GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0048 |
|---|---|
| Name | HKD3 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 19.9 N 110.55 E |
| Altitude (m) | 25.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-27 |
| Physicochemical properties | |
| TN (g/kg) | 2.9551 |
| TP (g/kg) | 1.3759 |
| TS (g/kg) | 1.1416 |
| TC (g/kg) | 38.1700 |
| Fe (mg/kg) | 88429.1846 |
| Mn (mg/kg) | 842.2747 |
| C/N | 12.9167 |
| IC (g/kg) | 8.2087 |
| MBC (g/kg) | 0.1172 |
| pH | 6.9100 |
| Water content (%) | 0.5016 |
| NO3- (mg/kg) | -0.0588 |
| NH4+ (mg/kg) | 135.5076 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs50
The MAGs in SMP0048
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG01833 | HKD3_bin.10 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Phnomibacter;s__ | 79.95 | 3.02 | 49.0 | 4,883 | 2,849,844 |
| MAG01834 | HKD3_bin.11 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__;s__ | 92.73 | 5.96 | 74.0 | 13,264 | 3,395,068 |
| MAG01835 | HKD3_bin.12 | d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA4778;g__JBDKTK01;s__ | 69.09 | 3.02 | 57.0 | 5,629 | 1,931,042 |
| MAG01836 | HKD3_bin.14 | d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__JALHSR01;s__ | 79.31 | 0.88 | 41.0 | 11,460 | 2,092,602 |
| MAG01837 | HKD3_bin.15 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__UBA9159;g__DASPUA01;s__ | 60.67 | 1.78 | 50.0 | 5,795 | 1,417,808 |
| MAG01838 | HKD3_bin.16 | d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanoperedenaceae;g__Methanoperedens;s__ | 78.89 | 3.64 | 44.0 | 6,117 | 2,158,596 |
| MAG01839 | HKD3_bin.19 | d__Bacteria;p__Armatimonadota;c__Hebobacteria;o__GCA-020354555;f__;g__;s__ | 74.36 | 3.48 | 62.0 | 3,510 | 2,347,166 |
| MAG01840 | HKD3_bin.2 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__UBA5518;g__UBA5518;s__ | 93.84 | 3.19 | 70.0 | 24,715 | 3,764,792 |
| MAG01841 | HKD3_bin.22 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__SM23-35;g__;s__ | 79.61 | 5.54 | 47.0 | 9,920 | 1,444,771 |
| MAG01842 | HKD3_bin.23 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__VBCG01;s__ | 59.63 | 1.0 | 70.0 | 18,759 | 2,333,313 |
| MAG01843 | HKD3_bin.26 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__JAKQTR01;g__JAKQTR01;s__ | 67.83 | 3.35 | 70.0 | 11,855 | 3,594,945 |
| MAG01844 | HKD3_bin.27 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas;s__ | 76.06 | 0.33 | 69.0 | 29,276 | 2,197,098 |
| MAG01845 | HKD3_bin.28 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__JAGVSR01;s__ | 79.99 | 3.61 | 63.0 | 8,002 | 2,219,306 |
| MAG01846 | HKD3_bin.29 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella;s__ | 70.1 | 1.0 | 67.0 | 9,184 | 4,326,802 |
| MAG01847 | HKD3_bin.3 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Thermoanaerobaculales;f__Thermoanaerobaculaceae;g__RBG-13-68-16;s__ | 85.63 | 0.4 | 68.0 | 12,073 | 2,635,647 |
| MAG01848 | HKD3_bin.30 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Methyloligellaceae;g__Methyloceanibacter;s__ | 59.79 | 1.59 | 64.0 | 5,985 | 1,422,684 |
| MAG01849 | HKD3_bin.32 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__SJA-28;f__B-1AR;g__;s__ | 75.55 | 3.35 | 41.0 | 6,215 | 2,100,471 |
| MAG01850 | HKD3_bin.33 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JADJWR01;s__ | 85.98 | 4.98 | 69.0 | 30,564 | 4,485,528 |
| MAG01851 | HKD3_bin.35 | d__Bacteria;p__Desulfobacterota;c__SM23-61;o__SM23-61;f__;g__;s__ | 89.12 | 6.15 | 57.0 | 7,285 | 3,410,463 |
| MAG01852 | HKD3_bin.36 | d__Bacteria;p__Acidobacteriota;c__Aminicenantia;o__Aminicenantales;f__UBA8522;g__UBA8522;s__ | 88.32 | 3.37 | 60.0 | 15,592 | 3,650,596 |
| MAG01853 | HKD3_bin.37 | d__Bacteria;p__Acidobacteriota;c__Aminicenantia;o__UBA2199;f__UBA2199;g__UBA2199;s__ | 73.55 | 0.53 | 67.0 | 9,321 | 2,478,021 |
| MAG01854 | HKD3_bin.39 | d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Anaerosomatales;f__PALSA-660;g__;s__ | 57.91 | 1.14 | 70.0 | 8,982 | 1,289,311 |
| MAG01855 | HKD3_bin.40 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__SJA-28;f__OLB5;g__;s__ | 66.61 | 2.61 | 39.0 | 4,465 | 2,122,090 |
| MAG01856 | HKD3_bin.42 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Methylomirabilales;f__2-02-FULL-66-22;g__2-02-FULL-66-22;s__ | 58.32 | 0.75 | 66.0 | 10,832 | 1,868,525 |
| MAG01857 | HKD3_bin.44 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Chthoniobacterales;f__UBA10450;g__Udaeobacter;s__ | 94.72 | 1.65 | 55.0 | 24,022 | 3,147,509 |
| MAG01858 | HKD3_bin.47 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__HRBIN30;f__JAGDMS01;g__;s__ | 90.19 | 5.96 | 67.0 | 18,064 | 4,791,741 |
| MAG01859 | HKD3_bin.48 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__VBCG01;s__ | 72.57 | 4.39 | 71.0 | 9,518 | 3,695,003 |
| MAG01860 | HKD3_bin.49 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__;s__ | 86.67 | 0.16 | 62.0 | 11,504 | 2,779,178 |
| MAG01861 | HKD3_bin.5 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Phnomibacter;s__ | 76.77 | 0.25 | 55.0 | 11,694 | 3,454,575 |
| MAG01862 | HKD3_bin.50 | d__Archaea;p__Thermoplasmatota;c__E2;o__DHVEG-1;f__DHVEG-1;g__SM1-50;s__ | 74.6 | 0.72 | 45.0 | 7,727 | 1,542,886 |
| MAG01863 | HKD3_bin.53 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__SM23-35;g__UBA2194;s__ | 75.18 | 0.28 | 50.0 | 11,264 | 1,306,979 |
| MAG01864 | HKD3_bin.54 | d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__GWF2-50-10;g__;s__ | 79.44 | 5.75 | 48.0 | 3,057 | 1,685,564 |
| MAG01865 | HKD3_bin.56 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Geopseudomonas;s__ | 75.69 | 3.35 | 68.0 | 10,070 | 2,697,542 |
| MAG01866 | HKD3_bin.57 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA4823;g__FEB-25;s__ | 69.49 | 3.61 | 50.0 | 11,924 | 2,798,424 |
| MAG01867 | HKD3_bin.58 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E parakoreensis | 99.9 | 0.21 | 60.0 | 244,323 | 6,197,275 |
| MAG01868 | HKD3_bin.6 | d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Ectobacillus;s__ | 76.16 | 0.72 | 38.0 | 11,711 | 2,636,919 |
| MAG01869 | HKD3_bin.62 | d__Archaea;p__Thermoproteota;c__Bathyarchaeia;o__40CM-2-53-6;f__RBG-13-38-9;g__JAPKYM01;s__ | 66.96 | 0.19 | 48.0 | 4,699 | 788,243 |
| MAG01870 | HKD3_bin.66 | d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__0-14-0-80-60-11;s__ | 85.79 | 1.01 | 61.0 | 25,984 | 2,668,293 |
| MAG01871 | HKD3_bin.68 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Calidifontimicrobium;s__ | 85.16 | 5.94 | 72.0 | 23,499 | 3,554,350 |
| MAG01872 | HKD3_bin.69 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__DASVZT01;s__ | 82.28 | 0.66 | 72.0 | 9,365 | 2,770,612 |
| MAG01873 | HKD3_bin.7 | d__Archaea;p__Halobacteriota;c__Methanocellia;o__Methanocellales;f__Methanocellaceae;g__Methanocella;s__ | 65.27 | 1.07 | 58.0 | 1,949 | 1,751,936 |
| MAG01874 | HKD3_bin.71 | d__Bacteria;p__Acidobacteriota;c__UBA6911;o__UBA6911;f__UBA6911;g__JACADW01;s__JACADW01 sp017860075 | 72.27 | 1.12 | 61.0 | 10,658 | 3,849,055 |
| MAG01875 | HKD3_bin.72 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__UBA9159;g__DASRZP01;s__ | 73.53 | 3.24 | 53.0 | 9,320 | 1,610,625 |
| MAG01876 | HKD3_bin.76 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__JAKQTR01;g__JAKQTR01;s__ | 72.15 | 4.19 | 70.0 | 12,744 | 3,753,879 |
| MAG01877 | HKD3_bin.78 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter_F;s__ | 92.63 | 0.73 | 68.0 | 20,180 | 3,391,143 |
| MAG01878 | HKD3_bin.8 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__;s__ | 75.03 | 2.54 | 68.0 | 26,198 | 2,281,791 |
| MAG01879 | HKD3_bin.81 | d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__JACTUA01;g__JAJRCY01;s__ | 60.75 | 1.66 | 64.0 | 3,943 | 1,134,672 |
| MAG01880 | HKD3_bin.82 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Quisquiliibacterium;s__ | 68.38 | 0.86 | 72.0 | 25,354 | 3,076,902 |
| MAG01881 | HKD3_bin.83 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium_A;s__Hyphomicrobium_A sp035517115 | 97.48 | 0.25 | 66.0 | 20,962 | 2,850,029 |
| MAG01882 | HKD3_bin.9 | d__Bacteria;p__Acidobacteriota;c__Aminicenantia;o__Aminicenantales;f__RBG-16-66-30;g__RBG-16-66-30;s__ | 95.49 | 1.6 | 66.0 | 30,695 | 3,595,735 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |