GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0013 |
|---|---|
| Name | CSH1 |
| Type | lake |
| Habitat | sediment |
| Country | China |
| Latitude and longitude | 29.9192 N 107.2689 E |
| Altitude (m) | 358.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 0.8334 |
| TP (g/kg) | 0.3272 |
| TS (g/kg) | 0.8433 |
| TC (g/kg) | 8.5900 |
| Fe (mg/kg) | 19101.7964 |
| Mn (mg/kg) | 505.9880 |
| C/N | 10.3071 |
| IC (g/kg) | 1.4174 |
| MBC (g/kg) | 0.0375 |
| pH | 7.6800 |
| Water content (%) | 0.3941 |
| NO3- (mg/kg) | 1.7431 |
| NH4+ (mg/kg) | 20.3629 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs16
The MAGs in SMP0013
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG00586 | CSH1_bin.1 | d__Bacteria;p__Desulfobacterota;c__Desulfomonilia;o__UBA1062;f__UBA1062;g__MWEI01;s__MWEI01 sp025454155 | 85.27 | 3.97 | 59.0 | 4,582 | 2,473,212 |
| MAG00587 | CSH1_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__UBA6918;s__ | 66.63 | 2.17 | 64.0 | 18,740 | 1,605,056 |
| MAG00588 | CSH1_bin.11 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__VadinHA17;g__LD21;s__ | 92.54 | 2.82 | 44.0 | 8,850 | 2,980,388 |
| MAG00589 | CSH1_bin.13 | d__Bacteria;p__Desulfobacterota_G;c__Syntrophorhabdia;o__Syntrophorhabdales;f__Syntrophorhabdaceae;g__Syntrophorhabdus;s__ | 91.42 | 2.22 | 47.0 | 12,031 | 2,700,742 |
| MAG00590 | CSH1_bin.15 | d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__SYGM01;s__SYGM01 sp005799545 | 89.79 | 0.01 | 67.0 | 26,009 | 3,473,077 |
| MAG00591 | CSH1_bin.16 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__SZUA-254;g__;s__ | 61.47 | 1.05 | 48.0 | 3,708 | 1,663,679 |
| MAG00592 | CSH1_bin.19 | d__Archaea;p__Thermoproteota;c__Bathyarchaeia;o__Bathyarchaeales;f__Bathycorpusculaceae;g__Bathycorpusculum;s__ | 70.72 | 2.3 | 45.0 | 4,715 | 808,440 |
| MAG00593 | CSH1_bin.21 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Acidiferrobacterales;f__UBA6901;g__UBA6901;s__ | 61.52 | 0.57 | 67.0 | 13,803 | 1,934,713 |
| MAG00594 | CSH1_bin.23 | d__Archaea;p__Thermoplasmatota;c__E2;o__DHVEG-1;f__DHVEG-1;g__SM1-50;s__ | 90.97 | 1.44 | 45.0 | 18,320 | 1,997,926 |
| MAG00595 | CSH1_bin.26 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__RPQJ01;s__ | 75.59 | 1.68 | 68.0 | 15,985 | 2,833,009 |
| MAG00596 | CSH1_bin.27 | d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__UBA10834;f__UBA10834;g__COMBO-56-21;s__ | 93.79 | 4.79 | 60.0 | 36,118 | 2,059,582 |
| MAG00597 | CSH1_bin.28 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__Dissulfurispiraceae;g__JBAZFD01;s__ | 61.18 | 1.49 | 58.0 | 3,052 | 1,343,049 |
| MAG00598 | CSH1_bin.4 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;f__DSYF01;g__JALOTU01;s__JALOTU01 sp025457615 | 55.74 | 0.52 | 64.0 | 5,250 | 1,519,219 |
| MAG00599 | CSH1_bin.6 | d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA2174_A;g__SpSt-501;s__ | 96.2 | 3.54 | 60.0 | 20,976 | 3,300,290 |
| MAG00600 | CSH1_bin.7 | d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__UBA472;g__JAJRAN01;s__ | 60.35 | 0.65 | 57.0 | 3,598 | 1,138,652 |
| MAG00601 | CSH1_bin.8 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01;s__ | 73.79 | 1.83 | 68.0 | 8,283 | 2,080,787 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |