GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0043 |
|---|---|
| Name | HFD1 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 31.6475 N 117.743333 E |
| Altitude (m) | 6.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 2.3452 |
| TP (g/kg) | 0.6371 |
| TS (g/kg) | 0.1773 |
| TC (g/kg) | 25.7800 |
| Fe (mg/kg) | 24652.9851 |
| Mn (mg/kg) | 332.0896 |
| C/N | 10.9925 |
| IC (g/kg) | 2.0605 |
| MBC (g/kg) | 1.0259 |
| pH | 7.2000 |
| Water content (%) | 0.4431 |
| NO3- (mg/kg) | -6.9713 |
| NH4+ (mg/kg) | 5.4397 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs22
The MAGs in SMP0043
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG01607 | HFD1_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAOUJD01;s__ | 70.53 | 1.66 | 67.0 | 4,205 | 2,544,094 |
| MAG01608 | HFD1_bin.13 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__;s__ | 56.44 | 0.07 | 68.0 | 10,926 | 1,414,591 |
| MAG01609 | HFD1_bin.16 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Aquirhabdus;s__ | 100.0 | 0.23 | 45.0 | 38,016 | 2,894,779 |
| MAG01610 | HFD1_bin.17 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__JAWOLE01;s__ | 93.05 | 0.15 | 67.0 | 44,975 | 4,454,106 |
| MAG01611 | HFD1_bin.18 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__UBA7656;f__UBA7656;g__JADGNW01;s__ | 100.0 | 0.22 | 55.0 | 32,339 | 7,052,222 |
| MAG01612 | HFD1_bin.19 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DASTHG01;s__ | 60.51 | 1.6 | 70.0 | 2,858 | 3,184,778 |
| MAG01613 | HFD1_bin.20 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__SCN-69-37;g__DASUGC01;s__ | 84.54 | 2.99 | 68.0 | 10,683 | 2,930,407 |
| MAG01614 | HFD1_bin.21 | d__Bacteria;p__Desulfobacterota;c__BSN033;o__BSN033;f__UBA1163;g__UBA1163;s__ | 79.44 | 2.06 | 48.0 | 7,011 | 3,402,798 |
| MAG01615 | HFD1_bin.22 | d__Bacteria;p__Nitrospirota;c__UBA9217;o__UBA9217;f__UBA9217;g__JAAXXJ01;s__ | 78.0 | 4.22 | 56.0 | 75,688 | 2,340,333 |
| MAG01616 | HFD1_bin.24 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__ | 83.1 | 2.29 | 64.0 | 9,389 | 1,799,562 |
| MAG01617 | HFD1_bin.25 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__SZUA-252;f__SZUA-252;g__SZUA-252;s__SZUA-252 sp035716005 | 59.47 | 1.85 | 69.0 | 10,806 | 2,114,316 |
| MAG01618 | HFD1_bin.27 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__UBA11740;s__UBA11740 sp035469005 | 93.4 | 0.3 | 55.0 | 37,230 | 5,790,324 |
| MAG01619 | HFD1_bin.29 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__UBA6898;g__Sulfobium;s__ | 99.93 | 1.07 | 49.0 | 25,010 | 3,077,682 |
| MAG01620 | HFD1_bin.3 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_C;s__ | 80.1 | 5.24 | 57.0 | 15,363 | 2,956,001 |
| MAG01621 | HFD1_bin.30 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 87.67 | 2.96 | 56.0 | 16,848 | 4,760,645 |
| MAG01622 | HFD1_bin.32 | d__Bacteria;p__Nitrospirota;c__JACRHJ01;o__JACRHJ01;f__JACRHJ01;g__;s__ | 97.44 | 1.88 | 60.0 | 24,087 | 2,632,450 |
| MAG01623 | HFD1_bin.34 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Bryobacteraceae;g__DATGMB01;s__ | 70.78 | 4.0 | 66.0 | 11,745 | 6,121,007 |
| MAG01624 | HFD1_bin.37 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys;s__Pseudolabrys sp035310865 | 77.85 | 0.3 | 61.0 | 34,264 | 2,854,959 |
| MAG01625 | HFD1_bin.38 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Azotimanducaceae;g__DATJGR01;s__ | 75.82 | 2.64 | 64.0 | 4,646 | 3,395,991 |
| MAG01626 | HFD1_bin.4 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__AWTP1-9;s__ | 87.3 | 2.6 | 37.0 | 7,960 | 3,548,299 |
| MAG01627 | HFD1_bin.7 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__UBA6906;s__ | 93.17 | 5.39 | 62.0 | 24,836 | 4,853,039 |
| MAG01628 | HFD1_bin.8 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium;s__Aquabacterium sp918741295 | 77.72 | 3.41 | 64.0 | 4,590 | 3,444,049 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |