GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0052 |
|---|---|
| Name | LYD1 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 42.9756 N 125.4875 E |
| Altitude (m) | 368.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-14 |
| Physicochemical properties | |
| TN (g/kg) | 1.5230 |
| TP (g/kg) | 0.4828 |
| TS (g/kg) | 0.5471 |
| TC (g/kg) | 17.5600 |
| Fe (mg/kg) | 22779.9145 |
| Mn (mg/kg) | 586.5385 |
| C/N | 11.5296 |
| IC (g/kg) | 0.3471 |
| MBC (g/kg) | 0.1307 |
| pH | 6.3800 |
| Water content (%) | 0.2796 |
| NO3- (mg/kg) | -0.8791 |
| NH4+ (mg/kg) | 3.6484 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs11
The MAGs in SMP0052
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG02027 | LYD1_bin.1 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720;s__ | 75.76 | 1.09 | 61.0 | 13,618 | 2,626,658 |
| MAG02028 | LYD1_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__JAQSDB01;s__ | 95.12 | 1.12 | 59.0 | 20,021 | 2,832,388 |
| MAG02029 | LYD1_bin.12 | d__Bacteria;p__Acidobacteriota;c__Aminicenantia;o__Aminicenantales;f__RBG-16-66-30;g__RBG-16-66-30;s__ | 76.11 | 0.1 | 65.0 | 14,546 | 2,025,944 |
| MAG02030 | LYD1_bin.13 | d__Bacteria;p__Acidobacteriota;c__UBA6911;o__UBA6911;f__UBA6911;g__UBA6911;s__ | 87.65 | 4.24 | 55.0 | 7,250 | 3,424,724 |
| MAG02031 | LYD1_bin.14 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Versatilivoradales;f__Versatilivoraceae;g__;s__ | 68.52 | 1.85 | 53.0 | 3,840 | 2,874,325 |
| MAG02032 | LYD1_bin.16 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__VadinHA17;g__LD21;s__ | 88.26 | 1.86 | 41.0 | 20,390 | 3,440,976 |
| MAG02033 | LYD1_bin.17 | d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerobacaceae;g__GCA-020343675;s__ | 61.92 | 0.36 | 58.0 | 5,405 | 2,336,134 |
| MAG02034 | LYD1_bin.18 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Fen-1088;f__Fen-1088;g__Fen-1118;s__ | 82.94 | 3.35 | 68.0 | 7,172 | 5,635,979 |
| MAG02035 | LYD1_bin.2 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__UBA6898;g__Sulfobium;s__ | 100.0 | 3.53 | 51.0 | 12,904 | 2,797,710 |
| MAG02036 | LYD1_bin.8 | d__Bacteria;p__Acidobacteriota;c__Aminicenantia;o__Aminicenantales;f__RBG-16-66-30;g__JALHVH01;s__ | 93.17 | 6.68 | 62.0 | 29,398 | 2,957,163 |
| MAG02037 | LYD1_bin.9 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA4823;g__JAKOUW01;s__ | 94.67 | 5.95 | 56.0 | 82,992 | 4,810,052 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |