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Overview

ID SMP0003
Name BYD3
Type paddy
Habitat soil
Country China
Latitude and longitude 38.974444 N 115.9892 E
Altitude (m) 8.0
Instrument illumina NovaSeq X Plus
AvgSpotLen (bp) 300
LibraryLayout PAIRED
Project PRJNA1430164
Collection Date 2022-09-25
Physicochemical properties
TN (g/kg) 1.5613
TP (g/kg) 0.9251
TS (g/kg) 0.5301
TC (g/kg) 21.1400
Fe (mg/kg) 35097.2477
Mn (mg/kg) 588.9908
C/N 13.5399
IC (g/kg) 8.7182
MBC (g/kg) 0.3302
pH 8.1400
Water content (%) 0.2900
NO3- (mg/kg) 4.2723
NH4+ (mg/kg) 3.1686

Location

Community profile
The microbial community profiled by MetaPhlAn4

MAGs46
The MAGs in SMP0003

ID Name Taxonomy Completeness Contamination GCN50Size
MAG00101 BYD3_bin.1 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__CADEED01;s__ 91.11 4.72 67.0 52,038 4,898,686
MAG00102 BYD3_bin.10 d__Bacteria;p__Acidobacteriota;c__Polarisedimenticolia;o__Polarisedimenticolales;f__DASUFT01;g__DASUFT01;s__ 94.54 1.94 71.0 19,729 4,321,479
MAG00103 BYD3_bin.12 d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Gp7-AA8;f__Gp7-AA8;g__JAENWF01;s__ 74.47 2.16 65.0 14,106 3,531,350
MAG00104 BYD3_bin.14 d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__;s__ 70.62 2.53 69.0 10,043 3,628,820
MAG00105 BYD3_bin.15 d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__12-FULL-67-14b;s__ 88.65 2.05 65.0 32,956 5,853,986
MAG00106 BYD3_bin.16 d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__SZUA-252;f__SZUA-252;g__WS-9;s__ 94.41 4.3 70.0 16,734 3,154,121
MAG00107 BYD3_bin.17 d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19;s__ZC4RG19 sp035708905 81.69 2.14 74.0 18,599 4,905,024
MAG00108 BYD3_bin.18 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga;s__Hydrogenophaga taeniospiralis 71.15 1.67 67.0 4,882 3,064,913
MAG00109 BYD3_bin.20 d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACDDX01;s__ 74.39 0.56 71.0 14,064 2,655,404
MAG00110 BYD3_bin.21 d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;f__JADJPG01;g__;s__ 64.23 0.19 62.0 7,193 4,873,566
MAG00111 BYD3_bin.23 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E tumuqii 79.01 2.36 64.0 2,380 3,187,301
MAG00112 BYD3_bin.25 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseolinea;s__Chryseolinea sp025923195 100.0 1.72 44.0 70,411 6,626,449
MAG00113 BYD3_bin.26 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Opimibacter;s__Opimibacter sp036503755 68.38 0.88 42.0 5,811 2,726,535
MAG00114 BYD3_bin.27 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAEUPI01;s__ 84.6 0.65 69.0 10,186 4,698,862
MAG00115 BYD3_bin.28 d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UBA9968;f__UBA9968;g__DP-20;s__ 74.26 3.32 57.0 29,336 3,645,087
MAG00116 BYD3_bin.29 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__VBAS01;s__VBAS01 sp025929635 73.11 1.09 41.0 13,888 3,611,718
MAG00117 BYD3_bin.30 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__SCGC-AG-212-J23;s__SCGC-AG-212-J23 sp025929745 87.5 2.45 66.0 15,304 3,151,564
MAG00118 BYD3_bin.31 d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ 83.25 5.57 56.0 16,929 4,503,548
MAG00119 BYD3_bin.32 d__Bacteria;p__Actinomycetota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__JAICNY01;s__JAICNY01 sp025930955 79.44 1.73 73.0 6,037 2,209,224
MAG00120 BYD3_bin.33 d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ 93.69 0.99 67.0 32,245 5,219,596
MAG00121 BYD3_bin.34 d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA2982;s__ 92.34 3.96 68.0 24,331 3,934,612
MAG00122 BYD3_bin.35 d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__SZUA-252;f__SZUA-252;g__WS-9;s__ 59.12 0.17 70.0 7,450 1,935,533
MAG00123 BYD3_bin.36 d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__UBA7656;f__UBA7656;g__DASTET01;s__DASTET01 sp035709445 93.9 2.41 58.0 5,470 5,398,610
MAG00124 BYD3_bin.37 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseolinea;s__ 77.75 4.81 45.0 8,521 5,462,157
MAG00125 BYD3_bin.38 d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__QHXN01;s__ 95.06 1.71 68.0 12,438 5,766,390
MAG00126 BYD3_bin.39 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__SCUD01;s__ 92.47 4.54 70.0 57,780 2,989,266
MAG00127 BYD3_bin.4 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__VBAS01;s__VBAS01 sp036374555 88.34 1.34 39.0 18,045 4,627,829
MAG00128 BYD3_bin.40 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA10428;g__UBA5072;s__ 78.05 1.68 42.0 12,233 2,983,223
MAG00129 BYD3_bin.41 d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteriia;o__WVZY01;f__JAKEHA01;g__JAKEHA01;s__ 63.86 0.11 66.0 12,693 2,137,822
MAG00130 BYD3_bin.45 d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__JAMHUH01;s__ 71.65 1.87 68.0 7,382 6,883,142
MAG00131 BYD3_bin.47 d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__12-FULL-67-14b;s__12-FULL-67-14b sp036380235 95.33 2.77 64.0 18,410 4,908,449
MAG00132 BYD3_bin.48 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__WYBJ01;g__;s__ 64.02 2.27 68.0 13,951 3,596,672
MAG00133 BYD3_bin.5 d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__JBBDWZ01;s__ 83.06 2.81 62.0 9,293 5,174,925
MAG00134 BYD3_bin.50 d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ 93.23 5.97 64.0 108,855 4,954,331
MAG00135 BYD3_bin.52 d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__RBC101;s__ 94.54 6.3 66.0 28,889 5,161,380
MAG00136 BYD3_bin.54 d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Thermomicrobiales;f__UBA6265;g__JACCXM01;s__ 88.1 4.63 65.0 26,931 5,020,857
MAG00137 BYD3_bin.55 d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__CADEEJ01;s__ 60.81 1.44 65.0 3,997 4,007,736
MAG00138 BYD3_bin.56 d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Bryobacteraceae;g__DASSSG01;s__ 88.54 6.66 63.0 21,831 7,602,973
MAG00139 BYD3_bin.58 d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JABWBJ01;s__ 84.23 3.67 66.0 17,174 4,627,510
MAG00140 BYD3_bin.59 d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__CAMLLJ01;s__CAMLLJ01 sp025928955 74.72 2.47 70.0 18,768 2,816,835
MAG00141 BYD3_bin.6 d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__OLB17;s__ 64.4 1.01 54.0 11,105 2,305,398
MAG00142 BYD3_bin.60 d__Bacteria;p__Acidobacteriota;c__UBA6911;o__RPQK01;f__RPQK01;g__RPQK01;s__ 72.44 1.56 59.0 6,457 6,388,364
MAG00143 BYD3_bin.61 d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__AR12;s__ 69.18 3.73 72.0 19,979 3,315,445
MAG00144 BYD3_bin.7 d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__JACCXV01;f__JACCXV01;g__DATBJZ01;s__ 82.27 0.38 74.0 15,273 2,555,391
MAG00145 BYD3_bin.8 d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__Gp6-AA40 sp035711805 77.99 1.65 66.0 23,818 5,168,307
MAG00146 BYD3_bin.9 d__Bacteria;p__ARS69;c__ARS69;o__ARS69;f__ARS69;g__;s__ 94.52 1.21 63.0 6,817 3,327,557
ID Name Taxonomy Completeness Contamination GCN50Size