GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0105 |
|---|---|
| Name | TLS3 |
| Type | marsh |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 43.291389 N 122.592222 E |
| Altitude (m) | 196.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-29 |
| Physicochemical properties | |
| TN (g/kg) | 0.5715 |
| TP (g/kg) | 0.0906 |
| TS (g/kg) | 0.0763 |
| TC (g/kg) | 6.3600 |
| Fe (mg/kg) | |
| Mn (mg/kg) | |
| C/N | 11.1296 |
| IC (g/kg) | 2.9739 |
| MBC (g/kg) | 0.1360 |
| pH | 8.5200 |
| Water content (%) | 0.1551 |
| NO3- (mg/kg) | 4.8825 |
| NH4+ (mg/kg) | 2.0832 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs36
The MAGs in SMP0105
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG04033 | TLS3_bin.1 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__JAFMJV01;s__ | 66.0 | 2.28 | 72.0 | 7,125 | 2,817,710 |
| MAG04034 | TLS3_bin.10 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter_I;s__ | 94.18 | 1.37 | 66.0 | 18,393 | 3,781,211 |
| MAG04035 | TLS3_bin.11 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAOUJD01;s__ | 64.97 | 0.74 | 70.0 | 4,641 | 2,211,056 |
| MAG04036 | TLS3_bin.12 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JACCZX01;s__ | 91.88 | 1.11 | 62.0 | 18,214 | 3,208,604 |
| MAG04037 | TLS3_bin.13 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__VadinHA17;g__LD21;s__ | 83.56 | 2.66 | 45.0 | 6,970 | 3,564,198 |
| MAG04038 | TLS3_bin.14 | d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Tepidiformales;f__Tepidiformaceae;g__Tepidiforma;s__ | 84.58 | 2.61 | 65.0 | 10,591 | 3,117,281 |
| MAG04039 | TLS3_bin.15 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__B-17B0;f__B-17BO;g__Aurantibacillus;s__ | 90.88 | 0.21 | 39.0 | 9,166 | 3,177,471 |
| MAG04040 | TLS3_bin.16 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__Sva-07;s__ | 94.14 | 1.04 | 70.0 | 24,461 | 3,679,342 |
| MAG04041 | TLS3_bin.17 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__;s__ | 87.12 | 4.05 | 69.0 | 4,319 | 3,150,394 |
| MAG04042 | TLS3_bin.19 | d__Bacteria;p__Spirochaetota;c__Leptospiria;o__Turneriellales;f__Turneriellaceae;g__Turneriella;s__ | 70.94 | 2.14 | 53.0 | 2,756 | 3,601,467 |
| MAG04043 | TLS3_bin.2 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Amaricoccus;s__ | 82.68 | 6.08 | 73.0 | 5,648 | 2,929,013 |
| MAG04044 | TLS3_bin.20 | d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__DASSQI01;s__ | 79.49 | 2.81 | 72.0 | 8,768 | 2,671,911 |
| MAG04045 | TLS3_bin.22 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 56.42 | 0.9 | 55.0 | 4,182 | 2,467,070 |
| MAG04046 | TLS3_bin.23 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__;s__ | 75.29 | 2.57 | 65.0 | 5,369 | 2,283,619 |
| MAG04047 | TLS3_bin.24 | d__Bacteria;p__Actinomycetota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__JAICNY01;s__JAICNY01 sp025930955 | 65.58 | 1.13 | 73.0 | 6,591 | 2,065,101 |
| MAG04048 | TLS3_bin.25 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__TH1177;s__TH1177 sp025922715 | 96.63 | 2.29 | 29.0 | 17,096 | 2,922,110 |
| MAG04049 | TLS3_bin.26 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__;s__ | 70.53 | 3.36 | 61.0 | 6,017 | 3,703,202 |
| MAG04050 | TLS3_bin.28 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Promineifilales;f__Promineifilaceae;g__Leptofilum;s__ | 71.65 | 2.38 | 57.0 | 5,465 | 4,530,035 |
| MAG04051 | TLS3_bin.3 | d__Bacteria;p__Actinomycetota;c__Nitriliruptoria;o__Euzebyales;f__JAHELV01;g__;s__ | 76.05 | 3.87 | 74.0 | 7,592 | 4,761,289 |
| MAG04052 | TLS3_bin.30 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Villigracilaceae;g__Villigracilis;s__ | 95.41 | 3.44 | 55.0 | 14,042 | 3,184,841 |
| MAG04053 | TLS3_bin.36 | d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__UBA11236;f__UBA11236;g__Chersky-265;s__ | 82.1 | 5.68 | 60.0 | 15,998 | 5,658,348 |
| MAG04054 | TLS3_bin.37 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Fen-999;s__ | 73.56 | 3.86 | 64.0 | 6,557 | 2,374,060 |
| MAG04055 | TLS3_bin.38 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseolinea;s__ | 77.72 | 3.62 | 42.0 | 5,298 | 4,992,599 |
| MAG04056 | TLS3_bin.42 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 86.21 | 2.8 | 54.0 | 19,238 | 5,144,043 |
| MAG04057 | TLS3_bin.43 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466;s__ | 82.2 | 1.2 | 45.0 | 9,115 | 3,692,132 |
| MAG04058 | TLS3_bin.44 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D;s__ | 95.26 | 0.37 | 56.0 | 42,482 | 3,840,146 |
| MAG04059 | TLS3_bin.46 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__SPCO01;s__ | 61.46 | 0.61 | 71.0 | 6,901 | 2,382,981 |
| MAG04060 | TLS3_bin.5 | d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__JAKEEP01;s__ | 98.12 | 2.1 | 58.0 | 140,119 | 3,550,058 |
| MAG04061 | TLS3_bin.50 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__IGN3;s__ | 84.81 | 1.4 | 34.0 | 4,086 | 1,999,959 |
| MAG04062 | TLS3_bin.51 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UBA9968;f__UBA9968;g__WHTF01;s__ | 82.2 | 3.61 | 55.0 | 15,819 | 2,821,025 |
| MAG04063 | TLS3_bin.52 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella;s__ | 84.99 | 1.24 | 59.0 | 12,493 | 2,394,740 |
| MAG04064 | TLS3_bin.53 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__JANYGI01;s__ | 84.14 | 3.14 | 69.0 | 18,791 | 9,064,591 |
| MAG04065 | TLS3_bin.6 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinomycetospora;s__ | 73.47 | 0.99 | 75.0 | 6,859 | 4,092,908 |
| MAG04066 | TLS3_bin.7 | d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_D;s__Nitrospira_D sp041742455 | 83.82 | 5.15 | 54.0 | 7,580 | 3,446,078 |
| MAG04067 | TLS3_bin.8 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__Nitrosocosmicus;s__ | 94.25 | 1.88 | 34.0 | 9,071 | 2,972,811 |
| MAG04068 | TLS3_bin.9 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__F2B08;s__ | 89.2 | 0.55 | 71.0 | 20,822 | 3,147,833 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |