GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0104 |
|---|---|
| Name | TLS2 |
| Type | marsh |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 43.291389 N 122.592222 E |
| Altitude (m) | 196.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-29 |
| Physicochemical properties | |
| TN (g/kg) | 0.6102 |
| TP (g/kg) | 0.1118 |
| TS (g/kg) | 0.0457 |
| TC (g/kg) | 3.1200 |
| Fe (mg/kg) | |
| Mn (mg/kg) | |
| C/N | 5.1132 |
| IC (g/kg) | 0.9976 |
| MBC (g/kg) | 0.1384 |
| pH | 8.7600 |
| Water content (%) | 0.1500 |
| NO3- (mg/kg) | 0.9181 |
| NH4+ (mg/kg) | 2.4141 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs52
The MAGs in SMP0104
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG03981 | TLS2_bin.1 | d__Bacteria;p__Tectomicrobia;c__Entotheonellia;o__Entotheonellales;f__Entotheonellaceae;g__Entotheonella;s__ | 70.09 | 3.54 | 57.0 | 6,022 | 3,673,446 |
| MAG03982 | TLS2_bin.10 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Allosphingosinicella;s__ | 61.95 | 1.17 | 68.0 | 9,928 | 1,778,470 |
| MAG03983 | TLS2_bin.12 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Micromonosporaceae;g__Natronosporangium;s__ | 97.16 | 1.34 | 71.0 | 40,411 | 4,530,635 |
| MAG03984 | TLS2_bin.13 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Bryobacteraceae;g__JAWXCM01;s__ | 86.59 | 5.34 | 61.0 | 6,447 | 6,972,744 |
| MAG03985 | TLS2_bin.16 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__JAFAIN01;g__;s__ | 95.81 | 0.21 | 67.0 | 18,392 | 3,114,298 |
| MAG03986 | TLS2_bin.17 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__;s__ | 89.49 | 5.06 | 71.0 | 10,277 | 5,117,049 |
| MAG03987 | TLS2_bin.18 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__ | 81.84 | 1.94 | 65.0 | 31,781 | 1,907,494 |
| MAG03988 | TLS2_bin.20 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__QHBO01;f__QHBO01;g__JACDBZ01;s__JACDBZ01 sp035463095 | 67.2 | 1.15 | 71.0 | 12,016 | 1,572,295 |
| MAG03989 | TLS2_bin.21 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__;s__ | 96.66 | 5.75 | 71.0 | 15,841 | 5,643,132 |
| MAG03990 | TLS2_bin.22 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__ZC4RG35;g__JAOUGY01;s__ | 88.03 | 0.84 | 71.0 | 34,069 | 3,472,381 |
| MAG03991 | TLS2_bin.24 | d__Bacteria;p__Desulfobacterota_C;c__Deferrisomatia;o__Deferrisomatales;f__JACRMM01;g__JBFLZB01;s__ | 78.96 | 2.03 | 70.0 | 6,340 | 2,474,401 |
| MAG03992 | TLS2_bin.25 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__QHBO01;f__QHBO01;g__JAPSGM01;s__ | 56.17 | 0.03 | 72.0 | 12,313 | 1,364,492 |
| MAG03993 | TLS2_bin.26 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Haliangiales;f__Haliangiaceae;g__Haliangium;s__ | 89.01 | 1.49 | 70.0 | 63,444 | 7,917,599 |
| MAG03994 | TLS2_bin.27 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Bryobacteraceae;g__;s__ | 90.4 | 0.85 | 66.0 | 16,088 | 7,079,848 |
| MAG03995 | TLS2_bin.28 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Perlucidibaca;s__Perlucidibaca sp947085865 | 86.47 | 1.19 | 50.0 | 15,511 | 1,909,952 |
| MAG03996 | TLS2_bin.3 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__UBA6623;g__;s__ | 80.16 | 3.24 | 62.0 | 7,031 | 4,550,808 |
| MAG03997 | TLS2_bin.30 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__ZC4RG35;g__JANQRA01;s__ | 73.02 | 4.23 | 65.0 | 13,040 | 2,991,687 |
| MAG03998 | TLS2_bin.31 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__ZC4RG35;g__JARDZU01;s__ | 90.6 | 0.83 | 64.0 | 47,770 | 2,899,808 |
| MAG03999 | TLS2_bin.32 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UBA9968;f__UBA9968;g__DP-20;s__ | 83.01 | 6.27 | 58.0 | 27,460 | 4,323,393 |
| MAG04000 | TLS2_bin.34 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__Nitrososphaera;s__Nitrososphaera sp036741615 | 85.17 | 0.14 | 42.0 | 10,512 | 1,772,670 |
| MAG04001 | TLS2_bin.35 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Stagnimonas;s__ | 73.25 | 1.7 | 68.0 | 5,487 | 2,592,193 |
| MAG04002 | TLS2_bin.38 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;f__JAHDYP01;g__JAHDYP01;s__ | 83.99 | 4.71 | 60.0 | 10,592 | 4,960,809 |
| MAG04003 | TLS2_bin.39 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__Nitrososphaera;s__ | 87.3 | 0.02 | 50.0 | 12,967 | 1,695,734 |
| MAG04004 | TLS2_bin.40 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Fen-999;s__ | 78.67 | 4.19 | 64.0 | 6,518 | 2,296,713 |
| MAG04005 | TLS2_bin.41 | d__Bacteria;p__Acidobacteriota;c__UBA6911;o__RPQK01;f__RPQK01;g__;s__ | 76.86 | 3.37 | 58.0 | 5,174 | 4,450,956 |
| MAG04006 | TLS2_bin.43 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Promineifilales;f__Promineifilaceae;g__CAADGU01;s__ | 83.11 | 2.9 | 57.0 | 7,105 | 4,938,849 |
| MAG04007 | TLS2_bin.46 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Ga0077530;s__ | 87.4 | 1.36 | 66.0 | 16,177 | 3,659,135 |
| MAG04008 | TLS2_bin.47 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__DATKEI01;s__DATKEI01 sp035544455 | 92.21 | 7.99 | 72.0 | 5,170 | 4,398,009 |
| MAG04009 | TLS2_bin.48 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Methyloligellaceae;g__Methyloceanibacter;s__ | 63.05 | 1.67 | 64.0 | 4,164 | 1,612,674 |
| MAG04010 | TLS2_bin.49 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rubrivivax;s__ | 72.4 | 2.77 | 69.0 | 4,539 | 2,464,807 |
| MAG04011 | TLS2_bin.5 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__JBFJPA01;s__ | 88.82 | 2.63 | 68.0 | 25,249 | 4,531,276 |
| MAG04012 | TLS2_bin.52 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__;s__ | 75.62 | 4.95 | 72.0 | 18,774 | 4,095,712 |
| MAG04013 | TLS2_bin.53 | d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__DASPGW01;g__DASPGW01;s__ | 59.36 | 0.05 | 61.0 | 7,240 | 1,767,466 |
| MAG04014 | TLS2_bin.54 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Multivoradales;f__DATKCC01;g__DATKCC01;s__ | 81.87 | 0.87 | 74.0 | 7,108 | 3,694,660 |
| MAG04015 | TLS2_bin.55 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__SH-MAG3;s__ | 92.91 | 3.15 | 66.0 | 85,012 | 4,858,892 |
| MAG04016 | TLS2_bin.56 | d__Bacteria;p__Actinomycetota;c__Thermoleophilia;o__Solirubrobacterales;f__70-9;g__DATHVI01;s__ | 65.76 | 0.9 | 73.0 | 7,850 | 1,592,480 |
| MAG04017 | TLS2_bin.57 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JAWXBA01;s__ | 98.92 | 0.87 | 68.0 | 47,186 | 3,532,252 |
| MAG04018 | TLS2_bin.6 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__SH-MAG3;s__ | 92.87 | 2.21 | 67.0 | 54,916 | 4,211,986 |
| MAG04019 | TLS2_bin.60 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__;s__ | 73.26 | 3.51 | 61.0 | 7,047 | 3,859,843 |
| MAG04020 | TLS2_bin.61 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Perlucidibaca;s__ | 90.22 | 0.42 | 65.0 | 23,913 | 2,294,039 |
| MAG04021 | TLS2_bin.62 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__UBA5794;g__JACDBE01;s__ | 94.29 | 1.68 | 69.0 | 38,231 | 3,589,754 |
| MAG04022 | TLS2_bin.63 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Kineosporiaceae;g__DASTGO01;s__ | 92.31 | 2.6 | 73.0 | 18,119 | 5,103,785 |
| MAG04023 | TLS2_bin.66 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__;s__ | 88.43 | 1.21 | 70.0 | 19,418 | 3,154,648 |
| MAG04024 | TLS2_bin.67 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Bin65;f__Bin65;g__SBBV01;s__ | 84.32 | 4.71 | 68.0 | 14,570 | 4,587,968 |
| MAG04025 | TLS2_bin.68 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__UBA5794;f__ZC4RG35;g__ZC4RG35;s__ | 92.87 | 0.79 | 65.0 | 39,661 | 2,502,042 |
| MAG04026 | TLS2_bin.69 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Jiangellales;f__Jiangellaceae;g__DASTQL01;s__DASTQL01 sp035462375 | 81.4 | 1.46 | 73.0 | 11,539 | 3,249,986 |
| MAG04027 | TLS2_bin.7 | d__Bacteria;p__Actinomycetota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__JAICNY01;s__JAICNY01 sp025930955 | 77.87 | 2.06 | 73.0 | 8,949 | 2,471,467 |
| MAG04028 | TLS2_bin.70 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__2-12-FULL-66-21;g__JACCXG01;s__ | 84.52 | 6.25 | 69.0 | 17,194 | 5,257,715 |
| MAG04029 | TLS2_bin.71 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JBBDIO01;s__ | 92.25 | 4.17 | 56.0 | 14,391 | 6,328,032 |
| MAG04030 | TLS2_bin.72 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__GCA-2731375;f__GCA-2731375;g__JAVKFY01;s__ | 93.35 | 0.64 | 72.0 | 24,385 | 4,568,639 |
| MAG04031 | TLS2_bin.8 | d__Bacteria;p__UBA10199;c__UBA10199;o__DSSB01;f__DSSB01;g__DATEDP01;s__ | 98.14 | 0.63 | 60.0 | 14,628 | 2,707,116 |
| MAG04032 | TLS2_bin.9 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Woeseiales;f__Woeseiaceae;g__IDS-8;s__ | 96.04 | 2.07 | 62.0 | 23,750 | 4,087,436 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |