288 61.0
YYD2_k127_2269945_0 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004499 482.0
YYD2_k127_2269945_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000001216 233.0
YYD2_k127_2269945_2 aminopeptidase activity - - - 0.000452 53.0
YYD2_k127_2272698_0 Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system K02045 - 3.6.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009403 435.0
YYD2_k127_2272698_1 PFAM binding-protein-dependent transport systems inner membrane component K02047 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 385.0
YYD2_k127_2272698_2 Sulfate ABC transporter inner membrane subunit CysT K02046 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 364.0
YYD2_k127_2272698_3 COG1613 ABC-type sulfate transport system, periplasmic component K02048 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004232 276.0
YYD2_k127_2278303_0 threonyl-tRNA aminoacylation K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 6.38e-197 632.0
YYD2_k127_2278303_1 phosphorelay signal transduction system K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 437.0
YYD2_k127_2278303_2 Hypothetical methyltransferase K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003399 292.0
YYD2_k127_2278303_3 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.0000000000000000000000000000000000000000000000000006124 205.0
YYD2_k127_2278303_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000003026 75.0
YYD2_k127_2278303_5 - - - - 0.0000000006067 67.0
YYD2_k127_2278303_6 DNA-binding transcription factor activity K03892 - - 0.0000001919 57.0
YYD2_k127_229656_0 PFAM glycosyl transferase family 9 K02843 - - 0.00000000000000000000000000000004606 138.0
YYD2_k127_229656_1 PFAM MgtC SapB transporter K07507 - - 0.00000000000000000000000000001346 126.0
YYD2_k127_229656_2 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.00000000000000000000000000003695 119.0
YYD2_k127_229656_3 - - - - 0.00000000000000000005663 95.0
YYD2_k127_229656_4 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.000000002678 61.0
YYD2_k127_2309472_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004355 480.0
YYD2_k127_23223_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 357.0
YYD2_k127_23223_1 Bacterial regulatory proteins, tetR family K09017 - - 0.000000000000001962 84.0
YYD2_k127_2323808_0 glycyl-radical enzyme activating activity K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009051 478.0
YYD2_k127_2323808_1 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000009627 179.0
YYD2_k127_2323808_2 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin - - - 0.000000000000000000000000000000003303 144.0
YYD2_k127_2323808_3 SpoU rRNA Methylase family K00556 - 2.1.1.34 0.000000000000000000001554 109.0
YYD2_k127_2323808_4 LVIVD repeat-containing protein - - - 0.0004256 54.0
YYD2_k127_2323808_5 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.0005606 53.0
YYD2_k127_2325779_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004639 611.0
YYD2_k127_2325779_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004758 472.0
YYD2_k127_2325779_2 Competence-damaged protein K03742 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000335 272.0
YYD2_k127_2325779_3 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000001148 224.0
YYD2_k127_2325779_4 LigT like Phosphoesterase K01975 - 3.1.4.58 0.0000000000000000000000006692 116.0
YYD2_k127_2325779_5 phosphatidylglycerophosphatase activity K01095 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0030258,GO:0031224,GO:0031226,GO:0032026,GO:0042221,GO:0042577,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046839,GO:0050896,GO:0071704,GO:0071944,GO:0090407,GO:1901576 3.1.3.27 0.0000000000000000000001319 110.0
YYD2_k127_2325779_6 Regulatory protein RecX K03565 - - 0.00007225 51.0
YYD2_k127_2325779_7 YbaB/EbfC DNA-binding family K09747 - - 0.0002643 43.0
YYD2_k127_2344536_0 DoxX K15977 - - 0.000000000000000000000000000000000000000000001099 169.0
YYD2_k127_2344536_1 - - - - 0.0000000000000000000000000000000001846 141.0
YYD2_k127_2344536_2 DinB family - - - 0.000000000000000000000000004066 113.0
YYD2_k127_2344934_0 Peptidoglycan-synthase activator LpoB K07337 - - 0.000000000000000000000000000000000000000000000000000001869 199.0
YYD2_k127_2344934_1 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000001244 160.0
YYD2_k127_2344934_2 glycolate biosynthetic process K00817,K11777 - 2.6.1.9 0.0000000000000000000000000005109 121.0
YYD2_k127_2344934_3 protein conserved in bacteria K09859 - - 0.0000000004001 73.0
YYD2_k127_2359241_0 Glyceraldehyde-3-phosphate dehydrogenase K00150 - 1.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 441.0
YYD2_k127_2359241_1 gtp cyclohydrolase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000001146 260.0
YYD2_k127_2359241_2 Protein of unknown function (DUF2723) - - - 0.00000000000000000000000000000000000000000000000000000000000004745 234.0
YYD2_k127_2359241_3 DHHA1 domain K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000003043 133.0
YYD2_k127_2359241_4 Belongs to the eIF-2B alpha beta delta subunits family - - - 0.00000000000000000000000002199 124.0
YYD2_k127_2359241_5 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K20974 - 2.7.13.3 0.0000000000000007107 90.0
YYD2_k127_2359747_0 - - - - 0.00000000000000000000000000000000000000000000000000000000005688 212.0
YYD2_k127_2359747_1 - - - - 0.0000000000000000000000209 106.0
YYD2_k127_2359747_2 PFAM thioesterase superfamily - - - 0.00000000001487 64.0
YYD2_k127_240992_0 GDP-mannose 4,6 dehydratase K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 474.0
YYD2_k127_240992_1 NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 348.0
YYD2_k127_240992_2 transferase activity, transferring glycosyl groups K00721,K03820 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000567 310.0
YYD2_k127_240992_3 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001307 301.0
YYD2_k127_240992_4 Glycosyltransferase like family 2 K03606,K07011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002599 266.0
YYD2_k127_240992_5 Protein of unknown function (DUF2723) K16928 - - 0.0000000000000000000000000000000000000000000000000000006424 210.0
YYD2_k127_2415083_0 flavin-nucleotide-binding protein structurally related to pyridoxine 5-phosphate oxidase K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005878 608.0
YYD2_k127_2415083_1 pyridoxamine 5-phosphate - - - 0.000000000000000000000000000000000000000000000000004973 185.0
YYD2_k127_2415083_2 Cytochrome c - - - 0.000000000000008782 74.0
YYD2_k127_2420599_0 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008815 341.0
YYD2_k127_2420599_1 serine-type peptidase activity K06978 - - 0.00000000000000000000000000000000001701 150.0
YYD2_k127_2420599_2 extracellular matrix structural constituent - - - 0.0000000008955 64.0
YYD2_k127_2421837_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000001367 202.0
YYD2_k127_2421837_1 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000002094 192.0
YYD2_k127_2440349_0 domain, Protein - - - 0.0000007979 63.0
YYD2_k127_2443918_0 Cytochrome C assembly protein K02198,K04016 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0018193,GO:0018198,GO:0018378,GO:0019538,GO:0020037,GO:0022607,GO:0031224,GO:0031226,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0046906,GO:0048037,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 578.0
YYD2_k127_2443918_1 ABC transporter K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000007063 199.0
YYD2_k127_2443918_2 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000001939 96.0
YYD2_k127_2443918_3 - - - - 0.0002978 51.0
YYD2_k127_2445822_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 396.0
YYD2_k127_2445822_1 peptidase activity, acting on L-amino acid peptides K05996 - 3.4.17.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000097 353.0
YYD2_k127_2445822_2 Stage II sporulation protein K06381 - - 0.000000000000000000000000000000000000000000000000000001507 214.0
YYD2_k127_2445822_3 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000001225 146.0
YYD2_k127_2445822_4 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000002031 147.0
YYD2_k127_2456245_0 adenosylhomocysteinase activity K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005173 584.0
YYD2_k127_2456245_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005565 496.0
YYD2_k127_2456245_10 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000001849 85.0
YYD2_k127_2456245_11 Outer membrane lipoprotein K05807 - - 0.000000000001393 80.0
YYD2_k127_2456245_12 PFAM PTS system mannose fructose sorbose family IID component K02796 - - 0.00000001794 65.0
YYD2_k127_2456245_2 Ftsk_gamma K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 477.0
YYD2_k127_2456245_3 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K08483 - 2.7.3.9,2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 447.0
YYD2_k127_2456245_4 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 366.0
YYD2_k127_2456245_5 Nucleotidyl transferase K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005746 314.0
YYD2_k127_2456245_6 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000003853 188.0
YYD2_k127_2456245_7 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000002144 149.0
YYD2_k127_2456245_8 Bacterial phospho-glucose isomerase C-terminal SIS domain K15916 - 5.3.1.8,5.3.1.9 0.00000000000000000000000008756 124.0
YYD2_k127_2456245_9 PTS HPr component phosphorylation site K11189 - - 0.000000000000000000002641 96.0
YYD2_k127_2457973_0 PFAM carboxyl transferase K01615 - 4.1.1.70 2.248e-253 792.0
YYD2_k127_2457973_1 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 507.0
YYD2_k127_2457973_2 ligase activity, forming carbon-carbon bonds K00627,K00645,K01572,K02160 - 2.3.1.12,2.3.1.39,4.1.1.3 0.000000000000000005201 91.0
YYD2_k127_2465387_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008429 432.0
YYD2_k127_2465387_1 SAICAR synthetase K01923 - 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005289 276.0
YYD2_k127_2465387_2 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.00000000000000000000000000000000000000000000001442 196.0
YYD2_k127_2465387_3 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000000000000000004554 125.0
YYD2_k127_2465387_4 TonB-dependent receptor - - - 0.000000000000000000000008183 117.0
YYD2_k127_2465387_5 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000008082 101.0
YYD2_k127_2467133_0 CHASE K02488,K21009 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000009559 209.0
YYD2_k127_2478320_0 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004612 447.0
YYD2_k127_2478320_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000003124 232.0
YYD2_k127_2478320_2 - - - - 0.000000000000000000000000000000000000001088 168.0
YYD2_k127_2478320_3 Acid phosphatase homologues - - - 0.0000000003033 70.0
YYD2_k127_24878_0 Carbon starvation protein K06200 - - 2.842e-212 673.0
YYD2_k127_24878_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006423 443.0
YYD2_k127_24878_2 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 339.0
YYD2_k127_24878_3 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000000000000000005308 214.0
YYD2_k127_24878_4 TIGRFAM histidinol-phosphate phosphatase HisN, inositol monophosphatase family K01092,K05602 - 3.1.3.15,3.1.3.25 0.000000000000000000000000000000000000000000000000000000002598 211.0
YYD2_k127_24878_5 Bacterial-like globin K06886 - - 0.000000000000000000000000000000000000000000000004484 184.0
YYD2_k127_24878_6 Belongs to the peptidase S33 family K01259,K18457 - 3.4.11.5,3.5.1.101 0.0000000000000003757 84.0
YYD2_k127_2494005_0 The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddB nuclease domain is not required for chi fragment generation K16899 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000001923 261.0
YYD2_k127_2494005_1 ATP-dependent helicase nuclease subunit A K16898 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360 3.6.4.12 0.0000000000000000000000000000000000000000000000000000111 211.0
YYD2_k127_2501773_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002534 332.0
YYD2_k127_250417_0 alpha beta K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 403.0
YYD2_k127_250417_1 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000003264 190.0
YYD2_k127_2506517_0 COG1525 Micrococcal nuclease (thermonuclease) homologs K01174 - 3.1.31.1 0.000005409 56.0
YYD2_k127_2510792_0 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000002498 216.0
YYD2_k127_2510792_1 B3/4 domain - - - 0.0000000000000000000000000000000001016 151.0
YYD2_k127_2510792_2 Methyltransferase type 11 - - - 0.0000000000000000006416 98.0
YYD2_k127_2511865_0 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000009649 209.0
YYD2_k127_2511865_1 CHASE - - - 0.0000000000000000316 93.0
YYD2_k127_2541758_0 transcriptional regulator K13572 - - 0.000000000000000000000000000008836 134.0
YYD2_k127_2541758_1 - - - - 0.00001727 55.0
YYD2_k127_2548048_0 PFAM peptidase S58, DmpA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001559 312.0
YYD2_k127_2548048_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 303.0
YYD2_k127_2548146_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002192 285.0
YYD2_k127_2567628_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000003224 177.0
YYD2_k127_2567628_1 CHRD domain - - - 0.000000000000000000000000000004287 132.0
YYD2_k127_258275_0 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008079 289.0
YYD2_k127_258275_1 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000004567 220.0
YYD2_k127_258275_2 Domain of unknown function (DUF4162) K01990 - - 0.0000000000000000000000000000000000000000000000000001029 192.0
YYD2_k127_258275_3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000000000000000000000000000000000000000006841 170.0
YYD2_k127_258275_4 Glycosyl transferase 4-like domain - - - 0.0000000000000000428 96.0
YYD2_k127_2598394_0 Glutamate-cysteine ligase family 2(GCS2) - - - 3.839e-215 689.0
YYD2_k127_2598394_1 Putative esterase K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 409.0
YYD2_k127_2598394_2 Belongs to the D-alanine--D-alanine ligase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 392.0
YYD2_k127_2598394_3 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009217 315.0
YYD2_k127_2599158_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004541 569.0
YYD2_k127_2599158_1 PFAM Class I peptide chain release factor K15034 - - 0.00000000000000000007688 93.0
YYD2_k127_2599158_2 Fic/DOC family - - - 0.0000005152 61.0
YYD2_k127_2601455_0 - - - - 0.00000000000000000000000000000000000000000000000000000001096 203.0
YYD2_k127_2601455_1 - - - - 0.0000000000000000000000000000000000000002175 164.0
YYD2_k127_2601455_2 Ester cyclase - - - 0.000000000000001822 86.0
YYD2_k127_2606571_0 export protein - - - 0.00000000000000000001024 106.0
YYD2_k127_2616588_0 Transglycosylase K05366 GO:0003674,GO:0005488,GO:0005515,GO:0042802 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005746 508.0
YYD2_k127_2616588_1 Pyrimidine nucleoside phosphorylase C-terminal domain K00756 - 2.4.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005266 342.0
YYD2_k127_2627671_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009203 262.0
YYD2_k127_2627671_1 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002928 253.0
YYD2_k127_2640418_0 Glycosyl transferases group 1 K13057 - 2.4.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 552.0
YYD2_k127_2640418_1 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 395.0
YYD2_k127_2640418_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000009883 203.0
YYD2_k127_2640418_3 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000003189 213.0
YYD2_k127_2640418_4 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.00000000000000000000000000000000000004991 156.0
YYD2_k127_2640418_5 Sodium/hydrogen exchanger family K11105 - - 0.0000000000000005378 79.0
YYD2_k127_2648900_0 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000002497 179.0
YYD2_k127_2648900_1 Squalene/phytoene synthase K00801 - 2.5.1.21 0.00000000000000000000000000000000000000001606 171.0
YYD2_k127_2648900_2 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 0.00000000000000000000000000000000001204 149.0
YYD2_k127_2662064_0 TOBE domain K02017 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000001805 254.0
YYD2_k127_2662064_1 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000001039 201.0
YYD2_k127_2662064_2 Bacterial extracellular solute-binding protein K02020 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0030973,GO:0031975,GO:0042597,GO:0043167,GO:0043168,GO:0044464 - 0.0000000000000000000000000000001381 132.0
YYD2_k127_2662064_3 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000003418 83.0
YYD2_k127_2662064_4 extracellular matrix structural constituent - - - 0.0000001179 61.0
YYD2_k127_2684497_0 Aldo Keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 355.0
YYD2_k127_2684497_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000001368 135.0
YYD2_k127_2684497_2 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 0.000000000000000000000000000001403 122.0
YYD2_k127_2684497_3 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 0.0006973 45.0
YYD2_k127_2684499_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 1.555e-265 828.0
YYD2_k127_2684499_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 361.0
YYD2_k127_2684499_2 Aldo/keto reductase family - - - 0.000000000000000000000000001319 115.0
YYD2_k127_268674_0 ATPase domain of DNA mismatch repair MUTS family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006272 471.0
YYD2_k127_268674_1 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.0000000000000000000000000000000000000000000000000000000000000003655 228.0
YYD2_k127_2686819_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004226 326.0
YYD2_k127_2686819_1 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000001288 246.0
YYD2_k127_2686819_2 SurA N-terminal domain K03769 - 5.2.1.8 0.00000000000000000000000000000000000000004847 164.0
YYD2_k127_269465_0 DNA polymerase type-B family K02336 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006479 295.0
YYD2_k127_269465_1 DinB family - - - 0.0000000000000000000000000000000000000000000135 167.0
YYD2_k127_269465_2 PFAM response regulator receiver K02483,K07658,K07668 - - 0.000000000000000000000000000000000004498 144.0
YYD2_k127_269465_3 PFAM GGDEF domain containing protein - - - 0.00000001946 57.0
YYD2_k127_2698051_0 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000001343 211.0
YYD2_k127_2698051_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000001419 199.0
YYD2_k127_2698051_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000003305 145.0
YYD2_k127_2698051_3 ADP-ribosylation factor family K06883 - - 0.000000000000000000006335 105.0
YYD2_k127_2709508_0 PglZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 531.0
YYD2_k127_2709508_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006801 513.0
YYD2_k127_2709508_10 Catalyzes the conversion of dihydroorotate to orotate with NAD( ) as electron acceptor K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 319.0
YYD2_k127_2709508_11 PFAM Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000002501 234.0
YYD2_k127_2709508_12 WxcM-like, C-terminal K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000002731 219.0
YYD2_k127_2709508_13 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000006112 192.0
YYD2_k127_2709508_14 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( K02823 - - 0.0000000000000000000000000000000000006799 150.0
YYD2_k127_2709508_15 nucleotide catabolic process - - - 0.000000000000000000000000000000000009269 151.0
YYD2_k127_2709508_16 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000000005717 124.0
YYD2_k127_2709508_17 PFAM Peptidase M22, glycoprotease K14742 - - 0.00000000000000000000000001848 123.0
YYD2_k127_2709508_18 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000185 120.0
YYD2_k127_2709508_19 Glycosyl transferase family 4 - - - 0.0000000000000000002372 101.0
YYD2_k127_2709508_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 496.0
YYD2_k127_2709508_20 Tetratricopeptide repeat - - - 0.0000000003303 72.0
YYD2_k127_2709508_21 HEPN domain - - - 0.0000006511 57.0
YYD2_k127_2709508_3 Cys Met metabolism K01739,K01758 - 2.5.1.48,4.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 477.0
YYD2_k127_2709508_4 Pyridoxal-phosphate dependent enzyme K01697 - 4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006932 478.0
YYD2_k127_2709508_5 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744,K09774 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004456 445.0
YYD2_k127_2709508_6 Male sterility protein K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 391.0
YYD2_k127_2709508_7 Integral membrane sensor signal transduction histidine kinase K07709,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 316.0
YYD2_k127_2709508_8 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 313.0
YYD2_k127_2709508_9 Polysaccharide biosynthesis protein K01710,K01784 - 4.2.1.46,5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 306.0
YYD2_k127_2713284_0 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006931 341.0
YYD2_k127_2713284_1 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001537 248.0
YYD2_k127_2713284_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000003733 226.0
YYD2_k127_2713284_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000006104 217.0
YYD2_k127_2713284_4 - - - - 0.0000000000000000000000000000000000000000000000001327 185.0
YYD2_k127_2713284_5 Uncharacterised protein family UPF0047 - - - 0.0000000000000004059 77.0
YYD2_k127_2719303_0 citrate CoA-transferase activity K01643 - 2.8.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 601.0
YYD2_k127_2728237_0 glutamine synthetase K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000003866 266.0
YYD2_k127_2728237_1 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K02548 - 2.5.1.74 0.000000000000000000000000000000000000000000000000000000002416 211.0
YYD2_k127_2728237_2 extracellular matrix structural constituent - - - 0.0000002914 59.0
YYD2_k127_2738764_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008202 283.0
YYD2_k127_276841_0 response regulator K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002836 250.0
YYD2_k127_276841_1 Esterase-like activity of phytase - - - 0.000000000000002445 87.0
YYD2_k127_278852_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 318.0
YYD2_k127_278852_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006225,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009163,GO:0009165,GO:0009185,GO:0009188,GO:0009193,GO:0009194,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0033862,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042455,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046048,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046872,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 307.0
YYD2_k127_278852_2 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 304.0
YYD2_k127_278852_3 Ribosome recycling factor K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000001352 219.0
YYD2_k127_278852_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000003782 214.0
YYD2_k127_278852_5 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000009123 185.0
YYD2_k127_278852_6 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000001025 189.0
YYD2_k127_278852_7 Ribosomal protein S9/S16 K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000005595 135.0
YYD2_k127_278852_8 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000002202 139.0
YYD2_k127_279821_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 2.434e-230 722.0
YYD2_k127_279821_1 dienelactone hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 341.0
YYD2_k127_279821_2 Male sterility protein K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000008571 234.0
YYD2_k127_279821_3 PFAM YbaK prolyl-tRNA synthetase associated region K19055 - - 0.0000000000000000000000000000000000000000000000000000008242 199.0
YYD2_k127_279821_4 cytochrome c nitrite reductase K15876 - - 0.00000000000000000000000000000000000000000000000000001358 196.0
YYD2_k127_279821_5 alpha beta - - - 0.000000000000000000000000000000000000000004013 173.0
YYD2_k127_279821_6 Domain of unknown function (DUF1731) K07071 - - 0.0000000000000000000000000005167 120.0
YYD2_k127_279821_7 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000000000001054 82.0
YYD2_k127_279821_8 peptidase activity, acting on L-amino acid peptides - - - 0.000002405 60.0
YYD2_k127_279821_9 TonB-dependent receptor K01179 - 3.2.1.4 0.00002369 57.0
YYD2_k127_2809756_0 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 391.0
YYD2_k127_2809756_1 PFAM ATP-binding region, ATPase domain protein K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000003148 207.0
YYD2_k127_2809756_2 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.00000000000001749 75.0
YYD2_k127_2809756_3 response regulator - - - 0.00009791 50.0
YYD2_k127_2813540_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 4.542e-232 726.0
YYD2_k127_2813540_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000001144 243.0
YYD2_k127_2813540_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 0.00000000000000000000000000000000000000000007738 163.0
YYD2_k127_2813540_3 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000009921 134.0
YYD2_k127_2813540_4 Redoxin K03564 - 1.11.1.15 0.000000000000000000000000009198 112.0
YYD2_k127_2813540_5 Urate oxidase N-terminal - - - 0.000008018 58.0
YYD2_k127_281443_0 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 472.0
YYD2_k127_281443_1 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006151 406.0
YYD2_k127_281443_2 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 390.0
YYD2_k127_281443_3 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07710 - 2.7.13.3 0.00000000000000000000000000000000000000000000000002599 194.0
YYD2_k127_281443_4 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000001906 168.0
YYD2_k127_281443_5 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000004634 137.0
YYD2_k127_281443_6 HIT domain K01518,K02503,K19710,K21220 - 2.5.1.3,2.7.7.53,3.6.1.17 0.0000000000000000000000000000001334 132.0
YYD2_k127_281443_7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000002458 87.0
YYD2_k127_281650_0 PFAM Cytochrome b b6 domain - - - 1.994e-199 641.0
YYD2_k127_281650_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003651 564.0
YYD2_k127_281650_2 electron transfer activity K03615 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003595 367.0
YYD2_k127_281650_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 293.0
YYD2_k127_281650_4 ethanolamine catabolic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001359 271.0
YYD2_k127_281650_5 Cytochrome c - - - 0.000000000000000000000000000000000008987 143.0
YYD2_k127_281650_6 PFAM Rieske 2Fe-2S domain K02636,K03886 - 1.10.9.1 0.00000000000000000000000001839 124.0
YYD2_k127_281990_0 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 326.0
YYD2_k127_281990_1 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001575 298.0
YYD2_k127_281990_2 TIGRFAM phosphonate ABC transporter, inner membrane subunit K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001722 273.0
YYD2_k127_2836824_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1187.0
YYD2_k127_2836824_1 PFAM NAD-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005549 336.0
YYD2_k127_2842503_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1169.0
YYD2_k127_2842503_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008649 382.0
YYD2_k127_2842503_2 Mismatch repair ATPase (MutS family) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003566 340.0
YYD2_k127_2842503_3 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000005557 211.0
YYD2_k127_2842503_4 iron-sulfur cluster assembly K07400 - - 0.000000000000000000000000000000000000000000000005114 179.0
YYD2_k127_2842503_5 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 0.00000000000000000000000000000000000434 147.0
YYD2_k127_2842503_6 PFAM outer membrane efflux protein - - - 0.000000000003578 79.0
YYD2_k127_2842722_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3,2.1.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 342.0
YYD2_k127_2842722_1 Phage integrase, N-terminal SAM-like domain K03733,K04763 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000001596 229.0
YYD2_k127_2842722_2 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000001669 179.0
YYD2_k127_2842722_3 Bacterial Ig-like domain - - - 0.0003952 53.0
YYD2_k127_2855293_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002719 383.0
YYD2_k127_2855293_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000002339 227.0
YYD2_k127_2855293_2 beta-1,4-mannooligosaccharide phosphorylase - - - 0.000000000000000000000000000000000000000000000000000000000452 203.0
YYD2_k127_2855293_3 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000000000000000007194 131.0
YYD2_k127_2855293_4 cellular manganese ion homeostasis - - - 0.00000000000000000000001471 108.0
YYD2_k127_286329_0 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 404.0
YYD2_k127_286329_1 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000878 286.0
YYD2_k127_286329_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.00007723 49.0
YYD2_k127_2884956_0 Belongs to the LarC family K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001462 289.0
YYD2_k127_2884956_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000002439 228.0
YYD2_k127_2884956_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000002742 177.0
YYD2_k127_2884956_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000001829 125.0
YYD2_k127_2884956_4 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530,K05788 - - 0.000000000000000000000000003705 114.0
YYD2_k127_2891117_0 methionyl-tRNA aminoacylation K01874,K01890,K04566,K06878 GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.10,6.1.1.20,6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 541.0
YYD2_k127_2891117_1 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003019 266.0
YYD2_k127_289839_0 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000008595 246.0
YYD2_k127_289839_1 COG0720 6-pyruvoyl-tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000005619 157.0
YYD2_k127_289839_2 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843,K02849 - - 0.000001769 57.0
YYD2_k127_2918478_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000002476 270.0
YYD2_k127_2918478_1 PFAM thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000235 234.0
YYD2_k127_2918478_2 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000002869 223.0
YYD2_k127_2918478_3 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000006942 190.0
YYD2_k127_2924998_0 D12 class N6 adenine-specific DNA methyltransferase K07318 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 362.0
YYD2_k127_2924998_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 GO:0003674,GO:0003824,GO:0003887,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000004779 231.0
YYD2_k127_293135_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000001203 249.0
YYD2_k127_293135_1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 - - 0.000000000000000000000000000000000000000000000000000007887 199.0
YYD2_k127_293135_2 ABC-type uncharacterized transport system K01992 - - 0.000000000000000000000000000000000004931 158.0
YYD2_k127_293135_3 COG2059 Chromate transport protein ChrA K07240 - - 0.00000000000000000000000000000000001252 142.0
YYD2_k127_293135_4 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000001576 147.0
YYD2_k127_293135_5 CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000003776 103.0
YYD2_k127_293135_6 PFAM S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0001328 53.0
YYD2_k127_2943929_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 370.0
YYD2_k127_2943929_1 Penicillin-binding Protein dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005945 326.0
YYD2_k127_2960505_0 ATP:ADP antiporter activity K01932,K03301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 394.0
YYD2_k127_2960505_1 SnoaL-like domain - - - 0.00000000000000000000000000000000000001047 148.0
YYD2_k127_2960505_2 dihydrofolate reductase activity - - - 0.0000000000000000000000007462 103.0
YYD2_k127_299299_0 acyl-coa dehydrogenase K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003537 429.0
YYD2_k127_299299_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K03793 - 1.5.1.33 0.00000000000000000000000000000000000000000000000001413 188.0
YYD2_k127_299299_2 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000003689 177.0
YYD2_k127_299299_3 NUDIX domain - - - 0.00000000000000000000000000002185 130.0
YYD2_k127_299299_4 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000007797 92.0
YYD2_k127_299299_5 glycolate biosynthetic process K00817,K11777 - 2.6.1.9 0.00003133 51.0
YYD2_k127_2995088_0 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000989 419.0
YYD2_k127_2995088_1 major pilin protein fima - - - 0.000000000000000000000000000000000000000000000000000000000004292 216.0
YYD2_k127_2995088_2 AhpC/TSA family K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000001667 181.0
YYD2_k127_2995088_3 Metal-dependent hydrolase - - - 0.000000000000000000000000000000002523 146.0
YYD2_k127_3011640_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000000000000000000002828 240.0
YYD2_k127_3011640_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000002345 210.0
YYD2_k127_3040098_0 drug transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004365 358.0
YYD2_k127_3040098_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000001408 233.0
YYD2_k127_3040098_2 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000003498 182.0
YYD2_k127_3051376_0 nucleotide-excision repair K03702 GO:0002682,GO:0002684,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006950,GO:0008150,GO:0009314,GO:0009380,GO:0009605,GO:0009607,GO:0009628,GO:0016020,GO:0032991,GO:0035821,GO:0042802,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0044424,GO:0044464,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0071944,GO:0075136,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 535.0
YYD2_k127_3051376_1 Quinolinate phosphoribosyl transferase, N-terminal domain K00767 - 2.4.2.19 0.00000000000000000000000000000000000000000000000002762 198.0
YYD2_k127_3055953_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 2.513e-238 761.0
YYD2_k127_3055953_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000003021 268.0
YYD2_k127_3055953_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.000000000000000000000000000000000000000000000000000000000002203 218.0
YYD2_k127_3055953_3 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000004697 211.0
YYD2_k127_3055953_4 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000009436 128.0
YYD2_k127_3055953_5 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075,K15780 - 2.4.2.8,6.3.4.19 0.000000784 53.0
YYD2_k127_3066347_0 Oxidoreductase molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 444.0
YYD2_k127_3066347_1 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.00000000000001767 86.0
YYD2_k127_3071190_0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000002366 121.0
YYD2_k127_3072777_0 Type II and III secretion system protein K02666 - - 0.00000000000000000000000000000000000000000000000000000000000000007386 242.0
YYD2_k127_3072777_1 Belongs to the 5'-nucleotidase family K01119 - 3.1.3.6,3.1.4.16 0.00005643 54.0
YYD2_k127_3072777_2 Histidine kinase - - - 0.0002409 54.0
YYD2_k127_307306_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 561.0
YYD2_k127_307306_1 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 299.0
YYD2_k127_307306_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000001853 118.0
YYD2_k127_308062_0 KR domain - - - 0.000000000000000000000000000000000000005078 153.0
YYD2_k127_308062_1 TIGRFAM Hopanoid biosynthesis associated radical SAM protein HpnH - - - 0.00000000000000000000004352 114.0
YYD2_k127_3090941_0 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.000000000000000000000396 109.0
YYD2_k127_3090941_1 ATP:ADP antiporter activity K01932,K03301 - - 0.0000000000006027 71.0
YYD2_k127_3090941_2 antisigma factor binding K04749 - - 0.000004993 57.0
YYD2_k127_3129282_0 Aminotransferase class-V K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 330.0
YYD2_k127_3129282_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000001328 109.0
YYD2_k127_3129282_2 AntiSigma factor - - - 0.0002952 53.0
YYD2_k127_313103_0 Putative modulator of DNA gyrase K03568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004709 471.0
YYD2_k127_313103_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 400.0
YYD2_k127_314863_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000002828 199.0
YYD2_k127_314863_1 HlyD family secretion protein - - - 0.00000000000000000000000000000000000000000000009579 193.0
YYD2_k127_314863_2 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000006491 177.0
YYD2_k127_314863_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000005746 110.0
YYD2_k127_314863_4 FemAB family - - - 0.000000000000000002722 97.0
YYD2_k127_3163363_0 Aldehyde dehydrogenase family K00128 - 1.2.1.3 7.325e-222 698.0
YYD2_k127_3163363_1 Belongs to the thioredoxin family K03671 - - 0.000000000001691 73.0
YYD2_k127_3170731_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 385.0
YYD2_k127_3170731_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 377.0
YYD2_k127_3170731_2 PFAM ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001526 293.0
YYD2_k127_3170731_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002239 275.0
YYD2_k127_3170731_4 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000001734 184.0
YYD2_k127_3170731_5 Squalene--hopene cyclase - - - 0.000000000000000000000000000000000000000000001769 172.0
YYD2_k127_3170731_6 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000001143 115.0
YYD2_k127_3170731_7 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.00007535 56.0
YYD2_k127_3241825_0 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 1.75e-199 630.0
YYD2_k127_3241825_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007343 544.0
YYD2_k127_3241825_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 403.0
YYD2_k127_3241825_3 Catalyzes the dephosphorylation of D,L-glyceraldehyde 3- phosphate in vitro K07025 - - 0.000000000000000000000000000003663 128.0
YYD2_k127_3241825_4 - - - - 0.000000000000000000000001108 106.0
YYD2_k127_3241825_5 peptidyl-tyrosine sulfation - - - 0.0007278 51.0
YYD2_k127_3247840_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 7.194e-321 996.0
YYD2_k127_3247840_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030312,GO:0030955,GO:0031004,GO:0031224,GO:0031226,GO:0031420,GO:0032991,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090533,GO:0090662,GO:0098533,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 497.0
YYD2_k127_3247840_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031004,GO:0031224,GO:0032991,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044425,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090533,GO:0090662,GO:0098533,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.12 0.000000000000000000000000000000000000000000000000000000000000002306 222.0
YYD2_k127_3248778_0 Belongs to the PEP-utilizing enzyme family K01006,K22424 - 2.7.3.13,2.7.9.1 0.0 1105.0
YYD2_k127_3248778_1 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003891 251.0
YYD2_k127_3248778_10 LVIVD repeat K01179 - 3.2.1.4 0.0003837 53.0
YYD2_k127_3248778_2 Putative glutamine amidotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000005696 240.0
YYD2_k127_3248778_3 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000006727 109.0
YYD2_k127_3248778_4 Encoded by - - - 0.000000000000004201 89.0
YYD2_k127_3248778_5 - - - - 0.000000000004477 79.0
YYD2_k127_3248778_6 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.00000000005669 73.0
YYD2_k127_3248778_7 aminopeptidase N - - - 0.000000002336 70.0
YYD2_k127_3248778_8 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000007288 59.0
YYD2_k127_3248778_9 COG3209 Rhs family protein - - - 0.00002438 58.0
YYD2_k127_3251442_0 aconitate hydratase K01681 - 4.2.1.3 5.08e-321 1000.0
YYD2_k127_3251442_1 Major pilin protein fimA - - - 0.00000000000000000000000000000000002025 145.0
YYD2_k127_3251442_2 enzyme binding K00567,K07443 - 2.1.1.63 0.000000000000000000000000000006746 124.0
YYD2_k127_3255365_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006145 273.0
YYD2_k127_3255365_1 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000003811 152.0
YYD2_k127_325603_0 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007627 436.0
YYD2_k127_325603_1 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000004161 173.0
YYD2_k127_3256162_0 PFAM Type II secretion system protein E K02454,K02504,K02652 - - 1.112e-248 779.0
YYD2_k127_3256162_1 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002298 602.0
YYD2_k127_3256162_2 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007159 544.0
YYD2_k127_3256162_3 PFAM Type II secretion system F domain K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000277 464.0
YYD2_k127_3256162_4 Two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 459.0
YYD2_k127_3256162_5 phosphorelay sensor kinase activity K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001041 287.0
YYD2_k127_3256162_6 Acetyl-CoA carboxylase, biotin carboxyl carrier protein K01571,K01960 - 4.1.1.3,6.4.1.1 0.00000000000000000000000000000000003892 144.0
YYD2_k127_3256162_7 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000000958 120.0
YYD2_k127_3256345_0 4-amino-4-deoxy-L-arabinose transferase activity K13687 - - 0.000000000000000000000000000000000009236 150.0
YYD2_k127_3256345_1 Putative cyclase K07130 - 3.5.1.9 0.0000000000000000000000000003172 126.0
YYD2_k127_3264782_0 AAA domain - - - 0.0000000000000000000000000000000000000000000000000002541 206.0
YYD2_k127_3264782_1 Rhomboid family K19225 - 3.4.21.105 0.0000000000000004639 92.0
YYD2_k127_3264782_2 Small Multidrug Resistance protein - - - 0.00000000000003989 79.0
YYD2_k127_3265534_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 6.223e-294 917.0
YYD2_k127_3265534_1 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 485.0
YYD2_k127_3265534_2 AIR carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008526 276.0
YYD2_k127_3265534_3 tRNA processing K06864 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009834 278.0
YYD2_k127_3274074_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009203 537.0
YYD2_k127_3274074_1 DHH family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001043 273.0
YYD2_k127_3274074_2 Polysaccharide biosynthesis C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000139 262.0
YYD2_k127_3274074_3 Bacterial extracellular solute-binding proteins, family 5 Middle K13893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005683 265.0
YYD2_k127_3274074_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000006448 218.0
YYD2_k127_3274074_6 Glycosyl transferase family 41 - - - 0.00006843 55.0
YYD2_k127_3279010_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 445.0
YYD2_k127_3279010_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 379.0
YYD2_k127_3279010_2 OsmC-like protein K04063 - - 0.000000000000000000000000000000000000000000000000000001577 197.0
YYD2_k127_3279010_3 PFAM Protein kinase domain - - - 0.00000000005219 76.0
YYD2_k127_3281463_0 PFAM Type II secretion system protein E K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 536.0
YYD2_k127_3281463_1 Type ii and iii secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000004601 221.0
YYD2_k127_3281463_2 Pilus assembly protein K02662 - - 0.00000000000000005046 93.0
YYD2_k127_3281463_4 PFAM Fimbrial assembly family protein K02663 - - 0.0005216 53.0
YYD2_k127_3282646_0 Mo-molybdopterin cofactor metabolic process K03148,K03636,K21029,K21147 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006732,GO:0006777,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009108,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0018130,GO:0019344,GO:0019538,GO:0019637,GO:0019720,GO:0019752,GO:0020012,GO:0030312,GO:0030682,GO:0042783,GO:0043170,GO:0043207,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0061605,GO:0070566,GO:0071704,GO:0071944,GO:0075136,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.73,2.7.7.80,2.8.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 561.0
YYD2_k127_3282646_1 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 552.0
YYD2_k127_3282646_10 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.000009668 53.0
YYD2_k127_3282646_11 ompA family - - - 0.00001072 57.0
YYD2_k127_3282646_12 TIGRFAM TonB family protein - - - 0.00007762 55.0
YYD2_k127_3282646_13 ompA family - - - 0.0001029 54.0
YYD2_k127_3282646_14 protein conserved in bacteria - - - 0.000829 53.0
YYD2_k127_3282646_2 1-Cys peroxiredoxin K11188 - 1.11.1.15,1.11.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000306 321.0
YYD2_k127_3282646_3 Pyridoxal-phosphate dependent enzyme K12339,K21148 - 2.5.1.113,2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007593 322.0
YYD2_k127_3282646_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000005202 131.0
YYD2_k127_3282646_5 Protein of unknown function, DUF393 - - - 0.0000000000000000000000004098 109.0
YYD2_k127_3282646_6 metal-dependent protease of the PAD1 JAB1 superfamily - - - 0.0000000000000000000000007745 111.0
YYD2_k127_3282646_7 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.000000000000000000000001817 119.0
YYD2_k127_3282646_8 MotA TolQ ExbB proton channel K03561 - - 0.00000000000000000001592 105.0
YYD2_k127_3282646_9 Biopolymer transport protein ExbD/TolR K03560 - - 0.000000005469 64.0
YYD2_k127_3284957_0 Peptidase family M1 domain K01992 - - 2.866e-295 944.0
YYD2_k127_3284957_1 (ABC) transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004207 404.0
YYD2_k127_3284957_2 - - - - 0.00000000000000000000000000000000007145 145.0
YYD2_k127_3284957_3 Domain of unknown function (DU1801) - - - 0.0000000000000002691 80.0
YYD2_k127_3288898_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 466.0
YYD2_k127_3288898_1 Highly conserved protein containing a thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000000123 241.0
YYD2_k127_3288898_2 - - - - 0.000000000005953 66.0
YYD2_k127_3288898_3 pfkB family carbohydrate kinase K10710 - 2.7.1.218 0.0000000001985 68.0
YYD2_k127_3293381_0 lactate metabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003301 483.0
YYD2_k127_3293381_1 PFAM Cysteine-rich secretory protein family - - - 0.000000000000000000000000000000000000000000000000003397 191.0
YYD2_k127_3293381_2 DsrC like protein K11179 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000002134 152.0
YYD2_k127_3293381_3 nitrate reductase activity - - - 0.0000000000000000000000000004081 122.0
YYD2_k127_3293381_4 Evidence 5 No homology to any previously reported sequences - - - 0.000003941 55.0
YYD2_k127_3304931_0 Domain of unknown function (DUF4386) - - - 0.000000000000000000000000000000000000000000000000000004098 198.0
YYD2_k127_3304931_1 cellulose binding - - - 0.0000000000000000000000000000000000000006969 168.0
YYD2_k127_3304931_2 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000008476 116.0
YYD2_k127_3304931_3 Alkaline phosphatase - - - 0.0000000000000000008199 100.0
YYD2_k127_3304931_4 - - - - 0.000000000000000002734 97.0
YYD2_k127_3304931_5 guanyl-nucleotide exchange factor activity - - - 0.0000001632 64.0
YYD2_k127_3310703_0 NAD(P) transhydrogenase beta subunit K00325 - 1.6.1.2 5.77e-203 641.0
YYD2_k127_3310703_1 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 438.0
YYD2_k127_3310703_2 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309 - - 0.00000000000000000000000000000000000000000000000000004971 194.0
YYD2_k127_3310703_3 Disulphide bond corrector protein DsbC K04084 - 1.8.1.8 0.00000000000000000000000000000002865 146.0
YYD2_k127_3310703_4 NADP transhydrogenase K00324 - 1.6.1.2 0.0000000000000000000000000004379 120.0
YYD2_k127_3310703_5 Redoxin - - - 0.00001214 56.0
YYD2_k127_3339538_0 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 478.0
YYD2_k127_3339538_1 adenosine deaminase K01488,K21053 - 3.5.4.2,3.5.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 311.0
YYD2_k127_3345916_0 oligosaccharyl transferase activity - - - 0.000000000000000000000000004165 127.0
YYD2_k127_3356342_0 intracellular protease K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000002987 169.0
YYD2_k127_3356342_1 - - - - 0.0000000000000000000000000000000005035 146.0
YYD2_k127_3356342_2 COG0277 FAD FMN-containing dehydrogenases K00102 - 1.1.2.4 0.0004317 43.0
YYD2_k127_3367534_0 GTP-binding protein TypA K06207 - - 2.29e-302 937.0
YYD2_k127_3367534_1 FeS assembly protein SufB K07033,K09014 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360 - 1.913e-220 705.0
YYD2_k127_3367534_10 2 iron, 2 sulfur cluster binding - - - 0.00000000000000000000000008402 114.0
YYD2_k127_3367534_11 protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.0000000000000000000000001567 119.0
YYD2_k127_3367534_12 of nitrite reductase and ring-hydroxylating K05710 - - 0.0000000000000000000000006505 111.0
YYD2_k127_3367534_13 Pfam:DUF59 K02612 - - 0.00000000000000000000112 104.0
YYD2_k127_3367534_14 PFAM extracellular solute-binding protein, family 5 K02035,K13893 - - 0.000000000000000003818 99.0
YYD2_k127_3367534_15 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000001088 61.0
YYD2_k127_3367534_16 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.0004768 49.0
YYD2_k127_3367534_2 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003713 518.0
YYD2_k127_3367534_3 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003385 482.0
YYD2_k127_3367534_4 ABC transporter K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003217 303.0
YYD2_k127_3367534_5 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001418 301.0
YYD2_k127_3367534_6 TIGRFAM FeS assembly protein SufD K09015 - - 0.000000000000000000000000000000000000000000000000000000005076 216.0
YYD2_k127_3367534_7 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000000004161 143.0
YYD2_k127_3367534_9 Histidine kinase K07709 - 2.7.13.3 0.0000000000000000000000000000000005952 149.0
YYD2_k127_3370262_0 PFAM Auxin Efflux Carrier K07088 - - 0.0000000000000000000003521 107.0
YYD2_k127_3370262_1 Threonyl and Alanyl tRNA synthetase second additional domain K01872 - 6.1.1.7 0.00000007363 64.0
YYD2_k127_3383603_0 COG1473 Metal-dependent amidase aminoacylase carboxypeptidase K01436 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009474 409.0
YYD2_k127_3383603_1 Uncharacterized conserved protein (DUF2203) - - - 0.0000000000000001281 85.0
YYD2_k127_3383603_2 phosphohistidine phosphatase, SixA K08296 - - 0.000000000002673 76.0
YYD2_k127_3427004_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007292 532.0
YYD2_k127_3427004_1 Alanine dehydrogenase/PNT, C-terminal domain K07538 - 1.1.1.368 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 375.0
YYD2_k127_3427004_2 polyketide synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 318.0
YYD2_k127_3427004_3 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008719 283.0
YYD2_k127_3427004_4 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.00000000000000000000000000000000000000000000000000000000000000000004387 248.0
YYD2_k127_3427004_5 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000007909 225.0
YYD2_k127_3427004_6 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.000000000000000000000000000000000005481 154.0
YYD2_k127_347478_0 Creatinase/Prolidase N-terminal domain K01262,K02027 - 3.4.11.9 9.175e-199 639.0
YYD2_k127_347478_1 Short chain fatty acid transporter K02106 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 440.0
YYD2_k127_347478_2 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 386.0
YYD2_k127_347478_3 palmitoyl-(protein) hydrolase activity K06999 - - 0.0000000000000000000000000000000000000000000032 182.0
YYD2_k127_347478_4 Domain of unknown function (DUF4382) - - - 0.000000000000003624 85.0
YYD2_k127_347478_5 CAAX protease self-immunity K07052 - - 0.000004447 55.0
YYD2_k127_347478_6 polysaccharide catabolic process - - - 0.0008308 50.0
YYD2_k127_3489449_0 PFAM Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000001839 140.0
YYD2_k127_3493278_0 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001438 257.0
YYD2_k127_3493278_1 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000009873 160.0
YYD2_k127_3493278_2 Glycosyl transferase, family 2 - - - 0.000000000000002638 81.0
YYD2_k127_3493278_3 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00001574 53.0
YYD2_k127_3493383_0 Protein of unknown function (DUF1343) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 364.0
YYD2_k127_3493383_1 Nucleotidyl transferase - - - 0.0000000000000000000000000002306 131.0
YYD2_k127_3493412_0 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000007444 236.0
YYD2_k127_3493412_1 Protein of unknown function (DUF1211) - - - 0.000000000000000000000000000000000000000000000000000000003569 202.0
YYD2_k127_3493412_2 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.0000000000000000004981 90.0
YYD2_k127_3497471_0 Cytochrome b subunit of formate dehydrogenase-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003885 566.0
YYD2_k127_3497471_1 NapC/NirT cytochrome c family, N-terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 447.0
YYD2_k127_3497471_2 denitrification pathway - GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0019645,GO:0022900,GO:0022904,GO:0044237,GO:0045333,GO:0055114 - 0.000000000000000000000000000000000000000000000000005861 194.0
YYD2_k127_3497471_3 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000972 150.0
YYD2_k127_3497471_4 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000002898 125.0
YYD2_k127_3497471_5 amine dehydrogenase activity K21449 - - 0.00000000000000000000000172 110.0
YYD2_k127_3497471_6 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.000000003088 64.0
YYD2_k127_3497747_0 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 475.0
YYD2_k127_3497747_1 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000002546 195.0
YYD2_k127_3497747_2 Belongs to the serpin family K13963,K13966 GO:0000323,GO:0001618,GO:0001775,GO:0001932,GO:0001933,GO:0002020,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0004857,GO:0004866,GO:0004867,GO:0004869,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0006469,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007267,GO:0008150,GO:0008284,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010466,GO:0010563,GO:0010604,GO:0010605,GO:0010646,GO:0010648,GO:0010717,GO:0010718,GO:0010950,GO:0010951,GO:0010952,GO:0012505,GO:0016032,GO:0016192,GO:0019058,GO:0019220,GO:0019222,GO:0019899,GO:0023051,GO:0023052,GO:0023057,GO:0030141,GO:0030162,GO:0030234,GO:0030260,GO:0030334,GO:0030335,GO:0030414,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032268,GO:0032269,GO:0032270,GO:0032872,GO:0032873,GO:0032879,GO:0032940,GO:0033673,GO:0034774,GO:0035425,GO:0035578,GO:0036230,GO:0038001,GO:0040012,GO:0040017,GO:0042119,GO:0042127,GO:0042325,GO:0042326,GO:0042582,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043506,GO:0043508,GO:0043549,GO:0044092,GO:0044093,GO:0044403,GO:0044409,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045595,GO:0045597,GO:0045859,GO:0045861,GO:0045862,GO:0045936,GO:0046328,GO:0046329,GO:0046718,GO:0046903,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051270,GO:0051272,GO:0051336,GO:0051338,GO:0051345,GO:0051346,GO:0051348,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0052547,GO:0052548,GO:0060205,GO:0060255,GO:0061134,GO:0061135,GO:0065007,GO:0065009,GO:0070013,GO:0070302,GO:0070303,GO:0071900,GO:0071901,GO:0080090,GO:0080134,GO:0080135,GO:0097708,GO:0098772,GO:0099503,GO:0104005,GO:1902531,GO:1902532,GO:2000026,GO:2000145,GO:2000147 - 0.00000000000000000000000000000000000000006802 156.0
YYD2_k127_3497747_3 PFAM aldo keto reductase - - - 0.00000000000006798 72.0
YYD2_k127_3531725_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 619.0
YYD2_k127_3531725_1 Isocitrate/isopropylmalate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 568.0
YYD2_k127_3531725_2 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006202 479.0
YYD2_k127_3531725_3 Acyl-CoA dehydrogenase, C-terminal domain K00252 - 1.3.8.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000646 449.0
YYD2_k127_3531725_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003769 423.0
YYD2_k127_3531725_5 Belongs to the peptidase S8 family K01361 - 3.4.21.96 0.0000000000000000000000000000000000000000000000000001804 209.0
YYD2_k127_3531725_6 domain protein K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000001967 194.0
YYD2_k127_3531725_7 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01450,K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.31,3.5.1.88 0.000000000000000000000000000000000000000000000004964 177.0
YYD2_k127_3531725_8 COG1956 GAF domain-containing protein K08968 - 1.8.4.14 0.000000000000000000000000000000000000000003905 170.0
YYD2_k127_3531725_9 Belongs to the bacterial ribosomal protein bS21 family K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000001696 78.0
YYD2_k127_3536148_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00334,K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 514.0
YYD2_k127_3536148_1 oxidoreductase K00334 - 1.6.5.3 0.0000000000000000000000000000000003491 135.0
YYD2_k127_3538290_0 Aminotransferase class-V K00812,K14260 - 2.6.1.1,2.6.1.2,2.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005857 429.0
YYD2_k127_3538290_1 Histidine kinase K01768,K12132 - 2.7.11.1,4.6.1.1 0.0000000000000000000000003869 112.0
YYD2_k127_3539866_0 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 369.0
YYD2_k127_3539866_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005214 316.0
YYD2_k127_3539866_2 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000004952 260.0
YYD2_k127_3545461_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000003478 155.0
YYD2_k127_3545461_1 repeat-containing protein - - - 0.0001232 53.0
YYD2_k127_3545462_0 ABC transporter transmembrane region K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003717 418.0
YYD2_k127_3545462_1 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 335.0
YYD2_k127_3545462_2 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002362 276.0
YYD2_k127_3545462_3 Phosphotransferase enzyme family - - - 0.00006425 55.0
YYD2_k127_3545519_0 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 466.0
YYD2_k127_3545519_1 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002071 255.0
YYD2_k127_3545519_10 B12 binding domain - - - 0.0000006808 53.0
YYD2_k127_3545519_11 - - - - 0.00007058 50.0
YYD2_k127_3545519_2 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000003527 198.0
YYD2_k127_3545519_3 transcriptional activator domain - - - 0.000000000000000000000000000000000000000000000183 194.0
YYD2_k127_3545519_4 Polysaccharide export protein K01991,K20988 - - 0.000000000000000000000000003155 124.0
YYD2_k127_3545519_5 NUBPL iron-transfer P-loop NTPase K16554 - - 0.0000000000000000000000321 109.0
YYD2_k127_3545519_6 TIGRFAM polysaccharide chain length determinant protein, PEP-CTERM locus subfamily - - - 0.000000000005133 79.0
YYD2_k127_3545519_7 exo-alpha-(2->6)-sialidase activity - - - 0.0000000006138 72.0
YYD2_k127_3545519_8 FlgD Ig-like domain - - - 0.0000000007604 72.0
YYD2_k127_3545519_9 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.0000000248 67.0
YYD2_k127_3550691_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 353.0
YYD2_k127_3550691_1 serine O-acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 309.0
YYD2_k127_3550691_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003211 245.0
YYD2_k127_3550691_3 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000001494 75.0
YYD2_k127_3558153_0 PFAM Major Facilitator Superfamily K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 310.0
YYD2_k127_3558153_1 PFAM RNA binding S1 domain protein K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003499 284.0
YYD2_k127_3558153_2 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005621 255.0
YYD2_k127_3558153_3 RNA recognition motif - - - 0.00000000000000000000000000005071 119.0
YYD2_k127_3558153_4 peroxiredoxin activity K01607 - 4.1.1.44 0.0000000000000000000000000002232 122.0
YYD2_k127_3558153_5 Translation initiation factor 1A / IF-1 - - - 0.00000000000000000000000001242 113.0
YYD2_k127_3558153_6 Alanine dehydrogenase/PNT, N-terminal domain K00324 - 1.6.1.2 0.00000000000000000000002309 104.0
YYD2_k127_3558153_7 Domain of unknown function (DUF4154) - - - 0.0000001946 61.0
YYD2_k127_3568962_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 1.015e-280 887.0
YYD2_k127_3570325_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1153.0
YYD2_k127_3570325_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.114e-240 771.0
YYD2_k127_3570325_2 dolichyl monophosphate biosynthetic process K08591 - 2.3.1.15 0.0000000000000000000000000000000002381 138.0
YYD2_k127_3570325_3 COGs COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM invasin domains) K08309 - - 0.000003052 51.0
YYD2_k127_3570325_4 Phage integrase, N-terminal SAM-like domain K03733,K04763 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0005817 44.0
YYD2_k127_3574708_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000001039 68.0
YYD2_k127_3576136_0 Sigma-70 region 2 K03088 - - 0.0000000000000000000001072 108.0
YYD2_k127_358055_0 AcrB/AcrD/AcrF family K03296 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006385 565.0
YYD2_k127_358055_1 PFAM chorismate K01665 - 2.6.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 328.0
YYD2_k127_358055_2 Membrane protein, TerC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 292.0
YYD2_k127_358055_3 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000003099 232.0
YYD2_k127_358055_4 Amino-transferase class IV K00826,K02619 - 2.6.1.42,4.1.3.38 0.00000000000000000000000000000000000000000000000000001576 205.0
YYD2_k127_358055_5 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.000000000000000000000119 106.0
YYD2_k127_358055_6 Thioredoxin - - - 0.0000000000000007346 90.0
YYD2_k127_358055_7 Methylamine utilisation protein MauE - - - 0.000000583 61.0
YYD2_k127_3581021_0 PFAM Cytochrome c, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008254 411.0
YYD2_k127_3581021_1 metal-dependent phosphohydrolase HD region - - - 0.0000000000000000000000000000000000000000000000000000001501 214.0
YYD2_k127_3586762_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001947 405.0
YYD2_k127_3586762_1 succinylglutamate desuccinylase activity K05526 - 3.5.1.96 0.000000000000000000000000000000000000000000000000000000000000000000003141 246.0
YYD2_k127_3586762_2 COG1404 Subtilisin-like serine proteases K13276 - - 0.000000000000000000003653 110.0
YYD2_k127_3586762_3 protein secretion K09800 - - 0.00000000005565 77.0
YYD2_k127_3587669_0 Belongs to the peptidase S16 family K01338,K04076,K04770 - 3.4.21.53 3.198e-237 758.0
YYD2_k127_3587669_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000002531 83.0
YYD2_k127_3587669_2 pseudouridylate synthase K06175 - 5.4.99.26 0.00002852 48.0
YYD2_k127_3587669_3 Caspase domain - - - 0.0000684 56.0
YYD2_k127_3608953_0 MreB/Mbl protein K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 447.0
YYD2_k127_3612819_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006311 480.0
YYD2_k127_3612819_1 YtxH-like protein - - - 0.0000000381 61.0
YYD2_k127_3613292_0 Belongs to the glycosyl hydrolase 57 family K16149 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 610.0
YYD2_k127_3613292_1 Domain of unknown function (DUF4912) K09942 - - 0.000000000000003003 78.0
YYD2_k127_3620044_0 Ribosomal protein S1 K02945,K03527,K12132 GO:0005575,GO:0005576,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0065010 1.17.7.4,2.7.11.1 1.022e-212 676.0
YYD2_k127_3620044_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004819 336.0
YYD2_k127_3620044_2 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000000000000000000000000000000000000000000000001854 217.0
YYD2_k127_3620044_3 Belongs to the pseudouridine synthase RsuA family K06178,K06183 - 5.4.99.19,5.4.99.22 0.000000000000000000000000000000000000000000000000000000002564 207.0
YYD2_k127_3620044_4 chorismate mutase K01713,K14170 - 4.2.1.51,4.2.1.91,5.4.99.5 0.00000000000000000000000000000000000000000000000000007408 201.0
YYD2_k127_3620044_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000003844 161.0
YYD2_k127_3620044_6 lipopolysaccharide metabolic process K07502,K08309,K19804,K21572 - - 0.0000000000000000002809 100.0
YYD2_k127_3620044_7 Segregation and condensation protein ScpA K05896 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000005576 63.0
YYD2_k127_3635761_0 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000000000000000000003397 191.0
YYD2_k127_3635761_1 Two component regulator propeller - - - 0.00000000000002716 84.0
YYD2_k127_3654616_0 the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms K00958 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257 450.0
YYD2_k127_3654616_1 Nitrite and sulphite reductase 4Fe-4S domain K00362,K00392 - 1.7.1.15,1.8.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 417.0
YYD2_k127_3656087_0 ATP-dependent DNA helicase K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 514.0
YYD2_k127_3656087_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 500.0
YYD2_k127_3656087_2 Surface antigen K07277 - - 0.0000000000000000000000003544 115.0
YYD2_k127_3656087_3 function (DUF490) K09800 - - 0.000000000001172 83.0
YYD2_k127_3656087_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000003479 67.0
YYD2_k127_3683856_0 cellulose binding - - - 0.00000000000000000000000000000002491 141.0
YYD2_k127_3683856_1 CAAX protease self-immunity K07052 - - 0.000000000003606 78.0
YYD2_k127_3687767_0 Belongs to the peptidase S41A family K04771,K11749 - 3.4.21.107 0.0000000000002594 85.0
YYD2_k127_3687767_1 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0001961 51.0
YYD2_k127_3704734_0 DNA polymerase K02337 GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0 1132.0
YYD2_k127_3704734_1 Metal-dependent phosphoesterase K07053 - 3.1.3.97 0.000000000000000000000000000000007929 131.0
YYD2_k127_371655_0 Bacterial protein of unknown function (DUF885) - - - 3.347e-220 695.0
YYD2_k127_3721500_0 Subtilase family - - - 0.000000000000000000000000000000000000000000001531 180.0
YYD2_k127_3721500_1 Bacterial transcriptional activator domain - - - 0.0000003482 61.0
YYD2_k127_3724421_0 biosynthesis protein - - - 0.0000000000000000000000000000525 132.0
YYD2_k127_3724421_1 glycosyl transferase group 1 - - - 0.00000000000000005698 85.0
YYD2_k127_3759344_0 Conserved hypothetical protein (DUF2461) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000841 257.0
YYD2_k127_3759344_1 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000007006 140.0
YYD2_k127_3759344_2 Golgi phosphoprotein 3 (GPP34) - - - 0.00000000000000000008347 104.0
YYD2_k127_375980_0 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000003161 182.0
YYD2_k127_375980_1 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000002882 168.0
YYD2_k127_3766508_0 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000000001388 143.0
YYD2_k127_3766508_1 Protein conserved in bacteria - - - 0.000001723 61.0
YYD2_k127_3788151_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002308 267.0
YYD2_k127_3788151_1 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000002583 196.0
YYD2_k127_3788151_2 Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex K03594 GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0097577,GO:0098771 1.16.3.1 0.000000000000000000000000000000000000000000000000000006151 196.0
YYD2_k127_3788151_3 lyase activity - - - 0.0000000000000000000000000000000000000003699 169.0
YYD2_k127_3788151_4 SMART Integrin alpha beta-propellor repeat protein - - - 0.0000000003066 74.0
YYD2_k127_3788151_5 Major facilitator Superfamily - - - 0.0000000003949 72.0
YYD2_k127_3790133_0 Lipid A biosynthesis K22311 GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016740,GO:0016746,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.3.1.265 0.00001312 55.0
YYD2_k127_3795427_0 glycosyl transferase - - - 0.00000000000000000000000000000000000000000003027 170.0
YYD2_k127_3795427_1 YCII-related domain K09780 - - 0.00000000000000000000000000000000000001728 147.0
YYD2_k127_3795427_2 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000009816 81.0
YYD2_k127_3802057_0 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000001551 243.0
YYD2_k127_3802057_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000002567 143.0
YYD2_k127_3802057_2 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.00000000002601 76.0
YYD2_k127_3802587_0 Protein of unknown function (DUF3179) - - - 0.000000000000000000000000000000000000000000001173 182.0
YYD2_k127_3806021_0 amine dehydrogenase activity - - - 4.647e-235 764.0
YYD2_k127_3806021_1 Protease prsW family - - - 0.000000000000000000000008376 110.0
YYD2_k127_3806021_2 capsule polysaccharide biosynthetic process - - - 0.00000000000000009829 92.0
YYD2_k127_3806021_4 BNR repeat-like domain - - - 0.000001167 61.0
YYD2_k127_3806620_0 Domain of unknown function (DUF4921) K00965 - 2.7.7.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 428.0
YYD2_k127_3806620_1 glycogen (starch) synthase activity K00703 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 409.0
YYD2_k127_3806620_2 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K00973 - 2.7.7.24 0.000000000000000000000000000000001345 134.0
YYD2_k127_3816459_0 Class III cytochrome C family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002291 276.0
YYD2_k127_3816459_1 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K01802,K03769 - 5.2.1.8 0.0000000000000001967 94.0
YYD2_k127_3819737_0 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005595 264.0
YYD2_k127_3819737_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0000000000000000000000002851 108.0
YYD2_k127_3819737_2 Smr domain - - - 0.000000000001948 70.0
YYD2_k127_3819737_3 long-chain fatty acid transporting porin activity K06076 - - 0.0007388 49.0
YYD2_k127_3819978_0 Transglycosylase - - - 2.89e-306 970.0
YYD2_k127_3824189_0 4Fe-4S single cluster domain K06941 - 2.1.1.192 0.000000003017 59.0
YYD2_k127_3824189_1 cellulose binding - - - 0.000009792 57.0
YYD2_k127_3828044_0 Glycosyltransferase like family 2 K11936 - - 0.000000000000000000000000000000000000000000000000000000000000000000003376 240.0
YYD2_k127_3828044_1 - - - - 0.00001982 56.0
YYD2_k127_3828044_2 long-chain fatty acid transport protein - - - 0.00005458 49.0
YYD2_k127_3828639_0 Ser Thr phosphatase family protein K03547 - - 0.0000000000000000000000000000000000000000000000000000000001284 219.0
YYD2_k127_3828639_1 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000000000000003478 151.0
YYD2_k127_3828639_2 EVE domain - - - 0.0000000000000000000000000000000000000009375 154.0
YYD2_k127_3828639_3 peroxiredoxin activity - - - 0.00000000000000000000000000000000005106 143.0
YYD2_k127_3828639_4 AAA domain - - - 0.0000000000000000003167 92.0
YYD2_k127_3828639_5 AAA domain - - - 0.0000000001984 71.0
YYD2_k127_3833676_0 4Fe-4S dicluster domain K00184 - - 1.041e-289 927.0
YYD2_k127_3833676_1 Polysulphide reductase K00185 - - 2.698e-213 672.0
YYD2_k127_3833676_2 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 366.0
YYD2_k127_3833676_3 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 296.0
YYD2_k127_3833676_4 Protein of unknown function (DUF3341) - - - 0.00000000000000000000000000000000000000000000000000000005426 212.0
YYD2_k127_3833676_5 Protein of unknown function (DUF3341) - - - 0.0000000000000000000000000000000000000000000000002676 203.0
YYD2_k127_3833676_7 leucine- rich repeat protein - - - 0.000002163 59.0
YYD2_k127_3836316_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006328 396.0
YYD2_k127_3836316_1 Phenylalanyl-tRNA synthetase beta K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 380.0
YYD2_k127_3836316_2 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.000000000000000000001156 106.0
YYD2_k127_3847542_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 9.145e-201 635.0
YYD2_k127_3847542_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000294 232.0
YYD2_k127_3847542_2 Lysin motif K08307 - - 0.0000000000001016 75.0
YYD2_k127_3848430_0 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 464.0
YYD2_k127_3848430_1 PFAM Histone deacetylase K04768 - - 0.00000000000000000000000000000000000000000000000000000000000000000004001 244.0
YYD2_k127_3848430_2 succinate dehydrogenase K00241 - - 0.000000000000000000000000000000000000000006435 174.0
YYD2_k127_3852554_0 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 414.0
YYD2_k127_3852554_1 Polysaccharide biosynthesis protein K12454 - 5.1.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 376.0
YYD2_k127_3852554_2 Histidine kinase K02668,K07710 - 2.7.13.3 0.00000000000000000000000000000000000000000000007627 190.0
YYD2_k127_3852554_3 Thioredoxin K03671 - - 0.000000000000000000000000000001081 136.0
YYD2_k127_3852554_4 Evidence 5 No homology to any previously reported sequences K03643 GO:0001530,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0008289,GO:0009279,GO:0009987,GO:0010876,GO:0015920,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031975,GO:0033036,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044462,GO:0044464,GO:0045229,GO:0051179,GO:0051234,GO:0061024,GO:0071702,GO:0071709,GO:0071840,GO:0071944,GO:0097367,GO:1901264 - 0.000000000000000000000001904 109.0
YYD2_k127_3852554_5 belongs to the thioredoxin family K03671,K05838 - - 0.00000000000000222 81.0
YYD2_k127_3852554_6 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.000001064 60.0
YYD2_k127_3852554_7 penicillin-binding protein - - - 0.0005523 52.0
YYD2_k127_3858389_0 Thioredoxin-like K06196 - - 0.0000000000000000000000000000002084 131.0
YYD2_k127_3858389_1 LVIVD repeat K01179 - 3.2.1.4 0.00000003938 64.0
YYD2_k127_3858389_2 - - - - 0.000007465 55.0
YYD2_k127_3858389_3 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol - - - 0.00004401 55.0
YYD2_k127_3858389_4 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides - - - 0.000208 53.0
YYD2_k127_3863556_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001961 469.0
YYD2_k127_3863556_1 cellulose binding - - - 0.00000001548 62.0
YYD2_k127_386918_0 PFAM ABC transporter K02056 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 587.0
YYD2_k127_386918_1 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009879 396.0
YYD2_k127_386918_2 Protein of unknown function (DUF3798) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 364.0
YYD2_k127_386918_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 342.0
YYD2_k127_386918_5 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000004965 250.0
YYD2_k127_386918_6 PFAM blue (type 1) copper domain protein K00368 - 1.7.2.1 0.00000001334 62.0
YYD2_k127_3890495_0 CoA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006125 525.0
YYD2_k127_3890495_1 AI-2E family transporter - - - 0.000000000000000000002465 104.0
YYD2_k127_3890495_2 C-terminal domain of histone - - - 0.0000000000002563 78.0
YYD2_k127_3890495_3 Yip1 domain - - - 0.0000003642 61.0
YYD2_k127_39018_0 Tricorn protease homolog K08676 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 621.0
YYD2_k127_39018_1 - - - - 0.000002251 55.0
YYD2_k127_3903217_0 L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp K01876 - 6.1.1.12 9.119e-195 624.0
YYD2_k127_3903217_1 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006065 327.0
YYD2_k127_3903217_2 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 313.0
YYD2_k127_3903217_3 metal-dependent phosphohydrolase 7TM intracellular region K07037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 310.0
YYD2_k127_3903217_4 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000003076 267.0
YYD2_k127_3903217_5 diguanylate cyclase - - - 0.00000000000000000000000000002876 132.0
YYD2_k127_3903217_6 PTS fructose transporter subunit IIA K02768 - 2.7.1.202 0.0000000000000000000000000614 112.0
YYD2_k127_3903217_7 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000009274 96.0
YYD2_k127_3903217_8 VanZ like family - - - 0.0000000002654 71.0
YYD2_k127_3903217_9 Belongs to the 5'-nucleotidase family K11751 - 3.1.3.5,3.6.1.45 0.000000001835 66.0
YYD2_k127_3905714_0 NmrA-like family K00091 - 1.1.1.219 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257 409.0
YYD2_k127_3905714_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000997 361.0
YYD2_k127_3905714_2 Phenazine biosynthesis-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 307.0
YYD2_k127_3905714_3 Glucose-1-phosphate adenylyltransferase K00975 - 2.7.7.27 0.0000000000000000000005594 108.0
YYD2_k127_3914373_0 siderophore transport K16087 - - 0.000000000000000002427 100.0
YYD2_k127_391500_0 Belongs to the ClpA ClpB family K03696 - - 2.568e-194 629.0
YYD2_k127_391500_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 348.0
YYD2_k127_391500_2 polysaccharide biosynthetic process - - - 0.000000005035 69.0
YYD2_k127_3920614_0 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000004153 153.0
YYD2_k127_3920614_1 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000005786 59.0
YYD2_k127_3920614_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000009759 62.0
YYD2_k127_3921542_0 quinone binding K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009765 377.0
YYD2_k127_3921542_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000006526 163.0
YYD2_k127_3921542_2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.000000000000001386 84.0
YYD2_k127_3931156_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 7.402e-218 688.0
YYD2_k127_3931156_1 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 511.0
YYD2_k127_3931156_10 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.00000000000000000000000000006268 117.0
YYD2_k127_3931156_11 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000007388 81.0
YYD2_k127_3931156_12 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000001388 64.0
YYD2_k127_3931156_13 LytR cell envelope-related transcriptional attenuator - - - 0.00000002218 63.0
YYD2_k127_3931156_14 repeat-containing protein - - - 0.000002691 59.0
YYD2_k127_3931156_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003508 319.0
YYD2_k127_3931156_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000008772 265.0
YYD2_k127_3931156_4 Deoxynucleoside kinase K15518 - 2.7.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000102 254.0
YYD2_k127_3931156_5 Nucleotidyl transferase K11528 - 2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000004655 229.0
YYD2_k127_3931156_6 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000000006839 220.0
YYD2_k127_3931156_7 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000839 193.0
YYD2_k127_3931156_8 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000001489 153.0
YYD2_k127_3931156_9 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000001612 154.0
YYD2_k127_3931613_0 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009253 319.0
YYD2_k127_3931613_1 ABC-2 family transporter protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000007719 243.0
YYD2_k127_3931613_2 AntiSigma factor - - - 0.000000000000000000000002498 116.0
YYD2_k127_3931613_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000008185 66.0
YYD2_k127_3935076_0 Thioredoxin-like - - - 0.00000000000000000000000000005268 136.0
YYD2_k127_3935076_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000007167 105.0
YYD2_k127_3940324_0 thiolester hydrolase activity K01179,K06889,K10773,K15853 - 3.2.1.4,4.2.99.18 0.0000000000000000000000000000000000000000000000001263 194.0
YYD2_k127_3940324_1 Methyltransferase domain K00588 - 2.1.1.104 0.00000000000000000000000000000000000000000002977 168.0
YYD2_k127_3940324_2 iron-sulfur cluster-binding protein K18979 - 1.17.99.6 0.0000000000000000636 94.0
YYD2_k127_3940324_3 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000000002173 66.0
YYD2_k127_3941104_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 GO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 403.0
YYD2_k127_3941104_1 HMGL-like K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 340.0
YYD2_k127_3941104_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000004632 104.0
YYD2_k127_3943185_0 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002674 463.0
YYD2_k127_3943185_1 Cytochrome c554 and c-prime K03620 - - 0.000000000000000000000000000000000000000000000000000000000000000000006628 264.0
YYD2_k127_3943185_2 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000003789 196.0
YYD2_k127_3943185_3 Rieske [2Fe-2S] domain K00411,K02636,K03886 - 1.10.2.2,1.10.9.1 0.00000000000000000000000000000000000000000007297 166.0
YYD2_k127_3943185_4 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000007663 144.0
YYD2_k127_3944481_0 Lipopolysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000001906 230.0
YYD2_k127_3953346_0 CHAT domain - - - 0.0000000000000000000000000000000003239 151.0
YYD2_k127_3953346_1 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000014 115.0
YYD2_k127_3955871_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 426.0
YYD2_k127_3955871_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000003043 189.0
YYD2_k127_3955871_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000009426 129.0
YYD2_k127_3955871_3 Preprotein translocase, YajC subunit K03210 - - 0.0000000000000000009718 91.0
YYD2_k127_3975980_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001125 273.0
YYD2_k127_3975980_1 amino acid activation for nonribosomal peptide biosynthetic process K17713,K20952 - - 0.0000000000000000000000000000000000000000000002089 193.0
YYD2_k127_3975980_2 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000004257 127.0
YYD2_k127_3975980_3 transferase activity, transferring glycosyl groups K00786 - - 0.000000000000000000000000000443 130.0
YYD2_k127_3975980_4 Belongs to the bacterial histone-like protein family K03530 - - 0.00000000000000000006474 93.0
YYD2_k127_3983157_0 Heme copper-type cytochrome quinol oxidase, subunit K02276 - 1.9.3.1 0.00000000000000000000000000000000000001896 153.0
YYD2_k127_3983157_1 Prokaryotic Cytochrome C oxidase subunit IV K02277 - 1.9.3.1 0.0000000000000000000000001988 117.0
YYD2_k127_3983157_2 Cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.000000000000000000000005406 108.0
YYD2_k127_3989012_0 Peptidase M16 K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000925 260.0
YYD2_k127_3989012_1 rhs family - - - 0.000003165 58.0
YYD2_k127_401061_0 Serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004303 249.0
YYD2_k127_401061_1 adenosine deaminase K01488,K21053 - 3.5.4.2,3.5.4.4 0.00000000000000000000000000000000000000000000000000000000000000004817 227.0
YYD2_k127_401061_2 Sigma-70 region 2 K03088 - - 0.000001761 58.0
YYD2_k127_4044579_0 NfeD-like C-terminal, partner-binding K07403 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 379.0
YYD2_k127_4044579_1 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008935 338.0
YYD2_k127_4046103_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1090.0
YYD2_k127_4046103_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 320.0
YYD2_k127_4052962_0 ATPase (AAA superfamily K07133 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 436.0
YYD2_k127_4052962_1 FlgD Ig-like domain K15924 - 3.2.1.136 0.0000002744 60.0
YYD2_k127_4057430_0 response regulator K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 391.0
YYD2_k127_4057430_1 Electron transfer flavoprotein K03522 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003528 285.0
YYD2_k127_4057430_2 Electron transfer flavoprotein domain K03521 - - 0.00000000000000000000000000000000000000000000000000000000000001863 229.0
YYD2_k127_4057430_3 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000001328 178.0
YYD2_k127_4057430_4 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000009889 155.0
YYD2_k127_4057430_5 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000006753 123.0
YYD2_k127_4064558_0 PFAM asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008047 411.0
YYD2_k127_4064558_1 Methionine biosynthesis protein MetW - - - 0.0000000000000166 76.0
YYD2_k127_406493_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 375.0
YYD2_k127_406493_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000001225 173.0
YYD2_k127_4070084_0 domain, Protein K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000005172 247.0
YYD2_k127_4070084_1 peptidase activity, acting on L-amino acid peptides K01337,K05994,K20276 - 3.4.11.10,3.4.21.50 0.0000000000000000000000000000004077 139.0
YYD2_k127_4086985_0 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein K08282 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002875 421.0
YYD2_k127_4086985_1 SNARE associated Golgi protein K03975 - - 0.00000000000000000000001008 102.0
YYD2_k127_4087881_0 L-asparaginase K01424 - 3.5.1.1 3.716e-199 629.0
YYD2_k127_4087881_1 GatB/GatE catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003633 451.0
YYD2_k127_4087881_2 galactose-1-phosphate K00965 - 2.7.7.12 0.000000000000000000001718 95.0
YYD2_k127_4092359_0 transferase activity, transferring glycosyl groups K00754 GO:0003674,GO:0003824,GO:0016740,GO:0016757 - 0.000000000000000000000000000000000000000000000000000000000000000000000005626 250.0
YYD2_k127_4092359_1 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.000000000000000000000000000000000000006927 157.0
YYD2_k127_4095598_0 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000001683 164.0
YYD2_k127_4095598_1 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000001507 151.0
YYD2_k127_4095598_2 - - - - 0.0000001544 53.0
YYD2_k127_4095598_4 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042221,GO:0042594,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0071496,GO:0071944 - 0.0002768 48.0
YYD2_k127_4096263_0 - - - - 0.0000005487 63.0
YYD2_k127_4096263_1 Nitrous oxidase accessory protein - - - 0.0000796 56.0
YYD2_k127_4097306_0 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000003098 91.0
YYD2_k127_4097306_1 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000267 75.0
YYD2_k127_4097306_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0003645 49.0
YYD2_k127_4115203_0 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 333.0
YYD2_k127_4115203_1 Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004554 296.0
YYD2_k127_4115203_2 - K01992 - - 0.0000000000000000000000000000000000000000000000000000000003247 222.0
YYD2_k127_4115203_3 ABC-type uncharacterized transport system - - - 0.000000000000000000000000000000000000000000000005495 192.0
YYD2_k127_4115203_4 Domain of unknown function (DUF4340) - - - 0.0000000002052 73.0
YYD2_k127_4119480_0 Enoyl-CoA hydratase K07539,K18570 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001877 476.0
YYD2_k127_4119480_1 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.0000000000000000000000000000000000000000000000000000000000004038 228.0
YYD2_k127_4119480_2 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000008069 216.0
YYD2_k127_4119480_3 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - - 0.00000000000000000000000000000000000000000000001059 175.0
YYD2_k127_4119480_4 XanTHIne and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.00000000000000000000000000000000000000000000833 179.0
YYD2_k127_4119480_5 Bacterial regulatory proteins, tetR family K09017 - - 0.00000000000000000000000000000009287 135.0
YYD2_k127_4119480_6 SMART Metal-dependent phosphohydrolase, HD - - - 0.0000000000000002536 89.0
YYD2_k127_4134131_0 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000001034 187.0
YYD2_k127_4134131_1 Carboxypeptidase regulatory-like domain - - - 0.000009967 58.0
YYD2_k127_413896_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016469,GO:0030312,GO:0032991,GO:0040007,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045259,GO:0045260,GO:0071944,GO:0098796,GO:0098797 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 537.0
YYD2_k127_413896_1 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000000000000000001626 248.0
YYD2_k127_413896_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000007862 111.0
YYD2_k127_413896_3 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000721 102.0
YYD2_k127_413896_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000001296 87.0
YYD2_k127_413896_5 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.0000008334 55.0
YYD2_k127_413896_6 - - - - 0.00005363 51.0
YYD2_k127_4178186_0 histidine kinase A domain protein - - - 0.0000000000000000000000000002632 132.0
YYD2_k127_4178862_0 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000006011 158.0
YYD2_k127_4179136_0 - - - - 0.000000000000000000000000000000000000000000000000000004793 207.0
YYD2_k127_4179136_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000156 68.0
YYD2_k127_4179136_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0005676 52.0
YYD2_k127_419276_1 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.0000000000000002207 85.0
YYD2_k127_419276_2 PFAM blue (type 1) copper domain protein K00368 - 1.7.2.1 0.00000000004906 69.0
YYD2_k127_4200015_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 1.237e-205 657.0
YYD2_k127_4200015_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000001175 210.0
YYD2_k127_4200015_2 membrane - - - 0.00000000004285 74.0
YYD2_k127_4207006_0 protein kinase activity - - - 0.0000000000000000005294 102.0
YYD2_k127_4207006_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000000000003022 79.0
YYD2_k127_4207006_2 Belongs to the Pirin family K06911 - - 0.00006869 56.0
YYD2_k127_4210061_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 362.0
YYD2_k127_4226272_0 CarboxypepD_reg-like domain K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009456 286.0
YYD2_k127_4233948_0 Glycosyl Transferase - - - 0.0000000000000000000000000000000000000000000000000000000000002794 228.0
YYD2_k127_4237401_0 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 409.0
YYD2_k127_4237401_1 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000002482 168.0
YYD2_k127_4237401_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.000000000000000000000000000000000000004551 168.0
YYD2_k127_4237401_3 P COG0025 NhaP-type Na H and K H antiporters K11747 - - 0.00001304 49.0
YYD2_k127_4242300_0 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000008873 156.0
YYD2_k127_4242300_1 Subtilase family - - - 0.000006976 50.0
YYD2_k127_4242300_2 Methionine biosynthesis protein MetW - - - 0.0003573 49.0
YYD2_k127_4247354_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000009663 185.0
YYD2_k127_4247354_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000266 73.0
YYD2_k127_4247354_2 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0004566 43.0
YYD2_k127_4249512_0 Protein of unknown function, DUF255 K06888 - - 5.911e-217 701.0
YYD2_k127_4249512_1 TGS domain K06944 - - 0.00000000000000000000000000000000000000000000882 169.0
YYD2_k127_4249512_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000002209 62.0
YYD2_k127_4249512_3 Thioredoxin-like - - - 0.0000003254 62.0
YYD2_k127_4252694_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 623.0
YYD2_k127_4252694_1 FIST C domain K01255,K01259 GO:0001073,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006276,GO:0006310,GO:0006351,GO:0006355,GO:0006508,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009056,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016787,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019904,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0042150,GO:0043170,GO:0043171,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043244,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0097718,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1903506,GO:2000112,GO:2001141 3.4.11.1,3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009942 410.0
YYD2_k127_4252694_2 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009262 393.0
YYD2_k127_4252694_3 Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009893,GO:0009987,GO:0019216,GO:0019222,GO:0019747,GO:0031323,GO:0031325,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045828,GO:0045834,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:0080090,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000009293 249.0
YYD2_k127_4252694_4 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.000000000000000000000000000002304 135.0
YYD2_k127_4252694_5 Redoxin - - - 0.000000000003039 79.0
YYD2_k127_4252694_6 Helix-hairpin-helix domain K02347 - - 0.000007943 48.0
YYD2_k127_4261653_0 Peptidase family C25 - - - 0.00000000000000005538 96.0
YYD2_k127_4300932_0 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 432.0
YYD2_k127_4300932_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007463 327.0
YYD2_k127_4300932_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 333.0
YYD2_k127_4300932_3 outer membrane efflux protein - - - 0.000000000000000000000000000000008587 147.0
YYD2_k127_4301316_0 TIGRFAM hydrolase, TatD family K03424 - - 0.0000000000000000000000000000000000000000000000000000001954 209.0
YYD2_k127_4301316_1 Phosphonate ABC transporter ATP-binding protein K09812 - - 0.0000000000000000000000000000000000000000000000004426 186.0
YYD2_k127_4301316_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.00000000000000000000000000000000000000000007189 168.0
YYD2_k127_4301316_3 PSP1 C-terminal conserved region - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000008145 177.0
YYD2_k127_4301316_4 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000001151 176.0
YYD2_k127_4301316_5 Peptidase M23 K21471 - - 0.0000000000000000000000000000000000000001956 166.0
YYD2_k127_4301316_6 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000001177 113.0
YYD2_k127_4301316_7 Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation K09811 - - 0.00000000000000000002393 104.0
YYD2_k127_4301316_8 S4 RNA-binding domain - GO:0008150,GO:0040007 - 0.0000000009147 65.0
YYD2_k127_4310415_0 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 471.0
YYD2_k127_4310415_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005684 468.0
YYD2_k127_4310415_2 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003528 368.0
YYD2_k127_4310415_3 Phage integrase, N-terminal SAM-like domain K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000007117 244.0
YYD2_k127_4310415_4 Two component regulator propeller - - - 0.00000000000000000001502 105.0
YYD2_k127_4317283_0 Bacterial regulatory protein, Fis family K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 444.0
YYD2_k127_4317283_1 HAMP domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002589 290.0
YYD2_k127_4317283_2 Histone deacetylase domain K04768 - - 0.0000000001449 66.0
YYD2_k127_4318395_0 Tricorn protease homolog K08676 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 606.0
YYD2_k127_4318395_1 CHAD domain containing protein - - - 0.0001317 49.0
YYD2_k127_4321392_0 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 1.481e-298 940.0
YYD2_k127_4321392_1 Transcriptional regulatory protein, C terminal K07667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009843 316.0
YYD2_k127_4321392_2 Amino acid permease - - - 0.0000000000000000000000000000000000000000004294 161.0
YYD2_k127_4321392_3 Belongs to the peptidase S8 family K01179 - 3.2.1.4 0.000000264 60.0
YYD2_k127_4329921_0 Putative glucoamylase K13688 - - 0.000000000000000000000000000000000000000000000000000002241 200.0
YYD2_k127_4329921_1 Aerotolerance regulator N-terminal - - - 0.00001733 57.0
YYD2_k127_4336984_0 Belongs to the Dps family K04047 - - 0.0000000000000000000000000000000000000000000000000000001005 199.0
YYD2_k127_4336984_1 PFAM Dienelactone hydrolase K01061 - 3.1.1.45 0.00000000000000000000000000000007082 130.0
YYD2_k127_4336984_2 nucleotidyltransferase activity - - - 0.000003367 58.0
YYD2_k127_4336984_3 protein conserved in bacteria - - - 0.0002932 45.0
YYD2_k127_4342785_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018 391.0
YYD2_k127_4342785_1 MiaB-like tRNA modifying enzyme K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000002109 194.0
YYD2_k127_4343777_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003168 306.0
YYD2_k127_4344287_0 Sodium/hydrogen exchanger family K11105 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 534.0
YYD2_k127_4344287_1 beta-lactamase - - - 0.0000000000000000000000000000000000000000000007923 180.0
YYD2_k127_434716_0 Carbamoyl-phosphate synthase L chain, ATP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005578 569.0
YYD2_k127_434716_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007169 452.0
YYD2_k127_434716_2 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 297.0
YYD2_k127_434716_3 Belongs to the peptidase S51 family - - - 0.000000000000000000000000000000000000000000000000000000003226 211.0
YYD2_k127_434716_4 Putative esterase K07214 - - 0.0000001368 65.0
YYD2_k127_4347273_0 Belongs to the bacterial solute-binding protein 9 family K02077 - - 0.0000000000000000000000000000000000000000000000003556 191.0
YYD2_k127_4347273_1 ABC 3 transport family K02075 - - 0.000000000000000000000000001372 116.0
YYD2_k127_4347273_2 Tfp pilus assembly protein FimV - - - 0.000000000000000003752 96.0
YYD2_k127_4352542_0 Tetratricopeptide repeat - - - 0.000001481 61.0
YYD2_k127_435309_0 Glycosyltransferase family 9 (heptosyltransferase) K02841 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.0000004728 59.0
YYD2_k127_436136_0 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 291.0
YYD2_k127_436136_1 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000001652 209.0
YYD2_k127_436136_2 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.0000000000000000000004976 107.0
YYD2_k127_436136_3 peptidyl-tyrosine sulfation - - - 0.00000000000000000004264 93.0
YYD2_k127_43692_0 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.0000415 51.0
YYD2_k127_43692_1 Pkd domain containing protein - - - 0.00006135 55.0
YYD2_k127_43692_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0006441 47.0
YYD2_k127_4373140_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000005864 269.0
YYD2_k127_4373140_1 Polysaccharide biosynthesis protein - - - 0.00007223 55.0
YYD2_k127_4374300_0 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 293.0
YYD2_k127_4374300_1 domain protein K01992 - - 0.00000000000006114 85.0
YYD2_k127_4374300_2 ABC-2 type transporter K01992 - - 0.0002653 54.0
YYD2_k127_4387891_0 ABC transporter - - - 2.97e-204 647.0
YYD2_k127_4389895_0 4Fe-4S dicluster domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000002268 237.0
YYD2_k127_4389895_1 Glycolate oxidase subunit K00104 - 1.1.3.15 0.00000000000000000001932 92.0
YYD2_k127_4389895_2 FAD binding domain K11472 - - 0.00000000000000007085 94.0
YYD2_k127_439970_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0030312,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 3.282e-291 910.0
YYD2_k127_439970_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 1.612e-287 908.0
YYD2_k127_439970_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000004062 213.0
YYD2_k127_439970_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000001402 209.0
YYD2_k127_439970_4 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000005023 83.0
YYD2_k127_4402813_0 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 3.206e-272 852.0
YYD2_k127_4402813_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000001448 93.0
YYD2_k127_442106_0 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 476.0
YYD2_k127_442106_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 329.0
YYD2_k127_442106_2 Rhomboid family - - - 0.000000000000000000000000000000000000000000000005278 186.0
YYD2_k127_442106_3 - - - - 0.0000000000000000000006168 110.0
YYD2_k127_442106_4 - - - - 0.00000000000000000882 98.0
YYD2_k127_442106_5 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000005852 81.0
YYD2_k127_442106_6 LVIVD repeat K01179 - 3.2.1.4 0.00000000000008557 85.0
YYD2_k127_442106_7 WD40 repeats - - - 0.0001244 53.0
YYD2_k127_442106_8 5'-nucleotidase, C-terminal domain K01081 - 3.1.3.5 0.000843 52.0
YYD2_k127_4423443_0 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 5.3.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000009937 262.0
YYD2_k127_4423443_1 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000002903 203.0
YYD2_k127_4423443_2 - K21449 - - 0.0005338 52.0
YYD2_k127_4447914_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 6.592e-250 789.0
YYD2_k127_4447914_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006529 333.0
YYD2_k127_4447914_2 PFAM sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004522 281.0
YYD2_k127_4447914_3 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000009763 255.0
YYD2_k127_4447914_4 Belongs to the sigma-70 factor family K02405 - - 0.0000000000000000000000000000000000000000000000000000000000006599 219.0
YYD2_k127_4447914_5 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000002772 215.0
YYD2_k127_4447914_6 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000000000000000000002309 194.0
YYD2_k127_4447914_7 translation initiation factor activity - - - 0.00000000000000000000002604 114.0
YYD2_k127_4464594_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000504 270.0
YYD2_k127_4465250_0 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009847 595.0
YYD2_k127_4465250_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003889 388.0
YYD2_k127_4465250_2 Peptidase dimerisation domain K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000005809 264.0
YYD2_k127_4465250_3 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.0000000000000000000000000000000000000000000000000000000000000001404 235.0
YYD2_k127_4465250_4 - - - - 0.000000000000000000000000000000000000008111 164.0
YYD2_k127_4465250_5 metallocarboxypeptidase activity K14054 - - 0.000000000000000000000000000000005571 144.0
YYD2_k127_4465250_6 Aminotransferase class I and II K10206 - 2.6.1.83 0.000000007796 57.0
YYD2_k127_4465250_7 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000002438 49.0
YYD2_k127_4465250_8 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00003746 53.0
YYD2_k127_4468863_0 Phosphate transport system permease K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004933 369.0
YYD2_k127_4468863_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000004214 265.0
YYD2_k127_4468863_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000006151 72.0
YYD2_k127_4472655_0 Di-haem cytochrome c peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 426.0
YYD2_k127_4472655_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 357.0
YYD2_k127_4472655_2 PFAM Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000127 189.0
YYD2_k127_4472655_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000001009 201.0
YYD2_k127_4472655_4 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.0000000000000000000000003922 117.0
YYD2_k127_4472655_5 extracellular matrix structural constituent - - - 0.00000007498 65.0
YYD2_k127_4480835_0 Cytidine monophosphokinase K00876 - 2.7.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000001467 256.0
YYD2_k127_4480835_1 Thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000214 242.0
YYD2_k127_4480835_2 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000004475 198.0
YYD2_k127_4480835_3 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000001939 183.0
YYD2_k127_4482451_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005927 333.0
YYD2_k127_4482451_1 Protein of unknown function (DUF2723) K16928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003565 273.0
YYD2_k127_4482451_2 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000006194 226.0
YYD2_k127_4482451_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000005403 177.0
YYD2_k127_4482451_4 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000002267 104.0
YYD2_k127_4482451_5 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000002734 65.0
YYD2_k127_4495274_0 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 312.0
YYD2_k127_4495274_1 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 291.0
YYD2_k127_454538_0 Dehydrogenase K00030,K00052 - 1.1.1.41,1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 390.0
YYD2_k127_454538_1 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000006442 190.0
YYD2_k127_454538_2 Domain of unknown function (DUF4331) - - - 0.00000000000000000000000000000000000000000001507 171.0
YYD2_k127_454538_3 Domain of unknown function (DUF4331) - - - 0.0000000000000000000000000000000000000000007028 165.0
YYD2_k127_454538_4 PFAM periplasmic binding protein K02016 - - 0.00000000000000000000000007433 113.0
YYD2_k127_454538_5 Methyltransferase domain - - - 0.0000000000000000000000003251 116.0
YYD2_k127_454538_6 Belongs to the peptidase S8 family - - - 0.00000000000000000000002599 112.0
YYD2_k127_454538_7 Tetratricopeptide repeat - - - 0.0002705 54.0
YYD2_k127_454538_8 PFAM FecR protein - - - 0.0003061 52.0
YYD2_k127_4567233_0 SCO1/SenC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 424.0
YYD2_k127_4567233_1 Uncharacterized protein conserved in bacteria (DUF2064) - - - 0.0000001685 61.0
YYD2_k127_4567233_2 SCO1/SenC K07152 - - 0.0000005263 51.0
YYD2_k127_4571450_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 454.0
YYD2_k127_4571450_1 Bacterial extracellular solute-binding protein, family 7 K11688,K21395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003021 300.0
YYD2_k127_4571450_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000009123 187.0
YYD2_k127_4571450_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000001386 114.0
YYD2_k127_4571450_4 ATPases associated with a variety of cellular activities K01990 - - 0.0000000000001469 70.0
YYD2_k127_4571450_5 Collagen type VII alpha 1 K16628 GO:0001704,GO:0001706,GO:0003674,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005581,GO:0005590,GO:0005604,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005793,GO:0005798,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007275,GO:0007369,GO:0007492,GO:0008150,GO:0008544,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0022607,GO:0030020,GO:0030134,GO:0030135,GO:0030154,GO:0030198,GO:0030934,GO:0031012,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033116,GO:0035987,GO:0042802,GO:0043062,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044420,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048598,GO:0048646,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0062023,GO:0065003,GO:0070013,GO:0071840,GO:0090114,GO:0097708,GO:0098588,GO:0098644,GO:0098648,GO:0098652,GO:0099080 - 0.0005328 49.0
YYD2_k127_458012_0 Winged helix-turn helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 448.0
YYD2_k127_458012_1 gluconolactonase activity K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000002488 205.0
YYD2_k127_458012_2 oxidoreductase activity - - - 0.000000000000000000000000000001357 140.0
YYD2_k127_4595435_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 502.0
YYD2_k127_4595435_1 PFAM Type II secretion system F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 473.0
YYD2_k127_4595435_2 Two component, sigma54 specific, transcriptional regulator, Fis family K07713,K07714,K19641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005444 383.0
YYD2_k127_4595435_3 His Kinase A (phosphoacceptor) domain K02668 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002795 289.0
YYD2_k127_4597307_0 response regulator K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004592 388.0
YYD2_k127_4597307_1 FES K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000001212 246.0
YYD2_k127_4597307_2 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000609 184.0
YYD2_k127_4597307_3 PAS domain K07652 - 2.7.13.3 0.00000000000000000000000000000007052 141.0
YYD2_k127_4597307_4 ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000001748 131.0
YYD2_k127_4597307_5 phosphorelay signal transduction system K07658 - - 0.0000000000000000000007205 106.0
YYD2_k127_4597307_6 - - - - 0.000000002158 67.0
YYD2_k127_4597307_7 PFAM TonB-dependent Receptor Plug Domain - - - 0.0008371 48.0
YYD2_k127_4613043_0 Phospholipid biosynthesis protein K15781 - 2.3.1.51,3.1.3.3 0.0000000000000000000000597 109.0
YYD2_k127_4613043_1 TIGRFAM glycine oxidase ThiO K03153 - 1.4.3.19 0.000000000000002017 83.0
YYD2_k127_4622222_0 PFAM peptidase U62 modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008425 364.0
YYD2_k127_4622222_1 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006713 327.0
YYD2_k127_4622222_2 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000218 270.0
YYD2_k127_4622222_3 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002071 256.0
YYD2_k127_4622222_4 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000003105 178.0
YYD2_k127_4622222_5 Propeptide_C25 - - - 0.00000000000000000000000000000000000004092 165.0
YYD2_k127_4622222_6 Amidinotransferase K01478 - 3.5.3.6 0.000000000000000000000000001052 115.0
YYD2_k127_4622222_7 Evidence 5 No homology to any previously reported sequences - - - 0.0002198 55.0
YYD2_k127_4626951_0 COG1613 ABC-type sulfate transport system, periplasmic component K02048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003928 397.0
YYD2_k127_4626951_1 Belongs to the PAPS reductase family. CysH subfamily K00366,K00390,K00860 GO:0003674,GO:0003824,GO:0004604,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016667,GO:0016671,GO:0044424,GO:0044464,GO:0055114 1.7.7.1,1.8.4.10,1.8.4.8,2.7.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006096 329.0
YYD2_k127_4626951_2 Nitrite and sulphite reductase 4Fe-4S domain K00366,K00392 - 1.7.7.1,1.8.7.1 0.0000000000001231 80.0
YYD2_k127_4650711_0 DegT/DnrJ/EryC1/StrS aminotransferase family K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000001273 218.0
YYD2_k127_4650711_1 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000005726 158.0
YYD2_k127_4650711_2 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000000000000621 135.0
YYD2_k127_4650711_3 Methyltransferase K08316 - 2.1.1.171 0.000000000000000000000000000000105 132.0
YYD2_k127_4653196_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000007556 101.0
YYD2_k127_4743376_0 COG1002 Type II restriction enzyme, methylase subunits - - - 0.00000000000000000000000000000000000000000006442 185.0
YYD2_k127_4743376_1 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000007546 135.0
YYD2_k127_4743376_2 Endonuclease I K07004 - - 0.00000008476 62.0
YYD2_k127_4743376_3 N-6 DNA Methylase - - - 0.00007768 57.0
YYD2_k127_4750305_0 Aminotransferase K10907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000814 422.0
YYD2_k127_4750305_1 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002952 246.0
YYD2_k127_4750305_2 Sortase family K07284 - 3.4.22.70 0.0000000000000000000000000000002342 132.0
YYD2_k127_4755563_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 341.0
YYD2_k127_4755563_1 Outer membrane protein assembly complex, YaeT protein K07277 - - 0.000000000000003538 87.0
YYD2_k127_4804298_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000966 456.0
YYD2_k127_4804298_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000001825 264.0
YYD2_k127_4804298_2 serine-type endopeptidase activity K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000005997 273.0
YYD2_k127_4804298_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000002682 231.0
YYD2_k127_4831489_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000003442 126.0
YYD2_k127_4831489_1 - - - - 0.0001781 50.0
YYD2_k127_4840130_0 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001325 291.0
YYD2_k127_4840130_1 Dna alkylation repair - - - 0.000000000000000004197 86.0
YYD2_k127_4845976_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 4.839e-210 675.0
YYD2_k127_4845976_1 Ribonuclease E/G family K08300,K08301 - 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005613 495.0
YYD2_k127_4845976_10 PFAM peptidase M6, immune inhibitor A - - - 0.0000000000000000000000000000000000000000000000000006839 197.0
YYD2_k127_4845976_11 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000001415 150.0
YYD2_k127_4845976_12 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000005214 126.0
YYD2_k127_4845976_13 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.000000000000000000000000000807 130.0
YYD2_k127_4845976_14 PFAM Phosphoribosyl transferase domain - - - 0.00000000000000000000000000319 120.0
YYD2_k127_4845976_15 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000157 117.0
YYD2_k127_4845976_16 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000905 99.0
YYD2_k127_4845976_17 PTS system sorbose subfamily IIB component K02745,K02793,K02794 - 2.7.1.191 0.0000000000000000008618 96.0
YYD2_k127_4845976_18 PTS system, mannose fructose sorbose family, IIA subunit K02793 - 2.7.1.191 0.00000000001152 70.0
YYD2_k127_4845976_19 Lipopolysaccharide-assembly, LptC-related - - - 0.0000000007706 70.0
YYD2_k127_4845976_2 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007894 424.0
YYD2_k127_4845976_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00016,K00024 GO:0003674,GO:0003824,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 1.1.1.27,1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 376.0
YYD2_k127_4845976_4 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 355.0
YYD2_k127_4845976_5 lipopolysaccharide-transporting ATPase activity K01990,K06861 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 308.0
YYD2_k127_4845976_6 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 302.0
YYD2_k127_4845976_7 DAHP synthetase I family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000001688 273.0
YYD2_k127_4845976_8 arabinose-5-phosphate isomerase activity K01627,K03281,K06041 - 2.5.1.55,5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000001046 279.0
YYD2_k127_4845976_9 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000008328 205.0
YYD2_k127_4847404_0 smart pdz dhr glgf K04771,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 407.0
YYD2_k127_4847404_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000002862 271.0
YYD2_k127_4847404_2 nitric oxide dioxygenase activity K00523 - 1.17.1.1 0.000000000000000000000000000000005246 142.0
YYD2_k127_4847404_3 mutator MutT protein K03574,K03575 - 3.6.1.55 0.00000000000000000000000001007 115.0
YYD2_k127_4847404_4 Belongs to the mandelate racemase muconate lactonizing enzyme family K19802 - 5.1.1.20 0.00000009085 64.0
YYD2_k127_4854138_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 572.0
YYD2_k127_4854138_1 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 527.0
YYD2_k127_4854138_2 Tryptophanyl-tRNA synthetase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 293.0
YYD2_k127_4854138_3 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.000000000000000000000007742 116.0
YYD2_k127_4854138_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000001183 111.0
YYD2_k127_4854138_5 Glycosyl transferase K00728 - 2.4.1.109 0.00000000000000000000178 109.0
YYD2_k127_4854430_0 CHAT domain - - - 0.000000000000000000000000000000000000000000003033 186.0
YYD2_k127_4854430_1 Subtilase family K14743 - - 0.0007773 51.0
YYD2_k127_4862611_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 407.0
YYD2_k127_4862611_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 368.0
YYD2_k127_4862611_2 Fe-S oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 358.0
YYD2_k127_4862611_3 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008015 283.0
YYD2_k127_4862611_4 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000005211 243.0
YYD2_k127_4862611_5 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000001153 226.0
YYD2_k127_4862611_6 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000009904 136.0
YYD2_k127_4862611_7 MerR family transcriptional regulator - - - 0.00000000000000000021 98.0
YYD2_k127_4862611_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000018 65.0
YYD2_k127_4862611_9 - - - - 0.00001821 46.0
YYD2_k127_4876945_0 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000004397 258.0
YYD2_k127_4876945_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000004654 159.0
YYD2_k127_4876945_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000006371 72.0
YYD2_k127_4876945_3 Binds directly to 16S ribosomal RNA K02968 - - 0.0000001104 57.0
YYD2_k127_4896925_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 353.0
YYD2_k127_4896925_1 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 307.0
YYD2_k127_4896925_2 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000006318 272.0
YYD2_k127_4896925_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006957 268.0
YYD2_k127_4896925_4 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000014 179.0
YYD2_k127_4896925_5 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000003146 175.0
YYD2_k127_4896925_6 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000001353 134.0
YYD2_k127_4896925_7 Methyltransferase domain - - - 0.0000000000000000000000000000007437 132.0
YYD2_k127_4896925_8 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000005546 118.0
YYD2_k127_4896925_9 Ribosomal protein L36 K02919 - - 0.00000000001838 64.0
YYD2_k127_4906278_0 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000004988 150.0
YYD2_k127_4911245_0 Belongs to the aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 584.0
YYD2_k127_4911245_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004174 385.0
YYD2_k127_4911245_2 COG0604 NADPH quinone reductase and related Zn-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008817 364.0
YYD2_k127_4911245_3 Zn-dependent proteases and their inactivated homologs K03568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 305.0
YYD2_k127_4911245_4 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000001992 286.0
YYD2_k127_4911245_5 amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000007047 241.0
YYD2_k127_4911245_6 Putative modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000009638 204.0
YYD2_k127_4911245_7 Glycerophosphoryl diester phosphodiesterase family - - - 0.0000000000000000000000000000000000000000006443 171.0
YYD2_k127_4911245_8 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000008385 50.0
YYD2_k127_4914994_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007847 434.0
YYD2_k127_4914994_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.0000000000000000000000000001531 121.0
YYD2_k127_4918571_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 413.0
YYD2_k127_4918571_1 PFAM Oxidoreductase FAD NAD(P)-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000006699 237.0
YYD2_k127_4918571_2 N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000001137 224.0
YYD2_k127_4918571_3 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000004224 83.0
YYD2_k127_4918571_4 - - - - 0.000000004148 57.0
YYD2_k127_4921134_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 - 1.4.1.3,1.4.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 487.0
YYD2_k127_4921134_1 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 325.0
YYD2_k127_4921134_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000003464 221.0
YYD2_k127_4921134_3 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000002182 225.0
YYD2_k127_4921134_4 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000003509 214.0
YYD2_k127_4921134_5 Kelch motif - - - 0.000007137 57.0
YYD2_k127_4923095_0 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 509.0
YYD2_k127_4923095_1 oxidase subunit K08738 - - 0.000000000000000000000000000000000000000000000000000000000001094 225.0
YYD2_k127_4923095_2 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process K03361,K22071 GO:0000003,GO:0000151,GO:0000746,GO:0000747,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006511,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0019953,GO:0022414,GO:0030163,GO:0030674,GO:0031145,GO:0031461,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0044764,GO:0050789,GO:0050794,GO:0051603,GO:0051704,GO:0051726,GO:0060090,GO:0065007,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234 - 0.000000000000000000000000000000000001333 150.0
YYD2_k127_4923095_3 Gram-negative-bacterium-type cell outer membrane assembly - - - 0.0000000000000000000003346 100.0
YYD2_k127_4923095_4 Cytochrome c - - - 0.000000000000000003679 86.0
YYD2_k127_4923095_5 PFAM Activator of Hsp90 ATPase 1 family protein - - - 0.000005938 59.0
YYD2_k127_4946371_0 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000001102 189.0
YYD2_k127_4946371_1 ArsC family - - - 0.000000000000000000000000005599 113.0
YYD2_k127_4946371_2 polysaccharide deacetylase - - - 0.00001161 55.0
YYD2_k127_49549_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005324 260.0
YYD2_k127_49549_1 DinB family - - - 0.0000000000000000000000000000000000000002047 154.0
YYD2_k127_4955639_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 1.939e-291 917.0
YYD2_k127_4957965_0 ATP ADP translocase K03301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 343.0
YYD2_k127_4957965_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000003627 248.0
YYD2_k127_4963250_0 Participates in both transcription termination and antitermination K02600 GO:0001000,GO:0001121,GO:0001125,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008497 375.0
YYD2_k127_4963250_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001672 265.0
YYD2_k127_4963250_2 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000000001015 99.0
YYD2_k127_4963250_3 Peptidase M28 - - - 0.000000000000000004824 86.0
YYD2_k127_498338_0 FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 527.0
YYD2_k127_498338_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000002047 178.0
YYD2_k127_498338_2 YceI-like domain - - - 0.000000001218 67.0
YYD2_k127_4997113_0 receptor - - - 0.000007319 59.0
YYD2_k127_5000903_0 Transporter associated domain K03699 - - 0.000000000000000000000000000000001197 149.0
YYD2_k127_5000903_1 diguanylate cyclase - - - 0.000000000000000000000000000000003247 143.0
YYD2_k127_5000903_2 Cbs domain K03699 - - 0.00000000000000002536 90.0
YYD2_k127_5000903_3 Psort location Cytoplasmic, score 8.87 - - - 0.00000000005293 64.0
YYD2_k127_506678_0 AAA domain - - - 0.00000000000000000000000000000000000000000000000003503 194.0
YYD2_k127_5072986_0 Psort location CytoplasmicMembrane, score - - - 0.00000000000000000000000000000000000000000000000000000000000001432 237.0
YYD2_k127_5083066_0 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000002917 93.0
YYD2_k127_5083066_1 protein secretion - - - 0.000000000000002288 78.0
YYD2_k127_5083066_2 Serine threonine protein kinase - - - 0.000000003314 64.0
YYD2_k127_5083066_3 Sigma-70, region 4 - - - 0.00000007105 62.0
YYD2_k127_5100013_0 - - - - 0.00000000000000000000000000000000000000000000000000328 196.0
YYD2_k127_5100013_1 Capsule biosynthesis CapC K22116 - - 0.000000000000000000000000000000002144 135.0
YYD2_k127_5100818_0 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000001041 220.0
YYD2_k127_5100818_1 - - - - 0.0000000000000000000000000000000000000000000000008514 185.0
YYD2_k127_5100818_2 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000001265 124.0
YYD2_k127_5120803_0 Fructose-bisphosphate aldolase class-II K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003992 385.0
YYD2_k127_5120803_1 - - - - 0.00000000000000006337 90.0
YYD2_k127_5125236_0 sigma54 specific, transcriptional regulator, Fis family K21405 - - 0.00000000001873 69.0
YYD2_k127_5125236_1 Glycosyltransferase Family 4 - - - 0.00000331 54.0
YYD2_k127_5125435_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1076.0
YYD2_k127_5125435_1 Zinc metalloprotease (Elastase) - - - 0.00000000000000000000000000000000000000000000000000000003636 221.0
YYD2_k127_5125435_2 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000004607 192.0
YYD2_k127_5125611_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007566 473.0
YYD2_k127_5125611_1 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000003992 126.0
YYD2_k127_5137441_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004778 453.0
YYD2_k127_5137918_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008196 460.0
YYD2_k127_5137918_1 Belongs to the RNA methyltransferase TrmD family K00554,K01770 GO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000001763 247.0
YYD2_k127_5137918_10 PFAM Protein kinase domain K12132 - 2.7.11.1 0.000000000002838 78.0
YYD2_k127_5137918_2 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000003943 191.0
YYD2_k127_5137918_3 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000001469 186.0
YYD2_k127_5137918_4 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000006466 181.0
YYD2_k127_5137918_5 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000003109 152.0
YYD2_k127_5137918_6 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000008164 133.0
YYD2_k127_5137918_7 Belongs to the UPF0109 family K06960 - - 0.000000000000000000000000001307 114.0
YYD2_k127_5137918_8 ribosome binding K02860 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360 - 0.00000000000000000000001004 109.0
YYD2_k127_5137918_9 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000005302 87.0
YYD2_k127_5149822_0 Acetyl-CoA hydrolase/transferase C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 576.0
YYD2_k127_5149822_1 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007438 346.0
YYD2_k127_5149822_2 alanine dehydrogenase activity K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 327.0
YYD2_k127_5149822_3 N-acyl-L-amino acid amidohydrolase K01436 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007583 303.0
YYD2_k127_5149822_4 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000001995 68.0
YYD2_k127_5151635_0 PFAM Peptidase M16 inactive domain K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000007169 254.0
YYD2_k127_5151635_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.0000000000000000000000000000000002724 133.0
YYD2_k127_5151635_2 exopeptidase activity - - - 0.00000000000000000000000000000009518 142.0
YYD2_k127_5152037_0 Protein of unknown function (DUF3419) K13622 - - 0.00000000000000000000000000000000000000000000000000000000000000000009709 246.0
YYD2_k127_5152037_1 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000000000000000000000000000000000000004857 197.0
YYD2_k127_5152037_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000003119 157.0
YYD2_k127_5152037_3 phosphatidylcholine synthase K01004 - 2.7.8.24 0.00000000000009943 84.0
YYD2_k127_5152037_4 efflux transmembrane transporter activity - - - 0.0001694 54.0
YYD2_k127_5152757_0 tail specific protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002727 344.0
YYD2_k127_5152757_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000001882 216.0
YYD2_k127_5152757_2 Aldehyde dehydrogenase family - - - 0.000000000000000000000001688 109.0
YYD2_k127_5163117_0 4 iron, 4 sulfur cluster binding K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 295.0
YYD2_k127_5163117_1 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004388 274.0
YYD2_k127_5163117_2 Glycine cleavage H-protein - - - 0.0000000000008094 77.0
YYD2_k127_5163117_3 Glycine cleavage H-protein - - - 0.0000000000639 71.0
YYD2_k127_5167587_0 VWA domain containing CoxE-like protein K07114 - - 0.00000000000000000000000000000000000000000000000001963 192.0
YYD2_k127_5167587_1 VWA domain containing CoxE-like protein K07114 - - 0.00000000000000000000000000000000000001433 159.0
YYD2_k127_5167587_2 endonuclease activity K07451 - - 0.000000000000000008715 92.0
YYD2_k127_5180138_0 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 483.0
YYD2_k127_5180138_1 MgtE intracellular N domain K02000,K05847 - 3.6.3.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000004777 276.0
YYD2_k127_5180138_2 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000004353 194.0
YYD2_k127_5180138_3 Large extracellular alpha-helical protein K06894 - - 0.0000000002376 66.0
YYD2_k127_5188312_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007521 576.0
YYD2_k127_5188312_1 iron ion homeostasis K03709,K04758 - - 0.00000000000000000000000000000000000000000002291 173.0
YYD2_k127_5188312_2 SIS domain K07106 - 4.2.1.126 0.00000000000000000000000000000000000001253 151.0
YYD2_k127_5188312_3 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000001068 132.0
YYD2_k127_5188312_5 response regulator K02667 - - 0.00001857 51.0
YYD2_k127_5190026_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 379.0
YYD2_k127_5190026_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000004629 173.0
YYD2_k127_5190026_2 cellulase activity K01179,K01361,K13277,K21449 - 3.2.1.4,3.4.21.96 0.000002467 50.0
YYD2_k127_5203393_0 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000006815 193.0
YYD2_k127_5252559_0 -O-antigen K18814 - - 0.000000000002297 71.0
YYD2_k127_5252559_1 overlaps another CDS with the same product name - - - 0.00000000616 68.0
YYD2_k127_5259895_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 505.0
YYD2_k127_5259895_1 ABC-type transport system involved in lipoprotein release permease component K02004,K09808 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008104,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0034613,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0070727,GO:0071944,GO:0072657,GO:0089705,GO:0098796,GO:0098797,GO:1990778 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004201 355.0
YYD2_k127_5259895_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000001285 161.0
YYD2_k127_5262318_0 Fumarylacetoacetase N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000139 203.0
YYD2_k127_5262318_1 Protein of unknown function (DUF1211) - - - 0.0000000000000000000000000000000003327 140.0
YYD2_k127_5262318_2 Tellurite resistance protein TerB - - - 0.00000000000000000000000002117 117.0
YYD2_k127_527841_0 DinB superfamily - - - 0.0000000000000000000000000000000000000000002423 167.0
YYD2_k127_527841_1 DinB family - - - 0.000000000000000000001444 102.0
YYD2_k127_5283577_0 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000906 386.0
YYD2_k127_5283577_1 BadF/BadG/BcrA/BcrD ATPase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002276 308.0
YYD2_k127_5290481_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 1.329e-301 937.0
YYD2_k127_5290481_1 Aconitase family (aconitate hydratase) - - - 3.946e-295 920.0
YYD2_k127_5290481_2 abc transporter atp-binding protein K02028,K10041 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009735 289.0
YYD2_k127_5290481_3 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K02029 - - 0.0000000000000000000000000000000000000000000000000000003944 200.0
YYD2_k127_5290481_4 Bacterial periplasmic substrate-binding proteins K02029,K02030 - - 0.0000009366 51.0
YYD2_k127_5296579_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005938 526.0
YYD2_k127_5296579_1 Protein of unknown function (DUF1573) - - - 0.000000000001609 79.0
YYD2_k127_5323620_0 AcrB/AcrD/AcrF family K03296 - - 7.636e-240 794.0
YYD2_k127_5323620_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 518.0
YYD2_k127_5323620_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000001163 176.0
YYD2_k127_5346668_0 agmatine deiminase activity K10536 - 3.5.3.12 0.000000000000000000000000000000000000000000000000000000000003552 222.0
YYD2_k127_5346668_1 Formiminotransferase-cyclodeaminase K00603,K13990 - 2.1.2.5,4.3.1.4 0.00000000005694 68.0
YYD2_k127_5373566_0 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01502 - 3.5.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005061 326.0
YYD2_k127_5373566_1 SnoaL-like domain - - - 0.000000000000000000000000000002956 126.0
YYD2_k127_5374213_0 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 474.0
YYD2_k127_5374213_1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004716 453.0
YYD2_k127_5374213_2 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.00000000000000000000000000000000000000000000000000000001536 203.0
YYD2_k127_5374213_3 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000001016 195.0
YYD2_k127_5374213_4 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000000000841 107.0
YYD2_k127_5374213_5 - - - - 0.000000003096 69.0
YYD2_k127_5374213_6 Outer membrane lipoprotein - - - 0.0000002099 53.0
YYD2_k127_5374213_7 Major facilitator superfamily MFS_1 - - - 0.00003638 56.0
YYD2_k127_5376237_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175,K00177,K00187 - 1.2.7.11,1.2.7.3,1.2.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 589.0
YYD2_k127_5376237_1 Pyruvate:ferredoxin oxidoreductase core domain II K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006994 481.0
YYD2_k127_5376237_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 358.0
YYD2_k127_5376237_3 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 307.0
YYD2_k127_5376237_4 Hydrogenase accessory protein HypB K04652 - - 0.00000000000000000000000000000000000000000000000000000000000002364 222.0
YYD2_k127_5376237_5 4Fe-4S dicluster domain K00176 - 1.2.7.3 0.00000000000000000000001429 107.0
YYD2_k127_5376237_6 Hydrogenase/urease nickel incorporation, metallochaperone, hypA K04651 - - 0.00000000000008009 76.0
YYD2_k127_5376237_7 hydrogenase expression formation protein HypE K04655 - - 0.0000000000007842 69.0
YYD2_k127_5376803_0 3-isopropylmalate dehydratase activity K01681,K01703,K01704,K17749 - 4.2.1.3,4.2.1.33,4.2.1.35 2.013e-231 751.0
YYD2_k127_5376803_1 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 2.625e-223 706.0
YYD2_k127_5376803_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0005024 51.0
YYD2_k127_5391266_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003525 401.0
YYD2_k127_5391266_1 Phosphoesterase, PA-phosphatase related - - - 0.00000000000000000000000000000000000000000004784 180.0
YYD2_k127_5391266_2 Belongs to the UPF0434 family K09791 - - 0.00000000000000002581 84.0
YYD2_k127_5397340_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 405.0
YYD2_k127_5397340_1 LD-carboxypeptidase K01297 - 3.4.17.13 0.0000000000000000000000000000000000000000000000000000000000004638 220.0
YYD2_k127_5403720_0 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000005832 72.0
YYD2_k127_5403720_1 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.000003749 59.0
YYD2_k127_5407589_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006346 344.0
YYD2_k127_5407589_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 297.0
YYD2_k127_5407589_2 cytochrome complex assembly - - - 0.0000000000000000000000000000000000000004148 160.0
YYD2_k127_5407589_3 involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000001311 152.0
YYD2_k127_5407589_4 Aconitase C-terminal domain K01681 GO:0001889,GO:0003674,GO:0003824,GO:0003994,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008198,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031974,GO:0032501,GO:0032502,GO:0035900,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048037,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0051536,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0061008,GO:0070013,GO:0071704,GO:0072350 4.2.1.3 0.0000000000000000000000000000000000004715 141.0
YYD2_k127_5407589_5 Bacterial transcriptional repressor C-terminal K09017 - - 0.000000005381 67.0
YYD2_k127_5417065_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008327 378.0
YYD2_k127_5417065_1 Cytochrome c - - - 0.000000000005531 71.0
YYD2_k127_5430162_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627 424.0
YYD2_k127_5430162_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000004202 204.0
YYD2_k127_5430162_2 Glycine cleavage H-protein K02437 GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 - 0.00000000000000000000000000000000000008939 154.0
YYD2_k127_5451697_0 GDP-mannose 4,6 dehydratase K01784,K17947 - 5.1.3.2,5.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025 320.0
YYD2_k127_5451697_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.00000000000000000000000000000000000000000001588 166.0
YYD2_k127_5451697_2 Polysaccharide biosynthesis protein K12454 - 5.1.3.10 0.0000000005569 61.0
YYD2_k127_5451697_3 penicillin-binding protein - - - 0.0002241 53.0
YYD2_k127_5455551_0 Sortilin, neurotensin receptor 3, - - - 0.00004871 56.0
YYD2_k127_545838_0 ATPase associated with various cellular K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 419.0
YYD2_k127_545838_1 Protein of unknown function DUF58 - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000003674 264.0
YYD2_k127_545838_2 HIT domain K02503 - - 0.000000000000000000000000000000000000004729 150.0
YYD2_k127_545838_3 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000008298 87.0
YYD2_k127_5464081_0 Transcriptional regulator, LysR - - - 0.000000000000000000000000000000000000000000000000000001926 205.0
YYD2_k127_5464081_1 PFAM Peptidase M16 inactive domain K07263 - - 0.00000000000000000000000000000000000000000006895 178.0
YYD2_k127_5464081_2 protein trimerization - - - 0.00000000000001587 82.0
YYD2_k127_5467274_0 amino acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005017 328.0
YYD2_k127_5468928_0 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000005554 226.0
YYD2_k127_5468928_1 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.00000000000000000000000002637 121.0
YYD2_k127_5468928_2 Belongs to the BshC family K22136 - - 0.0000000002237 65.0
YYD2_k127_5478817_0 Putative neutral zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006489 267.0
YYD2_k127_5478817_1 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001255 269.0
YYD2_k127_5478817_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000000000002253 115.0
YYD2_k127_5478817_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000000001963 96.0
YYD2_k127_5478817_4 COG2515 1-aminocyclopropane-1-carboxylate deaminase K05396 - 4.4.1.15 0.000000000000000443 87.0
YYD2_k127_5482376_0 Carbamoyltransferase C-terminus K00612 - - 2.542e-263 824.0
YYD2_k127_5482376_1 nodulation - - - 0.0002042 49.0
YYD2_k127_5486113_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1323.0
YYD2_k127_5487611_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004944 385.0
YYD2_k127_5487611_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000847 303.0
YYD2_k127_5487611_2 DinB family - - - 0.0000000000000000000000000000008088 127.0
YYD2_k127_549414_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.855e-220 694.0
YYD2_k127_5494558_0 PolyA polymerase K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 395.0
YYD2_k127_5494558_1 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 - 3.1.21.7 0.00000000000000000000000000000000000000000000000000000000000001261 222.0
YYD2_k127_5494558_2 - - - - 0.00000000000000000004644 96.0
YYD2_k127_5494558_3 Belongs to the UPF0337 (CsbD) family - - - 0.000000000001214 72.0
YYD2_k127_550275_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003152 589.0
YYD2_k127_550275_1 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005693 560.0
YYD2_k127_550275_10 malonyl CoA-acyl carrier protein transacylase K00645,K15327,K15329,K15355,K15469 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 288.0
YYD2_k127_550275_11 Permease YjgP YjgQ family protein K07091,K11720 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006461 296.0
YYD2_k127_550275_12 KR domain K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003734 277.0
YYD2_k127_550275_13 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000000002732 205.0
YYD2_k127_550275_14 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000001227 174.0
YYD2_k127_550275_15 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000004893 171.0
YYD2_k127_550275_16 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000006628 184.0
YYD2_k127_550275_17 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000000000000000000004654 155.0
YYD2_k127_550275_18 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000102 152.0
YYD2_k127_550275_19 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000003014 159.0
YYD2_k127_550275_2 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007194 533.0
YYD2_k127_550275_20 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000006096 136.0
YYD2_k127_550275_21 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000005611 111.0
YYD2_k127_550275_22 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000001203 118.0
YYD2_k127_550275_23 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000002925 114.0
YYD2_k127_550275_24 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000001759 98.0
YYD2_k127_550275_25 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000016 90.0
YYD2_k127_550275_26 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.00000000000006467 72.0
YYD2_k127_550275_27 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.000000006939 58.0
YYD2_k127_550275_28 Putative zinc-finger - - - 0.000394 51.0
YYD2_k127_550275_3 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 499.0
YYD2_k127_550275_4 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 434.0
YYD2_k127_550275_5 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 423.0
YYD2_k127_550275_6 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 385.0
YYD2_k127_550275_7 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005513 314.0
YYD2_k127_550275_8 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 295.0
YYD2_k127_550275_9 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004518 282.0
YYD2_k127_553003_0 Peptidase M16 inactive domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005076 389.0
YYD2_k127_5543340_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K03918 - 2.6.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 519.0
YYD2_k127_5543340_1 copper-translocating P-type ATPase K17686 - 3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006179 421.0
YYD2_k127_5543340_2 PFAM L-asparaginase II - - - 0.00000000000000000000000000000000000000000000000005761 201.0
YYD2_k127_5543340_3 membrane K08972 - - 0.0000000000000000003568 92.0
YYD2_k127_5543869_0 Bacterioferritin (cytochrome b1) K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004091 282.0
YYD2_k127_5543869_1 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000001835 197.0
YYD2_k127_5543869_2 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000006524 157.0
YYD2_k127_5545186_0 Belongs to the sulfur carrier protein TusA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006625 434.0
YYD2_k127_5545186_1 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000001571 179.0
YYD2_k127_5545186_2 lactoylglutathione lyase activity - - - 0.000000000000000000000000000000000000000959 150.0
YYD2_k127_5545186_3 TIGRFAM export-related chaperone CsaA K06878 - - 0.000000000000000000000000000000005567 130.0
YYD2_k127_5573357_0 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000001059 248.0
YYD2_k127_5573357_1 PFAM OmpA MotB domain protein K03640 - - 0.00000000000000000000000000000000001409 141.0
YYD2_k127_5578511_0 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000001032 139.0
YYD2_k127_5578511_1 Serine threonine protein kinase - - - 0.0000000000000000000000000008538 132.0
YYD2_k127_5584112_0 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 336.0
YYD2_k127_5584112_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 327.0
YYD2_k127_5584112_2 Phosphate transport system permease K02038 - - 0.00000000000007962 77.0
YYD2_k127_5584112_3 - - - - 0.0000000000005771 73.0
YYD2_k127_558783_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 1.155e-204 647.0
YYD2_k127_558783_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 387.0
YYD2_k127_558783_2 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000002666 269.0
YYD2_k127_558783_3 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000000000000000000000000000003362 199.0
YYD2_k127_558783_4 Ribosomal protein L31 - - - 0.0000000000000000000000002906 106.0
YYD2_k127_558783_5 pyrroloquinoline quinone binding K12349 - 3.5.1.23 0.000000000000001347 90.0
YYD2_k127_558783_6 Tetratricopeptide repeat - - - 0.00005588 55.0
YYD2_k127_5590851_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 337.0
YYD2_k127_5605593_0 Cytidylate kinase-like family - - - 0.0000000000000000000000000000000000001505 150.0
YYD2_k127_5605593_1 PFAM GlcNAc-PI de-N-acetylase K01463 - - 0.0000000000000000000000000003996 123.0
YYD2_k127_5605593_2 CsbD-like - - - 0.0000000000000006062 78.0
YYD2_k127_5609295_0 Surface antigen K07277 - - 0.000000000000000000000000005419 123.0
YYD2_k127_5611059_0 Belongs to the EPSP synthase family. MurA subfamily K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004332 464.0
YYD2_k127_5611059_1 Elongation factor SelB winged helix 3 K03833 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 304.0
YYD2_k127_5611059_2 Elongation factor Tu domain 2 K03833 - - 0.000000000000000000000000000000000000000000000000000004421 196.0
YYD2_k127_5611059_3 Fibronectin-binding protein A N-terminus (FbpA) K01153,K15524 - 3.1.21.3,3.2.1.170 0.00000000000000000000000000000002206 134.0
YYD2_k127_5637748_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 4.601e-224 702.0
YYD2_k127_5637748_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000006615 247.0
YYD2_k127_5637748_2 palmitoyl-(protein) hydrolase activity K01091 - 3.1.3.18 0.00000000000002186 85.0
YYD2_k127_5638883_0 Tetratricopeptide repeat - - - 0.000007424 58.0
YYD2_k127_5643390_0 PTS system, fructose-specific IIB K02768,K02769,K02770 - 2.7.1.202 0.0000000000000000000005612 100.0
YYD2_k127_5643390_1 signal transduction protein - - - 0.000000000000000000001766 106.0
YYD2_k127_5644467_0 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001298 273.0
YYD2_k127_5645935_0 adenosine deaminase K01488 - 3.5.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 389.0
YYD2_k127_5645935_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008693 288.0
YYD2_k127_5645935_2 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000002836 155.0
YYD2_k127_5645935_3 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.00000000000000001177 92.0
YYD2_k127_5645935_4 ABC transporter K06158 - - 0.0008835 45.0
YYD2_k127_5657877_0 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000001618 228.0
YYD2_k127_5657877_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000009063 66.0
YYD2_k127_5657877_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000002492 57.0
YYD2_k127_5657900_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 361.0
YYD2_k127_5657900_1 Aminotransferase K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000002628 177.0
YYD2_k127_5657900_2 TIGRFAM DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000000005873 172.0
YYD2_k127_5657900_3 Regulatory protein, FmdB family - - - 0.0000000000000000000006735 99.0
YYD2_k127_5664254_0 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006127 264.0
YYD2_k127_5664254_1 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004985 286.0
YYD2_k127_5664254_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000003882 211.0
YYD2_k127_5664254_3 Tetratricopeptide repeat - - - 0.000151 53.0
YYD2_k127_5664254_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0008195 42.0
YYD2_k127_567272_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009608 449.0
YYD2_k127_567272_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008531 472.0
YYD2_k127_567272_2 phosphoserine phosphatase activity K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000002786 213.0
YYD2_k127_567272_3 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000004227 169.0
YYD2_k127_567272_4 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.00000000000000000000000000000000000001438 166.0
YYD2_k127_567272_5 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000003835 82.0
YYD2_k127_567272_7 - - - - 0.0000957 46.0
YYD2_k127_568613_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 289.0
YYD2_k127_568613_1 endoribonuclease K09022 - 3.5.99.10 0.000000000000000000000000000000002189 133.0
YYD2_k127_568613_2 - - - - 0.0000000004504 70.0
YYD2_k127_5688696_0 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009166 431.0
YYD2_k127_5688696_1 PFAM Endonuclease Exonuclease phosphatase K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006518 289.0
YYD2_k127_5688696_2 Belongs to the serpin family K13963 - - 0.0000000000000000000000000000000000004265 147.0
YYD2_k127_5688696_3 Right handed beta helix region - - - 0.00000000944 67.0
YYD2_k127_569113_0 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008878 326.0
YYD2_k127_569113_1 Voltage gated chloride channel K03281 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 320.0
YYD2_k127_569113_2 Domain of unknown function (DUF4338) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004566 262.0
YYD2_k127_569113_3 Putative citrate transport - - - 0.00000000000000000000000000000001488 128.0
YYD2_k127_569113_4 spore germination K01918 - 6.3.2.1 0.0000000000004351 76.0
YYD2_k127_5695372_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 443.0
YYD2_k127_5695372_1 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 384.0
YYD2_k127_5695372_2 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 325.0
YYD2_k127_5695372_3 C4-type zinc ribbon domain K07164,K22391 - 3.5.4.16 0.000000000000000000001107 106.0
YYD2_k127_5695372_4 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000008694 95.0
YYD2_k127_5695372_5 LppC putative lipoprotein - - - 0.00000000167 69.0
YYD2_k127_5695372_7 Dolichyl-phosphate-mannose-protein mannosyltransferase K00786 - - 0.0002172 55.0
YYD2_k127_571059_0 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003654 421.0
YYD2_k127_571059_1 PFAM Aldo keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 339.0
YYD2_k127_571059_2 NUDIX domain - - - 0.0000000000000000000000000000000000000000002806 170.0
YYD2_k127_571059_4 - - - - 0.0008282 42.0
YYD2_k127_5718440_0 Belongs to the ClpA ClpB family K03696 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 578.0
YYD2_k127_5718440_1 ATP:guanido phosphotransferase, C-terminal catalytic domain K19405 - 2.7.14.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 312.0
YYD2_k127_5718440_2 protein with conserved CXXC pairs K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 - 0.0000000000000000000000000000004215 129.0
YYD2_k127_5718440_3 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.00003134 48.0
YYD2_k127_5724236_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 4.291e-204 646.0
YYD2_k127_5724236_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006351,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009330,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034335,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0140097,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 436.0
YYD2_k127_5729391_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004229 287.0
YYD2_k127_5729391_1 SpoIVB peptidase S55 K00973,K02414,K21449 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000002025 253.0
YYD2_k127_5729391_2 - - - - 0.00000000000000000000000000000000000000000002025 176.0
YYD2_k127_5740048_0 Peptidase M16C associated K06972 - - 1.756e-260 848.0
YYD2_k127_5743477_0 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000001976 243.0
YYD2_k127_5743477_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000001598 145.0
YYD2_k127_5743477_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000007969 106.0
YYD2_k127_5743477_3 Polymer-forming cytoskeletal - - - 0.0000000001388 70.0
YYD2_k127_5768692_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 0.0 1282.0
YYD2_k127_5769436_0 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000001222 181.0
YYD2_k127_5769436_1 AAA domain - - - 0.00000000000000000000000000003563 133.0
YYD2_k127_5769436_2 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000008732 82.0
YYD2_k127_5769436_3 Belongs to the peptidase S8 family - - - 0.0007487 49.0
YYD2_k127_577454_0 Phosphoenolpyruvate phosphomutase K03417 - 4.1.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000004616 252.0
YYD2_k127_577454_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006607 249.0
YYD2_k127_577454_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000001924 136.0
YYD2_k127_577454_4 Regulatory protein, FmdB family - - - 0.0000000001263 66.0
YYD2_k127_5781267_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 444.0
YYD2_k127_5781267_2 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.0009726 42.0
YYD2_k127_5781872_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.5 0.0 1045.0
YYD2_k127_5781872_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007585 387.0
YYD2_k127_5781872_2 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.000000000000000000000000000000000000000000000000001049 190.0
YYD2_k127_5781872_3 TPM domain K06872 - - 0.00000000000000000000000000000254 130.0
YYD2_k127_5789594_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000001312 253.0
YYD2_k127_5789594_1 Belongs to the UPF0145 family - - - 0.0000000000000000000000000000000000000001032 159.0
YYD2_k127_5789594_2 Belongs to the ClpA ClpB family K03695,K03696 - - 0.0000000000000000000000000000000000903 150.0
YYD2_k127_5789594_3 Phosphorylase superfamily K00772,K03783 - 2.4.2.1,2.4.2.28 0.00000000000000000000000000000001639 133.0
YYD2_k127_5789594_4 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000005698 88.0
YYD2_k127_5789965_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07642,K07652,K10681 - 2.7.13.3 0.00000000000000000000000000000000000000003932 169.0
YYD2_k127_5789965_1 - - - - 0.00000000000000000000000000000004067 134.0
YYD2_k127_5789965_2 DinB family - - - 0.00000000000000000000000000000005129 132.0
YYD2_k127_5802860_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000007132 139.0
YYD2_k127_5804921_0 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 568.0
YYD2_k127_58129_0 Tetratricopeptide repeat K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003915 305.0
YYD2_k127_58129_1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.00000000000000000000000000000000000000000000000000000000000461 215.0
YYD2_k127_58129_2 rna polymerase sigma factor - - - 0.0000000000000000000000000000000000000000000005433 183.0
YYD2_k127_58129_3 Cytochrome c - - - 0.00000000000001218 83.0
YYD2_k127_5819438_0 Belongs to the MurCDEF family K01924 GO:0000166,GO:0000270,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0035639,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0046872,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 481.0
YYD2_k127_5819438_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 457.0
YYD2_k127_5819438_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 379.0
YYD2_k127_5819438_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005522 356.0
YYD2_k127_5819438_4 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 341.0
YYD2_k127_5819438_5 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001062 296.0
YYD2_k127_5819438_6 Cell cycle protein K03588 - - 0.000000000000000000000000000000000000000000000000000000000000182 228.0
YYD2_k127_5819438_7 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K01921,K03589,K06438 GO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019954,GO:0022402,GO:0022414,GO:0022607,GO:0031224,GO:0031226,GO:0032153,GO:0032505,GO:0032506,GO:0040007,GO:0042802,GO:0043093,GO:0044085,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0090529,GO:1902410,GO:1903047 6.3.2.4 0.000003084 59.0
YYD2_k127_5819438_8 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00002848 47.0
YYD2_k127_5823545_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 6.355e-202 639.0
YYD2_k127_5836084_0 Serine phosphatase RsbU regulator of sigma subunit K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000003048 211.0
YYD2_k127_5836084_1 Memo-like protein K06990 - - 0.000000000000000000000000000000000000000000000002839 183.0
YYD2_k127_5836084_2 Domain of unknown function DUF11 - - - 0.000009864 60.0
YYD2_k127_583976_0 Prolyl oligopeptidase family - - - 0.000000000000000000000000000001389 125.0
YYD2_k127_583976_1 NmrA-like family K00091 - 1.1.1.219 0.00000000000000000000000000147 127.0
YYD2_k127_583976_2 peptidase S9 prolyl oligopeptidase active site K01303 - 3.4.19.1 0.000004933 49.0
YYD2_k127_5840182_0 Carbamoyl-phosphate synthetase large chain domain protein K01955 - 6.3.5.5 0.0 1223.0
YYD2_k127_5840182_1 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008784 364.0
YYD2_k127_5840182_2 PFAM Radical SAM - - - 0.00000000000000000000000000000000002344 143.0
YYD2_k127_5840182_3 ADP-ribosylglycohydrolase K05521 - 3.2.2.24 0.00000000000000000000000000001399 131.0
YYD2_k127_584889_0 PFAM Cytochrome c oxidase, subunit I K04561 - 1.7.2.5 3.246e-220 690.0
YYD2_k127_584889_1 glyoxalase III activity - - - 0.0000000000000000000000000002728 126.0
YYD2_k127_584889_2 cytochrome c K02305 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0004132 44.0
YYD2_k127_5888095_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 571.0
YYD2_k127_5888095_1 Homocysteine S-methyltransferase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000000000000000000000000000008845 191.0
YYD2_k127_5888095_2 Phosphoglycerate mutase family - - - 0.0007327 51.0
YYD2_k127_590452_0 (ABC) transporter K06147,K06148,K11085,K16787,K18104,K18889 - 3.6.3.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006042 417.0
YYD2_k127_590452_1 PFAM ABC transporter transmembrane region K06147,K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003906 405.0
YYD2_k127_590452_2 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000005759 134.0
YYD2_k127_590452_3 Putative adhesin - - - 0.00000000008707 76.0
YYD2_k127_5911206_0 xanthine uracil permease family protein K06901 K06901 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005208 396.0
YYD2_k127_5911206_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000004113 146.0
YYD2_k127_5911206_2 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000004234 111.0
YYD2_k127_5911206_3 NUDIX domain - - - 0.0000171 48.0
YYD2_k127_5917037_0 Peptidase M28 - - - 0.0000000000000000000000000000000000000000000000018 183.0
YYD2_k127_5923181_0 PFAM type II secretion system K12511 - - 0.000000000000000000000000000000000000000000000000000004098 198.0
YYD2_k127_5923181_1 - - - - 0.0000000004617 72.0
YYD2_k127_5923181_2 Alanyl-tRNA synthetase K01872 - 6.1.1.7 0.000000003555 64.0
YYD2_k127_5923869_0 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 586.0
YYD2_k127_5923869_1 ABC transporter substrate-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003202 461.0
YYD2_k127_5923869_2 ABC-type sugar transport systems, permease components K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006801 359.0
YYD2_k127_5923869_3 ABC-type sugar transport system, permease component K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004439 317.0
YYD2_k127_5931406_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005795 362.0
YYD2_k127_5931406_1 Propeptide_C25 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002341 307.0
YYD2_k127_5932964_0 Belongs to the GPI family K01810 - 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006491 384.0
YYD2_k127_5932964_1 Alanine-glyoxylate amino-transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007522 329.0
YYD2_k127_5932964_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002585 317.0
YYD2_k127_5932964_3 (Rhomboid) family - - - 0.0000000000000000000000000000000000000000000003501 171.0
YYD2_k127_5932964_4 tetratricopeptide repeat - - - 0.00000000000000006967 91.0
YYD2_k127_5932964_5 YacP-like NYN domain K06962 - - 0.000001573 57.0
YYD2_k127_5935429_0 NADH-quinone oxidoreductase chain L K00341 - 1.6.5.3 2.394e-204 661.0
YYD2_k127_5935429_1 NAD binding K00333,K13378 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 495.0
YYD2_k127_5935429_10 SpoU rRNA Methylase family - - - 0.00000000000000000000000000000000000000005569 158.0
YYD2_k127_5935429_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000002778 163.0
YYD2_k127_5935429_12 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K03615,K05580 - 1.6.5.3 0.0000000000000000000000000000000000001129 148.0
YYD2_k127_5935429_13 NADH dehydrogenase (ubiquinone) activity K00330,K05574 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.00000000000000000000000000000000001942 140.0
YYD2_k127_5935429_14 protein phosphatase 2C domain protein K20074 GO:0000287,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004647,GO:0004721,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010563,GO:0010605,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0030145,GO:0030312,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0036211,GO:0042325,GO:0042326,GO:0042578,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043392,GO:0043412,GO:0043549,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0045859,GO:0045936,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051098,GO:0051100,GO:0051101,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 3.1.3.16 0.0000000000000000000000000000000002029 143.0
YYD2_k127_5935429_15 PFAM NADH-ubiquinone plastoquinone oxidoreductase, chain 6 K00339 - 1.6.5.3 0.000000000000000000000000000000001371 139.0
YYD2_k127_5935429_16 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000001103 119.0
YYD2_k127_5935429_17 Transglutaminase-like superfamily - - - 0.00000000000000002504 96.0
YYD2_k127_5935429_18 protein conserved in bacteria - - - 0.0000000006682 67.0
YYD2_k127_5935429_2 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005084 465.0
YYD2_k127_5935429_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005944 408.0
YYD2_k127_5935429_4 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000044 385.0
YYD2_k127_5935429_5 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 385.0
YYD2_k127_5935429_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337,K05572 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0008137,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0044237,GO:0045333,GO:0050136,GO:0055114 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000441 359.0
YYD2_k127_5935429_7 Sugar (and other) transporter K08151 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 331.0
YYD2_k127_5935429_8 lyase activity K01387,K03301 - 3.4.24.3 0.0000000000000000000000000000000000000000000000000000000000000000000196 267.0
YYD2_k127_5935429_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000005161 241.0
YYD2_k127_5938989_0 TilS substrate binding domain K04075 - 6.3.4.19 0.0000000000000000000000000000000000000000000001901 186.0
YYD2_k127_5945704_0 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007666 248.0
YYD2_k127_5945704_1 CHAT domain - - - 0.0000000000004032 83.0
YYD2_k127_5956557_0 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 418.0
YYD2_k127_5956557_1 pfam abc K01990,K09695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005342 330.0
YYD2_k127_5956557_2 ABC-2 family transporter protein K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000732 274.0
YYD2_k127_5956557_3 Protein of unknown function (DUF933) K06942 - - 0.00000000000000000000000000000000000000000000000000000000003891 226.0
YYD2_k127_5956557_4 protein secretion K20276 - - 0.000000000000004899 87.0
YYD2_k127_5956557_6 Domain of unknown function (DUF1736) - GO:0001763,GO:0002009,GO:0003401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0009887,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010604,GO:0012505,GO:0019222,GO:0030154,GO:0030162,GO:0030323,GO:0030324,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033554,GO:0034976,GO:0035239,GO:0035295,GO:0040007,GO:0042176,GO:0042692,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048286,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048729,GO:0048731,GO:0048747,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051146,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0055001,GO:0055002,GO:0060255,GO:0060425,GO:0060429,GO:0060441,GO:0060447,GO:0060541,GO:0060560,GO:0060562,GO:0060602,GO:0061061,GO:0061136,GO:0061138,GO:0065007,GO:0080090,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364 - 0.000155 55.0
YYD2_k127_5967779_0 Transmembrane exosortase (Exosortase_EpsH) - - - 0.00000000000000000000000000000000000002822 159.0
YYD2_k127_5967779_1 Chain length determinant protein K16692 - - 0.00000000000000000000000000006144 135.0
YYD2_k127_5967779_2 COG1596 Periplasmic protein involved in polysaccharide export K01991 - - 0.0000000000000000000001419 113.0
YYD2_k127_5967779_3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K03606 - - 0.000000000004623 77.0
YYD2_k127_5967779_4 TIGRFAM EpsI family protein - - - 0.000001332 60.0
YYD2_k127_5997997_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006699 434.0
YYD2_k127_5997997_1 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000441 276.0
YYD2_k127_5997997_2 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000008811 202.0
YYD2_k127_5997997_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000001148 129.0
YYD2_k127_6005700_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002954 314.0
YYD2_k127_6005700_1 COG1520 FOG WD40-like repeat K17713 - - 0.0000000001665 74.0
YYD2_k127_6005700_2 PEGA domain - - - 0.000276 53.0
YYD2_k127_6007899_0 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007417 355.0
YYD2_k127_6007899_1 Bacterial sugar transferase K03606 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006555 297.0
YYD2_k127_6007899_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004151 286.0
YYD2_k127_6007899_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000001291 218.0
YYD2_k127_6007899_4 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000000000000000000001107 127.0
YYD2_k127_6008518_0 L-asparaginase II - - - 0.0000000000006201 74.0
YYD2_k127_6008518_1 TonB-dependent receptor K02014 - - 0.000002697 61.0
YYD2_k127_6010817_0 PrkA AAA domain K07180 - - 1.225e-296 917.0
YYD2_k127_6010817_1 Fic/DOC family N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 531.0
YYD2_k127_6010817_2 PFAM SpoVR like protein K06415 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 505.0
YYD2_k127_6010817_3 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 499.0
YYD2_k127_6010817_4 Belongs to the UPF0229 family K09786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003108 416.0
YYD2_k127_6010817_5 3-Demethylubiquinone-9 3-methyltransferase K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000006166 163.0
YYD2_k127_6010817_6 PrkA AAA domain K07180 - - 0.0000000000000000000000000000001771 143.0
YYD2_k127_6010817_7 Type I restriction-modification system methyltransferase subunit K03427 - 2.1.1.72 0.00000000000000000000000000001839 122.0
YYD2_k127_601307_0 two component, sigma54 specific, transcriptional regulator, Fis family K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005863 270.0
YYD2_k127_601998_0 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000004481 265.0
YYD2_k127_601998_1 - - - - 0.000000000000000000000000000000000000000000000000002734 190.0
YYD2_k127_6026187_0 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 486.0
YYD2_k127_6026187_1 PFAM thiamine pyrophosphate protein domain protein TPP-binding K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008187 310.0
YYD2_k127_6026187_2 Transcriptional regulatory protein, C terminal K02483 - - 0.0000000000000000005491 91.0
YYD2_k127_6029867_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02372,K02535,K13599,K16363 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0019171 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002727 449.0
YYD2_k127_6029867_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002483 332.0
YYD2_k127_6029867_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000006715 259.0
YYD2_k127_6029867_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000002702 226.0
YYD2_k127_6029867_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.00000000000000000000000000000000000000000000000000002423 192.0
YYD2_k127_6029867_5 Domain of unknown function (DUF374) K02527,K09778 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000009861 182.0
YYD2_k127_6031504_0 ABC transporter K02056 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 448.0
YYD2_k127_6031504_1 Belongs to the binding-protein-dependent transport system permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006483 439.0
YYD2_k127_6031504_2 ABC-type sugar transport system periplasmic component K10439 - - 0.000000000000000000000000000000000000000000000000000000000000000000008768 241.0
YYD2_k127_6033494_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K07306,K17050 - 1.7.5.1,1.8.5.3 0.0 1371.0
YYD2_k127_6033494_1 nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 503.0
YYD2_k127_6033631_0 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000007791 213.0
YYD2_k127_6033631_1 PFAM ABC transporter related K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000009987 182.0
YYD2_k127_6033631_2 nucleotidyltransferase activity - - - 0.0000000000000000000002343 106.0
YYD2_k127_6033631_3 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.00000000000000000001494 106.0
YYD2_k127_6033631_4 - - - - 0.000000000192 67.0
YYD2_k127_6042_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 432.0
YYD2_k127_6042_1 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 316.0
YYD2_k127_6042_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000009381 155.0
YYD2_k127_6042_3 Aerotolerance regulator N-terminal - - - 0.00000000001301 73.0
YYD2_k127_6054044_0 COG0798 Arsenite efflux pump ACR3 and related K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 507.0
YYD2_k127_6054044_1 Predicted permease K07089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 354.0
YYD2_k127_6054044_2 Low molecular weight phosphatase family - - - 0.0000000000000000000000000000000000008742 141.0
YYD2_k127_6054044_3 redox-active disulfide protein 2 - - - 0.00000000000000279 89.0
YYD2_k127_6070462_0 photosynthesis - - - 0.0000000000000000000000000000000001175 139.0
YYD2_k127_6070462_1 - - - - 0.00000000000936 73.0
YYD2_k127_6070462_2 PDZ domain (Also known as DHR or GLGF) - - - 0.0000000000364 72.0
YYD2_k127_6070462_3 Peptidase family C25 - - - 0.00001636 57.0
YYD2_k127_6070691_0 Endonuclease I - - - 0.000000000000000001765 88.0
YYD2_k127_6070691_1 acylphosphatase activity K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.00000000000000000214 87.0
YYD2_k127_6076967_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004953 591.0
YYD2_k127_6085986_0 DNA-templated transcription, initiation - - - 0.0000000000000000000000000000006059 136.0
YYD2_k127_6091997_0 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006726 411.0
YYD2_k127_6091997_1 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005787 289.0
YYD2_k127_6091997_2 Protein of unknown function (DUF971) - - - 0.00000000000000000001285 98.0
YYD2_k127_6091997_3 Belongs to the DegT DnrJ EryC1 family K13017 - 2.6.1.98 0.00000000000000000133 91.0
YYD2_k127_6091997_4 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.0000003331 63.0
YYD2_k127_610067_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 505.0
YYD2_k127_610067_1 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 295.0
YYD2_k127_610067_2 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004242 282.0
YYD2_k127_610067_3 Protein of unknown function (DUF2400) - - - 0.000000000000000000000000000000000000000000000000000000000000002583 230.0
YYD2_k127_610067_4 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000005951 199.0
YYD2_k127_610067_5 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000006966 172.0
YYD2_k127_610067_6 Probable molybdopterin binding domain - - - 0.0000000000000000000000000000000000000001072 164.0
YYD2_k127_610067_7 Thioredoxin-like - - - 0.00000000000000000000000000001503 124.0
YYD2_k127_615633_0 COG0076 Glutamate decarboxylase and related PLP-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008026 406.0
YYD2_k127_615633_1 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000001181 154.0
YYD2_k127_6171907_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000009338 175.0
YYD2_k127_6177026_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 1.829e-312 984.0
YYD2_k127_6177026_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 539.0
YYD2_k127_6177026_2 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004577 486.0
YYD2_k127_6177026_3 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 484.0
YYD2_k127_6177026_4 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000002377 218.0
YYD2_k127_6177026_5 Methyltransferase domain - - - 0.0000000000000000000000000000003729 138.0
YYD2_k127_6177026_6 Iron-sulfur cluster-binding domain - - - 0.00000000000000000000005505 115.0
YYD2_k127_6177026_7 Sulfurtransferase - - - 0.0000000000000000118 84.0
YYD2_k127_6177026_8 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000003817 92.0
YYD2_k127_6187227_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 344.0
YYD2_k127_6187227_1 - - - - 0.000000000000000000000000000000000000000000000000000000003922 202.0
YYD2_k127_6187227_2 Belongs to the UPF0403 family - - - 0.0000000000000000000000000000001906 134.0
YYD2_k127_6187227_4 O-Antigen ligase K02847,K13009 - - 0.0001692 53.0
YYD2_k127_6187743_0 Phosphate sensor histidine kinase, HAMP and PAS domain-containing K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000008093 252.0
YYD2_k127_6187743_1 PFAM response regulator receiver K02483,K07658,K07668 - - 0.00000000000000000000000000000000000000000000000000000000000002527 231.0
YYD2_k127_6199818_0 - - - - 0.000000000000000000000000000000000001285 154.0
YYD2_k127_6199818_1 PAP2 superfamily - - - 0.000000000000000000000000000000000002335 153.0
YYD2_k127_6199818_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000002952 74.0
YYD2_k127_6199818_4 - - - - 0.0000001312 63.0
YYD2_k127_6201589_0 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002231 522.0
YYD2_k127_6201589_1 LytB protein K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000004019 207.0
YYD2_k127_6209346_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 4.885e-266 844.0
YYD2_k127_6209346_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 500.0
YYD2_k127_6209346_10 - - - - 0.000000001332 65.0
YYD2_k127_6209346_11 Pfam:N_methyl_2 K02650 - - 0.000001263 58.0
YYD2_k127_6209346_12 Prokaryotic N-terminal methylation motif - - - 0.00002353 55.0
YYD2_k127_6209346_2 type II secretion system protein E K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 487.0
YYD2_k127_6209346_3 PFAM Transketolase central region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 397.0
YYD2_k127_6209346_4 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 378.0
YYD2_k127_6209346_5 e3 binding domain K00658,K09699 - 2.3.1.168,2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 375.0
YYD2_k127_6209346_6 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000739 313.0
YYD2_k127_6209346_7 PFAM type II secretion system K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 302.0
YYD2_k127_6209346_8 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000000000003516 220.0
YYD2_k127_6209346_9 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000003569 153.0
YYD2_k127_6213178_0 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 9.038e-287 921.0
YYD2_k127_6213178_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004781 317.0
YYD2_k127_6213178_2 Beta-eliminating lyase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 311.0
YYD2_k127_6213178_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003325 250.0
YYD2_k127_6218756_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975,K20427 - 2.7.7.27,2.7.7.91 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 422.0
YYD2_k127_6218756_1 Nucleotidyl transferase K00975 - 2.7.7.27 0.000002293 52.0
YYD2_k127_6226825_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004007 332.0
YYD2_k127_6226825_1 Peptidase_C39 like family - - - 0.00000005049 61.0
YYD2_k127_6226825_2 - - - - 0.0002614 54.0
YYD2_k127_6228817_0 ABC transporter K02056 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006307 364.0
YYD2_k127_6228817_1 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000003119 157.0
YYD2_k127_6228817_2 PFAM Basic membrane lipoprotein K07335 - - 0.00000000000001726 75.0
YYD2_k127_6232351_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009016 552.0
YYD2_k127_6232351_1 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000568 455.0
YYD2_k127_6232351_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 413.0
YYD2_k127_6232351_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.000000000000000000000000003032 122.0
YYD2_k127_6232351_4 PFAM Protein-tyrosine phosphatase, low molecular weight K01104,K20201 - 3.1.3.48,3.9.1.2 0.00000000000000000000000001048 117.0
YYD2_k127_6235174_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008842 530.0
YYD2_k127_6235174_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003084 404.0
YYD2_k127_6235174_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000008276 220.0
YYD2_k127_6235174_3 riboflavin synthase, alpha K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.000000000000000000000000000000000000000000000000003581 188.0
YYD2_k127_6235174_4 Type IV pilin PilA - - - 0.00002014 52.0
YYD2_k127_6237473_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 1.445e-289 904.0
YYD2_k127_6237473_1 COG0463 Glycosyltransferases involved in cell wall biogenesis K13693 - 2.4.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 600.0
YYD2_k127_6237473_2 glycosyl transferase family 2 K21349 - 2.4.1.268 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 552.0
YYD2_k127_6237473_3 MOFRL family K11529 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007668 333.0
YYD2_k127_6237473_4 transmembrane transport - - - 0.000000000000000000000000000000000000000000000000000000000004942 215.0
YYD2_k127_6240282_0 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein K08282 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 435.0
YYD2_k127_6269632_0 MutL protein K00854 - 2.7.1.17 2.395e-255 810.0
YYD2_k127_6269632_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008408 452.0
YYD2_k127_6269632_10 - - - - 0.00000000000188 75.0
YYD2_k127_6269632_11 cellulose binding K00505 - 1.14.18.1 0.00000009568 64.0
YYD2_k127_6269632_2 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 414.0
YYD2_k127_6269632_3 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004248 347.0
YYD2_k127_6269632_4 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 314.0
YYD2_k127_6269632_5 beta-lactamase K01286 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 304.0
YYD2_k127_6269632_6 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000003092 238.0
YYD2_k127_6269632_7 - - - - 0.0000000000000000000000000000000000000000000000000000000005626 220.0
YYD2_k127_6269632_8 - - - - 0.00000000000000000000000000000000000000000000000000000002267 204.0
YYD2_k127_6269632_9 - - - - 0.00000000000000004606 86.0
YYD2_k127_6269661_0 Amino acid transporter K03305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004402 451.0
YYD2_k127_6269661_1 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000614 445.0
YYD2_k127_6269661_2 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000000000001863 163.0
YYD2_k127_6269661_3 Bacterial transcriptional activator domain - - - 0.000008983 57.0
YYD2_k127_6277183_0 COGs COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 321.0
YYD2_k127_6277183_1 lipoprotein transporter activity K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 311.0
YYD2_k127_6277183_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009726 313.0
YYD2_k127_6277183_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003652 262.0
YYD2_k127_6277183_4 PFAM outer membrane efflux protein - - - 0.00000001026 66.0
YYD2_k127_6281377_0 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0030091,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000012 221.0
YYD2_k127_6281377_1 purine ribonucleoside salvage K00759 - 2.4.2.7 0.000000000000000000000000000000000000000000000003066 181.0
YYD2_k127_6281377_2 Helix-turn-helix domain - - - 0.000000000002061 78.0
YYD2_k127_6285703_0 synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007472 382.0
YYD2_k127_6285703_1 Endonuclease exonuclease phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006579 273.0
YYD2_k127_6285703_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000008889 178.0
YYD2_k127_6285703_3 - - - - 0.0000000000000001486 94.0
YYD2_k127_6285703_4 Tetratricopeptide repeat - - - 0.00000000003063 73.0
YYD2_k127_6286760_0 Cys Met metabolism K01739,K01758 - 2.5.1.48,4.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004717 327.0
YYD2_k127_6286760_1 Mechanosensitive ion channel K03442 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002229 247.0
YYD2_k127_6286760_10 peptidyl-tyrosine sulfation - - - 0.00000000000685 79.0
YYD2_k127_6286760_2 TIGRFAM cation diffusion facilitator family transporter K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000872 238.0
YYD2_k127_6286760_3 naringenin-chalcone synthase K16167 - - 0.000000000000000000000000000000000000000000000000000005298 214.0
YYD2_k127_6286760_4 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000002068 188.0
YYD2_k127_6286760_5 FAD binding domain - - - 0.0000000000000000000000000000000000000000000005828 183.0
YYD2_k127_6286760_6 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000005251 147.0
YYD2_k127_6286760_7 G5 domain protein - - - 0.0000000000000000000000000006288 124.0
YYD2_k127_6286760_8 Peptidase family M48 - - - 0.00000000000000000000003405 116.0
YYD2_k127_6286760_9 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000002053 82.0
YYD2_k127_6306171_0 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 378.0
YYD2_k127_6306171_1 PFAM Integrase core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005237 266.0
YYD2_k127_6309756_0 extracellular polysaccharide biosynthetic process K01153,K05789,K07011,K16554 - 3.1.21.3 0.00000000000000000000000000000000000000000003626 176.0
YYD2_k127_6309756_1 Redoxin K03564 - 1.11.1.15 0.0000000004224 61.0
YYD2_k127_6309756_2 Redoxin K03564 - 1.11.1.15 0.0000000004769 67.0
YYD2_k127_632712_0 Histidine kinase - - - 0.00000000000000000000000000000000000000786 164.0
YYD2_k127_632712_1 PFAM response regulator receiver - - - 0.0000000000000000000000008135 115.0
YYD2_k127_632712_2 PFAM Phosphoglucomutase phosphomannomutase, alpha beta alpha domain K01840 - 5.4.2.8 0.00000000506 63.0
YYD2_k127_632935_0 3-isopropylmalate dehydrogenase activity K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 604.0
YYD2_k127_632935_1 prosthetic group binding K01644,K01646,K18292 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0008815,GO:0009346,GO:0009987,GO:0015980,GO:0016829,GO:0016830,GO:0016833,GO:0032991,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114 4.1.3.25,4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008269 460.0
YYD2_k127_632935_2 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009469 445.0
YYD2_k127_632935_3 Citrate lyase, alpha subunit (CitF) K01643 - 2.8.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007415 377.0
YYD2_k127_632935_4 Multi-sensor signal transduction histidine kinase K07710 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000008466 280.0
YYD2_k127_632935_5 Belongs to the ompA family K03640 - - 0.00000000000001441 83.0
YYD2_k127_6374529_0 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003396 426.0
YYD2_k127_6374529_1 COGs COG1392 Phosphate transport regulator (distant homolog of PhoU) K07220 - - 0.000000000000000000000000000000000000000000000000000725 192.0
YYD2_k127_6374529_2 ABC-2 family transporter protein - - - 0.00000000000000000000000000000000000000000004814 175.0
YYD2_k127_6374529_3 Bacterial transcriptional activator domain - - - 0.0000000000003396 74.0
YYD2_k127_6374529_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00004302 56.0
YYD2_k127_6379499_0 Carbamoyltransferase C-terminus K00612 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 426.0
YYD2_k127_6379499_1 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000001473 200.0
YYD2_k127_6379499_2 NmrA-like family - - - 0.0000000000000000000000000000000000000219 155.0
YYD2_k127_6391478_0 ABC transporter K02021,K06147,K06148,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000458 616.0
YYD2_k127_6391478_1 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 357.0
YYD2_k127_6391478_2 Bacterial protein of unknown function (DUF885) - - - 0.000008327 50.0
YYD2_k127_6410996_0 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000006951 252.0
YYD2_k127_6410996_1 protein heterodimerization activity - - - 0.000000000000001447 81.0
YYD2_k127_649864_0 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 1.33e-286 918.0
YYD2_k127_649864_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 1.321e-199 638.0
YYD2_k127_649864_2 Kinase/pyrophosphorylase K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000007949 222.0
YYD2_k127_658333_0 phosphorelay signal transduction system K02481,K07713,K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 510.0
YYD2_k127_658333_1 HAMP domain K02482 - 2.7.13.3 0.00000000000000000000000000000000000004231 149.0
YYD2_k127_658333_2 Peptidase family M54 K06974 - - 0.0000000000000000000000001531 122.0
YYD2_k127_66036_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000696 432.0
YYD2_k127_66036_1 Belongs to the ATCase OTCase family K00608,K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008254 411.0
YYD2_k127_66036_2 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.0000000000000000000000000000000000732 134.0
YYD2_k127_66036_3 Tetratricopeptide repeat - - - 0.00000001246 68.0
YYD2_k127_662604_0 Tetratrico peptide repeat - - - 0.00000000000006685 85.0
YYD2_k127_662604_1 Acetyltransferase (GNAT) family - - - 0.0000000000003568 70.0
YYD2_k127_662604_2 GCN5 family acetyltransferase - - - 0.000000000004643 70.0
YYD2_k127_662604_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000005823 58.0
YYD2_k127_691608_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000003107 128.0
YYD2_k127_693438_0 Putative esterase - - - 0.000000000000000000000000000000000000000000000133 172.0
YYD2_k127_693438_1 Belongs to the helicase family. AddB RexB type 1 subfamily K16899 - 3.6.4.12 0.0000000000000000000000005872 119.0
YYD2_k127_693438_2 Fibronectin type 3 domain - - - 0.00001016 57.0
YYD2_k127_697669_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00520 - 1.16.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 531.0
YYD2_k127_697669_1 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007807 386.0
YYD2_k127_697669_2 intracellular protease K05520 - 3.5.1.124 0.000000001218 61.0
YYD2_k127_757591_0 Amp-dependent synthetase and ligase K00797,K01897 - 2.5.1.16,6.2.1.3 5.365e-295 962.0
YYD2_k127_757591_1 Belongs to the citrate synthase family K01647 GO:0003674,GO:0003824,GO:0004108,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016740,GO:0016746,GO:0016999,GO:0017144,GO:0019752,GO:0036440,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046912,GO:0055114,GO:0071704,GO:0072350 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 424.0
YYD2_k127_757591_2 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000002299 94.0
YYD2_k127_759491_0 von Willebrand factor (vWF) type A domain K07114,K12511 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001939 309.0
YYD2_k127_759491_1 von Willebrand factor (vWF) type A domain K07114 - - 0.0000000000000000000000000000000000000000000000000000002978 210.0
YYD2_k127_759491_2 - - - - 0.000002302 55.0
YYD2_k127_759491_3 Tetratricopeptide repeat K07114 - - 0.0001109 55.0
YYD2_k127_77966_0 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004212 379.0
YYD2_k127_77966_1 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009247 370.0
YYD2_k127_77966_2 SMART Integrin alpha beta-propellor repeat protein - - - 0.00000000000000000000000000000000000000000000003255 184.0
YYD2_k127_77966_3 Protein kinase domain K08884 - 2.7.11.1 0.00000000000000000003706 96.0
YYD2_k127_795689_0 Aconitase family (aconitate hydratase) K01703,K01704,K01705 - 4.2.1.33,4.2.1.35,4.2.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005027 429.0
YYD2_k127_795689_1 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009655 273.0
YYD2_k127_809952_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 1.914e-248 784.0
YYD2_k127_809952_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006051 373.0
YYD2_k127_809952_10 PFAM polysaccharide export protein K01991 - - 0.000000000000000000000002601 114.0
YYD2_k127_809952_11 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000006507 101.0
YYD2_k127_809952_12 AAA domain K16554 - - 0.00000000000000000008222 98.0
YYD2_k127_809952_13 Chain length determinant protein K16692 - - 0.0000000000000002759 92.0
YYD2_k127_809952_14 Protein of unknown function (DUF503) K09764 - - 0.00000001112 60.0
YYD2_k127_809952_2 Belongs to the peptidase M16 family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 342.0
YYD2_k127_809952_3 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000259 282.0
YYD2_k127_809952_4 SMART AAA ATPase K02450 - - 0.000000000000000000000000000000000000000000000000000000000000002837 227.0
YYD2_k127_809952_5 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000003935 227.0
YYD2_k127_809952_6 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000005068 200.0
YYD2_k127_809952_7 Belongs to the ribF family K11753 GO:0003674,GO:0003824,GO:0003919,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008531,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0044237,GO:0070566 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000006762 203.0
YYD2_k127_809952_8 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000005278 169.0
YYD2_k127_809952_9 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.0000000000000000000000000000005324 124.0
YYD2_k127_810457_0 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001982 278.0
YYD2_k127_810457_1 LVIVD repeat K01179 - 3.2.1.4 0.0000000000000006436 92.0
YYD2_k127_810457_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.00000000304 61.0
YYD2_k127_813393_0 PFAM Pyridoxal-dependent decarboxylase K01593 - 4.1.1.105,4.1.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 405.0
YYD2_k127_813393_1 copper resistance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 299.0
YYD2_k127_813393_2 GcpE protein K03526 - 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000004341 132.0
YYD2_k127_81615_0 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007837 384.0
YYD2_k127_81615_1 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.00000000000000000000000000000000000000001851 162.0
YYD2_k127_81615_2 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000004067 134.0
YYD2_k127_81615_3 ThiS family K03154 - - 0.00000000005601 73.0
YYD2_k127_81615_4 - - - - 0.00002377 55.0
YYD2_k127_816624_0 PFAM acyl-CoA dehydrogenase domain protein K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 502.0
YYD2_k127_816624_1 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000003046 207.0
YYD2_k127_816624_2 Heat shock protein DnaJ domain protein - - - 0.0000000000000000000000000000000001041 153.0
YYD2_k127_816624_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000002134 91.0
YYD2_k127_816624_4 - - - - 0.000000000451 67.0
YYD2_k127_822084_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 3.553e-208 660.0
YYD2_k127_822084_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001048 247.0
YYD2_k127_822084_2 Lipid A biosynthesis K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000001807 178.0
YYD2_k127_822084_3 Bacterial regulatory helix-turn-helix protein, lysR family K04761 - - 0.00000000000000000000000000000000000001675 156.0
YYD2_k127_826365_0 mannose-ethanolamine phosphotransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000009481 239.0
YYD2_k127_826365_1 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000000000000000000000002634 185.0
YYD2_k127_826365_2 arylsulfatase activity - - - 0.00000000000000000000000005533 116.0
YYD2_k127_827398_0 Belongs to the peptidase M16 family K07263 - - 1.997e-315 992.0
YYD2_k127_827398_1 Major royal jelly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009456 382.0
YYD2_k127_827398_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000001549 216.0
YYD2_k127_833463_0 Integral membrane protein TerC family K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 330.0
YYD2_k127_833463_1 cell wall formation K00075 - 1.3.1.98 0.0000000000001153 83.0
YYD2_k127_839276_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000621 293.0
YYD2_k127_839276_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000003375 264.0
YYD2_k127_839276_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.00000000000000000000001947 106.0
YYD2_k127_839276_3 Sporulation and spore germination - - - 0.00000000002074 73.0
YYD2_k127_840678_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002334 309.0
YYD2_k127_847599_0 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000000000000008972 213.0
YYD2_k127_847599_1 response regulator receiver - - - 0.00000000000000000000000000000000006441 154.0
YYD2_k127_847599_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000000002202 92.0
YYD2_k127_849203_0 slime layer polysaccharide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002405 446.0
YYD2_k127_849203_1 Male sterility protein K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000001167 283.0
YYD2_k127_849203_2 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000202 248.0
YYD2_k127_849203_3 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000005833 252.0
YYD2_k127_849203_4 Diacylglycerol kinase catalytic domain (presumed) - - - 0.00000000000000000000000000000000000005181 154.0
YYD2_k127_849203_5 Male sterility protein K01897 - 6.2.1.3 0.0000000000000000000000000000008112 131.0
YYD2_k127_849203_6 Male sterility protein - - - 0.0000000000000000000000000000009142 139.0
YYD2_k127_849203_7 Belongs to the enoyl-CoA hydratase isomerase family K05607 GO:0003674,GO:0003824,GO:0004300,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 4.2.1.18 0.000000000000000000000000000003879 138.0
YYD2_k127_849203_8 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000002062 107.0
YYD2_k127_849203_9 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0005751 51.0
YYD2_k127_865647_0 DNA polymerase K02337,K14162 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000058 433.0
YYD2_k127_869233_0 Tetratricopeptide repeat - - - 0.0000000002463 71.0
YYD2_k127_872177_0 class II (D K and N) K01893 - 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 546.0
YYD2_k127_872177_1 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000002815 177.0
YYD2_k127_872177_2 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.000000008546 65.0
YYD2_k127_872177_3 Biopolymer transport protein ExbD TolR - - - 0.000006928 55.0
YYD2_k127_884389_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 3.225e-225 717.0
YYD2_k127_884389_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 444.0
YYD2_k127_884389_10 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000004181 211.0
YYD2_k127_884389_11 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000000000000000000000000005912 196.0
YYD2_k127_884389_12 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000005277 181.0
YYD2_k127_884389_13 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.00000000000000000000000000000000000000000004103 162.0
YYD2_k127_884389_14 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000009792 164.0
YYD2_k127_884389_15 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000002249 146.0
YYD2_k127_884389_16 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000002659 150.0
YYD2_k127_884389_17 Virulence activator alpha C-term - - - 0.000000000000000000000000000000000007613 145.0
YYD2_k127_884389_18 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000009945 144.0
YYD2_k127_884389_19 Could be involved in septation K06412 - - 0.0000000000000000000000002319 109.0
YYD2_k127_884389_2 Branched-chain amino acid transport system / permease component K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 373.0
YYD2_k127_884389_20 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000007167 105.0
YYD2_k127_884389_21 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000000000002913 93.0
YYD2_k127_884389_22 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000002618 90.0
YYD2_k127_884389_23 Peptidylprolyl isomerase K01802,K03769 - 5.2.1.8 0.0000000003473 72.0
YYD2_k127_884389_24 protein trimerization K02453 - - 0.000002021 60.0
YYD2_k127_884389_25 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.000003333 58.0
YYD2_k127_884389_3 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 367.0
YYD2_k127_884389_4 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 357.0
YYD2_k127_884389_5 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042,K17468 - 2.9.1.1,4.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000264 349.0
YYD2_k127_884389_6 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 314.0
YYD2_k127_884389_7 ABC transporter, ATP-binding protein K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007752 293.0
YYD2_k127_884389_8 PFAM UbiA prenyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009055 268.0
YYD2_k127_884389_9 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000001982 212.0
YYD2_k127_885007_0 PFAM YicC-like family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000007107 241.0
YYD2_k127_885007_1 guanylate kinase activity K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00000000000000000000000000000000000000000001414 169.0
YYD2_k127_885007_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000001212 143.0
YYD2_k127_885007_3 protein histidine kinase activity K07315,K07641,K10819,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61,3.1.3.3 0.00000000000000000000000000201 125.0
YYD2_k127_897415_0 Peptidase S8 - - - 0.00000000000000000000000000000000000000000000000000000000000000001664 245.0
YYD2_k127_897415_1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K01802,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000001399 181.0
YYD2_k127_897415_2 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000000000000000000000000000000117 150.0
YYD2_k127_897415_3 Evidence 5 No homology to any previously reported sequences - - - 0.0000000002753 73.0
YYD2_k127_897415_4 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000001756 64.0
YYD2_k127_897415_5 Tetratricopeptide repeat - - - 0.0000001756 64.0
YYD2_k127_897415_6 LVIVD repeat K01179 - 3.2.1.4 0.000331 54.0
YYD2_k127_923608_0 ADP binding K21405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 352.0
YYD2_k127_924676_0 PFAM DAHP synthetase I K03856 - 2.5.1.54 0.0000000000000000000002104 102.0
YYD2_k127_924676_1 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000001281 104.0
YYD2_k127_924676_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000005493 93.0
YYD2_k127_929952_0 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005152 422.0
YYD2_k127_929952_1 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000001975 226.0
YYD2_k127_929952_2 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000005082 108.0
YYD2_k127_929952_3 CHAT domain - - - 0.0000000000000000000007623 108.0
YYD2_k127_930923_0 protein related to plant photosystem II stability assembly factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 558.0
YYD2_k127_930923_1 TIGRFAM ornithine aminotransferase K00819 - 2.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 553.0
YYD2_k127_930923_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 294.0
YYD2_k127_930923_3 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001502 271.0
YYD2_k127_930923_4 ThiS family K03636 - - 0.00000000000000000006286 104.0
YYD2_k127_930923_5 mechanosensitive ion channel - - - 0.0000000000009432 81.0
YYD2_k127_933158_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009259,GO:0009605,GO:0009987,GO:0009991,GO:0015969,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0019637,GO:0019693,GO:0030312,GO:0031667,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042278,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046128,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:1901068,GO:1901135,GO:1901360,GO:1901564,GO:1901657 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 576.0
YYD2_k127_933158_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000112 270.0
YYD2_k127_933158_2 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000001283 179.0
YYD2_k127_933158_3 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000004402 171.0
YYD2_k127_933158_4 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.0000000005531 64.0
YYD2_k127_93607_0 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000002013 261.0
YYD2_k127_93607_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000356 264.0
YYD2_k127_93607_2 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000002055 222.0
YYD2_k127_93607_3 aminopeptidase activity - - - 0.000000000000503 79.0
YYD2_k127_948900_0 DNA polymerase X family K02347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005387 375.0
YYD2_k127_948900_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000134 235.0
YYD2_k127_948900_2 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.000000001652 62.0
YYD2_k127_948901_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 472.0
YYD2_k127_948901_1 metallophosphoesterase K09769 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 315.0
YYD2_k127_948901_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 333.0
YYD2_k127_948901_3 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000005887 195.0
YYD2_k127_948901_4 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0000900,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006355,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030371,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000833 134.0
YYD2_k127_948901_5 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000001383 72.0
YYD2_k127_948901_6 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0001978 49.0
YYD2_k127_952187_0 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003072 292.0
YYD2_k127_952187_1 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate - - - 0.0000000000000000000000000000000001024 142.0
YYD2_k127_952187_2 Protein of unknown function (DUF998) - - - 0.0000000000000000000000000000001093 140.0
YYD2_k127_952679_0 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 596.0
YYD2_k127_952679_1 GHMP kinases C terminal K07031 - 2.7.1.168 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 377.0
YYD2_k127_952679_2 glycogen (starch) synthase activity K00703,K00754 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 331.0
YYD2_k127_952679_3 glyoxalase III activity - - - 0.000000000000000000000000000000000000000000000000000000000000000005597 229.0
YYD2_k127_952679_4 3-demethylubiquinone-9 3-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000002029 220.0
YYD2_k127_952679_5 - - - - 0.00000000000000000000000000000000000000000000000000000000004145 211.0
YYD2_k127_952679_6 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000107 208.0
YYD2_k127_952679_7 Glyoxalase-like domain K06996 - - 0.000000000000000000000000000000000000000001838 160.0
YYD2_k127_952679_9 - - - - 0.00000000000002934 81.0
YYD2_k127_956948_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 9.916e-197 632.0
YYD2_k127_956948_1 PFAM pyridoxamine 5-phosphate K07006 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001422 269.0
YYD2_k127_958468_0 Penicillin-binding protein 2 K05515 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0045229,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0071972,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 403.0
YYD2_k127_958468_1 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 301.0
YYD2_k127_958468_2 'Xanthine and CO dehydrogenases maturation factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009266 269.0
YYD2_k127_958468_3 methyltransferase - - - 0.00000000000000000000000000000000000000006153 159.0
YYD2_k127_958468_4 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.00000000000000000000000000000000004088 151.0
YYD2_k127_958468_5 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000001761 96.0
YYD2_k127_958468_6 rod shape-determining protein MreD K03571 - - 0.00004689 55.0
YYD2_k127_960397_0 Aromatic amino acid lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 530.0
YYD2_k127_960397_1 ATP ADP translocase K03301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001492 256.0
YYD2_k127_960397_2 Aromatic amino acid lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000002329 191.0
YYD2_k127_960397_3 Phenylalanine-4-hydroxylase K00500 GO:0003674,GO:0003824,GO:0004497,GO:0004505,GO:0006082,GO:0006520,GO:0006558,GO:0006559,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016491,GO:0016705,GO:0016714,GO:0017144,GO:0019439,GO:0019752,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222 1.14.16.1 0.000000000000000000000000000000000000000000012 169.0
YYD2_k127_982177_0 Urocanase C-terminal domain K01712 - 4.2.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 562.0
YYD2_k127_982177_1 PFAM Amidohydrolase family K01468 - 3.5.2.7 0.00000000000000000000000000000000001798 151.0
YYD2_k127_98445_0 PFAM Type II secretion system protein E K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003117 302.0
YYD2_k127_98445_1 Type II and III secretion system protein K02453,K02666 - - 0.000000000000000000000000000000502 128.0
YYD2_k127_98445_2 Zinc metalloprotease (Elastase) - - - 0.0000000000000000000003111 102.0
YYD2_k127_990335_0 Predicted permease K07089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009295 597.0
YYD2_k127_990335_1 Cytochrome C biogenesis protein - - - 0.0000000000000000000000000000000000000000000000000000000003246 218.0
YYD2_k127_990335_2 arsenical-resistance protein K03325 - - 0.0000000000000000000000000000000001876 134.0
YYD2_k127_990335_3 COG0526, thiol-disulfide isomerase and thioredoxins K02199 - - 0.00000000000000000000000000007246 128.0
YYD2_k127_990335_4 TIGRFAM redox-active disulfide protein 2 - - - 0.00000000000000001177 94.0