GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0108 |
|---|---|
| Name | WH3 |
| Type | river |
| Habitat | sediment |
| Country | China |
| Latitude and longitude | 34.6105556 N 110.253611 E |
| Altitude (m) | 300.7 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2025-04-23 |
| Physicochemical properties | |
| TN (g/kg) | 0.5488 |
| TP (g/kg) | 0.6437 |
| TS (g/kg) | 0.6980 |
| TC (g/kg) | 17.0100 |
| Fe (mg/kg) | 26528.9147 |
| Mn (mg/kg) | 444.5471 |
| C/N | |
| IC (g/kg) | |
| MBC (g/kg) | 0.1017 |
| pH | 7.2300 |
| Water content (%) | 0.3070 |
| NO3- (mg/kg) | 19.4126 |
| NH4+ (mg/kg) | 3.9346 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs40
The MAGs in SMP0108
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG04131 | WH3_bin.11 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__M3007;s__ | 98.37 | 0.58 | 46.0 | 26,091 | 5,628,565 |
| MAG04132 | WH3_bin.12 | d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__DSM-12255;g__;s__ | 56.79 | 0.98 | 59.0 | 3,585 | 1,016,485 |
| MAG04133 | WH3_bin.13 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA-2747695;s__ | 75.44 | 3.66 | 33.0 | 5,820 | 2,128,996 |
| MAG04134 | WH3_bin.14 | d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellia;o__RFP12;f__UBA1067;g__CAIZQW01;s__CAIZQW01 sp903935195 | 69.62 | 3.65 | 53.0 | 6,747 | 2,120,536 |
| MAG04135 | WH3_bin.16 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__PHOS-HE28;g__PHOS-HE28;s__PHOS-HE28 sp020847755 | 100.0 | 2.6 | 66.0 | 12,379 | 3,433,867 |
| MAG04136 | WH3_bin.17 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__VadinHA17;g__SR-FBR-E99;s__ | 90.43 | 2.97 | 47.0 | 16,338 | 3,272,691 |
| MAG04137 | WH3_bin.18 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767-A;f__2013-40CM-41-45;g__JADKJP01;s__JADKJP01 sp035438225 | 96.26 | 0.4 | 44.0 | 10,839 | 3,395,423 |
| MAG04138 | WH3_bin.19 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia;s__Burkholderia sp002223055 | 75.91 | 2.69 | 67.0 | 4,723 | 5,667,804 |
| MAG04139 | WH3_bin.2 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter;s__Luteolibacter sp041306405 | 83.75 | 4.7 | 62.0 | 8,835 | 3,748,966 |
| MAG04140 | WH3_bin.21 | d__Bacteria;p__UBA4055;c__UBA4055;o__UBA4055;f__UBA4055;g__UBA12480;s__ | 90.0 | 7.27 | 39.0 | 13,634 | 2,563,185 |
| MAG04141 | WH3_bin.23 | d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerohalosphaeraceae;g__;s__ | 64.45 | 1.59 | 52.0 | 2,552 | 1,923,114 |
| MAG04142 | WH3_bin.24 | d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__Methanothrix;s__Methanothrix soehngenii | 92.65 | 1.0 | 53.0 | 9,287 | 2,268,637 |
| MAG04143 | WH3_bin.27 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter;s__Ferruginibacter sp016710165 | 81.63 | 4.6 | 46.0 | 5,813 | 2,911,833 |
| MAG04144 | WH3_bin.28 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__M0103;s__M0103 sp041177985 | 84.48 | 1.2 | 37.0 | 7,971 | 2,334,892 |
| MAG04145 | WH3_bin.29 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas;s__ | 91.75 | 4.95 | 52.0 | 7,172 | 1,832,568 |
| MAG04146 | WH3_bin.30 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767-A;f__2013-40CM-41-45;g__CAINVI01;s__CAINVI01 sp016713765 | 72.78 | 2.61 | 54.0 | 2,912 | 2,210,195 |
| MAG04147 | WH3_bin.31 | d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Anaerosomatales;f__Anaerosomataceae;g__UBA6100;s__ | 61.62 | 2.09 | 67.0 | 6,403 | 1,447,767 |
| MAG04148 | WH3_bin.32 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__BACL12;g__UBA11426;s__ | 57.28 | 0.15 | 44.0 | 6,155 | 1,230,020 |
| MAG04149 | WH3_bin.33 | d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__CAILAD01;f__CAILAD01;g__JAUPVL01;s__ | 82.83 | 0.76 | 39.0 | 11,097 | 693,545 |
| MAG04150 | WH3_bin.34 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Promineifilales;f__Promineifilaceae;g__JAGVTM01;s__ | 73.57 | 4.66 | 58.0 | 2,707 | 3,933,761 |
| MAG04151 | WH3_bin.35 | d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Rectinemataceae;g__;s__ | 76.3 | 4.98 | 52.0 | 3,884 | 1,909,220 |
| MAG04152 | WH3_bin.37 | d__Bacteria;p__Bacteroidota_A;c__SZUA-365;o__SZUA-365;f__SZUA-365;g__SZUA-365;s__ | 79.29 | 1.44 | 60.0 | 4,043 | 2,895,977 |
| MAG04153 | WH3_bin.38 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Ferrovibrionales;f__Ferrovibrionaceae;g__JAFKFH01;s__ | 91.14 | 3.85 | 68.0 | 11,792 | 6,586,925 |
| MAG04154 | WH3_bin.39 | d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellia;o__UBA8416;f__CAMCYG01;g__CAMCYG01;s__ | 90.62 | 0.61 | 52.0 | 8,933 | 2,928,639 |
| MAG04155 | WH3_bin.40 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Albidovulum;s__Albidovulum sp020637675 | 92.1 | 2.33 | 68.0 | 8,309 | 3,146,981 |
| MAG04156 | WH3_bin.42 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna;s__ | 72.08 | 2.98 | 54.0 | 3,754 | 1,102,648 |
| MAG04157 | WH3_bin.45 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter;s__Ferruginibacter pinensis_I | 68.13 | 1.99 | 42.0 | 4,065 | 2,149,575 |
| MAG04158 | WH3_bin.47 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__SPDF01;s__ | 69.49 | 3.06 | 70.0 | 6,847 | 1,986,951 |
| MAG04159 | WH3_bin.48 | d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulforhopalus;s__ | 62.28 | 2.13 | 58.0 | 3,689 | 2,764,702 |
| MAG04160 | WH3_bin.49 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__SJA-28;f__B-1AR;g__JAEUSI01;s__JAEUSI01 sp016709315 | 90.38 | 0.96 | 35.0 | 12,582 | 3,347,134 |
| MAG04161 | WH3_bin.5 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter;s__Ferruginibacter sp018266715 | 65.41 | 2.93 | 41.0 | 2,018 | 1,585,838 |
| MAG04162 | WH3_bin.51 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767-A;f__OLB10;g__OLB10;s__OLB10 sp016699635 | 100.0 | 0.08 | 37.0 | 104,559 | 3,078,993 |
| MAG04163 | WH3_bin.52 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Aestuariivirgaceae;g__Aestuariivirga;s__Aestuariivirga sp016792825 | 75.14 | 0.93 | 59.0 | 7,870 | 2,490,867 |
| MAG04164 | WH3_bin.54 | d__Bacteria;p__Spirochaetota;c__UBA4802;o__UBA4802;f__UBA5550;g__JBFZEZ01;s__ | 79.22 | 1.58 | 44.0 | 8,262 | 3,761,075 |
| MAG04165 | WH3_bin.56 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Allopontixanthobacter;s__ | 71.32 | 2.58 | 62.0 | 4,392 | 1,787,835 |
| MAG04166 | WH3_bin.57 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__UBA5195;s__ | 60.05 | 1.22 | 50.0 | 4,462 | 1,801,928 |
| MAG04167 | WH3_bin.58 | d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellia;o__CAIKKV01;f__CAITUY01;g__JAABPW01;s__ | 91.21 | 2.47 | 60.0 | 14,175 | 3,080,029 |
| MAG04168 | WH3_bin.59 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter;s__ | 73.7 | 1.41 | 65.0 | 4,886 | 2,348,888 |
| MAG04169 | WH3_bin.64 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas;s__Thermomonas sp016720345 | 66.45 | 2.23 | 70.0 | 4,879 | 1,682,613 |
| MAG04170 | WH3_bin.8 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Promineifilales;f__Promineifilaceae;g__JACKCB01;s__ | 78.48 | 3.94 | 63.0 | 4,223 | 4,411,416 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |