logo

Overview

ID MAG04650
Name YYD3_bin.21
Sample SMP0126
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Terriglobia
Order 20CM-2-55-15
Family 20CM-2-55-15
Genus DASTBJ01
Species DASTBJ01 sp035712125
Assembly information
Completeness (%) 77.45
Contamination (%) 3.73
GC content (%) 57.0
N50 (bp) 7,622
Genome size (bp) 3,514,024

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3177

Gene name Description KEGG GOs EC E-value Score Sequence
YYD3_k127_1004449_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 596.0
YYD3_k127_1004449_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001999 421.0
YYD3_k127_1004449_2 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000000000000001076 232.0
YYD3_k127_1055059_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 447.0
YYD3_k127_1055059_1 Domain of unknown function (DUF3488) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 328.0
YYD3_k127_1055059_2 Protein of unknown function DUF58 - - - 0.000000000000005022 80.0
YYD3_k127_1057234_0 alpha amylase, catalytic region - - - 3.058e-233 729.0
YYD3_k127_1057234_1 FAD linked oxidase - - - 1.776e-214 679.0
YYD3_k127_1057234_2 Haemolysin-type calcium-binding repeat (2 copies) - - - 1.69e-202 641.0
YYD3_k127_1057234_3 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 298.0
YYD3_k127_1057234_4 Putative esterase K07214 - - 0.000000008464 69.0
YYD3_k127_1057234_5 Phosphotransferase enzyme family - - - 0.000002302 55.0
YYD3_k127_1076669_0 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005137 578.0
YYD3_k127_1076669_1 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003367 258.0
YYD3_k127_1076669_2 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000007741 170.0
YYD3_k127_1076669_3 Methyltransferase domain - - - 0.000000000000000000000001897 115.0
YYD3_k127_1076669_4 Protein of unknown function (DUF454) K09790 - - 0.00000000000001925 76.0
YYD3_k127_1076669_5 Fatty acid desaturase - - - 0.0000000000908 73.0
YYD3_k127_1076669_6 Domain of Unknown Function (DUF748) - - - 0.00001984 53.0
YYD3_k127_1090423_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000001083 205.0
YYD3_k127_1090423_1 domain protein K14194 - - 0.00000000000000000000000000000000000000000000002529 191.0
YYD3_k127_1090423_2 - - - - 0.0000000000000000000386 98.0
YYD3_k127_1090423_3 lactoylglutathione lyase activity - - - 0.00000000004244 70.0
YYD3_k127_1090423_4 Hemerythrin - - - 0.0000000002079 64.0
YYD3_k127_1090423_5 alpha/beta hydrolase fold - - - 0.00009502 54.0
YYD3_k127_1090757_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016772,GO:0019200,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006505 301.0
YYD3_k127_1090757_1 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.0000000000000000000000000000000000002542 153.0
YYD3_k127_1090757_2 Glycosyl transferase 4-like domain K03525 - 2.7.1.33 0.0000000000000000000000000005396 126.0
YYD3_k127_1090757_3 Trm112p-like protein K09791 - - 0.00000000000000000009651 89.0
YYD3_k127_1094869_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 401.0
YYD3_k127_1094869_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 296.0
YYD3_k127_1094869_2 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000002769 225.0
YYD3_k127_1094869_3 Glycosyl transferase, family 2 K12984 - - 0.0000000000000000000000000000000000000000000000000000000386 202.0
YYD3_k127_1094869_4 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000004731 143.0
YYD3_k127_1094869_5 zinc metalloprotease K11749 - - 0.00000001026 57.0
YYD3_k127_1108723_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0001968,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005518,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035375,GO:0042866,GO:0043236,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050840,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 562.0
YYD3_k127_1108723_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 542.0
YYD3_k127_1108723_2 Deoxyhypusine synthase K00809 - 2.5.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 504.0
YYD3_k127_1108723_3 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000003197 237.0
YYD3_k127_1108723_4 Putative cyclase K07130 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000004254 198.0
YYD3_k127_1108723_5 PFAM Xylose isomerase - - - 0.00000000000000000000000001364 122.0
YYD3_k127_1108723_6 domain protein - - - 0.00004161 55.0
YYD3_k127_1161193_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 528.0
YYD3_k127_1161193_1 4Fe-4S dicluster domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009418 374.0
YYD3_k127_1161193_2 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007468 357.0
YYD3_k127_1161193_3 PFAM Type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006883 334.0
YYD3_k127_1161193_4 Haem-degrading - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002915 281.0
YYD3_k127_1161193_5 FAD binding domain K11472 - - 0.00000000000000000000000000000000000000000000000201 188.0
YYD3_k127_1161193_6 - - - - 0.0000000000000000000000000000000000000003912 158.0
YYD3_k127_1161193_7 heat shock protein binding K03686 - - 0.00000000000005355 79.0
YYD3_k127_1161193_8 SMART Tetratricopeptide - - - 0.0000000001748 70.0
YYD3_k127_1161193_9 Belongs to the DNA polymerase type-C family. DnaE2 subfamily K14162 - 2.7.7.7 0.000000009497 59.0
YYD3_k127_1163075_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 492.0
YYD3_k127_1186546_0 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002587 253.0
YYD3_k127_1186546_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000005061 228.0
YYD3_k127_1186546_2 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000002961 196.0
YYD3_k127_1186546_3 YCII-related domain - - - 0.0000000000000000000000000000000000004065 143.0
YYD3_k127_1186546_4 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide - - - 0.000000000000000000000000000000001224 137.0
YYD3_k127_1186546_5 - - - - 0.00000000000000000000000138 114.0
YYD3_k127_1186546_6 - - - - 0.0000000001108 69.0
YYD3_k127_1194280_0 FMN binding K00104,K16422 - 1.1.3.15,1.1.3.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004041 405.0
YYD3_k127_1194280_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005629 406.0
YYD3_k127_1194280_2 Protein of unknown function (DUF2585) - - - 0.00000000000000000000000000000000000000000000000004106 186.0
YYD3_k127_1194280_3 Carboxylesterase family - - - 0.000000000000000000000000000000000000000003138 167.0
YYD3_k127_1194280_4 Large family of predicted nucleotide-binding domains - - - 0.00000000000000000000000000000007142 128.0
YYD3_k127_1194280_5 positive regulation of growth - - - 0.0000000000001404 72.0
YYD3_k127_1210698_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 5.941e-285 890.0
YYD3_k127_1210698_1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009317 562.0
YYD3_k127_1210698_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000001055 241.0
YYD3_k127_1210698_3 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000007449 135.0
YYD3_k127_1210698_4 - - - - 0.0005045 47.0
YYD3_k127_1220264_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K07303 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000005139 232.0
YYD3_k127_1220264_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000009841 256.0
YYD3_k127_1220264_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000137 202.0
YYD3_k127_1220264_3 - - - - 0.00000000000000000000000000000005641 136.0
YYD3_k127_1220264_4 - - - - 0.00000000000000001051 87.0
YYD3_k127_1230843_0 Belongs to the PdaD family K02626 - 4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000001674 260.0
YYD3_k127_1230843_1 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002393 237.0
YYD3_k127_1230843_2 Periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000001513 125.0
YYD3_k127_1230843_3 imidazolonepropionase activity K07221 - - 0.0000000000004198 72.0
YYD3_k127_1232527_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 408.0
YYD3_k127_1232527_1 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005761 312.0
YYD3_k127_1232527_2 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.0000000000000000000000000004898 117.0
YYD3_k127_1232527_3 UreD urease accessory protein K03190 - - 0.000000000000000000000000522 115.0
YYD3_k127_1232527_4 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.000000000000000000000008387 109.0
YYD3_k127_1232527_5 UreE urease accessory protein, N-terminal domain K03187 - - 0.00000000000005432 78.0
YYD3_k127_1232527_6 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.000000006531 65.0
YYD3_k127_1232527_7 COG4422 Bacteriophage protein gp37 - - - 0.00000006636 55.0
YYD3_k127_1233619_0 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000193 180.0
YYD3_k127_1233619_1 Calcineurin-like phosphoesterase K07098 - - 0.0000000000000000000000000000000000003022 152.0
YYD3_k127_1233619_2 - - - - 0.00000000000000000000005095 103.0
YYD3_k127_1233619_3 - - - - 0.00000000000000008444 93.0
YYD3_k127_1233619_4 DinB family - - - 0.0000000000000001785 82.0
YYD3_k127_123497_0 Domain of unknown function (DUF1998) K06877 - - 4.636e-279 884.0
YYD3_k127_123497_1 RNase_H superfamily K07502 - - 0.000000000000000000000000000000000000000000000000000000000000448 226.0
YYD3_k127_123497_2 Zincin-like metallopeptidase - - - 0.0000000000000000000000005804 115.0
YYD3_k127_1246035_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000218 257.0
YYD3_k127_1246035_1 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.00000000000000000000000000000000002056 142.0
YYD3_k127_1246035_2 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000003726 113.0
YYD3_k127_1248650_0 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 299.0
YYD3_k127_1248650_1 PFAM Peptidase M56, BlaR1 - - - 0.000000000000000000000000000000000000000000000000000000000000704 231.0
YYD3_k127_1248650_2 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000000000000000000000006677 152.0
YYD3_k127_1248650_3 - - - - 0.000000000000000000000000000000001284 136.0
YYD3_k127_1248650_4 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000001865 94.0
YYD3_k127_1248650_5 COG1520 FOG WD40-like repeat - - - 0.00000000000005541 75.0
YYD3_k127_1248650_6 - K02172 - - 0.00000000002853 76.0
YYD3_k127_1253086_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003808 295.0
YYD3_k127_1253086_1 gluconolactonase activity K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005255 291.0
YYD3_k127_1253086_2 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000000000001163 203.0
YYD3_k127_1253086_3 Thioredoxin-like - - - 0.00000000000000000000004094 116.0
YYD3_k127_1253086_4 Protein tyrosine kinase - - - 0.00000000000000000001178 107.0
YYD3_k127_1253086_5 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000001902 87.0
YYD3_k127_1253086_6 enterobactin catabolic process - - - 0.000000008287 57.0
YYD3_k127_125405_0 Mismatch repair ATPase (MutS family) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005587 540.0
YYD3_k127_1286113_0 transcription factor binding K02584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 550.0
YYD3_k127_1286113_1 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003659 398.0
YYD3_k127_1286113_2 HlyD family secretion protein K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005752 328.0
YYD3_k127_1286113_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.00000000000000000000000000000000004445 137.0
YYD3_k127_1286113_4 Periplasmic or secreted lipoprotein - - - 0.00000000000000000000000000003421 130.0
YYD3_k127_1286113_6 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000002669 91.0
YYD3_k127_1291754_0 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004589 398.0
YYD3_k127_1291754_1 Transcriptional regulator, LysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 352.0
YYD3_k127_1291754_11 Peptidase family S51 - - - 0.000002731 53.0
YYD3_k127_1291754_12 Protein of unknown function (DUF1573) - - - 0.00005363 55.0
YYD3_k127_1291754_13 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0001058 55.0
YYD3_k127_1291754_15 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0008163 48.0
YYD3_k127_1291754_2 Bacterial transcriptional repressor C-terminal - - - 0.00000000000000000000000000000000000000000009279 166.0
YYD3_k127_1291754_3 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000008855 140.0
YYD3_k127_1291754_5 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.000000000000000000000000001162 119.0
YYD3_k127_1291754_6 phosphatidylinositol metabolic process K00728 - 2.4.1.109 0.0000000000000000000000008348 118.0
YYD3_k127_1291754_7 Chlorophyllase enzyme - - - 0.00000000000000009966 92.0
YYD3_k127_1291754_8 - - - - 0.0000000000000001567 81.0
YYD3_k127_1291754_9 hemerythrin HHE cation binding domain - - - 0.000000000000004719 79.0
YYD3_k127_1303497_0 Aldehyde dehydrogenase family K00128,K00146 - 1.2.1.3,1.2.1.39 1.346e-241 754.0
YYD3_k127_1303497_1 DNA topological change K03168 - 5.99.1.2 9.676e-227 726.0
YYD3_k127_1303497_10 lyase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006338 271.0
YYD3_k127_1303497_11 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004776 245.0
YYD3_k127_1303497_12 Redox protein regulator of disulfide bond formation K06889,K07397 - - 0.000000000000000000000000000000000000000000000004981 175.0
YYD3_k127_1303497_13 2-keto-4-pentenoate hydratase - - - 0.0000000000000000000000000000000000001361 153.0
YYD3_k127_1303497_2 ABC transporter transmembrane region K06147,K18893 - - 1.635e-208 671.0
YYD3_k127_1303497_3 pyrroloquinoline quinone binding - - - 7.102e-202 642.0
YYD3_k127_1303497_4 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 458.0
YYD3_k127_1303497_5 O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 427.0
YYD3_k127_1303497_6 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 394.0
YYD3_k127_1303497_7 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 380.0
YYD3_k127_1303497_8 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009925 358.0
YYD3_k127_1303497_9 ankyrin repeat K15503 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005246 342.0
YYD3_k127_1312604_0 serine-type peptidase activity - - - 1.904e-205 659.0
YYD3_k127_1317275_0 PFAM FAD dependent oxidoreductase - - - 1.497e-195 622.0
YYD3_k127_1317275_1 4-phosphoerythronate dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 291.0
YYD3_k127_1317275_10 Rhomboid family - - - 0.0000000000000000000000000000000007857 138.0
YYD3_k127_1317275_2 with different specificities (related to short-chain alcohol K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002426 273.0
YYD3_k127_1317275_3 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002343 264.0
YYD3_k127_1317275_4 dUTPase K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000005388 245.0
YYD3_k127_1317275_5 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006545 247.0
YYD3_k127_1317275_6 Flavodoxin-like fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000002047 235.0
YYD3_k127_1317275_7 Belongs to the Dps family K03594 - 1.16.3.1 0.0000000000000000000000000000000000000000000000000000000000001916 216.0
YYD3_k127_1317275_8 bacterial (prokaryotic) histone like domain K03530 - - 0.000000000000000000000000000000000000004164 147.0
YYD3_k127_1317275_9 Transcription factor zinc-finger - - - 0.000000000000000000000000000000000006332 146.0
YYD3_k127_1346496_0 Highly conserved protein containing a thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 447.0
YYD3_k127_1346496_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003149 270.0
YYD3_k127_1346496_2 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.00000000000000000008151 90.0
YYD3_k127_1359943_0 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 315.0
YYD3_k127_1359943_1 domain protein K14194 - - 0.00000000000000000000000000000000000000000000000000009491 207.0
YYD3_k127_1359943_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000005791 175.0
YYD3_k127_1359943_3 Glyoxalase-like domain K06996 - - 0.0000000000000000007832 91.0
YYD3_k127_1359943_4 Heavy-metal resistance - - - 0.000000000003304 75.0
YYD3_k127_1359943_6 DNA-templated transcription, initiation - - - 0.0005938 46.0
YYD3_k127_1368022_0 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 556.0
YYD3_k127_1368022_1 PFAM Cytochrome b b6 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005357 415.0
YYD3_k127_1368022_2 Cytochrome b(C-terminal)/b6/petD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 414.0
YYD3_k127_1368022_3 Rieske [2Fe-2S] domain K02636 - 1.10.9.1 0.00000000000000000000000000000000000000000000000000000000001283 214.0
YYD3_k127_1368022_4 Cytochrome oxidase assembly protein K02259 - - 0.0000000000000000000000000000000000000000000000000000000204 209.0
YYD3_k127_1368022_5 Polysaccharide lyase family 4, domain II - - - 0.000000000000000000000000000000000000000000001458 174.0
YYD3_k127_1368022_6 CoA-transferase family III - - - 0.000000000000000000000000000000000000000003318 160.0
YYD3_k127_1368022_7 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008495,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0030312,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0048033,GO:0048034,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.000000000000000000000000000000001271 138.0
YYD3_k127_1368022_8 HEAT repeats - - - 0.000008677 57.0
YYD3_k127_1389261_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 517.0
YYD3_k127_1389261_1 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 416.0
YYD3_k127_1389261_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000002438 237.0
YYD3_k127_1389261_3 DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000003254 220.0
YYD3_k127_1389261_4 alpha/beta hydrolase fold - - - 0.0000000000000000000000004455 109.0
YYD3_k127_1408299_0 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005453 445.0
YYD3_k127_1408299_1 Transduction Histidine Kinase K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000007697 205.0
YYD3_k127_1408299_2 Periplasmic or secreted lipoprotein - - - 0.00000000000000000000000008972 118.0
YYD3_k127_1408299_3 RNA recognition motif - - - 0.000000000000000002809 87.0
YYD3_k127_1408299_4 protein conserved in bacteria - - - 0.000001304 58.0
YYD3_k127_1431976_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 454.0
YYD3_k127_1431976_1 Belongs to the MlaE permease family K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001363 281.0
YYD3_k127_1431976_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000001342 161.0
YYD3_k127_1449575_0 Transposase K07494 - - 0.00000000000000008903 89.0
YYD3_k127_1449575_1 Transposase - - - 0.000000000000009257 81.0
YYD3_k127_1449575_2 cheY-homologous receiver domain - - - 0.0000000002195 64.0
YYD3_k127_146412_0 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 440.0
YYD3_k127_146412_1 CotH kinase protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805 435.0
YYD3_k127_146412_2 CotH kinase protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006736 421.0
YYD3_k127_146412_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003549 261.0
YYD3_k127_146412_4 Domain of unknown function (DUF4956) - - - 0.000000000000000000000000000000006842 137.0
YYD3_k127_146412_5 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000000000004138 111.0
YYD3_k127_146412_6 Belongs to the glutaminase family K01425 - 3.5.1.2 0.0000000000000000006558 88.0
YYD3_k127_146412_7 VTC domain - - - 0.000000000000000000838 95.0
YYD3_k127_1471709_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000225 263.0
YYD3_k127_1471709_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000001812 219.0
YYD3_k127_1471709_2 Biotin/lipoate A/B protein ligase family K03800 GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016415,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 6.3.1.20 0.00000000000000000000000000000000000000000000003051 179.0
YYD3_k127_1471709_3 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000009523 148.0
YYD3_k127_1471709_4 Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner K03687 - - 0.000000000000000000000000000000007234 134.0
YYD3_k127_1485513_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 7.756e-260 820.0
YYD3_k127_1485513_1 Cytochrome c K00413 - - 0.000000000000000000002428 100.0
YYD3_k127_1485513_2 chaperone-mediated protein folding - - - 0.00000000004526 63.0
YYD3_k127_1493633_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 475.0
YYD3_k127_1493633_1 MOFRL family K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009568 439.0
YYD3_k127_1493633_2 Inositol monophosphatase K01082,K01092 GO:0003674,GO:0003824,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0042578,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25,3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000001395 261.0
YYD3_k127_1493633_3 Sodium:sulfate symporter transmembrane region K14445 - - 0.00000000000000000000000000000000000000000000000000000000000000000001552 243.0
YYD3_k127_1493633_4 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 0.0000000000000000000000000000000000000000000000000000000000009026 218.0
YYD3_k127_1493633_5 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000002407 184.0
YYD3_k127_1493633_6 Tetratricopeptide repeat - - - 0.00000000000002434 85.0
YYD3_k127_1493633_7 Methionine synthase B12-binding module cap domain protein K00548,K15023 - 2.1.1.13,2.1.1.258 0.0000000000001393 70.0
YYD3_k127_1493633_8 O-linked N-acetylglucosamine transferase SPINDLY family - - - 0.000000001421 69.0
YYD3_k127_1508292_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378,K13380 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003703 291.0
YYD3_k127_1508292_1 conserved protein, contains double-stranded beta-helix domain - - - 0.00000000000000000000003776 103.0
YYD3_k127_1508292_2 PEP-CTERM motif - - - 0.000000625 58.0
YYD3_k127_1512032_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009333 501.0
YYD3_k127_1512032_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 422.0
YYD3_k127_1512032_10 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K00969,K09710 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0044087,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113 2.7.7.18 0.0000000000000000000000000006395 119.0
YYD3_k127_1512032_11 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000004747 108.0
YYD3_k127_1512032_12 nuclease activity - - - 0.00000001839 62.0
YYD3_k127_1512032_2 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006 306.0
YYD3_k127_1512032_3 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000137 261.0
YYD3_k127_1512032_4 Aminotransferase K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000002674 204.0
YYD3_k127_1512032_5 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000003449 171.0
YYD3_k127_1512032_6 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000000000001475 142.0
YYD3_k127_1512032_7 PFAM Phosphoribosyltransferase - - - 0.0000000000000000000000000000000000001539 149.0
YYD3_k127_1512032_8 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.000000000000000000000000000000005308 136.0
YYD3_k127_1512032_9 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000003189 127.0
YYD3_k127_1518826_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 454.0
YYD3_k127_1518826_1 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 359.0
YYD3_k127_1518826_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008414 321.0
YYD3_k127_1518826_3 dehydrogenase domain of multifunctional non-ribosomal peptide - - - 0.000000000000000000000000000000000000000000000000001155 198.0
YYD3_k127_1518826_4 Protein of unknown function (DUF1572) - - - 0.00000000000000000000000000000000000002857 150.0
YYD3_k127_1518826_5 Glycosyltransferase 28 domain K03715 - 2.4.1.46 0.00000000000000000000000003782 121.0
YYD3_k127_1547072_0 class II (D K K01876,K09759,K22503 - 6.1.1.12,6.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005626 561.0
YYD3_k127_1547072_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 360.0
YYD3_k127_1547072_2 Cytochrome c mono- and diheme variants - - - 0.00000000000000000000000000000000000000000000008972 173.0
YYD3_k127_1547072_3 domain protein K14194 - - 0.0000000000000000000000000000003535 135.0
YYD3_k127_1549852_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 344.0
YYD3_k127_1549852_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 319.0
YYD3_k127_1549852_10 TIGRFAM outer membrane protein assembly complex, YaeT protein K07277 - - 0.00004116 48.0
YYD3_k127_1549852_2 Protein of unknown function (DUF1009) K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003962 317.0
YYD3_k127_1549852_3 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000395 287.0
YYD3_k127_1549852_4 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002513 281.0
YYD3_k127_1549852_5 Stage II sporulation protein K06381 - - 0.0000000000000000000000000000000000000000000000000000001345 216.0
YYD3_k127_1549852_6 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000004188 165.0
YYD3_k127_1549852_7 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.00000000000000000000004475 100.0
YYD3_k127_1549852_8 TonB C terminal - - - 0.00000000000000000002451 103.0
YYD3_k127_1549852_9 outer membrane chaperone Skp (OmpH) K06142 - - 0.00000000125 68.0
YYD3_k127_1557081_0 Lysin motif K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 417.0
YYD3_k127_1557081_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000000000000001366 199.0
YYD3_k127_1557081_2 domain protein K14194 - - 0.0000000000000000000000000000000000000000000003372 189.0
YYD3_k127_1557081_3 HEAT repeats - - - 0.0000000000000000000001732 108.0
YYD3_k127_1557081_4 oxidoreductase activity - - - 0.0000001599 55.0
YYD3_k127_1557081_5 - - - - 0.00001705 54.0
YYD3_k127_1574090_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.049e-253 790.0
YYD3_k127_1574090_1 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 8.152e-213 668.0
YYD3_k127_1574090_10 -O-antigen K02847,K13009 - - 0.00000000000000000000000000000000002945 155.0
YYD3_k127_1574090_11 - - - - 0.00000000000000000000000000564 128.0
YYD3_k127_1574090_12 Glycosyl transferase 4-like domain - - - 0.000000000000000000000009911 116.0
YYD3_k127_1574090_13 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.00000000000000001881 94.0
YYD3_k127_1574090_14 Polysaccharide biosynthesis protein - - - 0.000000000001108 81.0
YYD3_k127_1574090_15 PFAM lipopolysaccharide biosynthesis - - - 0.0000000008748 71.0
YYD3_k127_1574090_2 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 486.0
YYD3_k127_1574090_3 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 354.0
YYD3_k127_1574090_4 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 325.0
YYD3_k127_1574090_5 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002696 296.0
YYD3_k127_1574090_6 glucose phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001049 290.0
YYD3_k127_1574090_7 Uncharacterised nucleotidyltransferase - - - 0.0000000000000000000000000000000000000000004845 174.0
YYD3_k127_1574090_8 Penicillinase repressor - - - 0.00000000000000000000000000000000000000002952 156.0
YYD3_k127_1574090_9 BlaR1 peptidase M56 - - - 0.00000000000000000000000000000000000009585 161.0
YYD3_k127_1597186_0 Belongs to the DNA polymerase type-C family. DnaE2 subfamily K14162 - 2.7.7.7 0.0 1197.0
YYD3_k127_1597186_1 Putative zinc-binding metallo-peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 382.0
YYD3_k127_1597186_2 Belongs to the TPP enzyme family K07004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002071 340.0
YYD3_k127_1597186_3 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000006445 148.0
YYD3_k127_1600390_0 4-hydroxyphenylacetate 3-hydroxylase C terminal - - - 6.684e-308 946.0
YYD3_k127_1600390_1 leucine-zipper of insertion element IS481 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009331 381.0
YYD3_k127_1600390_2 TLC ATP/ADP transporter K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001612 281.0
YYD3_k127_1600390_3 HupE / UreJ protein - - - 0.000000000000000000000000000000000002349 140.0
YYD3_k127_1605888_0 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004363 286.0
YYD3_k127_1605888_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0001268 44.0
YYD3_k127_1606802_0 Putative glucoamylase - - - 0.0 1734.0
YYD3_k127_1606802_1 beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 344.0
YYD3_k127_1609388_0 protein related to plant photosystem II stability assembly factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004315 406.0
YYD3_k127_1609388_1 Cytochrome P460 - - - 0.000000000000000000000000000000000000000000000000000000008006 205.0
YYD3_k127_1609388_2 dioxygenase activity K00477 - 1.14.11.18 0.000000000000000000000000000000000000003912 156.0
YYD3_k127_1609388_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.00000000000000000000000000000000002103 135.0
YYD3_k127_1609388_4 ThiS family K03636 - - 0.000000000000000000001432 98.0
YYD3_k127_1623502_0 DNA topoisomerase (ATP-hydrolyzing) K02470,K02622 - 5.99.1.3 6.538e-229 722.0
YYD3_k127_1634832_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000002319 65.0
YYD3_k127_1634832_1 YtxH-like protein - - - 0.00005941 48.0
YYD3_k127_1637750_0 Isochorismatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 320.0
YYD3_k127_1637750_1 Antibiotic biosynthesis monooxygenase - GO:0003674,GO:0003824 - 0.000000000000000000000000001194 115.0
YYD3_k127_1637750_2 alpha/beta hydrolase fold K01563,K22318 - 3.8.1.5 0.000000001734 58.0
YYD3_k127_1637750_3 Antibiotic biosynthesis monooxygenase K09932 - - 0.0000003157 54.0
YYD3_k127_1637750_4 Isochorismatase family - - - 0.0001028 47.0
YYD3_k127_1644108_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537,K01539 - 3.6.3.8,3.6.3.9 0.0 1243.0
YYD3_k127_1644108_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 558.0
YYD3_k127_1644108_2 Permease, YjgP YjgQ - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 435.0
YYD3_k127_1644108_3 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006715 375.0
YYD3_k127_1644108_4 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 378.0
YYD3_k127_1644108_5 Tyrosine recombinase XerD K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 315.0
YYD3_k127_1644108_6 ABC transporter, ATP-binding protein K06147 - - 0.0000000000000000000000000002477 115.0
YYD3_k127_1681027_0 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000006191 170.0
YYD3_k127_1681027_1 Haloacid dehalogenase-like hydrolase K07025,K20866 - 3.1.3.10 0.000000000000000000000000000004116 127.0
YYD3_k127_1681027_2 Smr domain - - - 0.000000000000000000000000000539 122.0
YYD3_k127_1681027_3 NAD synthase K01916 - 6.3.1.5 0.0000000000000000001944 90.0
YYD3_k127_1681027_4 Hfq protein K03666 - - 0.000000000000000002557 87.0
YYD3_k127_1681027_5 Pilus assembly protein PilX K02673 - - 0.000000001881 68.0
YYD3_k127_1681230_0 metallopeptidase activity K01993,K13408,K16922 - - 1.807e-226 722.0
YYD3_k127_1681230_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 2.899e-218 695.0
YYD3_k127_1681230_10 - - - - 0.00000000000000001994 96.0
YYD3_k127_1681230_11 outer membrane efflux protein - - - 0.00000000000000006926 94.0
YYD3_k127_1681230_12 - - - - 0.0000000004355 67.0
YYD3_k127_1681230_13 snoRNA binding - - - 0.00000000401 62.0
YYD3_k127_1681230_14 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00001187 54.0
YYD3_k127_1681230_2 PFAM Extradiol ring-cleavage dioxygenase class III protein subunit B K04099 - 1.13.11.57 2.42e-198 625.0
YYD3_k127_1681230_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 505.0
YYD3_k127_1681230_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005457 248.0
YYD3_k127_1681230_5 Peptidase, M16 K07263 - - 0.00000000000000000000000000000000000000000000003395 188.0
YYD3_k127_1681230_6 PepSY-associated TM region - - - 0.000000000000000000000000000000000000000000004478 178.0
YYD3_k127_1681230_7 Protein of unknown function (DUF3467) - - - 0.000000000000000000000000000001715 124.0
YYD3_k127_1681230_8 Ribosomal RNA adenine dimethylase - - - 0.000000000000000000000279 104.0
YYD3_k127_1681230_9 - - - - 0.0000000000000000003724 94.0
YYD3_k127_1687590_0 ABC-type multidrug transport system, ATPase and permease components K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 547.0
YYD3_k127_1687590_1 transmembrane transport K03442 - - 0.000000000000000000000000000000000000000000000008424 184.0
YYD3_k127_1687590_2 - - - - 0.000000000001709 77.0
YYD3_k127_1688950_0 peptidoglycan turnover K06958,K07102 GO:0000166,GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0006022,GO:0006040,GO:0006082,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009254,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0017076,GO:0019200,GO:0019752,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0046835,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901564 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007202 581.0
YYD3_k127_1688950_1 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009738 462.0
YYD3_k127_1688950_10 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000397 191.0
YYD3_k127_1688950_11 COG NOG14600 non supervised orthologous group - - - 0.0000000000000000000000000000000000000000000001035 169.0
YYD3_k127_1688950_12 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000000000004987 169.0
YYD3_k127_1688950_13 PD-(D/E)XK nuclease superfamily - - - 0.00000000000000000000002394 105.0
YYD3_k127_1688950_14 - - - - 0.000000000000000000000104 107.0
YYD3_k127_1688950_16 - - - - 0.0001273 45.0
YYD3_k127_1688950_2 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 336.0
YYD3_k127_1688950_3 Branched-chain amino acid transport system / permease component K01995,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 320.0
YYD3_k127_1688950_4 ABC transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 310.0
YYD3_k127_1688950_5 ABC-type branched-chain amino acid transport systems ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003537 294.0
YYD3_k127_1688950_6 response to copper ion K01187,K16915 - 3.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000001578 265.0
YYD3_k127_1688950_7 protein conserved in bacteria K09974 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005679 245.0
YYD3_k127_1688950_8 MASE1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000875 245.0
YYD3_k127_1688950_9 - - - - 0.000000000000000000000000000000000000000000000000000000000001784 215.0
YYD3_k127_1699326_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004871 561.0
YYD3_k127_1699326_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008075 381.0
YYD3_k127_1699326_2 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000003259 208.0
YYD3_k127_1699326_3 regulation of translation K03530 - - 0.0000000000000000000000008436 106.0
YYD3_k127_1700416_0 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 5e-324 1009.0
YYD3_k127_1700416_1 multicopper - - - 3.463e-259 811.0
YYD3_k127_1700416_2 Copper resistance K07233 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 307.0
YYD3_k127_1700416_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000002446 199.0
YYD3_k127_1700416_4 - - - - 0.00000001602 67.0
YYD3_k127_1700416_5 - - - - 0.000002251 55.0
YYD3_k127_175225_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 481.0
YYD3_k127_175225_1 PFAM von Willebrand factor type A K07114,K12511 - - 0.00000000000000000000000000000000000000000000000000000000000000000001611 248.0
YYD3_k127_175225_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000002963 222.0
YYD3_k127_175225_3 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000007738 203.0
YYD3_k127_175225_4 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0016032,GO:0016465,GO:0019058,GO:0019068,GO:0032991,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051704,GO:0061077,GO:0101031,GO:1990220 - 0.000000000000000000000000000000000008333 139.0
YYD3_k127_175225_5 Sortase family K07284 - 3.4.22.70 0.00000000000000000000000000000000001466 144.0
YYD3_k127_175225_6 SnoaL-like polyketide cyclase - - - 0.000000000000007923 86.0
YYD3_k127_175225_7 - - - - 0.00000003183 56.0
YYD3_k127_17567_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000855 361.0
YYD3_k127_17567_1 Beta-Casp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 344.0
YYD3_k127_17567_2 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006624 294.0
YYD3_k127_17567_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000968 284.0
YYD3_k127_17567_4 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001037 274.0
YYD3_k127_1796882_0 PFAM Glucose Sorbosone dehydrogenase K00117,K21430 GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016901,GO:0019842,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046872,GO:0048037,GO:0048038,GO:0055114,GO:0070968,GO:0097159,GO:1901363 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 304.0
YYD3_k127_1796882_1 UDP-glucoronosyl and UDP-glucosyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005776 284.0
YYD3_k127_1796882_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006115 258.0
YYD3_k127_1796882_3 aminopeptidase activity - - - 0.0000000000000000000000000000000000000000000000004127 186.0
YYD3_k127_1796882_4 Nucleotidyltransferase domain - - - 0.0000000000000000000000000000002255 126.0
YYD3_k127_1796882_5 Ankyrin repeats (many copies) - - - 0.00000000000000000000000005582 119.0
YYD3_k127_180264_0 Belongs to the ClpA ClpB family K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 6.959e-194 619.0
YYD3_k127_180264_1 Surface antigen variable number K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 404.0
YYD3_k127_1831239_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003868 331.0
YYD3_k127_1831239_1 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000007159 233.0
YYD3_k127_1832335_0 Aldehyde dehydrogenase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 535.0
YYD3_k127_1832335_1 Dehydrogenase K00114,K17760,K22473 - 1.1.2.8,1.1.5.5,1.1.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004207 485.0
YYD3_k127_1832335_2 alginic acid biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004408 379.0
YYD3_k127_1832335_3 TIGRFAM PQQ-dependent dehydrogenase, methanol ethanol family K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003085 359.0
YYD3_k127_1832335_5 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000004605 198.0
YYD3_k127_1832335_6 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000001433 183.0
YYD3_k127_1832335_7 FtsX-like permease family - - - 0.0000000000000000000000000000000000001571 150.0
YYD3_k127_1832335_8 - - - - 0.00000004154 61.0
YYD3_k127_183990_0 DnaJ central domain K03686 - - 0.0000000000000000000000000000000000000000015 160.0
YYD3_k127_183990_1 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000008634 165.0
YYD3_k127_183990_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.00000000000000000000000000000003344 134.0
YYD3_k127_183990_3 - - - - 0.0000000000000000014 95.0
YYD3_k127_183990_4 Amidase - - - 0.000000000000001959 78.0
YYD3_k127_1869633_0 belongs to the thioredoxin family K05838 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006262 449.0
YYD3_k127_1869633_1 - - - - 0.00000000000000000001033 96.0
YYD3_k127_1869633_2 Tetratricopeptide repeat - - - 0.00000000007587 75.0
YYD3_k127_1869633_3 ASPIC and UnbV - - - 0.0000004169 63.0
YYD3_k127_1879356_0 elongation factor G K02355 - - 2.84e-239 758.0
YYD3_k127_1879356_1 - - - - 0.00000000000000000236 89.0
YYD3_k127_1885707_0 Protein of unknown function (DUF1800) - - - 2.578e-246 775.0
YYD3_k127_1885707_1 Tetratricopeptide repeats K12132 - 2.7.11.1 2.95e-199 647.0
YYD3_k127_1885707_2 Twin-arginine translocation pathway signal sequence - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004904 527.0
YYD3_k127_1885707_3 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 300.0
YYD3_k127_1885707_4 methyltransferase K00590,K07319 - 2.1.1.113,2.1.1.72 0.0000000000000000000000000000000164 130.0
YYD3_k127_1904562_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 571.0
YYD3_k127_1904562_1 amino acid K03294,K19540 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006040,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0022804,GO:0022857,GO:0030389,GO:0030392,GO:0030393,GO:0031224,GO:0031226,GO:0034220,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046348,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098656,GO:1901135,GO:1901136,GO:1901281,GO:1901564,GO:1901565,GO:1901575,GO:1902475,GO:1903825,GO:1905039 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003006 509.0
YYD3_k127_1904562_10 PFAM Histone deacetylase - - - 0.00000000000000000001111 97.0
YYD3_k127_1904562_11 Putative ABC exporter - - - 0.0000000000000006889 91.0
YYD3_k127_1904562_12 Uncharacterized protein family, UPF0114 - - - 0.00000000001109 71.0
YYD3_k127_1904562_2 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 422.0
YYD3_k127_1904562_3 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 314.0
YYD3_k127_1904562_4 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001278 267.0
YYD3_k127_1904562_5 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000002356 234.0
YYD3_k127_1904562_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000003268 237.0
YYD3_k127_1904562_7 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000001808 220.0
YYD3_k127_1904562_8 Glutathione peroxidase - - - 0.000000000000000000000000007069 117.0
YYD3_k127_1904562_9 Amidohydrolase family - - - 0.0000000000000000000000001395 119.0
YYD3_k127_1917522_0 Protein of unknown function (DUF1501) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 458.0
YYD3_k127_1917522_1 Protein of unknown function (DUF1800) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005207 447.0
YYD3_k127_1917522_2 PFAM glycoside hydrolase family 77 K00705 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003242 414.0
YYD3_k127_1917522_3 PhoQ Sensor - - - 0.0000000000000000000000000000000001913 137.0
YYD3_k127_1917522_4 Methyltransferase domain - - - 0.0000000000000000000000000000000004388 135.0
YYD3_k127_1917522_5 PFAM RNP-1 like RNA-binding protein - - - 0.00000000000000000001153 100.0
YYD3_k127_1922635_0 transcription factor binding K02584,K12146,K12266,K15836,K21009 GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - 1.372e-210 675.0
YYD3_k127_1922635_1 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 608.0
YYD3_k127_1922635_2 ATP:ADP antiporter activity K01932,K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000584 375.0
YYD3_k127_1922635_3 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000008519 213.0
YYD3_k127_1922635_4 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000001426 192.0
YYD3_k127_1922635_5 Metalloenzyme superfamily - - - 0.0000000000000000000000000000000000000000000000002063 189.0
YYD3_k127_1922635_6 Ferredoxin--NADP reductase K21567 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000002188 136.0
YYD3_k127_192309_0 Protein of unknown function, DUF255 K06888 - - 1.546e-226 719.0
YYD3_k127_192309_1 R3H domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 492.0
YYD3_k127_192309_2 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000008613 228.0
YYD3_k127_192309_3 general stress protein - - - 0.0000000000000000000005221 102.0
YYD3_k127_1923261_0 ATPases associated with a variety of cellular activities K10441 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000008997 262.0
YYD3_k127_1923261_1 Belongs to the binding-protein-dependent transport system permease family K10440 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008643,GO:0015144,GO:0015145,GO:0015749,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0034219,GO:0044425,GO:0044464,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000005237 259.0
YYD3_k127_1923261_2 FKBP-type peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.00000000000000000000000001325 115.0
YYD3_k127_1923261_3 Carboxypeptidase regulatory-like domain - - - 0.0000000000002262 76.0
YYD3_k127_192792_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01874 - 6.1.1.10 4.036e-301 934.0
YYD3_k127_192792_1 PQQ-like domain K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004075 548.0
YYD3_k127_192792_10 Belongs to the LOG family - - - 0.0006215 44.0
YYD3_k127_192792_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003259 488.0
YYD3_k127_192792_3 2-keto-3-deoxy-L-rhamnonate aldolase activity K02510 - 4.1.2.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005946 449.0
YYD3_k127_192792_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 291.0
YYD3_k127_192792_5 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000705 273.0
YYD3_k127_192792_6 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000001163 181.0
YYD3_k127_192792_7 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000000003799 144.0
YYD3_k127_192792_8 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000003329 138.0
YYD3_k127_192792_9 Cytochrome c - - - 0.0000000000000000000000000002202 126.0
YYD3_k127_1930674_1 Tricorn protease C1 domain K08676 - - 0.00000000000005306 83.0
YYD3_k127_1938393_0 Ring hydroxylating alpha subunit (catalytic domain) K00479 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006579 396.0
YYD3_k127_1938393_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007591 261.0
YYD3_k127_1938393_2 - - - - 0.000000000000000000000000000000000000000000006082 178.0
YYD3_k127_1938393_3 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000004727 167.0
YYD3_k127_1938393_4 - - - - 0.0000000000000000000000000000000003299 136.0
YYD3_k127_1938393_5 NHL repeat - - - 0.000000000000000000000000000000003018 136.0
YYD3_k127_1938393_6 - - - - 0.000000000000000000000000000004513 126.0
YYD3_k127_1938393_8 MacB-like periplasmic core domain - - - 0.00000000000001563 83.0
YYD3_k127_1942152_0 Ser Thr phosphatase family protein K03547 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001339 278.0
YYD3_k127_1942152_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000001235 235.0
YYD3_k127_1943936_0 SMART Elongator protein 3 MiaB NifB - - - 1.993e-213 677.0
YYD3_k127_1943936_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003773 314.0
YYD3_k127_1943936_2 This stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000002725 215.0
YYD3_k127_1943936_3 divalent heavy-metal cations transporter K07238 - - 0.000000000000000000000000000000000000000007833 164.0
YYD3_k127_1943936_4 This stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form K07305 - 1.8.4.12 0.00000000002754 63.0
YYD3_k127_1943936_5 Belongs to the 'phage' integrase family - - - 0.0000000103 60.0
YYD3_k127_1955502_0 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 508.0
YYD3_k127_1955502_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 416.0
YYD3_k127_1955502_2 Peptidase dimerisation domain K13049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007143 409.0
YYD3_k127_1955502_3 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 308.0
YYD3_k127_1955502_4 Penicillin-binding Protein dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000002516 229.0
YYD3_k127_1955502_5 Multicopper oxidase - - - 0.000000000000000000001521 97.0
YYD3_k127_1955502_6 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 0.000000006388 61.0
YYD3_k127_1955502_7 P-type ATPase' K17686 - 3.6.3.54 0.0000001407 60.0
YYD3_k127_1957429_0 ABC transporter, transmembrane K11085 - - 5.243e-226 717.0
YYD3_k127_1957429_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 304.0
YYD3_k127_1957429_2 PFAM peptidase K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000302 270.0
YYD3_k127_1957429_3 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000003644 215.0
YYD3_k127_1957429_4 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000001094 110.0
YYD3_k127_1957429_5 Frataxin-like domain K06202 - - 0.00000000000000006565 94.0
YYD3_k127_1957429_6 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000002051 87.0
YYD3_k127_1957429_7 SMART PDZ DHR GLGF domain protein - - - 0.0000000000001338 74.0
YYD3_k127_1957429_8 Protein of unknown function (DUF3347) - - - 0.000002845 57.0
YYD3_k127_1988943_0 domain protein K14194 - - 0.0000000000000000000000000000000000000001334 170.0
YYD3_k127_1988943_1 Protein of unknown function (DUF3297) - - - 0.00000000000000000000000000000002856 127.0
YYD3_k127_1988943_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07667 - - 0.00000000000000000000000000000003097 130.0
YYD3_k127_1994380_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007154 609.0
YYD3_k127_1994380_1 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002971 451.0
YYD3_k127_1994380_10 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00004337 46.0
YYD3_k127_1994380_2 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 370.0
YYD3_k127_1994380_3 Catalyzes the conversion of dihydroorotate to orotate K17828 - 1.3.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 341.0
YYD3_k127_1994380_4 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003684 282.0
YYD3_k127_1994380_5 Orotidine 5'-phosphate decarboxylase / HUMPS family K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000146 215.0
YYD3_k127_1994380_6 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000005293 186.0
YYD3_k127_1994380_7 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000001007 156.0
YYD3_k127_1994380_8 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.00000000000000000000000000000000002077 142.0
YYD3_k127_1994380_9 - - - - 0.000000002665 61.0
YYD3_k127_2001766_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 340.0
YYD3_k127_2001766_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 334.0
YYD3_k127_2001766_2 PFAM TPR repeat-containing protein - - - 0.00000000000000003102 95.0
YYD3_k127_2001766_3 - - - - 0.000000000000001018 87.0
YYD3_k127_2003432_0 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 372.0
YYD3_k127_2003432_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 338.0
YYD3_k127_2003432_2 Domain of unknown function (DUF4166) - - - 0.0000000000000000000000000003547 120.0
YYD3_k127_2012445_0 Aldo Keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006495 365.0
YYD3_k127_2012445_1 Phospholipase/Carboxylesterase - - - 0.000000000000000000000000000000000000000000000000000000002137 206.0
YYD3_k127_2012445_2 SnoaL-like domain - - - 0.00000000000000000000000000000000000000003528 163.0
YYD3_k127_2012445_3 DsbA oxidoreductase - - - 0.000000000000000000000000000000000001535 146.0
YYD3_k127_2012445_4 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000002162 126.0
YYD3_k127_2012445_5 DNA topological change - - - 0.00000000006828 67.0
YYD3_k127_2012445_6 signal transduction protein with a C-terminal ATPase domain - - - 0.000122 50.0
YYD3_k127_2019032_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 595.0
YYD3_k127_2019032_1 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 422.0
YYD3_k127_2019032_2 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 318.0
YYD3_k127_2019032_3 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000004149 251.0
YYD3_k127_2019032_4 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000001443 230.0
YYD3_k127_2019032_5 energy transducer activity K03832 - - 0.000000000000000000000000000000000000000000001748 180.0
YYD3_k127_2019032_6 Penicillinase repressor - - - 0.00000000000000000000000000000000000000006137 154.0
YYD3_k127_2019412_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000005122 241.0
YYD3_k127_2019412_1 TonB-dependent Receptor Plug Domain - - - 0.00000000000000000000000000000000000000000000000000000000001993 214.0
YYD3_k127_2019412_2 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000183 159.0
YYD3_k127_2019412_3 SMART Tetratricopeptide domain protein - - - 0.00000000000000000000000002178 125.0
YYD3_k127_2019412_5 helix_turn_helix, Lux Regulon - - - 0.000000001468 69.0
YYD3_k127_2019412_6 Beta-lactamase - - - 0.00000002141 57.0
YYD3_k127_2019412_7 - - - - 0.00000005622 55.0
YYD3_k127_2019412_8 Carboxypeptidase regulatory-like domain - - - 0.0006157 48.0
YYD3_k127_2019565_0 DNA photolyase K01669 - 4.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005906 456.0
YYD3_k127_2021354_0 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 477.0
YYD3_k127_2021354_1 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006456 411.0
YYD3_k127_2021354_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0052855,GO:0052856,GO:0052857 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 413.0
YYD3_k127_2021354_3 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15061,K15065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 374.0
YYD3_k127_2021354_4 MFS_1 like family K08161 - - 0.00000000000000000000000000000000000000000000000001342 195.0
YYD3_k127_2021354_5 Hydrolase, NUDIX family K01515 - 3.6.1.13 0.00000000000000000000000000000000000009346 151.0
YYD3_k127_2021354_6 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000002958 119.0
YYD3_k127_2021354_7 - - - - 0.000000001271 66.0
YYD3_k127_2021354_8 ABC-type nitrate sulfonate bicarbonate transport K02051 - - 0.000002383 59.0
YYD3_k127_2026226_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 445.0
YYD3_k127_2026226_1 Associated with various cellular activities K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009879 396.0
YYD3_k127_2026226_10 Penicillinase repressor - - - 0.0000000000000000000000000000000000000000000000002757 178.0
YYD3_k127_2026226_11 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000941 136.0
YYD3_k127_2026226_12 Von Willebrand factor type A - - - 0.000000000000000000000000000000496 131.0
YYD3_k127_2026226_13 PFAM phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.000000000000000000000000000004183 126.0
YYD3_k127_2026226_14 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 GO:0003674,GO:0004857,GO:0005488,GO:0008150,GO:0008270,GO:0008657,GO:0010911,GO:0030234,GO:0032780,GO:0042030,GO:0043086,GO:0043167,GO:0043169,GO:0043462,GO:0044092,GO:0046872,GO:0046914,GO:0050790,GO:0051336,GO:0051346,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0072586,GO:0098772,GO:2000371,GO:2000372 - 0.00000000000007684 73.0
YYD3_k127_2026226_15 DNA recombination K03631,K13582 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0030312,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 - 0.0002108 54.0
YYD3_k127_2026226_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 383.0
YYD3_k127_2026226_3 Belongs to the CinA family K03742,K03743 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005698 349.0
YYD3_k127_2026226_4 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000611 342.0
YYD3_k127_2026226_5 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 319.0
YYD3_k127_2026226_6 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000005866 265.0
YYD3_k127_2026226_7 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.00000000000000000000000000000000000000000000000000000000004207 214.0
YYD3_k127_2026226_8 - K01286 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000002649 214.0
YYD3_k127_2026226_9 riboflavin synthase, alpha subunit K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000024 185.0
YYD3_k127_2036013_0 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005717 349.0
YYD3_k127_2036013_1 permease protein PstA K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 334.0
YYD3_k127_2036013_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 321.0
YYD3_k127_2036013_3 Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008979 302.0
YYD3_k127_2036013_4 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009604 274.0
YYD3_k127_2036013_5 histidine kinase HAMP region domain protein K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000002293 273.0
YYD3_k127_2036013_6 PFAM response regulator receiver K02483,K07658,K07668 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009512 249.0
YYD3_k127_2036013_7 PFAM response regulator receiver K07657,K07664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007247 247.0
YYD3_k127_2036013_8 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000000000000004898 241.0
YYD3_k127_2036013_9 - - - - 0.0003379 51.0
YYD3_k127_204494_0 FtsX-like permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002254 599.0
YYD3_k127_204494_1 beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006622 441.0
YYD3_k127_204494_2 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 364.0
YYD3_k127_204494_3 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003938 336.0
YYD3_k127_204494_4 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009067 246.0
YYD3_k127_204494_5 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001865 244.0
YYD3_k127_204494_6 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000000000002689 151.0
YYD3_k127_204494_7 - - - - 0.000000000000000000000002274 107.0
YYD3_k127_204494_8 Protein of unknown function (DUF421) - - - 0.00000000000000000005793 91.0
YYD3_k127_2056118_0 Pup-ligase protein K20814 - 3.5.1.119 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 494.0
YYD3_k127_2056118_1 Proteasomal ATPase OB/ID domain K13527 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 360.0
YYD3_k127_20747_0 DNA topological change K03168 - 5.99.1.2 2.279e-241 769.0
YYD3_k127_20747_1 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 428.0
YYD3_k127_20747_2 Domain of unknown function (DUF4166) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003073 272.0
YYD3_k127_20747_3 Ankyrin repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000619 284.0
YYD3_k127_20747_4 response to heat K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000003812 232.0
YYD3_k127_20747_5 decarboxylase K01607 - 4.1.1.44 0.000000000000003802 76.0
YYD3_k127_2101116_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 3.781e-204 656.0
YYD3_k127_2101116_1 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 324.0
YYD3_k127_2101116_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000003736 126.0
YYD3_k127_2102293_0 Belongs to the ABC transporter superfamily K02031,K02032 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 4.5e-321 996.0
YYD3_k127_2102293_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0022857,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0033036,GO:0033218,GO:0042277,GO:0042597,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043295,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0048037,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072341,GO:1900750,GO:1901681,GO:1904680 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 604.0
YYD3_k127_2102293_2 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004905 425.0
YYD3_k127_2102293_3 N-terminal TM domain of oligopeptide transport permease C K02034 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005586 368.0
YYD3_k127_2103171_0 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005729 524.0
YYD3_k127_2103171_1 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000000000000001337 163.0
YYD3_k127_2103171_2 homoserine kinase activity - - - 0.0000000000000000000008003 100.0
YYD3_k127_2107284_0 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 460.0
YYD3_k127_2107284_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007763 352.0
YYD3_k127_2107284_2 DNA alkylation repair enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007722 246.0
YYD3_k127_2107284_3 PQQ-like domain K17760 - 1.1.9.1 0.00000000000000000000000003453 114.0
YYD3_k127_2107284_4 SnoaL-like domain - - - 0.00000002863 58.0
YYD3_k127_2124201_0 Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) K17763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007682 259.0
YYD3_k127_2124201_1 Histidine kinase-like ATPases K17752 - 2.7.11.1 0.00000000000000000000000000000002728 130.0
YYD3_k127_2124201_2 Sigma factor PP2C-like phosphatases - - - 0.0000000000000000000000000000001123 138.0
YYD3_k127_2124201_3 Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) K17762 - - 0.000000000000000000000000000001491 124.0
YYD3_k127_2128723_0 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 623.0
YYD3_k127_2128723_1 alginic acid biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 581.0
YYD3_k127_2128723_2 transposase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006337 499.0
YYD3_k127_2128723_3 PFAM NHL repeat containing protein - - - 0.0000000000000008657 86.0
YYD3_k127_2128723_4 WD-40 repeat - - - 0.000001032 53.0
YYD3_k127_2128723_5 - - - - 0.00000536 54.0
YYD3_k127_2131218_0 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 425.0
YYD3_k127_2131218_1 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000002722 219.0
YYD3_k127_2131218_2 - - - - 0.00000000000000000004804 98.0
YYD3_k127_2177953_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 8.61e-225 700.0
YYD3_k127_2177953_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 409.0
YYD3_k127_2177953_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 356.0
YYD3_k127_2177953_3 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004542 269.0
YYD3_k127_2177953_4 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000000005128 234.0
YYD3_k127_2177953_5 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.0000000000000000000000000000000000000000000000000000000000000005906 226.0
YYD3_k127_2177953_6 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000000000003028 183.0
YYD3_k127_2177953_7 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000001638 146.0
YYD3_k127_2177953_8 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000000000000003731 145.0
YYD3_k127_2177953_9 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000000000000001264 114.0
YYD3_k127_218494_0 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 302.0
YYD3_k127_218494_1 29 kDa ribonucleoprotein K11294 GO:0001101,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008187,GO:0008266,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009894,GO:0009895,GO:0009941,GO:0010033,GO:0010319,GO:0010468,GO:0010605,GO:0010608,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033993,GO:0034357,GO:0042221,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043489,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055035,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:0097305,GO:1901363,GO:1901700,GO:1902369 - 0.00000006016 57.0
YYD3_k127_2190344_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 586.0
YYD3_k127_2190344_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004552 582.0
YYD3_k127_2190344_10 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000522 61.0
YYD3_k127_2190344_11 Outer membrane protein (OmpH-like) K06142 - - 0.000000005568 66.0
YYD3_k127_2190344_12 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00005936 47.0
YYD3_k127_2190344_13 Protein of unknown function (DUF721) - - - 0.0003691 48.0
YYD3_k127_2190344_2 Domain of unknown function (DUF3943) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000698 479.0
YYD3_k127_2190344_3 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004828 409.0
YYD3_k127_2190344_4 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006856 344.0
YYD3_k127_2190344_5 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000001225 193.0
YYD3_k127_2190344_6 ATPase activity K01990 - - 0.00000000000000000000000000000000000000000008231 166.0
YYD3_k127_2190344_7 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.000000000000000000000000000000000007249 140.0
YYD3_k127_2190344_8 Sh3 type 3 domain protein - - - 0.000000000000003683 88.0
YYD3_k127_2191186_0 PFAM Magnesium chelatase, ChlI subunit K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002744 455.0
YYD3_k127_2191186_1 TIGRFAM clan AA aspartic protease, AF_0612 family - - - 0.00000000000000000000000000000000000000000007671 162.0
YYD3_k127_2193524_0 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 337.0
YYD3_k127_2193524_1 metallopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001082 246.0
YYD3_k127_2193524_2 Bacterial-like globin K06886 - - 0.00000000000000000000000000000000000000000000000000046 187.0
YYD3_k127_2193524_3 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - 0.0000000000000000000000000004871 116.0
YYD3_k127_2227484_0 cytochrome p450 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006084 495.0
YYD3_k127_2227484_2 PFAM Exonuclease, RNase T and DNA polymerase III K02342 - 2.7.7.7 0.000000000000000000000000000000000000000003702 162.0
YYD3_k127_2238179_0 aminopeptidase activity K05994 - 3.4.11.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004214 537.0
YYD3_k127_2238179_1 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001966 273.0
YYD3_k127_2238179_2 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000531 199.0
YYD3_k127_2238179_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000005179 177.0
YYD3_k127_2238179_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000002304 141.0
YYD3_k127_2238179_5 COG2217 Cation transport ATPase K17686 - 3.6.3.54 0.000000000006383 68.0
YYD3_k127_2238179_6 dehydrogenase e1 component K00164 - 1.2.4.2 0.0000000000113 68.0
YYD3_k127_2241211_0 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 540.0
YYD3_k127_2241211_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003173 516.0
YYD3_k127_2241211_2 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 400.0
YYD3_k127_2241211_3 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005854 371.0
YYD3_k127_2263857_0 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 370.0
YYD3_k127_2263857_1 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003701 292.0
YYD3_k127_2263857_2 Glycoprotease family K01409,K14742 GO:0002949,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.0000000000000000000000000008373 121.0
YYD3_k127_2263857_3 Acetyltransferase (GNAT) domain K03789 - 2.3.1.128 0.000000000000000000000001217 109.0
YYD3_k127_2263857_4 Biotin-lipoyl like K02005 - - 0.000002042 53.0
YYD3_k127_2268546_0 Acts as a magnesium transporter K06213 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 553.0
YYD3_k127_2268546_1 PAP2 superfamily - - - 0.00000000000000005506 85.0
YYD3_k127_2268546_3 Surface antigen - - - 0.0000258 55.0
YYD3_k127_2296932_0 Insulinase (Peptidase family M16) K07263 - - 6.116e-266 849.0
YYD3_k127_2296932_1 Spermine/spermidine synthase domain - - - 4.433e-245 779.0
YYD3_k127_2296932_2 Dienelactone hydrolase family - - - 1.483e-195 627.0
YYD3_k127_2296932_3 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 375.0
YYD3_k127_2296932_4 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000599 362.0
YYD3_k127_2296932_5 aminopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 359.0
YYD3_k127_2296932_6 beta-lactamase activity K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 357.0
YYD3_k127_2296932_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004925 277.0
YYD3_k127_2296932_8 - - - - 0.00000000000000000000000000000000000001764 150.0
YYD3_k127_2296932_9 - - - - 0.000000000000000000000000004708 124.0
YYD3_k127_2306305_0 phenylalanyl-tRNA synthetase beta subunit K01890 - 6.1.1.20 0.000000000000000000000000000000000000000001224 165.0
YYD3_k127_2306305_1 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000007741 57.0
YYD3_k127_2306305_2 - - - - 0.000007835 51.0
YYD3_k127_2327286_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.715e-269 843.0
YYD3_k127_2327286_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007858 367.0
YYD3_k127_2327286_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.0000000000000000000000000000000000000000000000000000000000000000000000006061 255.0
YYD3_k127_2327286_3 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001594 250.0
YYD3_k127_2327286_4 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000000000000000000000000000000000000000000000000000000000007382 227.0
YYD3_k127_2327286_5 - - - - 0.000000000000000000000000000002963 123.0
YYD3_k127_2327286_6 - - - - 0.0000000000000000000000004184 106.0
YYD3_k127_2327286_7 YbbR-like protein - - - 0.00000000000000000000002326 108.0
YYD3_k127_2327286_8 - - - - 0.00000000000005925 72.0
YYD3_k127_2331715_0 Porphyromonas-type peptidyl-arginine deiminase K10536 - 3.5.3.12 8.997e-233 738.0
YYD3_k127_2331715_1 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008138 337.0
YYD3_k127_2331715_2 involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007558 336.0
YYD3_k127_2331715_3 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000000001972 191.0
YYD3_k127_2331715_4 FIC domain containing - GO:0000166,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006836,GO:0006950,GO:0006952,GO:0007600,GO:0007601,GO:0007610,GO:0007632,GO:0008081,GO:0008144,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0015696,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0017076,GO:0018117,GO:0018175,GO:0019538,GO:0023051,GO:0030176,GO:0030544,GO:0030554,GO:0031072,GO:0031224,GO:0031227,GO:0031967,GO:0031975,GO:0031984,GO:0032501,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034260,GO:0034976,GO:0035639,GO:0036094,GO:0036211,GO:0042175,GO:0042578,GO:0042742,GO:0042802,GO:0042803,GO:0043086,GO:0043087,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044601,GO:0044602,GO:0044603,GO:0045117,GO:0046983,GO:0048519,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050829,GO:0050877,GO:0050896,GO:0050906,GO:0050908,GO:0050953,GO:0050962,GO:0051087,GO:0051179,GO:0051234,GO:0051336,GO:0051346,GO:0051606,GO:0051608,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0065009,GO:0070566,GO:0070733,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0080134,GO:0080135,GO:0097159,GO:0097367,GO:0098542,GO:0098827,GO:0140096,GO:1900101,GO:1901265,GO:1901363,GO:1901564,GO:1903894,GO:1905897 - 0.000000001473 67.0
YYD3_k127_2333483_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000002212 213.0
YYD3_k127_2333483_2 von Willebrand factor, type A - - - 0.0000186 52.0
YYD3_k127_233781_0 SIS domain K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008218 286.0
YYD3_k127_233781_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000007168 244.0
YYD3_k127_233781_2 HAD-hyrolase-like K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000007513 204.0
YYD3_k127_233781_3 Nucleotidyl transferase - - - 0.0000000000000000000000000000000000000007011 151.0
YYD3_k127_2343789_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009198 417.0
YYD3_k127_2343789_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 320.0
YYD3_k127_2343789_2 Transposase IS200 like K07491 - - 0.000000000000000000000000000000000000000000000001388 185.0
YYD3_k127_2343789_3 Predicted membrane protein (DUF2339) - - - 0.00000000000000000000000000002423 125.0
YYD3_k127_2343789_4 COG1228 Imidazolonepropionase and related - - - 0.0000217 57.0
YYD3_k127_2369219_0 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 GO:0000049,GO:0002937,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0017144,GO:0018130,GO:0019438,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0042364,GO:0042723,GO:0042724,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 361.0
YYD3_k127_2369219_1 Peptidase family M50 K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002763 284.0
YYD3_k127_2369219_2 Belongs to the PdxA family K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.000000000000000000000000000000000000000000000000000000000000000000002329 246.0
YYD3_k127_2369219_3 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0000000000000000000000000000000000000000000000000001611 192.0
YYD3_k127_2369219_4 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000000000002162 161.0
YYD3_k127_2369219_5 DNA polymerase III K02341 - 2.7.7.7 0.0000000000000000000000000000000000000001631 163.0
YYD3_k127_2369219_6 Hfq protein - - - 0.00000000000000000000000004252 111.0
YYD3_k127_2379709_0 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005819 453.0
YYD3_k127_2379709_1 Cytochrome c554 and c-prime K03620 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 392.0
YYD3_k127_2379709_2 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.00000000000002372 74.0
YYD3_k127_2388647_0 Alpha mannosidase, middle domain K01191 - 3.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000185 256.0
YYD3_k127_2388678_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006695 378.0
YYD3_k127_2388678_1 pfam abc K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000239 257.0
YYD3_k127_2388678_2 PFAM Haloacid dehalogenase domain protein hydrolase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000007184 207.0
YYD3_k127_2411060_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001869 260.0
YYD3_k127_2411060_1 WD40-like Beta Propeller Repeat K03641 - - 0.0000000000000000000000000000000000000000000001349 186.0
YYD3_k127_2411060_2 methylamine metabolic process K15977 - - 0.0000000000000000000000000000000000000000005058 162.0
YYD3_k127_2411060_3 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000005034 140.0
YYD3_k127_2411060_4 DoxX-like family - - - 0.000000000000000000000000000000002053 132.0
YYD3_k127_2411060_5 cAMP biosynthetic process - - - 0.000000000000000000001352 109.0
YYD3_k127_2411060_6 oxidoreductase activity K00337,K03333,K04771,K07114 - 1.1.3.6,1.6.5.3,3.4.21.107 0.0000000006208 71.0
YYD3_k127_2411060_7 Domain of unknown function (DUF4440) - - - 0.00004279 51.0
YYD3_k127_2417154_0 Spermine/spermidine synthase domain - - - 3.712e-214 684.0
YYD3_k127_2417154_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000006683 127.0
YYD3_k127_2417154_2 oxidoreductase activity K12511 - - 0.00000000000000000006512 102.0
YYD3_k127_2422475_0 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000000000000000000000000000000000004392 223.0
YYD3_k127_2422475_1 - - - - 0.0000000000000000000000000000000006155 143.0
YYD3_k127_2422475_2 - - - - 0.000000000692 67.0
YYD3_k127_2422475_3 long-chain fatty acid transport protein - - - 0.000008979 58.0
YYD3_k127_242708_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1167.0
YYD3_k127_242708_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1094.0
YYD3_k127_242708_2 Oxidoreductase molybdopterin binding domain K07147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 371.0
YYD3_k127_242708_3 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000005607 228.0
YYD3_k127_242708_4 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000000000000000000000000000000000000000000000000000000000000000158 228.0
YYD3_k127_242708_5 Disulphide isomerase - - - 0.0000000000000000000000000000000000000000000000000003362 188.0
YYD3_k127_2433911_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 1.034e-234 741.0
YYD3_k127_2433911_1 Cobalamin B12-binding K01849 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000003418 196.0
YYD3_k127_2433911_2 carboxylase K01969 - 6.4.1.4 0.000000000000000000000000000000000000004873 149.0
YYD3_k127_2433911_3 - - - - 0.00000000000000000000219 98.0
YYD3_k127_2437892_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006044 511.0
YYD3_k127_2437892_1 GDP-mannose 4,6 dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008336 424.0
YYD3_k127_2437892_2 methyltransferase activity - - - 0.0000000000000000000008259 100.0
YYD3_k127_2437892_3 Methionine biosynthesis protein MetW - - - 0.00000000000000004502 87.0
YYD3_k127_2437892_4 Transaldolase K00616 - 2.2.1.2 0.00000000000002684 73.0
YYD3_k127_2453715_0 ATP-dependent DNA helicase RecG K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 501.0
YYD3_k127_2453715_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 469.0
YYD3_k127_2453715_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004259 362.0
YYD3_k127_2453715_3 domain protein K14194 - - 0.000000000000000000000000000000000000001363 162.0
YYD3_k127_2453715_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000002119 132.0
YYD3_k127_2454122_0 alcohol dehydrogenase K13979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006849 464.0
YYD3_k127_2454122_1 translation initiation factor activity K06996 - - 0.0000000000000002497 79.0
YYD3_k127_2454122_2 Uncharacterized protein conserved in bacteria (DUF2236) - - - 0.0000000000000004177 84.0
YYD3_k127_2462869_0 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 621.0
YYD3_k127_2462869_1 PFAM major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006732 402.0
YYD3_k127_2462869_2 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 370.0
YYD3_k127_2462869_3 ankyrin repeat K15503 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006549 298.0
YYD3_k127_2462869_4 PFAM Xylose isomerase domain protein TIM barrel - - - 0.00005047 47.0
YYD3_k127_2463719_0 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005506 591.0
YYD3_k127_2463719_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 461.0
YYD3_k127_2463719_2 Type IV pilus assembly protein PilM; K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 338.0
YYD3_k127_2463719_3 Secretin and TonB N terminus short domain K02666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006071 290.0
YYD3_k127_2463719_4 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000000000003562 162.0
YYD3_k127_2463719_5 Acetyl-CoA carboxylase, biotin carboxyl carrier protein K01571,K01960 - 4.1.1.3,6.4.1.1 0.0000000000000000000000000000000002019 138.0
YYD3_k127_2463719_6 Helix-turn-helix domain - - - 0.000000000000000001599 87.0
YYD3_k127_2463719_7 domain protein - - - 0.0000000000000002375 92.0
YYD3_k127_2463719_8 PFAM Fimbrial assembly family protein K02663 - - 0.00000000000007289 79.0
YYD3_k127_2463719_9 Pilus assembly protein PilO K02664 - - 0.0000000000002362 78.0
YYD3_k127_2486509_0 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000000000000000000002641 198.0
YYD3_k127_2486509_1 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000000000000000000001046 139.0
YYD3_k127_2486509_2 Glutathione peroxidase - - - 0.0000000000000001162 90.0
YYD3_k127_2486509_3 Major Facilitator Superfamily - - - 0.0000000000000009872 80.0
YYD3_k127_24958_0 MviN-like protein K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 566.0
YYD3_k127_24958_1 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000933 363.0
YYD3_k127_24958_2 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 339.0
YYD3_k127_24958_3 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K13832 - 1.1.1.25,4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001324 286.0
YYD3_k127_24958_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006723 269.0
YYD3_k127_24958_5 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000003836 248.0
YYD3_k127_24958_6 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.0000000000000000000000000000000000000000000000000000000000000000001241 242.0
YYD3_k127_24958_7 - - - - 0.0000000000000000000000000000000000000000001982 178.0
YYD3_k127_24958_8 Penicillinase repressor - - - 0.000000000000000000000000000000004189 134.0
YYD3_k127_24958_9 Peptidase family M48 - - - 0.00000000000000000000000000000002811 134.0
YYD3_k127_2527180_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005558 345.0
YYD3_k127_2527180_1 protein kinase activity - - - 0.000000000000000000000000002056 122.0
YYD3_k127_2527180_2 Surface antigen - - - 0.00000000006444 65.0
YYD3_k127_2535415_0 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 377.0
YYD3_k127_2535415_1 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008301 377.0
YYD3_k127_2535415_10 regulatory protein, FmdB family - - - 0.00000000001551 68.0
YYD3_k127_2535415_11 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0000002377 54.0
YYD3_k127_2535415_2 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 323.0
YYD3_k127_2535415_3 PFAM NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002118 308.0
YYD3_k127_2535415_4 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003779 293.0
YYD3_k127_2535415_5 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001216 299.0
YYD3_k127_2535415_6 PFAM glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001796 260.0
YYD3_k127_2535415_7 - - - - 0.0000000000000000000000000000000000000000001437 176.0
YYD3_k127_2535415_8 response regulator K07685 - - 0.000000000000000000000000000000000000003248 156.0
YYD3_k127_2535415_9 - - - - 0.00000000000000000000000003776 119.0
YYD3_k127_2539769_0 MMPL family K03296 - - 0.0 1072.0
YYD3_k127_2539769_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799,K21135 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 344.0
YYD3_k127_2542024_0 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0 1405.0
YYD3_k127_2542024_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168,K07479 GO:0003674,GO:0003824,GO:0003916,GO:0003917,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016853,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.2 1.978e-290 912.0
YYD3_k127_2542024_2 DNA recombination-mediator protein A K03168,K04096 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001497 282.0
YYD3_k127_2542024_3 PFAM Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000009633 250.0
YYD3_k127_2542024_4 PFAM Peptidase C26 K07010 - - 0.000000000000000000000000000000000000000000000000008684 190.0
YYD3_k127_2542024_5 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000004947 187.0
YYD3_k127_2542024_6 Redoxin domain protein - - - 0.00000000000000000000000000000000000000000156 161.0
YYD3_k127_2542024_7 COG4771 Outer membrane receptor for ferrienterochelin and colicins - - - 0.0000271 53.0
YYD3_k127_2553001_0 PFAM peptidase U32 K08303 - - 0.0 1068.0
YYD3_k127_2553001_1 Las17-binding protein actin regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007392 251.0
YYD3_k127_2553001_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000001278 147.0
YYD3_k127_2553001_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000001408 110.0
YYD3_k127_2555474_0 Monomeric isocitrate dehydrogenase K00031 - 1.1.1.42 0.0 1063.0
YYD3_k127_2555474_1 Belongs to the IlvD Edd family - - - 3.36e-291 904.0
YYD3_k127_2555474_2 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006174 512.0
YYD3_k127_2555474_3 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 296.0
YYD3_k127_2555474_4 PFAM Amidohydrolase 2 K10221 - 3.1.1.57 0.0000000000000000000000000000000000000000000000000000000000000005792 230.0
YYD3_k127_2564122_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 582.0
YYD3_k127_2564122_1 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000003135 247.0
YYD3_k127_2564122_2 Uncharacterized conserved protein (COG2071) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008963 246.0
YYD3_k127_2564122_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000004672 214.0
YYD3_k127_2618170_0 PFAM peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004036 293.0
YYD3_k127_2618170_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000004136 204.0
YYD3_k127_2618170_2 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.000000000001036 67.0
YYD3_k127_2618170_3 domain protein K14194 - - 0.0005916 52.0
YYD3_k127_262073_0 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000008474 140.0
YYD3_k127_262073_1 - - - - 0.0000000000000000000000002028 120.0
YYD3_k127_262073_2 Putative zinc-finger - - - 0.000000004261 65.0
YYD3_k127_2635324_0 Aminomethyltransferase folate-binding domain K15064 - - 2.466e-201 643.0
YYD3_k127_2635324_1 XdhC and CoxI family K07402 - - 0.00000000000000000000000000000000000000000000000000002104 193.0
YYD3_k127_2635324_2 CO dehydrogenase flavoprotein C-terminal domain K20445 - 1.17.1.5 0.0000000000004585 79.0
YYD3_k127_2635324_3 - - - - 0.00000000001561 64.0
YYD3_k127_2660513_0 Vitamin K epoxide reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000008245 235.0
YYD3_k127_2660513_1 May be involved in cell division - - - 0.0000000000000000000000000000000000000000000001553 175.0
YYD3_k127_2660513_2 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000003702 162.0
YYD3_k127_2668507_0 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 358.0
YYD3_k127_2668507_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002853 276.0
YYD3_k127_2668507_10 - - - - 0.00000008868 62.0
YYD3_k127_2668507_2 Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000002295 249.0
YYD3_k127_2668507_3 Haem-degrading - - - 0.000000000000000000000000000000000000000311 155.0
YYD3_k127_2668507_4 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000000000000000002257 123.0
YYD3_k127_2668507_5 - - - - 0.00000000000000003216 93.0
YYD3_k127_2668507_7 - - - - 0.00000000000001214 85.0
YYD3_k127_2668507_8 Peptidase M16C associated K06972 - - 0.00000000002853 66.0
YYD3_k127_2668507_9 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000024 69.0
YYD3_k127_2678351_0 Protein kinase domain K12132 - 2.7.11.1 1.994e-244 786.0
YYD3_k127_2678351_1 cytochrome K17230 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003705 398.0
YYD3_k127_2678351_2 UDP-4-amino-4-deoxy-L-arabinose aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002233 252.0
YYD3_k127_2678351_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000001388 215.0
YYD3_k127_2678351_4 COG0515 Serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000004539 218.0
YYD3_k127_2678351_5 Sigma-70, region 4 K03088 - - 0.00000000000000002559 91.0
YYD3_k127_2678351_6 - - - - 0.0001137 51.0
YYD3_k127_269028_0 peptidylprolyl isomerase, FKBP-type K01802,K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000001223 234.0
YYD3_k127_269028_1 hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000000000799 163.0
YYD3_k127_269028_2 Protein of unknown function (DUF3467) - - - 0.0000000000000000000000000000611 119.0
YYD3_k127_269028_3 Carboxypeptidase regulatory-like domain - - - 0.0000004526 59.0
YYD3_k127_2712418_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000002769 167.0
YYD3_k127_2712418_1 pathogenesis - - - 0.000000000000000000000000002439 123.0
YYD3_k127_2712418_2 Sigma-70 region 2 K03088 - - 0.0000000000000000000000009832 110.0
YYD3_k127_2712418_3 serine-type D-Ala-D-Ala carboxypeptidase activity K07259 - 3.4.16.4 0.000000000000000000000003383 116.0
YYD3_k127_2714877_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 1.7e-209 664.0
YYD3_k127_2714877_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000006898 237.0
YYD3_k127_2714877_2 - - - - 0.0000000000000000000000000000000000000006592 153.0
YYD3_k127_2714877_3 PAP2 superfamily - - - 0.00000000000000000005456 101.0
YYD3_k127_2714877_4 Pfam Cation efflux - - - 0.000000000153 69.0
YYD3_k127_2763284_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006275 505.0
YYD3_k127_2763284_1 Cys/Met metabolism PLP-dependent enzyme K01758 - 4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005658 398.0
YYD3_k127_2763284_2 Threonine dehydratase K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005206 387.0
YYD3_k127_2763284_3 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000000000000005535 213.0
YYD3_k127_2763284_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000009372 143.0
YYD3_k127_2763284_6 MacB-like periplasmic core domain - - - 0.0000000000000008464 78.0
YYD3_k127_2763284_8 Carboxypeptidase regulatory-like domain - - - 0.00001254 55.0
YYD3_k127_2822553_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 1e-323 1020.0
YYD3_k127_2822553_1 CBS domain K03699 - - 0.00000000000000000000000000000000000000000000000000004447 193.0
YYD3_k127_2822553_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585,K07799,K18298,K18901,K19586,K19595 - - 0.000000000000000000000000000000000001285 145.0
YYD3_k127_2823982_0 PLD-like domain K06131 - - 1.067e-196 624.0
YYD3_k127_2823982_1 PFAM Glucose Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 509.0
YYD3_k127_2823982_2 PQQ-like domain K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000002395 225.0
YYD3_k127_2823982_3 - - - - 0.0000000000000000000000000000000000000000000000000000001984 200.0
YYD3_k127_2823982_4 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000004569 173.0
YYD3_k127_2823982_5 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000001616 134.0
YYD3_k127_2823982_6 - - - - 0.00000000000000000000000008366 111.0
YYD3_k127_2823982_7 regulatory protein LysR K07219 - - 0.0000000000000000004724 99.0
YYD3_k127_2823982_8 - - - - 0.00000000000000002039 87.0
YYD3_k127_2824268_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01531 - 3.6.3.2 9.892e-259 815.0
YYD3_k127_2831185_0 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005625 433.0
YYD3_k127_2831185_1 Sodium/calcium exchanger protein K07300 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 423.0
YYD3_k127_2831185_2 cellular response to DNA damage stimulus K07340 - - 0.00000000000000000000000000000000002329 142.0
YYD3_k127_2836004_0 DNA topoisomerase type I activity K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 391.0
YYD3_k127_2836004_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000001091 214.0
YYD3_k127_2836004_2 - - - - 0.0000000000000000000000000000000000000000001733 176.0
YYD3_k127_2836004_3 Heavy-metal resistance - - - 0.0000000000000000000000000000000008349 136.0
YYD3_k127_2856292_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 6.326e-309 956.0
YYD3_k127_2856292_1 amine dehydrogenase activity K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 491.0
YYD3_k127_2856292_2 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.000000000000000000000000009676 115.0
YYD3_k127_2857493_0 MacB-like periplasmic core domain - - - 1.255e-229 738.0
YYD3_k127_2857493_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 1.913e-207 674.0
YYD3_k127_2857493_2 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 427.0
YYD3_k127_2857493_3 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 350.0
YYD3_k127_2857493_4 retrograde transport, endosome to Golgi K07095 - - 0.0000000000000000000000000000000000000000000000000000000961 199.0
YYD3_k127_2857493_6 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000000000000000000004584 130.0
YYD3_k127_2857493_7 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000887 73.0
YYD3_k127_2857769_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 5.931e-219 693.0
YYD3_k127_2857769_1 ABC transporter C-terminal domain K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 426.0
YYD3_k127_2857769_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0001843 46.0
YYD3_k127_2870271_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 511.0
YYD3_k127_2870271_1 Male sterility protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004217 449.0
YYD3_k127_2870271_2 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001688 239.0
YYD3_k127_2870271_3 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000000000001777 163.0
YYD3_k127_289472_0 PhoPQ-activated pathogenicity-related protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000005157 235.0
YYD3_k127_289472_1 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 0.00000000000000000000000000000000000000000000001338 173.0
YYD3_k127_2901659_0 G8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 566.0
YYD3_k127_2901659_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 325.0
YYD3_k127_2901659_2 - - - - 0.00000000000002209 84.0
YYD3_k127_2901659_4 Phage integrase family - - - 0.000000004585 63.0
YYD3_k127_2901659_5 Protein of unknown function (DUF3489) - - - 0.000000005707 57.0
YYD3_k127_2901659_6 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000004286 59.0
YYD3_k127_2903007_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 3.596e-212 683.0
YYD3_k127_2903007_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901 562.0
YYD3_k127_2903007_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 539.0
YYD3_k127_2903007_3 PFAM 2Fe-2S -binding - - - 0.00000000000000000000000000000000000000000000000000000000000000006904 224.0
YYD3_k127_2903007_4 Ami_3 K01448 - 3.5.1.28 0.000000212 57.0
YYD3_k127_2903793_0 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004063 257.0
YYD3_k127_2903793_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000001826 135.0
YYD3_k127_2903793_2 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000001389 80.0
YYD3_k127_2903793_3 ECF sigma factor - - - 0.000000000000193 72.0
YYD3_k127_2903793_4 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000006437 54.0
YYD3_k127_2903793_5 glyoxalase - - - 0.0002677 46.0
YYD3_k127_2907555_0 GTP-binding protein TypA K06207 - - 2.496e-318 982.0
YYD3_k127_2907555_1 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 2.955e-196 626.0
YYD3_k127_2907555_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000000002796 206.0
YYD3_k127_2907555_3 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000005293 186.0
YYD3_k127_2918847_0 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006983 460.0
YYD3_k127_2918847_1 3-hydroxyacyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000001061 204.0
YYD3_k127_292456_0 aminoacyl-tRNA synthetase K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 450.0
YYD3_k127_292456_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 431.0
YYD3_k127_292456_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000002382 220.0
YYD3_k127_292456_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000000000000000000000003993 208.0
YYD3_k127_292456_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000002091 202.0
YYD3_k127_292456_5 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000005928 182.0
YYD3_k127_292456_6 PFAM Cytochrome c assembly protein - - - 0.0000000000000000000000000000000000000000002917 174.0
YYD3_k127_2933165_0 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 316.0
YYD3_k127_2941638_0 DNA topological change K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006599 288.0
YYD3_k127_2941638_1 helix_turn_helix, arabinose operon control protein - - - 0.00003744 48.0
YYD3_k127_2944282_0 myo-inosose-2 dehydratase activity - - - 0.00000000000000000000000000000000000000000000000001002 188.0
YYD3_k127_2944282_1 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000001285 137.0
YYD3_k127_2944282_2 - - - - 0.000000000000000000004524 106.0
YYD3_k127_2944282_3 - - - - 0.0000000000000000003976 98.0
YYD3_k127_2944282_4 - - - - 0.0000000000000006731 84.0
YYD3_k127_2944282_5 - - - - 0.0000000000186 76.0
YYD3_k127_2944892_0 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 380.0
YYD3_k127_2944892_1 COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005939 302.0
YYD3_k127_2944892_2 PFAM intradiol ring-cleavage dioxygenase K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000004483 249.0
YYD3_k127_2944892_3 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000005722 233.0
YYD3_k127_2944892_4 helix_turn_helix gluconate operon transcriptional repressor K07978,K07979 - - 0.000000000000000000000000001748 123.0
YYD3_k127_2944892_5 NMT1-like family K02051 - - 0.00000004568 64.0
YYD3_k127_2981739_0 efflux transmembrane transporter activity - - - 3.346e-251 805.0
YYD3_k127_2981739_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 306.0
YYD3_k127_2981739_2 Pfam:DUF2029 - - - 0.000000000007512 76.0
YYD3_k127_2981739_3 PIN domain - - - 0.000000003385 61.0
YYD3_k127_2992867_0 lipolytic protein G-D-S-L family - - - 1.676e-222 700.0
YYD3_k127_2992867_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 332.0
YYD3_k127_2992867_2 Bile acid K03453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001242 275.0
YYD3_k127_2992867_3 Belongs to the SOS response-associated peptidase family - - - 0.000000000000000000000000000000000000000000000003643 183.0
YYD3_k127_2992867_4 BON domain - - - 0.0000000000000000000000000000000000000009025 155.0
YYD3_k127_2996004_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000027 234.0
YYD3_k127_2996004_1 Dehydratase family - - - 0.00000000000000000000000000000000000000000000000000005453 211.0
YYD3_k127_2996004_2 HIT family K02503 - - 0.0000000000000000000000000000000000000000003418 160.0
YYD3_k127_2996004_3 Domain of unknown function (DUF4416) - - - 0.0000000000000000000000000000000000000000008074 160.0
YYD3_k127_2996004_4 glyoxalase III activity K00970 - 2.7.7.19 0.00000000000000000000000000001646 121.0
YYD3_k127_2996004_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000001472 87.0
YYD3_k127_3000954_0 Pfam Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 320.0
YYD3_k127_3000954_1 Ku70/Ku80 beta-barrel domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007267 266.0
YYD3_k127_3000954_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000001878 207.0
YYD3_k127_3000954_3 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000436 182.0
YYD3_k127_3000954_4 protein with SCP PR1 domains - - - 0.0000000000000000000000000000000000000000003313 166.0
YYD3_k127_3000954_5 - - - - 0.000000000000000000001048 100.0
YYD3_k127_3000954_6 Belongs to the UPF0235 family K09131 - - 0.0000000000000006063 81.0
YYD3_k127_3000954_7 - - - - 0.000005071 50.0
YYD3_k127_3032777_0 response regulator - - - 1.34e-198 629.0
YYD3_k127_3032777_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003147 460.0
YYD3_k127_3032777_2 Transposase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 315.0
YYD3_k127_3032777_3 Phage integrase, N-terminal SAM-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001371 231.0
YYD3_k127_3032777_4 PAS fold - - - 0.00000006821 57.0
YYD3_k127_3045228_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002078 273.0
YYD3_k127_3045228_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0000000000000002158 79.0
YYD3_k127_3092931_0 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 4.076e-221 689.0
YYD3_k127_3092931_1 Amino-acid N-acetyltransferase K14682 - 2.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009288 520.0
YYD3_k127_3092931_2 WD40 repeats - - - 0.00000000466 61.0
YYD3_k127_3092931_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000007478 58.0
YYD3_k127_311111_0 Peptidase, M20 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000807 295.0
YYD3_k127_311111_1 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000001262 195.0
YYD3_k127_311111_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K11991 - 3.5.4.1,3.5.4.33 0.000000000000000000000000000000000000000000000003315 176.0
YYD3_k127_311111_3 amine dehydrogenase activity - - - 0.00000000000000000000764 99.0
YYD3_k127_311111_4 Carboxypeptidase regulatory-like domain - - - 0.000000000168 70.0
YYD3_k127_311111_5 LysM domain - - - 0.000008543 58.0
YYD3_k127_311111_6 Recombinase zinc beta ribbon domain - - - 0.00007344 45.0
YYD3_k127_3128029_0 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 395.0
YYD3_k127_3128029_1 Carboxypeptidase regulatory-like domain - - - 0.000000000003571 79.0
YYD3_k127_3128029_2 Tetratricopeptide repeat - - - 0.000000495 62.0
YYD3_k127_3129000_0 Mn2 dependent serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 374.0
YYD3_k127_3129000_1 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004592 282.0
YYD3_k127_3129000_10 CHAD - - - 0.0009997 50.0
YYD3_k127_3129000_2 Cytochrome C biogenesis protein K06196,K12267 - 1.8.4.11,1.8.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000001071 256.0
YYD3_k127_3129000_3 3'(2'),5'-bisphosphate nucleotidase activity K01082 - 3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000007719 243.0
YYD3_k127_3129000_4 shikimate 3-dehydrogenase (NADP+) activity K00800,K10669 GO:0003674,GO:0003824,GO:0003866,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19,2.7.1.160 0.0000000000000000000000000000000000000000000000000003586 189.0
YYD3_k127_3129000_5 adenylylsulfate kinase activity K00860,K00955 - 2.7.1.25,2.7.7.4 0.000000000000000000000000000000000000000001067 162.0
YYD3_k127_3129000_6 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000000000000000000000157 145.0
YYD3_k127_3129000_7 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.000000000000000000000000000000002062 136.0
YYD3_k127_3129000_8 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000003698 127.0
YYD3_k127_3129000_9 COG2172 Anti-sigma regulatory factor (Ser Thr protein kinase) K04757 - 2.7.11.1 0.00000000000000000000003174 106.0
YYD3_k127_3140549_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006423 629.0
YYD3_k127_3140549_1 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 526.0
YYD3_k127_3140549_2 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007457 470.0
YYD3_k127_3140549_3 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003575 337.0
YYD3_k127_3140549_4 HlyD family secretion protein K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002833 275.0
YYD3_k127_3140549_5 Alpha-L-arabinofuranosidase B, catalytic - - - 0.00000000000000001593 83.0
YYD3_k127_3140549_6 Domain of unknown function DUF302 - - - 0.0000000005776 61.0
YYD3_k127_3140549_7 Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions K02636 - 1.10.9.1 0.000000009758 59.0
YYD3_k127_3142324_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 4.236e-211 666.0
YYD3_k127_3142324_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 383.0
YYD3_k127_3142324_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004066 289.0
YYD3_k127_3142324_3 phosphoribosyltransferase K07100 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003954 270.0
YYD3_k127_3142324_4 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000001686 152.0
YYD3_k127_3142324_5 dehydrogenase e1 component K00164 - 1.2.4.2 0.000000000000000000000000000000000002957 140.0
YYD3_k127_3156754_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147 GO:0000175,GO:0000178,GO:0000932,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354,GO:1990904 3.1.13.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009234 382.0
YYD3_k127_3156754_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004747 347.0
YYD3_k127_3156754_2 - - - - 0.00000000000000000000000000000000007993 151.0
YYD3_k127_3156754_3 - - - - 0.0000000000000000000000000008583 124.0
YYD3_k127_3156754_4 von Willebrand factor, type A - - - 0.00000000000000000000000002355 119.0
YYD3_k127_3156754_5 - - - - 0.0000000000000000000000001022 110.0
YYD3_k127_3156754_6 Short-chain dehydrogenase reductase sdr - - - 0.000000000004026 74.0
YYD3_k127_3164899_0 flavin-nucleotide-binding protein structurally related to pyridoxine 5-phosphate oxidase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007766 396.0
YYD3_k127_3164899_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000005569 250.0
YYD3_k127_3164899_2 pyridoxamine 5-phosphate - - - 0.0000000002044 66.0
YYD3_k127_3167692_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 536.0
YYD3_k127_3167692_1 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 292.0
YYD3_k127_3167692_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000003748 197.0
YYD3_k127_3167692_3 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000002927 143.0
YYD3_k127_3167692_4 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.000000000000000000000000000000000005771 140.0
YYD3_k127_3167692_5 Protein of unknown function (DUF512) - - - 0.000000000000000001257 90.0
YYD3_k127_318954_0 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003067 587.0
YYD3_k127_318954_1 TRAP transporter solute receptor, TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 303.0
YYD3_k127_318954_2 Large extracellular alpha-helical protein K06894 - - 0.00000000000003429 78.0
YYD3_k127_318954_3 Phosphotransferase enzyme family - - - 0.00000000000004932 79.0
YYD3_k127_318954_4 Carboxypeptidase regulatory-like domain - - - 0.0000001411 62.0
YYD3_k127_318954_5 Sigma-70 region 2 K03088 - - 0.000000155 57.0
YYD3_k127_318954_6 Phosphotransferase enzyme family - - - 0.00001542 54.0
YYD3_k127_3210701_0 COG0635 Coproporphyrinogen III oxidase and related Fe-S - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009208 480.0
YYD3_k127_3210701_1 COG1541 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 397.0
YYD3_k127_3210701_2 Thioesterase superfamily K07107 - - 0.000000000000000000000000001044 117.0
YYD3_k127_3219329_0 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000000000000000000000000000000000000000000004221 190.0
YYD3_k127_3219329_1 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000001498 180.0
YYD3_k127_3219329_2 - - - - 0.00000000000000000000000000000008562 130.0
YYD3_k127_3219329_3 - - - - 0.000000000000008559 79.0
YYD3_k127_3219329_4 - - - - 0.00000000003415 66.0
YYD3_k127_3219329_5 - - - - 0.0000000005866 63.0
YYD3_k127_3219329_6 - - - - 0.0000000279 67.0
YYD3_k127_3219588_0 von Willebrand factor, type A - - - 0.000000000000000000000000000000000000000000000000000000002673 218.0
YYD3_k127_3219588_1 Aerotolerance regulator N-terminal - - - 0.000000000000000000000000000001799 138.0
YYD3_k127_3227182_0 cell wall hydrolase K01448 - 3.5.1.28 0.00000000000005949 84.0
YYD3_k127_3227182_1 Belongs to the P(II) protein family K04751,K04752 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000001777 55.0
YYD3_k127_3248411_0 Peptidase M16C associated K06972 - - 1.79e-284 908.0
YYD3_k127_3248411_1 response to abiotic stimulus K06867 - - 0.000000000000000000000000000000000000000000000000000000008899 210.0
YYD3_k127_326100_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.174e-225 727.0
YYD3_k127_326100_1 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 520.0
YYD3_k127_326100_10 PFAM peptidase S8 and S53 subtilisin kexin sedolisin K08651 - 3.4.21.66 0.00000000000000000000000000000000000000000000003576 181.0
YYD3_k127_326100_11 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000000000195 162.0
YYD3_k127_326100_12 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000001939 148.0
YYD3_k127_326100_13 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000001416 139.0
YYD3_k127_326100_14 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000001724 94.0
YYD3_k127_326100_15 Protein of unknown function (DUF503) K09764 - - 0.000000000000000007538 86.0
YYD3_k127_326100_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 458.0
YYD3_k127_326100_3 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 298.0
YYD3_k127_326100_4 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003728 276.0
YYD3_k127_326100_5 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000001533 269.0
YYD3_k127_326100_6 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000361 199.0
YYD3_k127_326100_7 PFAM glycosyl transferase family 9 K02841 - - 0.00000000000000000000000000000000000000000000000000004215 200.0
YYD3_k127_326100_8 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000003154 185.0
YYD3_k127_326100_9 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.0000000000000000000000000000000000000000000000002136 184.0
YYD3_k127_3278808_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 561.0
YYD3_k127_3278808_1 surface antigen variable number - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 347.0
YYD3_k127_3278808_2 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000366 217.0
YYD3_k127_3278808_3 Biotin-requiring enzyme - - - 0.00000000000000000002289 100.0
YYD3_k127_3278808_4 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000004816 87.0
YYD3_k127_3278808_5 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000001864 59.0
YYD3_k127_3278808_6 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation - - - 0.0005731 50.0
YYD3_k127_3279533_0 phosphorelay signal transduction system K07712,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 471.0
YYD3_k127_3279533_1 response regulator, receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005169 289.0
YYD3_k127_3279533_2 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.000000000000000000000000000000000000000000000000000000000000000002287 233.0
YYD3_k127_3279533_3 Response regulator, receiver K11443 - - 0.0000000000000000000000000006443 120.0
YYD3_k127_3279533_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00002338 55.0
YYD3_k127_3285131_0 Dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 431.0
YYD3_k127_3285131_1 2OG-Fe(II) oxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007422 349.0
YYD3_k127_3285131_10 SnoaL-like domain - - - 0.00000002879 63.0
YYD3_k127_3285131_2 glutathionylspermidine amidase activity K01460 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008884,GO:0008885,GO:0016787,GO:0016810,GO:0016811,GO:0016874,GO:0016879,GO:0016880,GO:0044424,GO:0044444,GO:0044464 3.5.1.78,6.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 316.0
YYD3_k127_3285131_3 Zinc-binding dehydrogenase K12957 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 300.0
YYD3_k127_3285131_4 6-phosphogluconolactonase K00851,K01057 - 2.7.1.12,3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000006435 254.0
YYD3_k127_3285131_5 COG0500 SAM-dependent methyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002396 250.0
YYD3_k127_3285131_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000259 224.0
YYD3_k127_3285131_7 - - - - 0.000000000000000000000000000000000000000002656 166.0
YYD3_k127_3285131_8 - - - - 0.000000000000000000000000000000000000001991 159.0
YYD3_k127_3285131_9 phosphorelay signal transduction system K02477,K07705,K21696 GO:0000156,GO:0000160,GO:0003674,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007 - 0.000000000000000000000000000000000000003666 154.0
YYD3_k127_3303913_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006726 533.0
YYD3_k127_3303913_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004517 523.0
YYD3_k127_3303913_2 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000006379 139.0
YYD3_k127_3303913_3 PIN domain - - - 0.0000000000000000000003779 100.0
YYD3_k127_3303913_4 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000004095 58.0
YYD3_k127_3308382_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004394 473.0
YYD3_k127_3308382_1 ATPase activity K01990,K09697 - 3.6.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 354.0
YYD3_k127_3308382_10 Domain of unknown function (DUF4340) - - - 0.00000000000000009011 93.0
YYD3_k127_3308382_2 ABC-type uncharacterized transport system K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 337.0
YYD3_k127_3308382_3 formate dehydrogenase (NAD+) activity K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000771 322.0
YYD3_k127_3308382_4 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000002185 214.0
YYD3_k127_3308382_5 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000005114 182.0
YYD3_k127_3308382_6 Tetratricopeptide repeat - - - 0.0000000000000000000000000000009957 124.0
YYD3_k127_3308382_7 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000005784 113.0
YYD3_k127_3308382_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000001235 99.0
YYD3_k127_3308382_9 Sigma-70, region 4 K03088 - - 0.0000000000000000001184 95.0
YYD3_k127_3323337_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 2.806e-230 735.0
YYD3_k127_3323337_1 Malate synthase K01638 - 2.3.3.9 8.071e-203 639.0
YYD3_k127_3323337_10 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000004298 212.0
YYD3_k127_3323337_11 COG0500 SAM-dependent methyltransferases - - - 0.000000000000000000000000000000000000000000000000001968 189.0
YYD3_k127_3323337_12 ethanolamine catabolic process K04027 - - 0.00000000000000000000000000000000000000001277 154.0
YYD3_k127_3323337_13 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028,K08697 - - 0.000000000000000000000000000000003114 130.0
YYD3_k127_3323337_14 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716 - 0.00000000000000000000000000000007383 126.0
YYD3_k127_3323337_15 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 - - 0.000000000006527 69.0
YYD3_k127_3323337_2 NHL repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000612 472.0
YYD3_k127_3323337_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 447.0
YYD3_k127_3323337_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000738 258.0
YYD3_k127_3323337_6 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000000000000000001394 241.0
YYD3_k127_3323337_7 D-arabinono-1,4-lactone oxidase K00594 - 1.1.3.41 0.0000000000000000000000000000000000000000000000000000000000000008973 235.0
YYD3_k127_3323337_8 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000002876 234.0
YYD3_k127_3323337_9 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000003573 211.0
YYD3_k127_3323842_0 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000321 265.0
YYD3_k127_3323842_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000003111 264.0
YYD3_k127_3323842_2 PASTA domain K12132 - 2.7.11.1 0.0000000000000000000000000001353 124.0
YYD3_k127_3337563_0 Carboxypeptidase regulatory-like domain - - - 1.05e-248 788.0
YYD3_k127_3337563_1 oxidoreductase activity - - - 2.458e-205 661.0
YYD3_k127_3337563_2 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000001322 201.0
YYD3_k127_3337563_3 - - - - 0.000000000000000000000003655 112.0
YYD3_k127_3337563_4 - - - - 0.0000000000000000000000219 106.0
YYD3_k127_3346938_0 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008226 331.0
YYD3_k127_3346938_1 - - - - 0.0000000000000000000000000000000000000000000000925 181.0
YYD3_k127_3346938_3 Phosphoglycerate mutase family - - - 0.000000000000000006819 90.0
YYD3_k127_3354125_0 Polysaccharide biosynthesis protein K03328 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 458.0
YYD3_k127_3354125_1 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 398.0
YYD3_k127_3354125_2 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000000000004651 189.0
YYD3_k127_3354125_3 - - - - 0.0000000000000000000000000000000000000000007896 161.0
YYD3_k127_3354125_5 Pectate lyase superfamily protein - - - 0.00000000000001276 76.0
YYD3_k127_3395484_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000001563 126.0
YYD3_k127_3395484_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000009719 87.0
YYD3_k127_3398054_0 Carboxypeptidase regulatory-like domain - - - 1.293e-299 942.0
YYD3_k127_3398054_1 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004955 487.0
YYD3_k127_3404305_0 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.00000000000000000000000000000000000000000000001869 178.0
YYD3_k127_3404305_1 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000008438 127.0
YYD3_k127_3404305_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000005158 108.0
YYD3_k127_3404305_3 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.00000000000000000000000009949 110.0
YYD3_k127_3404592_0 MacB-like periplasmic core domain - - - 2.18e-242 775.0
YYD3_k127_3404592_1 Histidine kinase K07683 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 334.0
YYD3_k127_3404592_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. K12266 - - 0.0000000000006915 71.0
YYD3_k127_3404592_3 monooxygenase activity - - - 0.0000418 49.0
YYD3_k127_3406492_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 566.0
YYD3_k127_3406492_1 Belongs to the MIP aquaporin (TC 1.A.8) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001374 236.0
YYD3_k127_3427441_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2115.0
YYD3_k127_3427441_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046,K13797 GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.0 1720.0
YYD3_k127_3427441_2 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 325.0
YYD3_k127_3427441_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008883 260.0
YYD3_k127_3427441_4 Ribosomal protein L11/L12 K02867 - - 0.00000000000000000000000000000000000000000000000000000000000000005675 224.0
YYD3_k127_3427441_5 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000009225 183.0
YYD3_k127_3427441_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.000000000000000000000000000000000000000000006457 166.0
YYD3_k127_3427441_7 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000005421 75.0
YYD3_k127_3427441_8 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03073 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000004684 57.0
YYD3_k127_343105_0 xanthine dehydrogenase activity - - - 0.0 1151.0
YYD3_k127_343105_1 Circularly permuted ATP-grasp type 2 - - - 1.451e-262 835.0
YYD3_k127_343105_2 Circularly permuted ATP-grasp type 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000516 611.0
YYD3_k127_343105_3 A predicted alpha-helical domain with a conserved ER motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007997 402.0
YYD3_k127_343105_4 PQQ-like domain K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000674 339.0
YYD3_k127_343105_5 Domain of unknown function (DUF4010) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007806 338.0
YYD3_k127_343105_6 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 299.0
YYD3_k127_343105_7 2Fe-2S -binding domain protein K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000001026 264.0
YYD3_k127_343105_8 Dehydrogenase K00114,K17760,K20936,K21676,K22473 - 1.1.2.8,1.1.2.9,1.1.5.5,1.1.9.1,1.17.2.2 0.0000000007846 66.0
YYD3_k127_3440484_0 amino acid - - - 0.0 1057.0
YYD3_k127_3440484_1 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 428.0
YYD3_k127_3440484_2 Short-chain dehydrogenase reductase SDR K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000913 285.0
YYD3_k127_3440484_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000001489 176.0
YYD3_k127_3440484_4 protein import - - - 0.0000000000000000000000000000004271 129.0
YYD3_k127_3445996_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202 511.0
YYD3_k127_3445996_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 337.0
YYD3_k127_3445996_2 ZIP Zinc transporter K07238,K16267 - - 0.0000000000000000000000000000000000000000000000000000000000000000001772 243.0
YYD3_k127_3445996_3 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000000000006163 164.0
YYD3_k127_3445996_4 PFAM Iron sulphur-containing domain, CDGSH-type - - - 0.000000000000000000007153 94.0
YYD3_k127_3445996_5 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000006889 81.0
YYD3_k127_3445996_6 RNA polymerase-binding protein DksA K06204 - - 0.0000000000000002613 84.0
YYD3_k127_3450292_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 5.695e-268 846.0
YYD3_k127_3450292_1 PFAM peptidase U62 modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 573.0
YYD3_k127_3450292_10 von Willebrand factor (vWF) type A domain K07114 - - 0.0000000000001472 81.0
YYD3_k127_3450292_11 positive regulation of growth K01081 - 3.1.3.5 0.0000000000002213 73.0
YYD3_k127_3450292_2 PFAM aminotransferase, class I K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009334 489.0
YYD3_k127_3450292_3 Putative modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002935 327.0
YYD3_k127_3450292_4 A G-specific K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001836 254.0
YYD3_k127_3450292_5 ATP-dependent DNA helicase RecG K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000001663 211.0
YYD3_k127_3450292_6 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000001589 206.0
YYD3_k127_3450292_7 Conserved hypothetical protein 95 - - - 0.0000000000000000000000000000000000000000000000000307 185.0
YYD3_k127_3450292_8 Radical SAM K22227 - - 0.0000000000000000000000000000000000006293 153.0
YYD3_k127_3450292_9 PIN domain - - - 0.00000000000000000000000000000003663 130.0
YYD3_k127_3460575_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 3.732e-273 849.0
YYD3_k127_3460575_1 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 345.0
YYD3_k127_3460575_2 Bacterial extracellular solute-binding proteins, family 3 K16254 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002529 273.0
YYD3_k127_3460575_3 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000005537 100.0
YYD3_k127_3460575_4 cytochrome - - - 0.000000000008292 73.0
YYD3_k127_3462585_0 PFAM Alcohol dehydrogenase GroES-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 580.0
YYD3_k127_3462585_1 ATP dependent DNA ligase C terminal region K10747 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016874,GO:0016886,GO:0022616,GO:0030312,GO:0033554,GO:0034641,GO:0034645,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576 6.5.1.1,6.5.1.6,6.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004082 377.0
YYD3_k127_3462585_2 Fungal family of unknown function (DUF1776) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 312.0
YYD3_k127_3462585_3 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000005302 170.0
YYD3_k127_3462585_4 hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000004257 127.0
YYD3_k127_3462585_5 bacterial OsmY and nodulation domain - - - 0.00000000000000000000000005551 120.0
YYD3_k127_3462585_6 - - - - 0.00000000000000000868 86.0
YYD3_k127_3486350_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 325.0
YYD3_k127_3486350_1 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000008997 214.0
YYD3_k127_3486350_2 Stage II sporulation protein M - - - 0.00000000000001258 78.0
YYD3_k127_3495402_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008278 507.0
YYD3_k127_3495402_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 498.0
YYD3_k127_3495402_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 366.0
YYD3_k127_3495402_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000001047 271.0
YYD3_k127_3495402_4 TIGRFAM TonB family protein K03832 - - 0.00000000000000000000000000000000000000000000000000001228 203.0
YYD3_k127_3495402_5 Signal peptidase (SPase) II K03101 - 3.4.23.36 0.0000000000000000000000000000001761 137.0
YYD3_k127_3495402_6 - - - - 0.0000000000000000000000000000002053 128.0
YYD3_k127_3495402_7 peptidyl-tyrosine sulfation - - - 0.000000000000005273 87.0
YYD3_k127_3495402_8 - - - - 0.00000008406 56.0
YYD3_k127_3504079_0 transmembrane transport K13893 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004633 538.0
YYD3_k127_3504079_1 ABC transporter (Permease) K02033,K13894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 412.0
YYD3_k127_3504079_2 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 403.0
YYD3_k127_3504079_3 microcin transport K13895 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 396.0
YYD3_k127_3504079_4 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008484 379.0
YYD3_k127_3504079_5 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.0000000000000000000000000000000000000000000001654 173.0
YYD3_k127_3504079_6 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000000000000000000000000339 154.0
YYD3_k127_3504079_7 transmembrane transport K13893 - - 0.0000000000002376 73.0
YYD3_k127_350886_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 4.714e-316 985.0
YYD3_k127_350886_1 signal peptide processing K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000004177 236.0
YYD3_k127_350886_2 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.000000000000000000000000000000000000000000000000000000006844 206.0
YYD3_k127_350886_3 Sodium:sulfate symporter transmembrane region K14445 - - 0.00000000000000000000000000000000000001437 150.0
YYD3_k127_350886_4 PFAM sodium K14445 - - 0.0000000000000000000000000000005179 138.0
YYD3_k127_350886_5 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000653 124.0
YYD3_k127_350886_7 Peptidase family M1 domain - - - 0.000001737 56.0
YYD3_k127_3520424_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 329.0
YYD3_k127_3520424_1 Protein of unknown function (DUF4197) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009277 267.0
YYD3_k127_3520424_2 PFAM 6-phosphogluconate dehydrogenase NAD-binding K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000004949 262.0
YYD3_k127_3520424_3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000685 186.0
YYD3_k127_3524992_0 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009344 359.0
YYD3_k127_3524992_1 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000005076 248.0
YYD3_k127_3524992_2 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000000009136 121.0
YYD3_k127_3524992_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000002128 110.0
YYD3_k127_3524992_4 Carboxypeptidase regulatory-like domain - - - 0.0005173 52.0
YYD3_k127_3526546_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000006378 229.0
YYD3_k127_3526546_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000088 199.0
YYD3_k127_3526546_2 Glycosyl transferase, family 2 K12984 - - 0.0000000000000001508 81.0
YYD3_k127_3542580_0 protein conserved in bacteria - - - 4.548e-201 642.0
YYD3_k127_3542580_1 Molybdopterin oxidoreductase Fe4S4 domain K08357 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007492 539.0
YYD3_k127_3542580_10 Protein of unknown function (DUF3341) - - - 0.000000000000183 77.0
YYD3_k127_3542580_2 mannitol 2-dehydrogenase activity K11690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 456.0
YYD3_k127_3542580_3 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006315 440.0
YYD3_k127_3542580_4 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 324.0
YYD3_k127_3542580_5 PFAM TRAP dicarboxylate transporter- DctP subunit - - - 0.000000000000000000000000000000000000000000004706 177.0
YYD3_k127_3542580_6 TRAP transporter T-component - - - 0.0000000000000000000000000000000000000002677 156.0
YYD3_k127_3542580_7 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000001664 139.0
YYD3_k127_3542580_8 Universal stress protein family - - - 0.0000000000000000004899 93.0
YYD3_k127_3542580_9 hemerythrin HHE cation binding domain - - - 0.00000000000001175 81.0
YYD3_k127_3625364_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 9.676e-264 820.0
YYD3_k127_3625364_1 membrane - - - 0.0000000000000000000000000000000001018 137.0
YYD3_k127_3625364_2 response regulator - - - 0.0000000000000000000000004304 116.0
YYD3_k127_3625364_3 Dehydrogenase K00117 - 1.1.5.2 0.0000000000000003628 83.0
YYD3_k127_3627812_0 CotH kinase protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002099 254.0
YYD3_k127_3627812_1 - - - - 0.000000000000000000000000000000000000000000000000000000000006185 221.0
YYD3_k127_3627812_2 domain protein K14194 - - 0.00000000000000000000000000000000000000000000000000000006519 217.0
YYD3_k127_3627812_3 PQQ-like domain K05889 - 1.1.2.6 0.000000000000000000000000000000000000000000000000000004776 199.0
YYD3_k127_3627812_4 Outer membrane protein beta-barrel family - - - 0.0001175 47.0
YYD3_k127_3647343_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168,K18707 - 2.8.4.3,2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005761 334.0
YYD3_k127_3647343_1 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.00000000000000000000000000009144 122.0
YYD3_k127_3647343_2 Smr domain - - - 0.000000000000000000002138 99.0
YYD3_k127_3647343_3 Putative phosphatase (DUF442) - - - 0.00000000000000000004489 96.0
YYD3_k127_3648013_0 - - - - 0.00000000000000000000000000000000001074 156.0
YYD3_k127_3648013_1 Glutamine synthetase type III K01915 - 6.3.1.2 0.000000000000000002446 87.0
YYD3_k127_3649367_0 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 492.0
YYD3_k127_3649367_1 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 329.0
YYD3_k127_3649367_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000613 240.0
YYD3_k127_3649367_3 - - - - 0.00000000000000000000000000000001718 132.0
YYD3_k127_3649367_4 - - - - 0.00000000005293 64.0
YYD3_k127_3655531_0 PFAM Type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 333.0
YYD3_k127_3655531_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000001438 243.0
YYD3_k127_3655531_2 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000007496 202.0
YYD3_k127_3655531_3 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000003728 63.0
YYD3_k127_3662537_0 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 345.0
YYD3_k127_3662537_1 protein conserved in bacteria - - - 0.0000000000000000000000000002018 125.0
YYD3_k127_3662537_2 - - - - 0.0000002628 55.0
YYD3_k127_3700522_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000001047 252.0
YYD3_k127_3700522_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000003051 221.0
YYD3_k127_3701270_0 Phosphofructokinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 579.0
YYD3_k127_3701270_1 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 362.0
YYD3_k127_3701270_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins - - - 0.00007938 55.0
YYD3_k127_3706356_0 Putative glutamine amidotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 469.0
YYD3_k127_3706356_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 410.0
YYD3_k127_3706356_2 Tetratricopeptide repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 422.0
YYD3_k127_3706356_3 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 289.0
YYD3_k127_3706356_4 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000000000000000000000001961 184.0
YYD3_k127_3706356_5 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000004172 147.0
YYD3_k127_3706356_6 Aerotolerance regulator N-terminal - - - 0.00000003662 64.0
YYD3_k127_3706356_7 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00008779 49.0
YYD3_k127_3706397_0 PFAM Type II secretion system F domain K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 453.0
YYD3_k127_3706397_1 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002523 401.0
YYD3_k127_3706397_2 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000002482 238.0
YYD3_k127_3706397_3 Histidine kinase K07652 - 2.7.13.3 0.0002055 53.0
YYD3_k127_371108_0 DNA polymerase Ligase (LigD) - - - 0.0 1020.0
YYD3_k127_371108_1 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007625 364.0
YYD3_k127_371108_2 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002279 274.0
YYD3_k127_3712672_0 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity K03429 - 2.4.1.315 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 499.0
YYD3_k127_3712672_1 lipid kinase, YegS Rv2252 BmrU family - - - 0.00000000000000000000000000000000000000000000000000007183 198.0
YYD3_k127_3712672_2 COGs COG4339 conserved - - - 0.0000000000000000000000000000000000000007227 152.0
YYD3_k127_372037_0 Rifampin ADP-ribosyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003603 347.0
YYD3_k127_372037_1 G8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002859 309.0
YYD3_k127_372037_2 DNA-templated transcription, initiation - - - 0.0000000000000000000000000000904 119.0
YYD3_k127_372037_3 Tetratricopeptide repeats - - - 0.00009613 48.0
YYD3_k127_3720584_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 375.0
YYD3_k127_3720584_1 - - - - 0.0000000000000000000000000000000000000000000000000000004509 202.0
YYD3_k127_3720584_2 S4 RNA-binding domain K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000003057 205.0
YYD3_k127_3720584_3 alpha-ribazole phosphatase activity K01834,K02226,K15634,K22305 - 3.1.3.3,3.1.3.73,5.4.2.11,5.4.2.12 0.000000000000000000000000000000000000003019 155.0
YYD3_k127_3720584_4 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000004632 150.0
YYD3_k127_3720584_5 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000001544 106.0
YYD3_k127_3720584_6 Collagenase K08303 - - 0.00000000000000000000783 93.0
YYD3_k127_3728654_0 Bacterial protein of unknown function (DUF853) - - - 1.233e-211 670.0
YYD3_k127_3728654_1 Nicotinate phosphoribosyltransferase (NAPRTase) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 527.0
YYD3_k127_3728654_10 GDSL-like Lipase/Acylhydrolase - - - 0.0002295 48.0
YYD3_k127_3728654_2 isochorismatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004506 438.0
YYD3_k127_3728654_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000607 280.0
YYD3_k127_3728654_4 Large-conductance mechanosensitive channel, MscL K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.000000000000000000000000000000000000000000000000000004241 193.0
YYD3_k127_3728654_5 - - - - 0.000000000000000000000000000000003086 142.0
YYD3_k127_3728654_6 - - - - 0.0000000000000000000001778 104.0
YYD3_k127_3728654_7 Polymer-forming cytoskeletal - - - 0.0000000000000007273 83.0
YYD3_k127_3728654_8 Protein of unknown function, DUF481 K07283 - - 0.00000000001599 74.0
YYD3_k127_3728654_9 response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.000000007808 61.0
YYD3_k127_3733970_0 Planctomycete cytochrome C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 311.0
YYD3_k127_3733970_1 ErfK YbiS YcfS YnhG family protein K21470 - - 0.0000000000000000000000000000000000000001513 153.0
YYD3_k127_3745790_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 561.0
YYD3_k127_3745790_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 541.0
YYD3_k127_3745790_10 Coenzyme A transferase K01029 - 2.8.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006742 321.0
YYD3_k127_3745790_11 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001614 284.0
YYD3_k127_3745790_12 with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine K01664 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006575,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009108,GO:0009308,GO:0009309,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042398,GO:0042401,GO:0042430,GO:0042435,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046820,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 2.6.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006881 267.0
YYD3_k127_3745790_13 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 GO:0003674,GO:0003824,GO:0008110,GO:0008483,GO:0016740,GO:0016769 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000007317 255.0
YYD3_k127_3745790_14 TIGRFAM phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000006276 247.0
YYD3_k127_3745790_15 imidazoleglycerol-phosphate dehydratase K00817,K01089,K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.9,3.1.3.15,4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000163 238.0
YYD3_k127_3745790_16 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000002255 234.0
YYD3_k127_3745790_17 Phosphoribosyl-AMP cyclohydrolase K01496,K11755 - 3.5.4.19,3.6.1.31 0.00000000000000000000000000000000000000000000000000000000000000005197 229.0
YYD3_k127_3745790_18 Belongs to the TrpC family K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000009815 212.0
YYD3_k127_3745790_19 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000001137 205.0
YYD3_k127_3745790_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 525.0
YYD3_k127_3745790_20 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765,K02502 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000000003485 200.0
YYD3_k127_3745790_21 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000003655 184.0
YYD3_k127_3745790_22 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000113 169.0
YYD3_k127_3745790_23 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000006016 118.0
YYD3_k127_3745790_24 - - - - 0.00000000000000000000000006358 112.0
YYD3_k127_3745790_25 Chorismate mutase type II K04093 - 5.4.99.5 0.0000000000000000005264 89.0
YYD3_k127_3745790_26 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine - - - 0.0001124 46.0
YYD3_k127_3745790_3 3-beta hydroxysteroid dehydrogenase/isomerase family K01710,K08678 - 4.1.1.35,4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 470.0
YYD3_k127_3745790_4 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 394.0
YYD3_k127_3745790_5 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005797 389.0
YYD3_k127_3745790_6 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 364.0
YYD3_k127_3745790_7 Coenzyme A transferase K01028 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003938 342.0
YYD3_k127_3745790_8 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 340.0
YYD3_k127_3745790_9 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004062 328.0
YYD3_k127_3752149_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000003244 219.0
YYD3_k127_3752149_1 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000002698 127.0
YYD3_k127_3752149_2 PFAM WD40-like beta Propeller - - - 0.0000000000000000000000002262 122.0
YYD3_k127_3752149_3 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.0001242 44.0
YYD3_k127_3757961_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001031 288.0
YYD3_k127_3757961_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007543 278.0
YYD3_k127_3757961_2 tRNA pseudouridine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001933 270.0
YYD3_k127_3757961_3 Radical SAM superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000001445 238.0
YYD3_k127_3767055_0 Cys/Met metabolism PLP-dependent enzyme K10907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 537.0
YYD3_k127_3767055_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 538.0
YYD3_k127_3767055_2 Trypsin K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000208 195.0
YYD3_k127_3767055_3 TIGRFAM TonB K03832 - - 0.00000000000000002942 95.0
YYD3_k127_3767055_4 von Willebrand factor, type A K07114 - - 0.00000000003378 75.0
YYD3_k127_3777975_0 - - - - 0.0000000000000000000000000000000000000000000000000000000008603 209.0
YYD3_k127_3777975_1 - - - - 0.000000000000000000000000000004612 138.0
YYD3_k127_3777975_2 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000207 91.0
YYD3_k127_3777975_3 ECF sigma factor - - - 0.000000009442 61.0
YYD3_k127_3777975_4 ECF sigma factor - - - 0.00004849 48.0
YYD3_k127_3777975_5 ECF sigma factor - - - 0.0002896 45.0
YYD3_k127_379690_0 COG0515 Serine threonine protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000204 254.0
YYD3_k127_3802635_0 Belongs to the heat shock protein 70 family K04046 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 445.0
YYD3_k127_3802635_1 SMART ATPase, AAA type, core K05847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 312.0
YYD3_k127_3802635_2 Ankyrin repeats (3 copies) - - - 0.0000000000000000000000000000000000000000000000000000115 204.0
YYD3_k127_3802635_3 lactoylglutathione lyase activity K03088 - - 0.0000000000000000000000000000000000000002663 162.0
YYD3_k127_3802635_4 - - - - 0.000000000000004538 82.0
YYD3_k127_3802635_5 Sigma-70 region 2 K03088 - - 0.000000001101 65.0
YYD3_k127_3804005_0 Oligoendopeptidase F - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 542.0
YYD3_k127_3804005_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 310.0
YYD3_k127_3804005_10 Periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000007781 134.0
YYD3_k127_3804005_11 - - - - 0.000000000000000000000000003502 120.0
YYD3_k127_3804005_12 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K10819 - 2.7.13.3 0.0000000000000000000000002268 117.0
YYD3_k127_3804005_13 Domain of unknown function (DUF202) - - - 0.0000000000000000000000002371 109.0
YYD3_k127_3804005_14 - - - - 0.0000000000000000000001102 105.0
YYD3_k127_3804005_15 arylsulfatase A K01130 - 3.1.6.1 0.000005563 50.0
YYD3_k127_3804005_2 Protein of unknown function (DUF2950) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002354 283.0
YYD3_k127_3804005_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001441 268.0
YYD3_k127_3804005_4 Belongs to the DNA polymerase type-C family. DnaE2 subfamily K14162 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000003556 203.0
YYD3_k127_3804005_5 - - - - 0.000000000000000000000000000000000000000000000000002031 192.0
YYD3_k127_3804005_6 Short repeat of unknown function (DUF308) - - - 0.0000000000000000000000000000000000000000000000007947 181.0
YYD3_k127_3804005_7 recA bacterial DNA recombination protein - - - 0.00000000000000000000000000000000000000000000001337 181.0
YYD3_k127_3804005_9 Protein of unknown function (DUF3300) - - - 0.00000000000000000000000000000000001432 153.0
YYD3_k127_3804755_0 Phosphate acyltransferases K00655,K01897 - 2.3.1.51,6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 594.0
YYD3_k127_3804755_1 RibD C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 321.0
YYD3_k127_3804755_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 328.0
YYD3_k127_3804755_3 NYN domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003965 326.0
YYD3_k127_3804755_4 COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family - - - 0.0000000000000000000000000000009036 125.0
YYD3_k127_3804755_6 protein trimerization - - - 0.000000000000000002439 96.0
YYD3_k127_3826488_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001986 233.0
YYD3_k127_3826488_1 response to abiotic stimulus K06867 - - 0.00000000000000000000000000000000000000000000001686 190.0
YYD3_k127_3826488_2 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000000000002067 147.0
YYD3_k127_3826488_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000128 132.0
YYD3_k127_3831445_0 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 343.0
YYD3_k127_3831445_1 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000000000000000000000007493 194.0
YYD3_k127_3831445_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000001058 142.0
YYD3_k127_3831445_3 VIT family - - - 0.000000000000000000003713 98.0
YYD3_k127_3838779_0 alpha-L-arabinofuranosidase domain protein K01209 - 3.2.1.55 7.443e-215 679.0
YYD3_k127_3838779_1 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 325.0
YYD3_k127_3838779_2 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000000009896 150.0
YYD3_k127_3838779_3 - - - - 0.000000763 55.0
YYD3_k127_3838779_4 Highly conserved protein containing a thioredoxin domain K18581 - 3.2.1.180 0.000001063 55.0
YYD3_k127_3844668_0 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000007235 220.0
YYD3_k127_3844668_1 Protein of unknown function (DUF1442) - - - 0.0000000000000000000000000000000000000000000000000000000000003058 222.0
YYD3_k127_3844668_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000001194 177.0
YYD3_k127_3844668_3 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000001039 138.0
YYD3_k127_3844668_4 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000005534 121.0
YYD3_k127_3844668_5 competence protein - - - 0.000000000000000000000000000006123 130.0
YYD3_k127_3844668_6 - - - - 0.00000000000000000000004909 104.0
YYD3_k127_3845060_0 Belongs to the glycosyl hydrolase 67 family K01235 - 3.2.1.139 0.0 1163.0
YYD3_k127_3845060_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01706 - 4.2.1.40 2.648e-234 728.0
YYD3_k127_3845060_2 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006386 347.0
YYD3_k127_3845060_3 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.0000000000000000000000000000000000000000000000000003841 188.0
YYD3_k127_3855332_0 Carbon dioxide concentrating mechanism carboxysome shell protein K04027 - - 0.0000000000000000000000000000001938 125.0
YYD3_k127_3855332_1 TIGRFAM acetaldehyde dehydrogenase (acetylating) K00132 - 1.2.1.10 0.0000000000000000000000027 109.0
YYD3_k127_3855332_2 SMART helix-turn-helix domain protein - - - 0.00000000000000000000001244 111.0
YYD3_k127_3855332_3 Tetratricopeptide repeat - - - 0.0000004447 61.0
YYD3_k127_3855332_4 SMART RNA-processing protein HAT helix repeating-containing protein - - - 0.000005247 58.0
YYD3_k127_3855332_5 Tetratricopeptide repeat - - - 0.00003836 56.0
YYD3_k127_3862540_0 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 5.752e-198 630.0
YYD3_k127_3862540_1 Hydantoinase/oxoprolinase N-terminal region K01473 - 3.5.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969 399.0
YYD3_k127_3862540_2 von Willebrand factor, type A - - - 0.000000000000000000000000000000000415 144.0
YYD3_k127_3874615_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003059 380.0
YYD3_k127_3874615_1 Prephenate dehydratase K04518 - 4.2.1.51 0.00000000000000000000000000000000000000000000000879 178.0
YYD3_k127_3887260_0 type III restriction enzyme, res subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 336.0
YYD3_k127_3887260_1 Beta-lactamase superfamily domain K17837 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000005455 246.0
YYD3_k127_3887260_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001609 233.0
YYD3_k127_3891359_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 353.0
YYD3_k127_3891359_1 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001985 254.0
YYD3_k127_3891359_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000003093 165.0
YYD3_k127_3891359_3 protein SCO1 SenC K07152 - - 0.0000000000000000000000000000000000001408 154.0
YYD3_k127_3891359_4 Protein of unknown function (DUF420) K08976 - - 0.0000000000000000000000000000000000004049 143.0
YYD3_k127_3903155_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 3.597e-218 692.0
YYD3_k127_3903155_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 GO:0003674,GO:0003824,GO:0003908,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051409,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 2.1.1.63 0.00000000000000000000000000000000000000000000003887 175.0
YYD3_k127_3903155_2 DNA topological change - - - 0.000000000000000000002044 98.0
YYD3_k127_3906785_0 CHAT domain - - - 0.0000000000000000000000001381 124.0
YYD3_k127_3906785_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000292 109.0
YYD3_k127_3914690_0 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004017 442.0
YYD3_k127_3914690_1 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 339.0
YYD3_k127_3914690_2 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008889 289.0
YYD3_k127_3914690_3 NAD(P)H dehydrogenase (quinone) activity K03809 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114 1.6.5.2 0.0000009893 57.0
YYD3_k127_3916432_0 RNA polymerase recycling family C-terminal - - - 1.724e-256 815.0
YYD3_k127_3916432_1 PFAM Aldo keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 373.0
YYD3_k127_3916432_2 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 320.0
YYD3_k127_3916432_3 Carboxymuconolactone decarboxylase family - - - 0.000000000001482 70.0
YYD3_k127_3916465_0 peroxidase - - - 2.064e-216 683.0
YYD3_k127_3916465_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00383 - 1.8.1.7 2.525e-194 616.0
YYD3_k127_3916465_10 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 284.0
YYD3_k127_3916465_11 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000006049 241.0
YYD3_k127_3916465_12 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000009285 236.0
YYD3_k127_3916465_13 Histidine kinase K02480 - 2.7.13.3 0.00000000000000000000000000000000000000000000000001863 192.0
YYD3_k127_3916465_14 Protein of unknown function, DUF393 - - - 0.00000000000000000000000000009257 120.0
YYD3_k127_3916465_15 Putative diguanylate phosphodiesterase - - - 0.000000000000000000005834 108.0
YYD3_k127_3916465_16 PFAM PBS lyase - - - 0.00000008886 58.0
YYD3_k127_3916465_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006493 544.0
YYD3_k127_3916465_3 Surface antigen K07277,K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 583.0
YYD3_k127_3916465_4 Transketolase, pyrimidine binding domain K00167 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009266 512.0
YYD3_k127_3916465_5 PQQ-like domain K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 507.0
YYD3_k127_3916465_6 nucleoside-diphosphate sugar epimerase K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001963 442.0
YYD3_k127_3916465_7 Putative MetA-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 372.0
YYD3_k127_3916465_8 Dehydrogenase E1 component K00161 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324 378.0
YYD3_k127_3916465_9 e3 binding domain K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 351.0
YYD3_k127_3917838_0 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 510.0
YYD3_k127_3917838_1 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002575 250.0
YYD3_k127_3917838_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000001439 238.0
YYD3_k127_3917838_3 - - - - 0.0000000000000000000000000000000000000001261 154.0
YYD3_k127_3917838_4 Methyltransferase K15256 - - 0.000001181 53.0
YYD3_k127_3928717_0 adenylate kinase K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 344.0
YYD3_k127_3928717_1 PFAM Acetyltransferase (GNAT) family K06976 - - 0.0000000000000000000000000000000000000000000000000000000000000000001405 239.0
YYD3_k127_3928717_2 Sh3 type 3 domain protein - - - 0.00000000000000000000274 106.0
YYD3_k127_3928717_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 0.000000000804 61.0
YYD3_k127_3931819_0 Cytochrome P450 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 351.0
YYD3_k127_3931819_1 Inner membrane protein involved in colicin E2 resistance K06143 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 293.0
YYD3_k127_3937454_0 Fg-gap repeat K18197 - 4.2.2.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009192 378.0
YYD3_k127_3937454_1 SMART PUA domain containing protein K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007756 344.0
YYD3_k127_3937454_2 PFAM glutamine amidotransferase class-I K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001732 278.0
YYD3_k127_3937454_3 Type IV pilus assembly protein PilM; K02662 - - 0.0000000000000000000000002474 119.0
YYD3_k127_3937454_4 Fg-gap repeat K18197 - 4.2.2.23 0.00000000000000000001335 91.0
YYD3_k127_3941633_0 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009529 600.0
YYD3_k127_3941633_1 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 556.0
YYD3_k127_3941633_10 ABC transporter K02049,K15578,K15579 - - 0.0000000000000000000000000000000000000000000000000003586 189.0
YYD3_k127_3941633_11 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000005216 144.0
YYD3_k127_3941633_2 Amidohydrolase K03392,K10220 - 4.1.1.45,4.2.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 545.0
YYD3_k127_3941633_3 dehydrogenases and related proteins K10219 - 1.1.1.312 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 471.0
YYD3_k127_3941633_4 Binding-protein-dependent transport system inner membrane component K15577 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 355.0
YYD3_k127_3941633_5 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 345.0
YYD3_k127_3941633_6 Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3- dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2- hydroxy-6-ketononatrienedioate, respectively K04099,K04101 - 1.13.11.57,1.13.11.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 334.0
YYD3_k127_3941633_7 ribonuclease inhibitor activity K10218 - 4.1.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 309.0
YYD3_k127_3941633_8 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000000000000000005428 237.0
YYD3_k127_3941633_9 Domain of unknown function (DUF1932) K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000682 219.0
YYD3_k127_3959542_0 Rubrerythrin K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000719 247.0
YYD3_k127_3959542_1 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000001152 206.0
YYD3_k127_3962440_0 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 473.0
YYD3_k127_3962440_1 TIGRFAM PQQ-dependent dehydrogenase, methanol ethanol family K00114 - 1.1.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 361.0
YYD3_k127_3963979_0 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004467 407.0
YYD3_k127_3963979_1 ArgK protein K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007222 318.0
YYD3_k127_3963979_2 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000001484 124.0
YYD3_k127_3963979_3 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0003277 47.0
YYD3_k127_3974073_0 COG NOG10142 non supervised orthologous group - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 477.0
YYD3_k127_3974073_1 SapC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 318.0
YYD3_k127_3974073_2 PFAM 2-nitropropane dioxygenase NPD - - - 0.000000000000000000000000000000000001696 140.0
YYD3_k127_3974073_3 RNA pseudouridylate synthase K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.0000000000000000000001604 103.0
YYD3_k127_3974073_4 PFAM Na-Ca exchanger integrin-beta4 peptidase-like FG-GAP K20276 - - 0.00000000000000004258 92.0
YYD3_k127_3974073_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000621 93.0
YYD3_k127_3974073_6 amine dehydrogenase activity K20276 - - 0.00000000000003016 79.0
YYD3_k127_3974073_7 Lytic polysaccharide mono-oxygenase, cellulose-degrading - - - 0.00000003307 55.0
YYD3_k127_3975882_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 9.936e-203 646.0
YYD3_k127_3975882_1 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000001806 74.0
YYD3_k127_3998136_0 Phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 378.0
YYD3_k127_3998136_1 glucose sorbosone K00117,K21430 GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016901,GO:0019842,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046872,GO:0048037,GO:0048038,GO:0055114,GO:0070968,GO:0097159,GO:1901363 1.1.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 334.0
YYD3_k127_3998136_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000006634 249.0
YYD3_k127_3998136_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000004512 212.0
YYD3_k127_3998136_4 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0000000000000000000000000000000000000006438 154.0
YYD3_k127_3998136_5 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000001775 132.0
YYD3_k127_3998136_6 Metallo-beta-lactamase superfamily - - - 0.000000000000000000001023 105.0
YYD3_k127_3998136_7 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000000008298 87.0
YYD3_k127_4005787_0 COG0666 FOG Ankyrin repeat K06867 - - 0.000000000000000000000000000000000000001803 162.0
YYD3_k127_4005787_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000004677 147.0
YYD3_k127_4005787_2 EamA-like transporter family K08978 - - 0.0000000000245 72.0
YYD3_k127_4005787_3 - - - - 0.00000002365 59.0
YYD3_k127_4025629_0 - - - - 7.185e-224 714.0
YYD3_k127_4025629_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 586.0
YYD3_k127_4025629_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 397.0
YYD3_k127_4025629_3 PFAM Integrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 345.0
YYD3_k127_4025629_4 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K01142,K10773 GO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033683,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.11.2,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003092 282.0
YYD3_k127_4025629_5 DNA topological change K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000002066 246.0
YYD3_k127_4025629_6 Aminomethyltransferase folate-binding domain K15066 - 2.1.1.341 0.0000000000000000000000000000000000000000000000000000002106 196.0
YYD3_k127_4025629_7 iron dependent repressor - - - 0.0000000000000000000000000000000000000000001118 166.0
YYD3_k127_4031640_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 522.0
YYD3_k127_4031640_1 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 397.0
YYD3_k127_4031640_2 COGs COG2912 conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000003134 244.0
YYD3_k127_4031640_3 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.000000000000000000000000000000000000000000000000000000000004396 218.0
YYD3_k127_4031640_4 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000002962 96.0
YYD3_k127_4031640_5 - - - - 0.00001083 51.0
YYD3_k127_4042989_0 WD40 repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005331 322.0
YYD3_k127_4042989_1 Leucine rich repeat - - - 0.000000000001888 73.0
YYD3_k127_4070748_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 566.0
YYD3_k127_4070748_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007048 272.0
YYD3_k127_4070748_2 EamA-like transporter family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000001576 232.0
YYD3_k127_4070748_3 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000000000000000000000000000000000009101 216.0
YYD3_k127_4070748_4 TonB dependent receptor - - - 0.000000000000000000000000000008797 130.0
YYD3_k127_4081723_0 Pyrrolo-quinoline quinone K00114 - 1.1.2.8 5.834e-275 858.0
YYD3_k127_4081723_1 Uncharacterized protein conserved in bacteria (DUF2252) - - - 1.17e-218 687.0
YYD3_k127_4081723_10 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275,K17223 GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.9.3.1 0.00000000000000000000001918 110.0
YYD3_k127_4081723_11 - - - - 0.00000000000000000000002277 104.0
YYD3_k127_4081723_12 Protein of unknown function (DUF3313) - - - 0.0000000000000000000007524 106.0
YYD3_k127_4081723_13 BON domain - - - 0.000000000000000000001984 105.0
YYD3_k127_4081723_2 Cytochrome C and Quinol oxidase polypeptide I K15408 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 548.0
YYD3_k127_4081723_3 Protein involved in meta-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 308.0
YYD3_k127_4081723_4 PFAM extracellular solute-binding protein, family 3 K16254 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005522 293.0
YYD3_k127_4081723_5 Protein of unknown function, DUF481 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 297.0
YYD3_k127_4081723_6 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003383 250.0
YYD3_k127_4081723_7 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) K02351 - - 0.000000000000000000000000000000000000000000000000004222 190.0
YYD3_k127_4081723_8 Cytochrome C oxidase, cbb3-type, subunit III K00406 - - 0.0000000000000000000000000000001883 134.0
YYD3_k127_4081723_9 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000008476 105.0
YYD3_k127_4088099_0 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 339.0
YYD3_k127_4088099_1 PFAM peptidase M61 domain protein - - - 0.0000000000000000000000000000000000000000000008055 173.0
YYD3_k127_4088099_2 Cys-tRNA(Pro) hydrolase activity K03976,K19055 - - 0.00000000000000000000000000000000000003761 150.0
YYD3_k127_4088099_3 sequence-specific DNA binding - - - 0.0000000000005159 70.0
YYD3_k127_4111712_0 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 422.0
YYD3_k127_4111712_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.4 0.000000000000000000000000000000000000000000000000000002444 195.0
YYD3_k127_4111712_2 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000003564 154.0
YYD3_k127_4111712_3 EcsC protein family - - - 0.0000003671 62.0
YYD3_k127_4114336_0 aminopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003482 542.0
YYD3_k127_4114336_1 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 462.0
YYD3_k127_4114336_10 - - - - 0.00000000000000000000000001909 118.0
YYD3_k127_4114336_11 Sigma-70 region 2 K03088 - - 0.000000000000000000000000084 114.0
YYD3_k127_4114336_12 - - - - 0.0000000000000000526 89.0
YYD3_k127_4114336_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009187 312.0
YYD3_k127_4114336_3 HupE / UreJ protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003705 274.0
YYD3_k127_4114336_4 peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001467 272.0
YYD3_k127_4114336_5 Thioredoxin-like [2Fe-2S] ferredoxin K00127 - - 0.0000000000000000000000000000000000000000000000000000000002437 208.0
YYD3_k127_4114336_6 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000000000000000000000000000000000000000002701 187.0
YYD3_k127_4114336_7 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124 - - 0.00000000000000000000000000000000000000000000002987 178.0
YYD3_k127_4114336_8 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000000000000000000001204 141.0
YYD3_k127_4114336_9 - - - - 0.0000000000000000000000000001167 128.0
YYD3_k127_4124886_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1316.0
YYD3_k127_4124886_1 PFAM multicopper oxidase type K08100,K14588 - 1.3.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 471.0
YYD3_k127_4124886_11 alpha/beta hydrolase fold - - - 0.0003 49.0
YYD3_k127_4124886_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001592 268.0
YYD3_k127_4124886_3 N-acetylglucosaminylinositol deacetylase activity K01463 - - 0.00000000000000000000000000000000000000000000000000000000000000000002177 239.0
YYD3_k127_4124886_4 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000001443 207.0
YYD3_k127_4124886_5 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000000000000000000007785 183.0
YYD3_k127_4124886_6 Protein of unknown function (DUF2892) - - - 0.0000000000000000003042 96.0
YYD3_k127_4124886_7 membrane K00389 - - 0.000000000000000009795 89.0
YYD3_k127_4124886_8 Photosynthetic reaction centre cytochrome C subunit - - - 0.0000000000000001148 88.0
YYD3_k127_4142047_0 ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 372.0
YYD3_k127_4142047_1 Glutamine synthetase, catalytic domain - - - 0.000000000000004675 75.0
YYD3_k127_4168808_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1103.0
YYD3_k127_4168808_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 311.0
YYD3_k127_4168808_2 HELICc2 K03722 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003324 275.0
YYD3_k127_4168808_3 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 4.3.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000005264 243.0
YYD3_k127_4168808_4 Tetratricopeptide repeat - - - 0.000000000000000000000001151 118.0
YYD3_k127_4168808_5 protein N-acetylglucosaminyltransferase activity K09580,K09667 - 2.4.1.255,5.3.4.1 0.00000001143 63.0
YYD3_k127_4173986_0 selenocysteine insertion sequence binding K03833 GO:0000049,GO:0000166,GO:0001514,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009069,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016259,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031326,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034641,GO:0034645,GO:0035368,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009126 443.0
YYD3_k127_4173986_1 Formate dehydrogenase N, transmembrane K00124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 364.0
YYD3_k127_4173986_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 330.0
YYD3_k127_4173986_3 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001041 293.0
YYD3_k127_4173986_4 formate dehydrogenase K00127,K08350 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006091,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009326,GO:0009987,GO:0015942,GO:0015944,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0020037,GO:0022900,GO:0031224,GO:0031226,GO:0032787,GO:0032991,GO:0033554,GO:0036397,GO:0043436,GO:0044237,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0050896,GO:0051716,GO:0052738,GO:0055114,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.000000000000000000000000000000000000000000000001585 183.0
YYD3_k127_4173986_5 protein involved in formate dehydrogenase formation K02380 - - 0.0000000000000000000000000000002735 138.0
YYD3_k127_4182882_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 8.584e-265 832.0
YYD3_k127_4182882_1 succinyl-diaminopimelate desuccinylase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 392.0
YYD3_k127_4182882_2 PFAM aminotransferase class V - GO:0001505,GO:0003674,GO:0003824,GO:0004760,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006807,GO:0008150,GO:0008152,GO:0008453,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0019265,GO:0019752,GO:0042133,GO:0042136,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002659 274.0
YYD3_k127_4182882_3 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002257 258.0
YYD3_k127_4182882_4 Protein of unknown function (DUF1161) - - - 0.000000000000002728 78.0
YYD3_k127_4182882_5 PFAM GCN5-related N-acetyltransferase - - - 0.00006916 51.0
YYD3_k127_4194874_0 PEP-CTERM motif - - - 0.000005475 57.0
YYD3_k127_4228679_0 Carboxypeptidase regulatory-like domain - - - 2.068e-318 1005.0
YYD3_k127_4228679_1 PBP superfamily domain - - - 0.000000000000000000000000000000000004162 141.0
YYD3_k127_4235506_0 Elements of external origin K07494 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 385.0
YYD3_k127_4243020_0 TIGRFAM carbamoyl-phosphate synthase, large subunit K01955 - 6.3.5.5 0.0 1422.0
YYD3_k127_4257270_0 - - - - 0.000000000000000000000000000000000000000000000000000002547 198.0
YYD3_k127_4257270_1 - - - - 0.00000000000000000000000000000000000171 149.0
YYD3_k127_4257270_2 Alpha/beta hydrolase family K06889 - - 0.00000000000000000000000000000002413 138.0
YYD3_k127_4257270_3 - - - - 0.00000000000000000000000000000554 125.0
YYD3_k127_4257270_4 exported protein of Yersinia - - - 0.000000001699 68.0
YYD3_k127_4300268_0 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000002852 169.0
YYD3_k127_4300268_1 PFAM DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000006983 134.0
YYD3_k127_4300268_2 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000005739 123.0
YYD3_k127_4300268_3 Cytochrome P460 - - - 0.000000000000004669 87.0
YYD3_k127_4300268_4 Vitamin k epoxide reductase - - - 0.00000000001742 70.0
YYD3_k127_4311955_0 amidase activity K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 496.0
YYD3_k127_4311955_1 response regulator K01768,K02584,K07183,K22010 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003804 309.0
YYD3_k127_4311955_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000003496 129.0
YYD3_k127_4331542_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.281e-307 960.0
YYD3_k127_4331542_1 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000000000001239 224.0
YYD3_k127_4331542_2 RNA polymerase sigma factor K03088 - - 0.00000000000000000000000000000000000000000000005554 175.0
YYD3_k127_4331542_3 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000005757 125.0
YYD3_k127_4331542_4 Hsp20/alpha crystallin family K13993 - - 0.000000000008457 69.0
YYD3_k127_4331542_5 Putative zinc-finger - - - 0.0007658 47.0
YYD3_k127_4334237_0 FAD linked oxidases, C-terminal domain K00803 - 2.5.1.26 4.617e-215 683.0
YYD3_k127_4334237_1 Aldehyde dehydrogenase family K00141,K21802 - 1.2.1.28,1.2.1.67 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 587.0
YYD3_k127_4334237_10 Periplasmic or secreted lipoprotein - - - 0.000000000000000000000000000002766 132.0
YYD3_k127_4334237_11 Dipeptidyl peptidase IV (DPP IV) N-terminal region - - - 0.000000000000000000000000000846 117.0
YYD3_k127_4334237_12 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000001088 105.0
YYD3_k127_4334237_13 Serine aminopeptidase, S33 K03928 - 3.1.1.1 0.00000000000000000002478 106.0
YYD3_k127_4334237_14 COG3209 Rhs family protein - - - 0.000005573 59.0
YYD3_k127_4334237_2 Male sterility protein K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005231 364.0
YYD3_k127_4334237_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001127 263.0
YYD3_k127_4334237_4 PFAM Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000001722 245.0
YYD3_k127_4334237_5 Esterase-like activity of phytase - - - 0.0000000000000000000000000000000000000000000000000000000000000007616 226.0
YYD3_k127_4334237_6 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000006166 202.0
YYD3_k127_4334237_7 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.00000000000000000000000000000000000000000000000000004409 196.0
YYD3_k127_4334237_8 - - - - 0.000000000000000000000000000000000000000006862 160.0
YYD3_k127_4334237_9 Two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.000000000000000000000000000000000000662 143.0
YYD3_k127_4335853_0 Domain of unknown function (DUF5118) - - - 9.702e-227 734.0
YYD3_k127_4335853_1 Aldehyde dehydrogenase family K00294,K13821 - 1.2.1.88,1.5.5.2 8.788e-218 688.0
YYD3_k127_4335853_10 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 331.0
YYD3_k127_4335853_11 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001732 319.0
YYD3_k127_4335853_12 Bacterial periplasmic substrate-binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003651 280.0
YYD3_k127_4335853_13 - - - - 0.00000000000000000000000000000000000000000000000007393 185.0
YYD3_k127_4335853_14 - - - - 0.000000000000000000000000000000000000000000000008401 177.0
YYD3_k127_4335853_16 PspA/IM30 family K03969 - - 0.00000000000000000002003 100.0
YYD3_k127_4335853_17 - - - - 0.00000000000004039 83.0
YYD3_k127_4335853_18 - - - - 0.00000000005625 75.0
YYD3_k127_4335853_2 Molecular chaperone. Has ATPase activity K04079 GO:0000302,GO:0000303,GO:0000305,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0010035,GO:0016020,GO:0030312,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071450,GO:0071451,GO:0071944,GO:1901700,GO:1901701 - 2.216e-196 630.0
YYD3_k127_4335853_3 ATPase family associated with various cellular activities (AAA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 534.0
YYD3_k127_4335853_4 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00956 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002783 475.0
YYD3_k127_4335853_5 TIGRFAM sulfate adenylyltransferase, small subunit K00957 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006768 465.0
YYD3_k127_4335853_6 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 464.0
YYD3_k127_4335853_7 peroxiredoxin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 415.0
YYD3_k127_4335853_9 major facilitator superfamily MFS_1 K08225 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000962 342.0
YYD3_k127_4353173_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 3.112e-231 730.0
YYD3_k127_4353173_1 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 500.0
YYD3_k127_4353173_2 Pantothenic acid kinase K00867 GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009835 409.0
YYD3_k127_4353173_3 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.000000000000000000000000000003392 122.0
YYD3_k127_4353173_4 Protein of unknown function (DUF4026) - - - 0.00000000003432 75.0
YYD3_k127_4353173_5 PFAM Pentapeptide repeats (8 copies) - - - 0.0000000009183 65.0
YYD3_k127_4353173_6 DNA repair exonuclease K03547 - - 0.000000001211 60.0
YYD3_k127_4353173_7 Carboxypeptidase regulatory-like domain - - - 0.0000271 55.0
YYD3_k127_4365625_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 354.0
YYD3_k127_4365625_1 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000000000000000000002509 181.0
YYD3_k127_4365625_2 efflux transmembrane transporter activity - - - 0.000000000000000000000003594 108.0
YYD3_k127_4397897_0 TLC ATP/ADP transporter K03301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002884 283.0
YYD3_k127_4397897_1 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000008176 266.0
YYD3_k127_4397897_2 Periplasmic or secreted lipoprotein - - - 0.00000000000000000000000000000005738 134.0
YYD3_k127_4398387_0 Flotillin K07192 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003301 406.0
YYD3_k127_4398387_1 Di-haem oxidoreductase, putative peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 326.0
YYD3_k127_4398387_2 Sulfatase K01130 - 3.1.6.1 0.0000000000000000000000000000000000000000000000000002382 186.0
YYD3_k127_4398387_3 - - - - 0.000000000005629 73.0
YYD3_k127_4398387_4 DNA ligase D, 3'-phosphoesterase domain - - - 0.000000001476 61.0
YYD3_k127_4419943_0 PFAM Peptidase M16 K07263 - - 2.866e-306 965.0
YYD3_k127_4419943_1 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000001496 211.0
YYD3_k127_4431731_0 AMP-dependent synthetase and ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009028 538.0
YYD3_k127_4431731_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 349.0
YYD3_k127_4431731_10 COG1388 FOG LysM repeat - - - 0.00002717 56.0
YYD3_k127_4431731_11 - - - - 0.00006113 49.0
YYD3_k127_4431731_2 Major Facilitator Superfamily K08177 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 339.0
YYD3_k127_4431731_3 2-dehydropantoate 2-reductase K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 325.0
YYD3_k127_4431731_4 PFAM Transglycosylase SLT domain K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000001477 241.0
YYD3_k127_4431731_5 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000009616 159.0
YYD3_k127_4431731_6 N-Acetylmuramoyl-L-alanine amidase K01447,K03806,K11066 - 3.5.1.28 0.00000000000000000000000000000000000005287 151.0
YYD3_k127_4431731_7 Methyltransferase type 11 - - - 0.0000000000000001338 89.0
YYD3_k127_4431731_8 Two component regulator propeller K00936 - 2.7.13.3 0.0000000000628 68.0
YYD3_k127_4431731_9 - - - - 0.000003657 55.0
YYD3_k127_4435491_0 Radical SAM superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003783 263.0
YYD3_k127_4435491_1 transferase activity, transferring glycosyl groups K00720 - 2.4.1.80 0.00000000000000000000000000000000000000000000314 179.0
YYD3_k127_4435491_2 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000000002647 166.0
YYD3_k127_4443253_0 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 433.0
YYD3_k127_4443253_1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00015 - 1.1.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008028 342.0
YYD3_k127_4443253_2 LD-carboxypeptidase K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004022 277.0
YYD3_k127_4443253_3 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000002264 248.0
YYD3_k127_4443253_4 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000002083 162.0
YYD3_k127_4449621_0 PrkA AAA domain K07180 - - 0.0 1038.0
YYD3_k127_4449621_1 PFAM SpoVR like protein K06415 - - 7.721e-213 673.0
YYD3_k127_4449621_2 Belongs to the UPF0229 family K09786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 490.0
YYD3_k127_4449621_3 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 417.0
YYD3_k127_4449621_4 HELICc2 K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003368 302.0
YYD3_k127_4449621_5 B3 4 domain protein - - - 0.0000000000000000000000000000000001297 140.0
YYD3_k127_4449621_6 proteolysis - - - 0.00000000000000000000000004831 112.0
YYD3_k127_4449621_7 TIGRFAM MoaD family protein K03636 - - 0.000000000000000000000003115 104.0
YYD3_k127_4449621_8 regulatory protein, MerR - - - 0.0000000008987 62.0
YYD3_k127_4465888_0 COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 323.0
YYD3_k127_4465888_1 ABC-type transport system involved in multi-copper enzyme maturation permease component - - - 0.000000000000000000004968 106.0
YYD3_k127_4480644_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 406.0
YYD3_k127_4480644_1 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007583 360.0
YYD3_k127_4480644_2 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000001737 121.0
YYD3_k127_4480644_3 - - - - 0.0000000000000000000000000005199 123.0
YYD3_k127_4480644_4 Protein conserved in bacteria - - - 0.000000000000000000000000005187 121.0
YYD3_k127_4480644_5 Ribosomal L32p protein family K02911 - - 0.0000000000000000000002438 97.0
YYD3_k127_4480644_6 Belongs to the ompA family K03286 - - 0.000000000000000006294 94.0
YYD3_k127_4480644_8 Tetratricopeptide repeat - - - 0.0002792 51.0
YYD3_k127_4487678_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 468.0
YYD3_k127_4487678_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 363.0
YYD3_k127_4487678_2 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 351.0
YYD3_k127_4487678_3 FtsZ-dependent cytokinesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 325.0
YYD3_k127_4487678_4 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000592 175.0
YYD3_k127_4487678_5 Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA - - - 0.0000000000000002371 89.0
YYD3_k127_4487678_6 lipolytic protein G-D-S-L family - - - 0.0000003902 61.0
YYD3_k127_4487678_7 Amidohydrolase family - - - 0.0008316 44.0
YYD3_k127_4493456_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 4.135e-260 814.0
YYD3_k127_4493456_1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 467.0
YYD3_k127_4493456_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005868 325.0
YYD3_k127_4502218_0 Transketolase, thiamine diphosphate binding domain - - - 5.525e-314 976.0
YYD3_k127_4502218_1 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 2.246e-234 736.0
YYD3_k127_4502218_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001535 246.0
YYD3_k127_4502218_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000116 206.0
YYD3_k127_4502218_4 Ectoine synthase - - - 0.0000000000000000000000000000000000000000000000000000007193 194.0
YYD3_k127_4502218_7 - - - - 0.00004395 54.0
YYD3_k127_4518948_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 458.0
YYD3_k127_4518948_1 Urea ABC transporter ATP-binding protein K11963 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001929 243.0
YYD3_k127_4518948_2 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.00000000000000000000000000000000000000004112 153.0
YYD3_k127_4518948_3 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.0000000000000000000000000000000000000004381 153.0
YYD3_k127_454747_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0 1030.0
YYD3_k127_454747_1 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000005626 272.0
YYD3_k127_454747_2 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000000000000000000000000078 239.0
YYD3_k127_454747_3 cheY-homologous receiver domain - - - 0.000000000000000000000000003406 121.0
YYD3_k127_455935_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 565.0
YYD3_k127_455935_1 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 358.0
YYD3_k127_4561342_0 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.0000000000000000000000000000000000000000000000000000000000000000006899 239.0
YYD3_k127_4561342_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000000000000000004277 218.0
YYD3_k127_4561342_2 Conserved hypothetical protein (DUF2461) - - - 0.00000000000000000000000000000000000000000000000000000007201 204.0
YYD3_k127_4561342_3 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000004001 188.0
YYD3_k127_4561342_4 Phosphofructokinase - - - 0.000000000000000000000000000007594 119.0
YYD3_k127_4561342_5 epimerase dehydratase K01784 - 5.1.3.2 0.000000389 53.0
YYD3_k127_4574187_0 peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 393.0
YYD3_k127_4574187_1 peptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 371.0
YYD3_k127_4574187_2 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000001671 231.0
YYD3_k127_4574187_3 DNA topological change K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000001579 195.0
YYD3_k127_4578613_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 400.0
YYD3_k127_4578613_1 mechanosensitive ion channel K22044 - - 0.0000000000000000000000000000000000000000000000000005105 194.0
YYD3_k127_4580220_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004651 495.0
YYD3_k127_4580220_1 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 439.0
YYD3_k127_4580220_2 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000000000005003 201.0
YYD3_k127_4611792_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0000271,GO:0003674,GO:0003824,GO:0004373,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 414.0
YYD3_k127_4611792_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000001339 192.0
YYD3_k127_4611792_2 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000005285 63.0
YYD3_k127_4620512_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002903 268.0
YYD3_k127_4620512_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000149 100.0
YYD3_k127_462407_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 1.145e-286 905.0
YYD3_k127_462407_1 PQQ-like domain K05889 - 1.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 439.0
YYD3_k127_462407_2 COG3209 Rhs family protein K11021 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 366.0
YYD3_k127_462407_3 Histone methylation protein DOT1 - - - 0.00000000000000000000000000000000000000000000000000000007236 200.0
YYD3_k127_462407_4 von Willebrand factor, type A - - - 0.0000000000000000000000000000000000000000000000000006148 197.0
YYD3_k127_462407_5 PFAM SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000006677 183.0
YYD3_k127_462407_6 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000004744 153.0
YYD3_k127_462407_7 self proteolysis - - - 0.00000000000000000000005313 117.0
YYD3_k127_4656541_0 PBS lyase HEAT-like repeat - - - 3.353e-196 634.0
YYD3_k127_4656541_1 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 474.0
YYD3_k127_4656541_2 Methyltransferase, chemotaxis proteins K00575,K13486 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000537 302.0
YYD3_k127_4656541_3 CheC inhibitor of MCP methylation K03410 - - 0.0000000000000000000000000000000000000000000000000000000000000006173 226.0
YYD3_k127_4656541_4 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000000000002752 229.0
YYD3_k127_4656541_5 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000002777 136.0
YYD3_k127_4657009_0 Glucose / Sorbosone dehydrogenase - - - 3.469e-228 710.0
YYD3_k127_4657009_1 SMP-30/Gluconolaconase/LRE-like region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004905 514.0
YYD3_k127_4657009_2 2OG-Fe(II) oxygenase K07336 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002259 274.0
YYD3_k127_4657009_3 Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex - - - 0.000000000000000000000000000000000000000000000000000000000111 208.0
YYD3_k127_4657009_4 BFD-like [2Fe-2S] binding domain K02192 - - 0.000002392 52.0
YYD3_k127_4658737_0 membrane organization - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 510.0
YYD3_k127_4658737_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 380.0
YYD3_k127_4658737_10 Retroviral aspartyl protease - - - 0.000000000000007454 87.0
YYD3_k127_4658737_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006634 337.0
YYD3_k127_4658737_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001944 283.0
YYD3_k127_4658737_4 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K07106 - 4.2.1.126 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002251 274.0
YYD3_k127_4658737_5 COG0685 5,10-methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000001589 264.0
YYD3_k127_4658737_6 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000000000000000006466 235.0
YYD3_k127_4658737_7 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000000711 171.0
YYD3_k127_4658737_8 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000518 156.0
YYD3_k127_4658737_9 Bacterial protein of unknown function (DUF839) K07093 - - 0.000000000000000000000000000000001754 135.0
YYD3_k127_4659623_0 FGGY family of carbohydrate kinases, N-terminal domain K00854 - 2.7.1.17 2.352e-217 683.0
YYD3_k127_4659623_1 Belongs to the xylose isomerase family K01805 - 5.3.1.5 1.608e-197 622.0
YYD3_k127_4659623_2 tRNA (guanine-N7-)-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009486 441.0
YYD3_k127_4659623_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002958 355.0
YYD3_k127_4659623_4 2-dehydro-3-deoxyphosphogluconate aldolase 4-hydroxy-2-oxoglutarate aldolase K01625 - 4.1.2.14,4.1.3.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001631 273.0
YYD3_k127_4659623_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000002234 225.0
YYD3_k127_4659623_6 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000001382 211.0
YYD3_k127_4659623_7 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.00000000000000000000000000000000000000000000000000000002363 207.0
YYD3_k127_4659623_8 Belongs to the ClpA ClpB family K03696 - - 0.0000000000000000000000000000000009642 138.0
YYD3_k127_4659623_9 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000001555 141.0
YYD3_k127_4665359_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 493.0
YYD3_k127_4665359_1 Carboxypeptidase regulatory-like domain - - - 0.0000000006081 67.0
YYD3_k127_4666934_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 490.0
YYD3_k127_4666934_1 Protein of unknown function (DUF1385) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 300.0
YYD3_k127_4666934_2 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005005 257.0
YYD3_k127_4666934_3 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000003633 234.0
YYD3_k127_4666934_4 PFAM PDZ domain (Also known as DHR or GLGF) - - - 0.000000000000000000000000000000000000000000000000000000000000002666 228.0
YYD3_k127_4666934_5 Bacterial regulatory proteins, luxR family - - - 0.00000000000000000000000000001572 126.0
YYD3_k127_4666934_6 Peptidase family M1 domain - - - 0.0000000000000000000000001593 122.0
YYD3_k127_4670899_0 B12 binding domain - - - 1.097e-206 655.0
YYD3_k127_4670899_1 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008374 612.0
YYD3_k127_4670899_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009436 568.0
YYD3_k127_4670899_3 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 464.0
YYD3_k127_4670899_4 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000008016 226.0
YYD3_k127_4670899_5 Amidohydrolase family - - - 0.00000000000000000000000000000000002631 147.0
YYD3_k127_4701174_0 DNA topological change K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008875 368.0
YYD3_k127_4701174_1 protein-glutamate O-methyltransferase activity K00575,K03408,K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000003086 259.0
YYD3_k127_4701174_2 - - - - 0.00001474 53.0
YYD3_k127_4706972_0 ASPIC and UnbV - - - 9.752e-270 839.0
YYD3_k127_4706972_1 domain protein - - - 1.26e-196 632.0
YYD3_k127_4706972_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008254 473.0
YYD3_k127_4706972_3 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003979 269.0
YYD3_k127_4706972_4 hydroperoxide reductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000001282 220.0
YYD3_k127_4706972_5 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000000000000000000000000000000000002957 146.0
YYD3_k127_4706972_6 peptidyl-tyrosine sulfation - - - 0.000000000000000000000003974 106.0
YYD3_k127_4706972_7 - - - - 0.000000000000001316 78.0
YYD3_k127_4707628_0 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 2.344e-231 725.0
YYD3_k127_4707628_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372 - - 1.916e-207 652.0
YYD3_k127_4707628_10 nitrite reductase [NAD(P)H] activity K00363,K05710 - 1.7.1.15 0.000000000000000000000000005548 113.0
YYD3_k127_4707628_11 Belongs to the GSP D family K02453 - - 0.000000000001372 81.0
YYD3_k127_4707628_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003791 598.0
YYD3_k127_4707628_3 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004511 541.0
YYD3_k127_4707628_4 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 453.0
YYD3_k127_4707628_5 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005987 419.0
YYD3_k127_4707628_6 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 385.0
YYD3_k127_4707628_7 nitrite transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007177 380.0
YYD3_k127_4707628_8 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 362.0
YYD3_k127_4707628_9 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000006643 243.0
YYD3_k127_4722425_0 signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001601 246.0
YYD3_k127_4722425_1 belongs to the thioredoxin family K05838 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000001151 163.0
YYD3_k127_4724487_0 associated with various cellular activities K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002232 327.0
YYD3_k127_4724487_1 Protein of unknown function DUF58 - - - 0.0000000000000000000005826 105.0
YYD3_k127_4724487_2 - - - - 0.00000000006219 74.0
YYD3_k127_4743965_0 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 325.0
YYD3_k127_4743965_1 Protein of unknown function (DUF1595) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 299.0
YYD3_k127_4743965_2 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002642 265.0
YYD3_k127_4748779_0 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000000000000000000000000000000000000000000000000002298 209.0
YYD3_k127_4748779_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000002942 213.0
YYD3_k127_4748779_2 O-antigen ligase like membrane protein - - - 0.00000000000000000000000000000000000002735 158.0
YYD3_k127_4748779_4 Cupin 2, conserved barrel domain protein - - - 0.00000000000000919 79.0
YYD3_k127_4748779_5 Protein of unknown function (DUF1501) - - - 0.000002617 53.0
YYD3_k127_4748779_6 Involved in the tonB-independent uptake of proteins K03641 - - 0.00002531 54.0
YYD3_k127_4750647_0 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 586.0
YYD3_k127_4750647_1 phosphorelay sensor kinase activity K07709,K07710 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 490.0
YYD3_k127_4750647_2 Glycosyl hydrolase family 57 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 450.0
YYD3_k127_4750647_3 PFAM Phosphomethylpyrimidine kinase type-1 K00868,K00941,K14153 - 2.5.1.3,2.7.1.35,2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001498 276.0
YYD3_k127_4750647_4 SMART PDZ DHR GLGF domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002848 286.0
YYD3_k127_4750647_5 GDP-mannose mannosyl hydrolase activity - - - 0.000000000000000000000000003443 115.0
YYD3_k127_4753804_0 COGs COG1629 Outer membrane receptor protein mostly Fe transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 474.0
YYD3_k127_4769857_0 ATP-dependent helicase C-terminal K03579 - 3.6.4.13 5.353e-302 947.0
YYD3_k127_4769857_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007853 413.0
YYD3_k127_4769857_2 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006641 376.0
YYD3_k127_4769857_3 Putative esterase K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 375.0
YYD3_k127_4769857_4 Pseudouridine synthase K06177 - 5.4.99.28,5.4.99.29 0.000000000000000000000000000000000000000000000000000000000000000000000001502 254.0
YYD3_k127_4769857_5 - - - - 0.000000000000000000000000000000000000000000000000000001208 204.0
YYD3_k127_4769857_6 PFAM Ribonuclease BN-like family K07058 - - 0.000000000000000000000000000000000000000011 164.0
YYD3_k127_4769857_7 ABC-2 type transporter - - - 0.00000000000000000000000003273 113.0
YYD3_k127_4775196_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 414.0
YYD3_k127_4775196_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 368.0
YYD3_k127_4775196_2 CDP-alcohol phosphatidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000207 245.0
YYD3_k127_4775196_3 5'-deoxynucleotidase activity K07023 - - 0.000000000000000000000000000000000000000000000000000000000000000000008211 239.0
YYD3_k127_4775196_4 - - - - 0.00000000000000000000000000002173 126.0
YYD3_k127_4775196_5 Putative adhesin - - - 0.00000000000000000000000000009807 131.0
YYD3_k127_4775196_6 PFAM RNP-1 like RNA-binding protein - - - 0.0000000000000000000000002728 108.0
YYD3_k127_4775196_7 - - - - 0.000000000000009259 81.0
YYD3_k127_4811141_0 DNA topological change K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 430.0
YYD3_k127_4811141_1 COG0500 SAM-dependent methyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 300.0
YYD3_k127_4811141_2 translation initiation inhibitor, yjgF family - - - 0.0000000000000000000000000000000000000000005867 161.0
YYD3_k127_4811141_3 protein ubiquitination K15503,K21440 - - 0.0000000000000000000000000000000000001427 163.0
YYD3_k127_4818664_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 460.0
YYD3_k127_4818664_1 PFAM Patatin-like phospholipase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005888 419.0
YYD3_k127_4818664_2 ABC transporter K01990,K09697 - 3.6.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000001013 259.0
YYD3_k127_4818664_3 PFAM LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000007854 213.0
YYD3_k127_4818664_4 ABC-2 family transporter protein K01992,K07052,K09696 - - 0.00000000000000000000000000000000000000000008345 182.0
YYD3_k127_4818664_5 Transcriptional coactivator pterin dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000000000000001472 154.0
YYD3_k127_4818664_6 ABC-2 family transporter protein K09696 - - 0.00000000000000000000000000000000000002785 160.0
YYD3_k127_4818664_7 DNA-templated transcription, initiation - - - 0.00000000000000000000000002018 115.0
YYD3_k127_4834749_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000002137 231.0
YYD3_k127_4834749_1 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000002751 202.0
YYD3_k127_4834749_2 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000007985 127.0
YYD3_k127_4862726_0 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006281 531.0
YYD3_k127_4862726_1 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007772 336.0
YYD3_k127_4862726_2 Two component signalling adaptor domain K03408 - - 0.0000000000000000000000000000000000000000000000003227 181.0
YYD3_k127_4862726_3 cheY-homologous receiver domain K03413 - - 0.00000000000000000000000000000000000000006413 154.0
YYD3_k127_4862726_4 PFAM KWG Leptospira - - - 0.000000000000000004608 87.0
YYD3_k127_4862726_5 protein ubiquitination K21440 - - 0.0000000000000001344 89.0
YYD3_k127_4862726_6 WG containing repeat - - - 0.000000003145 63.0
YYD3_k127_4866393_0 DNA topological change K03168 - 5.99.1.2 5.632e-207 671.0
YYD3_k127_4866393_1 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006317 362.0
YYD3_k127_4866393_2 response to abiotic stimulus K06867 - - 0.0000000000000000000000000000000000000000000000000000000000000001873 241.0
YYD3_k127_4887808_0 Epoxide hydrolase N terminus K01253,K21159 - 3.3.2.9 1.636e-232 729.0
YYD3_k127_4887808_1 Epoxide hydrolase N terminus K01253,K21159 - 3.3.2.9 1.922e-208 656.0
YYD3_k127_4887808_2 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003169 474.0
YYD3_k127_4887808_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000002377 229.0
YYD3_k127_4887808_4 Thioredoxin-like - - - 0.00000003681 56.0
YYD3_k127_4902217_0 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 312.0
YYD3_k127_4902217_1 PFAM von Willebrand factor type A - - - 0.0000000000000000000000000000000000000000000000000000000000000000002384 240.0
YYD3_k127_4902217_2 PFAM von Willebrand factor type A - - - 0.0000000000000000000000000000000000000000000000000000000000009775 220.0
YYD3_k127_4902217_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.00000000000000000000000000000000000000000000000000000001944 202.0
YYD3_k127_4908768_0 DNA topological change K03168 - 5.99.1.2 7.986e-230 731.0
YYD3_k127_4908768_1 Protein of unknown function (DUF1552) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 391.0
YYD3_k127_4908768_2 response to abiotic stimulus K06867 - - 0.00000000000000000000000000000000000000000000000000000000000000002369 245.0
YYD3_k127_4908768_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000002162 161.0
YYD3_k127_4908768_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000006059 105.0
YYD3_k127_4927410_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1359.0
YYD3_k127_4927410_1 Protein involved in outer membrane biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 610.0
YYD3_k127_4927410_2 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 577.0
YYD3_k127_4927410_3 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 421.0
YYD3_k127_4927410_4 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000000187 191.0
YYD3_k127_4927410_5 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.00000000000000000000000000000000000000000000000006467 190.0
YYD3_k127_4927410_6 Domain of unknown function (DUF3291) - - - 0.00000000000000000000000000000554 125.0
YYD3_k127_4927410_7 - - - - 0.0000000000000000004135 93.0
YYD3_k127_493660_0 Bacterial protein of unknown function (DUF839) K07093 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002585 267.0
YYD3_k127_493660_1 domain protein K14194 - - 0.000000000000000000000000000000000000000000000000000000000000006794 238.0
YYD3_k127_493660_2 COG0491 Zn-dependent hydrolases, including glyoxylases K13075 - 3.1.1.81 0.00000000000000000000000000000000000000000000000000000006018 205.0
YYD3_k127_493660_3 PFAM Prenyltransferase squalene oxidase - - - 0.0000000000000000000000000000000000000000001246 172.0
YYD3_k127_493660_4 - - - - 0.000000000000000000000000000001715 125.0
YYD3_k127_493660_5 - - - - 0.00000000000000000000000000004134 128.0
YYD3_k127_493660_6 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000523 87.0
YYD3_k127_493660_7 - - - - 0.0000000001514 63.0
YYD3_k127_4942726_0 PQQ-like domain K00117 - 1.1.5.2 0.00000000000000000000000000003313 121.0
YYD3_k127_4942726_1 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000007672 111.0
YYD3_k127_4942726_2 - - - - 0.0000000000006429 78.0
YYD3_k127_4954968_0 COG1012 NAD-dependent aldehyde - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006313 312.0
YYD3_k127_4954968_1 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000006131 195.0
YYD3_k127_4954968_2 COG1012 NAD-dependent aldehyde - - - 0.000000000000000000000000000103 116.0
YYD3_k127_4956916_0 AAA ATPase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004047 516.0
YYD3_k127_4956916_1 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009026 248.0
YYD3_k127_4959999_0 MraW methylase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 435.0
YYD3_k127_4959999_1 MazG-like family - - - 0.000000000000000000000000000000000000006865 149.0
YYD3_k127_4959999_2 - - - - 0.000000000000000000000000003726 113.0
YYD3_k127_4959999_3 Starch-binding associating with outer membrane K21572 - - 0.000000000000000000001791 107.0
YYD3_k127_49774_0 DNA-directed DNA polymerase K02337 - 2.7.7.7 0.0 1247.0
YYD3_k127_49774_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008331 608.0
YYD3_k127_49774_10 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000003267 157.0
YYD3_k127_49774_11 Winged helix DNA-binding domain - - - 0.000000000000000000000000000000000001724 141.0
YYD3_k127_49774_12 succinyl-diaminopimelate desuccinylase activity - - - 0.000000000000000000000000000000000006433 143.0
YYD3_k127_49774_13 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.0000000000000000000000000000002315 127.0
YYD3_k127_49774_14 TonB C terminal K03832 - - 0.0000000000000000005292 96.0
YYD3_k127_49774_15 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00002158 55.0
YYD3_k127_49774_16 - - - - 0.0009762 49.0
YYD3_k127_49774_2 RecF/RecN/SMC N terminal domain K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 406.0
YYD3_k127_49774_3 Involved in the heme and chlorophyll biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0003824,GO:0004109,GO:0005488,GO:0005515,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0042803,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0046501,GO:0046983,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 391.0
YYD3_k127_49774_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 347.0
YYD3_k127_49774_5 WD40-like Beta Propeller K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004638 315.0
YYD3_k127_49774_6 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000000000000000000000000000005138 231.0
YYD3_k127_49774_7 ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component - - - 0.00000000000000000000000000000000000000000000003107 177.0
YYD3_k127_49774_8 MotA TolQ ExbB proton channel K03562 - - 0.00000000000000000000000000000000000000000004957 168.0
YYD3_k127_49774_9 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000902 158.0
YYD3_k127_4983308_0 GntR family K11475 - - 0.00000000000000000000000000000000000000000000000000001048 198.0
YYD3_k127_4983308_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000004458 200.0
YYD3_k127_4983308_2 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000000001712 94.0
YYD3_k127_4983308_3 Protein of unknown function (DUF3060) - - - 0.000000002049 64.0
YYD3_k127_4988137_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 1.272e-197 627.0
YYD3_k127_4988137_1 TIGRFAM cytochrome c nitrate reductase, small subunit K15876 - - 0.000000000000000000000000000000000000000000000000000000000004296 214.0
YYD3_k127_4988137_2 - - - - 0.000000000000000000000000000000000000000000000007457 191.0
YYD3_k127_4988137_3 - - - - 0.00000000000000000000000000001489 125.0
YYD3_k127_4988137_4 gluconolactonase activity - - - 0.00000000000000000000000000005119 127.0
YYD3_k127_4988137_5 PIN domain - - - 0.0000000000000000000003465 102.0
YYD3_k127_4988137_6 Ca-dependent carbohydrate-binding module xylan-binding - - - 0.0000000000000000008241 100.0
YYD3_k127_4988137_7 domain protein - - - 0.00000002003 61.0
YYD3_k127_4988137_8 domain protein - - - 0.00000007101 63.0
YYD3_k127_4990707_0 Belongs to the GARS family K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006099 427.0
YYD3_k127_4990707_1 PFAM Nucleotidyl transferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 391.0
YYD3_k127_4990707_10 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.0000000000000000000000000000000000000000426 155.0
YYD3_k127_4990707_11 von Willebrand factor (vWF) type A domain K07114 - - 0.00000000000000000000000000000000000000006794 164.0
YYD3_k127_4990707_12 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000001305 158.0
YYD3_k127_4990707_13 Yqey-like protein K09117 - - 0.000000000000000000000000000000000003695 142.0
YYD3_k127_4990707_14 holo-[acyl-carrier-protein] synthase activity K00997 - 2.7.8.7 0.000000000000000000000000000002458 123.0
YYD3_k127_4990707_2 MiaB-like tRNA modifying enzyme K18707 - 2.8.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005563 304.0
YYD3_k127_4990707_3 TIGRFAM TIGR00268 family protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003638 285.0
YYD3_k127_4990707_4 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000000000138 273.0
YYD3_k127_4990707_5 HNH nucleases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008717 251.0
YYD3_k127_4990707_6 RNA pseudouridylate synthase K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000003283 227.0
YYD3_k127_4990707_7 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - - 0.000000000000000000000000000000000000000000000003474 179.0
YYD3_k127_4990707_8 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 0.00000000000000000000000000000000000000000000001835 173.0
YYD3_k127_4990707_9 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000004839 175.0
YYD3_k127_4992407_0 Male sterility protein K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008402 426.0
YYD3_k127_4992407_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 345.0
YYD3_k127_4992407_2 Glycosyl transferase family 2 K07011 - - 0.00000000000000000000000000000002623 136.0
YYD3_k127_4992407_3 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000003116 111.0
YYD3_k127_4992407_4 Glycosyl Transferase - - - 0.00000000000000000000000003381 115.0
YYD3_k127_4992407_5 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.00000000000000000000000004503 111.0
YYD3_k127_4992407_6 methyltransferase - - - 0.000000000000000000004639 103.0
YYD3_k127_4992407_7 Glycosyl transferase 4-like domain K12996 - - 0.0001668 44.0
YYD3_k127_499313_0 PKD domain containing protein - - - 0.00000000000000000000000636 108.0
YYD3_k127_499313_2 lipolytic protein G-D-S-L family - - - 0.000000000000000000003748 102.0
YYD3_k127_4996802_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 4.8e-209 657.0
YYD3_k127_4996802_1 PFAM AMP-dependent synthetase and ligase K01897,K18661 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002872 368.0
YYD3_k127_4996802_2 4Fe-4S dicluster domain K05524 - - 0.000000000000000000000000000000001134 135.0
YYD3_k127_4996802_3 MacB-like periplasmic core domain K02004 - - 0.0002845 49.0
YYD3_k127_5009152_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005633 568.0
YYD3_k127_5009152_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 474.0
YYD3_k127_5009152_2 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 404.0
YYD3_k127_5009152_3 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003095 256.0
YYD3_k127_5009152_4 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000005582 234.0
YYD3_k127_5009152_5 Glyoxalase-like domain K06996 - - 0.000000000000000000006988 105.0
YYD3_k127_5009152_6 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000009444 97.0
YYD3_k127_5014387_0 heat shock protein 70 K04043,K04044 - - 9.948e-211 671.0
YYD3_k127_5014387_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 605.0
YYD3_k127_5014387_2 serine-type peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 430.0
YYD3_k127_5014387_3 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.00000000000000000000000000000000000000000000000000000000000000000001809 233.0
YYD3_k127_5014387_4 5'-3' exonuclease, N-terminal resolvase-like domain - - - 0.0000000000000000000000000000000000000000000000000000000002399 206.0
YYD3_k127_5014387_5 phosphatase activity K07025 - - 0.00000000000000000000000000000000000000000000006813 177.0
YYD3_k127_5014387_6 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000009041 131.0
YYD3_k127_5014387_7 PFAM heat shock protein DnaJ K04082 - - 0.000000000000000000000000000004726 125.0
YYD3_k127_5014387_8 Transcriptional regulator - - - 0.000000000000000000000000000005055 126.0
YYD3_k127_5014387_9 FeS assembly protein IscX - - - 0.00000000000000000000003876 104.0
YYD3_k127_502085_0 Domain of unknown function (DUF1730) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007644 348.0
YYD3_k127_502085_1 PFAM Alcohol dehydrogenase GroES-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000005921 240.0
YYD3_k127_502085_2 TonB dependent receptor - - - 0.0002451 48.0
YYD3_k127_5029963_0 DNA polymerase X K02347 - - 9.542e-200 637.0
YYD3_k127_5029963_1 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000000000006499 205.0
YYD3_k127_5057311_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 432.0
YYD3_k127_5057311_1 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.0000000000000000000000000000001039 129.0
YYD3_k127_5057311_2 - - - - 0.0000000001098 68.0
YYD3_k127_5057311_3 Protein kinase domain K12132 - 2.7.11.1 0.00000003088 60.0
YYD3_k127_5057311_4 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0009181 45.0
YYD3_k127_5088196_0 Putative glucoamylase - - - 1.477e-210 663.0
YYD3_k127_5088196_1 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001237 284.0
YYD3_k127_5096468_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000424 569.0
YYD3_k127_5096468_1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 547.0
YYD3_k127_5096468_10 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000000002504 155.0
YYD3_k127_5096468_11 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 - 1.6.5.3 0.00000000000000000000000000000000000003707 145.0
YYD3_k127_5096468_12 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000003189 127.0
YYD3_k127_5096468_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 385.0
YYD3_k127_5096468_3 TIGRFAM molybdenum cofactor synthesis K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 298.0
YYD3_k127_5096468_4 NADH ubiquinone oxidoreductase, 20 Kd subunit K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005638 282.0
YYD3_k127_5096468_5 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003806 270.0
YYD3_k127_5096468_6 4Fe-4S dicluster domain K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000004661 196.0
YYD3_k127_5096468_7 Respiratory-chain NADH dehydrogenase, 30 Kd subunit K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000004989 196.0
YYD3_k127_5096468_8 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000008978 184.0
YYD3_k127_5096468_9 TIGRFAM molybdenum cofactor synthesis - - - 0.00000000000000000000000000000000000000000007866 164.0
YYD3_k127_5112992_0 Trehalose utilisation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004434 333.0
YYD3_k127_5112992_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007811 334.0
YYD3_k127_5112992_10 - - - - 0.000000001499 64.0
YYD3_k127_5112992_2 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000008147 172.0
YYD3_k127_5112992_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000008817 177.0
YYD3_k127_5112992_4 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000001656 126.0
YYD3_k127_5112992_5 - - - - 0.00000000000000000000000007187 112.0
YYD3_k127_5112992_6 Amidohydrolase family - - - 0.000000000000000000006693 108.0
YYD3_k127_5112992_8 - - - - 0.00000000000000000001184 101.0
YYD3_k127_5112992_9 - - - - 0.000000000004991 72.0
YYD3_k127_5141236_0 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000002876 167.0
YYD3_k127_5141236_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000008529 76.0
YYD3_k127_5148301_0 Metallopeptidase family M24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009742 604.0
YYD3_k127_5148301_1 PFAM Transketolase central region K21417 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005759 504.0
YYD3_k127_5148301_2 PFAM dehydrogenase E1 component K21416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004036 449.0
YYD3_k127_5148301_3 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 323.0
YYD3_k127_5148301_4 Catalytic domain of components of various dehydrogenase complexes K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007515 304.0
YYD3_k127_5148301_5 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000003849 188.0
YYD3_k127_5162973_0 PFAM ABC transporter related K06020 - 3.6.3.25 1.508e-299 925.0
YYD3_k127_5162973_1 Dehydrogenase K00030,K00052 - 1.1.1.41,1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 556.0
YYD3_k127_5162973_10 Belongs to the FGGY kinase family K00854 - 2.7.1.17 0.0000000000000000000000000000000000000000000000003006 193.0
YYD3_k127_5162973_11 Protein of unknown function (DUF1003) - - - 0.000000000000000000000000000000000000001444 150.0
YYD3_k127_5162973_12 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000005957 97.0
YYD3_k127_5162973_13 Cro/C1-type HTH DNA-binding domain - - - 0.00000004946 55.0
YYD3_k127_5162973_14 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000004024 52.0
YYD3_k127_5162973_15 Belongs to the peptidase S8 family - - - 0.0000398 49.0
YYD3_k127_5162973_2 6-phosphogluconate dehydrogenase K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000545 406.0
YYD3_k127_5162973_3 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 378.0
YYD3_k127_5162973_4 Sensor histidine kinase, HAMP domain-containing K07644 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 346.0
YYD3_k127_5162973_5 COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 319.0
YYD3_k127_5162973_6 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 306.0
YYD3_k127_5162973_7 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000002453 235.0
YYD3_k127_5162973_8 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000001526 226.0
YYD3_k127_5162973_9 SMP-30/Gluconolaconase/LRE-like region - - - 0.0000000000000000000000000000000000000000000000001614 189.0
YYD3_k127_5186223_0 ABC-type Fe3 -hydroxamate transport system, periplasmic K02016 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 317.0
YYD3_k127_5186223_1 cobalamin-transporting ATPase activity K02014,K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003031 262.0
YYD3_k127_5186223_2 PFAM Adenosylcobinamide amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000002576 242.0
YYD3_k127_5186223_3 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000005113 216.0
YYD3_k127_5186223_4 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000003384 139.0
YYD3_k127_5186223_6 - - - - 0.000009527 51.0
YYD3_k127_5195453_0 Pyridoxal-dependent decarboxylase conserved domain K01593,K01634 - 4.1.1.105,4.1.1.28,4.1.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 529.0
YYD3_k127_5195453_1 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002554 428.0
YYD3_k127_5195453_2 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 345.0
YYD3_k127_5195453_3 PFAM peptidase M24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001115 292.0
YYD3_k127_5195453_4 shikimate 3-dehydrogenase (NADP+) activity K00800,K10669 GO:0003674,GO:0003824,GO:0003866,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19,2.7.1.160 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008842 273.0
YYD3_k127_5195453_5 Transporter associated domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000001313 250.0
YYD3_k127_5195453_6 CarD-like/TRCF domain K07736 - - 0.000000000000000000000000000000000000000001238 162.0
YYD3_k127_5195453_7 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0000000000000000000000000000001438 134.0
YYD3_k127_5199435_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1100.0
YYD3_k127_5199435_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.066e-227 713.0
YYD3_k127_5199435_2 Tex-like protein N-terminal domain K06959 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 616.0
YYD3_k127_5199435_3 Acyl-CoA dehydrogenase, C-terminal domain K00248,K09478 - 1.3.8.1,1.3.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004563 549.0
YYD3_k127_5199435_4 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 367.0
YYD3_k127_5199435_5 membrane protein (homolog of Drosophila rhomboid) K19225 - 3.4.21.105 0.000000000000000000000000000000000000000000000009623 185.0
YYD3_k127_5203119_0 Prolyl oligopeptidase family - - - 1.914e-247 781.0
YYD3_k127_5203466_0 ABC transporter K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006988 467.0
YYD3_k127_5203466_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 398.0
YYD3_k127_5203466_2 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 386.0
YYD3_k127_5203466_3 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000000000000000000000000000000000000000000000001027 192.0
YYD3_k127_5203466_4 Domain of unknown function (DUF1732) - - - 0.0000000000000000000000000000000000000000000000000004051 195.0
YYD3_k127_5203466_5 PTS system fructose IIA component K02793,K02794,K02821 - 2.7.1.191,2.7.1.194 0.000000000000000000000000000002245 126.0
YYD3_k127_5203466_6 Phosphocarrier protein HPr K08485,K11189 - - 0.00000000005058 66.0
YYD3_k127_5203466_7 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00004314 50.0
YYD3_k127_5223383_0 secretion system protein K02283 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 522.0
YYD3_k127_5223383_1 Belongs to the GSP D family K02280 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002977 358.0
YYD3_k127_5223383_2 PFAM type II secretion system K12510 - - 0.000000000000000000000000000000000000000000000000000000009833 209.0
YYD3_k127_5223383_3 PFAM type II secretion system K12511 - - 0.000000000000000000000000000000000000000000000000006362 194.0
YYD3_k127_5223383_4 pilus assembly protein K02282 - - 0.0000000000000000000000000005834 127.0
YYD3_k127_5223383_5 helix_turn_helix, Lux Regulon - - - 0.000000000000000000001097 100.0
YYD3_k127_5223383_6 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000000000417 96.0
YYD3_k127_5223383_7 Transposase IS116/IS110/IS902 family - - - 0.0000272 47.0
YYD3_k127_5223383_8 Tetratricopeptide repeat - - - 0.000679 52.0
YYD3_k127_5226064_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009405,GO:0009408,GO:0009628,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010646,GO:0010647,GO:0016032,GO:0016462,GO:0016465,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018995,GO:0019058,GO:0019068,GO:0020003,GO:0022610,GO:0023051,GO:0023056,GO:0030430,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033643,GO:0033644,GO:0033646,GO:0033647,GO:0033648,GO:0033655,GO:0035639,GO:0035821,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0043900,GO:0043903,GO:0044174,GO:0044175,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044218,GO:0044279,GO:0044403,GO:0044406,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044650,GO:0044764,GO:0046812,GO:0046872,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051704,GO:0051817,GO:0052047,GO:0052212,GO:0061077,GO:0065007,GO:0065010,GO:0097159,GO:0097367,GO:0101031,GO:1901222,GO:1901224,GO:1901265,GO:1901363,GO:1902531,GO:1902533,GO:1990220,GO:2000535 - 3.246e-239 750.0
YYD3_k127_5226064_1 Peptidase M56 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000768 438.0
YYD3_k127_5226064_10 ABC-2 family transporter protein - - - 0.0002817 52.0
YYD3_k127_5226064_11 FHA domain - - - 0.000357 50.0
YYD3_k127_5226064_12 Carboxypeptidase regulatory-like domain - - - 0.0007861 52.0
YYD3_k127_5226064_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000002196 240.0
YYD3_k127_5226064_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000009119 201.0
YYD3_k127_5226064_4 domain protein - - - 0.0000000000000000000000000000000000002043 160.0
YYD3_k127_5226064_5 von Willebrand factor, type A - - - 0.0000000000000000000008409 106.0
YYD3_k127_5226064_6 oxidoreductase activity K12511 - - 0.0000000000000000007594 98.0
YYD3_k127_5226064_7 von Willebrand factor, type A - - - 0.0000000000003678 80.0
YYD3_k127_5226064_8 Histidine kinase - - - 0.00000000004981 67.0
YYD3_k127_5226064_9 Predicted membrane protein (DUF2085) - - - 0.0001254 50.0
YYD3_k127_5226360_0 Transcriptional regulator PadR-like family K10947 - - 0.00000000000000000000000000000000000001578 147.0
YYD3_k127_5226360_1 Alpha beta hydrolase - - - 0.0000000000000000001225 95.0
YYD3_k127_5226360_2 - - - - 0.00000000000000001745 94.0
YYD3_k127_5226360_3 - - - - 0.000000009253 64.0
YYD3_k127_5226360_4 protein kinase activity - - - 0.000004655 57.0
YYD3_k127_5229213_0 Amidase K21801 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006779 272.0
YYD3_k127_5229213_1 - - - - 0.0000000000000001001 86.0
YYD3_k127_5234144_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000005871 265.0
YYD3_k127_5234144_1 Phosphotransferase enzyme family K02204 - 2.7.1.39 0.000000000000000000000000000000000000000002823 162.0
YYD3_k127_5234144_2 Protein of unknown function (DUF1697) - - - 0.0002157 50.0
YYD3_k127_5245363_0 PQQ-like domain K00114 - 1.1.2.8 3.61e-238 747.0
YYD3_k127_5245363_1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 1.296e-200 637.0
YYD3_k127_5245363_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009725 578.0
YYD3_k127_5245363_3 Cytochrome C oxidase, cbb3-type, subunit III K00406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002014 280.0
YYD3_k127_5245363_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000286 114.0
YYD3_k127_5245363_5 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.00000000001462 73.0
YYD3_k127_5245363_6 - - - - 0.00001788 55.0
YYD3_k127_5263738_0 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000427 245.0
YYD3_k127_5263738_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000002006 144.0
YYD3_k127_5263738_2 Transcriptional regulatory protein, C terminal - - - 0.000000000001189 70.0
YYD3_k127_5268145_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000003565 83.0
YYD3_k127_5268145_1 TIGRFAM VWFA-related Acidobacterial domain - - - 0.0000000005847 71.0
YYD3_k127_527218_0 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005092 272.0
YYD3_k127_527218_1 Protein of unknown function (DUF3237) - - - 0.00000000000000000000000000000000000000008932 155.0
YYD3_k127_527218_2 4Fe-4S dicluster domain K03941 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.6.5.3,1.6.99.3 0.000000002801 62.0
YYD3_k127_527218_3 - - - - 0.000001513 55.0
YYD3_k127_5272596_0 Domain of Unknown Function (DUF748) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 349.0
YYD3_k127_5285175_0 Zinc carboxypeptidase - - - 4.252e-228 719.0
YYD3_k127_5285175_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000275 515.0
YYD3_k127_5285175_2 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000009682 234.0
YYD3_k127_5285175_3 Outer membrane lipoprotein-sorting protein - - - 0.0000000000000000000000000000002057 132.0
YYD3_k127_5287742_0 PFAM amidohydrolase 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 374.0
YYD3_k127_5287742_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000005016 173.0
YYD3_k127_5287742_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000001507 91.0
YYD3_k127_5287742_3 Two component, sigma54 specific, transcriptional regulator, Fis family K07712 - - 0.000001267 53.0
YYD3_k127_5297153_0 His Kinase A (phosphoacceptor - - - 0.0000000000000000000000000000000000000000000000000000001631 213.0
YYD3_k127_5297153_1 Family of unknown function (DUF1028) - - - 0.0000000000000000000000000000000000000000000000000001681 194.0
YYD3_k127_5297153_2 - - - - 0.000000000000000000000000000000000000000000006655 173.0
YYD3_k127_5297153_3 Histidine kinase-like ATPase domain K01338,K04757,K06379,K08282,K17752 - 2.7.11.1,3.4.21.53 0.0000000000000000000000000000000000000003443 167.0
YYD3_k127_5297153_4 - - - - 0.0000000000000001246 85.0
YYD3_k127_5297553_0 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009532 442.0
YYD3_k127_5297553_1 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 313.0
YYD3_k127_5297553_2 - - - - 0.000000000000000000000000000000000000000000000000000002041 203.0
YYD3_k127_5297553_3 amine dehydrogenase activity - - - 0.00000000000000000000000000000002759 132.0
YYD3_k127_5297553_4 DinB family K07552 - - 0.00000000000000000009274 96.0
YYD3_k127_5334932_0 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006275 549.0
YYD3_k127_5334932_1 aminopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003661 264.0
YYD3_k127_5342627_0 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 384.0
YYD3_k127_5342627_1 Methyltransferase K15256 - - 0.00000000000000000000000000000000000000000000000000001403 194.0
YYD3_k127_5342627_2 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000001183 52.0
YYD3_k127_5350945_0 4 iron, 4 sulfur cluster binding K07139 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464,GO:0048037,GO:0051536,GO:0051539,GO:0051540 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005704 331.0
YYD3_k127_5350945_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005483 259.0
YYD3_k127_5350945_10 ubiE/COQ5 methyltransferase family K13623 - - 0.000008618 52.0
YYD3_k127_5350945_2 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000363 239.0
YYD3_k127_5350945_3 PFAM Rhomboid family - - - 0.00000000000000000000000000000000000000000000000001187 189.0
YYD3_k127_5350945_4 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000004891 156.0
YYD3_k127_5350945_5 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000002213 145.0
YYD3_k127_5350945_6 transposase IS116 IS110 IS902 family protein K07486 - - 0.00000000000000000000000000000002512 133.0
YYD3_k127_5350945_7 cell redox homeostasis - - - 0.0000000000000000000000000000003668 129.0
YYD3_k127_5350945_9 Carboxypeptidase regulatory-like domain - - - 0.00000000004471 68.0
YYD3_k127_5354893_0 Putative modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 510.0
YYD3_k127_5354893_1 protease with the C-terminal PDZ domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 370.0
YYD3_k127_5354893_2 Putative modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004092 291.0
YYD3_k127_5354893_3 heme binding K08259 - 3.4.24.75 0.0000000000000000000000000000000000000000000000003017 187.0
YYD3_k127_5354893_4 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000258 131.0
YYD3_k127_5354893_5 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000005454 113.0
YYD3_k127_5354893_6 - - - - 0.0000000000000000001041 96.0
YYD3_k127_5358223_0 Putative amidoligase enzyme (DUF2126) - - - 0.0 1720.0
YYD3_k127_5358223_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 4.679e-203 644.0
YYD3_k127_5358223_10 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.0000005419 54.0
YYD3_k127_5358223_2 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004624 415.0
YYD3_k127_5358223_3 Required for morphogenesis under gluconeogenic growth conditions - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 317.0
YYD3_k127_5358223_4 proline dehydrogenase activity K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003372 306.0
YYD3_k127_5358223_5 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000000000000002489 257.0
YYD3_k127_5358223_6 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000001055 163.0
YYD3_k127_5358223_7 Methyltransferase type 11 K01921 - 6.3.2.4 0.000000000000000000000000000000000001341 143.0
YYD3_k127_5358223_8 PFAM D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.000000000000000000000000000000001139 147.0
YYD3_k127_5358223_9 Tetratricopeptide repeat - - - 0.000000000000002082 85.0
YYD3_k127_5397275_0 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 313.0
YYD3_k127_5397275_1 Domain of unknown function (DU1801) - - - 0.00000000000000000000000000000000000000009883 156.0
YYD3_k127_5397275_2 PFAM CBS domain - - - 0.000000000000000000000000000000000000005935 152.0
YYD3_k127_5397275_3 DNA topoisomerase (ATP-hydrolyzing) inhibitor activity K07471,K13652,K19056 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000002226 143.0
YYD3_k127_5397275_4 - - - - 0.00000000000000000000002668 106.0
YYD3_k127_5397539_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1019.0
YYD3_k127_5397539_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000003394 227.0
YYD3_k127_5397539_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000003135 113.0
YYD3_k127_5397539_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000007308 77.0
YYD3_k127_5408438_0 B12 binding domain - - - 3.163e-246 768.0
YYD3_k127_5408438_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004219 386.0
YYD3_k127_5408438_3 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007055 275.0
YYD3_k127_5408438_4 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.000000000000000000001009 107.0
YYD3_k127_5408438_5 B12 binding domain - - - 0.0000000000000003712 81.0
YYD3_k127_5408438_6 O-antigen polymerase - - - 0.00000000007549 74.0
YYD3_k127_5420741_0 PFAM NAD dependent epimerase dehydratase family K12454 - 5.1.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 572.0
YYD3_k127_5420741_1 COG0463 Glycosyltransferases involved in cell wall K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 408.0
YYD3_k127_5420741_2 Male sterility protein K12454 - 5.1.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 368.0
YYD3_k127_5420741_3 Domain of unknown function (DUF4347) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003983 337.0
YYD3_k127_5420741_4 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000001264 222.0
YYD3_k127_5420741_5 PFAM 3-carboxy-cis,cis-muconate lactonizing enzyme K01317 - 3.4.21.10 0.000000000000000000000000000000001851 153.0
YYD3_k127_5420741_6 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000003868 118.0
YYD3_k127_5420741_7 - - - - 0.00004901 49.0
YYD3_k127_542333_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 413.0
YYD3_k127_542333_1 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002182 260.0
YYD3_k127_542333_2 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.00000000000000000000000000000006375 127.0
YYD3_k127_5440819_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007842 421.0
YYD3_k127_5440819_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000696 343.0
YYD3_k127_5440819_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000004387 242.0
YYD3_k127_5440819_3 Had-superfamily hydrolase, subfamily ia, variant 1 - - - 0.0000000000000000000000000000000000000000000000000000000004805 209.0
YYD3_k127_5440819_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000349 131.0
YYD3_k127_5440819_5 Protein of unknown function (DUF952) K00799,K01560,K21420 - 2.3.2.29,2.5.1.18,3.8.1.2 0.00000000000000000000000000000004322 129.0
YYD3_k127_5440819_6 Winged helix DNA-binding domain K09927 - - 0.00000000000000000000000000000007613 128.0
YYD3_k127_5440819_7 Domain of unknown function (DUF4252) - - - 0.00000000000000321 83.0
YYD3_k127_5440819_8 - - - - 0.000003034 53.0
YYD3_k127_5454309_0 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 6.502e-213 673.0
YYD3_k127_5454309_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000002019 171.0
YYD3_k127_5454309_2 protein kinase activity K13582,K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000007657 162.0
YYD3_k127_5454309_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000005125 144.0
YYD3_k127_5455927_0 AI-2E family transporter - - - 0.000000000000000000000000000000000000000004939 160.0
YYD3_k127_5455927_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000005771 156.0
YYD3_k127_5457734_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 430.0
YYD3_k127_5457734_1 DNA-templated transcription, initiation K03088 - - 0.0000000000002362 78.0
YYD3_k127_5457734_2 Tetratricopeptide repeat - - - 0.00003956 55.0
YYD3_k127_5485971_0 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000718 123.0
YYD3_k127_5485971_1 Penicillinase repressor - - - 0.000000000000000000001319 98.0
YYD3_k127_5485971_2 BlaR1 peptidase M56 - - - 0.000000000004783 75.0
YYD3_k127_5504356_0 C-terminal, D2-small domain, of ClpB protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005985 443.0
YYD3_k127_5504356_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0001130,GO:0001131,GO:0001141,GO:0001217,GO:0002161,GO:0002196,GO:0003674,GO:0003700,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016597,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0052689,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:0140110,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 409.0
YYD3_k127_5504356_2 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 357.0
YYD3_k127_5504356_3 glycosyl transferase group 1 K00754 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 331.0
YYD3_k127_5504356_4 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000009518 142.0
YYD3_k127_5504356_5 - - - - 0.000000000001005 79.0
YYD3_k127_5507755_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 449.0
YYD3_k127_5507755_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 294.0
YYD3_k127_5507755_2 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0018282,GO:0018283,GO:0019538,GO:0022607,GO:0030091,GO:0031163,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051186,GO:0071704,GO:0071840,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000002599 210.0
YYD3_k127_5542572_0 Mur ligase family, catalytic domain K02558 - 6.3.2.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 413.0
YYD3_k127_5542572_1 TIGRFAM intracellular protease, PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000004708 123.0
YYD3_k127_5542572_2 - - - - 0.00001566 52.0
YYD3_k127_5542572_3 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00006446 47.0
YYD3_k127_5546858_0 COG0644 Dehydrogenases (flavoproteins) - - - 1.442e-215 676.0
YYD3_k127_5546858_1 protein kinase related protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 317.0
YYD3_k127_5546858_2 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000002899 176.0
YYD3_k127_5556017_0 - - - - 0.00000000000000000000000003445 120.0
YYD3_k127_5556017_2 - - - - 0.00003317 47.0
YYD3_k127_5559196_0 AAA domain - - - 0.0 1115.0
YYD3_k127_5559196_1 Sulfatase K01130 - 3.1.6.1 2.863e-283 874.0
YYD3_k127_5559196_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008731 492.0
YYD3_k127_5559196_3 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508 484.0
YYD3_k127_5559196_4 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.0000000000000000000000000000000000000000000000000000000000000000002935 239.0
YYD3_k127_5568715_0 PFAM glycine cleavage T protein (aminomethyl transferase) - - - 2.014e-198 629.0
YYD3_k127_5568715_1 Aldehyde dehydrogenase family K13877 - 1.2.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000308 602.0
YYD3_k127_5568715_10 - - - - 0.0000000000000000000000000000002137 136.0
YYD3_k127_5568715_11 Belongs to the DapA family K01714,K13876 - 4.2.1.43,4.3.3.7 0.0000000000000000000000000000006603 122.0
YYD3_k127_5568715_13 - - - - 0.000000000000008553 87.0
YYD3_k127_5568715_2 Catechol dioxygenase N terminus K03381 - 1.13.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007983 459.0
YYD3_k127_5568715_3 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004494 304.0
YYD3_k127_5568715_4 membrane-anchored protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001966 277.0
YYD3_k127_5568715_6 Peroxiredoxin K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000001024 210.0
YYD3_k127_5568715_7 - - - - 0.0000000000000000000000000000000000000000000000000000000002952 217.0
YYD3_k127_5568715_8 - - - - 0.0000000000000000000000000000000000000000000005741 185.0
YYD3_k127_5568715_9 CHASE2 K01768 - 4.6.1.1 0.00000000000000000000000000000000004781 143.0
YYD3_k127_5577879_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 9.16e-215 680.0
YYD3_k127_5577879_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002534 557.0
YYD3_k127_5577879_10 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000001107 226.0
YYD3_k127_5577879_11 PFAM von Willebrand factor type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000004023 218.0
YYD3_k127_5577879_12 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000002258 220.0
YYD3_k127_5577879_13 AraC-like ligand binding domain - - - 0.00000000000000000000000000000000000000000000000000003105 189.0
YYD3_k127_5577879_14 C4-type zinc ribbon domain K07164 - - 0.000000000000000000000000000000000000025 153.0
YYD3_k127_5577879_2 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003247 536.0
YYD3_k127_5577879_3 gluconolactonase activity K01053 - 3.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 443.0
YYD3_k127_5577879_4 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005716 369.0
YYD3_k127_5577879_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 337.0
YYD3_k127_5577879_6 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 317.0
YYD3_k127_5577879_7 PFAM UbiA prenyltransferase K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 316.0
YYD3_k127_5577879_8 Metallopeptidase family M24 K01262 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0016787,GO:0019538,GO:0030145,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001736 292.0
YYD3_k127_5577879_9 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000001215 234.0
YYD3_k127_5605536_0 PQQ-like domain K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 488.0
YYD3_k127_5605536_1 ABC-type nitrate sulfonate bicarbonate transport system permease component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 372.0
YYD3_k127_5605536_2 PFAM ABC transporter related K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 346.0
YYD3_k127_5605536_3 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 318.0
YYD3_k127_5605536_4 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000000000000001753 213.0
YYD3_k127_5605536_6 domain protein K14194 - - 0.00000005182 66.0
YYD3_k127_5610964_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 5.249e-194 617.0
YYD3_k127_5610964_1 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 355.0
YYD3_k127_5610964_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 330.0
YYD3_k127_5610964_3 C-terminal AAA-associated domain K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005311 291.0
YYD3_k127_5610964_4 ABC nitrate sulphonate bicarbonate family transporter, ATPase subunit K02049 - - 0.000000000000000000000000000000000004867 143.0
YYD3_k127_5610964_5 peroxiredoxin activity - - - 0.0000000000000000000000000000000003639 139.0
YYD3_k127_5610964_6 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000005004 92.0
YYD3_k127_5630714_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 365.0
YYD3_k127_5630714_1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.0000000000000000000000000000000000001118 149.0
YYD3_k127_5630714_2 KR domain - - - 0.000000000000003805 79.0
YYD3_k127_5633280_0 CAAX protease self-immunity - - - 0.00000000000000000000000000000000000008716 151.0
YYD3_k127_5633280_1 Peptidase family M1 domain K01256,K13722 - 3.4.11.2 0.00000000000000000003034 106.0
YYD3_k127_5633280_2 Sigma-70 region 2 K03088 - - 0.0000000001068 70.0
YYD3_k127_5651906_0 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007711 533.0
YYD3_k127_5651906_1 AMP binding - - - 0.000000000000000000000000000000000000000000000000000000000000001212 229.0
YYD3_k127_5651906_2 Universal stress protein - - - 0.000000000000000000004443 104.0
YYD3_k127_5651906_3 AMP binding - - - 0.00000000000000000004293 96.0
YYD3_k127_5651906_4 Universal stress protein family - - - 0.0000000001148 73.0
YYD3_k127_565307_0 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000002586 244.0
YYD3_k127_565307_1 pfam abc K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000004026 236.0
YYD3_k127_565307_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000008284 196.0
YYD3_k127_565307_3 Surface antigen - - - 0.0000000000000000127 96.0
YYD3_k127_565307_4 Belongs to the MlaE permease family K02066 - - 0.000000000002365 68.0
YYD3_k127_5655184_0 TonB-dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003364 462.0
YYD3_k127_5655184_1 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001957 284.0
YYD3_k127_5655184_2 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008288 244.0
YYD3_k127_5655184_3 SnoaL-like domain - - - 0.000000000000000000000000000000000000000373 152.0
YYD3_k127_5655184_4 Putative esterase K07214 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0008150,GO:0008152,GO:0008849,GO:0009056,GO:0009237,GO:0009238,GO:0009712,GO:0009987,GO:0016787,GO:0016788,GO:0018958,GO:0019336,GO:0019439,GO:0019614,GO:0019748,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0046214,GO:0046215,GO:0046483,GO:0046700,GO:0051186,GO:0051187,GO:0071704,GO:0090487,GO:1901360,GO:1901361,GO:1901575,GO:1901615,GO:1901616 - 0.00000000000000000001416 106.0
YYD3_k127_5655184_5 Pfam:DUF2029 - - - 0.00000000000003436 84.0
YYD3_k127_5655184_6 nucleic acid-binding protein - - - 0.000003312 54.0
YYD3_k127_5664954_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 574.0
YYD3_k127_5664954_1 protein-glutamate O-methyltransferase activity K00575,K03408,K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006121 300.0
YYD3_k127_5664954_2 COG0515 Serine threonine protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002425 274.0
YYD3_k127_5664954_3 addiction module antidote protein HigA K21498 - - 0.000000000000000000001377 98.0
YYD3_k127_5664954_4 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.0000000002481 61.0
YYD3_k127_567029_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000009184 178.0
YYD3_k127_567029_1 - - - - 0.00003168 53.0
YYD3_k127_5678222_0 Dehydrogenase K17760 - 1.1.9.1 8.811e-258 815.0
YYD3_k127_5678222_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 557.0
YYD3_k127_5678222_2 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008213 305.0
YYD3_k127_5678222_3 - - - - 0.00000000009691 72.0
YYD3_k127_5678222_4 Sporulation related domain - - - 0.0000008686 56.0
YYD3_k127_5679588_0 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 340.0
YYD3_k127_5679588_1 acr, cog1565 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008338 339.0
YYD3_k127_5679588_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000001027 189.0
YYD3_k127_5679588_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000048 55.0
YYD3_k127_5692999_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K20974 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 471.0
YYD3_k127_5692999_1 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 306.0
YYD3_k127_5692999_2 ketosteroid isomerase - - - 0.00003737 50.0
YYD3_k127_5714293_0 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 585.0
YYD3_k127_5714293_1 Insulinase (Peptidase family M16) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 560.0
YYD3_k127_5714293_2 Aldehyde dehydrogenase family K13922,K18119 - 1.2.1.76,1.2.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 526.0
YYD3_k127_5743207_0 iron ion homeostasis - - - 1.474e-204 670.0
YYD3_k127_5743207_1 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003906 284.0
YYD3_k127_5743207_2 HAF family - - - 0.000000000000000000000000000000000000000000000007086 195.0
YYD3_k127_5743207_3 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000000003895 93.0
YYD3_k127_5743207_4 CHASE2 K01768 - 4.6.1.1 0.000000000000001836 91.0
YYD3_k127_5752189_0 PFAM TonB-dependent Receptor Plug - - - 3.079e-199 659.0
YYD3_k127_5752189_1 TIGRFAM Carbamoyl-phosphate synthase, small subunit K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005423 467.0
YYD3_k127_5752189_2 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000001216 237.0
YYD3_k127_5752189_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000009994 215.0
YYD3_k127_5752189_4 Belongs to the CarB family K01955 - 6.3.5.5 0.0000000000000000000000000000000002693 131.0
YYD3_k127_5755457_0 Pfam:KaiC K08482 - - 1.345e-224 710.0
YYD3_k127_5755457_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 533.0
YYD3_k127_5755457_2 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 293.0
YYD3_k127_5755457_3 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000002118 221.0
YYD3_k127_5755457_4 KaiB K08481 - - 0.0000000000000000000000000000000000002054 143.0
YYD3_k127_5755457_5 photoreceptor activity K08481 - - 0.000000000000000000000000000006149 124.0
YYD3_k127_5755457_6 - - - - 0.0000000000000000000000005273 115.0
YYD3_k127_5755457_7 PFAM ATP-binding region, ATPase domain protein - - - 0.000000000000000000006702 108.0
YYD3_k127_5755457_8 - - - - 0.000000000002267 73.0
YYD3_k127_5755457_9 Squalene-hopene cyclase C-terminal domain K06045 - 4.2.1.129,5.4.99.17 0.00007388 50.0
YYD3_k127_5756728_0 PFAM CBS domain containing protein K01697,K01738 - 2.5.1.47,4.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 482.0
YYD3_k127_5756728_2 Pyridoxal-phosphate dependent enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003105 314.0
YYD3_k127_5756728_3 WYL domain K13572 - - 0.000000000000000000000000000000000000000000000000000006243 203.0
YYD3_k127_5756728_4 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000001969 132.0
YYD3_k127_5759771_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823 - 2.6.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003787 513.0
YYD3_k127_5759771_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 508.0
YYD3_k127_5759771_2 Nuclease-related domain K07460 - - 0.00000000000000000002733 94.0
YYD3_k127_5759771_3 von Willebrand factor (vWF) type A domain K07114 - - 0.00000000001151 68.0
YYD3_k127_5759771_4 - - - - 0.0002405 44.0
YYD3_k127_5780380_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 389.0
YYD3_k127_5780380_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000127 252.0
YYD3_k127_5780380_2 Methyltransferase domain K22309 - 2.1.1.344 0.00000000000000000000000000000000000000000000000000000005744 207.0
YYD3_k127_5780380_3 Spermine/spermidine synthase domain - - - 0.000000000000000000000000000000007278 136.0
YYD3_k127_5781155_0 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 425.0
YYD3_k127_5781155_1 TIGRFAM MazG family protein K02428,K04765 - 3.6.1.66,3.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000904 280.0
YYD3_k127_5781155_10 protein conserved in bacteria - - - 0.0000003612 55.0
YYD3_k127_5781155_2 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000915 261.0
YYD3_k127_5781155_3 Amidohydrolase family K12960,K20810 - 3.5.4.28,3.5.4.31,3.5.4.40 0.0000000000000000000000000000000000000000000000000000000000000000000000004877 263.0
YYD3_k127_5781155_4 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000009452 245.0
YYD3_k127_5781155_5 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000003526 224.0
YYD3_k127_5781155_6 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000002359 186.0
YYD3_k127_5781155_7 response regulator K07685 - - 0.0000000000000000000000000000000000000000003472 168.0
YYD3_k127_5781155_8 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000003381 73.0
YYD3_k127_5782292_0 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 370.0
YYD3_k127_5782292_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 324.0
YYD3_k127_5782292_10 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000005646 64.0
YYD3_k127_5782292_11 exonuclease activity K16899 - 3.6.4.12 0.000000007075 68.0
YYD3_k127_5782292_2 UvrD REP helicase K16898 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000001103 278.0
YYD3_k127_5782292_3 Thioredoxin K03672 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000007908 205.0
YYD3_k127_5782292_4 Ferredoxin K02230 - 6.6.1.2 0.00000000000000000000000000000000000000000000001165 175.0
YYD3_k127_5782292_5 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000004098 160.0
YYD3_k127_5782292_6 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000001788 139.0
YYD3_k127_5782292_7 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000003221 128.0
YYD3_k127_5782292_8 Domain of unknown function (DUF1992) - - - 0.00000000000000000000000005865 110.0
YYD3_k127_5782292_9 lactoylglutathione lyase activity K00941,K01724,K01759,K07032,K08234 - 2.7.1.49,2.7.4.7,4.2.1.96,4.4.1.5 0.0000000000000000000008614 99.0
YYD3_k127_5804408_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 1.918e-206 654.0
YYD3_k127_5804408_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 472.0
YYD3_k127_5804408_2 Alcohol dehydrogenase GroES-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007328 441.0
YYD3_k127_5804408_3 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004373 402.0
YYD3_k127_5804408_4 Protein of unknown function (DUF1810) - - - 0.0000000000000000000000000000000000000000000000004562 178.0
YYD3_k127_5804408_5 RNA recognition motif - - - 0.0000000000000000000000000000005087 124.0
YYD3_k127_5804408_6 photosystem II stabilization K02237 - - 0.000000003282 66.0
YYD3_k127_5804408_7 - - - - 0.00001196 50.0
YYD3_k127_5804408_8 Cytochrome c, class I K05301 - 1.8.2.1 0.0004264 51.0
YYD3_k127_5805035_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006265 613.0
YYD3_k127_5805035_1 cytochrome K17230 - - 0.00000000000000000000000000000000000000000000000000000000000000002208 235.0
YYD3_k127_5805035_2 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000000000000000000000000000000001233 215.0
YYD3_k127_5805035_3 lactoylglutathione lyase activity K03088 - - 0.0000000000000000000000000000000000000000000000000000005773 203.0
YYD3_k127_5805035_4 Belongs to the UPF0502 family K09915 - - 0.0000000000000000000000000000000000000000000000000004224 197.0
YYD3_k127_5805035_5 Subtilase family K14743 - - 0.00000000000000000000000000000000004179 145.0
YYD3_k127_5805035_6 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000001712 131.0
YYD3_k127_5805035_7 - - - - 0.00000000000000000000001749 106.0
YYD3_k127_5805035_8 Cytochrome c - - - 0.00001217 53.0
YYD3_k127_5810763_0 DNA topological change K03168 - 5.99.1.2 4.339e-223 714.0
YYD3_k127_5810763_1 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005133 524.0
YYD3_k127_5810763_10 - - - - 0.000000000000000000000000000000000000002222 153.0
YYD3_k127_5810763_11 - - - - 0.0000000000000000000000000001311 124.0
YYD3_k127_5810763_2 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003877 519.0
YYD3_k127_5810763_3 Sulfatase K01133 - 3.1.6.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007067 487.0
YYD3_k127_5810763_4 ankyrin repeat K15503 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 448.0
YYD3_k127_5810763_5 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 375.0
YYD3_k127_5810763_6 Dicarboxylate carrier MatC domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 338.0
YYD3_k127_5810763_7 Putative serine dehydratase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001557 243.0
YYD3_k127_5810763_8 Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ K06137 - 1.3.3.11 0.000000000000000000000000000000000000000000000000000000000000000001112 236.0
YYD3_k127_5810763_9 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000000000000000000000000000002136 160.0
YYD3_k127_5811200_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 440.0
YYD3_k127_5811200_1 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003294 284.0
YYD3_k127_5822681_0 ABC-type multidrug transport system ATPase K01990,K11050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 461.0
YYD3_k127_5822681_1 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 415.0
YYD3_k127_5822681_2 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003754 361.0
YYD3_k127_5822681_3 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639,K00652 - 2.3.1.29,2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 304.0
YYD3_k127_5822681_4 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822,K00833 - 2.6.1.18,2.6.1.62 0.00000000000000000000000000000000000000000000000000000000000000000000009346 246.0
YYD3_k127_5822681_5 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.000000000000000000000000000000000000000000000000000000000000000000006337 239.0
YYD3_k127_5822681_6 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.0000000000000000000000000000000000000000000005205 175.0
YYD3_k127_5822681_7 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000001495 126.0
YYD3_k127_5857479_0 peptidase activity K01266 - 3.4.11.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 404.0
YYD3_k127_5857479_1 Carbohydrate ABC transporter substrate-binding protein, CUT1 family K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 370.0
YYD3_k127_5857479_2 PFAM ABC transporter related K10112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 327.0
YYD3_k127_5857479_3 - - - - 0.00000000000000000000000000000000000000000002045 166.0
YYD3_k127_5857479_4 - - - - 0.00000000003137 71.0
YYD3_k127_5857479_5 domain protein K14194 - - 0.0000000825 66.0
YYD3_k127_5863258_1 RNA recognition motif - - - 0.0000000000000000832 83.0
YYD3_k127_5863258_2 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0000000000005601 75.0
YYD3_k127_5871029_0 His Kinase A (phosphoacceptor) domain K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005705 441.0
YYD3_k127_5871029_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 367.0
YYD3_k127_5871029_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003343 303.0
YYD3_k127_5871029_3 Peptidase family S41 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008934 297.0
YYD3_k127_5871029_4 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.000000000000000000000000000000000000000003172 162.0
YYD3_k127_5871029_5 multi-organism process K03195 - - 0.000000000000000000000000000000000001382 148.0
YYD3_k127_5871029_6 Sporulation and spore germination - - - 0.0000000000000000003402 98.0
YYD3_k127_5871029_7 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00002064 51.0
YYD3_k127_5875706_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 2.636e-281 882.0
YYD3_k127_5875706_1 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000265 200.0
YYD3_k127_5875706_2 endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000000000000000000000000189 147.0
YYD3_k127_5875706_3 PFAM RNA-directed DNA polymerase (Reverse transcriptase) K00986,K15342 - 2.7.7.49 0.00000000000000000000000000000000006938 136.0
YYD3_k127_5875841_0 GMC oxidoreductase K06151 - 1.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 455.0
YYD3_k127_5875841_1 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000008316 206.0
YYD3_k127_5875841_2 - - - - 0.000000000000000000000000000000000000000000000000000006075 207.0
YYD3_k127_5875841_3 COGs COG1670 Acetyltransferase including N-acetylase of ribosomal protein - - - 0.00000000000000000000000000000000000004751 149.0
YYD3_k127_5875841_4 Subtilase family K14645 - - 0.00000000000000000000000000000944 127.0
YYD3_k127_5875841_5 Putative restriction endonuclease - - - 0.000000000000000000000000005763 117.0
YYD3_k127_5875841_6 Gluconate 2-dehydrogenase subunit 3 K06152 - 1.1.99.3 0.000000000000000000008928 102.0
YYD3_k127_5875841_7 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) - - - 0.00000000000131 71.0
YYD3_k127_5888609_0 Serine hydrolase involved in the detoxification of formaldehyde - - - 1.427e-223 710.0
YYD3_k127_5888609_1 PFAM monooxygenase FAD-binding K20940 - 1.14.13.218 3.431e-199 629.0
YYD3_k127_5888609_2 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 481.0
YYD3_k127_5888609_3 Cys/Met metabolism PLP-dependent enzyme K10907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 413.0
YYD3_k127_5888609_4 esterase K07214 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 372.0
YYD3_k127_5888609_5 Stress responsive A/B Barrel Domain - - - 0.000000000000000000000000000006604 121.0
YYD3_k127_5888609_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000009139 119.0
YYD3_k127_5888609_7 - - - - 0.000000000009369 70.0
YYD3_k127_5888609_8 phospholipase Carboxylesterase - - - 0.0000008284 57.0
YYD3_k127_5892118_0 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K00261,K00262 - 1.4.1.3,1.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 418.0
YYD3_k127_5892118_1 carboxylic ester hydrolase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 338.0
YYD3_k127_5892118_2 Helix-hairpin-helix domain K04477 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 292.0
YYD3_k127_5892118_3 Phosphoribosyl transferase domain K07100 - - 0.0000000000000000000000000000000000000000000000000000000000003701 217.0
YYD3_k127_5892118_4 Di-iron-containing protein involved in the repair of iron-sulfur clusters - - - 0.00000000000000004215 87.0
YYD3_k127_5892118_5 Malic enzyme, NAD binding domain K00027,K00029 - 1.1.1.38,1.1.1.40 0.00000004684 57.0
YYD3_k127_5892118_6 YtxH-like protein - - - 0.0001531 49.0
YYD3_k127_5918528_0 Glutamate synthase central domain K00265,K00284 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016020,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0040007,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.13,1.4.1.14,1.4.7.1 0.0 1755.0
YYD3_k127_5918528_1 Phosphate acyltransferases K01897 - 6.2.1.3 3.063e-266 844.0
YYD3_k127_5918528_2 COG0583 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000508 253.0
YYD3_k127_5918528_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000005041 130.0
YYD3_k127_5921943_0 Metal-dependent hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001661 259.0
YYD3_k127_5921943_1 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000004536 123.0
YYD3_k127_5930776_0 PFAM Beta-lactamase K18988 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 441.0
YYD3_k127_5930776_1 Predicted membrane protein (DUF2306) - - - 0.0000000000000000000000000000000008769 139.0
YYD3_k127_5930776_2 DNA-sulfur modification-associated - - - 0.00000008171 64.0
YYD3_k127_5935634_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1180.0
YYD3_k127_5935634_1 photosynthesis - - - 0.0000000000000000000000000000000000000000000000000000001197 200.0
YYD3_k127_5935634_2 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000000000000000001793 191.0
YYD3_k127_5935634_3 YcxB-like protein - - - 0.00000000000000000000000253 108.0
YYD3_k127_5951074_0 Uncharacterised protein family (UPF0182) K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 4.794e-247 792.0
YYD3_k127_5951074_1 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000001484 155.0
YYD3_k127_5951074_2 methyltransferase activity - - - 0.00000000000000000000003275 102.0
YYD3_k127_5951074_3 - - - - 0.00001441 56.0
YYD3_k127_5954343_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000003427 169.0
YYD3_k127_5954343_1 CARDB - - - 0.000000000000000000000000000000000007547 154.0
YYD3_k127_5954343_2 aggregation factor core protein MAFp3, isoform C - - - 0.0000000000000000000001138 113.0
YYD3_k127_5954343_3 - - - - 0.0000000000000000003847 98.0
YYD3_k127_5954343_4 - - - - 0.000000000000001904 81.0
YYD3_k127_5954343_5 - - - - 0.00000000000000434 87.0
YYD3_k127_5954343_6 - - - - 0.00000000000001152 81.0
YYD3_k127_5954343_7 cellulase activity K01183,K01728 - 3.2.1.14,4.2.2.2 0.0000002704 62.0
YYD3_k127_5954380_0 PQQ-like domain - - - 6.081e-224 710.0
YYD3_k127_5954380_1 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000002669 235.0
YYD3_k127_596271_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 553.0
YYD3_k127_596271_1 lyase activity K11645 GO:0003674,GO:0003824,GO:0004332,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016829,GO:0016830,GO:0016832,GO:0042802,GO:0044424,GO:0044444,GO:0044464 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 549.0
YYD3_k127_596271_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003482 435.0
YYD3_k127_596271_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 329.0
YYD3_k127_596271_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002811 254.0
YYD3_k127_596271_5 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000002297 192.0
YYD3_k127_596271_6 Protein of unknown function (DUF2905) - - - 0.00000000000000009904 81.0
YYD3_k127_596271_7 helicase activity - - - 0.00000005583 59.0
YYD3_k127_596271_8 Putative prokaryotic signal transducing protein - - - 0.0000168 51.0
YYD3_k127_596458_0 ATPases associated with a variety of cellular activities K10441 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003599 469.0
YYD3_k127_596458_1 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000332 321.0
YYD3_k127_596458_2 DNA topological change - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000331 257.0
YYD3_k127_596458_3 Ankyrin repeats (many copies) - - - 0.0000000000000000000000000000000000000000000000000000000008339 224.0
YYD3_k127_596458_5 Belongs to the binding-protein-dependent transport system permease family K10440 - - 0.0000000000000000000000000000005019 126.0
YYD3_k127_5966847_0 Arginosuccinate synthase K01940 - 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 514.0
YYD3_k127_5966847_1 argininosuccinate lyase K01755,K14681 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,4.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007359 399.0
YYD3_k127_5966847_10 Regulates arginine biosynthesis genes K03402 - - 0.000000000000000000000002368 107.0
YYD3_k127_5966847_11 - - - - 0.0000000000000000000001364 102.0
YYD3_k127_5966847_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000232 267.0
YYD3_k127_5966847_3 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003342 250.0
YYD3_k127_5966847_4 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000003673 228.0
YYD3_k127_5966847_5 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000001894 225.0
YYD3_k127_5966847_6 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000005535 171.0
YYD3_k127_5966847_7 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000002838 146.0
YYD3_k127_5966847_8 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000000000007491 140.0
YYD3_k127_5966847_9 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000003806 134.0
YYD3_k127_5973186_0 DNA topological change K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007051 426.0
YYD3_k127_5973186_1 Protein of unknown function (DUF1552) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 368.0
YYD3_k127_5973186_2 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097510,GO:0140097,GO:1901360 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000655 310.0
YYD3_k127_5973186_3 Ankyrin repeats (many copies) - - - 0.0000000000000000000000000000000000000000001654 177.0
YYD3_k127_5973186_4 Peptidase M48 K03799 - - 0.0006611 48.0
YYD3_k127_5987122_0 Radical SAM - - - 1.316e-295 922.0
YYD3_k127_5987122_1 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 9.219e-288 893.0
YYD3_k127_5987122_10 Uncharacterized conserved protein (DUF2203) - - - 0.000000000000000000000000008709 118.0
YYD3_k127_5987122_11 Pfam:DUF59 - - - 0.000000000000000000000002577 109.0
YYD3_k127_5987122_12 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950,K13940 - 2.7.6.3,4.1.2.25 0.000000000005249 72.0
YYD3_k127_5987122_13 - - - - 0.00003046 49.0
YYD3_k127_5987122_2 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000264 506.0
YYD3_k127_5987122_3 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 417.0
YYD3_k127_5987122_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 332.0
YYD3_k127_5987122_5 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000007372 239.0
YYD3_k127_5987122_6 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000002675 177.0
YYD3_k127_5987122_7 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000001763 160.0
YYD3_k127_5987122_8 BON domain - - - 0.00000000000000000000000000000000000383 144.0
YYD3_k127_5987122_9 Belongs to the HesB IscA family - - - 0.0000000000000000000000000000000001297 136.0
YYD3_k127_6003748_0 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 3.817e-259 811.0
YYD3_k127_6003748_1 Iron-regulated membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 414.0
YYD3_k127_6003748_2 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 394.0
YYD3_k127_6003748_3 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 353.0
YYD3_k127_6003748_4 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008896 252.0
YYD3_k127_6003748_5 Planctomycete cytochrome C - - - 0.0000000000000000002137 94.0
YYD3_k127_6033637_0 Glycosyltransferase, group 2 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 456.0
YYD3_k127_6033637_1 SpoIID LytB domain protein K06381 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 402.0
YYD3_k127_6033637_2 Domain of unknown function (DUF4922) - - - 0.000000000000000000000000000000000000000000000000000001843 207.0
YYD3_k127_6036350_0 TonB-dependent receptor - - - 0.0 1077.0
YYD3_k127_6036350_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005969 405.0
YYD3_k127_6036350_2 COG0492 Thioredoxin reductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 317.0
YYD3_k127_6036350_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000002812 229.0
YYD3_k127_6036350_4 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000001363 100.0
YYD3_k127_6044047_0 ABC transporter - - - 1.381e-290 898.0
YYD3_k127_6044047_1 Alkylated DNA repair protein K03919 - 1.14.11.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 286.0
YYD3_k127_6044047_2 Hypothetical methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001198 251.0
YYD3_k127_6044047_3 MarR family - - - 0.00000000000000000000000000000000000000000000000000000000001676 212.0
YYD3_k127_6048024_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.051e-278 878.0
YYD3_k127_6048024_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 6.721e-235 732.0
YYD3_k127_6048024_2 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000891 569.0
YYD3_k127_6048024_3 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009408 536.0
YYD3_k127_6048024_4 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 302.0
YYD3_k127_6048024_5 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002184 289.0
YYD3_k127_6048024_6 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000915 198.0
YYD3_k127_6049680_0 Aminomethyltransferase folate-binding domain K15066 - 2.1.1.341 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 583.0
YYD3_k127_6049680_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001912 267.0
YYD3_k127_6049680_2 - - - - 0.000000000000000000000000000000000000000000000000000000001733 216.0
YYD3_k127_6049680_3 phosphoprotein phosphatase activity - - - 0.0000000000000000000000000000000000000000000000000000008885 209.0
YYD3_k127_6049680_4 phosphoprotein phosphatase activity K14680 - 6.5.1.3 0.00000000000000000000000000000000000000001269 164.0
YYD3_k127_6049680_5 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000006554 121.0
YYD3_k127_6049680_6 - - - - 0.0000000000000000000000000005123 126.0
YYD3_k127_6049680_8 Carboxypeptidase regulatory-like domain - - - 0.000000001964 62.0
YYD3_k127_6068241_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 6.181e-212 674.0
YYD3_k127_6068241_1 alkylbase DNA N-glycosylase activity K03652 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000001431 235.0
YYD3_k127_6068241_2 to the N-terminal domain of Lon protease' K01338 - 3.4.21.53 0.000000000000000000000000000000003617 136.0
YYD3_k127_6068241_4 YtxH-like protein - - - 0.00000000000000041 83.0
YYD3_k127_6068241_5 ErfK YbiS YcfS YnhG family protein K21470 - - 0.0000000005179 67.0
YYD3_k127_6077595_0 Dehydrogenase K00117 - 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 532.0
YYD3_k127_6077595_1 and related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 437.0
YYD3_k127_6077595_2 Cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001894 258.0
YYD3_k127_6077595_3 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000000000000000000423 176.0
YYD3_k127_6077595_4 cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000006721 151.0
YYD3_k127_6077595_5 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0022900,GO:0022904,GO:0034220,GO:0044237,GO:0044464,GO:0045333,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600 1.9.3.1 0.0000000000000000000000000001883 117.0
YYD3_k127_6077595_7 - - - - 0.00000000006319 66.0
YYD3_k127_6077595_8 Prokaryotic Cytochrome C oxidase subunit IV - - - 0.0002876 48.0
YYD3_k127_6105612_0 FAD binding domain K00481 - 1.14.13.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009799 507.0
YYD3_k127_6105612_1 Tannase and feruloyl esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004228 454.0
YYD3_k127_6105612_2 PFAM alpha beta hydrolase fold K01561 - 3.8.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007484 296.0
YYD3_k127_6105612_3 Dioxygenase - - - 0.0000000000000000000000000000000000000000000000002036 192.0
YYD3_k127_6105612_4 FCD - - - 0.000000000000000000001365 103.0
YYD3_k127_6105612_5 RNA pseudouridylate synthase - - - 0.00000000000001974 79.0
YYD3_k127_6109437_0 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 475.0
YYD3_k127_6109437_1 Transcriptional regulatory protein, C terminal K02483,K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 385.0
YYD3_k127_6109437_2 TonB dependent receptor - - - 0.00006465 48.0
YYD3_k127_6111011_0 efflux transmembrane transporter activity - - - 8.365e-211 686.0
YYD3_k127_6111011_1 G8 - - - 0.000000000000000000000000000000000000002818 153.0
YYD3_k127_6111011_2 PFAM Transcriptional regulator - - - 0.000000000000000000000000000008758 121.0
YYD3_k127_6111011_3 - - - - 0.00008068 48.0
YYD3_k127_6140323_0 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000002208 226.0
YYD3_k127_6140323_1 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000000000000000000000000000000001874 144.0
YYD3_k127_6140323_2 PFAM Spore coat protein CotH - - - 0.000000000000000000445 100.0
YYD3_k127_6140323_3 PFAM acylphosphatase K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.000000000000001103 79.0
YYD3_k127_6145160_0 Domain of unknown function (DUF4139) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001216 262.0
YYD3_k127_6145160_1 Domain of unknown function (DUF4126) - - - 0.00000000000000000000000000000000000000000000324 170.0
YYD3_k127_6145160_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00008195 55.0
YYD3_k127_6155853_0 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 555.0
YYD3_k127_6155853_1 Dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005937 562.0
YYD3_k127_6155853_2 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 542.0
YYD3_k127_6155853_3 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 485.0
YYD3_k127_6155853_4 Trehalose utilisation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 410.0
YYD3_k127_6155853_5 Protein involved in outer membrane biogenesis K07289,K07290 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0032386,GO:0032879,GO:0032880,GO:0033157,GO:0044464,GO:0050789,GO:0051049,GO:0051223,GO:0060341,GO:0065007,GO:0070201,GO:0071944,GO:0090087,GO:0090313,GO:1903533,GO:1903827,GO:1905475 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 385.0
YYD3_k127_6155853_6 PFAM phosphoesterase, RecJ domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 343.0
YYD3_k127_6155853_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004784 296.0
YYD3_k127_6155853_8 Response regulator receiver - - - 0.0007516 52.0
YYD3_k127_6163000_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 3.079e-201 642.0
YYD3_k127_6163000_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006092 423.0
YYD3_k127_6163000_2 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 343.0
YYD3_k127_6163000_3 PFAM Glutamine cyclotransferase K00683 - 2.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004341 298.0
YYD3_k127_6163000_4 - - - - 0.00000000000000000005004 92.0
YYD3_k127_6180057_0 histidine kinase HAMP region domain protein K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 339.0
YYD3_k127_6180057_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009342 284.0
YYD3_k127_6180057_2 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000000000000000000000000000000000000000000000000000000004805 235.0
YYD3_k127_6180057_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000000282 98.0
YYD3_k127_6180057_4 Putative esterase - - - 0.000000000002469 73.0
YYD3_k127_6180057_5 Putative esterase - - - 0.0000000001939 67.0
YYD3_k127_6180063_0 PQQ-like domain K00114 - 1.1.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000065 374.0
YYD3_k127_6180063_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.0000000000000000000000000000000000000000003253 174.0
YYD3_k127_6180063_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000002443 150.0
YYD3_k127_6180063_3 domain protein - - - 0.000000000000000000000000000000000001884 157.0
YYD3_k127_6180063_4 BON domain - - - 0.000000000000000000000000000001305 130.0
YYD3_k127_6180063_5 PFAM SNARE associated Golgi protein - - - 0.0000000000001601 78.0
YYD3_k127_6199522_0 Histidine-specific methyltransferase, SAM-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324 329.0
YYD3_k127_6199522_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004065 311.0
YYD3_k127_6199522_2 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000009781 225.0
YYD3_k127_6203315_0 Catalytic LigB subunit of aromatic ring-opening dioxygenase K04101 - 1.13.11.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003051 407.0
YYD3_k127_6203315_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 396.0
YYD3_k127_6203315_10 - - - - 0.00000000000009653 82.0
YYD3_k127_6203315_11 ABC transporter K06861 - - 0.000000000008746 65.0
YYD3_k127_6203315_2 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000003333 179.0
YYD3_k127_6203315_3 Aromatic-ring-opening dioxygenase LigAB, LigA subunit - - - 0.000000000000000000000000000000000000000002987 160.0
YYD3_k127_6203315_4 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000003542 152.0
YYD3_k127_6203315_5 - - - - 0.0000000000000000000000000000000001905 152.0
YYD3_k127_6203315_6 nuclear chromosome segregation - - - 0.00000000000000000000000000000001789 142.0
YYD3_k127_6203315_7 - - - - 0.0000000000000000007851 94.0
YYD3_k127_6203315_8 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000004563 88.0
YYD3_k127_6203315_9 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000001958 88.0
YYD3_k127_6208161_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0 1407.0
YYD3_k127_6208161_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000005506 141.0
YYD3_k127_6208161_2 Diadenylate cyclase - - - 0.000000000000000000000000000007203 127.0
YYD3_k127_6208161_3 - - - - 0.0000000000000003369 87.0
YYD3_k127_6220954_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0 1058.0
YYD3_k127_6220954_1 DNA ligase K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.00000000000000000000000000000000000001253 151.0
YYD3_k127_6220954_2 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0000000000000000000000000172 119.0
YYD3_k127_6220954_4 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.000006032 54.0
YYD3_k127_6223560_0 AAA ATPase K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 548.0
YYD3_k127_6223560_1 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 522.0
YYD3_k127_6223560_10 DUF218 domain - - - 0.000000000000000000000000000000004287 135.0
YYD3_k127_6223560_11 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000000000008539 124.0
YYD3_k127_6223560_2 extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009345 449.0
YYD3_k127_6223560_3 Amidohydrolase K10220 - 4.2.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 411.0
YYD3_k127_6223560_4 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006882 412.0
YYD3_k127_6223560_5 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003456 332.0
YYD3_k127_6223560_6 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 330.0
YYD3_k127_6223560_7 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005207 281.0
YYD3_k127_6223560_8 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 2.7.7.87 0.000000000000000000000000000000000000000000000005963 180.0
YYD3_k127_6223560_9 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.0000000000000000000000000000000000000000007153 168.0
YYD3_k127_6229578_0 cation diffusion facilitator family transporter K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001147 267.0
YYD3_k127_6229578_1 E-Z type HEAT repeats K00239 - 1.3.5.1,1.3.5.4 0.0001961 53.0
YYD3_k127_6269615_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000005439 195.0
YYD3_k127_6269615_1 domain protein - - - 0.0000000000001371 79.0
YYD3_k127_6269615_2 Planctomycete cytochrome C - - - 0.0003898 47.0
YYD3_k127_6283818_0 amino acid - - - 7.113e-237 749.0
YYD3_k127_6283818_1 GDSL-like Lipase/Acylhydrolase - - - 0.0000000000000000000000000000000000000000000000000000000001415 209.0
YYD3_k127_6295422_0 PFAM Glycoside hydrolase 15-related K01178 - 3.2.1.3 0.0 1009.0
YYD3_k127_6295422_1 Carboxypeptidase regulatory-like domain - - - 2.518e-208 698.0
YYD3_k127_6295422_2 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005321 440.0
YYD3_k127_6295422_3 metal-binding protein - - - 0.0000000000000000000000000000000000000000000002872 171.0
YYD3_k127_6295422_4 YjbR - - - 0.0000000000000000000000000000000000001991 145.0
YYD3_k127_6297001_0 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 4.988e-268 842.0
YYD3_k127_6297001_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.183e-208 664.0
YYD3_k127_6297001_2 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 330.0
YYD3_k127_6297001_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000007225 203.0
YYD3_k127_6297001_4 - - - - 0.0000000000000000000000000000007551 123.0
YYD3_k127_6297001_5 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000002649 99.0
YYD3_k127_6297001_6 - - - - 0.00000000000000001548 85.0
YYD3_k127_6297001_7 4 iron, 4 sulfur cluster binding - - - 0.00000000000001811 75.0
YYD3_k127_6297001_8 Protein of unknown function (DUF2933) - - - 0.000000000003081 69.0
YYD3_k127_6297001_9 ATP-dependent DNA helicase RecQ K03654 GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 3.6.4.12 0.000001136 53.0
YYD3_k127_6310012_0 Belongs to the argininosuccinate synthase family. Type 2 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 2.942e-248 771.0
YYD3_k127_6310012_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 316.0
YYD3_k127_6310012_2 Mo-molybdopterin cofactor metabolic process K03753,K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009782 267.0
YYD3_k127_6310012_3 PFAM transferase hexapeptide repeat containing protein K00966 - 2.7.7.13 0.0000000000000000000000000000000000000000000000000000000000000000000000006599 252.0
YYD3_k127_6310012_4 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000000002833 188.0
YYD3_k127_6310012_5 von Willebrand factor, type A - - - 0.00000000000000000000000456 113.0
YYD3_k127_6310012_6 chaperone-mediated protein folding - - - 0.000000000000006422 85.0
YYD3_k127_6310012_7 Peptidoglycan-binding LysM - - - 0.0000000000004675 81.0
YYD3_k127_631968_0 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005682 299.0
YYD3_k127_631968_1 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001638 272.0
YYD3_k127_631968_2 Transposase IS200 like K07491 - - 0.000000000000000000000000000000000000000000000000000982 192.0
YYD3_k127_631968_3 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000001629 143.0
YYD3_k127_631968_4 Preprotein translocase SecG subunit K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000000000000002833 90.0
YYD3_k127_6332191_0 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928,K15792 - 6.3.2.10,6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 440.0
YYD3_k127_6332191_1 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007418 444.0
YYD3_k127_6332191_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000463 336.0
YYD3_k127_6332191_3 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000009427 222.0
YYD3_k127_6332191_4 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000003832 69.0
YYD3_k127_6332191_5 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic - - - 0.000000492 59.0
YYD3_k127_6335409_0 Type IV secretion-system coupling protein DNA-binding domain K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006756 396.0
YYD3_k127_6335409_1 zinc-ribbon domain - - - 0.0000000000000000009074 94.0
YYD3_k127_6348967_0 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 585.0
YYD3_k127_6348967_1 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000001104 241.0
YYD3_k127_6348967_2 Antibiotic biosynthesis monooxygenase K11530 - 5.3.1.32 0.00000000000000272 81.0
YYD3_k127_6356702_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 402.0
YYD3_k127_6356702_1 Heme iron utilization protein K07226 - - 0.000000000000000000000000000000000000000000000000000000001761 207.0
YYD3_k127_6356702_2 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000008038 164.0
YYD3_k127_6356702_3 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor domain - - - 0.000000000000000000000000000000000000001104 171.0
YYD3_k127_6356702_5 peroxiredoxin activity - - - 0.0000000000000000002404 98.0
YYD3_k127_6356702_6 Sulfatase K01130 - 3.1.6.1 0.0000663 50.0
YYD3_k127_6360331_0 Amidase - - - 1.01e-237 757.0
YYD3_k127_6360331_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 434.0
YYD3_k127_6360331_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008614 373.0
YYD3_k127_6360331_3 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000007213 240.0
YYD3_k127_6360331_4 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides K08281 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006208,GO:0006212,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0017144,GO:0019860,GO:0034641,GO:0042737,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 3.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000001874 231.0
YYD3_k127_6360331_5 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000003081 207.0
YYD3_k127_6360331_6 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000003148 211.0
YYD3_k127_6360331_7 - - - - 0.0000000000000000005266 93.0
YYD3_k127_6365738_0 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 317.0
YYD3_k127_6365738_1 PFAM ABC transporter K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 315.0
YYD3_k127_6365738_10 HlyD membrane-fusion protein of T1SS K01993 - - 0.000006607 51.0
YYD3_k127_6365738_2 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 301.0
YYD3_k127_6365738_3 PFAM ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009103 292.0
YYD3_k127_6365738_4 Protein of unknown function (DUF2400) K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000003355 260.0
YYD3_k127_6365738_5 Fumarylacetoacetate (FAA) hydrolase K01826 - 5.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000002542 249.0
YYD3_k127_6365738_6 Barrel-sandwich domain of CusB or HlyD membrane-fusion K01993 - - 0.00000000000000000000000000000000000000000000000000003867 199.0
YYD3_k127_6365738_7 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000005399 177.0
YYD3_k127_6365738_8 SnoaL-like domain - - - 0.0000000000000000000000002472 109.0
YYD3_k127_6365738_9 PFAM FRG domain - - - 0.000000000008741 69.0
YYD3_k127_6366927_0 cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000647 303.0
YYD3_k127_6366927_1 PFAM Carbohydrate-selective porin OprB - - - 0.000000000000000000000000000004156 137.0
YYD3_k127_6366927_2 40-residue YVTN family beta-propeller repeat - - - 0.000000000000000000007404 106.0
YYD3_k127_6366927_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000000009916 68.0
YYD3_k127_6374032_0 PFAM type II secretion system protein E K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 549.0
YYD3_k127_6374032_1 Belongs to the Dps family K04047 - - 0.00000000000000000000000000000000000000000003622 168.0
YYD3_k127_6374032_2 PFAM type II secretion system protein E K02669 - - 0.00000000000000000000000000000000006985 142.0
YYD3_k127_6374032_3 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000127 96.0
YYD3_k127_6374032_4 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000005302 87.0
YYD3_k127_6400104_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009307 536.0
YYD3_k127_6400104_1 Lipopolysaccharide-assembly - - - 0.00000000000000000005722 96.0
YYD3_k127_6400104_2 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000006732 80.0
YYD3_k127_6400104_3 Modulates RecA activity K03565 - - 0.00000009213 59.0
YYD3_k127_6400104_4 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000004771 55.0
YYD3_k127_6400104_5 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000007591 61.0
YYD3_k127_6400104_6 PFAM PhoH family protein K06217 - - 0.000003141 53.0
YYD3_k127_6406163_0 TonB dependent receptor - - - 7.99e-204 656.0
YYD3_k127_6406163_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007645 553.0
YYD3_k127_6406163_2 Hypothetical methyltransferase K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007406 405.0
YYD3_k127_6406163_3 Low molecular weight phosphatase family K03741 - 1.20.4.1 0.0000000000000000000000000000000000000000000001528 171.0
YYD3_k127_6406163_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000000000008423 156.0
YYD3_k127_6406163_5 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000008844 169.0
YYD3_k127_6419252_0 dna ligase - - - 3.547e-195 613.0
YYD3_k127_6419252_1 Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double- stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA K04799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009515 315.0
YYD3_k127_6419252_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001495 273.0
YYD3_k127_6419252_3 - - - - 0.000000000000000000000000000002609 124.0
YYD3_k127_6419252_4 PFAM SNARE associated Golgi protein - - - 0.000000000000001358 83.0
YYD3_k127_6419252_5 Bacterial extracellular solute-binding protein - - - 0.00007814 47.0
YYD3_k127_6422210_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009717 431.0
YYD3_k127_6422210_1 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005533 424.0
YYD3_k127_6422210_2 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 306.0
YYD3_k127_6422210_3 Transglycosylase associated protein - - - 0.00000000000000000000000000003528 119.0
YYD3_k127_6434889_0 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 541.0
YYD3_k127_6434889_1 alginic acid biosynthetic process K01729 - 4.2.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008888 541.0
YYD3_k127_6434889_2 Protein of unknown function (DUF1587) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 497.0
YYD3_k127_6434889_3 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 476.0
YYD3_k127_6434889_4 phenylacetate-CoA ligase activity - - - 0.0000000000000000000000000000000000000000000000000001208 191.0
YYD3_k127_6434889_5 - - - - 0.0000000000000000000000002242 119.0
YYD3_k127_645337_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.751e-306 979.0
YYD3_k127_645337_1 Formate--tetrahydrofolate ligase K01938 - 6.3.4.3 2.081e-232 728.0
YYD3_k127_645337_2 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000001827 180.0
YYD3_k127_645337_3 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.000000000000000000000000000000000000000001888 169.0
YYD3_k127_645337_4 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000009752 137.0
YYD3_k127_645337_6 RNA-binding S4 domain protein - - - 0.0000000000000000916 83.0
YYD3_k127_645337_7 negative regulation of transcription, DNA-templated - - - 0.0000000000000001366 85.0
YYD3_k127_6453710_0 ASPIC and UnbV - - - 2.575e-313 997.0
YYD3_k127_6453710_1 ASPIC and UnbV - - - 4.352e-227 715.0
YYD3_k127_6453710_2 Amidase K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000005014 221.0
YYD3_k127_6455594_0 Von Willebrand factor type A - - - 0.00000000000000000000000000000000000000000000000000000000005222 211.0
YYD3_k127_6455594_1 von Willebrand factor, type A - - - 0.0000000000000000000000000000000000000001377 170.0
YYD3_k127_6455594_2 Putative glutamine amidotransferase - - - 0.0000000000000000000000000000000000000002817 164.0
YYD3_k127_6456650_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 585.0
YYD3_k127_6456650_1 SMART phosphoesterase PHP domain protein - - - 0.00000000000000000004703 103.0
YYD3_k127_6456650_2 NlpC/P60 family K13695 - - 0.000000000000001351 83.0
YYD3_k127_6456650_3 Domain of Unknown Function (DUF350) K08989 - - 0.000007593 56.0
YYD3_k127_6460374_0 DNA polymerase LigD, ligase domain K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 508.0
YYD3_k127_6460374_1 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000745 230.0
YYD3_k127_6460374_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000003157 195.0
YYD3_k127_6460374_4 WD40 repeats - - - 0.0000003037 53.0
YYD3_k127_6460374_5 - - - - 0.000001181 53.0
YYD3_k127_6460374_6 Spermine/spermidine synthase domain - - - 0.000008385 50.0
YYD3_k127_6460374_7 Peptidase family M48 - - - 0.0003901 53.0
YYD3_k127_6470884_0 III protein, CoA-transferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004324 391.0
YYD3_k127_6470884_1 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000002354 247.0
YYD3_k127_6470884_2 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000152 167.0
YYD3_k127_6470884_3 - - - - 0.0000000000000000001325 90.0
YYD3_k127_6470884_4 transglycosylase - - - 0.00000004784 63.0
YYD3_k127_6522885_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008172 455.0
YYD3_k127_6522885_1 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000001173 204.0
YYD3_k127_6522885_2 PFAM Colicin V production K03558 - - 0.00000000000000000000008403 104.0
YYD3_k127_6522885_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000004451 106.0
YYD3_k127_6522885_4 PFAM Rieske 2Fe-2S domain K03886 - - 0.00000000000000000002159 97.0
YYD3_k127_6522885_5 PFAM acylphosphatase K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.0000000005974 62.0
YYD3_k127_6522885_6 Carboxymuconolactone decarboxylase family - - - 0.0000000006782 65.0
YYD3_k127_6522885_7 PFAM helix-turn-helix, Fis-type - - - 0.000000008711 59.0
YYD3_k127_652312_0 Surface antigen K07277,K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003142 583.0
YYD3_k127_652312_1 DJ-1/PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000000000000000000109 249.0
YYD3_k127_652312_2 Domain of unknown function (DUF4397) - - - 0.0000000000008676 78.0
YYD3_k127_6524572_0 BFD-like [2Fe-2S] binding domain K00362 - 1.7.1.15 0.0 1319.0
YYD3_k127_6524572_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006357 599.0
YYD3_k127_6524572_2 4 iron, 4 sulfur cluster binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 302.0
YYD3_k127_6524572_3 PFAM Rieske 2Fe-2S domain protein - - - 0.000000000000000000000000000000000000001017 154.0
YYD3_k127_6524572_4 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000002343 148.0
YYD3_k127_6524572_5 Rieske-like [2Fe-2S] domain - - - 0.0000000000000000000000000000000000009464 147.0
YYD3_k127_6524572_6 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000001493 108.0
YYD3_k127_6530663_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 2.72e-219 694.0
YYD3_k127_6530663_1 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 425.0
YYD3_k127_6530663_2 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147,K12573 - 3.1.13.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 407.0
YYD3_k127_6530663_3 Cadmium resistance transporter - - - 0.000000000000000000000000000000000000000000000000000006955 196.0
YYD3_k127_6530663_4 PAP2 superfamily - - - 0.000000000000000000000000000000000000004116 158.0
YYD3_k127_6530663_5 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520,K11177 - 1.17.1.4,1.2.5.3 0.00000397 49.0
YYD3_k127_6553888_0 Cytochrome C and Quinol oxidase polypeptide I K15408 - 1.9.3.1 5.958e-227 710.0
YYD3_k127_6553888_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000003799 256.0
YYD3_k127_6553888_2 Protein of unknown function (DUF421) - - - 0.0000000000000000000000000007666 115.0
YYD3_k127_6559562_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.535e-300 941.0
YYD3_k127_6559562_1 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 510.0
YYD3_k127_6559562_10 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.000000000000000000000000000000000000000000000000000000000007126 215.0
YYD3_k127_6559562_11 Glycine cleavage T-protein C-terminal barrel domain K00605,K06980 - 2.1.2.10 0.00000000000000000000000000000000000000000038 169.0
YYD3_k127_6559562_12 - - - - 0.000000000000000000000000000000764 141.0
YYD3_k127_6559562_13 Thioesterase superfamily K10806 - - 0.000000000000000000000000000001307 124.0
YYD3_k127_6559562_14 Major facilitator superfamily - - - 0.00000000000000000000000000003613 130.0
YYD3_k127_6559562_15 Belongs to the peptidase M24B family K01271 - 3.4.13.9 0.00000000000001169 82.0
YYD3_k127_6559562_2 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 441.0
YYD3_k127_6559562_3 Metallopeptidase family M24 K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 362.0
YYD3_k127_6559562_4 Domain present in PSD-95, Dlg, and ZO-1/2. K08070,K08372 - 1.3.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000032 293.0
YYD3_k127_6559562_5 heat shock protein DnaJ domain protein K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006323 279.0
YYD3_k127_6559562_6 May be involved in the transport of PQQ or its precursor to the periplasm K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004658 272.0
YYD3_k127_6559562_7 proline dipeptidase activity K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000008368 244.0
YYD3_k127_6559562_8 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000001693 239.0
YYD3_k127_6559562_9 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000437 220.0
YYD3_k127_658707_0 - - - - 0.000000000000000000000000000000000000000000000007807 183.0
YYD3_k127_658707_1 -acetyltransferase - - - 0.0000000000000000000082 100.0
YYD3_k127_658707_2 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000001189 66.0
YYD3_k127_6604150_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005881 382.0
YYD3_k127_6604150_1 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008974 370.0
YYD3_k127_6604150_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000002825 258.0
YYD3_k127_6604150_3 dCMP deaminase activity K01493 - 3.5.4.12 0.0000000000000000000000000000000000000000000000000000000003185 210.0
YYD3_k127_6606820_0 Sulfite reductase K00366,K00381,K00392 - 1.7.7.1,1.8.1.2,1.8.7.1 5.32e-291 911.0
YYD3_k127_6606820_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 339.0
YYD3_k127_6606820_2 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02303 - 2.1.1.107 0.00000000000000000000000000000000000000000000000000000000000000009482 229.0
YYD3_k127_6606820_3 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000001848 186.0
YYD3_k127_6606820_4 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.000000000000000000000000000000000000000000744 164.0
YYD3_k127_6606820_5 Pfam:Methyltransf_26 - - - 0.00000000000000000000000000000000003009 139.0
YYD3_k127_6606820_6 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.00000000000000000000000000000000339 139.0
YYD3_k127_6606820_7 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822,K00833 - 2.6.1.18,2.6.1.62 0.000000000000000000000125 101.0
YYD3_k127_6606820_8 - - - - 0.0000000000000000000001988 104.0
YYD3_k127_6607376_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000002078 289.0
YYD3_k127_6607376_1 Mycothiol maleylpyruvate isomerase N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000166 230.0
YYD3_k127_6607376_2 alpha beta K06889 - - 0.000000000000000000000000000000000002406 156.0
YYD3_k127_6607376_3 PFAM nuclear protein SET K07117 - - 0.000000000000004399 76.0
YYD3_k127_6613717_0 Dehydrogenase E1 component K00615 - 2.2.1.1 5.443e-293 919.0
YYD3_k127_6613717_1 Cysteine-rich domain K00113 - 1.1.5.3 4.36e-213 669.0
YYD3_k127_6613717_10 - - - - 0.00000000000000000000001347 113.0
YYD3_k127_6613717_11 - - - - 0.00000000000000626 81.0
YYD3_k127_6613717_12 COG0810 Periplasmic protein TonB, links inner and outer membranes K03832 - - 0.00002215 55.0
YYD3_k127_6613717_2 Trypsin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002203 402.0
YYD3_k127_6613717_3 LysR substrate binding domain K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006547 297.0
YYD3_k127_6613717_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 287.0
YYD3_k127_6613717_5 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001631 253.0
YYD3_k127_6613717_6 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000008287 232.0
YYD3_k127_6613717_7 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000002932 221.0
YYD3_k127_6613717_8 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000000000000000000000105 188.0
YYD3_k127_6613717_9 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000009332 171.0
YYD3_k127_6650819_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1056.0
YYD3_k127_6650819_1 radical SAM domain protein - - - 6.046e-236 743.0
YYD3_k127_6650819_2 beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 488.0
YYD3_k127_6650819_3 Belongs to the glutaminase family K01425 GO:0003674,GO:0003824,GO:0004359,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 3.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 468.0
YYD3_k127_6650819_4 PAP2 superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000971 344.0
YYD3_k127_6650819_5 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000007916 233.0
YYD3_k127_6650819_6 Putative zinc-binding metallo-peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000001956 217.0
YYD3_k127_6650819_7 von Willebrand factor, type A - - - 0.000000000000516 82.0
YYD3_k127_6673442_0 Gkycosyl transferase family 4 group - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000729 470.0
YYD3_k127_6673442_1 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000001149 100.0
YYD3_k127_6673442_2 Chaperone - - - 0.000000000000003073 85.0
YYD3_k127_6673442_3 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0022857,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0033036,GO:0033218,GO:0042277,GO:0042597,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043295,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0048037,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072341,GO:1900750,GO:1901681,GO:1904680 - 0.0000000011 59.0
YYD3_k127_6673442_5 TIGRFAM conserved repeat domain - - - 0.0003677 54.0
YYD3_k127_6685_0 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003957 271.0
YYD3_k127_6722886_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 8.272e-286 887.0
YYD3_k127_6722886_1 Penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 1.052e-229 733.0
YYD3_k127_6722886_10 Cytidine and deoxycytidylate deaminase zinc-binding region K01489 - 3.5.4.5 0.00000000000000000000000000000000000006892 146.0
YYD3_k127_6722886_11 BadF BadG BcrA BcrD - GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0006040,GO:0006044,GO:0006082,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0017076,GO:0019200,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0045127,GO:0046835,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901071,GO:1901135,GO:1901265,GO:1901363 - 0.00000000000000000000000000006018 127.0
YYD3_k127_6722886_12 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000597 110.0
YYD3_k127_6722886_13 Rhodanese Homology Domain - - - 0.0000000000000000000000446 103.0
YYD3_k127_6722886_14 subunit of a heme lyase K02200 - - 0.0000000000000000001107 95.0
YYD3_k127_6722886_15 Protein of unknown function with PCYCGC motif - - - 0.0000000000009558 73.0
YYD3_k127_6722886_16 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000001983 63.0
YYD3_k127_6722886_17 - - - - 0.0000000002045 68.0
YYD3_k127_6722886_2 PFAM Cytochrome c assembly protein K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 615.0
YYD3_k127_6722886_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001622 287.0
YYD3_k127_6722886_4 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000004089 264.0
YYD3_k127_6722886_6 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000009599 209.0
YYD3_k127_6722886_7 AAA domain, putative AbiEii toxin, Type IV TA system K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000000000000892 200.0
YYD3_k127_6722886_8 ABC-type transport system involved in cytochrome c biogenesis, permease component K02195 - - 0.00000000000000000000000000000000000000000000000000002081 198.0
YYD3_k127_6722886_9 PFAM cytochrome c-type biogenesis protein CcmB K02194 - - 0.0000000000000000000000000000000000000000000001735 176.0
YYD3_k127_6722969_0 PQQ-like domain - - - 1.62e-213 678.0
YYD3_k127_6722969_1 ABC-type Fe3 transport system permease component K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 569.0
YYD3_k127_6722969_2 Belongs to the DapA family K01714,K13876 - 4.2.1.43,4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 449.0
YYD3_k127_6722969_3 Bacterial extracellular solute-binding protein K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004948 362.0
YYD3_k127_6722969_4 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K11072 - 3.6.3.30,3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004211 343.0
YYD3_k127_6722969_5 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000001065 229.0
YYD3_k127_6722969_6 ASCH - - - 0.0000000000000000000000000000000000000000005047 158.0
YYD3_k127_6722969_7 Belongs to the ClpA ClpB family K03696 - - 0.00000000000000000000000000000000000000003019 162.0
YYD3_k127_6722969_8 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000007637 145.0
YYD3_k127_6722969_9 - - - - 0.00000000001368 70.0
YYD3_k127_674350_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 346.0
YYD3_k127_674350_1 PA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009246 302.0
YYD3_k127_674350_2 IstB-like ATP binding protein K02315,K04076 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000002939 226.0
YYD3_k127_674350_3 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000000000000000000000000000000001011 214.0
YYD3_k127_674350_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000005718 211.0
YYD3_k127_674350_5 MerR HTH family regulatory protein K13640 - - 0.000000000000000000000000000000000000006683 154.0
YYD3_k127_674350_6 4Fe-4S binding domain - - - 0.0000000000000000000001895 103.0
YYD3_k127_6750379_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0051301,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004777 391.0
YYD3_k127_6750379_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 387.0
YYD3_k127_6750379_2 POTRA domain, FtsQ-type K03589 - - 0.00000009199 63.0
YYD3_k127_6750379_3 Belongs to the MurCDEF family K01924 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.8 0.000158 45.0
YYD3_k127_6755083_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 6.645e-211 673.0
YYD3_k127_6755083_1 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 577.0
YYD3_k127_6755083_10 Protein of unknown function (DUF983) - - - 0.0000001184 60.0
YYD3_k127_6755083_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004877 402.0
YYD3_k127_6755083_3 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006205 377.0
YYD3_k127_6755083_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 350.0
YYD3_k127_6755083_5 SMART PAS domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005685 272.0
YYD3_k127_6755083_6 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000002279 226.0
YYD3_k127_6755083_7 TIGRFAM NADH-quinone oxidoreductase, E subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000004136 169.0
YYD3_k127_6755083_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000003096 128.0
YYD3_k127_6755083_9 plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000026 126.0
YYD3_k127_677477_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 379.0
YYD3_k127_677477_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002716 367.0
YYD3_k127_677477_2 Belongs to the SEDS family K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 339.0
YYD3_k127_677477_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 319.0
YYD3_k127_677477_4 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000001291 113.0
YYD3_k127_6787914_0 ThiF family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009792 486.0
YYD3_k127_6787914_1 Domain of unknown function (DUF374) K09778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 314.0
YYD3_k127_6787914_2 HAD-hyrolase-like - - - 0.000000000000000000000000000000000000000000005086 171.0
YYD3_k127_6787914_3 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000009654 145.0
YYD3_k127_6787914_4 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000608 137.0
YYD3_k127_6787914_5 PIN domain - - - 0.0000000000000000000000001015 111.0
YYD3_k127_6787914_6 Trypsin K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.0000000000000000002798 97.0
YYD3_k127_6812149_0 ABC transporter, transmembrane K18890 - - 2.537e-207 661.0
YYD3_k127_6812149_1 ABC transporter, transmembrane K18889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 556.0
YYD3_k127_6812149_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 438.0
YYD3_k127_6812149_3 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000002834 192.0
YYD3_k127_6812149_4 Belongs to the P(II) protein family K04751,K04752 - - 0.00000000000000000000000000000000000002161 147.0
YYD3_k127_6812149_5 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000001415 123.0
YYD3_k127_6817440_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000001668 236.0
YYD3_k127_6817440_1 3-phosphoshikimate 1-carboxyvinyltransferase activity K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000004556 218.0
YYD3_k127_6817440_2 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000001841 141.0
YYD3_k127_6817440_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00798 - 2.5.1.17 0.000000000000001303 86.0
YYD3_k127_6817440_4 PQQ-like domain K00117 - 1.1.5.2 0.000000004025 60.0
YYD3_k127_6825264_0 - - - - 0.000000000000000000000000000000001135 137.0
YYD3_k127_6825264_1 - - - - 0.0000000000000000000000007634 107.0
YYD3_k127_6825264_2 Belongs to the ompA family - - - 0.0000000000000000000000034 114.0
YYD3_k127_6880102_0 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835,K01840 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009978 426.0
YYD3_k127_6880102_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 312.0
YYD3_k127_6880102_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000009982 162.0
YYD3_k127_6880102_3 AntiSigma factor - - - 0.00000000000000000001801 101.0
YYD3_k127_6880102_4 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K00966,K16881 - 2.7.7.13,5.4.2.8 0.000000000000004571 80.0
YYD3_k127_703865_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006081 547.0
YYD3_k127_703865_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000002289 196.0
YYD3_k127_703865_2 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000003871 68.0
YYD3_k127_705390_0 Protein of unknown function (DUF1552) - - - 0.00000000000000000000000000000000000000000000000000000004861 198.0
YYD3_k127_705390_1 Cell wall assembly - - - 0.000000000000000156 91.0
YYD3_k127_707970_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 554.0
YYD3_k127_707970_1 enterobactin catabolic process K00700,K07214,K16147 - 2.4.1.18,2.4.99.16 0.0000000000000000000000000000000000000000000000000000000004683 216.0
YYD3_k127_710194_0 AcrB/AcrD/AcrF family - - - 1.136e-218 717.0
YYD3_k127_710194_1 protein conserved in bacteria K09790 - - 0.00000000000000001034 86.0
YYD3_k127_710194_2 YtkA-like - - - 0.0003717 49.0
YYD3_k127_725921_0 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000005314 79.0
YYD3_k127_736259_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000005144 268.0
YYD3_k127_739877_0 Serine hydrolase involved in the detoxification of formaldehyde - - - 3.78e-246 771.0
YYD3_k127_739877_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000006848 244.0
YYD3_k127_739877_2 ATPases associated with a variety of cellular activities K10441 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000007208 235.0
YYD3_k127_739877_3 Phospholipase - - - 0.0000000000000000000000000000000000000000000000007437 188.0
YYD3_k127_739877_4 DoxX - - - 0.000000000000000000000000000000007929 131.0
YYD3_k127_776353_0 RQC K03654 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 418.0
YYD3_k127_776353_1 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004215 271.0
YYD3_k127_776353_2 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000003337 117.0
YYD3_k127_786762_0 Belongs to the ClpA ClpB family K03696 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 487.0
YYD3_k127_786762_1 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001889 252.0
YYD3_k127_786762_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000005869 243.0
YYD3_k127_851095_0 MacB-like periplasmic core domain - - - 4.43e-284 895.0
YYD3_k127_851095_1 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 374.0
YYD3_k127_851095_2 TIGRFAM efflux transporter, RND family, MFP subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005414 377.0
YYD3_k127_851095_3 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 348.0
YYD3_k127_851095_4 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000002224 265.0
YYD3_k127_851095_5 RNA-DNA hybrid ribonuclease activity - - - 0.0000000000000000000000000001673 121.0
YYD3_k127_851095_6 Methylated dna-protein cysteine methyltransferase K07443 - - 0.000000000000000000000007162 105.0
YYD3_k127_851095_7 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.0000000000001834 81.0
YYD3_k127_852284_0 RNA polymerase sigma-54 factor K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009743 467.0
YYD3_k127_852284_1 acetaldehyde dehydrogenase (acetylating) K00132,K13922,K15515,K18119 - 1.2.1.10,1.2.1.76,1.2.1.81,1.2.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 387.0
YYD3_k127_852284_10 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.000000000000000005895 87.0
YYD3_k127_852284_11 - - - - 0.0000000000942 70.0
YYD3_k127_852284_12 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K09774 - - 0.00001458 58.0
YYD3_k127_852284_2 ABC transporter K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 327.0
YYD3_k127_852284_3 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003864 308.0
YYD3_k127_852284_4 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000423 289.0
YYD3_k127_852284_5 Calcineurin-like phosphoesterase K07098 - - 0.000000000000000000000000000000000000000000000000000006798 197.0
YYD3_k127_852284_6 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000002898 182.0
YYD3_k127_852284_7 membrane - - - 0.000000000000000000000002762 108.0
YYD3_k127_852284_8 - - - - 0.000000000000000000000008611 114.0
YYD3_k127_852284_9 - - - - 0.0000000000000000008397 99.0
YYD3_k127_858223_0 calcium- and calmodulin-responsive adenylate cyclase activity K01317,K01925,K01928,K01932 - 3.4.21.10,6.3.2.13,6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002889 659.0
YYD3_k127_866455_0 Transposase K02557,K07484,K13924,K21471 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003662 346.0
YYD3_k127_866455_1 Glycosyl transferases group 1 K07011 - - 0.00000000000000000000000000000000000006111 155.0
YYD3_k127_8821_0 reverse transcriptase K00986 - 2.7.7.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 559.0
YYD3_k127_8821_1 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007748 498.0
YYD3_k127_8821_2 ThiS family K03636 - - 0.0000000000000000000000000002368 117.0
YYD3_k127_88965_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000552 582.0
YYD3_k127_88965_1 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000005179 203.0
YYD3_k127_88965_2 PFAM blue (type 1) copper domain protein - - - 0.0000000000000000000000000000002585 131.0
YYD3_k127_88965_3 HD domain - - - 0.000000000000000000000136 112.0
YYD3_k127_892174_0 Dehydrogenase K17760,K21676 - 1.1.9.1,1.17.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 536.0
YYD3_k127_892174_1 Heat shock protein DnaJ domain protein - - - 0.000000000000000000000000000000000000000000003464 178.0
YYD3_k127_892174_2 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000004181 98.0
YYD3_k127_892174_3 - - - - 0.0000000000000000004265 94.0
YYD3_k127_892174_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000003241 85.0
YYD3_k127_900945_0 efflux transmembrane transporter activity K03296,K12340 - - 0.00000000000000000000000000000000000000000000000000000000001558 223.0
YYD3_k127_921202_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00003,K00982,K00990,K06950,K15371 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 1.1.1.3,1.4.1.2,2.7.7.42,2.7.7.59,2.7.7.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005323 578.0
YYD3_k127_921202_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 474.0
YYD3_k127_921202_2 [glutamate-ammonia-ligase] adenylyltransferase activity K00982 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 2.7.7.42,2.7.7.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 376.0
YYD3_k127_921202_3 extracellular solute-binding protein, family 1 K22003 - 5.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000008764 268.0
YYD3_k127_921202_4 DoxX-like family - - - 0.00000000000000000000000000000000000000001062 160.0
YYD3_k127_921202_5 YCII-related domain - - - 0.00000000000000000000000000000000008183 139.0
YYD3_k127_921202_6 - - - - 0.00000000000000000000000000000004579 136.0
YYD3_k127_921202_7 - - - - 0.0000000000000000000000000004656 118.0
YYD3_k127_932166_0 Tannase and feruloyl esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008901 494.0
YYD3_k127_932166_1 FAD binding domain K03391,K05712 - 1.14.13.127,1.14.13.50 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009636 327.0
YYD3_k127_932166_2 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000361 308.0
YYD3_k127_932166_3 Dual specificity phosphatase, catalytic domain - - - 0.0000000000000000000000000000000000000000003343 162.0
YYD3_k127_932166_4 Domain of unknown function (DUF4870) K09940 - - 0.000000000000000000000000000000000001648 141.0
YYD3_k127_932166_5 Histidine kinase - - - 0.000000000000000000000000000002044 122.0
YYD3_k127_932166_6 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000009998 93.0
YYD3_k127_93397_0 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003109 460.0
YYD3_k127_93397_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 462.0
YYD3_k127_93397_10 DNA-templated transcription, initiation K03088 - - 0.00000008868 62.0
YYD3_k127_93397_11 photosystem II stabilization K02237 - - 0.0000001925 59.0
YYD3_k127_93397_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009068 392.0
YYD3_k127_93397_3 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007026 295.0
YYD3_k127_93397_4 response regulator K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000001294 247.0
YYD3_k127_93397_5 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000006886 238.0
YYD3_k127_93397_6 NHL repeat - - - 0.000000000000000000000000000000000000000001022 173.0
YYD3_k127_93397_7 outer membrane autotransporter barrel domain protein - - - 0.0000000000000000000000000000000000005159 147.0
YYD3_k127_93397_8 Fe-S iron-sulfur cluster assembly protein, NifU family K04488 - - 0.0000000000000000000000000000000000009578 141.0
YYD3_k127_93397_9 von Willebrand factor, type A - - - 0.0000000000001737 79.0
YYD3_k127_934088_0 Sugar (and other) transporter - - - 2.411e-215 677.0
YYD3_k127_934088_1 Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway K08967 - 1.13.11.53,1.13.11.54 0.00000000000000000000000000000000000000000000000000000000000000000000005253 244.0
YYD3_k127_934088_2 tRNA processing K04075,K14058 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000002763 225.0
YYD3_k127_934088_3 Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) K08964 - 4.2.1.109 0.00000000000000000000000000000000000000000000000000000000001613 213.0
YYD3_k127_934088_4 Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene) K09880 - 3.1.3.77 0.0000000000000000000000000000000000000000000000000000000001331 211.0
YYD3_k127_934088_5 - - - - 0.0000000000000000000000000000000000000000000002045 175.0
YYD3_k127_934088_6 protein tyrosine phosphatase - - - 0.00000000000000000000000000000003639 133.0
YYD3_k127_934088_7 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000004536 123.0
YYD3_k127_934088_8 Domain of unknown function (DU1801) - - - 0.0000000000000000000000001871 109.0
YYD3_k127_959961_0 PFAM filamentation induced by cAMP protein Fic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 428.0
YYD3_k127_959961_1 TIGRFAM PQQ-dependent dehydrogenase, methanol ethanol family K00114 - 1.1.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 314.0
YYD3_k127_959961_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001177 266.0
YYD3_k127_959961_3 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000000000000000000004424 174.0
YYD3_k127_963982_0 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1108.0
YYD3_k127_963982_1 Myo-inositol-1-phosphate synthase, GAPDH domain protein K01858 - 5.5.1.4 1.165e-206 649.0
YYD3_k127_963982_10 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000006079 229.0
YYD3_k127_963982_11 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 5.3.1.6 0.0000000000000000000000000000000000000000000000000000000001208 214.0
YYD3_k127_963982_12 Regulatory protein, FmdB - - - 0.000000000000000000007138 95.0
YYD3_k127_963982_13 nitrite reductase K00363 - 1.7.1.15 0.0000000000000000004907 90.0
YYD3_k127_963982_14 HAD-superfamily hydrolase, subfamily IB, PSPase-like K01079 - 3.1.3.3 0.000000000000000003481 92.0
YYD3_k127_963982_15 - - - - 0.0000000000000474 75.0
YYD3_k127_963982_2 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 506.0
YYD3_k127_963982_3 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000381 419.0
YYD3_k127_963982_4 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008209 403.0
YYD3_k127_963982_5 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009641 326.0
YYD3_k127_963982_6 PFAM Integrase catalytic region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 315.0
YYD3_k127_963982_7 TIGRFAM GTP cyclohydrolase I K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003665 270.0
YYD3_k127_963982_8 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000001249 256.0
YYD3_k127_963982_9 fumarate reductase) cytochrome b subunit K00241 - - 0.00000000000000000000000000000000000000000000000000000000000000000001226 239.0
YYD3_k127_967210_0 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007081 468.0
YYD3_k127_967210_1 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000000000000005151 158.0
YYD3_k127_968278_0 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000003171 188.0
YYD3_k127_968278_1 DinB family - - - 0.0000000000000000000000000000000001371 138.0
YYD3_k127_968278_2 - - - - 0.00000000000000000000002066 105.0
YYD3_k127_968278_3 PIN domain K07065 - - 0.0000000000000000000004096 100.0
YYD3_k127_96937_0 class II (D K K01893 - 6.1.1.22 4.118e-197 624.0
YYD3_k127_96937_1 Arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 370.0
YYD3_k127_96937_2 L,D-transpeptidase catalytic domain K21470 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003149 302.0
YYD3_k127_96937_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000004621 156.0
YYD3_k127_96937_4 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000002101 119.0
YYD3_k127_977539_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005148 433.0
YYD3_k127_977539_1 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 385.0
YYD3_k127_977539_2 Peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000002022 106.0
YYD3_k127_998378_0 TIGRFAM Na H antiporter, bacterial form K03316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005923 253.0
YYD3_k127_998378_1 Uncharacterized protein conserved in bacteria (DUF2087) - - - 0.000000000000000000000000000000000000000000000000000000000000001714 224.0
YYD3_k127_998378_2 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000007405 166.0
YYD3_k127_998378_3 TonB dependent receptor - - - 0.0000003094 57.0
YYD3_k127_999732_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 4.607e-240 751.0
YYD3_k127_999732_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000382 241.0
YYD3_k127_999732_2 von Willebrand factor (vWF) type A domain K07114 - - 0.0000000000000000001108 95.0