GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0126 |
|---|---|
| Name | YYD3 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 29.457222 N 112.764444 E |
| Altitude (m) | 26.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | |
| Physicochemical properties | |
| TN (g/kg) | 1.6076 |
| TP (g/kg) | 0.9358 |
| TS (g/kg) | 0.1347 |
| TC (g/kg) | 27.8000 |
| Fe (mg/kg) | 41000.0000 |
| Mn (mg/kg) | 845.6790 |
| C/N | 17.2930 |
| IC (g/kg) | 14.3091 |
| MBC (g/kg) | 0.6763 |
| pH | 7.8600 |
| Water content (%) | 0.3750 |
| NO3- (mg/kg) | -3.9372 |
| NH4+ (mg/kg) | 4.8686 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs16
The MAGs in SMP0126
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG04644 | YYD3_bin.1 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__SCGC-AG-212-J23;s__SCGC-AG-212-J23 sp025929745 | 92.17 | 3.01 | 66.0 | 8,526 | 3,116,924 |
| MAG04645 | YYD3_bin.12 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Vicinamibacterales;f__UBA2999;g__Gp6-AA40;s__ | 73.71 | 3.24 | 65.0 | 13,667 | 4,135,746 |
| MAG04646 | YYD3_bin.13 | d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__PSRF01;s__ | 94.31 | 0.83 | 53.0 | 17,408 | 5,392,510 |
| MAG04647 | YYD3_bin.14 | d__Bacteria;p__Acidobacteriota;c__Aminicenantia;o__Aminicenantales;f__RBG-16-66-30;g__RBG-16-66-30;s__ | 77.23 | 2.44 | 66.0 | 2,358 | 2,598,211 |
| MAG04648 | YYD3_bin.19 | d__Bacteria;p__Acidobacteriota;c__Polarisedimenticolia;o__Polarisedimenticolales;f__DASRJG01;g__DASVAW01;s__DASVAW01 sp036376135 | 64.45 | 0.51 | 71.0 | 8,023 | 3,182,636 |
| MAG04649 | YYD3_bin.20 | d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__TH1177;s__TH1177 sp035706205 | 78.64 | 1.08 | 28.0 | 2,726 | 1,627,248 |
| MAG04650 | YYD3_bin.21 | d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__20CM-2-55-15;f__20CM-2-55-15;g__DASTBJ01;s__DASTBJ01 sp035712125 | 77.45 | 3.73 | 57.0 | 7,622 | 3,514,024 |
| MAG04651 | YYD3_bin.22 | d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__CAIMUX01;f__VGJL01;g__;s__ | 80.68 | 5.35 | 68.0 | 5,634 | 2,570,452 |
| MAG04652 | YYD3_bin.23 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JAICEH01;s__JAICEH01 sp035457305 | 58.12 | 1.51 | 73.0 | 7,561 | 1,628,345 |
| MAG04653 | YYD3_bin.3 | d__Bacteria;p__Acidobacteriota;c__Polarisedimenticolia;o__Polarisedimenticolales;f__DASRJG01;g__;s__ | 60.62 | 1.7 | 70.0 | 5,918 | 2,447,445 |
| MAG04654 | YYD3_bin.4 | d__Bacteria;p__Zixibacteria;c__MSB-5A5;o__GN15;f__FEB-12;g__FEB-12;s__ | 87.63 | 1.16 | 55.0 | 7,617 | 2,574,019 |
| MAG04655 | YYD3_bin.5 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__SZUA-320;s__SZUA-320 sp035709185 | 69.41 | 0.99 | 68.0 | 4,502 | 2,607,122 |
| MAG04656 | YYD3_bin.6 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__;s__ | 62.63 | 0.63 | 69.0 | 4,187 | 1,425,677 |
| MAG04657 | YYD3_bin.7 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__JAERML01;s__ | 80.91 | 1.74 | 57.0 | 4,744 | 2,733,904 |
| MAG04658 | YYD3_bin.8 | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Opimibacter;s__ | 78.16 | 1.77 | 45.0 | 4,828 | 2,894,148 |
| MAG04659 | YYD3_bin.9 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__CACIAM-22H2;f__CACIAM-22H2;g__DATFES01;s__DATFES01 sp035457725 | 91.56 | 0.25 | 65.0 | 21,106 | 3,679,883 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |