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Overview

ID MAG04645
Name YYD3_bin.12
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Vicinamibacteria
Order Vicinamibacterales
Family UBA2999
Genus Gp6-AA40
Species
Assembly information
Completeness (%) 73.71
Contamination (%) 3.24
GC content (%) 65.0
N50 (bp) 13,667
Genome size (bp) 4,135,746

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3403

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_100005_0 VWA-like domain (DUF2201) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006491 270.0
YYD3_k127_100005_1 - - - - 0.000000000000000000000000001053 125.0
YYD3_k127_100005_2 Glycosyl transferase family 2 - - - 0.000000004314 67.0
YYD3_k127_1010776_0 Protein kinase domain K12132 - 2.7.11.1 2.273e-223 722.0
YYD3_k127_1010776_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 337.0
YYD3_k127_1010776_10 Regulator of nitric oxide reductase transcription K19339 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000005325 70.0
YYD3_k127_1010776_11 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000001932 73.0
YYD3_k127_1010776_12 - - - - 0.000007489 54.0
YYD3_k127_1010776_2 Metal-dependent hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 329.0
YYD3_k127_1010776_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 322.0
YYD3_k127_1010776_4 DNA topological change K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000001916 248.0
YYD3_k127_1010776_5 - - - - 0.000000000000000000000000000000001553 135.0
YYD3_k127_1010776_6 4Fe-4S binding domain - - - 0.000000000000000000000000005878 123.0
YYD3_k127_1010776_7 PFAM YeeE YedE family (DUF395) K07112 - - 0.0000000000000000000002696 109.0
YYD3_k127_1010776_8 PFAM YeeE YedE family (DUF395) K07112 - - 0.00000000000000000001559 101.0
YYD3_k127_1010776_9 serine-type D-Ala-D-Ala carboxypeptidase activity K07259 - 3.4.16.4 0.00000000004248 67.0
YYD3_k127_1031106_0 Dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 497.0
YYD3_k127_1031106_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.000000000000000000000000001257 114.0
YYD3_k127_1031106_2 Rhodanese Homology Domain - - - 0.00000000000000000000001439 100.0
YYD3_k127_1035804_0 DNA topological change K03168 - 5.99.1.2 9.149e-238 760.0
YYD3_k127_1035804_1 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 452.0
YYD3_k127_1035804_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000002057 218.0
YYD3_k127_1035804_3 Ankyrin repeat - - - 0.000000000000005022 80.0
YYD3_k127_1148701_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 488.0
YYD3_k127_1148701_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000004194 267.0
YYD3_k127_1148701_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000001326 158.0
YYD3_k127_1159289_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 566.0
YYD3_k127_1159289_1 ImcF-related N-terminal domain K11891 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005437 546.0
YYD3_k127_1159289_10 regulatory protein, MerR - - - 0.000000000001044 76.0
YYD3_k127_1159289_11 dehydrogenase - - - 0.000001483 52.0
YYD3_k127_1159289_2 type VI secretion protein K11893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009164 477.0
YYD3_k127_1159289_3 Type IV VI secretion system protein, DotU family K11892 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 395.0
YYD3_k127_1159289_4 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 383.0
YYD3_k127_1159289_5 Forkhead associated domain K11894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008031 263.0
YYD3_k127_1159289_6 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000001023 225.0
YYD3_k127_1159289_7 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000002113 209.0
YYD3_k127_1159289_8 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000000000000005507 125.0
YYD3_k127_1159289_9 protein conserved in bacteria K11906 - - 0.000000000000000000000000002423 118.0
YYD3_k127_1175077_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 6.549e-298 931.0
YYD3_k127_1175077_1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000004269 229.0
YYD3_k127_1175077_2 Protein tyrosine kinase - - - 0.000000000000000000000000000000000000000000000000000000001915 220.0
YYD3_k127_1175077_3 ECF sigma factor - - - 0.000000000000000000000000000000000000000001051 166.0
YYD3_k127_1188927_0 Pyrrolo-quinoline quinone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000259 281.0
YYD3_k127_1188927_1 PFAM RNA binding S1 domain protein K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001208 279.0
YYD3_k127_1188927_2 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K03790,K03825,K06718 GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031248,GO:0031365,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564,GO:1902493,GO:1902494,GO:1990234 2.3.1.128,2.3.1.178 0.00000000000000000000000000000000000000000000000000000000000000000000000006744 256.0
YYD3_k127_1188927_3 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000004755 222.0
YYD3_k127_1188927_4 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000001476 187.0
YYD3_k127_1188927_5 Two component transcriptional regulator, winged helix family K02483 - - 0.00000000000000000000000000000009475 141.0
YYD3_k127_1188927_6 - - - - 0.000000000001169 72.0
YYD3_k127_1200250_0 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007419 393.0
YYD3_k127_1200250_1 MASE1 - - - 0.00000000000000000000000000000000000000009195 168.0
YYD3_k127_1200250_2 HD domain - - - 0.0000000000000000000234 105.0
YYD3_k127_1204281_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006594 599.0
YYD3_k127_1204281_1 Glucose / Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 350.0
YYD3_k127_1204281_10 phenazine biosynthesis protein PhzF family K06998 - 5.3.3.17 0.0000000000008086 75.0
YYD3_k127_1204281_2 Belongs to the ABC transporter superfamily K10112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005012 344.0
YYD3_k127_1204281_3 PFAM extracellular solute-binding protein family 1 K02027,K10236 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 294.0
YYD3_k127_1204281_4 binding-protein-dependent transport systems inner membrane component K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002198 267.0
YYD3_k127_1204281_5 PFAM binding-protein-dependent transport systems inner membrane component K02025,K10237 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009782 267.0
YYD3_k127_1204281_6 protein methyltransferase activity K02687 - - 0.000000000000000000000000000000000000000000000000000000000000000001445 238.0
YYD3_k127_1204281_8 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000006072 154.0
YYD3_k127_1204281_9 GntR family transcriptional regulator K07979 - - 0.00000000000000003861 85.0
YYD3_k127_1225080_0 xanthine dehydrogenase activity - - - 0.0 1131.0
YYD3_k127_1225080_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 1.11e-197 626.0
YYD3_k127_1225080_2 Domain of unknown function (DUF4178) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005129 422.0
YYD3_k127_1225080_3 DinB family - - - 0.0000000000000000000000000000000000000000000000000000000000001079 216.0
YYD3_k127_1225080_4 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS CutS homologs K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000007237 197.0
YYD3_k127_1225080_5 S-adenosylmethionine decarboxylase K01611 - 4.1.1.50 0.00000000000000000000000000000008477 128.0
YYD3_k127_1225080_6 Domain of Unknown Function (DUF350) - - - 0.00000000000001498 77.0
YYD3_k127_1225080_7 - - - - 0.00000000003846 74.0
YYD3_k127_1225080_8 Protein of unknown function (DUF3617) - - - 0.000000003803 64.0
YYD3_k127_1232509_0 surface antigen variable number - - - 0.00000000000000000000000000512 128.0
YYD3_k127_1232509_1 Carboxypeptidase regulatory-like domain - - - 0.0000008962 61.0
YYD3_k127_1242183_0 PQQ-like domain K00114 - 1.1.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 501.0
YYD3_k127_1242183_1 Cytochrome c - - - 0.0000000000000000000000003083 115.0
YYD3_k127_1242183_2 Phosphoesterase PA-phosphatase - - - 0.0000000000000000000005754 109.0
YYD3_k127_1242183_3 lactoylglutathione lyase activity - - - 0.0001261 51.0
YYD3_k127_1268432_0 NMT1-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003229 567.0
YYD3_k127_1268432_1 COG0600 ABC-type nitrate sulfonate bicarbonate transport system permease component K15577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008541 345.0
YYD3_k127_1268432_2 Alginate export - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003304 325.0
YYD3_k127_1268432_3 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008741 289.0
YYD3_k127_1268432_4 COG1116 ABC-type nitrate sulfonate K15578 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003929 247.0
YYD3_k127_1268432_5 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000001579 220.0
YYD3_k127_1268432_6 NUDIX domain - - - 0.00000000000000000000000004887 110.0
YYD3_k127_1268604_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008829 283.0
YYD3_k127_1268604_1 PFAM Glycosyl transferase, group 1 K06338,K12995 - 2.4.1.348 0.000000000000000000000000000000000000000000000000000000000000000001424 250.0
YYD3_k127_1268604_2 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000001606 211.0
YYD3_k127_1268604_3 lipopolysaccharide 3-alpha-galactosyltransferase activity - - - 0.000000000000000000000000000000000004771 148.0
YYD3_k127_1268604_4 Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2- acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway K15521 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009987,GO:0010125,GO:0010126,GO:0016137,GO:0016138,GO:0016740,GO:0016757,GO:0016758,GO:0044237,GO:0044249,GO:0044272,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1901657,GO:1901659 2.4.1.250 0.0000000000000000000178 104.0
YYD3_k127_1268604_5 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.00000000009336 72.0
YYD3_k127_1268604_6 TIGRFAM geranylgeranyl reductase - - - 0.000000002329 60.0
YYD3_k127_1268604_7 tRNA (guanine(37)-N(1))-methyltransferase activity - - - 0.0003993 52.0
YYD3_k127_1299999_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008558 274.0
YYD3_k127_1299999_1 RNA polymerase, sigma-24 subunit, ECF subfamily K02405 - - 0.00000000000000000000000000000000000000000000000000000000002687 211.0
YYD3_k127_1299999_2 Protein kinase domain K12132 - 2.7.11.1 0.00000000689 61.0
YYD3_k127_1299999_3 40-residue YVTN family beta-propeller repeat - - - 0.00000007536 64.0
YYD3_k127_134148_0 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 349.0
YYD3_k127_134148_1 nuclease activity - - - 0.0000000000000000000000000000000002459 135.0
YYD3_k127_134148_2 Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) K08680 - 4.2.99.20 0.0000000000000000000000000000000003321 139.0
YYD3_k127_1357398_0 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 455.0
YYD3_k127_1357398_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008677,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 1.1.1.169 0.0000000000000000000000000000000000000000000000000002968 203.0
YYD3_k127_1357398_10 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0007861 52.0
YYD3_k127_1357398_2 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000001169 191.0
YYD3_k127_1357398_3 PFAM SAF domain K02279 - - 0.0000000000000000000000000000000000000000001004 168.0
YYD3_k127_1357398_4 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000000000000000001831 156.0
YYD3_k127_1357398_5 PFAM Peptidase A24A, prepilin type IV K02278 - 3.4.23.43 0.000000000000000001102 93.0
YYD3_k127_1357398_6 Glycosyltransferase family 87 - - - 0.00000000007692 76.0
YYD3_k127_1357398_7 TadE-like protein - - - 0.00000002131 62.0
YYD3_k127_1357398_8 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000002221 64.0
YYD3_k127_1357398_9 Flp Fap pilin component K02651 - - 0.0000292 51.0
YYD3_k127_14092_0 lysine biosynthetic process via aminoadipic acid - - - 1.297e-213 706.0
YYD3_k127_14092_1 Protein of unknown function (DUF3500) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 525.0
YYD3_k127_14092_2 COG0644 Dehydrogenases (flavoproteins) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006441 494.0
YYD3_k127_14092_3 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 452.0
YYD3_k127_14092_4 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006279 439.0
YYD3_k127_14092_5 Putative neutral zinc metallopeptidase K07054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 327.0
YYD3_k127_14092_6 PFAM OsmC family protein K04063 - - 0.0000000000000000000000000000000000000000000000000000000614 205.0
YYD3_k127_14092_7 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000000000000000000000000000005656 166.0
YYD3_k127_1428002_0 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007882 349.0
YYD3_k127_1428002_1 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 299.0
YYD3_k127_1428002_2 PepSY-associated TM region - - - 0.00000000000000000000000000000000000000000000006611 182.0
YYD3_k127_1428002_3 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.0000000000000000000000000000000000000001092 159.0
YYD3_k127_1428002_4 - - - - 0.000008418 55.0
YYD3_k127_1442807_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000699 225.0
YYD3_k127_1442807_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000001247 70.0
YYD3_k127_144588_0 Pirin C-terminal cupin domain K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 454.0
YYD3_k127_144588_1 Sugar (and other) transporter K05819,K08178 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003028 289.0
YYD3_k127_144588_2 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000159 231.0
YYD3_k127_144588_3 Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - 0.00000000000000000000000000000000000000000000000000000002244 212.0
YYD3_k127_144588_4 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000000000000000003971 192.0
YYD3_k127_144588_5 metal-dependent hydrolase with the TIM-barrel fold - - - 0.000000002502 69.0
YYD3_k127_144588_6 Bacterial Ig-like domain 2 - - - 0.0000214 55.0
YYD3_k127_1448460_0 Tannase and feruloyl esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007469 581.0
YYD3_k127_1448460_1 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005605 558.0
YYD3_k127_1448460_2 pfam nudix - - - 0.000000000000000000000000000000000000000000000000000004915 196.0
YYD3_k127_1448460_3 - - - - 0.0000000000000000000000000000000000004676 153.0
YYD3_k127_1448460_4 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000001811 97.0
YYD3_k127_1448460_5 COG0346 Lactoylglutathione lyase and related lyases - - - 0.0000000003557 68.0
YYD3_k127_1448460_6 Protein of unknown function (DUF3738) - - - 0.00001155 48.0
YYD3_k127_1448460_7 Metallo-beta-lactamase superfamily - - - 0.00006371 46.0
YYD3_k127_1452903_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147,K12573 - 3.1.13.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 537.0
YYD3_k127_1452903_1 adenylate kinase K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006385 507.0
YYD3_k127_1452903_2 - - - - 0.00000000000000000000001937 112.0
YYD3_k127_1452903_3 NHL repeat - - - 0.0000000002233 61.0
YYD3_k127_1452903_4 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.0000001051 61.0
YYD3_k127_1452903_5 - - - - 0.00003771 48.0
YYD3_k127_1474400_0 ribonuclease inhibitor activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 438.0
YYD3_k127_1474400_2 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000000004676 185.0
YYD3_k127_1483390_0 Glucose / Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006306 322.0
YYD3_k127_1483390_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000001762 204.0
YYD3_k127_1483390_2 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000001051 111.0
YYD3_k127_1483390_3 - - - - 0.0000002203 57.0
YYD3_k127_1483390_4 - - - - 0.0001479 46.0
YYD3_k127_1483390_5 - - - - 0.0003777 51.0
YYD3_k127_1484581_0 DNA polymerase LigD polymerase domain K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 412.0
YYD3_k127_1484581_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 352.0
YYD3_k127_1484581_2 Response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000567 185.0
YYD3_k127_1484868_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003776 612.0
YYD3_k127_1484868_1 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 334.0
YYD3_k127_1484868_2 - - - - 0.000001032 53.0
YYD3_k127_1492452_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 356.0
YYD3_k127_1507465_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 3.335e-247 778.0
YYD3_k127_1507465_1 WD40-like Beta Propeller Repeat - - - 1.068e-221 724.0
YYD3_k127_1507465_10 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 316.0
YYD3_k127_1507465_11 Dihydrodipicolinate reductase, N-terminus K21672 - 1.4.1.12,1.4.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 291.0
YYD3_k127_1507465_12 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008382 291.0
YYD3_k127_1507465_13 TIGRFAM TRAP transporter solute receptor, TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001229 285.0
YYD3_k127_1507465_14 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007797 278.0
YYD3_k127_1507465_15 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008828 297.0
YYD3_k127_1507465_16 Laminin G domain - - - 0.000000000000000000000000000000000000002781 166.0
YYD3_k127_1507465_17 - - - - 0.0000000000000000000000000000000002037 138.0
YYD3_k127_1507465_18 DinB superfamily - - - 0.000000000000000000000000008468 117.0
YYD3_k127_1507465_19 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin - - - 0.00000000000000000000001977 109.0
YYD3_k127_1507465_2 Gamma-glutamyltranspeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 557.0
YYD3_k127_1507465_20 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.000000000000000000002262 108.0
YYD3_k127_1507465_21 Involved in the TonB-independent uptake of proteins K03641 - - 0.0000000000002184 83.0
YYD3_k127_1507465_22 Domain of unknown function (DUF4149) - - - 0.00000000007052 70.0
YYD3_k127_1507465_23 - - - - 0.000000001235 61.0
YYD3_k127_1507465_24 - - - - 0.000000003999 68.0
YYD3_k127_1507465_25 SnoaL-like polyketide cyclase - - - 0.0000002958 60.0
YYD3_k127_1507465_26 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.0000004544 55.0
YYD3_k127_1507465_27 Protein of unknown function (DUF3738) - - - 0.00003744 48.0
YYD3_k127_1507465_28 Protein of unknown function (DUF3738) - - - 0.0008175 45.0
YYD3_k127_1507465_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 528.0
YYD3_k127_1507465_4 PFAM Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 485.0
YYD3_k127_1507465_5 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005779 466.0
YYD3_k127_1507465_6 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 432.0
YYD3_k127_1507465_7 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 380.0
YYD3_k127_1507465_8 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002354 350.0
YYD3_k127_1507465_9 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 340.0
YYD3_k127_1508372_0 serine-type endopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002848 283.0
YYD3_k127_1508372_1 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000000000003925 159.0
YYD3_k127_1508372_2 Histidine kinase - - - 0.0000000000000000000000000000001777 141.0
YYD3_k127_1508372_3 - - - - 0.0000000000000000000000000004458 116.0
YYD3_k127_1508372_4 ADP binding K08282,K13419 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.7.11.1 0.000000000000000000000003642 115.0
YYD3_k127_1508372_5 DoxX-like family - - - 0.00000000000001259 78.0
YYD3_k127_1509996_0 3-beta hydroxysteroid dehydrogenase/isomerase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 383.0
YYD3_k127_1509996_1 D-glycero-D-manno-heptose 7-phosphate metabolic process K03271,K03273 - 3.1.3.82,3.1.3.83,5.3.1.28 0.0000000000000000000000000000000000000007621 152.0
YYD3_k127_1509996_2 UDP-galactopyranose mutase - - - 0.000000000000000000000001302 111.0
YYD3_k127_1511659_0 PQQ-like domain K05889 - 1.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007329 477.0
YYD3_k127_1511659_1 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 411.0
YYD3_k127_1511659_2 L,D-transpeptidase catalytic domain K21470 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000301 273.0
YYD3_k127_1511659_3 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000004395 229.0
YYD3_k127_1511659_4 NHL repeat - - - 0.0000000000000000000000000000000000000000002124 171.0
YYD3_k127_1511659_5 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000199 159.0
YYD3_k127_1511659_6 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000002963 140.0
YYD3_k127_1532299_0 Oxidoreductase molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007748 265.0
YYD3_k127_1532299_1 BAAT / Acyl-CoA thioester hydrolase C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000001253 232.0
YYD3_k127_1532299_2 DinB family - - - 0.000000000000000000002268 100.0
YYD3_k127_1532299_3 Helix-turn-helix domain - - - 0.00003749 51.0
YYD3_k127_1542502_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 470.0
YYD3_k127_1542502_1 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003424 406.0
YYD3_k127_1542502_2 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003971 301.0
YYD3_k127_1542502_3 PFAM regulatory protein LuxR - - - 0.00000000000000000000000000000000000000000000000000000007484 204.0
YYD3_k127_1542502_4 - - - - 0.0000000000000000000000000000000000000000000004964 176.0
YYD3_k127_1542502_5 MASE1 - - - 0.000000000000000000000000000000000000002822 164.0
YYD3_k127_1542502_6 - - - - 0.000000000000000000000000000000006676 143.0
YYD3_k127_1542502_7 DNA topoisomerase K03169 - 5.99.1.2 0.000000000004216 68.0
YYD3_k127_1542502_8 ParB-like nuclease domain K03497 - - 0.000000009967 67.0
YYD3_k127_1542502_9 - - - - 0.00000008707 60.0
YYD3_k127_1549195_0 Pfam Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000435 520.0
YYD3_k127_1549195_1 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009018 329.0
YYD3_k127_1549195_2 Outer membrane protein beta-barrel family K16087,K16092 - - 0.000000000000000000000000000000000003877 158.0
YYD3_k127_1549195_3 PFAM multicopper oxidase type K08100 - 1.3.3.5 0.00000000000000000000000000000005882 146.0
YYD3_k127_1549195_4 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000005202 124.0
YYD3_k127_1551893_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 539.0
YYD3_k127_1551893_1 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001898 278.0
YYD3_k127_1552085_0 Carboxypeptidase regulatory-like domain - - - 1.37e-201 651.0
YYD3_k127_1552085_1 Peptidase M56, BlaR1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 386.0
YYD3_k127_1552085_2 - K02172 - - 0.00000000000000000000000000000000000000000000000000000000567 211.0
YYD3_k127_1552085_3 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000000000000000007698 182.0
YYD3_k127_1552085_4 - K02172 - - 0.0000000000000000000000000000000000000000000000001677 187.0
YYD3_k127_1552085_5 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000003405 154.0
YYD3_k127_1554845_0 oxidoreductase activity - - - 1.326e-194 616.0
YYD3_k127_1554845_1 conserved protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000004073 245.0
YYD3_k127_1554845_2 TraB family K09973 - - 0.0000000000000000000000000000000000000000000000763 183.0
YYD3_k127_1554845_3 Cupin domain - - - 0.0000000000000000000000002507 110.0
YYD3_k127_1554845_4 - - - - 0.0001163 49.0
YYD3_k127_1560100_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 310.0
YYD3_k127_1560100_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002968 291.0
YYD3_k127_1560100_2 Succinyl-CoA ligase like flavodoxin domain K18594 - - 0.00000004045 55.0
YYD3_k127_1561748_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009405,GO:0009605,GO:0009607,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030312,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0035821,GO:0036094,GO:0040007,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043207,GO:0043492,GO:0043952,GO:0044003,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044403,GO:0044419,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0050896,GO:0051179,GO:0051234,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052564,GO:0052572,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0075136,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 3.937e-211 677.0
YYD3_k127_1561748_1 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 583.0
YYD3_k127_1561748_10 Methyltransferase - - - 0.00000000000001909 83.0
YYD3_k127_1561748_11 - - - - 0.00000002101 59.0
YYD3_k127_1561748_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 521.0
YYD3_k127_1561748_3 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 515.0
YYD3_k127_1561748_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003829 486.0
YYD3_k127_1561748_5 c-di-gmp phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000595 282.0
YYD3_k127_1561748_6 N-acetylglucosaminylinositol deacetylase activity K22135 - - 0.000000000000000000000000000000000000000000000000000000000000000001264 233.0
YYD3_k127_1561748_7 Histidine kinase - - - 0.000000000000000000000000000000000000000000000002809 193.0
YYD3_k127_1561748_8 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000001497 164.0
YYD3_k127_1561748_9 alpha beta - - - 0.0000000000000000000000004452 122.0
YYD3_k127_1566013_0 Acetamidase/Formamidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 396.0
YYD3_k127_1566013_1 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 342.0
YYD3_k127_1566013_10 Methyltransferase type 11 - - - 0.000000000000000000000000002103 121.0
YYD3_k127_1566013_11 - - - - 0.000000000000000000000001025 113.0
YYD3_k127_1566013_12 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000004285 102.0
YYD3_k127_1566013_13 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000006189 99.0
YYD3_k127_1566013_15 Tellurite resistance protein TehB - - - 0.000000000000000002533 93.0
YYD3_k127_1566013_16 - - - - 0.00000000001045 73.0
YYD3_k127_1566013_2 Major Facilitator Superfamily K08177 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006907 342.0
YYD3_k127_1566013_3 Sulfite exporter TauE/SafE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 309.0
YYD3_k127_1566013_4 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008147 314.0
YYD3_k127_1566013_5 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002025 284.0
YYD3_k127_1566013_6 - - - - 0.00000000000000000000000000000000000000000000000000000000008779 209.0
YYD3_k127_1566013_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000001747 165.0
YYD3_k127_1566013_8 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.000000000000000000000000000000000000000001729 171.0
YYD3_k127_1566013_9 Phosphoglycerate mutase family K01834 - 5.4.2.11 0.0000000000000000000000000000000000009384 145.0
YYD3_k127_1568772_0 regulation of response to stimulus - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007167 419.0
YYD3_k127_1568772_1 Maltose acetyltransferase K00661 - 2.3.1.79 0.000000000000000000000000000000000000000000000000000000000001151 210.0
YYD3_k127_1568772_2 serine-type peptidase activity K01990,K08884,K12132,K18912 - 1.14.99.50,2.7.11.1 0.0000000000000000000000000005092 116.0
YYD3_k127_1568772_3 alpha/beta hydrolase fold - - - 0.00000000002902 73.0
YYD3_k127_1571829_0 alpha-galactosidase K07407 - 3.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 628.0
YYD3_k127_1571829_1 PQQ enzyme repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004965 273.0
YYD3_k127_1571829_2 Belongs to the universal stress protein A family - - - 0.000000000000000000000000002314 123.0
YYD3_k127_1571829_3 Universal stress protein family - - - 0.000000000000000000000009213 109.0
YYD3_k127_1571829_4 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0000000000000001653 81.0
YYD3_k127_1571829_6 Methyltransferase domain - - - 0.00001525 53.0
YYD3_k127_1571829_7 Methyltransferase domain - - - 0.0001439 52.0
YYD3_k127_1571829_8 Beta-lactamase superfamily domain - - - 0.0006341 44.0
YYD3_k127_1574302_0 PFAM Extradiol ring-cleavage dioxygenase class III protein subunit B K04099 - 1.13.11.57 5.784e-202 643.0
YYD3_k127_1574302_1 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004004 448.0
YYD3_k127_1574302_2 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 388.0
YYD3_k127_1574302_3 response to abiotic stimulus K06867 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001527 297.0
YYD3_k127_1574302_4 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000001756 226.0
YYD3_k127_1574302_5 methyltransferase - - - 0.00000000000000000000000000000000000003513 152.0
YYD3_k127_1574302_6 Universal stress protein family - - - 0.00000000000000000000000000000000872 132.0
YYD3_k127_1574302_7 - - - - 0.0004875 51.0
YYD3_k127_1580385_0 STELLO glycosyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 407.0
YYD3_k127_1580385_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 391.0
YYD3_k127_1580385_2 Glycosyl transferase, family 2 K16648 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002254 293.0
YYD3_k127_1580385_3 COG0500 SAM-dependent methyltransferases - - - 0.00000000000000000000000000000000000000000000000000001614 203.0
YYD3_k127_1589169_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 477.0
YYD3_k127_1589169_1 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 458.0
YYD3_k127_1589169_10 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000133 125.0
YYD3_k127_1589169_11 YtkA-like - - - 0.0000000000000000009793 97.0
YYD3_k127_1589169_12 Phosphate-selective porin O and P K07221 - - 0.00000000000003412 85.0
YYD3_k127_1589169_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 449.0
YYD3_k127_1589169_3 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001064 278.0
YYD3_k127_1589169_4 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006282 254.0
YYD3_k127_1589169_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000472 228.0
YYD3_k127_1589169_6 Spore coat protein CotH - - - 0.0000000000000000000000000000000000000000000000000000000281 219.0
YYD3_k127_1589169_7 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000004606 188.0
YYD3_k127_1589169_8 Tetratricopeptide repeat - - - 0.000000000000000000000000000000001513 140.0
YYD3_k127_1589169_9 - - - - 0.00000000000000000000000002901 124.0
YYD3_k127_1594610_0 ABC transporter transmembrane region K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 451.0
YYD3_k127_1594610_1 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 383.0
YYD3_k127_1597854_0 peptidase - - - 0.000000000000000000000000000000000000000000000001234 194.0
YYD3_k127_1597854_1 Spermine spermidine synthase K00797 - 2.5.1.16 0.000000000000000000000000000000008989 138.0
YYD3_k127_1615_0 4Fe-4S dicluster domain K00184 - - 0.0 1154.0
YYD3_k127_1615_1 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 5.835e-252 787.0
YYD3_k127_1615_10 PFAM cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000002352 259.0
YYD3_k127_1615_11 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000001577 238.0
YYD3_k127_1615_12 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000307 229.0
YYD3_k127_1615_13 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000005435 233.0
YYD3_k127_1615_14 Protein of unknown function (DUF3341) - - - 0.000000000000000000000000000000000000000000000000000000000000005479 221.0
YYD3_k127_1615_15 Thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000006592 194.0
YYD3_k127_1615_16 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000002416 167.0
YYD3_k127_1615_18 TIGRFAM Caa(3)-type oxidase, subunit IV K02277 - 1.9.3.1 0.00000000000000001708 88.0
YYD3_k127_1615_19 Putative regulatory protein - - - 0.000000000000004312 79.0
YYD3_k127_1615_2 Polysulphide reductase, NrfD K00185 - - 2.632e-210 662.0
YYD3_k127_1615_20 - - - - 0.000000000083 73.0
YYD3_k127_1615_3 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 491.0
YYD3_k127_1615_4 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 394.0
YYD3_k127_1615_5 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004526 372.0
YYD3_k127_1615_6 Bacterial protein of unknown function (DUF885) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005205 361.0
YYD3_k127_1615_7 PFAM Nucleotidyl transferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 344.0
YYD3_k127_1615_8 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003973 306.0
YYD3_k127_1615_9 signal sequence binding K07152 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001205 265.0
YYD3_k127_1657788_0 Transposase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 440.0
YYD3_k127_1657788_1 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000001409 180.0
YYD3_k127_1657788_2 Large-conductance mechanosensitive channel, MscL - - - 0.0000000000000000000000001401 107.0
YYD3_k127_1684325_0 glucan 1,4-alpha-glucosidase activity - - - 2.558e-267 841.0
YYD3_k127_1684325_1 short-chain alcohol - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 461.0
YYD3_k127_1684325_10 transcriptional regulator - - - 0.00000000000000000000000000000000000000002009 160.0
YYD3_k127_1684325_11 - - - - 0.00000000000000000000000000000000003577 147.0
YYD3_k127_1684325_12 Major facilitator superfamily - - - 0.000000000000000000000000000000009568 130.0
YYD3_k127_1684325_13 - K22014 - - 0.000000000001482 70.0
YYD3_k127_1684325_2 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 355.0
YYD3_k127_1684325_3 DNA methylase K00571 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 329.0
YYD3_k127_1684325_4 Gaf domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001652 285.0
YYD3_k127_1684325_5 Glyoxalase-like domain K08234 - - 0.000000000000000000000000000000000000000000000000000000000000002135 220.0
YYD3_k127_1684325_6 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000005633 209.0
YYD3_k127_1684325_7 YCII-related domain - - - 0.00000000000000000000000000000000000000000000000000005047 190.0
YYD3_k127_1684325_8 Pyridoxamine 5'-phosphate oxidase K00275 - 1.4.3.5 0.0000000000000000000000000000000000000000000000000006868 188.0
YYD3_k127_1684325_9 PFAM Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000204 175.0
YYD3_k127_1711887_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC - - - 1.78e-231 732.0
YYD3_k127_1711887_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 461.0
YYD3_k127_1711887_10 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000002815 150.0
YYD3_k127_1711887_11 - - - - 0.00000000000000000002362 105.0
YYD3_k127_1711887_12 - - - - 0.0000001274 62.0
YYD3_k127_1711887_13 Astacin (Peptidase family M12A) - - - 0.0000007324 60.0
YYD3_k127_1711887_15 Two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07712 - - 0.00002815 56.0
YYD3_k127_1711887_2 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001881 280.0
YYD3_k127_1711887_3 - - - - 0.000000000000000000000000000000000000000000000000000000000004025 215.0
YYD3_k127_1711887_4 lipoprotein transporter activity K02003 - - 0.00000000000000000000000000000000000000000000000000000000004421 221.0
YYD3_k127_1711887_5 spore germination - - - 0.00000000000000000000000000000000000000000000000000000000005323 217.0
YYD3_k127_1711887_6 Outer membrane lipoprotein-sorting protein - - - 0.00000000000000000000000000000000000000000000001102 183.0
YYD3_k127_1711887_7 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000002421 187.0
YYD3_k127_1711887_8 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons - - - 0.0000000000000000000000000000000000000000000002811 183.0
YYD3_k127_1711887_9 Haem-binding domain - - - 0.000000000000000000000000000000000000000000003829 168.0
YYD3_k127_1725028_0 FtsX-like permease family - - - 2.458e-316 1000.0
YYD3_k127_1725028_1 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 580.0
YYD3_k127_1725028_10 Metallo-beta-lactamase superfamily - - - 0.0006086 52.0
YYD3_k127_1725028_2 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000000000000000002069 175.0
YYD3_k127_1725028_3 - - - - 0.00000000000000000000000000000002804 129.0
YYD3_k127_1725028_4 - - - - 0.0000000000000000000004067 108.0
YYD3_k127_1725028_5 - - - - 0.00000000000000000002257 102.0
YYD3_k127_1725028_6 Acetyltransferase (GNAT) family - - - 0.000000000000000004823 95.0
YYD3_k127_1725028_7 - - - - 0.0000000000005186 74.0
YYD3_k127_1725028_8 - - - - 0.000000000002325 78.0
YYD3_k127_1725028_9 - - - - 0.0000000009077 66.0
YYD3_k127_1735528_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 625.0
YYD3_k127_1735528_1 Patatin-like phospholipase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 601.0
YYD3_k127_1735528_2 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004064 337.0
YYD3_k127_1735528_3 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000534 160.0
YYD3_k127_1735528_4 Protein of unknown function (DUF433) - - - 0.00000000000000000000000000000004053 128.0
YYD3_k127_1735528_5 - - - - 0.0000000000000002713 88.0
YYD3_k127_1735528_6 - - - - 0.00000000000001326 84.0
YYD3_k127_1735528_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000003813 75.0
YYD3_k127_1735528_8 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.000000048 55.0
YYD3_k127_1735528_9 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.0000007625 51.0
YYD3_k127_1737733_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 1.027e-202 637.0
YYD3_k127_1737733_1 Heat shock 70 kDa protein K04043 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 554.0
YYD3_k127_1737733_10 Transcriptional regulator - - - 0.0000000000000000000000000000000000007778 143.0
YYD3_k127_1737733_11 PFAM heat shock protein DnaJ K04082 - - 0.0000000000000000000000000000000001897 142.0
YYD3_k127_1737733_12 Periplasmic binding protein K02016 - - 0.00000000000000000000000000000004333 139.0
YYD3_k127_1737733_13 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000001634 127.0
YYD3_k127_1737733_14 FeS assembly protein IscX - - - 0.000000000000000000002608 94.0
YYD3_k127_1737733_2 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003651 356.0
YYD3_k127_1737733_3 ABC transporter substrate-binding protein K02016 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009948 333.0
YYD3_k127_1737733_4 Diphthamide synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000668 276.0
YYD3_k127_1737733_5 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.000000000000000000000000000000000000000000000000000000000000000006998 228.0
YYD3_k127_1737733_6 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000111 224.0
YYD3_k127_1737733_7 Phosphorylase superfamily - - - 0.00000000000000000000000000000000000000000000000000001434 197.0
YYD3_k127_1737733_8 PFAM UBA THIF-type NAD FAD binding K21147 - 2.7.7.80,2.8.1.11 0.000000000000000000000000000000000000000000000000009655 185.0
YYD3_k127_1737733_9 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.000000000000000000000000000000000000000000003554 168.0
YYD3_k127_1744268_0 Hypothetical methyltransferase K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 380.0
YYD3_k127_1744268_1 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000006992 151.0
YYD3_k127_1744268_2 - - - - 0.0000008334 55.0
YYD3_k127_1744686_0 Elongator protein 3, MiaB family, Radical SAM K06936 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004361 327.0
YYD3_k127_1744686_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 292.0
YYD3_k127_1744686_2 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.000000000000000000000000000000000000000000000000000003094 194.0
YYD3_k127_1744686_3 - - - - 0.0000000000005268 71.0
YYD3_k127_1749209_0 Fatty acid hydroxylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000168 271.0
YYD3_k127_1753356_0 membrane organization K07277,K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003152 546.0
YYD3_k127_1753356_1 Ion channel - - - 0.000000000000000000000000000000000000000001003 160.0
YYD3_k127_1753356_2 peptidyl-tyrosine sulfation - - - 0.0000006529 59.0
YYD3_k127_1779980_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 590.0
YYD3_k127_1779980_1 lyase activity K11645 GO:0003674,GO:0003824,GO:0004332,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016829,GO:0016830,GO:0016832,GO:0042802,GO:0044424,GO:0044444,GO:0044464 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 539.0
YYD3_k127_1779980_10 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004827 304.0
YYD3_k127_1779980_11 FES K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 299.0
YYD3_k127_1779980_12 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009341 275.0
YYD3_k127_1779980_13 Squalene/phytoene synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001076 250.0
YYD3_k127_1779980_14 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000006205 241.0
YYD3_k127_1779980_15 squalene-associated FAD-dependent desaturase K21677 - 1.17.8.1 0.000000000000000000000000000000000000000000000000000000000000000002164 243.0
YYD3_k127_1779980_16 GDP-mannose mannosyl hydrolase activity K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000024 190.0
YYD3_k127_1779980_17 phosphatidylcholine synthase K01004 - 2.7.8.24 0.0000000000000000000000000000000000000000000000000007104 193.0
YYD3_k127_1779980_18 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000000001474 195.0
YYD3_k127_1779980_19 peptide deformylase activity K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 0.0000000000000000000000000000000000000000000001685 173.0
YYD3_k127_1779980_2 Isocitrate/isopropylmalate dehydrogenase K07246 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003862,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006108,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009027,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0019752,GO:0036094,GO:0043167,GO:0043169,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046553,GO:0046872,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006529 505.0
YYD3_k127_1779980_20 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000001471 176.0
YYD3_k127_1779980_21 thiolester hydrolase activity K06889 - - 0.00000000000000000000000000000000000000087 167.0
YYD3_k127_1779980_22 Belongs to the GcvT family K06980 - - 0.0000000000000000000000000000000000005035 161.0
YYD3_k127_1779980_23 NUDIX domain K03574,K03575 - 3.6.1.55 0.000000000000000000000009899 115.0
YYD3_k127_1779980_3 succinyl-diaminopimelate desuccinylase activity K01436,K01438,K01439 - 3.5.1.16,3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002355 473.0
YYD3_k127_1779980_4 symporter activity K03307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 402.0
YYD3_k127_1779980_5 tRNA thio-modification K03151 GO:0000049,GO:0002937,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0017144,GO:0018130,GO:0019438,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0042364,GO:0042723,GO:0042724,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 400.0
YYD3_k127_1779980_6 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit K11381 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 385.0
YYD3_k127_1779980_7 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002679 331.0
YYD3_k127_1779980_8 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005277 332.0
YYD3_k127_1779980_9 PFAM peptidase S58, DmpA K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007933 329.0
YYD3_k127_1784613_0 Tetratricopeptide repeat K08884,K12132 - 2.7.11.1 1.659e-272 864.0
YYD3_k127_1784613_1 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000001819 215.0
YYD3_k127_1784613_2 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000001564 190.0
YYD3_k127_1784613_3 PIN domain - - - 0.0000000000000000000000000000000000000000001583 167.0
YYD3_k127_1784613_5 spheroidene monooxygenase K09847 - 1.14.15.9 0.0000000299 60.0
YYD3_k127_1787693_0 peptidyl-tyrosine sulfation K01277 - 3.4.14.4 1.395e-271 850.0
YYD3_k127_1787693_1 Dehydrogenase K00117,K19813 - 1.1.5.2,1.1.5.9 6.388e-213 681.0
YYD3_k127_1787693_2 Putative glutamine amidotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009437 591.0
YYD3_k127_1787693_3 Protein of unknown function (DUF1624) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006405 342.0
YYD3_k127_1787693_4 phosphatase homologous to the C-terminal domain of histone macroH2A1 - - - 0.0000000000000000000000000000000000000000000000000000002075 216.0
YYD3_k127_1787693_5 Peptidase C14 caspase catalytic subunit p20 - - - 0.000000000000000000000000000000000000000000000006103 186.0
YYD3_k127_1787693_6 NIPSNAP - - - 0.00000000000000000000000000000000000000000006812 165.0
YYD3_k127_1787693_7 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.000000000000000000000000000000000000000007294 168.0
YYD3_k127_1787693_8 YCII-related domain K09780 - - 0.000000000000000000000000000000000006095 139.0
YYD3_k127_1787693_9 Protein of unknown function (DUF1761) - - - 0.00000000000000000000000000000003901 130.0
YYD3_k127_1793099_0 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 6.586e-213 672.0
YYD3_k127_1793099_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 577.0
YYD3_k127_1793099_10 Belongs to the ABC transporter superfamily K02031,K02032,K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003712 313.0
YYD3_k127_1793099_11 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000579 290.0
YYD3_k127_1793099_12 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000004386 235.0
YYD3_k127_1793099_13 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.0000000000000000000000005558 106.0
YYD3_k127_1793099_14 Carboxypeptidase regulatory-like domain - - - 0.00004202 57.0
YYD3_k127_1793099_15 Peptidase M56 - - - 0.00005108 51.0
YYD3_k127_1793099_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 535.0
YYD3_k127_1793099_3 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 518.0
YYD3_k127_1793099_4 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000953 495.0
YYD3_k127_1793099_5 response regulator, receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004935 454.0
YYD3_k127_1793099_6 Phosphoglycerate mutase family K01834 - 5.4.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008572 383.0
YYD3_k127_1793099_7 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 387.0
YYD3_k127_1793099_8 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 335.0
YYD3_k127_1793099_9 Belongs to the ABC transporter superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 333.0
YYD3_k127_1804865_0 peptidase S9B dipeptidylpeptidase IV domain protein K01278 - 3.4.14.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 470.0
YYD3_k127_1804865_1 Short-chain dehydrogenase reductase SDR K03793 - 1.5.1.33 0.0000000000000000000006605 99.0
YYD3_k127_1812648_0 electron transfer activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008938 409.0
YYD3_k127_1812648_1 TIR domain - - - 0.00000000000000000000000000000000000002125 162.0
YYD3_k127_1812648_2 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 - 5.2.1.8 0.0000000000000000000000000008549 114.0
YYD3_k127_1817256_0 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 593.0
YYD3_k127_1817256_1 PFAM sigma-70 region 2 domain protein K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 533.0
YYD3_k127_1817256_10 PFAM von Willebrand factor type A K07114,K12511 - - 0.000000000000000000000000000000000000000000000000000000000000000004229 237.0
YYD3_k127_1817256_11 COG0346 Lactoylglutathione lyase and related lyases K07032 - - 0.0000000000000000000000000000000000000000000000003157 180.0
YYD3_k127_1817256_12 - - - - 0.000000000000000000000000000000000000000000000003215 188.0
YYD3_k127_1817256_13 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000189 172.0
YYD3_k127_1817256_14 - - - - 0.00000000000000000000000000000000000000000000005106 175.0
YYD3_k127_1817256_15 - - - - 0.000000000000000000000000000000000000000000001107 184.0
YYD3_k127_1817256_16 Two component signalling adaptor domain K03408 - - 0.0000000000000000000000000000000000000000006042 167.0
YYD3_k127_1817256_17 SMART phosphoesterase PHP domain protein - - - 0.000000000000000000000000000000000000000001371 179.0
YYD3_k127_1817256_18 - - - - 0.00000000000000000000000000000000000000001206 157.0
YYD3_k127_1817256_19 phosphorelay signal transduction system K03413 - - 0.0000000000000000000000000000000000000009621 151.0
YYD3_k127_1817256_2 DNA ligase K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005603 371.0
YYD3_k127_1817256_20 Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma- L-glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine - - - 0.000000000000000000000000000000001635 138.0
YYD3_k127_1817256_21 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.00000000000000000000000000000001786 140.0
YYD3_k127_1817256_22 - - - - 0.000000000000000000000000000002458 123.0
YYD3_k127_1817256_23 - - - - 0.00000000000000003107 93.0
YYD3_k127_1817256_24 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000007727 90.0
YYD3_k127_1817256_3 protein kinase activity K01972,K02342,K04096 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 2.7.7.7,6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002865 351.0
YYD3_k127_1817256_4 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 333.0
YYD3_k127_1817256_5 Belongs to the MIP aquaporin (TC 1.A.8) family K02440 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 314.0
YYD3_k127_1817256_6 electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 314.0
YYD3_k127_1817256_7 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001287 282.0
YYD3_k127_1817256_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005651 283.0
YYD3_k127_1817256_9 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000339 271.0
YYD3_k127_1818358_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 491.0
YYD3_k127_1818358_1 ATP phosphoribosyltransferase K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004416 398.0
YYD3_k127_1818358_10 Domain of Unknown Function (DUF1080) - - - 0.0000000000008959 76.0
YYD3_k127_1818358_11 helix_turn_helix, mercury resistance - - - 0.000000000005922 72.0
YYD3_k127_1818358_12 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.000007733 55.0
YYD3_k127_1818358_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008514 319.0
YYD3_k127_1818358_3 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003228 302.0
YYD3_k127_1818358_4 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005863 276.0
YYD3_k127_1818358_5 FAD dependent oxidoreductase K03153 - 1.4.3.19 0.00000000000000000000000000000000000000000000000000000000000004635 229.0
YYD3_k127_1818358_6 translation initiation inhibitor, yjgF family K04782 - 4.2.99.21 0.0000000000000000000000000000000000000000000000000001362 188.0
YYD3_k127_1818358_7 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K11755 - 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000003223 139.0
YYD3_k127_1818358_8 Periplasmic or secreted lipoprotein - - - 0.000000000000000000000002793 113.0
YYD3_k127_1818358_9 Polymer-forming cytoskeletal - - - 0.00000000000000000000005974 103.0
YYD3_k127_1844036_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004447 394.0
YYD3_k127_1844036_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009962 314.0
YYD3_k127_1844036_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006772 267.0
YYD3_k127_1844036_3 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.000000000000000000000000000000000000000000000000000008608 205.0
YYD3_k127_1844036_4 Involved in the binding of tRNA to the ribosomes K02946 - - 0.0000000000000000000000000000000000000000000000000001737 187.0
YYD3_k127_1844036_5 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.0000000000000000000000000000000000000006069 152.0
YYD3_k127_1844036_6 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000004204 109.0
YYD3_k127_1844036_7 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000002057 106.0
YYD3_k127_1844036_8 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000002319 87.0
YYD3_k127_1865892_0 COGs COG2133 Glucose sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001586 294.0
YYD3_k127_1865892_1 Protein of unknown function (DUF938) - - - 0.0000000000000000000000000000000000000000000000000000000008913 210.0
YYD3_k127_1865892_2 Haem-binding domain - - - 0.0000000000000000008157 98.0
YYD3_k127_1865892_3 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000001603 84.0
YYD3_k127_1865892_4 Cytochrome c - - - 0.0000000000009915 75.0
YYD3_k127_1865892_5 Cysteine-rich CPXCG - - - 0.00000001502 58.0
YYD3_k127_1870523_0 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 518.0
YYD3_k127_1870523_1 protein kinase related protein - - - 0.000000006463 58.0
YYD3_k127_1893659_0 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 483.0
YYD3_k127_1893659_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003562 391.0
YYD3_k127_1893659_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005057 346.0
YYD3_k127_1893659_3 Mur ligase middle domain K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000001577 273.0
YYD3_k127_1893659_4 Deoxynucleoside kinase K15518 - 2.7.1.113 0.00000000000000000000000000000000000000000000000000000000000000001781 230.0
YYD3_k127_1893659_5 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000002031 231.0
YYD3_k127_1893659_6 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744,K09774,K22110 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0006810,GO:0008150,GO:0008643,GO:0008645,GO:0009279,GO:0015267,GO:0015288,GO:0015749,GO:0015750,GO:0015751,GO:0015757,GO:0016020,GO:0019867,GO:0022803,GO:0022829,GO:0022857,GO:0030312,GO:0030313,GO:0031975,GO:0034219,GO:0044462,GO:0044464,GO:0046323,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:1904659 - 0.000000000000000000000000000000000000000000000000000001298 218.0
YYD3_k127_1973915_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000909 432.0
YYD3_k127_1973915_1 Short-chain Dehydrogenase reductase - - - 0.00000000000000000000000000000000000000000000000000000000000001356 224.0
YYD3_k127_1973915_2 feruloyl esterase activity K09252 GO:0000272,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010383,GO:0010393,GO:0010410,GO:0016052,GO:0016787,GO:0016788,GO:0016998,GO:0017144,GO:0030600,GO:0042737,GO:0042802,GO:0042803,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0045488,GO:0045490,GO:0045491,GO:0045493,GO:0046983,GO:0052689,GO:0071554,GO:0071704,GO:1901575 3.1.1.73 0.00000000000000000000006374 104.0
YYD3_k127_1979912_0 Dehydrogenase K00117 - 1.1.5.2 5.575e-274 864.0
YYD3_k127_1979912_1 peroxiredoxin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 357.0
YYD3_k127_1979912_2 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000004737 178.0
YYD3_k127_1979912_3 Cytochrome c - - - 0.00000000000000000000000000000000000003575 151.0
YYD3_k127_1980066_0 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 292.0
YYD3_k127_1980066_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000001754 178.0
YYD3_k127_1980066_2 pfam nudix - - - 0.000000000000000000000000000001464 134.0
YYD3_k127_1980066_3 amidohydrolase - - - 0.00000000000000000000004592 114.0
YYD3_k127_1983765_0 ATPase associated with various cellular activities, AAA_5 K09882 - 6.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 481.0
YYD3_k127_1983765_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 346.0
YYD3_k127_1983765_2 TipAS antibiotic-recognition domain - - - 0.000000001245 69.0
YYD3_k127_1987139_0 regulation of DNA-templated transcription, elongation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 512.0
YYD3_k127_1987139_1 mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 387.0
YYD3_k127_1987139_2 Mechanosensitive ion channel K16052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000904 322.0
YYD3_k127_1987139_3 Glycogen debranching enzyme - - - 0.0000000000000000962 80.0
YYD3_k127_1987139_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000004059 76.0
YYD3_k127_2013501_0 helicase K03724 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 - 2.598e-304 952.0
YYD3_k127_2013501_1 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007558 573.0
YYD3_k127_2013501_10 B12 binding domain - - - 0.0000000000000001153 81.0
YYD3_k127_2013501_11 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000001717 88.0
YYD3_k127_2013501_12 - - - - 0.000000000002869 72.0
YYD3_k127_2013501_13 - - - - 0.00007821 51.0
YYD3_k127_2013501_14 Surface antigen - - - 0.0001563 52.0
YYD3_k127_2013501_2 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009214 515.0
YYD3_k127_2013501_3 FtsX-like permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 407.0
YYD3_k127_2013501_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000023 248.0
YYD3_k127_2013501_5 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000001412 203.0
YYD3_k127_2013501_6 Glycine cleavage system regulatory protein - - - 0.0000000000000000000000000000000000000000000002409 172.0
YYD3_k127_2013501_7 - - - - 0.000000000000000000000000000000000000000000531 171.0
YYD3_k127_2013501_8 Polysaccharide deacetylase K22278 - 3.5.1.104 0.00000000000000000000000000003227 126.0
YYD3_k127_2013501_9 - - - - 0.0000000000000000000000000003436 124.0
YYD3_k127_2021143_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 347.0
YYD3_k127_2021143_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000001067 178.0
YYD3_k127_2022849_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 8.185e-199 642.0
YYD3_k127_2022849_1 Aminotransferase class-III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006642 561.0
YYD3_k127_2022849_11 Cupin 2, conserved barrel domain protein - - - 0.00005386 55.0
YYD3_k127_2022849_12 imidazolonepropionase activity - - - 0.0001344 46.0
YYD3_k127_2022849_2 metal-dependent hydrolase with the TIM-barrel fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002588 257.0
YYD3_k127_2022849_3 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004513 262.0
YYD3_k127_2022849_4 NHL repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002171 253.0
YYD3_k127_2022849_5 bacterial-type flagellum-dependent cell motility - - - 0.000000000000000000000000000000000000000000000003529 196.0
YYD3_k127_2022849_6 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000002503 167.0
YYD3_k127_2022849_7 - - - - 0.00000000000000000000000000000000000000000001145 180.0
YYD3_k127_2022849_8 - - - - 0.0000000000000000000000000000000000000001187 163.0
YYD3_k127_2043186_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 4.583e-247 786.0
YYD3_k127_2043186_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009925 405.0
YYD3_k127_2043186_10 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K21310 - 2.1.1.334 0.00000000000000008123 91.0
YYD3_k127_2043186_2 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008808 342.0
YYD3_k127_2043186_3 PFAM Rhomboid family K07059 - - 0.00000000000000000000000000000000000000000000000000000000000000005197 229.0
YYD3_k127_2043186_4 Glycosyl transferase family 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000009706 235.0
YYD3_k127_2043186_5 Peptidase M56, BlaR1 - - - 0.000000000000000000000000000000000000000000000000000000000002944 237.0
YYD3_k127_2043186_6 PFAM Penicillinase repressor - - - 0.000000000000000000000000000000000000007992 147.0
YYD3_k127_2043186_7 TIGRFAM geranylgeranyl reductase K21401 - 1.3.99.38 0.00000000000000000000000000000000001282 150.0
YYD3_k127_2043186_8 Isoprenylcysteine carboxyl methyltransferase K16168 - - 0.000000000000000000000004608 111.0
YYD3_k127_2043186_9 - - - - 0.0000000000000000005438 91.0
YYD3_k127_2079174_0 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 513.0
YYD3_k127_2079174_1 receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 457.0
YYD3_k127_2079174_3 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000444 130.0
YYD3_k127_2079174_4 DNA-templated transcription, initiation K02405 - - 0.00000000000000000000000000001132 120.0
YYD3_k127_2094644_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006583 504.0
YYD3_k127_2094644_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 484.0
YYD3_k127_2094644_3 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000235 443.0
YYD3_k127_2094644_4 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001411 305.0
YYD3_k127_2094644_5 phosphoprotein phosphatase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000003336 236.0
YYD3_k127_2094644_6 phosphoprotein phosphatase activity K14680 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000001242 213.0
YYD3_k127_2094644_7 DNA-templated transcription, initiation - - - 0.00000000000000000000000001325 115.0
YYD3_k127_2094644_8 TLC ATP/ADP transporter K03301 - - 0.0000000000000000000005559 112.0
YYD3_k127_2094644_9 PBS lyase HEAT-like repeat - - - 0.000000000000000002776 100.0
YYD3_k127_2102920_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 420.0
YYD3_k127_2102920_1 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 416.0
YYD3_k127_2154075_0 - - - - 0.00000000000000000000000000000000000000001297 161.0
YYD3_k127_2154075_1 - - - - 0.0000000000000000000000000000000000004028 155.0
YYD3_k127_2154075_2 Protein of unknown function (DUF998) - - - 0.0000000000000000000000000000001709 138.0
YYD3_k127_2168513_0 Sodium:solute symporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005414 604.0
YYD3_k127_2184395_0 Domain of Unknown Function (DUF1080) - - - 0.0 1477.0
YYD3_k127_2184395_1 lysine biosynthetic process via aminoadipic acid - - - 4.477e-260 826.0
YYD3_k127_2184395_2 phosphinothricin N-acetyltransferase activity K03823,K06718 - 2.3.1.178,2.3.1.183 0.00000000000000000000000000000000008864 134.0
YYD3_k127_2184395_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000001297 117.0
YYD3_k127_218532_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000465 356.0
YYD3_k127_218532_1 transposition, DNA-mediated - - - 0.000000000000000000000000000000000000000000000000000000002691 205.0
YYD3_k127_218532_2 - - - - 0.00000000000000000000000000000004445 141.0
YYD3_k127_218532_3 NHL repeat - - - 0.00000000000002008 79.0
YYD3_k127_2192496_0 Belongs to the aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 2.672e-225 707.0
YYD3_k127_2192496_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 325.0
YYD3_k127_2192496_10 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.00000000007836 68.0
YYD3_k127_2192496_11 Carboxypeptidase regulatory-like domain - - - 0.0000000008566 63.0
YYD3_k127_2192496_12 Belongs to the peptidase S8 family - - - 0.000007799 57.0
YYD3_k127_2192496_13 Putative diguanylate phosphodiesterase - - - 0.0001409 52.0
YYD3_k127_2192496_2 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 321.0
YYD3_k127_2192496_3 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004259 284.0
YYD3_k127_2192496_4 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000002713 237.0
YYD3_k127_2192496_5 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000001699 214.0
YYD3_k127_2192496_6 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000005788 188.0
YYD3_k127_2192496_7 NUDIX domain - - - 0.00000000000000000000000000000000000006976 147.0
YYD3_k127_2192496_8 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000166 125.0
YYD3_k127_2192496_9 - K01992,K19341 - - 0.00000000000000000000000001419 119.0
YYD3_k127_2192721_0 Malate synthase K01638 - 2.3.3.9 2.523e-299 939.0
YYD3_k127_2192721_1 Pyrrolo-quinoline quinone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007599 513.0
YYD3_k127_2192721_2 cAMP biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007998 336.0
YYD3_k127_2192721_3 YCII-related domain - - - 0.00000000000000000000000000000000000000000000000000000002599 199.0
YYD3_k127_2192721_4 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000009271 212.0
YYD3_k127_2192721_5 oxidation-reduction process - - - 0.000000000000000000000000000000000000000000000001921 176.0
YYD3_k127_2192721_6 - - - - 0.0000000000000000000000004997 113.0
YYD3_k127_2192721_7 RDD family - - - 0.0000000642 61.0
YYD3_k127_2192721_8 Protein kinase domain K12132 - 2.7.11.1 0.0004308 46.0
YYD3_k127_2195864_0 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000001152 191.0
YYD3_k127_2195864_1 symbiont process K00612 - - 0.00001567 53.0
YYD3_k127_2244994_0 Carbohydrate family 9 binding domain-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005774 622.0
YYD3_k127_2244994_1 Peptidase, M16 K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007927 547.0
YYD3_k127_2244994_2 Peptidase, M16 K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004254 416.0
YYD3_k127_2244994_3 PFAM Asparaginase K01424 - 3.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000001721 231.0
YYD3_k127_2244994_4 methyltransferase activity K02169 - 2.1.1.197 0.00000000000000000000000000000000000000000000000000000000583 206.0
YYD3_k127_2244994_5 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 0.00000000000000000000000000004536 123.0
YYD3_k127_2244994_6 DinB family - - - 0.000000000000000000000000004941 116.0
YYD3_k127_2244994_7 positive regulation of growth rate - - - 0.0002075 48.0
YYD3_k127_2253419_0 von Willebrand factor, type A K07114 - - 2.837e-220 702.0
YYD3_k127_2253419_1 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001094 282.0
YYD3_k127_2253419_2 - - - - 0.00000000000000009528 90.0
YYD3_k127_2253419_3 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0007497 46.0
YYD3_k127_2254940_0 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 510.0
YYD3_k127_2254940_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 415.0
YYD3_k127_2254940_10 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000001584 188.0
YYD3_k127_2254940_11 Nodulation protein S (NodS) - - - 0.00000000000000000000000000000000000000002309 169.0
YYD3_k127_2254940_12 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000000001382 148.0
YYD3_k127_2254940_13 Ricin-type beta-trefoil - - - 0.0000000000000000000000000000000002168 141.0
YYD3_k127_2254940_14 Chain length determinant protein - - - 0.000000000000000000000000000000009613 144.0
YYD3_k127_2254940_15 response regulator, receiver - - - 0.00000000000000000000000000004531 126.0
YYD3_k127_2254940_16 Polysaccharide deacetylase - - - 0.000000000000000000002848 105.0
YYD3_k127_2254940_17 glycoside hydrolase, family - - - 0.00000000000000001035 93.0
YYD3_k127_2254940_18 Capsular exopolysaccharide family K16554 - - 0.00000000005559 73.0
YYD3_k127_2254940_19 Glycosyl hydrolases family 16 - - - 0.000001283 56.0
YYD3_k127_2254940_2 Glycosyl transferase WecB/TagA/CpsF family K05946 - 2.4.1.187 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007207 368.0
YYD3_k127_2254940_20 Pectate lyase superfamily protein - - - 0.00007541 53.0
YYD3_k127_2254940_21 PKD domain - - - 0.0004082 44.0
YYD3_k127_2254940_3 alginic acid biosynthetic process K01795 - 5.1.3.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 351.0
YYD3_k127_2254940_4 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 350.0
YYD3_k127_2254940_5 oxidoreductase activity, acting on CH-OH group of donors - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006341 323.0
YYD3_k127_2254940_6 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001707 297.0
YYD3_k127_2254940_7 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000238 256.0
YYD3_k127_2254940_8 - - - - 0.000000000000000000000000000000000000000000000000000000009219 211.0
YYD3_k127_2254940_9 polysaccharide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000293 216.0
YYD3_k127_2259145_0 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005711 385.0
YYD3_k127_2259145_1 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000006713 210.0
YYD3_k127_2259145_3 ECF sigma factor - - - 0.00002373 52.0
YYD3_k127_2269068_0 Phosphate acyltransferases K01897 - 6.2.1.3 5.616e-218 705.0
YYD3_k127_2269068_1 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005544 475.0
YYD3_k127_2269068_2 DEAD-like helicases superfamily K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 372.0
YYD3_k127_2269068_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004861 337.0
YYD3_k127_2269068_4 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000012 247.0
YYD3_k127_2269068_5 NmrA-like family - - - 0.000000000000000000000000000000000000000000000000002661 195.0
YYD3_k127_2269068_6 - - - - 0.000000000000000000000000000000001587 141.0
YYD3_k127_2269068_7 Tetratricopeptide repeat - - - 0.0000000000000000000000000002645 124.0
YYD3_k127_2269068_8 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000005474 92.0
YYD3_k127_2312039_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 8.41e-223 719.0
YYD3_k127_2312039_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 5.734e-209 679.0
YYD3_k127_2312039_2 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000001842 253.0
YYD3_k127_2312039_3 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000002554 60.0
YYD3_k127_2312039_4 ThiS family K03636 - - 0.0000005819 55.0
YYD3_k127_2312039_5 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0004809 47.0
YYD3_k127_2313301_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003176 254.0
YYD3_k127_2313301_1 - - - - 0.000000000000000000000000000000000000002239 159.0
YYD3_k127_2313301_2 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.000000000000000000000000000000000004325 159.0
YYD3_k127_231654_0 response regulator - - - 3.748e-194 614.0
YYD3_k127_231654_1 PFAM Polysulphide reductase, NrfD - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 438.0
YYD3_k127_231654_2 4Fe-4S dicluster domain - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 345.0
YYD3_k127_231654_3 Peptidase family M54 K06974 - - 0.00000000000000000000000000000007685 133.0
YYD3_k127_231654_5 deoxyhypusine monooxygenase activity - - - 0.00007461 51.0
YYD3_k127_2316670_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006112 587.0
YYD3_k127_2316670_1 von Willebrand factor (vWF) type A domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 509.0
YYD3_k127_2316670_10 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.00000000000000000000000000000000006576 141.0
YYD3_k127_2316670_11 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000454 143.0
YYD3_k127_2316670_12 RmlD substrate binding domain - - - 0.0000000000000000000000000000002402 136.0
YYD3_k127_2316670_14 - - - - 0.00000000000000003717 93.0
YYD3_k127_2316670_15 Methyltransferase domain - - - 0.000000001094 70.0
YYD3_k127_2316670_16 DNA-templated transcription, initiation - - - 0.000000001938 59.0
YYD3_k127_2316670_17 collagen metabolic process K08677 - - 0.000000008362 69.0
YYD3_k127_2316670_18 Fibronectin type III-like domain K05349 - 3.2.1.21 0.0000001756 64.0
YYD3_k127_2316670_2 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 485.0
YYD3_k127_2316670_3 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012,K00066 - 1.1.1.132,1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006061 473.0
YYD3_k127_2316670_4 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 392.0
YYD3_k127_2316670_5 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005927 295.0
YYD3_k127_2316670_6 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006201 293.0
YYD3_k127_2316670_7 transferase hexapeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000003254 236.0
YYD3_k127_2316670_8 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000001317 210.0
YYD3_k127_2316670_9 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000001 209.0
YYD3_k127_2335660_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005786 384.0
YYD3_k127_2335660_1 Putative FMN-binding domain K07734 - - 0.00000000000000000000000000000000000000000000000000000000000000000000172 244.0
YYD3_k127_2335660_2 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000001096 147.0
YYD3_k127_2338475_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 6.786e-248 784.0
YYD3_k127_2338475_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005025 547.0
YYD3_k127_2338475_2 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000003835 82.0
YYD3_k127_2338475_3 Tetratricopeptide TPR_2 repeat protein K12600 - - 0.0000001536 63.0
YYD3_k127_2339492_0 ABC transporter K03701 - - 0.0 1119.0
YYD3_k127_2339492_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 6.893e-249 797.0
YYD3_k127_2339492_10 response regulator K02481,K07713 - - 0.000000000000000000000000000000000000000000000000000003148 197.0
YYD3_k127_2339492_11 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000000003757 166.0
YYD3_k127_2339492_12 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000003774 152.0
YYD3_k127_2339492_13 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000002936 126.0
YYD3_k127_2339492_14 thymidylate kinase K00943 GO:0003674,GO:0003824,GO:0004550,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006165,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0000000000000000000000000000005453 129.0
YYD3_k127_2339492_15 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000006166 132.0
YYD3_k127_2339492_16 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000001452 117.0
YYD3_k127_2339492_18 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.000000000000000005371 88.0
YYD3_k127_2339492_19 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.0000000001122 70.0
YYD3_k127_2339492_2 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 450.0
YYD3_k127_2339492_20 - - - - 0.000001168 59.0
YYD3_k127_2339492_3 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 387.0
YYD3_k127_2339492_4 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 371.0
YYD3_k127_2339492_5 Carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 370.0
YYD3_k127_2339492_6 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0008654,GO:0008759,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019637,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0046467,GO:0046493,GO:0046872,GO:0046914,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006337 287.0
YYD3_k127_2339492_7 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005715 280.0
YYD3_k127_2339492_8 Protein of unknown function (DUF418) K07148 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001743 262.0
YYD3_k127_2339492_9 DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000647 248.0
YYD3_k127_2351058_0 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 2.741e-265 832.0
YYD3_k127_2351058_1 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 433.0
YYD3_k127_2351058_10 PIN domain - - - 0.00000004649 61.0
YYD3_k127_2351058_11 - - - - 0.00003312 56.0
YYD3_k127_2351058_2 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005228 418.0
YYD3_k127_2351058_3 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 395.0
YYD3_k127_2351058_4 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007968 347.0
YYD3_k127_2351058_5 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 297.0
YYD3_k127_2351058_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002251 278.0
YYD3_k127_2351058_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000003163 229.0
YYD3_k127_2351058_8 Prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000000002454 169.0
YYD3_k127_2351058_9 May be involved in cell division - - - 0.000000000000000000000000000000000000001036 157.0
YYD3_k127_235769_0 COG0520 Selenocysteine lyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006973 430.0
YYD3_k127_235769_1 TIGRFAM 40-residue YVTN family beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001504 261.0
YYD3_k127_235769_2 tryptophan 2,3-dioxygenase activity K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.000000000000000000000000000000846 122.0
YYD3_k127_235769_3 23S rRNA-intervening sequence protein - - - 0.00000000000000000000007129 104.0
YYD3_k127_235769_4 Cytochrome c - - - 0.00000003584 60.0
YYD3_k127_2373825_0 response regulator - - - 0.000000000000002595 83.0
YYD3_k127_2373825_1 Sigma-54 interaction domain K02481,K07714 - - 0.00000007353 64.0
YYD3_k127_2373825_2 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.00002315 47.0
YYD3_k127_2374944_0 gluconolactonase activity K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 432.0
YYD3_k127_2374944_1 Carboxylesterase family - - - 0.0000000000000000000000000000000000000000000109 175.0
YYD3_k127_2374944_2 - - - - 0.00000000000000000000000000004831 130.0
YYD3_k127_2381528_0 G-rich domain on putative tyrosine kinase - - - 0.000000000000000000000000000000000000000000000000005086 192.0
YYD3_k127_2381528_1 Uncharacterised nucleotidyltransferase - - - 0.000000000000000000000000000000000002472 149.0
YYD3_k127_2384789_0 Elongation factor G, domain IV K02355 - - 7.157e-222 709.0
YYD3_k127_2384789_1 Ammonium Transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008297 565.0
YYD3_k127_2384789_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008379 458.0
YYD3_k127_2384789_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 340.0
YYD3_k127_2384789_4 Ribosomal protein L17 K02879 - - 0.000000000000000000000000000000000007223 143.0
YYD3_k127_2384789_5 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000001328 140.0
YYD3_k127_2384789_6 - - - - 0.000000000000000051 91.0
YYD3_k127_2384789_7 - - - - 0.0001027 53.0
YYD3_k127_2409569_0 Molecular chaperone. Has ATPase activity K04079 - - 4.578e-301 934.0
YYD3_k127_2409569_1 Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) K17763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 430.0
YYD3_k127_2409569_10 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000000002286 183.0
YYD3_k127_2409569_11 Histidine kinase-like ATPases K17752 - 2.7.11.1 0.0000000000000000000000000000000000000000000001914 173.0
YYD3_k127_2409569_12 PFAM SMP-30 Gluconolaconase LRE-like region K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000002812 181.0
YYD3_k127_2409569_13 Stage II sporulation protein E K05518 - 3.1.3.3 0.00000000000000000000000000000000000000000002517 168.0
YYD3_k127_2409569_14 PFAM Sulfate transporter antisigma-factor antagonist STAS K17762 - - 0.00000000000000000000000000000000000000000002835 165.0
YYD3_k127_2409569_15 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000762 178.0
YYD3_k127_2409569_16 Phosphatidylethanolamine-binding protein - - - 0.000000000000000000000000000000000003186 146.0
YYD3_k127_2409569_17 - K02172 - - 0.000000000000000000000000000000000005221 148.0
YYD3_k127_2409569_18 protein histidine kinase activity - - - 0.00000000000000000000000000000000004951 145.0
YYD3_k127_2409569_2 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006633 389.0
YYD3_k127_2409569_20 - - - - 0.00000000000000000000000004588 117.0
YYD3_k127_2409569_21 - - - - 0.0000000000000000000006351 106.0
YYD3_k127_2409569_22 Phospholipid methyltransferase - - - 0.000000000000000000001657 100.0
YYD3_k127_2409569_24 Glyoxalase-like domain - - - 0.00000009635 63.0
YYD3_k127_2409569_25 - - - - 0.0000005956 57.0
YYD3_k127_2409569_26 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.0000009381 53.0
YYD3_k127_2409569_27 DinB family - - - 0.00000837 55.0
YYD3_k127_2409569_3 Glucose / Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 316.0
YYD3_k127_2409569_4 methyltransferase K03149,K15256 GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0042221,GO:0050896,GO:0051716,GO:0070887,GO:0071241,GO:0071248,GO:0071281 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 292.0
YYD3_k127_2409569_5 Predicted membrane protein (DUF2157) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 294.0
YYD3_k127_2409569_6 PFAM SMP-30 Gluconolaconase - - - 0.000000000000000000000000000000000000000000000000000000000001144 222.0
YYD3_k127_2409569_7 Two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.00000000000000000000000000000000000000000000000000000000008887 216.0
YYD3_k127_2409569_8 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000006322 196.0
YYD3_k127_2409569_9 Conserved hypothetical protein (DUF2461) - - - 0.00000000000000000000000000000000000000000000000001037 187.0
YYD3_k127_2426348_0 Trehalose utilisation - - - 0.00000000000000000000000000000000000000000000000000000000000000005955 235.0
YYD3_k127_2426348_2 Putative inner membrane exporter, YdcZ K09936 - - 0.00000000000000000000000005042 116.0
YYD3_k127_2426348_3 - - - - 0.0000000000000000000000007207 108.0
YYD3_k127_2491770_0 PFAM peptidase M24 K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000005041 224.0
YYD3_k127_2491770_1 oxidoreductase activity - - - 0.00000000000000000000000000000000000000001423 172.0
YYD3_k127_2496970_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 3.036e-305 949.0
YYD3_k127_2496970_1 sulphate transporter - - - 4.807e-216 685.0
YYD3_k127_2496970_2 Glucose-6-phosphate dehydrogenase, NAD binding domain K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000629 586.0
YYD3_k127_2496970_3 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006524 607.0
YYD3_k127_2511304_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005736 381.0
YYD3_k127_2511304_1 O-methyltransferase - - - 0.000000000000888 70.0
YYD3_k127_2511304_2 Right handed beta helix region - - - 0.00000000008532 73.0
YYD3_k127_2511304_3 Cupin 2, conserved barrel domain protein - - - 0.0003402 51.0
YYD3_k127_2539942_0 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000002417 183.0
YYD3_k127_2539942_1 CAAX protease self-immunity K07052 - - 0.0000000000000000000000005395 112.0
YYD3_k127_2553409_0 PQQ-like domain K00117 - 1.1.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 417.0
YYD3_k127_2553409_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009956 327.0
YYD3_k127_2553409_2 - - - - 0.0000000000000000003253 94.0
YYD3_k127_2553409_3 MacB-like periplasmic core domain - - - 0.000002702 50.0
YYD3_k127_2590454_0 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004538 450.0
YYD3_k127_2597053_0 Spore Coat Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000002925 229.0
YYD3_k127_2597053_1 ECF sigma factor K03088 - - 0.000000000000000000000000000000000008423 143.0
YYD3_k127_2597134_0 Spermine/spermidine synthase domain - - - 5.977e-261 827.0
YYD3_k127_2597134_1 amine dehydrogenase activity K17285 - - 4.079e-239 745.0
YYD3_k127_2597134_10 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000877 265.0
YYD3_k127_2597134_11 glycerophosphodiester phosphodiesterase activity K01126 GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008081,GO:0008889,GO:0009279,GO:0016020,GO:0016787,GO:0016788,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0042578,GO:0042597,GO:0043167,GO:0043169,GO:0044462,GO:0044464,GO:0046872,GO:0071944 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000000003601 251.0
YYD3_k127_2597134_12 response regulator K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000007846 234.0
YYD3_k127_2597134_13 - - - - 0.00000000000000000000000000000000000000000000000000000000001358 213.0
YYD3_k127_2597134_14 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K03741 - 1.20.4.1 0.00000000000000000000000000000000000000000000000000000006399 198.0
YYD3_k127_2597134_15 PFAM response regulator receiver K02483,K07658,K07668 - - 0.000000000000000000000000000000000000000000000000000005656 199.0
YYD3_k127_2597134_16 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000000001186 190.0
YYD3_k127_2597134_17 Diacylglycerol kinase catalytic domain - - - 0.00000000000000000000000000000000000000000000000002254 190.0
YYD3_k127_2597134_18 TIGRFAM phosphohistidine phosphatase SixA K08296 - - 0.0000000000000000000000000003049 119.0
YYD3_k127_2597134_19 Belongs to the acetyltransferase family. ArgA subfamily K00619 - 2.3.1.1 0.0000000000000000000000000005258 118.0
YYD3_k127_2597134_2 Outer membrane protein beta-barrel family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 479.0
YYD3_k127_2597134_20 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000001061 124.0
YYD3_k127_2597134_21 Cold shock protein domain - - - 0.00000000000000000003645 91.0
YYD3_k127_2597134_22 PFAM phosphoesterase, PA-phosphatase related - - - 0.00000000000000003325 91.0
YYD3_k127_2597134_24 - - - - 0.00000000000002281 79.0
YYD3_k127_2597134_25 Surface antigen - - - 0.00000000009709 74.0
YYD3_k127_2597134_26 CHAD domain - - - 0.000000001572 68.0
YYD3_k127_2597134_27 Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - 0.00000001114 68.0
YYD3_k127_2597134_3 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 424.0
YYD3_k127_2597134_4 PFAM phosphate transporter K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 387.0
YYD3_k127_2597134_5 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004938 380.0
YYD3_k127_2597134_6 histidine kinase HAMP region domain protein K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 345.0
YYD3_k127_2597134_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005391 285.0
YYD3_k127_2597134_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003197 275.0
YYD3_k127_2597134_9 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000792 246.0
YYD3_k127_2625960_0 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 601.0
YYD3_k127_2625960_1 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006235 453.0
YYD3_k127_2625960_2 DnaJ central domain K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 428.0
YYD3_k127_2625960_3 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000001927 244.0
YYD3_k127_2625960_4 XdhC and CoxI family K07402 - - 0.00000000000000000000000000000000000000000000000000000000000001514 225.0
YYD3_k127_2625960_5 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000001235 213.0
YYD3_k127_2625960_6 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0017076,GO:0030234,GO:0030246,GO:0030247,GO:0030554,GO:0036094,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065 - 0.000000000000000000000000000000000000007054 151.0
YYD3_k127_2625960_7 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000007595 138.0
YYD3_k127_2627920_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005939 417.0
YYD3_k127_2627920_1 copper resistance - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 338.0
YYD3_k127_2627920_2 G8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002549 267.0
YYD3_k127_2627920_3 Predicted nucleotidyltransferase K07074 - - 0.00004089 51.0
YYD3_k127_2636907_0 acetylesterase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 430.0
YYD3_k127_2636907_1 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000006166 202.0
YYD3_k127_2651871_0 PQQ-like domain K00114 - 1.1.2.8 3.405e-208 660.0
YYD3_k127_2651871_1 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 332.0
YYD3_k127_26594_0 protein kinase activity K13582,K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 605.0
YYD3_k127_26594_1 translation initiation factor activity K03699 - - 0.0000000000000000000000000000000000000000000000005207 184.0
YYD3_k127_2681407_0 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 359.0
YYD3_k127_2681407_1 hydro-lyase, Fe-S type, tartrate fumarate subfamily, alpha subunit K01677 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 301.0
YYD3_k127_2681407_2 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004437 279.0
YYD3_k127_2681407_3 N-terminal half of MaoC dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006284 269.0
YYD3_k127_2681407_4 Fumarase C-terminus K01678 - 4.2.1.2 0.000000000000000000000000000000000000000000002226 173.0
YYD3_k127_2681407_5 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.00000000000000000000000000000000000002962 146.0
YYD3_k127_2681407_6 - - - - 0.00000000000000000000000000000000002549 145.0
YYD3_k127_2681407_7 PIN domain - - - 0.0000000000000000123 87.0
YYD3_k127_2681407_8 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.000000000007042 70.0
YYD3_k127_2681407_9 PFAM Major facilitator superfamily K08178 - - 0.000000001739 63.0
YYD3_k127_2697738_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004254 594.0
YYD3_k127_2697738_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003445 326.0
YYD3_k127_2697738_2 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003191 297.0
YYD3_k127_2697738_3 - K09957 - - 0.000000000000000000000000000000000000000000000000000000000000004202 226.0
YYD3_k127_2697738_4 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000008328 205.0
YYD3_k127_2697738_5 amidohydrolase - - - 0.000000000000000000001492 108.0
YYD3_k127_2697738_6 Belongs to the TPP enzyme family K01577,K01652 - 2.2.1.6,4.1.1.8 0.00000000000006155 73.0
YYD3_k127_2697738_7 DinB family - - - 0.00000002025 62.0
YYD3_k127_2708933_0 CoA binding domain - - - 0.0 1186.0
YYD3_k127_2708933_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1123.0
YYD3_k127_2708933_10 PFAM DoxX family protein K15977 - - 0.00000000000000000000000000000001278 138.0
YYD3_k127_2708933_12 Outer membrane efflux protein - - - 0.0000003433 63.0
YYD3_k127_2708933_13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00002216 53.0
YYD3_k127_2708933_14 YtkA-like - - - 0.0001622 51.0
YYD3_k127_2708933_2 Belongs to the TPP enzyme family K01577,K01652 - 2.2.1.6,4.1.1.8 2.533e-263 814.0
YYD3_k127_2708933_3 Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate K07749 - 2.8.3.16 1.215e-243 755.0
YYD3_k127_2708933_4 Aldehyde dehydrogenase family K00146,K11947 - 1.2.1.39 2.505e-234 736.0
YYD3_k127_2708933_5 Sugar (and other) transporter - - - 3.978e-218 684.0
YYD3_k127_2708933_6 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 618.0
YYD3_k127_2708933_7 Shikimate dehydrogenase substrate binding domain K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 375.0
YYD3_k127_2708933_8 Peptidase, M16 K07263 - - 0.0000000000000000000000000000000000000000000000000000000006484 218.0
YYD3_k127_2708933_9 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000000000000000000000000000000001973 168.0
YYD3_k127_2727343_0 metallopeptidase activity K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001681 515.0
YYD3_k127_2727343_1 Putative modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004967 418.0
YYD3_k127_2727343_2 Domain of unknown function (DU1801) - - - 0.0000000000001018 74.0
YYD3_k127_2756074_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000007639 234.0
YYD3_k127_2756074_1 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000006686 169.0
YYD3_k127_2756074_2 PAS fold K07710 GO:0000155,GO:0000160,GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0017076,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564 2.7.13.3 0.0000000000000000000000000000000000000000001137 177.0
YYD3_k127_2756074_3 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.00000000000000000000000000000000000007925 165.0
YYD3_k127_2756074_4 TPR repeat - - - 0.00006791 54.0
YYD3_k127_2756074_5 Type IV Pilus-assembly protein W K02672 - - 0.0005172 52.0
YYD3_k127_2771328_0 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 388.0
YYD3_k127_2771328_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000004552 169.0
YYD3_k127_2771328_2 Phosphate transport system permease K02038 - - 0.0000000000000000000000000001673 121.0
YYD3_k127_2771328_3 - - - - 0.0000000000000000000000001335 111.0
YYD3_k127_2784603_0 Glycosyl hydrolase family 57 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008752 538.0
YYD3_k127_2784603_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K08483 - 2.7.3.9,2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007907 414.0
YYD3_k127_2784603_10 Glucosamine-6-phosphate deaminase K02564 - 3.5.99.6 0.00000000000000000000000000000000000000000000000000000000000000003006 230.0
YYD3_k127_2784603_11 chromosome segregation K03497 - - 0.00000000000000000000000000000000000000000000000000000000002675 216.0
YYD3_k127_2784603_12 Bifunctional nuclease K03617,K08999 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000001311 199.0
YYD3_k127_2784603_13 MotA TolQ ExbB proton channel K03562 - - 0.000000000000000000000000000000000000000000000000000005731 199.0
YYD3_k127_2784603_14 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000115 166.0
YYD3_k127_2784603_15 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000000000000000003395 160.0
YYD3_k127_2784603_16 BadF BadG BcrA BcrD K00884,K02616 - 2.7.1.59 0.000000000000000000000000000000000000007102 153.0
YYD3_k127_2784603_17 COG2893 Phosphotransferase system, mannose fructose-specific component IIA K02793 - 2.7.1.191 0.00000000000000000000000000000000008667 137.0
YYD3_k127_2784603_18 PHP domain protein - - - 0.0000000000000000000000000000000001621 152.0
YYD3_k127_2784603_19 OmpA family K03640 - - 0.0000000000000000000000000000000003721 141.0
YYD3_k127_2784603_2 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 410.0
YYD3_k127_2784603_20 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.0000000000000000000005946 101.0
YYD3_k127_2784603_21 phosphocarrier protein HPr K11189 - - 0.0000000000000000000006219 98.0
YYD3_k127_2784603_22 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000001241 60.0
YYD3_k127_2784603_23 TonB C terminal - - - 0.00004235 54.0
YYD3_k127_2784603_3 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 374.0
YYD3_k127_2784603_4 Permease YjgP YjgQ family protein K07091,K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 379.0
YYD3_k127_2784603_5 Belongs to the 'phage' integrase family K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 297.0
YYD3_k127_2784603_6 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000134 282.0
YYD3_k127_2784603_7 Cobyrinic acid ac-diamide synthase K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006188 280.0
YYD3_k127_2784603_8 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.00000000000000000000000000000000000000000000000000000000000000000000000000003663 270.0
YYD3_k127_2784603_9 TolB amino-terminal domain K03641 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006810,GO:0008104,GO:0008150,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0015031,GO:0015833,GO:0015893,GO:0017038,GO:0019534,GO:0019904,GO:0022857,GO:0030288,GO:0030313,GO:0031975,GO:0032153,GO:0032991,GO:0033036,GO:0042221,GO:0042493,GO:0042597,GO:0042886,GO:0042891,GO:0043213,GO:0044464,GO:0044877,GO:0045184,GO:0046677,GO:0046678,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071236,GO:0071237,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901998 - 0.00000000000000000000000000000000000000000000000000000000000000000007473 249.0
YYD3_k127_2786150_0 Glutamine synthetase type III K01915 - 6.3.1.2 1.287e-226 713.0
YYD3_k127_2786150_1 glutamine synthetase K01915 - 6.3.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008481 589.0
YYD3_k127_2792285_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 1.763e-205 657.0
YYD3_k127_2792285_1 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000003547 265.0
YYD3_k127_2792285_2 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000002841 169.0
YYD3_k127_2792285_3 Belongs to the 'phage' integrase family - - - 0.000000000000000001357 87.0
YYD3_k127_2792285_4 Cupin domain - - - 0.00000000000000005617 84.0
YYD3_k127_2792285_5 PFAM plasmid stabilization system - - - 0.00000000009769 66.0
YYD3_k127_2792285_6 - - - - 0.0000000008333 64.0
YYD3_k127_2792285_7 Putative addiction module component - - - 0.0000006275 54.0
YYD3_k127_2799528_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000005791 235.0
YYD3_k127_2799528_1 Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000017 127.0
YYD3_k127_2799717_0 56kDa selenium binding protein (SBP56) K17285 - - 4.367e-223 699.0
YYD3_k127_2799717_1 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000569 438.0
YYD3_k127_2799717_2 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.00000000000000000000000000001143 120.0
YYD3_k127_2799717_4 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000002343 110.0
YYD3_k127_2807821_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 9.325e-194 617.0
YYD3_k127_2807821_1 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 572.0
YYD3_k127_2807821_2 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007372 409.0
YYD3_k127_2807821_3 - - - - 0.0000000000000000000000005642 118.0
YYD3_k127_2813740_0 DNA-directed DNA polymerase K02337 - 2.7.7.7 0.0 1122.0
YYD3_k127_2813740_1 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004536 516.0
YYD3_k127_2813740_2 exonuclease K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 471.0
YYD3_k127_2813740_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007781 343.0
YYD3_k127_2813740_4 lipopolysaccharide transport protein B ATP-binding component of ABC superfamily K01990,K06861 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 332.0
YYD3_k127_2813740_5 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.0000000000000000000000000000000000000000000001694 177.0
YYD3_k127_2813740_6 lipopolysaccharide transport K09774 - - 0.0001763 55.0
YYD3_k127_2845780_0 NADH-quinone oxidoreductase chain L K00341,K05577 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 473.0
YYD3_k127_2845780_1 NAD binding K00333,K05579,K13378 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 437.0
YYD3_k127_2845780_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 301.0
YYD3_k127_2845780_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000005345 223.0
YYD3_k127_2845780_4 4Fe-4S dicluster domain K00338,K02573,K03941 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000587 144.0
YYD3_k127_2845780_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340,K05576 - 1.6.5.3 0.0000000000000000000000000000003932 126.0
YYD3_k127_2845780_6 Respiratory-chain NADH dehydrogenase, 30 Kd subunit K00332 - 1.6.5.3 0.00000000000000000000000008212 113.0
YYD3_k127_2845780_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330,K05574 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.00000000000000000000000343 106.0
YYD3_k127_2845780_8 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339,K05578 - 1.6.5.3 0.0000000000000000000003771 108.0
YYD3_k127_2845780_9 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.0000000000002301 72.0
YYD3_k127_2850296_0 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 372.0
YYD3_k127_2880722_0 Histidine kinase - - - 1.142e-205 667.0
YYD3_k127_2880722_1 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 529.0
YYD3_k127_2880722_2 epoxide hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 317.0
YYD3_k127_2880722_3 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 295.0
YYD3_k127_2880722_4 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000003649 172.0
YYD3_k127_2880722_5 SMART protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.00004089 48.0
YYD3_k127_2900127_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 6.214e-265 824.0
YYD3_k127_2900127_1 phosphoenolpyruvate carboxykinase (ATP) activity K01610 GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0071704,GO:1901576 4.1.1.49 3.437e-225 709.0
YYD3_k127_2900127_10 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003145 311.0
YYD3_k127_2900127_11 Metal-dependent hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 300.0
YYD3_k127_2900127_12 PFAM alanine racemase domain protein K20757 - 4.3.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 296.0
YYD3_k127_2900127_13 MOFRL family K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 301.0
YYD3_k127_2900127_14 Cell division ATP-binding protein ftsE K09811,K09812 GO:0000166,GO:0000287,GO:0000910,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007049,GO:0008144,GO:0008150,GO:0008356,GO:0009898,GO:0009966,GO:0009987,GO:0010646,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019897,GO:0019898,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0030145,GO:0030554,GO:0031234,GO:0032153,GO:0032506,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042173,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043937,GO:0043938,GO:0044085,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0046677,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051301,GO:0065007,GO:0070297,GO:0071840,GO:0071944,GO:0090529,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363,GO:1902531 - 0.000000000000000000000000000000000000000000000000000000000000000000000000002215 260.0
YYD3_k127_2900127_15 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001205 255.0
YYD3_k127_2900127_16 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000000000004009 217.0
YYD3_k127_2900127_17 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000002282 218.0
YYD3_k127_2900127_18 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000008494 184.0
YYD3_k127_2900127_19 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000004364 184.0
YYD3_k127_2900127_2 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 4.423e-200 649.0
YYD3_k127_2900127_20 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0016032,GO:0016465,GO:0019058,GO:0019068,GO:0032991,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051704,GO:0061077,GO:0101031,GO:1990220 - 0.00000000000000000000000000000000000369 141.0
YYD3_k127_2900127_21 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000001331 151.0
YYD3_k127_2900127_22 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811,K09812 GO:0000910,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006928,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008356,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0016020,GO:0016021,GO:0016043,GO:0019221,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030312,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0032153,GO:0032506,GO:0034097,GO:0040007,GO:0040011,GO:0042173,GO:0042221,GO:0043207,GO:0043937,GO:0043938,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0048518,GO:0048522,GO:0048583,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070098,GO:0070297,GO:0070887,GO:0071310,GO:0071345,GO:0071840,GO:0071944,GO:0071976,GO:0090529,GO:1902531 - 0.00000000000000000000000000000526 131.0
YYD3_k127_2900127_23 FAD linked oxidases, C-terminal domain K06911 - - 0.000000000000000000000000001094 115.0
YYD3_k127_2900127_24 von Willebrand factor, type A K07114 - - 0.000000000000000000000000001159 126.0
YYD3_k127_2900127_25 TIGRFAM TonB family protein K03832 - - 0.0000000000000000000000006626 115.0
YYD3_k127_2900127_26 DNA-templated transcription, initiation K03088 - - 0.0000000000000000001404 98.0
YYD3_k127_2900127_27 TIGRFAM TonB K03832 - - 0.0000000000000000008764 95.0
YYD3_k127_2900127_28 YjbR - - - 0.000000000000001403 87.0
YYD3_k127_2900127_29 DinB superfamily - - - 0.0000000000001097 82.0
YYD3_k127_2900127_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 554.0
YYD3_k127_2900127_30 Bacterial regulatory protein, Fis family - - - 0.0000000000004592 72.0
YYD3_k127_2900127_31 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000008812 69.0
YYD3_k127_2900127_32 Heavy-metal resistance - - - 0.000000002049 64.0
YYD3_k127_2900127_4 Two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 517.0
YYD3_k127_2900127_5 LytB protein K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004867 431.0
YYD3_k127_2900127_6 histidine kinase HAMP region domain protein K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004328 440.0
YYD3_k127_2900127_7 PFAM SAICAR synthetase K01923,K13713 - 6.3.2.6,6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005555 384.0
YYD3_k127_2900127_8 ATP-binding region, ATPase domain protein domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 401.0
YYD3_k127_2900127_9 Citrate transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 349.0
YYD3_k127_292805_0 Wzt C-terminal domain K09691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 413.0
YYD3_k127_2933555_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 6.094e-285 917.0
YYD3_k127_2933555_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 2.381e-226 709.0
YYD3_k127_2933555_10 histidine kinase A domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 307.0
YYD3_k127_2933555_11 aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001116 290.0
YYD3_k127_2933555_12 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002366 262.0
YYD3_k127_2933555_13 Bacterial regulatory protein, Fis family K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002639 263.0
YYD3_k127_2933555_14 ABC-2 type transporter K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000559 258.0
YYD3_k127_2933555_15 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000003479 250.0
YYD3_k127_2933555_16 Two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000005137 246.0
YYD3_k127_2933555_17 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000003457 220.0
YYD3_k127_2933555_18 Psort location CytoplasmicMembrane, score - - - 0.00000000000000000000000000000000000000000000000000002623 213.0
YYD3_k127_2933555_19 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000002308 205.0
YYD3_k127_2933555_2 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008710,GO:0008890,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003972 484.0
YYD3_k127_2933555_20 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.0000000000000000000000000000000000000000000009306 176.0
YYD3_k127_2933555_21 diguanylate cyclase - - - 0.00000000000000000000000000000000000000001642 169.0
YYD3_k127_2933555_22 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.00000000000000000000000000000000000001708 149.0
YYD3_k127_2933555_23 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K02405 - - 0.0000000000000000000000000000000000002398 154.0
YYD3_k127_2933555_24 AI-2E family transporter K03548 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.000000000000000000000000000000000003894 150.0
YYD3_k127_2933555_25 Transcription termination factor nusG - - - 0.00000000000000000000000000000000002075 143.0
YYD3_k127_2933555_26 Belongs to the ompA family - - - 0.0000000000000000000000000000002405 132.0
YYD3_k127_2933555_27 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.0000000000000000000000000000003123 127.0
YYD3_k127_2933555_28 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000008245 128.0
YYD3_k127_2933555_29 Belongs to the peptidase S1C family K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.000000000000002558 87.0
YYD3_k127_2933555_3 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008961 452.0
YYD3_k127_2933555_30 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000431 72.0
YYD3_k127_2933555_31 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.00000000000005025 83.0
YYD3_k127_2933555_32 PFAM response regulator receiver K02481,K07712 - - 0.0000000000006365 74.0
YYD3_k127_2933555_34 Tfp pilus assembly protein pilus retraction ATPase PilT K02669 - - 0.0000000001602 74.0
YYD3_k127_2933555_35 PFAM Stress responsive A B Barrel Domain - - - 0.00002156 51.0
YYD3_k127_2933555_36 Amino acid adenylation domain - - - 0.00007884 45.0
YYD3_k127_2933555_37 recombinase activity - - - 0.0002926 46.0
YYD3_k127_2933555_38 Glutamine synthetase, beta-Grasp domain K01915 - 6.3.1.2 0.000336 52.0
YYD3_k127_2933555_4 ATPases associated with a variety of cellular activities K01990,K09689,K09691,K09693 - 3.6.3.38,3.6.3.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008953 438.0
YYD3_k127_2933555_5 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 402.0
YYD3_k127_2933555_6 PFAM aminotransferase, class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 370.0
YYD3_k127_2933555_7 phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 350.0
YYD3_k127_2933555_8 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004775 359.0
YYD3_k127_2933555_9 ATP synthesis coupled electron transport K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 341.0
YYD3_k127_2938925_0 double-stranded DNA 3'-5' exodeoxyribonuclease activity K01142 - 3.1.11.2 0.00000000000000006754 91.0
YYD3_k127_2938925_1 CAAX protease self-immunity - - - 0.000009105 56.0
YYD3_k127_293967_0 Common central domain of tyrosinase K00505 - 1.14.18.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 479.0
YYD3_k127_293967_1 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006584 491.0
YYD3_k127_293967_10 NMT1-like family K02051 - - 0.000000001268 71.0
YYD3_k127_293967_2 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 491.0
YYD3_k127_293967_3 Amidohydrolase K10220 - 4.2.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007446 442.0
YYD3_k127_293967_4 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 396.0
YYD3_k127_293967_6 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000004244 149.0
YYD3_k127_293967_7 domain protein K14194 - - 0.0000000000000000000000000000007702 141.0
YYD3_k127_293967_8 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000004873 119.0
YYD3_k127_293967_9 Surface antigen - - - 0.0000000000000004801 91.0
YYD3_k127_2944904_0 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 537.0
YYD3_k127_2944904_1 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000000000000000000000000000000000004114 173.0
YYD3_k127_2982106_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1149.0
YYD3_k127_2982106_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 7.138e-223 708.0
YYD3_k127_2982106_2 PA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 509.0
YYD3_k127_2982106_3 PA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007348 425.0
YYD3_k127_2982106_4 PFAM glycosyl transferase family 51 K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004381 393.0
YYD3_k127_2982106_5 DnaJ molecular chaperone homology domain K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 311.0
YYD3_k127_2982106_6 PFAM Integral membrane protein TerC - - - 0.0000000000000000000000000000000000000000001343 168.0
YYD3_k127_2982106_7 COG2818 3-methyladenine DNA glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000002231 130.0
YYD3_k127_2982106_8 RNA recognition motif - - - 0.000000000000000000000116 100.0
YYD3_k127_2982106_9 helix_turn_helix, mercury resistance K13640 - - 0.00000000000000000007914 98.0
YYD3_k127_2989543_0 TonB-dependent Receptor Plug K02014 - - 0.0 1012.0
YYD3_k127_2989543_1 DNA topological change K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 627.0
YYD3_k127_2989543_10 WHG domain - - - 0.000000000000000000000000000000000000169 153.0
YYD3_k127_2989543_11 Domain of unknown function (DUF4281) - - - 0.0000000000000000000000000000000000003485 144.0
YYD3_k127_2989543_12 - - - - 0.00000000000000000000000000000000003638 153.0
YYD3_k127_2989543_13 Cytochrome C' - - - 0.0000000000000000000000000000000001137 141.0
YYD3_k127_2989543_14 - - - - 0.00000000000000000000000000000004859 134.0
YYD3_k127_2989543_15 histone H2A K63-linked ubiquitination - - - 0.00000000000000000000000000000007946 134.0
YYD3_k127_2989543_16 membrane transporter protein K07090 - - 0.00000000000000000000001036 111.0
YYD3_k127_2989543_17 Cupin domain - - - 0.000392 44.0
YYD3_k127_2989543_2 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004038 332.0
YYD3_k127_2989543_3 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 324.0
YYD3_k127_2989543_4 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000847 268.0
YYD3_k127_2989543_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001634 252.0
YYD3_k127_2989543_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000002993 250.0
YYD3_k127_2989543_7 Patatin-like phospholipase - - - 0.000000000000000000000000000000000000000000000000000000000000000002356 256.0
YYD3_k127_2989543_8 Ankyrin repeats (many copies) - - - 0.000000000000000000000000000000000000000000000000000000000000065 242.0
YYD3_k127_2989543_9 protein serine/threonine phosphatase activity K01090,K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000001914 201.0
YYD3_k127_2993088_0 Belongs to the peptidase M16 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003642 451.0
YYD3_k127_2993088_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 343.0
YYD3_k127_2993088_2 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.3.2.2 0.000003476 48.0
YYD3_k127_299955_0 Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375 470.0
YYD3_k127_3010248_0 peptidoglycan-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 304.0
YYD3_k127_3010248_1 COG0739 Membrane proteins related to metalloendopeptidases K21472 - - 0.000000000000000000000000000009824 125.0
YYD3_k127_3047850_0 response regulator K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002913 349.0
YYD3_k127_3047850_1 carbamoyl transferase, NodU family K00612,K16035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 363.0
YYD3_k127_3047850_2 Histidine kinase K13598 - 2.7.13.3 0.0000000000000000000000000000000000002056 159.0
YYD3_k127_3047850_3 Zinc metalloprotease (Elastase) K01400,K08605,K08777 - 3.4.24.28,3.4.24.30 0.0000000000000000000000000000000002859 151.0
YYD3_k127_3047850_4 PAP2 superfamily - - - 0.0000000000000000000000000000008923 132.0
YYD3_k127_3047850_5 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000001473 123.0
YYD3_k127_3047850_6 - - - - 0.000000000000000003006 91.0
YYD3_k127_3047850_7 UDP-N-acetylglucosamine 2-epimerase activity - - - 0.00000006188 65.0
YYD3_k127_3077844_0 - - - - 0.0000002094 64.0
YYD3_k127_3080606_0 polysaccharide catabolic process K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 308.0
YYD3_k127_3080606_1 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000000001322 203.0
YYD3_k127_3080606_2 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000000000000002838 197.0
YYD3_k127_3080606_3 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000001068 188.0
YYD3_k127_3080606_4 SMP-30/Gluconolaconase/LRE-like region - - - 0.000000000000000000000000000000000000003298 160.0
YYD3_k127_3080606_5 PAS fold - - - 0.000000000000000000000000000007313 123.0
YYD3_k127_3080606_6 von Willebrand factor type A domain - - - 0.0000000000000009872 88.0
YYD3_k127_3080606_7 efflux transmembrane transporter activity - - - 0.00000000001007 72.0
YYD3_k127_3084883_0 cAMP biosynthetic process K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 454.0
YYD3_k127_3084883_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000955 49.0
YYD3_k127_3125305_0 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005997 473.0
YYD3_k127_3125305_1 Transporter associated domain K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000352 431.0
YYD3_k127_3125305_2 e3 binding domain K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 428.0
YYD3_k127_3125305_3 response regulator K02481,K07715 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 371.0
YYD3_k127_3125305_4 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000001845 227.0
YYD3_k127_3125305_5 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000206 158.0
YYD3_k127_3125305_6 Transporter associated domain K03699 - - 0.000000000000000000000000000000000000000005148 160.0
YYD3_k127_3125305_7 SNF2 family N-terminal domain - - - 0.000000000000000000000000000000005707 138.0
YYD3_k127_3125305_8 Smr domain - - - 0.000000000000000000006385 96.0
YYD3_k127_3125305_9 regulation of translation K03530 - - 0.0000000000000000000837 93.0
YYD3_k127_3162740_0 - - - - 2.924e-212 677.0
YYD3_k127_3162740_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002918 489.0
YYD3_k127_3162740_2 protein catabolic process K03420,K13525,K17681 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 400.0
YYD3_k127_3162740_3 - - - - 0.0000000000000000000000000000000005077 141.0
YYD3_k127_3162740_4 - - - - 0.0000000000000000000000005273 115.0
YYD3_k127_3162740_5 - - - - 0.000000000000000000005493 106.0
YYD3_k127_3162740_6 Signal peptidase (SPase) II K03101 - 3.4.23.36 0.0000002358 59.0
YYD3_k127_3164627_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000795 374.0
YYD3_k127_3164627_1 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000489 180.0
YYD3_k127_3164627_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000001472 152.0
YYD3_k127_3173875_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 544.0
YYD3_k127_3173875_1 OmpA family - - - 0.0000000000000000000006472 107.0
YYD3_k127_3173875_2 Carboxypeptidase regulatory-like domain - - - 0.0000000004193 64.0
YYD3_k127_3173875_3 cAMP biosynthetic process - - - 0.00002662 48.0
YYD3_k127_3194084_0 Tricorn protease PDZ domain K08676 - - 0.0 1257.0
YYD3_k127_3194084_1 transport - - - 3.073e-209 691.0
YYD3_k127_3194084_2 3-demethylubiquinone-9 3-methyltransferase K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009045 303.0
YYD3_k127_3194084_3 NADPH-dependent F420 reductase K06988 - 1.5.1.40 0.0000000000000000000000000000000000000000000000000000000000000007003 226.0
YYD3_k127_3194084_4 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000005778 50.0
YYD3_k127_3200818_0 Malonyl-CoA decarboxylase N-terminal domain K01578 - 4.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008175 401.0
YYD3_k127_3200818_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000004099 214.0
YYD3_k127_3200818_2 PFAM Tannase and feruloyl esterase - - - 0.000000000000000000000000000000000000001981 150.0
YYD3_k127_3200818_3 Prolyl oligopeptidase family - - - 0.0000000002631 63.0
YYD3_k127_3200966_0 Amidohydrolase family K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003426 342.0
YYD3_k127_3200966_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000002 229.0
YYD3_k127_3200966_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000812 208.0
YYD3_k127_3200966_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000001114 104.0
YYD3_k127_3200966_4 COG3404 Methenyl tetrahydrofolate cyclohydrolase - - - 0.000000000000000000003079 102.0
YYD3_k127_3214981_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0000098,GO:0000166,GO:0003674,GO:0003824,GO:0004013,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009087,GO:0009116,GO:0009119,GO:0009987,GO:0016020,GO:0016054,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0019899,GO:0022610,GO:0030260,GO:0030312,GO:0033353,GO:0034641,GO:0035375,GO:0035635,GO:0036094,GO:0040007,GO:0042278,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0044403,GO:0044406,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0044650,GO:0046085,GO:0046128,GO:0046395,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048037,GO:0050662,GO:0051186,GO:0051287,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0055086,GO:0070403,GO:0071704,GO:0071944,GO:0072521,GO:0097159,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901657 3.3.1.1 1.294e-213 675.0
YYD3_k127_3214981_1 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 445.0
YYD3_k127_3214981_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 312.0
YYD3_k127_3214981_3 SdrD B-like domain - - - 0.0009086 50.0
YYD3_k127_324237_0 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004377 377.0
YYD3_k127_324237_1 Chromate resistance exported protein - - - 0.000000000000000000000000000000000001048 143.0
YYD3_k127_324237_2 efflux transmembrane transporter activity - - - 0.000000008114 61.0
YYD3_k127_324237_3 - - - - 0.00006976 50.0
YYD3_k127_3247686_0 peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 404.0
YYD3_k127_3252074_0 epimerase, PhzC PhzF homolog K06998 - 5.3.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 380.0
YYD3_k127_3252074_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000776 226.0
YYD3_k127_3252074_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000002529 184.0
YYD3_k127_325247_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006874 452.0
YYD3_k127_325247_1 ABC transporter K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000001029 229.0
YYD3_k127_325247_2 CDP-alcohol phosphatidyltransferase - - - 0.00000000000000000000000000000000000000000000000004679 196.0
YYD3_k127_325453_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000005352 183.0
YYD3_k127_325453_1 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.00000000000000000000000000000002614 147.0
YYD3_k127_3262680_0 PFAM Radical SAM - - - 4.493e-225 707.0
YYD3_k127_3262680_1 lipolytic protein G-D-S-L family - - - 1.932e-206 651.0
YYD3_k127_3262680_10 Spore coat polysaccharide biosynthesis protein - - - 0.0000009743 60.0
YYD3_k127_3262680_11 glycolate biosynthetic process K07025 - - 0.00009573 49.0
YYD3_k127_3262680_2 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 391.0
YYD3_k127_3262680_3 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 407.0
YYD3_k127_3262680_4 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 295.0
YYD3_k127_3262680_5 N-acylneuraminate-9-phosphate synthase activity K01654,K18430 GO:0003674,GO:0003824,GO:0005975,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016740,GO:0016765,GO:0044238,GO:0071704,GO:1901576 2.5.1.101,2.5.1.56 0.000000000000000000000000000000000000000000000000000000000004237 221.0
YYD3_k127_3262680_6 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000001055 135.0
YYD3_k127_3262680_7 CarboxypepD_reg-like domain - - - 0.00000000000000000000000003351 127.0
YYD3_k127_3262680_8 Acetyltransferase (GNAT) domain - - - 0.00000000000000679 86.0
YYD3_k127_3262680_9 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000007082 61.0
YYD3_k127_3265289_0 transcription factor binding K02584,K12146,K12266,K15836,K21009 GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001724 260.0
YYD3_k127_3265289_1 Short repeat of unknown function (DUF308) - - - 0.000000000000000000000000000000000000000000000004099 193.0
YYD3_k127_3265289_2 Protein of unknown function (DUF1269) - - - 0.0000000000000000000000000000000000000000001467 171.0
YYD3_k127_3265289_5 AI-2E family transporter - - - 0.00007712 55.0
YYD3_k127_3289441_0 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 451.0
YYD3_k127_3289441_1 SelR domain K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000004058 227.0
YYD3_k127_3289441_2 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000003485 116.0
YYD3_k127_3289441_3 - - - - 0.00000000000000000000002179 110.0
YYD3_k127_3289441_4 cellular response to DNA damage stimulus K07340 - - 0.000000000005895 72.0
YYD3_k127_3289441_5 Cytosine deaminase and related metal-dependent hydrolases - - - 0.00000003652 55.0
YYD3_k127_3324126_0 Pyruvate:ferredoxin oxidoreductase core domain II K03737 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016491,GO:0050896,GO:0055114 1.2.7.1 0.0 1091.0
YYD3_k127_3324126_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01576,K01652 - 2.2.1.6,4.1.1.7 5.491e-215 687.0
YYD3_k127_3324126_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004479 479.0
YYD3_k127_3324126_3 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K11779,K11784,K18285 - 1.21.98.1,2.5.1.120,2.5.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003305 466.0
YYD3_k127_3324126_4 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 321.0
YYD3_k127_3324126_5 ATPases associated with a variety of cellular activities K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000000006111 237.0
YYD3_k127_3324126_6 Diphthamide synthase - - - 0.00000000000000000000000000000000000000000000009782 179.0
YYD3_k127_3324126_7 iron ion homeostasis K02015,K06073 - - 0.00000000000000000001469 97.0
YYD3_k127_3324126_9 Cytochrome c K17760 - 1.1.9.1 0.0000000001331 73.0
YYD3_k127_3343716_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 437.0
YYD3_k127_3343716_1 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000002543 164.0
YYD3_k127_3351105_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006718 424.0
YYD3_k127_3351105_1 DNA integration - - - 0.0000000000000182 83.0
YYD3_k127_3351105_2 Sulfatase - - - 0.00000002635 55.0
YYD3_k127_3400698_0 - - - - 0.00000000000000000000000000000000000000000001415 168.0
YYD3_k127_3400698_1 - - - - 0.0000000000000000000000000008018 115.0
YYD3_k127_3400698_2 Belongs to the 'phage' integrase family - - - 0.0000000000000000000007621 99.0
YYD3_k127_3400698_3 Protein of unknown function (DUF433) - - - 0.0000000000000000000009112 96.0
YYD3_k127_3400698_4 - - - - 0.00000000000000003527 85.0
YYD3_k127_3416856_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008332 390.0
YYD3_k127_3416856_1 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 395.0
YYD3_k127_3416856_10 chemotaxis protein K03406,K13487 - - 0.00000000000909 77.0
YYD3_k127_3416856_11 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000001237 66.0
YYD3_k127_3416856_13 InterProIPR000673 IPR000780 IPR013656 IPR003661 IPR 003594 IPR005467 IPR009082 - - - 0.00001352 56.0
YYD3_k127_3416856_14 Domain of unknown function (DUF4115) - - - 0.00003423 57.0
YYD3_k127_3416856_2 Transglycosylase SLT domain K08309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001889 269.0
YYD3_k127_3416856_3 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000001114 235.0
YYD3_k127_3416856_4 Ferredoxin-fold anticodon binding domain K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.0000000000000000000000000000000000000000000000006159 187.0
YYD3_k127_3416856_5 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000006085 179.0
YYD3_k127_3416856_6 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000001756 132.0
YYD3_k127_3416856_7 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000002148 123.0
YYD3_k127_3416856_8 cheY-homologous receiver domain - - - 0.000000000000000000000001025 109.0
YYD3_k127_3416856_9 3D domain - - - 0.00000000000000632 83.0
YYD3_k127_3422250_0 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008047 580.0
YYD3_k127_3422250_1 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 526.0
YYD3_k127_3422250_2 Phenylalanine-4-hydroxylase K00500 GO:0003674,GO:0003824,GO:0004497,GO:0004505,GO:0006082,GO:0006520,GO:0006558,GO:0006559,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016491,GO:0016705,GO:0016714,GO:0017144,GO:0019439,GO:0019752,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222 1.14.16.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 470.0
YYD3_k127_3422250_3 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000004682 237.0
YYD3_k127_3422250_4 Uncharacterised protein family UPF0066 - - - 0.00000000000000000000000000000000000000000000000000006131 195.0
YYD3_k127_3422250_5 - - - - 0.00000000000000000000000000000000000000000005994 169.0
YYD3_k127_3422250_6 - - - - 0.000000000000000000000000002976 116.0
YYD3_k127_3422250_7 - - - - 0.0000000000000000000000004376 109.0
YYD3_k127_3422250_8 - - - - 0.0000000000000005892 87.0
YYD3_k127_3424927_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 587.0
YYD3_k127_3424927_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.000000000000000000000000000000000000003273 152.0
YYD3_k127_3424927_2 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000000007289 147.0
YYD3_k127_3424927_3 - - - - 0.000000000000000005932 89.0
YYD3_k127_3483855_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 508.0
YYD3_k127_3483855_1 PFAM short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004047 245.0
YYD3_k127_3483855_2 DinB superfamily - - - 0.00000000000000000008954 95.0
YYD3_k127_3494842_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1156.0
YYD3_k127_3494842_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 447.0
YYD3_k127_3494842_10 Biopolymer transport protein ExbD/TolR K03559 - - 0.000000000000000000117 96.0
YYD3_k127_3494842_11 Preprotein translocase, YajC K03210 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031522,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000002978 81.0
YYD3_k127_3494842_12 ATP-binding region ATPase domain protein - - - 0.000004111 50.0
YYD3_k127_3494842_2 Type I phosphodiesterase / nucleotide pyrophosphatase K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 410.0
YYD3_k127_3494842_3 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002439 274.0
YYD3_k127_3494842_4 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000001339 254.0
YYD3_k127_3494842_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000001031 242.0
YYD3_k127_3494842_6 MotA TolQ ExbB proton channel K03561,K03562 - - 0.0000000000000000000000000000000000000000000000000000000000000009477 228.0
YYD3_k127_3494842_7 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000000005461 155.0
YYD3_k127_3494842_8 TIGRFAM TonB K03832 - - 0.00000000000000000000000000000000000007338 151.0
YYD3_k127_3494842_9 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000001569 105.0
YYD3_k127_3504451_0 pyrroline-5-carboxylate reductase activity K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000008116 240.0
YYD3_k127_3504451_1 Arsenite-activated ATPase (ArsA) K01551 - 3.6.3.16 0.0000000000000000000000000000000000000000000001578 174.0
YYD3_k127_3504451_2 Arsenical resistance operon trans-acting repressor arsD - - - 0.00000000000000000000000000000000009573 136.0
YYD3_k127_3504451_3 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000000000000001255 126.0
YYD3_k127_3504451_4 PFAM regulatory protein ArsR K03892 - - 0.0000000000000000000000001015 111.0
YYD3_k127_3510817_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1234.0
YYD3_k127_3510817_1 Amino acid kinase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 514.0
YYD3_k127_3510817_10 PFAM regulatory protein, MarR - - - 0.0000000000000000000000000006682 120.0
YYD3_k127_3510817_11 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000587 103.0
YYD3_k127_3510817_12 DNA-sulfur modification-associated - - - 0.00000000000000000004529 102.0
YYD3_k127_3510817_13 PFAM OsmC family protein K07397 - - 0.000000000000000000293 92.0
YYD3_k127_3510817_14 Domain of unknown function (DUF4115) K15539 - - 0.0001453 51.0
YYD3_k127_3510817_2 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004942 344.0
YYD3_k127_3510817_3 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005215 294.0
YYD3_k127_3510817_4 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002203 293.0
YYD3_k127_3510817_5 PFAM Chlorite dismutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006651 268.0
YYD3_k127_3510817_6 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000000000000000000002332 233.0
YYD3_k127_3510817_7 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000001398 238.0
YYD3_k127_3510817_8 high-affinity ferrous iron transmembrane transporter activity K07243 - - 0.0000000000000000000000000000000000000000000000000005393 193.0
YYD3_k127_3510817_9 Membrane - - - 0.00000000000000000000000000000000000003369 157.0
YYD3_k127_3540612_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 1.076e-206 659.0
YYD3_k127_3540612_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000492 372.0
YYD3_k127_3540612_2 Phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 358.0
YYD3_k127_3540612_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000005491 213.0
YYD3_k127_3540612_4 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000008392 148.0
YYD3_k127_3540612_5 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000000371 83.0
YYD3_k127_355294_0 Beta-galactosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009048 503.0
YYD3_k127_355294_1 SMART band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 404.0
YYD3_k127_355294_2 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000003348 219.0
YYD3_k127_355294_3 NIPSNAP family containing protein - - - 0.00000000000000000002254 95.0
YYD3_k127_355294_4 NfeD-like C-terminal, partner-binding - - - 0.0003718 44.0
YYD3_k127_3559300_0 Enoyl-(Acyl carrier protein) reductase K07124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000515 273.0
YYD3_k127_3559300_1 RibD C-terminal domain - - - 0.000000000000000000000000001082 116.0
YYD3_k127_3559300_2 - - - - 0.00000000001369 66.0
YYD3_k127_3565058_0 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007131 325.0
YYD3_k127_3565058_1 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000000001063 198.0
YYD3_k127_3565058_2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 0.0000000000000000000000000000000001846 141.0
YYD3_k127_3565058_3 - - - - 0.00000000000000000000000000009088 129.0
YYD3_k127_3565058_4 Putative zinc-finger - - - 0.00000000000000000000004497 111.0
YYD3_k127_3565058_5 KaiC K08482 - - 0.000007168 48.0
YYD3_k127_3577856_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 576.0
YYD3_k127_3577856_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000157 112.0
YYD3_k127_3582504_0 COG0463 Glycosyltransferases involved in cell wall biogenesis K20444 - - 0.0 1142.0
YYD3_k127_3606876_0 histone H2A-K13 ubiquitination K01338,K07157 - 3.4.21.53 0.000000000000000000000000000000001074 138.0
YYD3_k127_3606876_2 Amidohydrolase family - - - 0.0000000000002834 81.0
YYD3_k127_3606876_3 Protein of unknown function (DUF1573) - - - 0.000000000002728 78.0
YYD3_k127_3606876_4 Protein of unknown function (DUF1552) - - - 0.000009793 48.0
YYD3_k127_3606876_5 PEGA domain - - - 0.00003236 55.0
YYD3_k127_3628493_0 PQQ-like domain K00114 - 1.1.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008356 535.0
YYD3_k127_3628493_1 - - - - 0.000000000000000000000000000000000000000000000000000000001635 212.0
YYD3_k127_3628493_2 Cytochrome c - - - 0.00000000000000000000000000000000002374 143.0
YYD3_k127_3628667_0 Tetratricopeptide repeat K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 514.0
YYD3_k127_3628667_1 Alkaline phosphatase K01113 - 3.1.3.1 0.000000000000000000008783 95.0
YYD3_k127_3643192_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 402.0
YYD3_k127_3645719_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 7.952e-291 918.0
YYD3_k127_3645719_1 cellulose binding - - - 3.614e-229 712.0
YYD3_k127_3645719_10 - - - - 0.000000000000000000000000003267 124.0
YYD3_k127_3645719_11 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000002611 110.0
YYD3_k127_3645719_12 thiolester hydrolase activity K01259,K06889,K12269 - 3.4.11.5 0.0000000000004512 77.0
YYD3_k127_3645719_13 Methionine biosynthesis protein MetW K00568 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.1.1.222,2.1.1.64 0.0004103 53.0
YYD3_k127_3645719_2 Aldolase/RraA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005803 295.0
YYD3_k127_3645719_3 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15061 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002968 291.0
YYD3_k127_3645719_4 Aldolase/RraA - - - 0.000000000000000000000000000000000000000000000000000000000000000000002889 241.0
YYD3_k127_3645719_5 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000008077 241.0
YYD3_k127_3645719_6 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000007103 244.0
YYD3_k127_3645719_7 COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.000000000000000000000000000000000000000000000000000000034 200.0
YYD3_k127_3645719_8 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000005184 202.0
YYD3_k127_3645719_9 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin - - - 0.0000000000000000000000000000000000000000001144 161.0
YYD3_k127_365975_0 - - - - 0.0000000000000000000000000000000000000000000000000000006514 205.0
YYD3_k127_3676513_0 COG0635 Coproporphyrinogen III oxidase and related Fe-S - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 509.0
YYD3_k127_3676513_1 COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 431.0
YYD3_k127_3676513_2 Thioesterase superfamily K07107 - - 0.0000000000000000000001419 102.0
YYD3_k127_3676513_3 - - - - 0.000000000000000000001483 104.0
YYD3_k127_3688223_0 His Kinase A (phosphoacceptor) domain - - - 0.0 1140.0
YYD3_k127_3688223_1 copper-translocating P-type ATPase K17686 - 3.6.3.54 2.669e-239 752.0
YYD3_k127_3688223_10 Belongs to the globin family K05916 - 1.14.12.17 0.00000000000000000000000000000000000000000004092 164.0
YYD3_k127_3688223_11 COG2801 Transposase and inactivated derivatives K07497 - - 0.00000000000000000000000007913 113.0
YYD3_k127_3688223_12 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.000000000000000027 89.0
YYD3_k127_3688223_13 Belongs to the globin family K05916 - 1.14.12.17 0.000000000000002569 85.0
YYD3_k127_3688223_14 E1-E2 ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000002827 73.0
YYD3_k127_3688223_2 Multicopper oxidase - - - 2.363e-213 677.0
YYD3_k127_3688223_3 response to abiotic stimulus K03086,K06867,K06886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 517.0
YYD3_k127_3688223_4 Peptidase dimerisation domain K13049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004745 492.0
YYD3_k127_3688223_5 cAMP biosynthetic process K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 357.0
YYD3_k127_3688223_6 COGs COG5616 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001695 278.0
YYD3_k127_3688223_7 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000001076 253.0
YYD3_k127_3688223_8 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000112 213.0
YYD3_k127_3688223_9 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000002217 173.0
YYD3_k127_369083_0 - K07039 - - 0.0000000000000000000000000000000000000000008029 173.0
YYD3_k127_369083_1 - - - - 0.000000000000000000000006089 115.0
YYD3_k127_369083_2 - - - - 0.00000000000000000001342 97.0
YYD3_k127_369083_3 PIN domain - - - 0.0000000000000000006464 92.0
YYD3_k127_3708564_0 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000001292 181.0
YYD3_k127_3708564_1 - - - - 0.00000000001076 77.0
YYD3_k127_3738615_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 3.001e-199 653.0
YYD3_k127_3738615_1 Putative MetA-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000000000000003102 190.0
YYD3_k127_3738615_2 protein kinase activity - - - 0.0001032 45.0
YYD3_k127_3745696_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 582.0
YYD3_k127_3745696_1 Belongs to the UPF0271 (lamB) family K07160 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002279 272.0
YYD3_k127_3745696_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000004122 87.0
YYD3_k127_3761485_0 Thiamine pyrophosphate protein TPP binding domain protein K01652 - 2.2.1.6 1.639e-278 866.0
YYD3_k127_3761485_1 Belongs to the IlvD Edd family K01687 GO:0003674,GO:0003824,GO:0004160,GO:0016829,GO:0016835,GO:0016836 4.2.1.9 3.706e-264 823.0
YYD3_k127_3761485_10 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0030312,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000004914 211.0
YYD3_k127_3761485_11 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000006032 211.0
YYD3_k127_3761485_12 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000672 211.0
YYD3_k127_3761485_13 Acetolactate synthase, small subunit K01653 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000001919 202.0
YYD3_k127_3761485_14 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000001857 188.0
YYD3_k127_3761485_15 Conserved hypothetical protein 95 - - - 0.0000000000000000000000000000000000005379 148.0
YYD3_k127_3761485_16 CoA-binding protein K06929 - - 0.000000000000000000000000000000000009286 140.0
YYD3_k127_3761485_17 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000905 128.0
YYD3_k127_3761485_18 RNA recognition motif - - - 0.00000000000000000000000000008536 119.0
YYD3_k127_3761485_19 Zincin-like metallopeptidase K00930 - 2.7.2.8 0.00000000000000000000000002963 117.0
YYD3_k127_3761485_2 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 1.435e-196 634.0
YYD3_k127_3761485_20 Periplasmic or secreted lipoprotein - - - 0.0000000000000000001118 100.0
YYD3_k127_3761485_21 PFAM Iron sulphur-containing domain, CDGSH-type - - - 0.0000000000000005323 79.0
YYD3_k127_3761485_3 Ftsk_gamma K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 629.0
YYD3_k127_3761485_4 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 580.0
YYD3_k127_3761485_5 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 491.0
YYD3_k127_3761485_6 FAD linked oxidase K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 440.0
YYD3_k127_3761485_7 Aminotransferase K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 337.0
YYD3_k127_3761485_8 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000001601 285.0
YYD3_k127_3761485_9 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000000000303 249.0
YYD3_k127_3767039_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002836 550.0
YYD3_k127_3767039_1 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 342.0
YYD3_k127_3767039_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006429 301.0
YYD3_k127_3767039_3 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000004481 258.0
YYD3_k127_3767039_4 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000001537 250.0
YYD3_k127_3767039_5 Site-specific DNA-methyltransferase (Adenine-specific) K06223 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000006168 225.0
YYD3_k127_3767039_6 - - - - 0.0000000000000000000000000000000008412 139.0
YYD3_k127_3767039_7 - - - - 0.000000000000008303 78.0
YYD3_k127_3767039_8 2OG-Fe(II) oxygenase superfamily K07336,K07394 - - 0.00000000000003027 83.0
YYD3_k127_3770900_0 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 453.0
YYD3_k127_3770900_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007831 349.0
YYD3_k127_3770900_2 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000004015 240.0
YYD3_k127_3770900_3 collagen metabolic process K01179,K01183 - 3.2.1.14,3.2.1.4 0.00000000000001695 83.0
YYD3_k127_3770900_4 cellulase activity - - - 0.0000000003033 70.0
YYD3_k127_3770900_5 cellulase activity K20276 - - 0.00000817 57.0
YYD3_k127_3795543_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 3.424e-258 806.0
YYD3_k127_3795543_1 Aminomethyltransferase folate-binding domain K15064 - - 3.059e-242 754.0
YYD3_k127_3795543_10 ABC transporter K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 298.0
YYD3_k127_3795543_11 PFAM SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008859 250.0
YYD3_k127_3795543_12 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000000002685 209.0
YYD3_k127_3795543_13 phosphoserine phosphatase activity K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000002028 218.0
YYD3_k127_3795543_14 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000005508 190.0
YYD3_k127_3795543_15 Bacterial-like globin K06886 - - 0.0000000000000000000000000000000000000000000000672 173.0
YYD3_k127_3795543_16 Penicillinase repressor - - - 0.000000000000000000000000000000000505 134.0
YYD3_k127_3795543_17 - K01286 - 3.4.16.4 0.00000000000000000000000000000000217 147.0
YYD3_k127_3795543_19 Tetratricopeptide repeat - - - 0.000000000000000000000002365 118.0
YYD3_k127_3795543_2 Uncharacterised MFS-type transporter YbfB K05548,K05819,K08195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007415 507.0
YYD3_k127_3795543_20 - - - - 0.000000000000000000000008547 110.0
YYD3_k127_3795543_21 protein involved in tolerance to divalent cations K03926 - - 0.0000000000000000000000191 105.0
YYD3_k127_3795543_22 negative regulation of translational initiation - - - 0.0000000000000001644 84.0
YYD3_k127_3795543_23 AAA ATPase domain - - - 0.0000000003702 72.0
YYD3_k127_3795543_24 energy transducer activity - - - 0.000000001022 71.0
YYD3_k127_3795543_25 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000002893 66.0
YYD3_k127_3795543_27 DNA ligase D, 3'-phosphoesterase domain - - - 0.00002691 50.0
YYD3_k127_3795543_28 Septum formation initiator - - - 0.00005667 50.0
YYD3_k127_3795543_3 Histidine ammonia-lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004201 501.0
YYD3_k127_3795543_4 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004212 503.0
YYD3_k127_3795543_5 Cys Met metabolism K01739,K01758 - 2.5.1.48,4.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 473.0
YYD3_k127_3795543_6 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 467.0
YYD3_k127_3795543_7 Oxidoreductase molybdopterin binding domain K07147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 377.0
YYD3_k127_3795543_8 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 321.0
YYD3_k127_3795543_9 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 310.0
YYD3_k127_3797608_0 COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog - - - 0.00000000000000000000000000000000000000000000000000000003033 201.0
YYD3_k127_3797608_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000001695 81.0
YYD3_k127_380284_0 efflux transmembrane transporter activity - - - 3.096e-227 757.0
YYD3_k127_380284_1 Protein of unknown function (DUF763) K09003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 601.0
YYD3_k127_380284_10 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000002859 168.0
YYD3_k127_380284_11 Peptidase M56, BlaR1 - - - 0.0000000000000000000000000000000000000000398 162.0
YYD3_k127_380284_12 Protein of unknown function (DUF1326) - - - 0.00000000000000000000000000008888 116.0
YYD3_k127_380284_13 MgtC family K07507 - - 0.000000000000000000000000001152 125.0
YYD3_k127_380284_14 Phospholipase D Active site motif K01115 - 3.1.4.4 0.000000000000000000000000002809 120.0
YYD3_k127_380284_15 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000005808 115.0
YYD3_k127_380284_16 - - - - 0.00000000008601 69.0
YYD3_k127_380284_17 sirohydrochlorin cobaltochelatase activity K03795 - 4.99.1.3 0.000000005478 61.0
YYD3_k127_380284_18 Protein of unknown function (DUF3617) - - - 0.0002061 44.0
YYD3_k127_380284_19 - - - - 0.0009671 50.0
YYD3_k127_380284_2 PFAM SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006892 469.0
YYD3_k127_380284_3 FCD - - - 0.000000000000000000000000000000000000000000000000000000000005109 219.0
YYD3_k127_380284_4 Protein of unknown function (DUF1326) - - - 0.0000000000000000000000000000000000000000000000000000000006416 204.0
YYD3_k127_380284_5 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.00000000000000000000000000000000000000000000000000004518 197.0
YYD3_k127_380284_6 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000003867 196.0
YYD3_k127_380284_7 Peptidase M56, BlaR1 - - - 0.00000000000000000000000000000000000000000000001071 188.0
YYD3_k127_380284_8 - - - - 0.00000000000000000000000000000000000000000000001092 183.0
YYD3_k127_380284_9 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000001428 173.0
YYD3_k127_3817080_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169,K03737 - 1.2.7.1 2.441e-261 823.0
YYD3_k127_3817080_1 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - - - 0.00000000000000000000000000000000000000000000001762 180.0
YYD3_k127_3817080_2 COG0517, FOG CBS domain - - - 0.00000000000000000000007676 104.0
YYD3_k127_3817080_3 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000005793 74.0
YYD3_k127_3849978_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 2.297e-269 840.0
YYD3_k127_3849978_1 Bacterial transcriptional activator domain - - - 2.32e-213 698.0
YYD3_k127_3849978_10 Glyoxalase-like domain K04750 - - 0.00000000000000000000007236 111.0
YYD3_k127_3849978_11 Cupin 2, conserved barrel domain protein K16953,K19547 - 4.4.1.3,5.3.3.19 0.0000000000000000000187 97.0
YYD3_k127_3849978_12 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000001181 101.0
YYD3_k127_3849978_13 Protein of unknown function (DUF3738) - - - 0.000001013 52.0
YYD3_k127_3849978_2 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005728 406.0
YYD3_k127_3849978_3 Xylose isomerase domain protein TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 392.0
YYD3_k127_3849978_4 Putative esterase K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007544 368.0
YYD3_k127_3849978_5 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000002631 222.0
YYD3_k127_3849978_6 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000002543 220.0
YYD3_k127_3849978_7 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000000209 170.0
YYD3_k127_3849978_8 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000359 167.0
YYD3_k127_3849978_9 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000003758 131.0
YYD3_k127_3932234_0 TIGRFAM oligoendopeptidase, M3 family K08602 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 626.0
YYD3_k127_3932234_1 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007442 429.0
YYD3_k127_3932234_10 Antibiotic biosynthesis monooxygenase - - - 0.000001571 55.0
YYD3_k127_3932234_2 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008231 397.0
YYD3_k127_3932234_3 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 351.0
YYD3_k127_3932234_4 Uncharacterized conserved protein (COG2071) K09166 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000219 260.0
YYD3_k127_3932234_5 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000762 208.0
YYD3_k127_3932234_6 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000288 188.0
YYD3_k127_3932234_7 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000007616 145.0
YYD3_k127_3932234_8 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000005256 138.0
YYD3_k127_3932234_9 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000001323 129.0
YYD3_k127_3983776_0 PFAM tRNA synthetases class II (D, K and N) K01893 - 6.1.1.22 5.767e-224 702.0
YYD3_k127_3983776_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.771e-206 674.0
YYD3_k127_3983776_10 Peptidase M48 K06013 - 3.4.24.84 0.000000000000000000000000000000000000000000000000000000000000000000000000002251 268.0
YYD3_k127_3983776_11 DHH family K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000001835 239.0
YYD3_k127_3983776_12 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000007162 224.0
YYD3_k127_3983776_13 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000000000000000005326 223.0
YYD3_k127_3983776_14 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000734 208.0
YYD3_k127_3983776_15 PFAM peptidase M24 K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000001329 197.0
YYD3_k127_3983776_16 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000424 138.0
YYD3_k127_3983776_17 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000001757 146.0
YYD3_k127_3983776_18 Nucleotidyl transferase K00966,K16881 - 2.7.7.13,5.4.2.8 0.0000000000000000000000000000000008031 144.0
YYD3_k127_3983776_19 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000000000000001559 129.0
YYD3_k127_3983776_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.15 9.045e-204 645.0
YYD3_k127_3983776_20 CYTH K05873 - 4.6.1.1 0.00000000000000000000000000001273 125.0
YYD3_k127_3983776_21 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.0000000000000000000000000008804 118.0
YYD3_k127_3983776_22 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000000002412 116.0
YYD3_k127_3983776_23 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117,K03646 - - 0.0000000000000006749 81.0
YYD3_k127_3983776_24 - - - - 0.0000000000000008726 88.0
YYD3_k127_3983776_25 Protein of unknown function (DUF503) K09764 - - 0.000000000000002482 79.0
YYD3_k127_3983776_26 Cupredoxin-like domain K00376 - 1.7.2.4 0.00000001025 61.0
YYD3_k127_3983776_27 Putative adhesin - - - 0.0003622 52.0
YYD3_k127_3983776_3 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005757 511.0
YYD3_k127_3983776_4 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003392 429.0
YYD3_k127_3983776_5 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 432.0
YYD3_k127_3983776_6 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 442.0
YYD3_k127_3983776_7 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002921 382.0
YYD3_k127_3983776_8 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004841 334.0
YYD3_k127_3983776_9 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009021 312.0
YYD3_k127_4005607_0 Uncharacterised protein family (UPF0182) K09118 - - 4.429e-248 797.0
YYD3_k127_4005607_1 tRNA pseudouridine synthase activity K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000001079 262.0
YYD3_k127_4005607_2 SurA N-terminal domain K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000004083 203.0
YYD3_k127_4005607_3 WYL domain K13572 - - 0.000000000000000000000000000000000000000000004872 176.0
YYD3_k127_4005607_4 Belongs to the HSP15 family K04762 - - 0.0000000000000009321 82.0
YYD3_k127_4009337_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005834 520.0
YYD3_k127_4009337_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002672 499.0
YYD3_k127_4009337_2 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 482.0
YYD3_k127_4009337_3 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 399.0
YYD3_k127_4009337_4 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.000000000000000000000000002268 114.0
YYD3_k127_4009337_5 PFAM Uncharacterised BCR, COG1649 K05988 - 3.2.1.11 0.00000000000000001999 93.0
YYD3_k127_4009337_6 General stress protein K06884 - - 0.000000000000009754 76.0
YYD3_k127_4010203_0 thiolester hydrolase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008181 547.0
YYD3_k127_4010203_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 308.0
YYD3_k127_4010203_2 Homeodomain-like domain - - - 0.00000000000000000000000000000002042 128.0
YYD3_k127_4010203_3 Patatin-like phospholipase K07001 - - 0.000000000000000000000000003242 125.0
YYD3_k127_4010203_4 Alpha beta hydrolase - - - 0.00000005937 54.0
YYD3_k127_403403_0 Tannase and feruloyl esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002408 465.0
YYD3_k127_403403_1 Pyrrolo-quinoline quinone K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 352.0
YYD3_k127_403403_2 Protein of unknown function (DUF3738) K02172 - - 0.00000000000000000000000000000000000001424 158.0
YYD3_k127_403403_3 Protein of unknown function (DUF3738) - - - 0.000000000000000000000000000000000621 139.0
YYD3_k127_4039288_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 594.0
YYD3_k127_4039288_1 DNA topological change K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000002765 262.0
YYD3_k127_4039288_2 O-methyltransferase K00588 - 2.1.1.104 0.0000000000000000000000000000000000000000000000000000000000000000001227 236.0
YYD3_k127_4042503_0 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008709 551.0
YYD3_k127_4042503_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004914 279.0
YYD3_k127_4042503_2 electron transfer activity K00428 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000001698 258.0
YYD3_k127_4042503_3 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000001828 238.0
YYD3_k127_4042503_5 Prolyl oligopeptidase family - - - 0.00000000000000111 90.0
YYD3_k127_4042503_6 Transcriptional regulator - - - 0.00000000000001151 83.0
YYD3_k127_4042503_7 FHA domain - - - 0.000000000001483 76.0
YYD3_k127_4042503_8 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.00000007591 57.0
YYD3_k127_4043440_0 PFAM deoxyhypusine synthase K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 454.0
YYD3_k127_4043440_1 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0000000000000000000000000000000000000000000000000000000003198 207.0
YYD3_k127_4043440_2 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000001888 187.0
YYD3_k127_4043440_3 DinB family - - - 0.0000000000000000000000000000000000000000005105 163.0
YYD3_k127_4043440_4 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.000000000000000000000000008542 124.0
YYD3_k127_4043440_5 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain K07117 - - 0.0000000000000000001564 95.0
YYD3_k127_4043440_6 META domain K03929 - - 0.00000000000000001293 89.0
YYD3_k127_4050669_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 5.09e-234 729.0
YYD3_k127_4050669_1 aspartate-tRNA(Asn) ligase activity K01876 - 6.1.1.12 7.852e-200 638.0
YYD3_k127_4050669_10 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000013 100.0
YYD3_k127_4050669_11 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K01489,K07042 - 3.5.4.5 0.0000000000000000003036 94.0
YYD3_k127_4050669_2 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006207 466.0
YYD3_k127_4050669_3 Acts as a magnesium transporter K03281,K04767,K06213,K15986 GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015693,GO:0030001,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0051179,GO:0051234,GO:0070838,GO:0072511 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 388.0
YYD3_k127_4050669_4 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 392.0
YYD3_k127_4050669_5 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004628 375.0
YYD3_k127_4050669_6 Glycyl-tRNA synthetase alpha K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 364.0
YYD3_k127_4050669_7 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051302,GO:0051781,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:2000104,GO:2000112,GO:2000113 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009272 312.0
YYD3_k127_4050669_8 PFAM CBS domain - - - 0.00000000000000000000000000000000000000000000000000000000002316 222.0
YYD3_k127_4050669_9 dUTPase K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000001035 195.0
YYD3_k127_4051563_0 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000001401 255.0
YYD3_k127_4051563_1 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.0000000000000000000000000000000000000000000000000000007715 220.0
YYD3_k127_4051563_2 lactoylglutathione lyase activity - - - 0.00000003371 58.0
YYD3_k127_4069912_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000245 452.0
YYD3_k127_4069912_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000004753 240.0
YYD3_k127_4069912_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00334,K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000004759 178.0
YYD3_k127_4069912_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.00000000000000000000000000000000000000001669 158.0
YYD3_k127_4069912_4 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 - 1.6.5.3 0.0000000000000000000000000000000000003705 143.0
YYD3_k127_4069912_5 2 iron, 2 sulfur cluster binding K00334,K00335 - 1.6.5.3 0.0000000000000000000000000000000000005029 159.0
YYD3_k127_4076068_0 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006252 333.0
YYD3_k127_4076068_1 Belongs to the MlaE permease family K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000002379 234.0
YYD3_k127_4076068_2 pfam abc K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000008509 234.0
YYD3_k127_4076068_3 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.0000000000000000000000000000000000000000000000000000000000001212 230.0
YYD3_k127_4076068_4 hyperosmotic response - - - 0.0000000000000003356 90.0
YYD3_k127_4076068_5 - - - - 0.00006935 45.0
YYD3_k127_4076068_6 Las17-binding protein actin regulator - - - 0.0002641 50.0
YYD3_k127_4086904_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 3.504e-209 657.0
YYD3_k127_4086904_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 366.0
YYD3_k127_4086904_2 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000419 365.0
YYD3_k127_4086904_3 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008275 344.0
YYD3_k127_4086904_4 Binding-protein-dependent transport system inner membrane component K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 314.0
YYD3_k127_4086904_5 Protein of unknown function DUF47 K02039,K07220 GO:0000287,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006873,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0016020,GO:0016036,GO:0019220,GO:0019222,GO:0019725,GO:0019897,GO:0019898,GO:0022898,GO:0030002,GO:0030145,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031667,GO:0031668,GO:0031669,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032879,GO:0033554,GO:0034605,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043269,GO:0043271,GO:0044070,GO:0044092,GO:0044419,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045936,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051174,GO:0051704,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071467,GO:0071496,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:0104004,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.00000000000000000000000000000000000000000000000000000000000000002067 230.0
YYD3_k127_4086904_6 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000002337 201.0
YYD3_k127_4086904_7 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000004025 60.0
YYD3_k127_4095685_0 Dehydrogenase K00114 - 1.1.2.8 3.65e-196 628.0
YYD3_k127_4095685_1 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007658 272.0
YYD3_k127_4095685_2 Serine aminopeptidase, S33 K01055 - 3.1.1.24 0.00000000000000000000000000000000000006508 153.0
YYD3_k127_4095685_3 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.00000000005635 65.0
YYD3_k127_4104535_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 431.0
YYD3_k127_4104535_1 HupE / UreJ protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004682 383.0
YYD3_k127_4104535_2 COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide 5, 6-dimethylbenzimidazole phosphoribosyltransferase) K09883 - 6.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004161 342.0
YYD3_k127_4104535_3 Belongs to the GPAT DAPAT family - - - 0.0000000000000000000000000000000000000000000000000000000000000002742 232.0
YYD3_k127_4104535_4 - - - - 0.0000000000000000000000000000000000001656 154.0
YYD3_k127_4104535_5 Cysteine-rich CPXCG - - - 0.00000002055 60.0
YYD3_k127_410851_0 MutS domain I K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 1.971e-255 815.0
YYD3_k127_410851_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 409.0
YYD3_k127_410851_2 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.000000000000000000000000000000000000000000000000000000000004974 211.0
YYD3_k127_410851_3 Glycoprotease family K01409,K14742 - 2.3.1.234 0.000000000000000000000000000001184 131.0
YYD3_k127_410851_4 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.000000000000000000000000000002921 134.0
YYD3_k127_410851_5 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.00000000000000000000002731 101.0
YYD3_k127_410851_6 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 4.1.1.65 0.00000000001082 68.0
YYD3_k127_410851_7 Protein of unknown function (DUF465) - - - 0.0000002636 56.0
YYD3_k127_410851_8 Tetratricopeptide repeat - - - 0.000005074 57.0
YYD3_k127_410851_9 - - - - 0.0001348 45.0
YYD3_k127_410965_0 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 509.0
YYD3_k127_410965_1 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 388.0
YYD3_k127_410965_10 PBS lyase HEAT domain protein repeat-containing protein - - - 0.000000000000000000345 94.0
YYD3_k127_410965_11 histidine kinase A domain protein domain protein - - - 0.000000000000000002155 101.0
YYD3_k127_410965_12 - - - - 0.00000000000000002749 90.0
YYD3_k127_410965_13 - - - - 0.00000000000004172 82.0
YYD3_k127_410965_14 Outer membrane protein, OMP85 family K07277 - - 0.000000006001 68.0
YYD3_k127_410965_15 Domain of unknown function (DUF4136) - - - 0.000002466 57.0
YYD3_k127_410965_2 TLC ATP/ADP transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 310.0
YYD3_k127_410965_3 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005194 254.0
YYD3_k127_410965_4 Domain of unknown function (DUF3943) - - - 0.00000000000000000000000000000000000000000000000000000000004801 222.0
YYD3_k127_410965_5 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000001044 211.0
YYD3_k127_410965_7 - - - - 0.000000000000000000000000000003812 139.0
YYD3_k127_410965_8 Periplasmic or secreted lipoprotein - - - 0.000000000000000000000000000003889 130.0
YYD3_k127_410965_9 dicarboxylic acid transport K02030,K11102 - - 0.0000000000000000000000001731 109.0
YYD3_k127_4111162_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001342 253.0
YYD3_k127_4111162_1 PFAM BadF BadG BcrA BcrD ATPase family K00884,K02616 - 2.7.1.59 0.00000000000000000000007097 102.0
YYD3_k127_4111162_2 PFAM Uncharacterised BCR, COG1649 - - - 0.00000000000003236 85.0
YYD3_k127_4111162_3 general secretion pathway protein K02456,K02650 - - 0.0000000000000341 85.0
YYD3_k127_4111162_4 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000103 71.0
YYD3_k127_4113328_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000481 514.0
YYD3_k127_4113328_1 COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 339.0
YYD3_k127_4113328_11 - - - - 0.000000000000002593 88.0
YYD3_k127_4113328_12 Branched-chain amino acid ATP-binding cassette transporter - - - 0.000000000008635 67.0
YYD3_k127_4113328_13 - - - - 0.0000000006594 68.0
YYD3_k127_4113328_14 Acetyltransferase (GNAT) domain - - - 0.0000001528 55.0
YYD3_k127_4113328_15 - - - - 0.000003916 59.0
YYD3_k127_4113328_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001308 298.0
YYD3_k127_4113328_3 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002683 279.0
YYD3_k127_4113328_4 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001271 288.0
YYD3_k127_4113328_5 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006797 256.0
YYD3_k127_4113328_6 DNA-templated transcription, initiation K03088,K07263 - - 0.0000000000000000000000000000000000000003817 157.0
YYD3_k127_4113328_7 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000008732 136.0
YYD3_k127_4113328_8 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000009346 147.0
YYD3_k127_4113328_9 Calcium/calmodulin dependent protein kinase II association domain - - - 0.00000000000000000000000000000006031 137.0
YYD3_k127_41239_1 FR47-like protein - - - 0.000000004788 59.0
YYD3_k127_4135420_0 glucose sorbosone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 357.0
YYD3_k127_4135420_1 Patatin-like phospholipase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 325.0
YYD3_k127_4135420_2 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008719 283.0
YYD3_k127_4135420_3 Putative sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009624 287.0
YYD3_k127_4135420_4 PFAM band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004717 265.0
YYD3_k127_4135420_6 PadR family transcriptional regulator K10947 - - 0.00000000000000000000000000000000008749 136.0
YYD3_k127_4135420_7 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.000000000000000008983 88.0
YYD3_k127_4135420_8 Patatin-like phospholipase K07001 - - 0.000000000003179 78.0
YYD3_k127_4135420_9 determination of stomach left/right asymmetry K10407 - - 0.00000000001235 76.0
YYD3_k127_4144416_0 ABC transporter transmembrane region K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007049 332.0
YYD3_k127_4144416_1 dTDP biosynthetic process K00560,K00943,K01585 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004798,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009129,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009161,GO:0009165,GO:0009173,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019001,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046044,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046872,GO:0046940,GO:0046983,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.1.1.45,2.7.4.9,4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003396 302.0
YYD3_k127_4144416_2 dTDP biosynthetic process K00943,K01585 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004798,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009129,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009161,GO:0009165,GO:0009173,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019001,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046044,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046872,GO:0046940,GO:0046983,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.4.9,4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000007471 266.0
YYD3_k127_4144416_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001246 265.0
YYD3_k127_414495_0 - - - - 4.785e-292 914.0
YYD3_k127_414495_1 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 547.0
YYD3_k127_414495_10 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000005396 271.0
YYD3_k127_414495_11 ATPase activity K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002418 249.0
YYD3_k127_414495_12 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000001718 238.0
YYD3_k127_414495_13 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000003371 228.0
YYD3_k127_414495_14 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000177 234.0
YYD3_k127_414495_15 Copper binding periplasmic protein CusF K07152 - - 0.0000000000000000000000000000000000000000000000000001647 196.0
YYD3_k127_414495_16 - - - - 0.00000000000000000000000000000000000000000006572 169.0
YYD3_k127_414495_17 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000005972 150.0
YYD3_k127_414495_18 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000844 158.0
YYD3_k127_414495_19 4Fe-4S dicluster domain K05524 - - 0.0000000000000000000000000000000000009482 143.0
YYD3_k127_414495_2 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 545.0
YYD3_k127_414495_20 GAF domain - - - 0.000000000000000000000000000000000005623 156.0
YYD3_k127_414495_21 Lipase (class 3) K01046 - 3.1.1.3 0.00000000000000000000000000000000004646 147.0
YYD3_k127_414495_22 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000001254 150.0
YYD3_k127_414495_23 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000002266 149.0
YYD3_k127_414495_24 cell redox homeostasis K02199 - - 0.000000000000000000000000000003499 131.0
YYD3_k127_414495_25 - - - - 0.0000000000000000000000000003059 126.0
YYD3_k127_414495_26 - - - - 0.000000000000000000002222 99.0
YYD3_k127_414495_27 - - - - 0.000000000000002085 89.0
YYD3_k127_414495_28 - - - - 0.00000000000006698 75.0
YYD3_k127_414495_29 cytochrome c - - - 0.0000000000006958 75.0
YYD3_k127_414495_3 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 492.0
YYD3_k127_414495_30 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000002031 71.0
YYD3_k127_414495_31 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00001816 57.0
YYD3_k127_414495_32 gag-polyprotein putative aspartyl protease - - - 0.00004871 56.0
YYD3_k127_414495_33 Putative zinc-finger - - - 0.0000595 53.0
YYD3_k127_414495_4 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004712 438.0
YYD3_k127_414495_5 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003149 377.0
YYD3_k127_414495_6 Response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 382.0
YYD3_k127_414495_7 InterPro IPR010496 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008893 321.0
YYD3_k127_414495_8 poly(3-hydroxybutyrate) depolymerase activity K07019 GO:0003674,GO:0003824,GO:0006629,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0044237,GO:0044238,GO:0044255,GO:0071704 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 295.0
YYD3_k127_414495_9 Belongs to the UPF0173 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001046 283.0
YYD3_k127_415705_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1175.0
YYD3_k127_415705_1 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 334.0
YYD3_k127_415705_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000008892 83.0
YYD3_k127_415705_11 Zinc-dependent metalloprotease - - - 0.00000002886 65.0
YYD3_k127_415705_12 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000006821 57.0
YYD3_k127_415705_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009336 312.0
YYD3_k127_415705_3 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006091,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009055,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0022900,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 311.0
YYD3_k127_415705_4 PFAM peptidase M16 domain protein K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 300.0
YYD3_k127_415705_5 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003499 292.0
YYD3_k127_415705_6 S1 P1 Nuclease - - - 0.00000000000000000000000000000000000003382 154.0
YYD3_k127_415705_7 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000005993 87.0
YYD3_k127_415705_8 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000005108 87.0
YYD3_k127_415705_9 - - - - 0.00000000000005355 79.0
YYD3_k127_417771_0 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 4.794e-294 911.0
YYD3_k127_417771_1 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005829 397.0
YYD3_k127_417771_2 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 351.0
YYD3_k127_4203708_0 amine dehydrogenase activity - - - 1.846e-246 798.0
YYD3_k127_4203708_1 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008392 307.0
YYD3_k127_4203708_10 - - - - 0.000000001333 68.0
YYD3_k127_4203708_11 - - - - 0.00000002378 64.0
YYD3_k127_4203708_12 STAS domain K06378 - - 0.000002213 55.0
YYD3_k127_4203708_13 - - - - 0.000002322 53.0
YYD3_k127_4203708_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000002508 239.0
YYD3_k127_4203708_3 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000002002 216.0
YYD3_k127_4203708_4 - - - - 0.00000000000000000000000000000000000001698 156.0
YYD3_k127_4203708_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000001416 130.0
YYD3_k127_4203708_6 Protease prsW family - - - 0.0000000000000000000000000004093 126.0
YYD3_k127_4203708_7 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000005906 117.0
YYD3_k127_4203708_8 Domain of unknown function (DUF1330) - - - 0.0000000000004392 73.0
YYD3_k127_4203708_9 oxidative phosphorylation K00426 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016679,GO:0016682,GO:0019646,GO:0020037,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0070069,GO:0071944,GO:0097159,GO:1901363 1.10.3.14 0.0000000003113 69.0
YYD3_k127_4213483_0 ASPIC and UnbV - - - 7.2e-268 869.0
YYD3_k127_4213483_1 Animal haem peroxidase - - - 6.682e-213 677.0
YYD3_k127_4213483_10 NADH flavin oxidoreductase NADH oxidase K00317 - 1.5.8.1,1.5.8.2 0.000001773 51.0
YYD3_k127_4213483_2 PQQ-like domain K05889 - 1.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 528.0
YYD3_k127_4213483_3 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008427 391.0
YYD3_k127_4213483_4 Copper binding periplasmic protein CusF K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001613 266.0
YYD3_k127_4213483_5 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001149 258.0
YYD3_k127_4213483_6 COG3227 Zinc metalloprotease (elastase) K01400 GO:0005575,GO:0005576 3.4.24.28 0.00000000000000000000000000000000000000000000000000000000000000000002828 256.0
YYD3_k127_4213483_7 lactoylglutathione lyase activity K03088 - - 0.000000000000000000000000000000000000000000000000000000000002041 218.0
YYD3_k127_4213483_9 nuclear chromosome segregation - - - 0.0000000005866 63.0
YYD3_k127_4218264_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 596.0
YYD3_k127_4218264_1 Belongs to the amidase family K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002463 522.0
YYD3_k127_4218264_10 Two component transcriptional regulator, winged helix family K02483 - - 0.00000000000000000000000000000000000000000000000000000002689 207.0
YYD3_k127_4218264_11 Protein of unknown function (DUF520) K09767 - - 0.000000000000000000000000000000000000000000000000001074 187.0
YYD3_k127_4218264_12 solute binding protein K02035 - - 0.00002377 55.0
YYD3_k127_4218264_2 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 503.0
YYD3_k127_4218264_3 Belongs to the glutaminase family K01425 - 3.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 453.0
YYD3_k127_4218264_4 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004232 453.0
YYD3_k127_4218264_5 serine-type peptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007064 413.0
YYD3_k127_4218264_6 TIGRFAM drug resistance transporter, EmrB QacA subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 386.0
YYD3_k127_4218264_7 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 353.0
YYD3_k127_4218264_8 Protein of unknown function (DUF1722) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405 333.0
YYD3_k127_4218264_9 histidine kinase HAMP region domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000002745 231.0
YYD3_k127_4244460_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000119 298.0
YYD3_k127_4244460_1 - - - - 0.000000000000000000000000000000000000000000000000000000000002712 214.0
YYD3_k127_4244460_2 Adenylate cyclase - - - 0.000000000000001522 91.0
YYD3_k127_4316980_0 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 410.0
YYD3_k127_4316980_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859 371.0
YYD3_k127_4316980_2 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008719 279.0
YYD3_k127_4316980_3 AcrB/AcrD/AcrF family - - - 0.000000000000000000000000000000000000000000000000000000000000000000009378 241.0
YYD3_k127_4316980_4 - - - - 0.000000000000000000000000000000000000000000008542 168.0
YYD3_k127_4316980_5 Protein of unknown function (DUF1552) - - - 0.000000000000000000000000000000018 129.0
YYD3_k127_4316980_6 domain, Protein - - - 0.0001095 50.0
YYD3_k127_4323348_0 signal-transduction protein containing cAMP-binding and CBS domains K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000001782 237.0
YYD3_k127_4323348_1 RNA secondary structure unwinding K03724 - - 0.00000000000000004277 88.0
YYD3_k127_4323348_2 response regulator receiver K13599 - - 0.000000001775 61.0
YYD3_k127_4330583_0 PFAM DGPFAETKE family protein - - - 0.000000000000000000000000000000000000000000003958 165.0
YYD3_k127_4330583_1 Na H antiporter K05559 - - 0.000000000002419 70.0
YYD3_k127_4348406_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0 1055.0
YYD3_k127_4348406_1 B12 binding domain - - - 1.711e-237 744.0
YYD3_k127_4348406_10 peptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009103 371.0
YYD3_k127_4348406_11 mitochondrial gene expression - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 370.0
YYD3_k127_4348406_12 esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005089 357.0
YYD3_k127_4348406_13 Putative cyclase K07130 GO:0003674,GO:0003824,GO:0004061,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019439,GO:0019441,GO:0019752,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 323.0
YYD3_k127_4348406_14 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002072 328.0
YYD3_k127_4348406_15 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008772 287.0
YYD3_k127_4348406_16 Alkaline phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002759 297.0
YYD3_k127_4348406_17 PFAM alpha beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000002296 237.0
YYD3_k127_4348406_18 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000002646 235.0
YYD3_k127_4348406_19 YaeQ - - - 0.0000000000000000000000000000000000000000000000000000000000005426 215.0
YYD3_k127_4348406_2 Peptidase family M28 - - - 2.362e-212 674.0
YYD3_k127_4348406_20 PFAM ATPase associated with various cellular activities AAA_3 - - - 0.00000000000000000000000000000000000000000000000000000000002941 220.0
YYD3_k127_4348406_21 to glycosidase Bacteriophage 11b gi 53748214 emb CAH56675.1 K03791 - - 0.0000000000000000000000000000000000000000000000000002273 194.0
YYD3_k127_4348406_22 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000005226 184.0
YYD3_k127_4348406_23 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000003397 199.0
YYD3_k127_4348406_25 Maleate cis-trans isomerase - - - 0.000000000000000000000000000000000000000000003397 183.0
YYD3_k127_4348406_26 Alpha beta hydrolase fold-3 domain protein - - - 0.00000000000000000000000000000000000003134 149.0
YYD3_k127_4348406_27 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000001499 146.0
YYD3_k127_4348406_28 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000001108 138.0
YYD3_k127_4348406_29 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.00000000000000000000000000003475 137.0
YYD3_k127_4348406_3 transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 612.0
YYD3_k127_4348406_30 - - - - 0.000000000000000000000003046 114.0
YYD3_k127_4348406_31 Translation initiation factor SUI1 K03113 - - 0.00000000000000000002099 103.0
YYD3_k127_4348406_32 - - - - 0.0000000003606 69.0
YYD3_k127_4348406_33 - - - - 0.0001205 55.0
YYD3_k127_4348406_4 SMP-30/Gluconolaconase/LRE-like region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006764 527.0
YYD3_k127_4348406_5 COG2133 Glucose sorbosone dehydrogenases K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002134 505.0
YYD3_k127_4348406_6 Mo-co oxidoreductase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 473.0
YYD3_k127_4348406_7 - K13582,K13924,K15580 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003343 445.0
YYD3_k127_4348406_8 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003626 406.0
YYD3_k127_4348406_9 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 376.0
YYD3_k127_4359955_0 Heat shock 70 kDa protein K04043 - - 2.81e-296 919.0
YYD3_k127_4359955_1 PQQ-like domain K05889 - 1.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007591 548.0
YYD3_k127_4359955_10 CarboxypepD_reg-like domain - - - 0.0000000000000000003009 103.0
YYD3_k127_4359955_11 2OG-Fe(II) oxygenase superfamily K15429 - 2.1.1.228 0.0000000047 68.0
YYD3_k127_4359955_12 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000004339 63.0
YYD3_k127_4359955_13 haloacid dehalogenase-like hydrolase - - - 0.0001736 53.0
YYD3_k127_4359955_14 - - - - 0.0002372 48.0
YYD3_k127_4359955_2 arylsulfatase activity K01132 - 3.1.6.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 520.0
YYD3_k127_4359955_3 Trehalose utilisation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 407.0
YYD3_k127_4359955_4 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008272 396.0
YYD3_k127_4359955_5 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000004248 168.0
YYD3_k127_4359955_6 - - - - 0.00000000000000000000000000000000000000001514 166.0
YYD3_k127_4359955_7 SMP-30/Gluconolaconase/LRE-like region - - - 0.00000000000000000000000000000000000003529 157.0
YYD3_k127_4359955_8 Trehalose utilisation - - - 0.00000000000000000000000000000000004224 149.0
YYD3_k127_4359955_9 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000003097 130.0
YYD3_k127_4369635_0 PFAM Uncharacterised conserved protein UCP016719 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006788 390.0
YYD3_k127_4369635_1 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 385.0
YYD3_k127_4369635_2 Belongs to the pyruvate kinase family K00873 GO:0001871,GO:0003674,GO:0003824,GO:0004743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006116,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0030246,GO:0030247,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:2001065 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 368.0
YYD3_k127_4369635_3 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 331.0
YYD3_k127_4369635_4 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000026 253.0
YYD3_k127_4369635_5 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000153 96.0
YYD3_k127_4373124_0 Deoxyhypusine synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 394.0
YYD3_k127_4373124_1 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 403.0
YYD3_k127_4373124_10 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.00000000000000000000000000000000000005015 159.0
YYD3_k127_4373124_11 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000000000000000000003965 139.0
YYD3_k127_4373124_12 Regulates arginine biosynthesis genes K03402 - - 0.0000000000000000000000002141 113.0
YYD3_k127_4373124_13 - - - - 0.00000000000000005713 91.0
YYD3_k127_4373124_14 PFAM Acetyltransferase (GNAT) family K00619 - 2.3.1.1 0.000000001066 67.0
YYD3_k127_4373124_15 - - - - 0.0000001367 62.0
YYD3_k127_4373124_2 belongs to the lyase 1 family. Argininosuccinate lyase subfamily K01755,K14681 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171 393.0
YYD3_k127_4373124_3 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007568 349.0
YYD3_k127_4373124_4 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 292.0
YYD3_k127_4373124_5 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 GO:0003674,GO:0003824,GO:0003942,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002952 281.0
YYD3_k127_4373124_6 Sigma-54 factor interaction domain-containing protein K02481,K07712,K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002647 275.0
YYD3_k127_4373124_7 peptidase S8 and S53, subtilisin, kexin, sedolisin K17734 - - 0.000000000000000000000000000000000000000000000000000000000000000002686 250.0
YYD3_k127_4373124_8 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.000000000000000000000000000000000000000000000000000000000000000007677 239.0
YYD3_k127_4373124_9 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000004455 231.0
YYD3_k127_4404949_0 epoxide hydrolase - - - 1.955e-219 688.0
YYD3_k127_4404949_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004179 329.0
YYD3_k127_4404949_2 - - - - 0.00000000000000000000002263 103.0
YYD3_k127_4404949_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000001602 51.0
YYD3_k127_4406264_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009256 367.0
YYD3_k127_4406264_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009549 269.0
YYD3_k127_4406264_2 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000003563 210.0
YYD3_k127_4406264_3 negative regulation of transcription, DNA-templated K10947 - - 0.0009684 46.0
YYD3_k127_4409401_0 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000003064 185.0
YYD3_k127_4409401_1 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.00000000000000000000000000003554 126.0
YYD3_k127_4409401_2 von Willebrand factor, type A - - - 0.0000000000001431 74.0
YYD3_k127_4414457_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 427.0
YYD3_k127_4414457_1 TonB-dependent receptor - - - 0.00000000000000000000000000000000005597 151.0
YYD3_k127_4453789_0 Methionine synthase K00548 - 2.1.1.13 0.0 1225.0
YYD3_k127_4453789_1 ABC transporter transmembrane region K11085 - - 1.649e-253 796.0
YYD3_k127_4453789_10 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000004427 250.0
YYD3_k127_4453789_11 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000967 263.0
YYD3_k127_4453789_12 Protein of Unknown function (DUF2784) - - - 0.0000000000000000000000000000000000000000002083 162.0
YYD3_k127_4453789_13 ApaG domain K06195 - - 0.000000000000000000000000000000000000000004092 158.0
YYD3_k127_4453789_14 DinB family - - - 0.000000000000000000000000000000000001679 144.0
YYD3_k127_4453789_15 oxidation-reduction process - - - 0.00000000000000000000000000000000001858 141.0
YYD3_k127_4453789_16 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000000001728 106.0
YYD3_k127_4453789_17 Sigma-70 region 2 K03088 - - 0.0000000000006599 77.0
YYD3_k127_4453789_18 SnoaL-like polyketide cyclase - - - 0.000000000005337 72.0
YYD3_k127_4453789_19 Protein of unknown function (DUF533) - - - 0.0000002063 63.0
YYD3_k127_4453789_2 Belongs to the UbiD family K03182,K16239 - 4.1.1.61,4.1.1.98 3.227e-232 732.0
YYD3_k127_4453789_20 Acetyltransferase (GNAT) family - - - 0.00004623 53.0
YYD3_k127_4453789_3 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000948 470.0
YYD3_k127_4453789_4 Male sterility protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006104 447.0
YYD3_k127_4453789_5 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002853 426.0
YYD3_k127_4453789_6 Mitochondrial biogenesis AIM24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 411.0
YYD3_k127_4453789_7 metal-dependent hydrolase with the TIM-barrel fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 327.0
YYD3_k127_4453789_8 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002097 293.0
YYD3_k127_4453789_9 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000009345 258.0
YYD3_k127_4456644_0 protein kinase activity K08884 - 2.7.11.1 0.00000000000000000000000000000000000000004259 162.0
YYD3_k127_4456644_1 - - - - 0.0000000000000000000000000000000000000006553 158.0
YYD3_k127_4456644_2 - - - - 0.000000000000000002255 92.0
YYD3_k127_4456644_3 guanyl-nucleotide exchange factor activity - - - 0.00004178 57.0
YYD3_k127_4493269_0 PFAM Integrase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 299.0
YYD3_k127_4523606_0 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000003488 230.0
YYD3_k127_4523606_1 - - - - 0.0000000000000002247 91.0
YYD3_k127_4587880_0 metallocarboxypeptidase activity K14054 - - 2.39e-231 726.0
YYD3_k127_4587880_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.069e-207 668.0
YYD3_k127_4587880_10 TonB-dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 349.0
YYD3_k127_4587880_11 response regulator, receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 308.0
YYD3_k127_4587880_12 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 301.0
YYD3_k127_4587880_13 Belongs to the peptidase M48B family K03799 GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0016020,GO:0016021,GO:0016787,GO:0019538,GO:0031224,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044425,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008484 300.0
YYD3_k127_4587880_14 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000008963 246.0
YYD3_k127_4587880_15 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000002242 242.0
YYD3_k127_4587880_16 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000006594 181.0
YYD3_k127_4587880_17 - - - - 0.0000000000000000000000000000000000000000000007058 181.0
YYD3_k127_4587880_18 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000003714 160.0
YYD3_k127_4587880_19 Chromate transporter K07240 - - 0.00000000000000000000000000000000001119 140.0
YYD3_k127_4587880_2 MatE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 596.0
YYD3_k127_4587880_20 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000005586 97.0
YYD3_k127_4587880_21 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000003604 96.0
YYD3_k127_4587880_22 Chromate transporter K07240 - - 0.000000000000000948 89.0
YYD3_k127_4587880_24 23S rRNA-intervening sequence protein - - - 0.000000000005857 70.0
YYD3_k127_4587880_25 23S rRNA-intervening sequence protein - - - 0.000000001815 68.0
YYD3_k127_4587880_26 oxidoreductase activity - - - 0.000000003072 71.0
YYD3_k127_4587880_27 Putative zinc- or iron-chelating domain K18475 - - 0.0000002418 63.0
YYD3_k127_4587880_28 polysaccharide catabolic process - - - 0.0007324 51.0
YYD3_k127_4587880_3 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 565.0
YYD3_k127_4587880_4 alkaline phosphatase K01113 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004246 487.0
YYD3_k127_4587880_5 LOR/SDH bifunctional enzyme conserved region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 460.0
YYD3_k127_4587880_6 PFAM Fatty acid desaturase K00507 - 1.14.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002764 404.0
YYD3_k127_4587880_7 aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004044 386.0
YYD3_k127_4587880_8 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 365.0
YYD3_k127_4587880_9 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 342.0
YYD3_k127_4590721_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.477e-301 947.0
YYD3_k127_4590721_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.38e-251 789.0
YYD3_k127_4590721_10 Cellulose biosynthesis protein BcsQ K03496 GO:0008150,GO:0022603,GO:0042173,GO:0042174,GO:0043937,GO:0043939,GO:0045595,GO:0045596,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0065007 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003483 293.0
YYD3_k127_4590721_11 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 GO:0002790,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022607,GO:0031224,GO:0031226,GO:0032940,GO:0032977,GO:0033036,GO:0034613,GO:0042886,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051205,GO:0051234,GO:0051259,GO:0051260,GO:0051641,GO:0061024,GO:0065003,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0090150 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001732 301.0
YYD3_k127_4590721_12 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005585 286.0
YYD3_k127_4590721_13 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008708 260.0
YYD3_k127_4590721_14 ParB-like nuclease domain K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001166 248.0
YYD3_k127_4590721_15 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000001089 100.0
YYD3_k127_4590721_16 R3H domain protein K06346 - - 0.00000000000000000003374 96.0
YYD3_k127_4590721_17 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000001289 96.0
YYD3_k127_4590721_18 Specifically methylates the N7 position of guanine in position 535 of 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.0000000000000000002944 97.0
YYD3_k127_4590721_19 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000007335 76.0
YYD3_k127_4590721_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 4.172e-237 743.0
YYD3_k127_4590721_20 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000104 70.0
YYD3_k127_4590721_3 PFAM UvrD REP helicase K03657 - 3.6.4.12 1.175e-199 646.0
YYD3_k127_4590721_4 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000284 624.0
YYD3_k127_4590721_5 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008121 548.0
YYD3_k127_4590721_6 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010556,GO:0016020,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1990837,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 484.0
YYD3_k127_4590721_7 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 445.0
YYD3_k127_4590721_8 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 439.0
YYD3_k127_4590721_9 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 332.0
YYD3_k127_4603949_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 459.0
YYD3_k127_4603949_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006394 268.0
YYD3_k127_4603949_2 PFAM Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002349 280.0
YYD3_k127_4603949_3 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000661 160.0
YYD3_k127_4603949_4 Carboxypeptidase regulatory-like domain - - - 0.000000000000000001001 96.0
YYD3_k127_4603949_6 tRNA cytidylyltransferase activity - - - 0.000000001451 66.0
YYD3_k127_4603949_7 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.000000003998 60.0
YYD3_k127_4619186_0 phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 477.0
YYD3_k127_4625938_0 Belongs to the DegT DnrJ EryC1 family K02805 - 2.6.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 503.0
YYD3_k127_4625938_1 Glycosyl transferase family 2 K13670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 331.0
YYD3_k127_4625938_10 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000007016 112.0
YYD3_k127_4625938_11 UDP-N-acetylglucosamine 2-epimerase activity - - - 0.0000005507 63.0
YYD3_k127_4625938_12 Methyltransferase - - - 0.0003256 53.0
YYD3_k127_4625938_13 - K14340 - - 0.0003434 53.0
YYD3_k127_4625938_2 beta-fructofuranosidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 303.0
YYD3_k127_4625938_3 WbqC-like protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003709 270.0
YYD3_k127_4625938_4 Hexapeptide repeat of succinyl-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001673 267.0
YYD3_k127_4625938_5 ABC transporter K01990,K09689,K09691 - 3.6.3.38 0.000000000000000000000000000000000000000000000000000000000000000000000000001128 269.0
YYD3_k127_4625938_6 Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin - - - 0.000000000000000000000000000000000000000000000000000000000000000000001223 245.0
YYD3_k127_4625938_7 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000007865 206.0
YYD3_k127_4625938_8 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000002368 203.0
YYD3_k127_4625938_9 ABC-2 type transporter K09690 - - 0.000000000000000000000000000000000000000000000257 183.0
YYD3_k127_4641473_0 Type VI secretion protein K11896 - - 1.622e-255 803.0
YYD3_k127_4641473_1 type VI secretion protein K11900 - - 1.058e-224 696.0
YYD3_k127_4641473_2 Virulence protein SciE type K11898 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005307 362.0
YYD3_k127_4641473_3 Type VI secretion system effector, Hcp K11903 - - 0.000000000000000000000000000000000000000000000000000000000000000257 223.0
YYD3_k127_4641473_4 TIGRFAM type VI secretion system lysozyme-related protein K11897 - - 0.0000000000000000000000000000000000000000000000000006925 189.0
YYD3_k127_4641473_5 Type VI secretion system effector, Hcp K11903 - - 0.0000000000000000000000000000000000000000000000001938 185.0
YYD3_k127_4641473_6 Pfam:T6SS_VasB K11895 - - 0.0000000000000000000000000000000000000000007984 161.0
YYD3_k127_4658216_0 MacB-like periplasmic core domain - - - 1.143e-268 857.0
YYD3_k127_4658216_1 TonB dependent receptor - - - 3.267e-217 698.0
YYD3_k127_4658216_2 MacB-like periplasmic core domain - - - 4.282e-196 647.0
YYD3_k127_4658216_3 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 334.0
YYD3_k127_4658216_4 Protein of unknown function (DUF1207) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 316.0
YYD3_k127_4658216_5 Protein of unknown function (DUF2975) - - - 0.000000000000000000000000000000000000000000000006518 178.0
YYD3_k127_4658216_6 - - - - 0.00000000000000000000000000000000000000000003915 164.0
YYD3_k127_4658216_7 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000000835 141.0
YYD3_k127_4658216_8 Transcriptional regulator K07727 - - 0.0000000000000000000000000165 115.0
YYD3_k127_4658216_9 Protein tyrosine kinase - - - 0.000000000000003777 75.0
YYD3_k127_4660954_0 PFAM TonB-dependent Receptor Plug Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 522.0
YYD3_k127_4660954_1 PFAM TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006973 478.0
YYD3_k127_4660954_2 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002934 283.0
YYD3_k127_4660954_3 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000001958 242.0
YYD3_k127_4661132_0 Las17-binding protein actin regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005415 333.0
YYD3_k127_4661132_1 CsbD-like - - - 0.0000006255 53.0
YYD3_k127_4661913_0 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000005546 246.0
YYD3_k127_4670461_0 PFAM Mechanosensitive ion channel K03442 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 348.0
YYD3_k127_4670461_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000003579 206.0
YYD3_k127_4670461_2 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000000000000005928 182.0
YYD3_k127_4670461_3 serine threonine protein kinase - - - 0.0000000005003 73.0
YYD3_k127_4670461_4 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.0000000161 61.0
YYD3_k127_4670461_5 Serine threonine protein kinase - - - 0.00000005551 66.0
YYD3_k127_4670461_6 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.000001469 53.0
YYD3_k127_4670461_7 - - - - 0.000003043 49.0
YYD3_k127_4674429_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 1.256e-196 636.0
YYD3_k127_4674429_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000941 608.0
YYD3_k127_4674429_2 Protein of unknown function DUF111 K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 368.0
YYD3_k127_4674429_3 Belongs to the FPP GGPP synthase family K02523,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29,2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008568 289.0
YYD3_k127_4674429_4 TatD related DNase K03424 GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000009282 233.0
YYD3_k127_4674429_5 RadC-like JAB domain K03630 - - 0.0000000000000000000000000000000000000000000000000008802 191.0
YYD3_k127_4674429_6 D-Tyr-tRNA(Tyr) deacylase K07560 - - 0.0000000000000000000000000000000000000000000000005459 179.0
YYD3_k127_4674429_7 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000006112 192.0
YYD3_k127_4674429_8 - - - - 0.00000000000003207 83.0
YYD3_k127_4674429_9 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000001994 54.0
YYD3_k127_4689095_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 4.367e-319 990.0
YYD3_k127_4689095_1 amino acid K03294 - - 2.695e-200 635.0
YYD3_k127_4689095_10 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000006389 218.0
YYD3_k127_4689095_11 Low affinity iron permease - - - 0.00000000000000000000000000000000000000000001163 166.0
YYD3_k127_4689095_12 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000001165 172.0
YYD3_k127_4689095_13 Rieske [2Fe-2S] domain K03886 - - 0.000000000000000000000000001787 117.0
YYD3_k127_4689095_14 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000004284 83.0
YYD3_k127_4689095_15 cell wall anchor domain - - - 0.000000000007904 78.0
YYD3_k127_4689095_2 FAD linked oxidases, C-terminal domain K00102,K00104 GO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009441,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0017144,GO:0019154,GO:0019752,GO:0032787,GO:0033554,GO:0034308,GO:0034310,GO:0042737,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046164,GO:0046296,GO:0046395,GO:0050896,GO:0051716,GO:0055114,GO:0071704,GO:0072329,GO:1901575,GO:1901615,GO:1901616 1.1.2.4,1.1.3.15 2.465e-194 617.0
YYD3_k127_4689095_3 AMP-binding enzyme C-terminal domain K00666,K01897,K18660 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003838 587.0
YYD3_k127_4689095_4 L-lactate permease K03303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005031 575.0
YYD3_k127_4689095_5 Domain of unknown function (DUF2088) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009152 491.0
YYD3_k127_4689095_6 Cysteine-rich domain K11473 GO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009441,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0017144,GO:0019154,GO:0019752,GO:0032787,GO:0034308,GO:0034310,GO:0042737,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046164,GO:0046296,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575,GO:1901615,GO:1901616 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 461.0
YYD3_k127_4689095_7 Cytochrome b(C-terminal)/b6/petD K00412 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 411.0
YYD3_k127_4689095_8 FAD linked oxidases, C-terminal domain K11472 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009096 263.0
YYD3_k127_4689095_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000295 224.0
YYD3_k127_4744755_0 Dehydrogenase K00114 - 1.1.2.8 6.181e-215 679.0
YYD3_k127_4744755_1 Dehydrogenase K02030,K17760,K19713 - 1.1.9.1,1.8.2.2 0.00000000000004722 84.0
YYD3_k127_4744755_2 Anti-sigma-K factor rskA - - - 0.000005741 58.0
YYD3_k127_4744755_3 protein kinase activity - - - 0.00001923 57.0
YYD3_k127_4795528_0 PLD-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000002791 226.0
YYD3_k127_4795528_1 phosphate-selective porin O and P K07221 - - 0.000000000000000000000000000006031 132.0
YYD3_k127_4795528_2 Domain of unknown function (DUF4956) - - - 0.00000000000003078 85.0
YYD3_k127_4795528_3 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.000001416 61.0
YYD3_k127_481429_0 Periplasmic protease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 329.0
YYD3_k127_4819959_0 Glycogen debranching enzyme - - - 2e-323 995.0
YYD3_k127_4819959_1 Patatin-like phospholipase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008498 528.0
YYD3_k127_4819959_11 - - - - 0.0000259 53.0
YYD3_k127_4819959_12 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0008193 51.0
YYD3_k127_4819959_3 sirohydrochlorin cobaltochelatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 298.0
YYD3_k127_4819959_4 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000103 277.0
YYD3_k127_4819959_5 translation initiation factor activity K06996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001118 250.0
YYD3_k127_4819959_6 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000000000000000000000000000000000000000000000000000001218 210.0
YYD3_k127_4819959_7 Peptidase MA superfamily - - - 0.000000000000000000000000000000007036 141.0
YYD3_k127_4819959_9 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000008875 100.0
YYD3_k127_4880369_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 1.339e-260 811.0
YYD3_k127_4880369_1 COG0457 FOG TPR repeat - - - 3.675e-229 717.0
YYD3_k127_4880369_2 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 6.337e-226 717.0
YYD3_k127_4880369_3 COG1943 Transposase and inactivated derivatives K07491 - - 0.0000000000000000000000000000000000000000000000000000008951 199.0
YYD3_k127_4880369_4 - - - - 0.00000000000000000000000000000000000000000000000008556 181.0
YYD3_k127_4880369_5 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.0000000000000000000000000000000000000000000006033 171.0
YYD3_k127_4880369_6 - - - - 0.00000000000001519 80.0
YYD3_k127_4880369_7 peptidyl-tyrosine sulfation - - - 0.00000000005276 76.0
YYD3_k127_4880369_8 ribosomal - - - 0.000122 53.0
YYD3_k127_4891810_0 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 613.0
YYD3_k127_4891810_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006604 344.0
YYD3_k127_4891810_2 DNA-templated transcription, initiation - - - 0.0000000000000000000000008058 106.0
YYD3_k127_4913522_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000003438 171.0
YYD3_k127_4913522_1 radical SAM domain protein - - - 0.000000000000000000000384 108.0
YYD3_k127_4913522_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000004746 84.0
YYD3_k127_4913522_3 STAS domain K04749 - - 0.000000000001271 72.0
YYD3_k127_4924604_0 Heavy metal translocating P-type atpase K01534 - 3.6.3.3,3.6.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 573.0
YYD3_k127_4924604_1 Catalyzes the conversion of dihydroorotate to orotate K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005783 349.0
YYD3_k127_4924604_10 Domain of unknown function (DUF4340) - - - 0.000000000000000002 98.0
YYD3_k127_4924604_11 Protein of unknown function (DUF2723) - - - 0.00000000000001115 88.0
YYD3_k127_4924604_12 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.0000000009955 68.0
YYD3_k127_4924604_13 type I phosphodiesterase nucleotide pyrophosphatase - - - 0.0000007739 60.0
YYD3_k127_4924604_14 Heat shock 70 kDa protein K04043 - - 0.000005335 57.0
YYD3_k127_4924604_15 - K05826 - - 0.00005907 49.0
YYD3_k127_4924604_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K09697 - 3.6.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 334.0
YYD3_k127_4924604_3 ABC-type uncharacterized transport system K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002665 288.0
YYD3_k127_4924604_4 tRNA processing K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002578 270.0
YYD3_k127_4924604_5 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003301 246.0
YYD3_k127_4924604_6 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000003447 226.0
YYD3_k127_4924604_7 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( K02823 - - 0.0000000000000000000000000000000000000000000001702 180.0
YYD3_k127_4924604_8 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000007541 129.0
YYD3_k127_4924604_9 PFAM Bacterial regulatory protein, arsR family K21903 - - 0.0000000000000000000000000002467 116.0
YYD3_k127_4929578_0 Involved in the tonB-independent uptake of proteins K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000001892 243.0
YYD3_k127_4929578_1 receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000003254 210.0
YYD3_k127_4944286_0 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 519.0
YYD3_k127_4944286_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003745 329.0
YYD3_k127_4944286_2 - - - - 0.00000000000000000000000000000002436 128.0
YYD3_k127_4944286_3 CHRD domain - - - 0.00000000000000000000000000009277 122.0
YYD3_k127_4944286_4 Glyoxalase bleomycin resistance protein dioxygenase K04750 - - 0.00000000000000000000000000895 115.0
YYD3_k127_4944286_5 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000001596 64.0
YYD3_k127_4944286_6 Epidermal growth factor-like domain. - - - 0.0002263 53.0
YYD3_k127_4952289_0 Insulinase (Peptidase family M16) K07263 - - 0.0 1026.0
YYD3_k127_4952289_1 Glycosyltransferase family 20 K16055 - 2.4.1.15,3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006769 569.0
YYD3_k127_4952289_10 - - - - 0.0004983 49.0
YYD3_k127_4952289_2 PFAM UBA THIF-type NAD FAD binding K21147 - 2.7.7.80,2.8.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 424.0
YYD3_k127_4952289_3 acyl-CoA transferase carnitine dehydratase K18702 - 2.8.3.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000904 426.0
YYD3_k127_4952289_4 Belongs to the cysteine synthase cystathionine beta- synthase family K12339,K21148 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0032991,GO:0033847,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0080146,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.113,2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 395.0
YYD3_k127_4952289_5 PFAM Response regulator receiver domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000008578 236.0
YYD3_k127_4952289_6 endonuclease III K01247 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000209 194.0
YYD3_k127_4952289_7 proteolysis - - - 0.00000000000000000000000000000000000003208 148.0
YYD3_k127_4952289_8 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.000000000000000000000000000000001826 140.0
YYD3_k127_4952289_9 PFAM ATP-binding region, ATPase domain protein K02486 - 2.7.13.3 0.0000000000000000000000000000001587 143.0
YYD3_k127_4958278_0 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K11103 - - 1.275e-202 638.0
YYD3_k127_4958278_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 530.0
YYD3_k127_4958278_2 Sodium/hydrogen exchanger family - - - 0.00000008033 55.0
YYD3_k127_4958278_3 membrane K11622 - - 0.0000004651 62.0
YYD3_k127_4959923_0 Dehydrogenase K00114 - 1.1.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005215 578.0
YYD3_k127_4959923_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 563.0
YYD3_k127_4959923_10 - - - - 0.00000000000004053 77.0
YYD3_k127_4959923_11 Haem-degrading K11477 - - 0.00000003577 62.0
YYD3_k127_4959923_12 SnoaL-like polyketide cyclase - - - 0.0006732 51.0
YYD3_k127_4959923_2 arylsulfatase activity K01132 - 3.1.6.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 543.0
YYD3_k127_4959923_3 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 382.0
YYD3_k127_4959923_4 NYN domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 302.0
YYD3_k127_4959923_5 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001812 280.0
YYD3_k127_4959923_6 COG0187 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) B subunit K02470,K02622 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000009125 251.0
YYD3_k127_4959923_7 PFAM Stage II sporulation E family protein K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000001854 183.0
YYD3_k127_4959923_8 peptidoglycan binding K03642 - - 0.00000000000000000000000000000003369 130.0
YYD3_k127_4959923_9 Cytochrome c - - - 0.0000000000000000000000000005109 117.0
YYD3_k127_4960119_0 Belongs to the dCTP deaminase family K01494 GO:0003674,GO:0003824,GO:0006139,GO:0006220,GO:0006244,GO:0006253,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008829,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009166,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046065,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003635 317.0
YYD3_k127_4960119_1 NDK K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000009349 110.0
YYD3_k127_4960119_3 - - - - 0.00000001896 67.0
YYD3_k127_4972869_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 3.872e-243 757.0
YYD3_k127_4980099_0 TonB dependent receptor - - - 2.764e-197 642.0
YYD3_k127_4980099_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003513 327.0
YYD3_k127_4980099_3 PFAM Carbohydrate-selective porin OprB - - - 0.0000000000000000000000000000000176 145.0
YYD3_k127_4980099_4 40-residue YVTN family beta-propeller repeat - - - 0.00000000000000000000000009853 121.0
YYD3_k127_4980099_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00000000000002011 83.0
YYD3_k127_4980099_6 Outer membrane efflux protein K15725 - - 0.0005459 48.0
YYD3_k127_49802_0 Peptidase family M1 domain K01256 - 3.4.11.2 1.745e-255 816.0
YYD3_k127_49802_1 PFAM glycine cleavage T protein (aminomethyl transferase) - - - 1.592e-199 630.0
YYD3_k127_49802_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009318 631.0
YYD3_k127_49802_3 HupE / UreJ protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008984 281.0
YYD3_k127_49802_4 Belongs to the proline racemase family K01777 - 5.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000002688 262.0
YYD3_k127_49802_5 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000005563 213.0
YYD3_k127_49802_6 HD domain - - - 0.00000000000000000000000000000000000000000000009052 188.0
YYD3_k127_49802_7 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000001811 144.0
YYD3_k127_49802_8 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000003297 123.0
YYD3_k127_4980992_0 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.000000000000000000000000000000000004013 149.0
YYD3_k127_4980992_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000002711 78.0
YYD3_k127_4980992_3 Formiminotransferase-cyclodeaminase - - - 0.000000002379 66.0
YYD3_k127_4996275_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 7.575e-294 928.0
YYD3_k127_4996275_1 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 6.113e-285 893.0
YYD3_k127_4996275_10 Phosphoribosyl transferase domain K00762 - 2.4.2.10 0.0000000000000000000000000000000000000006372 158.0
YYD3_k127_4996275_11 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000000001709 151.0
YYD3_k127_4996275_12 SnoaL-like domain - - - 0.0000000000000000000000000000000000003711 143.0
YYD3_k127_4996275_13 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000003712 156.0
YYD3_k127_4996275_14 domain protein K14194 - - 0.0000000000000000000000000001218 134.0
YYD3_k127_4996275_15 response regulator K07689 - - 0.00000000000000000000003807 105.0
YYD3_k127_4996275_16 PFAM von Willebrand factor type A K07114,K12511 - - 0.000000000000000002085 97.0
YYD3_k127_4996275_17 DinB superfamily - - - 0.0000000000000002433 85.0
YYD3_k127_4996275_18 DinB family - - - 0.0000000000503 70.0
YYD3_k127_4996275_19 COG2335, Secreted and surface protein containing fasciclin-like repeats - - - 0.000000007619 67.0
YYD3_k127_4996275_2 Two component regulator propeller K07315,K12132,K13924 - 2.1.1.80,2.7.11.1,3.1.1.61,3.1.3.3 8.5e-221 723.0
YYD3_k127_4996275_20 Carboxypeptidase regulatory-like domain - - - 0.0000009853 51.0
YYD3_k127_4996275_3 Dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004411 621.0
YYD3_k127_4996275_4 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 508.0
YYD3_k127_4996275_5 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 346.0
YYD3_k127_4996275_6 abc transporter atp-binding protein K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000315 263.0
YYD3_k127_4996275_7 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000001545 185.0
YYD3_k127_4996275_8 RNA signal recognition particle 4.5S RNA - - - 0.000000000000000000000000000000000000000000007654 165.0
YYD3_k127_4996275_9 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000000166 165.0
YYD3_k127_4996370_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1023.0
YYD3_k127_4996370_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 8.082e-228 735.0
YYD3_k127_4996370_2 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 6.766e-198 624.0
YYD3_k127_4996370_3 Zinc transporter K16267 - - 0.000000000000000000000000000000000000000000000000000000000000000000156 237.0
YYD3_k127_4996370_4 BON domain - - - 0.0000000000000000000000000000001377 130.0
YYD3_k127_4996370_5 von Willebrand factor, type A - - - 0.00000000000000000000000000185 126.0
YYD3_k127_4996370_6 Gram-negative bacterial TonB protein C-terminal - - - 0.00000000000000000000000003425 122.0
YYD3_k127_4996370_7 - - - - 0.00000000000000001401 89.0
YYD3_k127_4996370_8 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0001184 53.0
YYD3_k127_5003127_0 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 335.0
YYD3_k127_5003127_1 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000004026 156.0
YYD3_k127_5016640_0 Magnesium transport protein CorA - - - 0.000000000000000000000000000005569 121.0
YYD3_k127_5016640_1 Transposase K07494 - - 0.0000000000000000001661 100.0
YYD3_k127_5016640_2 Transposase and inactivated derivatives-like protein - - - 0.000000000000001146 85.0
YYD3_k127_5024391_0 PFAM Glutamyl glutaminyl-tRNA synthetase, class Ic, catalytic K01886 - 6.1.1.18 3.05e-253 792.0
YYD3_k127_5024391_1 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 507.0
YYD3_k127_5024391_2 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 450.0
YYD3_k127_5024391_3 - K00262 - 1.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 394.0
YYD3_k127_5024391_4 PFAM Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 338.0
YYD3_k127_5024391_5 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 334.0
YYD3_k127_5024391_6 PFAM Peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000002124 242.0
YYD3_k127_5024391_7 - - - - 0.000000000003113 76.0
YYD3_k127_5024391_8 - - - - 0.0000000003586 66.0
YYD3_k127_5036683_0 radical SAM domain protein - - - 3.202e-207 657.0
YYD3_k127_5036683_1 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402 485.0
YYD3_k127_5036683_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 407.0
YYD3_k127_5036683_3 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 327.0
YYD3_k127_5036683_4 efflux transmembrane transporter activity - - - 0.00000000000000000000000000001185 123.0
YYD3_k127_5047020_0 Domain of unknown function (DUF1998) K06877 - - 1.646e-290 912.0
YYD3_k127_5047020_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.175e-260 812.0
YYD3_k127_5047020_10 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000005588 116.0
YYD3_k127_5047020_11 O-Antigen ligase - - - 0.0001679 55.0
YYD3_k127_5047020_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 4.952e-222 696.0
YYD3_k127_5047020_3 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 464.0
YYD3_k127_5047020_4 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 371.0
YYD3_k127_5047020_5 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005782 261.0
YYD3_k127_5047020_6 Exonuclease K07502 - - 0.00000000000000000000000000000000000000000000000004244 198.0
YYD3_k127_5047020_7 Nodulation protein S (NodS) - - - 0.00000000000000000000000000000000000000000003711 170.0
YYD3_k127_5047020_8 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.00000000000000000000000000000000002438 141.0
YYD3_k127_5047020_9 manganese ion transmembrane transporter activity - - - 0.00000000000000000000000000001738 137.0
YYD3_k127_5048259_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1180.0
YYD3_k127_5048259_1 Chase2 domain K01768,K07814 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008001 402.0
YYD3_k127_5048259_2 Biotin-lipoyl like K07799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 332.0
YYD3_k127_5048259_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000005149 151.0
YYD3_k127_5057898_0 B12 binding domain - - - 1.337e-228 720.0
YYD3_k127_5057898_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003891 370.0
YYD3_k127_5057898_10 - - - - 0.0000000000000000002989 100.0
YYD3_k127_5057898_11 gag-polyprotein putative aspartyl protease - - - 0.000000000000000005735 94.0
YYD3_k127_5057898_12 Transcriptional regulatory protein, C terminal - - - 0.0000000000000002973 93.0
YYD3_k127_5057898_14 - - - - 0.0000009684 56.0
YYD3_k127_5057898_2 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 349.0
YYD3_k127_5057898_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000004096 247.0
YYD3_k127_5057898_4 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000001217 253.0
YYD3_k127_5057898_5 Lytic polysaccharide mono-oxygenase, cellulose-degrading - - - 0.00000000000000000000000000000000000000000000000006297 194.0
YYD3_k127_5057898_6 - - - - 0.0000000000000000000000000000000000000000001203 163.0
YYD3_k127_5057898_7 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000002163 141.0
YYD3_k127_5057898_8 HAD-hyrolase-like - - - 0.00000000000000000000000004588 117.0
YYD3_k127_5057898_9 Transcriptional regulator - - - 0.000000000000000000000004666 113.0
YYD3_k127_5129529_0 Glycosyl transferase family 21 - - - 1.818e-197 627.0
YYD3_k127_5129529_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 407.0
YYD3_k127_5129529_2 (AIR) carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 288.0
YYD3_k127_5129529_3 COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K02479 - - 0.0000000000000000000000000000000000000000000000000000000000001287 220.0
YYD3_k127_5129529_4 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000000000000002702 226.0
YYD3_k127_5129529_5 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000001685 226.0
YYD3_k127_5129529_6 - - - - 0.00001482 56.0
YYD3_k127_5129529_7 SnoaL-like domain - - - 0.00002341 55.0
YYD3_k127_5133305_0 Belongs to the sigma-70 factor family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 535.0
YYD3_k127_5133305_1 Peptidase family S41 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005737 336.0
YYD3_k127_5133305_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008952 289.0
YYD3_k127_5171149_0 rhs element vgr protein K11904 - - 6.139e-202 651.0
YYD3_k127_5171149_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 370.0
YYD3_k127_5171149_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000243 297.0
YYD3_k127_5178531_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 3.132e-233 733.0
YYD3_k127_5178531_1 amino acid K03294 - - 1.681e-211 666.0
YYD3_k127_5178531_10 Type ii and iii secretion system protein K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 327.0
YYD3_k127_5178531_11 PFAM DAHP synthetase I KDSA K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004589 313.0
YYD3_k127_5178531_12 Creatinase/Prolidase N-terminal domain K01262,K01271 - 3.4.11.9,3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002538 286.0
YYD3_k127_5178531_13 DNA polymerase X family K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000641 280.0
YYD3_k127_5178531_14 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000006008 268.0
YYD3_k127_5178531_15 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000184 250.0
YYD3_k127_5178531_16 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000000003889 210.0
YYD3_k127_5178531_17 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000006277 177.0
YYD3_k127_5178531_18 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.0000000000000000000000000000000000000000000003159 184.0
YYD3_k127_5178531_19 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000561 164.0
YYD3_k127_5178531_2 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006479 610.0
YYD3_k127_5178531_20 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0000166,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0004140,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019103,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032551,GO:0032552,GO:0032553,GO:0032554,GO:0032557,GO:0032558,GO:0032564,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.0000000000000000000000000000000000000000004619 164.0
YYD3_k127_5178531_21 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000007276 147.0
YYD3_k127_5178531_22 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000001289 126.0
YYD3_k127_5178531_23 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.0000000000000000000000003369 118.0
YYD3_k127_5178531_24 protein contain chitin-binding domain type 3 K01183,K21606 - 3.2.1.14,3.2.1.202 0.00000000000000000001503 103.0
YYD3_k127_5178531_25 PFAM Pilus assembly protein PilO K02664 - - 0.0000000000000000004221 94.0
YYD3_k127_5178531_28 Fimbrial assembly protein (PilN) K02663 - - 0.0000000000001658 79.0
YYD3_k127_5178531_29 peptidyl-tyrosine sulfation - - - 0.0000000000005749 82.0
YYD3_k127_5178531_3 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K00850,K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005768 403.0
YYD3_k127_5178531_30 Tetratricopeptide repeat - - - 0.000000000001296 74.0
YYD3_k127_5178531_4 Secretin and TonB N terminus short domain K02666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004314 373.0
YYD3_k127_5178531_5 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 349.0
YYD3_k127_5178531_6 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 336.0
YYD3_k127_5178531_7 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004238 337.0
YYD3_k127_5178531_8 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 329.0
YYD3_k127_5178531_9 pilus assembly protein K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006882 325.0
YYD3_k127_5181279_0 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 613.0
YYD3_k127_5181279_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 404.0
YYD3_k127_5181279_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008385 375.0
YYD3_k127_5181279_3 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008692 329.0
YYD3_k127_5181279_4 - - - - 0.00000000000000000000000000000000000000000000000000000000002576 218.0
YYD3_k127_5181279_5 phosphoprotein phosphatase activity K14680 - 6.5.1.3 0.00000000000000000000000000000000000000000000000000008126 201.0
YYD3_k127_5181279_6 methyltransferase K00563,K10947 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008270,GO:0008649,GO:0008757,GO:0008989,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0052912,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.187 0.0000000000000000000000000000000000000000000001311 180.0
YYD3_k127_5181279_7 WD40 domain protein beta Propeller - - - 0.00000000000000000000000000000002335 134.0
YYD3_k127_5181279_8 - - - - 0.00000000002955 70.0
YYD3_k127_5184843_0 DNA topological change K03168 - 5.99.1.2 8.295e-228 734.0
YYD3_k127_5184843_1 Methionine synthase K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 461.0
YYD3_k127_5184843_2 Protein of unknown function (DUF1552) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005676 402.0
YYD3_k127_5184843_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K15242,K15975 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 326.0
YYD3_k127_5184843_4 Ankyrin repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000005451 236.0
YYD3_k127_5184843_5 alcohol dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000005514 230.0
YYD3_k127_5184843_6 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000009662 173.0
YYD3_k127_5184843_7 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.0000000000000000000000005552 123.0
YYD3_k127_5184843_8 TonB-dependent receptor - - - 0.0000002525 63.0
YYD3_k127_5187158_0 4-oxalomesaconate hydratase K10220 - 4.2.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003209 518.0
YYD3_k127_5187158_1 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004959 530.0
YYD3_k127_5187158_2 ribonuclease inhibitor activity K10218 - 4.1.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 329.0
YYD3_k127_5187158_3 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000008281 138.0
YYD3_k127_5187158_4 - - - - 0.00000000000000002414 93.0
YYD3_k127_5195917_0 Carbon-nitrogen hydrolase K01502 - 3.5.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 578.0
YYD3_k127_5195917_1 Amidase K21801 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003341 490.0
YYD3_k127_5195917_2 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 336.0
YYD3_k127_5195917_3 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000000000006165 174.0
YYD3_k127_5195917_4 Amidase K21801 - - 0.0000000000000000000000000000008324 126.0
YYD3_k127_5206371_0 Cytochrome c K08685 - 1.4.9.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004473 430.0
YYD3_k127_5206371_1 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 422.0
YYD3_k127_5206371_2 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000594 393.0
YYD3_k127_5206371_3 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001621 264.0
YYD3_k127_5206371_4 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000000000000000000000000001494 175.0
YYD3_k127_5206371_5 YjbR - - - 0.0000000000000000000000000000000000000001391 156.0
YYD3_k127_5206371_6 - - - - 0.000000000000000000000002761 113.0
YYD3_k127_5206371_7 Methyltransferase domain - - - 0.0000000000009604 77.0
YYD3_k127_520962_0 Amidohydrolase family - - - 3.947e-201 639.0
YYD3_k127_520962_1 PFAM SMP-30 Gluconolaconase LRE domain protein K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000001709 259.0
YYD3_k127_520962_2 TipAS antibiotic-recognition domain K21744 - - 0.000000000000000000000000000000000000000000000000000000000000000001846 235.0
YYD3_k127_520962_3 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000965 236.0
YYD3_k127_520962_4 endonuclease activity K07451 - - 0.00000000000000000002127 100.0
YYD3_k127_520962_5 Mo-co oxidoreductase dimerisation domain K17225 - - 0.000000000000000001991 93.0
YYD3_k127_520962_6 SnoaL-like domain - - - 0.0000000264 63.0
YYD3_k127_520962_7 SnoaL-like domain - - - 0.0000002764 62.0
YYD3_k127_5216316_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 1.18e-321 1009.0
YYD3_k127_5216316_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.89e-279 882.0
YYD3_k127_5216316_10 PFAM Histidine triad (HIT) protein K02503 - - 0.000000000000000000000000000000000000000000000013 179.0
YYD3_k127_5216316_11 - - - - 0.0000000000000000000000000000000000000009014 157.0
YYD3_k127_5216316_12 endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000008814 149.0
YYD3_k127_5216316_13 BioY family K03523 - - 0.0000000000000000000000000000000000002973 148.0
YYD3_k127_5216316_14 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03635,K21142 - 2.8.1.12 0.000000000000000000000000000000000001464 143.0
YYD3_k127_5216316_15 PFAM NUDIX hydrolase K01515 - 3.6.1.13 0.00000000000000000000000000000001396 142.0
YYD3_k127_5216316_16 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000006676 132.0
YYD3_k127_5216316_17 Methyltransferase domain - - - 0.0000000000000000000000000000005082 133.0
YYD3_k127_5216316_18 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000001768 93.0
YYD3_k127_5216316_19 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000002229 100.0
YYD3_k127_5216316_2 Aspartate ammonia-lyase K01744 - 4.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007786 487.0
YYD3_k127_5216316_20 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.0000000000000004251 85.0
YYD3_k127_5216316_21 MoaE protein K21142 - 2.8.1.12 0.000000000007236 75.0
YYD3_k127_5216316_22 - - - - 0.000000001023 67.0
YYD3_k127_5216316_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000088 456.0
YYD3_k127_5216316_4 PFAM peptidase M16 domain protein K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000566 342.0
YYD3_k127_5216316_5 Phosphomethylpyrimidine kinase K00868,K00941,K03147,K21219 GO:0008150,GO:0040007 2.5.1.3,2.7.1.35,2.7.1.49,2.7.4.7,4.1.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000001006 274.0
YYD3_k127_5216316_6 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000002578 270.0
YYD3_k127_5216316_7 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000007449 246.0
YYD3_k127_5216316_8 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000004163 217.0
YYD3_k127_5216316_9 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.00000000000000000000000000000000000000000000000000003715 198.0
YYD3_k127_5217012_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0002790,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000928 599.0
YYD3_k127_5217012_1 Metallopeptidase family M24 K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 314.0
YYD3_k127_5217012_10 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000000007862 181.0
YYD3_k127_5217012_11 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000002417 179.0
YYD3_k127_5217012_12 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000004115 170.0
YYD3_k127_5217012_13 Binds to the 23S rRNA K02876 - - 0.000000000000000000000000000000000000000000003744 168.0
YYD3_k127_5217012_14 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.00000000000000000000000000000000000001051 147.0
YYD3_k127_5217012_15 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000007303 105.0
YYD3_k127_5217012_16 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000001656 98.0
YYD3_k127_5217012_17 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000253 93.0
YYD3_k127_5217012_18 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000009109 93.0
YYD3_k127_5217012_19 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000004556 71.0
YYD3_k127_5217012_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004162 293.0
YYD3_k127_5217012_20 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000000888 70.0
YYD3_k127_5217012_21 Ribosomal protein L30p/L7e K02907 - - 0.000000000006454 74.0
YYD3_k127_5217012_22 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000086 61.0
YYD3_k127_5217012_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002647 270.0
YYD3_k127_5217012_4 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000000381 228.0
YYD3_k127_5217012_5 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000001233 216.0
YYD3_k127_5217012_6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000002576 201.0
YYD3_k127_5217012_7 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000000000000000000000000000000000000000000000002184 192.0
YYD3_k127_5217012_8 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000004089 197.0
YYD3_k127_5217012_9 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000166 187.0
YYD3_k127_5241070_0 competence protein COMEC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004645 371.0
YYD3_k127_5241070_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004061 352.0
YYD3_k127_5241070_2 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004332 333.0
YYD3_k127_5241070_3 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000008304 141.0
YYD3_k127_5241070_4 AraC-like ligand binding domain - - - 0.000000000000000000000107 104.0
YYD3_k127_5241070_5 YjbR - - - 0.000000000000000000007513 96.0
YYD3_k127_5241070_6 Putative cyclase - - - 0.000000000001762 73.0
YYD3_k127_5241070_7 - - - - 0.00004881 53.0
YYD3_k127_5247280_0 TAT (twin-arginine translocation) pathway signal sequence - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 396.0
YYD3_k127_5247280_1 Dimerisation domain of Zinc Transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000003313 235.0
YYD3_k127_5247280_2 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.0000000000000000000000000000000000000000000000000000006732 193.0
YYD3_k127_5250081_0 signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 369.0
YYD3_k127_5250081_1 - - - - 0.0000000000000000000000000000000000000000000009396 173.0
YYD3_k127_5266439_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 309.0
YYD3_k127_5266439_1 - - - - 0.000000000000000000000000000001082 132.0
YYD3_k127_5266439_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000001099 118.0
YYD3_k127_5282891_0 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00239,K00244,K00278 GO:0000104,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0022900,GO:0032991,GO:0044237,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045283,GO:0045284,GO:0045333,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803 1.3.5.1,1.3.5.4,1.4.3.16 3.471e-293 908.0
YYD3_k127_5282891_1 nitrite transmembrane transporter activity K08177 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002944 544.0
YYD3_k127_5282891_10 - - - - 0.0000000000257 69.0
YYD3_k127_5282891_11 - - - - 0.0000008313 62.0
YYD3_k127_5282891_2 Dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005616 411.0
YYD3_k127_5282891_3 Succinate dehydrogenase fumarate reductase K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 397.0
YYD3_k127_5282891_4 PFAM Methylene-tetrahydromethanopterin dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000068 274.0
YYD3_k127_5282891_5 formaldehyde-activating enzyme K10713 - 4.2.1.147 0.0000000000000000000000000000000000000000000000000000000000000000000002648 241.0
YYD3_k127_5282891_6 Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane K00247 - - 0.00000000000000000000000000000000000003228 145.0
YYD3_k127_5282891_7 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000002156 152.0
YYD3_k127_5282891_8 Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane K00246 - - 0.000000000000000000000000000006239 130.0
YYD3_k127_5282891_9 - - - - 0.000000000000001808 78.0
YYD3_k127_5288037_0 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000007457 129.0
YYD3_k127_5288037_1 Amidohydrolase family - - - 0.000000000000000001631 87.0
YYD3_k127_5300137_0 - - - - 7.264e-202 654.0
YYD3_k127_5300137_1 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000001327 238.0
YYD3_k127_5300137_2 PFAM Xylose isomerase - - - 0.000000000000000000001224 104.0
YYD3_k127_5300137_3 domain protein - - - 0.000001519 59.0
YYD3_k127_5314682_0 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005105 485.0
YYD3_k127_5314682_1 ATP ADP translocase K03301 - - 0.000000000000000000000000000000000000000000000006959 179.0
YYD3_k127_5331332_0 Aminomethyltransferase folate-binding domain K15066 - 2.1.1.341 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005831 599.0
YYD3_k127_5331332_1 Two component transcriptional regulator, LytTR family K02477,K07705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007731 268.0
YYD3_k127_5331332_2 Dimerisation domain of Zinc Transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000003799 233.0
YYD3_k127_5331332_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000003625 148.0
YYD3_k127_5331332_4 Histidine kinase internal region K02478 - 2.7.13.3 0.00000000000000000000003144 102.0
YYD3_k127_5336405_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03694 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043335,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564 - 1.417e-233 736.0
YYD3_k127_5336405_1 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 285.0
YYD3_k127_5336405_2 tRNA synthetases class I (E and Q), catalytic domain K01894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005081 276.0
YYD3_k127_5336405_3 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0050896,GO:0051087 - 0.0000000000000000000000000000061 121.0
YYD3_k127_5336405_4 - - - - 0.00000000000000004304 88.0
YYD3_k127_5336405_5 RNA recognition motif - - - 0.0000000000000001566 88.0
YYD3_k127_5336405_6 Lysylphosphatidylglycerol synthase TM region - - - 0.00000007179 64.0
YYD3_k127_5336405_7 23S rRNA-intervening sequence protein - - - 0.000000512 58.0
YYD3_k127_5343186_0 Polysaccharide biosynthesis protein K01784,K02473 - 5.1.3.2,5.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002237 282.0
YYD3_k127_5343186_1 Domain of unknown function (DUF4382) - - - 0.00000000000007295 79.0
YYD3_k127_5363370_0 PIN domain - - - 0.000000000000000000000000000000004013 135.0
YYD3_k127_5363370_1 TIGRFAM TonB K03832 - - 0.0000000000000000001167 97.0
YYD3_k127_5363370_2 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.00000000000002744 82.0
YYD3_k127_5396472_0 Pfam:KaiC K08482 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006665 609.0
YYD3_k127_5396472_1 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000007243 182.0
YYD3_k127_5396472_2 PFAM KaiB domain K08481 - - 0.0000000000000000000000000000000000000005112 152.0
YYD3_k127_5396472_3 KaiB - - - 0.00000000000000000000000000000003343 132.0
YYD3_k127_5411068_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 1.627e-230 722.0
YYD3_k127_5411068_1 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.000000000000000000000000000000000000000000000000000000007835 209.0
YYD3_k127_5411068_2 transmembrane transport - - - 0.0000000000000000000000000000000000000000003121 162.0
YYD3_k127_5411068_3 Belongs to the HesB IscA family K15724 - - 0.00000000000000000000000000000002787 130.0
YYD3_k127_5411068_4 Belongs to the Fur family K03711 - - 0.00000000000000000000000004109 121.0
YYD3_k127_5411068_5 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141 - 2.7.7.76 0.00000000000000000000003387 106.0
YYD3_k127_5411068_6 ABC transporter, ATP-binding protein K02065 - - 0.00000000002191 74.0
YYD3_k127_5411068_7 Cold-Shock Protein K03704 - - 0.0000000001906 64.0
YYD3_k127_5411068_8 - - - - 0.00001496 57.0
YYD3_k127_5412025_0 peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 428.0
YYD3_k127_5412025_1 FMN-dependent dehydrogenase K00104,K16422 - 1.1.3.15,1.1.3.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003073 332.0
YYD3_k127_5412025_2 - - - - 0.0000000000000000000000000000000000000000000000004407 189.0
YYD3_k127_5412025_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000003987 159.0
YYD3_k127_5412025_4 - - - - 0.000000000000000000000000000000000000000006369 158.0
YYD3_k127_5412025_5 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000000000000001722 126.0
YYD3_k127_5412025_6 Histidine kinase - - - 0.0000000000000000000000000001944 122.0
YYD3_k127_5412025_7 Lipocalin-like domain - - - 0.0005151 52.0
YYD3_k127_5493818_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003459 586.0
YYD3_k127_5493818_1 protein-glutamate O-methyltransferase activity K00575,K03408,K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004843 304.0
YYD3_k127_5493818_2 - - - - 0.000000000000000000000000000000000000000000000000004298 194.0
YYD3_k127_5493818_3 - - - - 0.0000000000000000000000000000000000000000008761 171.0
YYD3_k127_5493818_4 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000004148 136.0
YYD3_k127_5493818_5 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.000000000000000000000000000000001885 151.0
YYD3_k127_5493818_6 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000002072 136.0
YYD3_k127_5509162_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 4.309e-299 933.0
YYD3_k127_5509162_1 Glycogen debranching enzyme - - - 5.032e-231 734.0
YYD3_k127_5509162_10 Penicillinase repressor - - - 0.000000000000000000000000000000000000000000007397 166.0
YYD3_k127_5509162_11 4'-phosphopantetheinyl transferase superfamily K06133 - - 0.0000000000000000000000000000000000000000003192 166.0
YYD3_k127_5509162_12 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000187 176.0
YYD3_k127_5509162_13 HEAT repeat - - - 0.0000000000000007162 88.0
YYD3_k127_5509162_15 - - - - 0.00004708 49.0
YYD3_k127_5509162_16 cell wall anchor domain - - - 0.0009127 49.0
YYD3_k127_5509162_2 synthase K06044 - 5.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 593.0
YYD3_k127_5509162_3 1,4-alpha-glucan branching enzyme activity K01236 - 3.2.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 561.0
YYD3_k127_5509162_4 Protein of unknown function (DUF2867) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 493.0
YYD3_k127_5509162_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005356 281.0
YYD3_k127_5509162_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001963 261.0
YYD3_k127_5509162_7 Bacterial transcription activator, effector binding domain K13652 - - 0.00000000000000000000000000000000000000000000000000000000000000001832 235.0
YYD3_k127_5509162_8 ubiE/COQ5 methyltransferase family K00570 - 2.1.1.17,2.1.1.71 0.000000000000000000000000000000000000000000000000000003776 198.0
YYD3_k127_5509162_9 Lipocalin-like domain K03098 - - 0.0000000000000000000000000000000000000000000008313 174.0
YYD3_k127_551635_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 315.0
YYD3_k127_551635_1 - - - - 0.0000000000000000000000000000000000000004562 161.0
YYD3_k127_5516736_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 332.0
YYD3_k127_5528463_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 576.0
YYD3_k127_5528463_1 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000006625 223.0
YYD3_k127_5528463_2 - - - - 0.000000000000000000000566 104.0
YYD3_k127_5528463_3 phosphoprotein phosphatase activity K14680 - 6.5.1.3 0.00000000000003301 81.0
YYD3_k127_5528463_4 - - - - 0.0000003198 59.0
YYD3_k127_5531477_0 Carboxypeptidase regulatory-like domain - - - 3.565e-209 690.0
YYD3_k127_5531477_1 Amidohydrolase K10221 - 3.1.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009712 549.0
YYD3_k127_5531477_10 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005374 300.0
YYD3_k127_5531477_11 Ndr family K01055 - 3.1.1.24 0.000000000000000000000000000000000000000000000000000000000000000002101 238.0
YYD3_k127_5531477_12 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000006039 161.0
YYD3_k127_5531477_13 Domain of unknown function (DUF4399) - - - 0.0000000000000000000614 96.0
YYD3_k127_5531477_14 Carboxypeptidase regulatory-like domain - - - 0.0000000006938 72.0
YYD3_k127_5531477_2 Gentisate 1,2-dioxygenase K00450 - 1.13.11.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 475.0
YYD3_k127_5531477_3 Sugar (and other) transporter K08195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009887 445.0
YYD3_k127_5531477_4 aldo keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003406 429.0
YYD3_k127_5531477_5 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004751 381.0
YYD3_k127_5531477_6 Catalyzes the conversion of maleate to fumarate K01799 - 5.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008036 350.0
YYD3_k127_5531477_7 Oxidoreductase family, NAD-binding Rossmann fold K10219 - 1.1.1.312 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 319.0
YYD3_k127_5531477_8 Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3- dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2- hydroxy-6-ketononatrienedioate, respectively K04099,K04101 - 1.13.11.57,1.13.11.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 317.0
YYD3_k127_5531477_9 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003057 308.0
YYD3_k127_5537819_0 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 509.0
YYD3_k127_5537819_1 metal-dependent hydrolase with the TIM-barrel fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001501 270.0
YYD3_k127_5537819_2 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000001297 140.0
YYD3_k127_5537819_3 Catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01886 GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.18 0.000000000000000008376 83.0
YYD3_k127_5562333_0 peptidyl-tyrosine sulfation K01277 - 3.4.14.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 540.0
YYD3_k127_5562333_1 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007428 479.0
YYD3_k127_5562333_2 peptidase S9B dipeptidylpeptidase IV domain protein K01278 - 3.4.14.5 0.0000000000000000000000000000000000000000000000000000000000000001365 234.0
YYD3_k127_5572578_0 chaperone-mediated protein folding K12132 - 2.7.11.1 9.728e-231 745.0
YYD3_k127_5572578_1 Belongs to the transketolase family K00615 - 2.2.1.1 7.895e-221 708.0
YYD3_k127_5572578_10 NAD(P)H-binding K17947 - 5.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 372.0
YYD3_k127_5572578_11 cytidylyl-transferase K00983 - 2.7.7.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005235 341.0
YYD3_k127_5572578_12 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 323.0
YYD3_k127_5572578_13 Putative ATP-binding cassette K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 326.0
YYD3_k127_5572578_14 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 335.0
YYD3_k127_5572578_15 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002701 308.0
YYD3_k127_5572578_16 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 292.0
YYD3_k127_5572578_17 Dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009812 277.0
YYD3_k127_5572578_18 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000558 271.0
YYD3_k127_5572578_19 Fad dependent oxidoreductase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000007726 263.0
YYD3_k127_5572578_2 Belongs to the aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 610.0
YYD3_k127_5572578_20 Carbamoyltransferase C-terminus K00612 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001003 257.0
YYD3_k127_5572578_21 Glycosyl transferase family group 2 K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000003206 236.0
YYD3_k127_5572578_22 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000001001 219.0
YYD3_k127_5572578_23 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000001218 211.0
YYD3_k127_5572578_24 PFAM transglutaminase domain protein - - - 0.0000000000000000000000000000000000000000000000000000008523 213.0
YYD3_k127_5572578_25 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000002259 201.0
YYD3_k127_5572578_26 PFAM Glycosyl transferase family 2 K07011 - - 0.00000000000000000000000000000000000000000000007369 180.0
YYD3_k127_5572578_27 RmlD substrate binding domain K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000001608 171.0
YYD3_k127_5572578_29 - - - - 0.0000000000000000000000000004507 119.0
YYD3_k127_5572578_3 UDP-N-acetylglucosamine 2-epimerase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007026 605.0
YYD3_k127_5572578_30 Methyltransferase domain - - - 0.000000000000000000000000162 116.0
YYD3_k127_5572578_31 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000522 78.0
YYD3_k127_5572578_32 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000007746 82.0
YYD3_k127_5572578_33 - - - - 0.00000000000002506 79.0
YYD3_k127_5572578_34 PFAM methyltransferase - - - 0.00001423 57.0
YYD3_k127_5572578_4 COGs COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004662 508.0
YYD3_k127_5572578_5 PFAM Carbamoyltransferase K00612 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005309 498.0
YYD3_k127_5572578_6 SPTR N-acetylneuraminic acid synthase, N-terminal domain protein K01654 - 2.5.1.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 491.0
YYD3_k127_5572578_7 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 473.0
YYD3_k127_5572578_8 NmrA-like family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004217 435.0
YYD3_k127_5572578_9 Thiazole biosynthesis protein ThiG K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005899 378.0
YYD3_k127_5572767_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 1.074e-250 786.0
YYD3_k127_5572767_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000002381 228.0
YYD3_k127_5572767_2 Peptidase family M23 - - - 0.0000000000000000000000000000000000001064 154.0
YYD3_k127_5579274_0 2-oxoglutarate dehydrogenase N-terminus K00164 - 1.2.4.2 0.0 1039.0
YYD3_k127_5579274_1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 406.0
YYD3_k127_5579274_2 HAD-superfamily hydrolase, subfamily IIB - - - 0.000000000000000000000000000000000000000000000000009787 192.0
YYD3_k127_5579274_3 abc-type fe3 -hydroxamate transport system, periplasmic component - - - 0.000000000000000000000000000000001777 134.0
YYD3_k127_5579274_4 Putative esterase - - - 0.00000000000000000000000000001243 127.0
YYD3_k127_5579274_5 SMART Signal transduction response regulator, receiver domain - - - 0.000000000000000000001207 102.0
YYD3_k127_5579274_6 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000002057 72.0
YYD3_k127_5581069_0 antibiotic biosynthetic process K01434 - 3.5.1.11 1.677e-215 696.0
YYD3_k127_5581069_1 alginic acid biosynthetic process K01729 - 4.2.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009305 593.0
YYD3_k127_5581069_10 Transcriptional regulatory protein, C terminal - - - 0.000000000000000001304 100.0
YYD3_k127_5581069_11 COG0457 FOG TPR repeat - - - 0.0004179 53.0
YYD3_k127_5581069_2 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009767 359.0
YYD3_k127_5581069_3 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009633 290.0
YYD3_k127_5581069_4 deacetylase K01463 - - 0.000000000000000000000000000000000000000000000000000000000001742 217.0
YYD3_k127_5581069_5 - - - - 0.0000000000000000000000000000000000004967 147.0
YYD3_k127_5581069_6 cytochrome K17230 - - 0.0000000000000000000000000000000008969 138.0
YYD3_k127_5581069_7 Amino acid oxidase - - - 0.00000000000000000000000000000005356 139.0
YYD3_k127_5581069_8 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000008421 131.0
YYD3_k127_5581069_9 PFAM Glycosyl transferase, group 1 K00754 - - 0.000000000000000000000000003441 112.0
YYD3_k127_5594772_0 LytB protein K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 432.0
YYD3_k127_5594772_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0005692 43.0
YYD3_k127_5611500_0 homocysteine S-methyltransferase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008962 602.0
YYD3_k127_5611500_1 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006749 333.0
YYD3_k127_5611500_10 Glycosyl transferases group 1 - - - 0.000000000000000000000000001241 126.0
YYD3_k127_5611500_11 Polysaccharide biosynthesis protein - - - 0.00000000000000000000073 110.0
YYD3_k127_5611500_12 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000001451 79.0
YYD3_k127_5611500_13 Putative beta-barrel porin 2 - - - 0.000003036 59.0
YYD3_k127_5611500_2 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001884 254.0
YYD3_k127_5611500_3 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000003427 241.0
YYD3_k127_5611500_4 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000001136 213.0
YYD3_k127_5611500_5 transferase activity, transferring glycosyl groups K00713,K03280 - 2.4.1.56 0.0000000000000000000000000000000000000000000000000000000126 216.0
YYD3_k127_5611500_6 ubiE/COQ5 methyltransferase family K00570 - 2.1.1.17,2.1.1.71 0.00000000000000000000000000000000000000000000000000001135 197.0
YYD3_k127_5611500_7 - - - - 0.00000000000000000000000000000000000000000000000000003083 205.0
YYD3_k127_5611500_8 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000003353 197.0
YYD3_k127_5611500_9 Polysaccharide export protein K01991,K20988 - - 0.000000000000000000000000000000000000000003749 168.0
YYD3_k127_56160_0 PFAM Prolyl oligopeptidase family - - - 9.318e-235 743.0
YYD3_k127_56160_1 cytochrome P450 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005945 445.0
YYD3_k127_56160_10 - - - - 0.00000000000000016 90.0
YYD3_k127_56160_11 - - - - 0.0000000000000003778 85.0
YYD3_k127_56160_12 Lysophospholipase L1-like esterase - - - 0.00003361 54.0
YYD3_k127_56160_13 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 - - 0.0008657 51.0
YYD3_k127_56160_2 transmembrane transporter activity K03535,K08194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003387 424.0
YYD3_k127_56160_3 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 371.0
YYD3_k127_56160_4 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000531 323.0
YYD3_k127_56160_5 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004917 281.0
YYD3_k127_56160_6 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000006272 231.0
YYD3_k127_56160_7 G/U mismatch-specific uracil-DNA glycosylase activity K01934,K03649 GO:0000700,GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008263,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360 3.2.2.28,6.3.3.2 0.000000000000000000000000000000000000000000002318 171.0
YYD3_k127_56160_8 peptidyl-prolyl cis-trans isomerase K03772 - 5.2.1.8 0.0000000000000000000000000000000008703 135.0
YYD3_k127_56160_9 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000001042 115.0
YYD3_k127_5617924_0 Activator of Hsp90 ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001471 276.0
YYD3_k127_5617924_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001 233.0
YYD3_k127_5617924_2 oxidoreductase activity, acting on CH-OH group of donors - - - 0.000000000000000000004666 94.0
YYD3_k127_5617924_3 Probable Zinc-ribbon domain - - - 0.0000000000002301 72.0
YYD3_k127_5628780_0 PQQ enzyme repeat K00117 - 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 542.0
YYD3_k127_5628780_1 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 517.0
YYD3_k127_5628780_2 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006439 357.0
YYD3_k127_5628780_3 cytochrome - - - 0.00000000000000000000000000000000000000000000000000000000000000000536 237.0
YYD3_k127_5628780_4 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000461 240.0
YYD3_k127_5628780_5 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000000002734 203.0
YYD3_k127_5628780_6 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000001257 141.0
YYD3_k127_5628780_7 - - - - 0.000000000000000001062 94.0
YYD3_k127_5646013_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 512.0
YYD3_k127_5646013_1 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 471.0
YYD3_k127_5646013_2 Belongs to the ClpA ClpB family K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005677 467.0
YYD3_k127_5646013_3 carboxylic ester hydrolase activity K03929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 403.0
YYD3_k127_5646013_4 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003791 280.0
YYD3_k127_5646013_5 ABC transporter K09697 - 3.6.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000001049 247.0
YYD3_k127_5646013_6 Polysaccharide biosynthesis protein K15856 - 1.1.1.281 0.00000000000000000000000000000000000000000000000000000000000000000001494 243.0
YYD3_k127_5646013_7 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000299 146.0
YYD3_k127_5646013_8 sodium ABC transporter, permease K09696 - - 0.00000000000000000000000000003464 128.0
YYD3_k127_5646013_9 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000004152 58.0
YYD3_k127_5653649_0 TonB-dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000008931 240.0
YYD3_k127_5653649_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000106 126.0
YYD3_k127_5663874_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 2.121e-222 703.0
YYD3_k127_5663874_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 370.0
YYD3_k127_5663874_2 Biotin-lipoyl like K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001375 261.0
YYD3_k127_5663874_3 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000224 186.0
YYD3_k127_5663874_4 Yip1 domain - - - 0.000001168 59.0
YYD3_k127_5670841_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 565.0
YYD3_k127_5670841_1 Acyl-CoA dehydrogenase, C-terminal domain K16173 - 1.3.99.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 512.0
YYD3_k127_5670841_10 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006592 314.0
YYD3_k127_5670841_11 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 295.0
YYD3_k127_5670841_12 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000008939 246.0
YYD3_k127_5670841_13 peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000001005 218.0
YYD3_k127_5670841_14 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000001282 205.0
YYD3_k127_5670841_15 domain protein - - - 0.0000000000000000000000000000000000000000000000000002259 197.0
YYD3_k127_5670841_16 Major facilitator superfamily K08161 - - 0.00000000000000000000000000000000000000000000009818 185.0
YYD3_k127_5670841_17 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000002665 175.0
YYD3_k127_5670841_18 Glycosyltransferase like family 2 K07011 - - 0.00000000000000000000000000000000000001763 156.0
YYD3_k127_5670841_19 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000002962 157.0
YYD3_k127_5670841_2 GDP-mannose 4,6 dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008253 470.0
YYD3_k127_5670841_20 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000001109 129.0
YYD3_k127_5670841_21 CDP-alcohol phosphatidyltransferase K00995,K08744 - 2.7.8.41,2.7.8.5 0.000000000000000000000000000003379 126.0
YYD3_k127_5670841_22 methyltransferase - - - 0.000000000003996 75.0
YYD3_k127_5670841_23 S-layer homology domain - - - 0.0000004968 62.0
YYD3_k127_5670841_24 Tetratricopeptide repeat - - - 0.0004015 53.0
YYD3_k127_5670841_3 lipid A export permease ATP-binding protein MsbA K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008579 484.0
YYD3_k127_5670841_4 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K02446 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 419.0
YYD3_k127_5670841_5 Bacterial sugar transferase K03606 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000316 424.0
YYD3_k127_5670841_6 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009326 380.0
YYD3_k127_5670841_7 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784,K12448 - 5.1.3.2,5.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002471 367.0
YYD3_k127_5670841_8 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000887 368.0
YYD3_k127_5670841_9 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005244 363.0
YYD3_k127_5673826_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.839e-287 896.0
YYD3_k127_5673826_1 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002802 257.0
YYD3_k127_5673826_2 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000008661 243.0
YYD3_k127_5673826_3 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000003215 181.0
YYD3_k127_5673826_4 Protein of unknown function (DUF3237) - - - 0.000000000000000000000000000000000000000000005503 169.0
YYD3_k127_5673826_5 TIGRFAM TonB family protein K03832 - - 0.00000000000005846 76.0
YYD3_k127_5673826_6 uracil phosphoribosyltransferase K00761 - 2.4.2.9 0.000002436 52.0
YYD3_k127_5673826_7 YtxH-like protein - - - 0.00003421 49.0
YYD3_k127_5678562_0 Involved in the TonB-independent uptake of proteins K03641 - - 0.00000000000000001895 88.0
YYD3_k127_5678562_1 PQQ-like domain K17760 - 1.1.9.1 0.00000000000000002745 87.0
YYD3_k127_5678562_2 SnoaL-like polyketide cyclase - - - 0.00000000003291 70.0
YYD3_k127_5678562_3 STAS domain K04749 - - 0.0001969 49.0
YYD3_k127_5683439_0 Belongs to the ClpA ClpB family K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 1.785e-268 848.0
YYD3_k127_5683439_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007359 473.0
YYD3_k127_5683439_2 TIGRFAM lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 323.0
YYD3_k127_5683439_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00042 - 1.1.1.60 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000312 283.0
YYD3_k127_5683439_4 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003057 244.0
YYD3_k127_5683439_5 TIGRFAM outer membrane protein assembly complex, YaeT protein K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000002193 255.0
YYD3_k127_5683439_6 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000000000000000000000000004763 146.0
YYD3_k127_5683439_7 Antibiotic biosynthesis monooxygenase K11530 - 5.3.1.32 0.000000000000002931 79.0
YYD3_k127_5683439_8 Protein tyrosine kinase - - - 0.00000000000005659 84.0
YYD3_k127_5683439_9 energy transducer activity K03832,K07126 - - 0.0003273 52.0
YYD3_k127_5690025_0 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000161 183.0
YYD3_k127_5710930_0 PFAM metal-dependent phosphohydrolase, HD sub domain - GO:0003674,GO:0003824,GO:0004112,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008081,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009187,GO:0009214,GO:0009987,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 432.0
YYD3_k127_5710930_1 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001206 266.0
YYD3_k127_5710930_10 PEGA domain K15539 - - 0.000004201 57.0
YYD3_k127_5710930_3 - - - - 0.000000000000000000000000001372 116.0
YYD3_k127_5710930_4 - - - - 0.000000000000000000001774 105.0
YYD3_k127_5710930_6 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.000000000000001539 78.0
YYD3_k127_5710930_7 - K00241 - - 0.00000000007273 68.0
YYD3_k127_5710930_8 Belongs to the peptidase S8 family - - - 0.0000000004211 70.0
YYD3_k127_5719017_0 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000001407 176.0
YYD3_k127_5719017_1 Glycosyl transferase family group 2 K07011 - - 0.00000000000000000000000000000000003447 142.0
YYD3_k127_5719017_2 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase - - - 0.000001123 62.0
YYD3_k127_574940_0 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002861 611.0
YYD3_k127_574940_1 Dehydrogenase K00117 - 1.1.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003459 612.0
YYD3_k127_574940_2 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003717 336.0
YYD3_k127_574940_3 - K06862 - - 0.00000000000000000000000000000000000000000000000000000000000000000005314 243.0
YYD3_k127_574940_4 PIN domain - - - 0.0000000000000000000000000000000000000002165 154.0
YYD3_k127_574940_5 Haem-degrading - - - 0.000000000000000000000000000000001134 135.0
YYD3_k127_574940_6 positive regulation of growth - - - 0.000000000000000002226 87.0
YYD3_k127_5753055_0 FR47-like protein - - - 0.0000000000000000000000000000000002583 135.0
YYD3_k127_5753055_1 LysE type translocator - - - 0.000000000000000000000000000000001712 137.0
YYD3_k127_5753055_2 Signal peptidase (SPase) II K03101 - 3.4.23.36 0.00000000000000000000000000000008285 130.0
YYD3_k127_5753055_3 PFAM Peptidase family M20 M25 M40 K01436 - - 0.0000000000000000000000002278 108.0
YYD3_k127_5753055_4 - - - - 0.00000000000000000007506 96.0
YYD3_k127_5753055_5 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00001629 48.0
YYD3_k127_5753055_6 COG0500 SAM-dependent methyltransferases - - - 0.0001725 52.0
YYD3_k127_5765827_0 TonB-dependent receptor - - - 2.141e-211 696.0
YYD3_k127_5765827_1 Tetratricopeptide repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001399 295.0
YYD3_k127_5765827_2 COG3209 Rhs family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005223 264.0
YYD3_k127_5765827_3 phosphoprotein phosphatase activity K14680 - 6.5.1.3 0.000000000000000000000000000000000000000000003125 175.0
YYD3_k127_5765827_4 arylsulfatase A - - - 0.000000000000000000000000000003397 130.0
YYD3_k127_5765827_5 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) - - - 0.00000000000000000001469 96.0
YYD3_k127_5765827_6 cAMP biosynthetic process - - - 0.00001332 55.0
YYD3_k127_5765827_7 Recombinase zinc beta ribbon domain - - - 0.0008989 42.0
YYD3_k127_577121_0 electron transport chain K00347,K03614 - 1.6.5.8 5.329e-245 767.0
YYD3_k127_577121_1 Tannase and feruloyl esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002654 473.0
YYD3_k127_577121_2 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005585 347.0
YYD3_k127_577121_3 electron transport chain K00347,K03614,K21163 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 319.0
YYD3_k127_577121_4 Protein of unknown function (DUF1211) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002867 282.0
YYD3_k127_577121_5 Twin-arginine translocation pathway signal protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007351 253.0
YYD3_k127_577121_6 TonB-dependent receptor - - - 0.0000000000000002043 92.0
YYD3_k127_581108_0 DNA topological change K03168 - 5.99.1.2 8.447e-246 785.0
YYD3_k127_581108_1 AAA ATPase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005566 499.0
YYD3_k127_581108_2 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 488.0
YYD3_k127_581108_3 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 377.0
YYD3_k127_581108_4 PFAM Ankyrin repeat K06867 - - 0.000000000000000000000000000000000001635 157.0
YYD3_k127_581108_5 ECF sigma factor K03088 - - 0.00000000000008249 84.0
YYD3_k127_581108_6 Tetratricopeptide repeat - - - 0.00000003893 66.0
YYD3_k127_581108_7 Regulatory protein, FmdB family - - - 0.0000001733 57.0
YYD3_k127_581108_8 SnoaL-like domain - - - 0.00003382 55.0
YYD3_k127_582470_0 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000583 259.0
YYD3_k127_582470_1 - - - - 0.000000000000000000008517 95.0
YYD3_k127_582470_2 phosphorelay signal transduction system - - - 0.000000000005037 70.0
YYD3_k127_5828022_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 623.0
YYD3_k127_5828022_1 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 372.0
YYD3_k127_5828022_2 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000006599 219.0
YYD3_k127_5828022_3 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000195 207.0
YYD3_k127_5828022_4 serine-type aminopeptidase activity K02030,K14475 - - 0.0000000000000000002293 91.0
YYD3_k127_5828022_5 competence protein COMEC - - - 0.000000000000000001 93.0
YYD3_k127_5828022_6 Papain family cysteine protease - - - 0.00000000000000005261 92.0
YYD3_k127_5833228_0 - - - - 0.0000000000000000000000000000000000000000000000000000000001424 214.0
YYD3_k127_5833228_1 Phage integrase, N-terminal SAM-like domain - - - 0.00000000000000000000000000000000000000000000000000008703 195.0
YYD3_k127_5833228_2 Psort location Cytoplasmic, score - - - 0.0000000000000000001512 95.0
YYD3_k127_5833228_3 light absorption - - - 0.0000000000000006068 82.0
YYD3_k127_5833228_4 SnoaL-like domain - - - 0.00000000000005797 78.0
YYD3_k127_5833228_5 Recombinase - - - 0.0000000000006531 80.0
YYD3_k127_5853412_0 DNA topological change K03168 - 5.99.1.2 1.186e-225 726.0
YYD3_k127_5853412_1 FAD binding domain - - - 7.901e-222 699.0
YYD3_k127_5853412_10 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000000000000000000000000000000000000003818 176.0
YYD3_k127_5853412_11 DnaJ molecular chaperone homology domain - - - 0.000000000000000000000000000000000000002211 154.0
YYD3_k127_5853412_12 Protein of unknown function (DUF1697) - - - 0.000000000000000000000000000000000002895 151.0
YYD3_k127_5853412_13 PFAM TonB-dependent Receptor Plug - - - 0.00000000000000000000000000000000005423 156.0
YYD3_k127_5853412_14 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000001781 129.0
YYD3_k127_5853412_15 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000001234 110.0
YYD3_k127_5853412_16 SMART Tetratricopeptide domain protein - - - 0.000000003569 68.0
YYD3_k127_5853412_2 Glucose-6-phosphate dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 587.0
YYD3_k127_5853412_3 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005568 463.0
YYD3_k127_5853412_4 Domain of unknown function (DUF4139) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003258 421.0
YYD3_k127_5853412_5 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000458 385.0
YYD3_k127_5853412_6 PFAM ATPase associated with various cellular activities, AAA_5 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 361.0
YYD3_k127_5853412_7 Histone methylation protein DOT1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 321.0
YYD3_k127_5853412_8 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000001061 233.0
YYD3_k127_5853412_9 response to abiotic stimulus K06867 - - 0.0000000000000000000000000000000000000000000000002385 198.0
YYD3_k127_5862916_0 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 550.0
YYD3_k127_588714_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 1.014e-200 661.0
YYD3_k127_588714_1 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000007321 237.0
YYD3_k127_588714_2 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000000000004601 213.0
YYD3_k127_588714_3 DNA-templated transcription, initiation - - - 0.0000000000000000000000000000000000000000000000000000005179 203.0
YYD3_k127_5890968_0 Acetyl-coenzyme A transporter 1 K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 571.0
YYD3_k127_5890968_1 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005086 445.0
YYD3_k127_5890968_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002632 283.0
YYD3_k127_5890968_3 Transcriptional regulator K07978,K07979 - - 0.000000000000000000000000000000000001771 143.0
YYD3_k127_5890968_4 - - - - 0.00000000000000000000000000000000003956 147.0
YYD3_k127_5890968_5 - - - - 0.000000000000000000000002456 115.0
YYD3_k127_5890968_6 - K01992 - - 0.00000006332 63.0
YYD3_k127_5890968_7 PFAM von Willebrand factor type A domain - - - 0.0001615 53.0
YYD3_k127_5909584_0 ABC transporter K02049 - - 0.000000000000000000000000000000000000000000000000000000001629 220.0
YYD3_k127_5909584_1 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000000001756 199.0
YYD3_k127_5909584_2 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000001304 149.0
YYD3_k127_5909584_3 ATPase activity - - - 0.000000000001754 76.0
YYD3_k127_5909584_4 - - - - 0.00000003295 64.0
YYD3_k127_591363_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000195 204.0
YYD3_k127_591363_1 RNA polymerase, sigma-24 subunit, ECF subfamily K02405 - - 0.00000000009775 63.0
YYD3_k127_5963715_0 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 549.0
YYD3_k127_5963715_1 membrane protein, TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 379.0
YYD3_k127_5963715_2 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002532 298.0
YYD3_k127_5963715_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000001693 161.0
YYD3_k127_5963715_4 lactoylglutathione lyase activity K03088 - - 0.0000000000000000000000000000000000004239 152.0
YYD3_k127_5963715_5 - - - - 0.0000000000000000000000000001074 119.0
YYD3_k127_5963715_6 Membrane - - - 0.0000000000000000000000004197 110.0
YYD3_k127_5963715_8 - - - - 0.0000004365 57.0
YYD3_k127_5963715_9 - - - - 0.0009183 48.0
YYD3_k127_6006882_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1171.0
YYD3_k127_6006882_1 DNA topological change K03168 - 5.99.1.2 2.284e-208 677.0
YYD3_k127_6006882_10 ATPases associated with a variety of cellular activities K02010 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000003496 221.0
YYD3_k127_6006882_11 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000000000000001513 190.0
YYD3_k127_6006882_12 response to copper ion K01187,K16915 - 3.2.1.20 0.000000000000000000000000000000000000000000001481 179.0
YYD3_k127_6006882_13 Binding-protein-dependent transport system inner membrane component K02011 - - 0.00000000000000000000000000000000000000000004269 181.0
YYD3_k127_6006882_14 - - - - 0.00000000000000000000000000000000000001382 166.0
YYD3_k127_6006882_15 - - - - 0.000000000000000000000000000005817 134.0
YYD3_k127_6006882_16 TonB-dependent Receptor Plug K02014 - - 0.00000000000000000000000000003316 136.0
YYD3_k127_6006882_17 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - 0.0000000000000000000000000002112 131.0
YYD3_k127_6006882_18 - - - - 0.00000000000000000000002897 110.0
YYD3_k127_6006882_19 - - - - 0.000001337 61.0
YYD3_k127_6006882_2 PQQ-like domain K05889 - 1.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006229 594.0
YYD3_k127_6006882_3 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 546.0
YYD3_k127_6006882_4 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004107 398.0
YYD3_k127_6006882_5 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007342 366.0
YYD3_k127_6006882_6 extracellular solute-binding protein K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002229 338.0
YYD3_k127_6006882_7 HupE / UreJ protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005922 283.0
YYD3_k127_6006882_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003931 287.0
YYD3_k127_6006882_9 Ankyrin repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000001015 258.0
YYD3_k127_6026534_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 455.0
YYD3_k127_6026534_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 430.0
YYD3_k127_6026534_10 Protein of unknown function (DUF1572) - - - 0.00000000000000000000000000000000000000000001711 168.0
YYD3_k127_6026534_11 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000007278 165.0
YYD3_k127_6026534_12 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000003337 150.0
YYD3_k127_6026534_13 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000001064 154.0
YYD3_k127_6026534_14 Belongs to the peptidase S11 family K07262 - - 0.0000000000000000000000000000000000008989 154.0
YYD3_k127_6026534_15 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.0000000000000000000000000000000007939 132.0
YYD3_k127_6026534_16 O-methyltransferase - - - 0.000000000000000000000000007942 117.0
YYD3_k127_6026534_17 Necessary for formate dehydrogenase activity K02380 - - 0.0000000000000000001144 102.0
YYD3_k127_6026534_18 oxidoreductase activity - - - 0.000000000000001018 90.0
YYD3_k127_6026534_19 protein histidine kinase activity - - - 0.00000000000006017 78.0
YYD3_k127_6026534_2 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006751 390.0
YYD3_k127_6026534_20 - - - - 0.0000000000001424 76.0
YYD3_k127_6026534_3 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 380.0
YYD3_k127_6026534_4 Belongs to the N(4) N(6)-methyltransferase family K00571,K00590 - 2.1.1.113,2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 342.0
YYD3_k127_6026534_5 Arginase family K01476 - 3.5.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007722 312.0
YYD3_k127_6026534_6 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000003026 212.0
YYD3_k127_6026534_7 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000004183 182.0
YYD3_k127_6026534_8 DinB family - - - 0.0000000000000000000000000000000000000000000001208 172.0
YYD3_k127_6026534_9 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000007251 184.0
YYD3_k127_6047039_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004384 291.0
YYD3_k127_6047039_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001856 269.0
YYD3_k127_6047039_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000003847 136.0
YYD3_k127_6056546_0 Di-haem cytochrome c peroxidase - - - 1.794e-308 959.0
YYD3_k127_6056546_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004958 619.0
YYD3_k127_6056546_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006022 612.0
YYD3_k127_6056546_3 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000003952 182.0
YYD3_k127_6056546_4 Protein of unknown function (DUF3738) - - - 0.0000000000000000002626 99.0
YYD3_k127_6056794_0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01585 - 4.1.1.19 3.352e-305 946.0
YYD3_k127_6056794_1 oligoendopeptidase F K08602 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005537 617.0
YYD3_k127_6056794_2 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 490.0
YYD3_k127_6056794_3 Threonine synthase N terminus K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004431 380.0
YYD3_k127_6056794_4 - - - - 0.000000000000000000000000000000006227 139.0
YYD3_k127_6056794_5 Thioesterase superfamily K10806 - - 0.00000000000000000000000000001299 126.0
YYD3_k127_605840_0 DNA alkylation repair enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007173 267.0
YYD3_k127_605840_1 Redoxin K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000788 206.0
YYD3_k127_605840_2 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.000000000000000000000000000000000000000000000000000001252 196.0
YYD3_k127_605840_3 COG4635 Flavodoxin K00230 - 1.3.5.3 0.000000000000000000000000000000000000634 146.0
YYD3_k127_605840_4 - - - - 0.00002557 46.0
YYD3_k127_6063130_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000003774 189.0
YYD3_k127_6063130_1 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000002062 138.0
YYD3_k127_6063130_2 protein kinase activity - - - 0.000000000004275 70.0
YYD3_k127_6064543_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 422.0
YYD3_k127_6065714_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 4.922e-278 874.0
YYD3_k127_6065714_1 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000001994 237.0
YYD3_k127_6065714_2 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000005105 172.0
YYD3_k127_6072513_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1108.0
YYD3_k127_6072513_1 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 4.812e-218 688.0
YYD3_k127_6072513_2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 553.0
YYD3_k127_6072513_3 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278,K00767 - 1.4.3.16,2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000009885 261.0
YYD3_k127_6072513_4 Cobalamin B12-binding K01849 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000003834 200.0
YYD3_k127_6072513_5 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000001447 154.0
YYD3_k127_6072513_6 oxidoreductase activity - - - 0.0000000000000002458 94.0
YYD3_k127_6072513_7 MacB-like periplasmic core domain - - - 0.000002772 51.0
YYD3_k127_6073491_0 PA domain K14647 GO:0005575,GO:0005576 - 1.955e-260 822.0
YYD3_k127_6073491_1 ABC transporter C-terminal domain K15738 - - 8.865e-202 644.0
YYD3_k127_6073491_2 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 423.0
YYD3_k127_6073491_3 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 377.0
YYD3_k127_6073491_4 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001053 271.0
YYD3_k127_6073491_5 - - - - 0.00000000000000000000000000001084 132.0
YYD3_k127_6073491_7 PA domain - - - 0.00000000000005417 76.0
YYD3_k127_6073491_9 oxidoreductase activity - - - 0.00001148 59.0
YYD3_k127_6083819_0 Glycosyl hydrolase family 67 C-terminus K01235 - 3.2.1.139 0.0 1027.0
YYD3_k127_6083819_1 PFAM Type II secretion system protein E K02652 - - 1.243e-232 733.0
YYD3_k127_6083819_10 Abc transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005784 260.0
YYD3_k127_6083819_11 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000000000000000000002201 166.0
YYD3_k127_6083819_12 Carbon dioxide concentrating mechanism carboxysome shell protein K04027 - - 0.000000000000000000000000000000000000001796 148.0
YYD3_k127_6083819_13 Type II secretion system protein G K02456 - - 0.0000000000000000000000000001177 121.0
YYD3_k127_6083819_14 Pilus assembly protein K02662 - - 0.00000000000000000000002454 112.0
YYD3_k127_6083819_16 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.000000001866 63.0
YYD3_k127_6083819_17 - - - - 0.00000005205 66.0
YYD3_k127_6083819_18 PFAM Fimbrial assembly family protein K02663 - - 0.000001106 60.0
YYD3_k127_6083819_19 - - - - 0.0001019 51.0
YYD3_k127_6083819_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K12661 - 4.2.1.90 7.638e-200 628.0
YYD3_k127_6083819_20 Pilus assembly protein, PilO K02664 - - 0.0001671 51.0
YYD3_k127_6083819_21 cellulose binding K13735 - - 0.0008169 51.0
YYD3_k127_6083819_3 PFAM Xylose isomerase domain protein TIM barrel K01805 - 5.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 556.0
YYD3_k127_6083819_4 PFAM Magnesium chelatase, ChlI subunit K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 543.0
YYD3_k127_6083819_5 TIGRFAM acetaldehyde dehydrogenase (acetylating) K00132 - 1.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004982 518.0
YYD3_k127_6083819_6 FGGY family of carbohydrate kinases, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007397 417.0
YYD3_k127_6083819_7 Lysin motif K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000419 354.0
YYD3_k127_6083819_8 Type ii and iii secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 351.0
YYD3_k127_6083819_9 Type II secretion system (T2SS), protein F K02455,K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 297.0
YYD3_k127_6098299_0 Glutamate synthase central domain K00265,K00284 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016020,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0040007,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2046.0
YYD3_k127_6098299_1 Flavin containing amine oxidoreductase K00266 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 1.4.1.13,1.4.1.14 7.386e-236 737.0
YYD3_k127_6098299_2 O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000849 581.0
YYD3_k127_6098299_3 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 580.0
YYD3_k127_6098299_4 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 496.0
YYD3_k127_6098299_5 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 449.0
YYD3_k127_6098299_6 L-lysine 6-monooxygenase (NADPH-requiring) K00384 - 1.8.1.9 0.0000000000000000000000005632 105.0
YYD3_k127_6109669_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009054 251.0
YYD3_k127_6109669_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001538 258.0
YYD3_k127_6109669_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000001769 195.0
YYD3_k127_6109669_3 Dodecin K09165 - - 0.000000000000000000022 94.0
YYD3_k127_6109669_5 Amidohydrolase family - - - 0.00004023 50.0
YYD3_k127_6113091_0 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005626 264.0
YYD3_k127_6113091_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009501 271.0
YYD3_k127_6113091_2 Xylose isomerase-like TIM barrel - - - 0.0000000000000431 72.0
YYD3_k127_6113091_3 Bacterial alpha-L-rhamnosidase C-terminal domain K05989 - 3.2.1.40 0.0000000435 64.0
YYD3_k127_6136880_0 ASPIC and UnbV - - - 1.319e-261 816.0
YYD3_k127_6136880_1 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008556 416.0
YYD3_k127_6136880_2 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 324.0
YYD3_k127_6136880_3 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000279 278.0
YYD3_k127_6136880_4 - - - - 0.0000000000000000000000000000000000000000000000000000000001581 219.0
YYD3_k127_6136880_5 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000000001803 207.0
YYD3_k127_6136880_6 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000003829 181.0
YYD3_k127_6136880_7 DinB family - - - 0.000000000000000000000000000000000001133 148.0
YYD3_k127_6144073_0 epoxide hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 456.0
YYD3_k127_6144073_1 epoxide hydrolase K01253,K21159 - 3.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 397.0
YYD3_k127_6144539_0 Neutral/alkaline non-lysosomal ceramidase, N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 599.0
YYD3_k127_6144539_1 Putative esterase - - - 0.00000000000000000000000000000000000000000003892 167.0
YYD3_k127_6144539_2 - - - - 0.000000000001507 74.0
YYD3_k127_6144539_3 - - - - 0.00000000002273 66.0
YYD3_k127_6144539_4 - - - - 0.00000001734 67.0
YYD3_k127_6147196_0 transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 572.0
YYD3_k127_6147196_1 PFAM ABC transporter transmembrane region K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008309 313.0
YYD3_k127_6147196_2 Cellulase N-terminal ig-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000006862 222.0
YYD3_k127_6149827_0 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 572.0
YYD3_k127_6149827_1 COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 432.0
YYD3_k127_6149827_10 BlaR1 peptidase M56 - - - 0.00000007624 63.0
YYD3_k127_6149827_11 Carboxypeptidase regulatory-like domain - - - 0.0000002473 61.0
YYD3_k127_6149827_2 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005185 381.0
YYD3_k127_6149827_3 BlaR1 peptidase M56 - - - 0.000000000000000000000000000000000000000000000000000000000109 228.0
YYD3_k127_6149827_4 Penicillinase repressor - - - 0.00000000000000000000000000000000000000006133 154.0
YYD3_k127_6149827_5 - - - - 0.0000000000000000000000000000001803 132.0
YYD3_k127_6149827_6 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000003541 104.0
YYD3_k127_6149827_7 - - - - 0.000000000000000000001378 102.0
YYD3_k127_6149827_9 - - - - 0.000000007483 64.0
YYD3_k127_6166541_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000436 598.0
YYD3_k127_6166541_1 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 449.0
YYD3_k127_6166541_10 PFAM Outer membrane efflux protein - - - 0.00000000000000000000000000000000000001245 164.0
YYD3_k127_6166541_11 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000001075 124.0
YYD3_k127_6166541_12 - - - - 0.000000000000003649 87.0
YYD3_k127_6166541_2 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 390.0
YYD3_k127_6166541_3 Protein of unknown function (DUF2400) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004166 254.0
YYD3_k127_6166541_4 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000006753 242.0
YYD3_k127_6166541_5 Belongs to the purine pyrimidine phosphoribosyltransferase family. PyrR subfamily K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000001834 232.0
YYD3_k127_6166541_6 PFAM Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000006766 205.0
YYD3_k127_6166541_7 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000004816 195.0
YYD3_k127_6166541_8 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000002805 178.0
YYD3_k127_6166541_9 YCII-related domain - - - 0.000000000000000000000000000000000000000000131 164.0
YYD3_k127_6173747_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 500.0
YYD3_k127_6173747_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 483.0
YYD3_k127_6173747_2 Serine aminopeptidase, S33 K06889 GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0009605,GO:0009607,GO:0030312,GO:0035821,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0044464,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052561,GO:0052562,GO:0052564,GO:0052572,GO:0071944,GO:0075136 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001468 272.0
YYD3_k127_6173747_3 Amidohydrolase K22213 - 4.1.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000659 255.0
YYD3_k127_6173747_4 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.000000000000000000000000000000000000000000000000000000000000000000006039 243.0
YYD3_k127_6173747_5 Pseudouridine synthase K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000004015 158.0
YYD3_k127_6173747_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000008465 123.0
YYD3_k127_6173747_7 NUDIX domain - - - 0.0000000000000000000001696 103.0
YYD3_k127_6173747_8 DUF167 K09131 - - 0.000000000000003262 78.0
YYD3_k127_6177659_0 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 493.0
YYD3_k127_6177659_1 Phospholipase D Transphosphatidylase K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 378.0
YYD3_k127_6177659_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005797 288.0
YYD3_k127_6177659_3 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001305 274.0
YYD3_k127_6177659_4 DEAD/H associated K03724 - - 0.0000000000000000000000000000000000000000000000000003272 195.0
YYD3_k127_6177659_5 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.000000000000000000000000000000007132 138.0
YYD3_k127_6195626_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 1.466e-196 640.0
YYD3_k127_6195626_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000001978 107.0
YYD3_k127_6232742_0 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 414.0
YYD3_k127_6232742_1 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003567 303.0
YYD3_k127_6232742_2 Probable zinc-ribbon domain - - - 0.000000000000000000000000000000000000000003659 156.0
YYD3_k127_6232742_3 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000000000001334 100.0
YYD3_k127_6232742_4 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.0000000000005952 76.0
YYD3_k127_6232742_5 PAS domain K02668 - 2.7.13.3 0.0000292 51.0
YYD3_k127_6233173_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 2.027e-250 799.0
YYD3_k127_6233173_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005717 422.0
YYD3_k127_6233173_10 TIGRFAM TonB family K03832 - - 0.00000000000000002238 93.0
YYD3_k127_6233173_11 GlcNAc-PI de-N-acetylase - - - 0.00000000001137 65.0
YYD3_k127_6233173_12 N-acetylglucosaminylinositol deacetylase activity K22135 - - 0.00000001265 57.0
YYD3_k127_6233173_13 Bacterial-like globin K06886 - - 0.00000003844 55.0
YYD3_k127_6233173_14 - - - - 0.0000005562 63.0
YYD3_k127_6233173_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 388.0
YYD3_k127_6233173_3 dihydroorotate dehydrogenase activity K00226 - 1.3.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 323.0
YYD3_k127_6233173_4 Haem-degrading - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006472 299.0
YYD3_k127_6233173_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001567 272.0
YYD3_k127_6233173_6 - - - - 0.00000000000000000000000000000000000000000000000000000000468 209.0
YYD3_k127_6233173_7 Protein of unknown function (DUF418) K07148 - - 0.00000000000000000000000000000000000004221 147.0
YYD3_k127_6233173_8 phosphoprotein phosphatase activity K14680 - 6.5.1.3 0.000000000000000000000000008438 125.0
YYD3_k127_6233173_9 von Willebrand factor, type A K07114,K12511 - - 0.000000000000000000000006575 117.0
YYD3_k127_6253639_0 metallocarboxypeptidase activity K14054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000491 452.0
YYD3_k127_6254038_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.393e-244 766.0
YYD3_k127_6254038_1 Cation transport protein K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 374.0
YYD3_k127_6254038_10 - - - - 0.0000000002799 64.0
YYD3_k127_6254038_2 Histidine kinase K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000114 273.0
YYD3_k127_6254038_3 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002836 245.0
YYD3_k127_6254038_4 TrkA-C domain K03499 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000000000000000000000000000000000000000000000000000000000002426 236.0
YYD3_k127_6254038_5 Response regulator receiver K07667 - - 0.00000000000000000000000000000000000000000000000000000000000000006818 229.0
YYD3_k127_6254038_6 Transcriptional regulator, Crp Fnr family - - - 0.0000000000000000000000000000000000000000000000000000000000000002898 226.0
YYD3_k127_6254038_7 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000006341 134.0
YYD3_k127_6254038_8 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 - 3.6.3.12 0.000000000000000000000001245 107.0
YYD3_k127_6254038_9 Cold shock protein domain - - - 0.00000000000000698 75.0
YYD3_k127_628977_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005377 491.0
YYD3_k127_628977_1 creatininase K01470 - 3.5.2.10 0.000000000000000000000000000000000001363 149.0
YYD3_k127_6298603_0 PFAM Radical SAM - - - 5.37e-211 665.0
YYD3_k127_6298603_1 Dehydrogenase K00114 - 1.1.2.8 2.113e-204 653.0
YYD3_k127_6298603_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004528 509.0
YYD3_k127_6298603_3 Dehydrogenase K00114 - 1.1.2.8 0.0000000000000000000000000000000002305 136.0
YYD3_k127_6299568_1 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000001471 220.0
YYD3_k127_6299568_2 - - - - 0.000000000000000000000000000000000000009105 149.0
YYD3_k127_6299568_4 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.00000000000009785 76.0
YYD3_k127_6299568_5 Doxx family - - - 0.00000000003807 70.0
YYD3_k127_6299568_6 efflux transmembrane transporter activity - - - 0.0000001226 54.0
YYD3_k127_6299568_7 Domain of unknown function (DU1801) - - - 0.000008044 52.0
YYD3_k127_6299731_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 5.219e-199 653.0
YYD3_k127_6299731_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005007 389.0
YYD3_k127_6299731_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002849 373.0
YYD3_k127_6299731_3 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001212 274.0
YYD3_k127_6299731_4 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000002362 210.0
YYD3_k127_6299731_5 Phage integrase family - - - 0.0000000000000000000000002603 114.0
YYD3_k127_6299731_6 - - - - 0.000000000000001567 81.0
YYD3_k127_6299731_7 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.000005945 49.0
YYD3_k127_6299731_8 - - - - 0.000009603 54.0
YYD3_k127_6299731_9 Phage integrase family - - - 0.00008218 50.0
YYD3_k127_6325114_0 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006251 430.0
YYD3_k127_6325114_1 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 342.0
YYD3_k127_6325114_2 NHL repeat containing protein - - - 0.00000000000000000000000000000000000001657 160.0
YYD3_k127_6325114_3 Cytochrome c mono- and diheme variants - - - 0.0000000000000000000000000000000000001864 150.0
YYD3_k127_6330223_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1376.0
YYD3_k127_6330223_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 612.0
YYD3_k127_6330223_2 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00627 GO:0003674,GO:0003824,GO:0004742,GO:0005488,GO:0005504,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016407,GO:0016417,GO:0016418,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030523,GO:0031405,GO:0031406,GO:0032787,GO:0032991,GO:0033293,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045254,GO:0046390,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681,GO:1902494,GO:1990204 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 454.0
YYD3_k127_6330223_3 Beta-lactamase superfamily domain K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000003241 253.0
YYD3_k127_6330223_4 uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000224 261.0
YYD3_k127_6343029_0 Tannase and feruloyl esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 453.0
YYD3_k127_6343029_1 HAD-hyrolase-like K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000005332 224.0
YYD3_k127_6343029_2 Domain of unknown function (DUF4265) - - - 0.000000000000000000000000000000000000000000000000000000000002639 213.0
YYD3_k127_6343029_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000003735 192.0
YYD3_k127_6343029_4 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768,K12132 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031224,GO:0031226,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0071704,GO:0071944,GO:0140096,GO:1901564 2.7.11.1,5.2.1.8 0.00000000000000000000000000000000000000000000001595 179.0
YYD3_k127_6343029_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000007324 158.0
YYD3_k127_6343029_6 Domain of unknown function (DUF4921) - - - 0.0000000000000000000000000000000000000004463 151.0
YYD3_k127_6343029_7 - - - - 0.0000000000000000000000000000000000002388 142.0
YYD3_k127_6343029_8 - - - - 0.00000000000001423 84.0
YYD3_k127_6343029_9 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000002301 61.0
YYD3_k127_637418_0 Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate K00451 - 1.13.11.5 5.502e-204 642.0
YYD3_k127_637418_1 Phosphoadenosine phosphosulfate reductase family K00957 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009892 474.0
YYD3_k127_637418_2 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00956 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004069 484.0
YYD3_k127_637418_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 325.0
YYD3_k127_637418_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003104 286.0
YYD3_k127_637418_5 Phosphoadenosine phosphosulfate reductase family K00390 - 1.8.4.10,1.8.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000000009291 257.0
YYD3_k127_637418_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000002758 153.0
YYD3_k127_6377365_0 type VI secretion protein K11891 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 377.0
YYD3_k127_6377365_1 type VI secretion-associated protein, BMA_A0400 family K11890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 346.0
YYD3_k127_6377365_2 This family consists of a number of uncharacterised bacterial proteins. The function of this family is K11900 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 308.0
YYD3_k127_6377365_3 Type VI secretion system, VipA, VC_A0107 or Hcp2 K11901 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 290.0
YYD3_k127_6377365_4 TIGRFAM type VI secretion-associated protein, ImpA family K11902 - - 0.000000000000000000000000000000000000000000121 173.0
YYD3_k127_6411221_0 Flavin containing amine oxidoreductase - - - 8.028e-285 885.0
YYD3_k127_6411221_1 metallopeptidase activity K03568 - - 1.728e-214 678.0
YYD3_k127_6411221_10 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000000000001557 158.0
YYD3_k127_6411221_11 domain protein K14194 - - 0.000000000000000000000000000000000000000003822 174.0
YYD3_k127_6411221_12 methylamine metabolic process K15977 - - 0.000000000000000000000000000001275 125.0
YYD3_k127_6411221_13 - - - - 0.000000000000000000000000000005762 124.0
YYD3_k127_6411221_14 - - - - 0.0000000000000007673 84.0
YYD3_k127_6411221_15 domain protein - - - 0.0000000000000008562 92.0
YYD3_k127_6411221_16 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine - - - 0.000000000000006439 76.0
YYD3_k127_6411221_17 helix_turn_helix, Lux Regulon K02479 - - 0.0000000003429 65.0
YYD3_k127_6411221_18 23S rRNA-intervening sequence protein - - - 0.00005738 49.0
YYD3_k127_6411221_2 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 587.0
YYD3_k127_6411221_3 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 530.0
YYD3_k127_6411221_4 metallopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006235 515.0
YYD3_k127_6411221_5 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003513 506.0
YYD3_k127_6411221_6 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 479.0
YYD3_k127_6411221_7 TIGRFAM phytoene desaturase K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 454.0
YYD3_k127_6411221_8 - - - - 0.0000000000000000000000000000000000000000000000000000000000003869 223.0
YYD3_k127_6411221_9 domain protein K14194 - - 0.0000000000000000000000000000000000000000000000000005098 205.0
YYD3_k127_6413979_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006893 476.0
YYD3_k127_6413979_1 - - - - 0.0000000000000000000004096 100.0
YYD3_k127_6413979_2 Protein of Unknown function (DUF2604) - - - 0.0000000002039 64.0
YYD3_k127_642585_0 Mo-co oxidoreductase dimerisation domain K17225 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006336 379.0
YYD3_k127_642585_1 HpcH/HpaI aldolase/citrate lyase family K01630,K02510 - 4.1.2.20,4.1.2.52 0.00000000000000000000000000000000000000000000000000000000000006795 222.0
YYD3_k127_642585_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000008064 226.0
YYD3_k127_642585_3 amidase activity K01426 - 3.5.1.4 0.0000000000000000000000000000000000000001948 165.0
YYD3_k127_642585_4 cytochrome K08738 - - 0.000000000000000000000000000000000000006161 153.0
YYD3_k127_642585_5 - - - - 0.0000000000000000008321 99.0
YYD3_k127_6427690_0 MacB-like periplasmic core domain - - - 7.262e-263 833.0
YYD3_k127_642944_0 Inorganic ion transport and metabolism K03319 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 513.0
YYD3_k127_642944_1 - - - - 0.0000000000000000000000000000000000000001682 155.0
YYD3_k127_642944_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000002857 163.0
YYD3_k127_642944_3 - - - - 0.0000000000000000000000000000008954 128.0
YYD3_k127_642944_4 - - - - 0.0000000000000008605 83.0
YYD3_k127_642944_5 - - - - 0.0000000000236 74.0
YYD3_k127_6505399_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1214.0
YYD3_k127_6505399_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000615 310.0
YYD3_k127_6505399_2 Outer membrane protein, OMP85 family K07277 - - 0.0000000004333 72.0
YYD3_k127_6509444_0 PAP2 superfamily - - - 4.211e-206 653.0
YYD3_k127_6509444_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 294.0
YYD3_k127_6509444_2 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000008086 146.0
YYD3_k127_6509444_3 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000000001656 109.0
YYD3_k127_6525796_0 Domain of unknown function (DUF5122) beta-propeller - - - 0.0000000000000000000000000000000000000000000000000000006877 209.0
YYD3_k127_6525796_1 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000175 192.0
YYD3_k127_6527371_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006563 372.0
YYD3_k127_6527371_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000505 327.0
YYD3_k127_6527371_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 295.0
YYD3_k127_6527371_3 AAA domain K02450,K12283 - - 0.00000000000000000000000000000000000000000000000000000000000007116 225.0
YYD3_k127_6527371_4 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000000000000000000000000000005875 201.0
YYD3_k127_6527371_5 Protein of unknown function (DUF1499) - - - 0.000000000000000000000000000000000000000000000000000003115 199.0
YYD3_k127_6527371_6 dUTP diphosphatase activity K01520,K13038 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022607,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0051259,GO:0051260,GO:0055086,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23,4.1.1.36,6.3.2.5 0.00000000000000000000000000000000001917 141.0
YYD3_k127_6527371_7 - - - - 0.0000001625 56.0
YYD3_k127_6527520_0 membrane organization K07277,K09800 - - 0.0 1251.0
YYD3_k127_6527520_1 PBS lyase HEAT-like repeat - - - 3.636e-219 712.0
YYD3_k127_6527520_10 - - - - 0.00000000000000000000000000000000000000000000000000000000000007297 225.0
YYD3_k127_6527520_11 CheC inhibitor of MCP methylation K03410 - - 0.00000000000000000000000000000000000000000000000000000007116 207.0
YYD3_k127_6527520_12 Response regulator receiver domain K03413 - - 0.0000000000000000000000000000000001554 137.0
YYD3_k127_6527520_13 LVIVD repeat - - - 0.0000000000000000000000009487 110.0
YYD3_k127_6527520_14 LVIVD repeat - - - 0.0000000000000000000001235 108.0
YYD3_k127_6527520_2 Peptidase family M28 K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 481.0
YYD3_k127_6527520_3 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 446.0
YYD3_k127_6527520_4 Histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008598 372.0
YYD3_k127_6527520_5 Methyltransferase, chemotaxis proteins K00575,K13486 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008367 311.0
YYD3_k127_6527520_7 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002657 268.0
YYD3_k127_6527520_8 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001031 242.0
YYD3_k127_6527520_9 Virulence factor BrkB K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000009155 238.0
YYD3_k127_6560232_0 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000005965 192.0
YYD3_k127_6560232_1 - - - - 0.00000001721 65.0
YYD3_k127_6560232_2 bacterial-type flagellum-dependent cell motility - - - 0.0003042 51.0
YYD3_k127_6568774_0 (GMC) oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 436.0
YYD3_k127_6568774_1 cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 383.0
YYD3_k127_6568774_10 Belongs to the 'phage' integrase family - - - 0.0001622 48.0
YYD3_k127_6568774_2 MreB/Mbl protein K03569 GO:0000003,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005886,GO:0007049,GO:0008150,GO:0008360,GO:0009987,GO:0016020,GO:0019954,GO:0022402,GO:0022414,GO:0022603,GO:0022604,GO:0031224,GO:0031226,GO:0032505,GO:0042802,GO:0043093,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051301,GO:0051302,GO:0051782,GO:0051983,GO:0065007,GO:0065008,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 383.0
YYD3_k127_6568774_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000001008 141.0
YYD3_k127_6568774_4 PFAM aldo keto reductase - - - 0.00000000000000000000000000001098 130.0
YYD3_k127_6568774_5 SnoaL-like polyketide cyclase K06893 - - 0.000000000000000000000009039 106.0
YYD3_k127_6568774_6 - - - - 0.0000000000000003914 83.0
YYD3_k127_6568774_7 Methyltransferase FkbM domain - - - 0.000000000000262 79.0
YYD3_k127_6568774_8 Dienelactone hydrolase family - - - 0.000006884 49.0
YYD3_k127_6568774_9 PFAM Peptidase M1, membrane alanine aminopeptidase K01256,K08776 - 3.4.11.2 0.0001525 47.0
YYD3_k127_6573501_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009561 496.0
YYD3_k127_6573501_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004063 402.0
YYD3_k127_6573501_10 binds to the 23S rRNA K02939 - - 0.00000000000000000000000000000000000000002455 156.0
YYD3_k127_6573501_11 Tetratricopeptide repeat K11935 - - 0.0000000000000000000000000000007036 138.0
YYD3_k127_6573501_12 'Cold-shock' DNA-binding domain K03704 - - 0.0000000000000000000000000002969 117.0
YYD3_k127_6573501_13 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000001447 103.0
YYD3_k127_6573501_14 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000133 100.0
YYD3_k127_6573501_15 TIGRFAM TonB family protein K03832 - - 0.000000000000000000114 93.0
YYD3_k127_6573501_16 Trm112p-like protein K00912,K09791 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.7.1.130 0.000000000000000008648 84.0
YYD3_k127_6573501_18 Methyltransferase domain - - - 0.0009548 51.0
YYD3_k127_6573501_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 401.0
YYD3_k127_6573501_3 Glutamine cyclotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 300.0
YYD3_k127_6573501_4 Phosphomethylpyrimidine kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000006531 228.0
YYD3_k127_6573501_5 O-Antigen ligase K18814 - - 0.000000000000000000000000000000000000000000000000000001816 207.0
YYD3_k127_6573501_6 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000001407 199.0
YYD3_k127_6573501_7 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000866 196.0
YYD3_k127_6573501_8 Glycosyl transferase, family 9 K02843,K02849 - - 0.00000000000000000000000000000000000000000000000001747 192.0
YYD3_k127_6573501_9 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000000000001826 186.0
YYD3_k127_6592169_0 TIGRFAM type VI secretion ATPase, ClpV1 family K11907 - - 0.0 1295.0
YYD3_k127_6592169_1 type VI secretion protein K11895 - - 0.000000000000000000000000000000000000000000188 163.0
YYD3_k127_6592169_2 Nodulation protein S (NodS) - - - 0.00000000000000000000000000006045 121.0
YYD3_k127_65999_0 peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005245 394.0
YYD3_k127_65999_1 PFAM TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000000004276 130.0
YYD3_k127_6613633_0 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003858 497.0
YYD3_k127_6613633_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 456.0
YYD3_k127_6613633_10 positive regulation of macromolecule biosynthetic process K03973 - - 0.0000000000000008479 84.0
YYD3_k127_6613633_11 PFAM AsmA family K07289 - - 0.0000000004843 72.0
YYD3_k127_6613633_2 PFAM NAD-dependent epimerase dehydratase K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 430.0
YYD3_k127_6613633_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007469 432.0
YYD3_k127_6613633_4 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 398.0
YYD3_k127_6613633_5 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 313.0
YYD3_k127_6613633_6 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000002776 211.0
YYD3_k127_6613633_7 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000001921 198.0
YYD3_k127_6613633_8 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.000000000000000000000000000000000000000000004257 173.0
YYD3_k127_6613633_9 Domain of unknown function (DUF4112) - - - 0.0000000000000000000000000000001183 131.0
YYD3_k127_6615483_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 7.969e-245 765.0
YYD3_k127_6615483_1 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 1.919e-220 698.0
YYD3_k127_6615483_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000001429 157.0
YYD3_k127_6615483_11 Biotin-requiring enzyme - - - 0.00000000000000000000402 101.0
YYD3_k127_6615483_12 Fibronectin type 3 domain - - - 0.00000000003895 76.0
YYD3_k127_6615483_13 PFAM PEGA domain - - - 0.00001587 57.0
YYD3_k127_6615483_14 AsmA family - - - 0.00001885 53.0
YYD3_k127_6615483_2 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000074 608.0
YYD3_k127_6615483_3 ABC transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006912 616.0
YYD3_k127_6615483_4 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 498.0
YYD3_k127_6615483_5 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 317.0
YYD3_k127_6615483_6 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 304.0
YYD3_k127_6615483_7 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005548 295.0
YYD3_k127_6615483_8 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000005475 252.0
YYD3_k127_6615483_9 PFAM ATP-binding region, ATPase domain protein K02668,K07708,K07709 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000002292 208.0
YYD3_k127_6616868_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 391.0
YYD3_k127_6616868_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000001494 183.0
YYD3_k127_6616868_2 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000003726 113.0
YYD3_k127_6618781_0 amine dehydrogenase activity K09022 - 3.5.99.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 314.0
YYD3_k127_6618781_1 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000000000002 155.0
YYD3_k127_6618781_2 - - - - 0.0000000000000000000002275 107.0
YYD3_k127_6635013_0 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005086 300.0
YYD3_k127_6635013_1 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004405 262.0
YYD3_k127_6635013_2 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002802 257.0
YYD3_k127_6635013_3 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000007592 201.0
YYD3_k127_6635013_4 Protein of unknown function (DUF2934) - - - 0.00001129 53.0
YYD3_k127_6635013_5 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0001125 48.0
YYD3_k127_6652803_0 Acetyl-coenzyme A synthetase N-terminus K01895 - 6.2.1.1 3.141e-303 946.0
YYD3_k127_6652803_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 1.145e-231 728.0
YYD3_k127_6652803_10 Calcineurin-like phosphoesterase K01077 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 295.0
YYD3_k127_6652803_11 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001294 267.0
YYD3_k127_6652803_12 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K01247 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000000008683 239.0
YYD3_k127_6652803_13 Spore coat protein CotH - - - 0.000000000000000000000000000000000000000000000000000000000000000001621 244.0
YYD3_k127_6652803_14 Putative restriction endonuclease - - - 0.000000000000000000000000000000000000000000000000000004417 196.0
YYD3_k127_6652803_15 - - - - 0.0000000000000000000000000000000000000000002964 171.0
YYD3_k127_6652803_16 - - - - 0.000000000000000000000000000000000000000009954 158.0
YYD3_k127_6652803_17 Bacterial extracellular solute-binding protein K02020,K22003 - 5.3.3.7 0.00000000000000000000000000000000005534 147.0
YYD3_k127_6652803_18 dTDP biosynthetic process K00560,K00943 - 2.1.1.45,2.7.4.9 0.000000000000000000000000003135 121.0
YYD3_k127_6652803_19 - - - - 0.0000000000000000000000008697 117.0
YYD3_k127_6652803_2 N-acetyldiaminopimelate deacetylase activity K12941 - - 2.881e-229 721.0
YYD3_k127_6652803_20 Protein of unknown function, DUF485 - - - 0.0000000000000000000001523 100.0
YYD3_k127_6652803_21 phosphate-selective porin O and P K07221 - - 0.0000000000000000002048 93.0
YYD3_k127_6652803_22 Glycosyl hydrolases family 18 K01183 - 3.2.1.14 0.0003671 48.0
YYD3_k127_6652803_3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 2.357e-199 653.0
YYD3_k127_6652803_4 PQQ enzyme repeat K00117 - 1.1.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005116 618.0
YYD3_k127_6652803_5 PQQ-like domain K00117 - 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007844 594.0
YYD3_k127_6652803_6 alcohol dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006116 403.0
YYD3_k127_6652803_7 peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 379.0
YYD3_k127_6652803_8 dTDP biosynthetic process K00560,K00943,K01585 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004798,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009129,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009161,GO:0009165,GO:0009173,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019001,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046044,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046872,GO:0046940,GO:0046983,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.1.1.45,2.7.4.9,4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 347.0
YYD3_k127_6652803_9 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005375 332.0
YYD3_k127_6661498_0 PQQ-like domain K05889 - 1.1.2.6 6.357e-198 634.0
YYD3_k127_6661498_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 398.0
YYD3_k127_6661498_10 Cytochrome P460 - - - 0.000000000000000000000000000000000000000000000000002717 188.0
YYD3_k127_6661498_11 YCII-related domain - - - 0.000000000000000000000000000000000000000000341 162.0
YYD3_k127_6661498_12 ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component - - - 0.000000000000000000000000000000000000000001139 163.0
YYD3_k127_6661498_13 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000001031 173.0
YYD3_k127_6661498_14 EVE domain - - - 0.00000000000000000000000000000000000000002274 156.0
YYD3_k127_6661498_15 AI-2E family transporter - - - 0.00000000000000000000000000000000000000115 161.0
YYD3_k127_6661498_16 - - - - 0.000000000000000000000000000000000000002262 168.0
YYD3_k127_6661498_17 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000002866 132.0
YYD3_k127_6661498_18 lipoprotein localization to outer membrane - - - 0.000000000000000000004925 104.0
YYD3_k127_6661498_19 - - - - 0.00000000002266 77.0
YYD3_k127_6661498_2 metallophosphoesterase K07096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 332.0
YYD3_k127_6661498_3 Histidine kinase K07683 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002432 344.0
YYD3_k127_6661498_4 amino acid-binding ACT domain protein K04518 - 4.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005068 292.0
YYD3_k127_6661498_5 glucose sorbosone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005013 289.0
YYD3_k127_6661498_6 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000002306 263.0
YYD3_k127_6661498_7 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001552 262.0
YYD3_k127_6661498_8 Nucleotidyl transferase of unknown function (DUF2204) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001061 271.0
YYD3_k127_6661498_9 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000001576 228.0
YYD3_k127_6665034_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 357.0
YYD3_k127_6665034_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005696 285.0
YYD3_k127_6665034_2 PFAM Class II aldolase adducin K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000000000000000007677 239.0
YYD3_k127_6665034_3 Tetratricopeptide repeat - - - 0.000000000000000008826 91.0
YYD3_k127_6665034_4 SMART TRASH domain protein - - - 0.00006551 49.0
YYD3_k127_6682516_0 PFAM peptidase S9 prolyl oligopeptidase active site domain protein K01322,K01354 - 3.4.21.26,3.4.21.83 3.803e-250 790.0
YYD3_k127_6682516_1 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000001611 150.0
YYD3_k127_6682516_2 Inorganic ion transport and metabolism K03319 - - 0.000000000000000000000000000000000001722 139.0
YYD3_k127_6682516_3 His Kinase A (phosphoacceptor) domain K11527 - 2.7.13.3 0.0000000000007098 74.0
YYD3_k127_6682516_4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.0002458 47.0
YYD3_k127_6682516_5 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.0004643 49.0
YYD3_k127_6690058_0 PQQ-like domain K00114 - 1.1.2.8 5.034e-226 715.0
YYD3_k127_6690058_1 DegT/DnrJ/EryC1/StrS aminotransferase family K12452 - 1.17.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008336 567.0
YYD3_k127_6690058_10 Methyltransferase domain - - - 0.000000000000000000297 105.0
YYD3_k127_6690058_11 Short-chain dehydrogenase reductase sdr K00065 - 1.1.1.127 0.0000000000000000006313 96.0
YYD3_k127_6690058_12 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000008728 84.0
YYD3_k127_6690058_13 MTH538 TIR-like domain (DUF1863) - - - 0.00000000000002566 80.0
YYD3_k127_6690058_14 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000002505 74.0
YYD3_k127_6690058_15 O-methyltransferase activity - - - 0.00000000002257 79.0
YYD3_k127_6690058_16 SMART Elongator protein 3 MiaB NifB - - - 0.0000000003791 72.0
YYD3_k127_6690058_17 Glycosyltransferase like family 2 K20444 - - 0.00000000725 70.0
YYD3_k127_6690058_18 Tetratricopeptide repeat - - - 0.0000002116 62.0
YYD3_k127_6690058_19 rRNA (guanine-N2-)-methyltransferase activity - - - 0.0002612 52.0
YYD3_k127_6690058_2 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 560.0
YYD3_k127_6690058_3 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K00162,K21417 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000819 467.0
YYD3_k127_6690058_4 NAD-dependent epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000788 441.0
YYD3_k127_6690058_5 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K21416 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 358.0
YYD3_k127_6690058_6 hydrolase activity, acting on ester bonds - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 355.0
YYD3_k127_6690058_7 Bacterial extracellular solute-binding proteins, family 3 K16254 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002847 284.0
YYD3_k127_6690058_8 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000005614 256.0
YYD3_k127_6690058_9 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000007598 108.0
YYD3_k127_6695062_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 514.0
YYD3_k127_6702015_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 556.0
YYD3_k127_6702015_1 DNA topological change K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 537.0
YYD3_k127_6702015_2 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 419.0
YYD3_k127_6702015_3 PFAM Alcohol dehydrogenase GroES-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007159 341.0
YYD3_k127_6702015_4 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005658 306.0
YYD3_k127_6702015_5 spectrin binding K07521,K15502,K19947 - 1.14.13.225 0.0000000000000000000000000000000001844 152.0
YYD3_k127_6702015_6 PFAM Alcohol dehydrogenase - - - 0.00000001377 61.0
YYD3_k127_6707627_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 7.251e-254 812.0
YYD3_k127_6707627_1 Ankyrin repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005684 291.0
YYD3_k127_6707627_2 Cupin 2, conserved barrel domain protein K11477 - - 0.0000000000000000000002499 102.0
YYD3_k127_6707627_3 - - - - 0.000000000000002711 80.0
YYD3_k127_6707627_4 SnoaL-like domain - - - 0.0000000001 67.0
YYD3_k127_6722565_0 oligopeptide transporter, OPT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005731 547.0
YYD3_k127_6722714_0 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 569.0
YYD3_k127_6722714_1 TIR domain - - - 0.000000000000001863 82.0
YYD3_k127_6744086_0 Belongs to the GSP D family K02280 - - 0.0000000000000000000000000000000000000000000000000005874 190.0
YYD3_k127_6744086_1 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000002592 82.0
YYD3_k127_6788756_0 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00171,K03737 - 1.2.7.1 2.918e-213 669.0
YYD3_k127_6788756_1 Cys-tRNA(Pro) hydrolase activity K19055 - - 0.00000000000000000000000000005152 123.0
YYD3_k127_6796179_0 Efflux pump membrane transporter K18299 - - 0.0 1441.0
YYD3_k127_6796179_1 Winged helix DNA-binding domain K09927 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 514.0
YYD3_k127_6796179_10 General secretion pathway K02450 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000002782 195.0
YYD3_k127_6796179_11 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000002373 182.0
YYD3_k127_6796179_12 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000000000000005601 160.0
YYD3_k127_6796179_13 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000003655 146.0
YYD3_k127_6796179_14 Methyltransferase FkbM domain - - - 0.0000000000000000000000000000000001584 143.0
YYD3_k127_6796179_17 - - - - 0.0002392 47.0
YYD3_k127_6796179_18 Transglutaminase-like superfamily - - - 0.0002575 49.0
YYD3_k127_6796179_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18300 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 432.0
YYD3_k127_6796179_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18298 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 395.0
YYD3_k127_6796179_4 FtsX-like permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003667 413.0
YYD3_k127_6796179_5 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005987 386.0
YYD3_k127_6796179_6 COG0657 Esterase lipase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 316.0
YYD3_k127_6796179_7 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 306.0
YYD3_k127_6796179_8 helix_turn_helix, Lux Regulon K07684 - - 0.0000000000000000000000000000000000000000000000000000000001293 211.0
YYD3_k127_6796179_9 G-rich domain on putative tyrosine kinase K16554 - - 0.0000000000000000000000000000000000000000000000000004335 202.0
YYD3_k127_6844041_0 Pyrrolo-quinoline quinone K00114 - 1.1.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006766 553.0
YYD3_k127_6844041_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007345 351.0
YYD3_k127_68485_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 8.588e-299 929.0
YYD3_k127_6868939_0 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000000002442 160.0
YYD3_k127_6868939_1 cytochrome c oxidase subunit II K02275 - 1.9.3.1 0.0000000000000003269 88.0
YYD3_k127_6868939_3 PFAM DinB family protein - - - 0.0000000001013 69.0
YYD3_k127_6868939_4 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.00003674 54.0
YYD3_k127_690697_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 570.0
YYD3_k127_690697_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000002087 77.0
YYD3_k127_690697_2 Forkhead associated domain - - - 0.000000002592 67.0
YYD3_k127_690697_3 Lactonase, 7-bladed beta-propeller K08884,K12132 - 2.7.11.1 0.00004346 52.0
YYD3_k127_697082_0 radical SAM domain protein - - - 4.404e-273 855.0
YYD3_k127_697082_1 PFAM Amidohydrolase 3 - - - 7.726e-198 631.0
YYD3_k127_697082_10 NPCBM K07019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001325 274.0
YYD3_k127_697082_11 methyltransferase - - - 0.000000000000000000000000000000000000000000981 167.0
YYD3_k127_697082_12 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000009887 169.0
YYD3_k127_697082_13 calcium- and calmodulin-responsive adenylate cyclase activity K01113,K13735,K20276 - 3.1.3.1 0.00000000000000000000000000000000000000003112 177.0
YYD3_k127_697082_14 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000003157 161.0
YYD3_k127_697082_15 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K07019 - - 0.000000000000000000000000000000000000002697 168.0
YYD3_k127_697082_16 Beta galactosidase small chain K01190 - 3.2.1.23 0.000000000000000000000000000000000000006345 167.0
YYD3_k127_697082_17 -O-antigen - - - 0.00000000000000000000000000000000000008939 158.0
YYD3_k127_697082_18 beta-galactosidase activity K07407 - 3.2.1.22 0.0000000000000000000000000000000000001239 162.0
YYD3_k127_697082_19 Alpha galactosidase A K07407 - 3.2.1.22 0.0000000000000000000000000000000000001635 161.0
YYD3_k127_697082_2 COG2133 Glucose sorbosone dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 488.0
YYD3_k127_697082_20 TonB-dependent Receptor Plug Domain - - - 0.00000000000000000000000000000000002539 141.0
YYD3_k127_697082_21 Glycoside hydrolase 97 K01187 - 3.2.1.20 0.00000000000000000000000000000000003686 154.0
YYD3_k127_697082_22 - - - - 0.00000000000000000000006764 111.0
YYD3_k127_697082_23 Staphylococcal nuclease homologues K01174,K07038 - 3.1.31.1 0.000003768 55.0
YYD3_k127_697082_3 Glycosyltransferase, group 1 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005023 378.0
YYD3_k127_697082_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 359.0
YYD3_k127_697082_5 H( )-stimulated, divalent metal cation uptake system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009153 351.0
YYD3_k127_697082_6 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 357.0
YYD3_k127_697082_7 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 345.0
YYD3_k127_697082_8 6-phosphogluconolactonase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000519 290.0
YYD3_k127_697082_9 Domain of unknown function (DUF4347) K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003848 269.0
YYD3_k127_697439_0 Glycosyl transferase family 2 K20534 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 351.0
YYD3_k127_697439_1 TIGRFAM GTP cyclohydrolase I K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000783 264.0
YYD3_k127_697439_10 Cupin 2, conserved barrel domain protein - - - 0.00005057 48.0
YYD3_k127_697439_11 TonB-dependent receptor - - - 0.00005438 54.0
YYD3_k127_697439_2 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000002116 241.0
YYD3_k127_697439_3 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000194 211.0
YYD3_k127_697439_4 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000327 212.0
YYD3_k127_697439_5 - - - - 0.0000000000000000000000000000000000000000000000000101 194.0
YYD3_k127_697439_6 - - - - 0.00000000000000000000000000000006776 130.0
YYD3_k127_697439_7 TonB-dependent receptor K16089 - - 0.0000000000000001013 95.0
YYD3_k127_697439_8 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.00000000002268 68.0
YYD3_k127_697439_9 efflux transmembrane transporter activity K02004 - - 0.000006013 48.0
YYD3_k127_734503_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006434 620.0
YYD3_k127_734503_1 DNA ligase K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 572.0
YYD3_k127_734503_2 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004295 307.0
YYD3_k127_734503_3 Protein of unknown function (DUF1569) - - - 0.00000000000000000000000000000000000000005337 159.0
YYD3_k127_734503_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000001037 147.0
YYD3_k127_734503_5 - - - - 0.00000000000000000000000000000005742 136.0
YYD3_k127_734503_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000004475 73.0
YYD3_k127_734503_7 PQQ enzyme repeat K00117 - 1.1.5.2 0.00000000002823 68.0
YYD3_k127_739268_0 - - - - 3.668e-203 644.0
YYD3_k127_739268_1 Protein of unknown function (DUF418) K07148 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 334.0
YYD3_k127_739268_2 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006091 278.0
YYD3_k127_739268_3 Dioxygenase - - - 0.00000000000000000000000000000000000000000000000004955 188.0
YYD3_k127_743396_0 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004656 422.0
YYD3_k127_812169_0 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 382.0
YYD3_k127_812169_1 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 331.0
YYD3_k127_812169_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005315 293.0
YYD3_k127_812169_3 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008085 289.0
YYD3_k127_812169_4 protein kinase related protein - - - 0.00000000000000000000000000000000000000000000004552 178.0
YYD3_k127_812169_5 - K02172 - - 0.0000000000000000000000000000001683 136.0
YYD3_k127_812169_6 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000005828 128.0
YYD3_k127_812169_7 Carboxypeptidase regulatory-like domain - - - 0.00001781 51.0
YYD3_k127_820085_0 - - - - 4.601e-200 627.0
YYD3_k127_820085_1 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 314.0
YYD3_k127_820085_2 histone H2A K63-linked ubiquitination K01768,K03220,K10914 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000002598 211.0
YYD3_k127_820085_3 Alcohol dehydrogenase GroES-like domain K00121 - 1.1.1.1,1.1.1.284 0.000000000000000000000000000000000000000000000002876 190.0
YYD3_k127_820085_4 - - - - 0.000000000000000000000000000000001951 143.0
YYD3_k127_820085_5 Alpha beta hydrolase - - - 0.000000000000000002481 93.0
YYD3_k127_820085_6 MacB-like periplasmic core domain K02004 - - 0.00003745 46.0
YYD3_k127_822320_0 MacB-like periplasmic core domain - - - 2.378e-285 900.0
YYD3_k127_822320_1 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 582.0
YYD3_k127_822320_11 Glycosyl hydrolases family 43 - - - 0.000000009947 58.0
YYD3_k127_822320_2 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 392.0
YYD3_k127_822320_3 gluconolactonase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009669 352.0
YYD3_k127_822320_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 298.0
YYD3_k127_822320_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005692 254.0
YYD3_k127_822320_6 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000005543 241.0
YYD3_k127_822320_7 Protein of unknown function (DUF3014) - - - 0.0000000000000000000000000000000009908 141.0
YYD3_k127_822320_8 MOSC N-terminal beta barrel domain K07140 - - 0.0000000000000000000000000000009096 123.0
YYD3_k127_822320_9 Cold shock protein domain - - - 0.000000000000215 79.0
YYD3_k127_848771_0 phosphorelay signal transduction system K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003204 526.0
YYD3_k127_848771_1 Multi-sensor signal transduction histidine kinase K07710 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 331.0
YYD3_k127_848771_2 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 319.0
YYD3_k127_848771_3 membrane organization K07277,K09800 - - 0.0000000000000000000000000000000000000000000008154 192.0
YYD3_k127_848771_4 Biotin-requiring enzyme - - - 0.00000000000000002356 83.0
YYD3_k127_848771_5 PFAM CAAX amino terminal protease family K07052 - - 0.0002682 51.0
YYD3_k127_85632_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000002736 256.0
YYD3_k127_85632_1 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000004881 181.0
YYD3_k127_85632_2 - - - - 0.000000000000000000000000001389 122.0
YYD3_k127_85632_3 Domain of unknown function (DUF4136) - - - 0.00000000000000000000000002173 117.0
YYD3_k127_85632_4 Surface antigen - - - 0.00000000000000000359 98.0
YYD3_k127_85632_5 Belongs to the ompA family K03640 - - 0.0000000000000001096 93.0
YYD3_k127_85632_6 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K02030 - - 0.00000000000000077 80.0
YYD3_k127_85632_7 Domain of unknown function (DUF4136) - - - 0.0000002589 60.0
YYD3_k127_865439_0 major pilin protein fima - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000471 415.0
YYD3_k127_865439_1 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.00000000000000000000000316 108.0
YYD3_k127_865439_2 von Willebrand factor, type A K07114 - - 0.0001725 52.0
YYD3_k127_880667_0 DNA topological change K03168 - 5.99.1.2 2.937e-303 956.0
YYD3_k127_880667_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 2.922e-213 695.0
YYD3_k127_880667_10 - - - - 0.0000000000000000000000000000007437 132.0
YYD3_k127_880667_11 peroxiredoxin activity - - - 0.000000000000000000000000000001122 125.0
YYD3_k127_880667_12 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000007335 93.0
YYD3_k127_880667_13 Pyrrolo-quinoline quinone - - - 0.0006651 43.0
YYD3_k127_880667_2 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 601.0
YYD3_k127_880667_3 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 588.0
YYD3_k127_880667_4 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005477 551.0
YYD3_k127_880667_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 550.0
YYD3_k127_880667_6 response to abiotic stimulus K06867 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006318 470.0
YYD3_k127_880667_7 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 386.0
YYD3_k127_880667_8 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000001313 260.0
YYD3_k127_880667_9 Histidine kinase-like ATPase domain K01338,K04757,K06379,K08282,K17752 - 2.7.11.1,3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000003755 234.0
YYD3_k127_891268_0 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 598.0
YYD3_k127_891268_1 acr, cog1565 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003633 344.0
YYD3_k127_891268_10 adenosylhomocysteine nucleosidase activity K01239,K01243,K03716 - 3.2.2.1,3.2.2.9,4.1.99.14 0.00000000000003361 77.0
YYD3_k127_891268_2 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 327.0
YYD3_k127_891268_3 protein-(glutamine-N5) methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005848 313.0
YYD3_k127_891268_4 Methylene-tetrahydrofolate reductase C terminal K00297 - 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000005538 279.0
YYD3_k127_891268_5 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000001174 148.0
YYD3_k127_891268_6 short-chain dehydrogenase - - - 0.000000000000000000000000000000000003878 140.0
YYD3_k127_891268_7 sequence-specific DNA binding K07726 - - 0.000000000000000000000000000001198 127.0
YYD3_k127_891268_8 Alpha/beta hydrolase family - - - 0.00000000000000000000000009204 116.0
YYD3_k127_891268_9 - - - - 0.0000000000000001467 84.0
YYD3_k127_908455_0 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006849 331.0
YYD3_k127_908455_1 enterobactin catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 300.0
YYD3_k127_908455_2 - - - - 0.000000566 54.0
YYD3_k127_913365_0 TIGRFAM Small GTP-binding protein K06883 - - 0.0000000000000000000000000000000000000000000000000000003037 205.0
YYD3_k127_913365_1 Histidine kinase - - - 0.00000000000001744 81.0
YYD3_k127_913365_2 YceI-like domain - - - 0.0003633 50.0
YYD3_k127_915625_0 Formylmethanofuran dehydrogenase subunit A K00200 - 1.2.7.12 1.168e-231 729.0
YYD3_k127_915625_1 Molybdopterin oxidoreductase K00201 - 1.2.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 438.0
YYD3_k127_915625_10 - - - - 0.00000000000007176 77.0
YYD3_k127_915625_11 PFAM molydopterin dinucleotide-binding region K00203 GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0048037,GO:0051536,GO:0051540,GO:0055114 1.2.7.12 0.000000000004355 72.0
YYD3_k127_915625_2 selenocysteine insertion sequence binding K03833 GO:0000049,GO:0000166,GO:0001514,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009069,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016259,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031326,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034641,GO:0034645,GO:0035368,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 439.0
YYD3_k127_915625_3 converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004671 420.0
YYD3_k127_915625_4 L-seryl-tRNASec selenium transferase activity K01042 GO:0003674,GO:0003824,GO:0004125,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016070,GO:0016259,GO:0016260,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0019752,GO:0019842,GO:0030170,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0090304,GO:0097056,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 399.0
YYD3_k127_915625_5 Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT) K00672 GO:0003674,GO:0003824,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0015947,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0030270,GO:0043446,GO:0044237,GO:0044281,GO:0071704 2.3.1.101 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 357.0
YYD3_k127_915625_6 formylmethanofuran dehydrogenase subunit C K00202 - 1.2.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003031 293.0
YYD3_k127_915625_7 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000005368 143.0
YYD3_k127_915625_8 PFAM TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000002508 118.0
YYD3_k127_915625_9 - - - - 0.0000000000000000001509 100.0
YYD3_k127_961483_0 Sodium/calcium exchanger protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 559.0
YYD3_k127_961483_1 NapC/NirT cytochrome c family, N-terminal region - GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0045333,GO:0055114 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 337.0
YYD3_k127_961483_10 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.9.3.1 0.00002014 52.0
YYD3_k127_961483_2 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 318.0
YYD3_k127_961483_3 VIT family - - - 0.000000000000000000000000000000000000000000000000000000000159 222.0
YYD3_k127_961483_4 FCD - - - 0.00000000000000000000000000000000000000000000000000001457 199.0
YYD3_k127_961483_5 - - - - 0.000000000000000000000000000000000000000000000624 175.0
YYD3_k127_961483_6 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000001243 178.0
YYD3_k127_961483_7 Putative outer membrane beta-barrel porin, MtrB/PioB K22110 - - 0.000000000000000000000000000000000000246 162.0
YYD3_k127_961483_8 TIGRFAM cytochrome C family protein - - - 0.00000000000000000000000000000000001064 137.0
YYD3_k127_961483_9 - - - - 0.000000000000000002149 96.0
YYD3_k127_982041_0 Catalyzes the formation of succinate from succinate semialdehyde K00135 GO:0000166,GO:0001505,GO:0003674,GO:0003824,GO:0004777,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006105,GO:0006520,GO:0006536,GO:0006538,GO:0006540,GO:0006807,GO:0008150,GO:0008152,GO:0009013,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009448,GO:0009450,GO:0009987,GO:0016054,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0019752,GO:0032787,GO:0036094,GO:0042133,GO:0042135,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.2.1.16,1.2.1.20,1.2.1.79 6.11e-245 765.0
YYD3_k127_982041_1 proline dipeptidase activity - - - 2.384e-196 621.0
YYD3_k127_982041_2 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K21417 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 494.0
YYD3_k127_982041_3 Dehydrogenase E1 component K21416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 401.0
YYD3_k127_982041_4 PFAM 6-phosphogluconate dehydrogenase NAD-binding K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002253 351.0
YYD3_k127_982041_5 Catalytic domain of components of various dehydrogenase complexes K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008261 302.0
YYD3_k127_982041_6 Protein of unknown function (DUF3237) - - - 0.0000000000000000000000000000001013 136.0
YYD3_k127_982041_7 Bacterial-like globin K06886 - - 0.0000000000000000000002375 108.0
YYD3_k127_996160_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 9.505e-261 814.0
YYD3_k127_996160_1 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006951 346.0
YYD3_k127_996160_2 peptidyl-lysine modification to peptidyl-hypusine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 333.0
YYD3_k127_996160_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000006053 199.0