GWM
Global Wetland Microbiome Database
Overview
| ID | SMP0047 |
|---|---|
| Name | HKD2 |
| Type | paddy |
| Habitat | soil |
| Country | China |
| Latitude and longitude | 19.9 N 110.55 E |
| Altitude (m) | 25.0 |
| Instrument | illumina NovaSeq X Plus |
| AvgSpotLen (bp) | 300 |
| LibraryLayout | PAIRED |
| Project | PRJNA1430164 |
| Collection Date | 2022-10-27 |
| Physicochemical properties | |
| TN (g/kg) | 3.5307 |
| TP (g/kg) | 1.2483 |
| TS (g/kg) | 0.8148 |
| TC (g/kg) | 43.6400 |
| Fe (mg/kg) | 78624.5059 |
| Mn (mg/kg) | 725.2964 |
| C/N | 12.3602 |
| IC (g/kg) | 5.3677 |
| MBC (g/kg) | 0.1041 |
| pH | 6.7000 |
| Water content (%) | 0.5188 |
| NO3- (mg/kg) | 1.1160 |
| NH4+ (mg/kg) | 182.3407 |
Location
Community profile
The microbial community profiled by MetaPhlAn4
MAGs63
The MAGs in SMP0047
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |
|---|---|---|---|---|---|---|---|
| MAG01770 | HKD2_bin.1 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium;s__ | 99.8 | 1.23 | 62.0 | 63,337 | 2,765,162 |
| MAG01771 | HKD2_bin.100 | d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__DASXHD01;s__ | 78.66 | 5.14 | 69.0 | 8,958 | 6,823,699 |
| MAG01772 | HKD2_bin.103 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__Binatales;f__Binataceae;g__JAJPHI01;s__ | 57.53 | 1.01 | 59.0 | 2,158 | 1,708,416 |
| MAG01773 | HKD2_bin.12 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys;s__ | 67.57 | 2.64 | 64.0 | 9,234 | 2,407,863 |
| MAG01774 | HKD2_bin.13 | d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__DATAYF01;s__ | 67.88 | 2.71 | 52.0 | 3,138 | 2,841,687 |
| MAG01775 | HKD2_bin.14 | d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Methylomirabilales;f__2-02-FULL-66-22;g__2-02-FULL-66-22;s__ | 89.72 | 4.07 | 65.0 | 17,386 | 4,012,404 |
| MAG01776 | HKD2_bin.16 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA4823;g__FEB-25;s__ | 75.98 | 4.08 | 50.0 | 14,458 | 3,798,839 |
| MAG01777 | HKD2_bin.18 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__UBA9159;g__DASRZP01;s__ | 76.78 | 3.92 | 52.0 | 9,952 | 2,222,438 |
| MAG01778 | HKD2_bin.19 | d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Geobacteraceae;g__Geomonas;s__ | 99.97 | 4.27 | 60.0 | 20,458 | 5,001,585 |
| MAG01779 | HKD2_bin.2 | d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__JACTUA01;g__JAJRCY01;s__ | 63.48 | 2.62 | 64.0 | 2,445 | 1,355,540 |
| MAG01780 | HKD2_bin.20 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Fen-336;f__Fen-336;g__DATKME01;s__ | 63.42 | 1.75 | 73.0 | 14,743 | 3,261,068 |
| MAG01781 | HKD2_bin.22 | d__Bacteria;p__Desulfobacterota;c__WTBG01;o__WTBG01;f__WTBG01;g__CALJBY01;s__ | 60.73 | 0.56 | 55.0 | 5,789 | 1,418,158 |
| MAG01782 | HKD2_bin.23 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__HRBIN30;f__JAGDMS01;g__;s__ | 89.11 | 2.66 | 68.0 | 22,715 | 3,630,142 |
| MAG01783 | HKD2_bin.24 | d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__Thermodesulfovibrionales;f__SM23-35;g__UBA2194;s__ | 89.45 | 5.65 | 49.0 | 8,185 | 1,914,505 |
| MAG01784 | HKD2_bin.26 | d__Bacteria;p__Patescibacteriota;c__Microgenomatia;o__GWA2-44-7;f__Amesbacteraceae;g__XYB1-FULL-44-23;s__ | 82.81 | 0.1 | 48.0 | 18,701 | 803,467 |
| MAG01785 | HKD2_bin.27 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__;s__ | 93.48 | 2.03 | 63.0 | 12,794 | 2,813,980 |
| MAG01786 | HKD2_bin.28 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys;s__ | 75.05 | 2.94 | 60.0 | 23,080 | 2,872,106 |
| MAG01787 | HKD2_bin.29 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Rariloculales;f__Rariloculaceae;g__FEN-1219;s__ | 92.0 | 3.68 | 68.0 | 26,592 | 4,042,813 |
| MAG01788 | HKD2_bin.30 | d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__UBA10518;s__ | 94.22 | 4.68 | 63.0 | 9,459 | 3,168,671 |
| MAG01789 | HKD2_bin.31 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Fodinibacter;s__ | 61.99 | 0.11 | 74.0 | 5,273 | 2,137,251 |
| MAG01790 | HKD2_bin.32 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__Deferrimicrobium;s__ | 69.64 | 0.38 | 66.0 | 5,471 | 1,610,549 |
| MAG01791 | HKD2_bin.33 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__UBA5066;g__;s__ | 95.83 | 1.62 | 71.0 | 43,518 | 3,936,041 |
| MAG01792 | HKD2_bin.34 | d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Chthoniobacterales;f__UBA10450;g__Udaeobacter;s__ | 93.77 | 0.97 | 55.0 | 17,701 | 3,134,456 |
| MAG01793 | HKD2_bin.35 | d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA2174_A;g__SpSt-501;s__ | 90.4 | 1.38 | 68.0 | 13,294 | 3,204,907 |
| MAG01794 | HKD2_bin.37 | d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__DP-6;f__DP-6;g__DATJZY01;s__ | 81.77 | 2.39 | 72.0 | 27,153 | 4,114,495 |
| MAG01795 | HKD2_bin.4 | d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanotrichales;f__Methanotrichaceae;g__JALHSR01;s__ | 75.2 | 2.94 | 42.0 | 6,483 | 1,925,229 |
| MAG01796 | HKD2_bin.40 | d__Bacteria;p__Desulfobacterota_D;c__UBA1144;o__UBA2774;f__UBA2774;g__2-12-FULL-53-21;s__ | 78.33 | 2.35 | 52.0 | 3,256 | 2,227,480 |
| MAG01797 | HKD2_bin.42 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter;s__Arthrobacter sp030410515 | 58.84 | 0.07 | 70.0 | 3,562 | 2,061,308 |
| MAG01798 | HKD2_bin.45 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium;s__ | 74.06 | 1.83 | 66.0 | 16,645 | 2,346,736 |
| MAG01799 | HKD2_bin.46 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__DAHVFK01;s__ | 72.41 | 0.23 | 68.0 | 13,400 | 2,098,419 |
| MAG01800 | HKD2_bin.48 | d__Archaea;p__Thermoplasmatota;c__E2;o__DHVEG-1;f__DHVEG-1;g__SM1-50;s__ | 76.71 | 0.61 | 46.0 | 4,021 | 1,373,831 |
| MAG01801 | HKD2_bin.49 | d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Anaerosomatales;f__PALSA-660;g__;s__ | 85.07 | 1.87 | 70.0 | 21,575 | 1,503,655 |
| MAG01802 | HKD2_bin.5 | d__Bacteria;p__JAUVQV01;c__JAUVQV01;o__JAUVQV01;f__DATDCY01;g__DATDCY01;s__ | 55.42 | 0.87 | 70.0 | 12,326 | 1,489,586 |
| MAG01803 | HKD2_bin.51 | d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__PR03;g__PR03;s__ | 89.24 | 3.42 | 73.0 | 28,114 | 4,006,479 |
| MAG01804 | HKD2_bin.53 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__P2-11E;f__P2-11E;g__CF-39;s__ | 76.76 | 2.74 | 69.0 | 11,868 | 2,287,643 |
| MAG01805 | HKD2_bin.57 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__DASVZT01;s__ | 84.41 | 1.33 | 72.0 | 9,438 | 2,681,480 |
| MAG01806 | HKD2_bin.6 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;s__Pseudomonas_E parakoreensis | 100.0 | 2.57 | 60.0 | 152,467 | 6,345,811 |
| MAG01807 | HKD2_bin.60 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JALORV01;s__ | 94.31 | 3.66 | 67.0 | 27,016 | 3,743,704 |
| MAG01808 | HKD2_bin.61 | d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Fen-336;f__Fen-336;g__;s__ | 68.73 | 3.24 | 73.0 | 2,456 | 2,627,753 |
| MAG01809 | HKD2_bin.62 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__RBG-16-64-43;g__JAFGKK01;s__ | 73.73 | 3.45 | 63.0 | 2,983 | 2,868,894 |
| MAG01810 | HKD2_bin.66 | d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus;s__ | 95.19 | 3.3 | 36.0 | 8,372 | 3,415,957 |
| MAG01811 | HKD2_bin.67 | d__Bacteria;p__Bacteroidota_A;c__UBA10030;o__UBA10030;f__UBA6906;g__UBA6906;s__ | 96.25 | 0.22 | 60.0 | 126,448 | 3,458,943 |
| MAG01812 | HKD2_bin.69 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5066;f__Gp7-AA6;g__DAHUXD01;s__ | 85.69 | 1.36 | 71.0 | 19,937 | 4,041,327 |
| MAG01813 | HKD2_bin.7 | d__Bacteria;p__Patescibacteriota;c__Microgenomatia;o__GWA2-44-7;f__UBA8517;g__;s__ | 87.46 | 3.43 | 41.0 | 6,380 | 890,039 |
| MAG01814 | HKD2_bin.70 | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Frankiaceae;g__;s__ | 81.14 | 0.73 | 75.0 | 9,963 | 3,323,194 |
| MAG01815 | HKD2_bin.71 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium_A;s__Hyphomicrobium_A sp035517115 | 89.3 | 1.85 | 66.0 | 13,028 | 2,661,978 |
| MAG01816 | HKD2_bin.72 | d__Bacteria;p__Desulfobacterota_E;c__Deferrimicrobia;o__Deferrimicrobiales;f__Deferrimicrobiaceae;g__;s__ | 75.83 | 5.0 | 69.0 | 11,269 | 2,181,123 |
| MAG01817 | HKD2_bin.73 | d__Bacteria;p__Bacteroidota_A;c__Ignavibacteria;o__SJA-28;f__B-1AR;g__;s__ | 75.59 | 2.19 | 41.0 | 7,442 | 2,088,669 |
| MAG01818 | HKD2_bin.75 | d__Bacteria;p__Bacillota;c__Clostridia;o__Lutisporales;f__Lutisporaceae;g__GWB2-37-7;s__ | 93.64 | 8.63 | 37.0 | 9,300 | 3,141,120 |
| MAG01819 | HKD2_bin.77 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Thermoanaerobaculales;f__Sulfomarinibacteraceae;g__FEB-10;s__ | 79.91 | 0.4 | 71.0 | 31,139 | 3,010,473 |
| MAG01820 | HKD2_bin.8 | d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__DAIOEK01;s__ | 82.27 | 1.17 | 48.0 | 9,256 | 2,443,179 |
| MAG01821 | HKD2_bin.80 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__RPQJ01;s__ | 60.71 | 1.53 | 68.0 | 22,414 | 2,836,412 |
| MAG01822 | HKD2_bin.83 | d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Dehalococcoidales;f__UBA3254;g__;s__ | 71.06 | 1.3 | 59.0 | 5,353 | 1,495,772 |
| MAG01823 | HKD2_bin.84 | d__Bacteria;p__Acidobacteriota;c__HRBIN11;o__JAKEFK01;f__JAKEFK01;g__;s__ | 93.09 | 0.09 | 62.0 | 10,768 | 4,875,129 |
| MAG01824 | HKD2_bin.85 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__VBCG01;s__ | 73.26 | 0.63 | 70.0 | 21,125 | 2,666,910 |
| MAG01825 | HKD2_bin.87 | d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Rariloculales;f__Rariloculaceae;g__FEN-1219;s__ | 80.29 | 1.56 | 68.0 | 16,513 | 3,267,824 |
| MAG01826 | HKD2_bin.88 | d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189;s__ | 59.05 | 0.06 | 73.0 | 16,492 | 1,669,524 |
| MAG01827 | HKD2_bin.9 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DASQPE01;s__ | 85.85 | 1.53 | 72.0 | 11,936 | 2,887,054 |
| MAG01828 | HKD2_bin.90 | d__Bacteria;p__Actinomycetota;c__Acidimicrobiia;o__IMCC26256;f__JAENVU01;g__;s__ | 96.18 | 1.23 | 72.0 | 61,219 | 3,732,312 |
| MAG01829 | HKD2_bin.91 | d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JAQBQB01;s__ | 86.88 | 2.5 | 67.0 | 35,394 | 4,873,699 |
| MAG01830 | HKD2_bin.95 | d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Thermoanaerobaculales;f__Thermoanaerobaculaceae;g__RBG-13-68-16;s__ | 90.48 | 2.24 | 68.0 | 14,523 | 2,845,821 |
| MAG01831 | HKD2_bin.96 | d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella;s__ | 94.01 | 2.85 | 67.0 | 30,757 | 5,633,274 |
| MAG01832 | HKD2_bin.99 | d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__UBA472;g__JACXTP01;s__ | 80.63 | 5.46 | 58.0 | 2,341 | 1,764,773 |
| ID | Name | Taxonomy | Completeness | Contamination | GC | N50 | Size |